BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044126
(333 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 284 bits (727), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 145/284 (51%), Positives = 194/284 (68%), Gaps = 6/284 (2%)
Query: 39 KNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSR 98
++P A I K++ I ++ AP+V SFSSRGPN+ D++KPDIS PGV ILAA+ +APV
Sbjct: 342 RSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVG- 400
Query: 99 DIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQ 158
R+ +NIISGTSM+CPH G+A YVK+++P WSP+AIKSA+MTTA PMN+ N Q
Sbjct: 401 --GIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQ 458
Query: 159 AEFAYGSGHINPVKAINPGLVYGAFKQDYINMLCSMGYDVDKLRTISGDNSTCSKGSEKT 218
AEFAYGSGH+NP+KA+ PGLVY A + DY+ LC GY+ +R I+GD S C+ G+
Sbjct: 459 AEFAYGSGHVNPLKAVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGR 518
Query: 219 SPKDLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKAGILQNSKISVNVVPEVLSFR 278
DLNYPS VS ++F F RT+T++ STY+A I ++++V P VLSF
Sbjct: 519 V-WDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFN 577
Query: 279 SLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSRIVRSPIVVHS 322
L ++KSF +TV +G G +VSA+LVW DG VRSPI + S
Sbjct: 578 GLGDRKSFTLTV--RGSIKGFVVSASLVWSDGVHYVRSPITITS 619
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 177 bits (449), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 123/298 (41%), Positives = 182/298 (61%), Gaps = 23/298 (7%)
Query: 41 PQAEI-LKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSP-LAPVSR 98
P A I + + + AP+VA+ S+RGP++ I KPDI APGV ILAAY P + S
Sbjct: 350 PTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSI 409
Query: 99 DIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSK--- 155
Y + SGTSMA PHAAG+AA +K+ HP+WSPSAI+SA+MTTA P+++++
Sbjct: 410 GTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPI 469
Query: 156 ----NTQAE--FAYGSGHINPVKAINPGLVYGAFKQDYINMLCSMGYDVDKLRTISGDNS 209
N +A G+GH++P +A++PGLVY A QDY+N+LCS+ + ++ +TI+ ++
Sbjct: 470 KDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSA 529
Query: 210 T--CSKGSEKTSPKDLNYPSMAAQVSSGESFTI---KFPRTVTNIGLPNSTYKAGILQNS 264
+ CS S DLNYPS A S +FT+ KF RTVTN+G +TYKA +
Sbjct: 530 SHNCSNPS-----ADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPK 584
Query: 265 KISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFD--GSRIVRSPIVV 320
+++V P++L F++ NEK+S+ +T+ G S ++ W + G+ VRSPIV
Sbjct: 585 NSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVT 642
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 66/116 (56%), Gaps = 8/116 (6%)
Query: 58 IVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMA 117
++ FSSRGP + LKP++ APG I+AA + + + I D Y GT+MA
Sbjct: 308 VITDFSSRGPT--ADNRLKPEVVAPGNWIIAARASGTSMGQPINDY----YTAAPGTAMA 361
Query: 118 CPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHINPVKA 173
PH AG+AA + HP W+P +K+A++ TA + + A+ AYG+G +N KA
Sbjct: 362 TPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDE--IADIAYGAGRVNAYKA 415
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
A FSS GP + D+ APGV+I + KY +SGTSMA P
Sbjct: 178 APFSSVGP--------ELDVMAPGVSICSTL-------------PGGKYGALSGTSMASP 216
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ TA + S F YG G IN
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTATKLGDS------FYYGKGLIN 260
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + ++ YN GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI----------QSTLPGNKYGAYN---GTSMASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS------FYYGKGLIN 269
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 55/110 (50%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + P + KY SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTL----PGN---------KYGAYSGTSMASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + ++ YN GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI----------QSTLPGNKYGAYN---GTSMASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLQNTTTKLGDS------FYYGKGLIN 269
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 54.7 bits (130), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 56/110 (50%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + P + KY SGTSMA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTL----PGN---------KYGAKSGTSMASP 216
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + +S F YG G IN
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGNS------FYYGKGLIN 260
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
A FSS GP + D+ APGV+I + KY +SGT+MA P
Sbjct: 178 APFSSVGP--------ELDVMAPGVSICSTL-------------PGGKYGALSGTAMASP 216
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ TA + S F YG G IN
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTATKLGDS------FYYGKGLIN 260
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 55/110 (50%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + P + KY SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICSTL----PGN---------KYGAKSGTSMASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 54.3 bits (129), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 55/110 (50%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + P + KY SGTSMA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTL----PGN---------KYGAKSGTSMASP 216
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 260
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 55/110 (50%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + P + KY SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSICSTL----PGN---------KYGAKSGTSMASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + ++ YN GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI----------QSTLPGNKYGAYN---GTSMASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + ++ YN GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI----------QSTLPGNKYGAYN---GTSMASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 55/110 (50%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + P + KY SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIXSTL----PGN---------KYGAYSGTSMASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTYLGDS------FYYGKGLIN 269
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + ++ YN GTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI----------QSTLPGNKYGAYN---GTSMASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/110 (37%), Positives = 55/110 (50%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + P + KY SGTSMA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL----PGN---------KYGAKSGTSMASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I++ P + KY SGT+MA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIVSTL----PGN---------KYGAKSGTAMASP 216
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 260
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 56/110 (50%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I++ P + KY SGT+MA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSIVSTL----PGN---------KYGAKSGTAMASP 216
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 260
>pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K)
pdb|1WME|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (1.50 Angstrom, 293 K)
Length = 434
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/95 (43%), Positives = 51/95 (53%), Gaps = 8/95 (8%)
Query: 59 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMAC 118
VA FSSRGP K +KPD+ APG IL+A S LAP S KY + GTSMA
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDS-SFWANHDSKYAYMGGTSMAT 258
Query: 119 PHAAGVAA-----YVKSFHPDWSPSAIKSAIMTTA 148
P AG A +VK+ PS +K+A++ A
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + P + KY SGT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL----PGN---------KYGAYSGTXMASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + P + KY SGT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL----PGN---------KYGAYSGTXMASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + ++ YN GT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI----------QSTLPGNKYGAYN---GTXMASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + ++ YN GT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI----------QSTLPGNKYGAYN---GTXMASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + P + KY SGT MA P
Sbjct: 178 ASFSSVGP--------ELDVMAPGVSICSTL----PGN---------KYGAKSGTXMASP 216
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 217 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 260
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + P + KY SGT MA P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSIQSTL----PGN---------KYGAKSGTXMASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/110 (38%), Positives = 56/110 (50%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I +S L P + KY SGT MA P
Sbjct: 175 ASFSSVGP--------ELDVMAPGVSI---WSTL-PGN---------KYGAKSGTXMASP 213
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 214 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 257
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 48/92 (52%), Gaps = 19/92 (20%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSP 137
DI APGVN+ + Y P S Y ++GTSMA PH AGVAA VK +P WS
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTSMATPHVAGVAALVKQKNPSWSN 237
Query: 138 SAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
I++ + TA + ++ YGSG +N
Sbjct: 238 VQIRNHLKNTATGLGNTN------LYGSGLVN 263
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS GP + D+ APGV+I + ++ YN GTS A P
Sbjct: 187 ASFSSVGP--------ELDVMAPGVSI----------QSTLPGNKYGAYN---GTSXASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+W+ + ++S++ T + S F YG G IN
Sbjct: 226 HVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDS------FYYGKGLIN 269
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSP 137
DI APGVN+ + Y P S Y ++GTSMA PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 138 SAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
I++ + TA + S+ YGSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 51.6 bits (122), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSP 137
DI APGVN+ + Y P S Y ++GTSMA PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 138 SAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
I++ + TA + S+ YGSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSP 137
DI APGVN+ + Y P S Y ++GTSMA PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 138 SAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
I++ + TA + S+ YGSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSP 137
DI APGVN+ + Y P S Y ++GTSMA PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 138 SAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
I++ + TA + S+ YGSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 19/92 (20%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSP 137
DI APGVN+ + Y P S Y ++GTSMA PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTSMATPHVAGAAALVKQKNPSWSN 237
Query: 138 SAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
I++ + TA + S+ YGSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/143 (30%), Positives = 70/143 (48%), Gaps = 22/143 (15%)
Query: 44 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKP-------DISAPGVNI-----LAAYS 91
EI T K + A + +S N +P + P DI+ P V++ LA +
Sbjct: 291 EINSTKACKTAGAKGIIVYS----NSALPGLQNPFLVDANSDITVPSVSVDRATGLALKA 346
Query: 92 PLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPM 151
L S + ++ + Y +GTSMA PH +GVA V S+HP+ S S +++A+ TA +
Sbjct: 347 KLGQ-STTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDL 405
Query: 152 N-SSKNTQAEFAYGSGHINPVKA 173
+ + ++ Q G G IN V A
Sbjct: 406 SVAGRDNQT----GYGMINAVAA 424
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS G + ++ APG + + Y P + Y ++GTSMA P
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTY----PTN---------TYATLNGTSMASP 224
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+ S S +++ + +TA + SS F YG G IN
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGLIN 268
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS G + ++ APG + + Y P + Y ++GTSMA P
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTY----PTN---------TYATLNGTSMASP 224
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+ S S +++ + +TA + SS F YG G IN
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGLIN 268
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS G + ++ APG + + Y P + Y ++GTSMA P
Sbjct: 187 ASFSSVGA--------ELEVMAPGAGVYSTY----PTN---------TYATLNGTSMASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+ S S +++ + +TA + SS F YG G IN
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGLIN 269
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS G + ++ APG + + Y P + Y ++GTSMA P
Sbjct: 187 ASFSSVGA--------ELEVMAPGAGVYSTY----PTN---------TYATLNGTSMASP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+ S S +++ + +TA + SS F YG G IN
Sbjct: 226 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGLIN 269
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS G + ++ APG + + Y P + Y ++GTSMA P
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTY----PTN---------TYATLNGTSMASP 224
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+ S S +++ + +TA + SS F YG G IN
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGLIN 268
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 19/92 (20%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSP 137
DI APGVN+ + Y P S Y ++GT MA PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 138 SAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
I++ + TA + S+ YGSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 19/92 (20%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSP 137
DI APGVN+ + Y P S Y ++GT MA PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 138 SAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
I++ + TA + S+ YGSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1WMF|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From
Bacillus Sp. Ksm-kp43 (oxidized Form, 1.73 Angstrom)
Length = 434
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 49/95 (51%), Gaps = 8/95 (8%)
Query: 59 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMAC 118
VA FSSRGP K +KPD+ APG IL+A S LAP S KY GTS A
Sbjct: 202 VAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAPDS-SFWANHDSKYAYXGGTSXAT 258
Query: 119 PHAAGVAA-----YVKSFHPDWSPSAIKSAIMTTA 148
P AG A +VK+ PS +K+A++ A
Sbjct: 259 PIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGA 293
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 19/92 (20%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSP 137
DI APGVN+ + Y P S Y ++GT MA PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 138 SAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
I++ + TA + S+ YGSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 52/110 (47%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS G + D+ APGV+I + + YN GTSMA P
Sbjct: 187 ASFSSAGS--------ELDVMAPGVSI----------QSTLPGGTYGAYN---GTSMATP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP W+ + ++ + +TA + SS F YG G IN
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGSS------FYYGKGLIN 269
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS G + ++ APG + + Y P + Y ++GTSMA P
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTY----PTN---------TYATLNGTSMASP 224
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+ S S +++ + +TA + SS F YG G IN
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGLIN 268
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 46/92 (50%), Gaps = 19/92 (20%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSP 137
DI APGVN+ + Y P S Y ++GT MA PH AG AA VK +P WS
Sbjct: 191 DIVAPGVNVQSTY----PGS---------TYASLNGTXMATPHVAGAAALVKQKNPSWSN 237
Query: 138 SAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
I++ + TA + S+ YGSG +N
Sbjct: 238 VQIRNHLKNTATSLGSTN------LYGSGLVN 263
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 22/122 (18%)
Query: 58 IVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMA 117
I ASFS+ G + D++APG +IL+ + R + D Y+ ++GTSMA
Sbjct: 233 IRASFSNYG--------VDVDLAAPGQDILSTVD--SGTRRPVSD----AYSFMAGTSMA 278
Query: 118 CPHAAGVAAYV----KSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHINPVKA 173
PH +GVAA V S + + +P+ +K +++T P N + + A GSG ++ A
Sbjct: 279 TPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG----RLDRALGSGIVDAEAA 334
Query: 174 IN 175
+N
Sbjct: 335 VN 336
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 22/122 (18%)
Query: 58 IVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMA 117
I ASFS+ G + D++APG +IL+ + R + D Y+ ++GTSMA
Sbjct: 233 IRASFSNYG--------VDVDLAAPGQDILSTVD--SGTRRPVSD----AYSFMAGTSMA 278
Query: 118 CPHAAGVAAYV----KSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHINPVKA 173
PH +GVAA V S + + +P+ +K +++T P N + + A GSG ++ A
Sbjct: 279 TPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG----RLDRALGSGIVDAEAA 334
Query: 174 IN 175
+N
Sbjct: 335 VN 336
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 22/122 (18%)
Query: 58 IVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMA 117
I ASFS+ G + D++APG +IL+ + R + D Y+ ++GTSMA
Sbjct: 233 IRASFSNYG--------VDVDLAAPGQDILSTVD--SGTRRPVSD----AYSFMAGTSMA 278
Query: 118 CPHAAGVAAYV----KSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHINPVKA 173
PH +GVAA V S + + +P+ +K +++T P N + + A GSG ++ A
Sbjct: 279 TPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNG----RLDRALGSGIVDAEAA 334
Query: 174 IN 175
+N
Sbjct: 335 VN 336
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS G + ++ APG + + Y P + Y ++GT MA P
Sbjct: 186 ASFSSVGA--------ELEVMAPGAGVYSTY----PTN---------TYATLNGTXMASP 224
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP+ S S +++ + +TA + SS F YG G IN
Sbjct: 225 HVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS------FYYGKGLIN 268
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS G + D+ APGV+I + + YN GT MA P
Sbjct: 187 ASFSSVGS--------ELDVMAPGVSI----------QSTLPGGTYGAYN---GTXMATP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP W+ + ++ + +TA + +S F YG G IN
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS------FYYGKGLIN 269
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 51/110 (46%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS G + D+ APGV+I + + YN GT MA P
Sbjct: 187 ASFSSAGS--------ELDVMAPGVSI----------QSTLPGGTYGAYN---GTCMATP 225
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S HP W+ + ++ + +TA + +S F YG G IN
Sbjct: 226 HVAGAAALILSKHPTWTNAQVRDRLESTATYLGNS------FYYGKGLIN 269
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%), Gaps = 27/110 (24%)
Query: 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACP 119
ASFSS G + ++ APGV++ + Y P + Y ++GTSMA P
Sbjct: 186 ASFSSVGS--------ELEVMAPGVSVYSTY----PSNT---------YTSLNGTSMASP 224
Query: 120 HAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHIN 169
H AG AA + S +P S S +++ + +TA + S F YG G IN
Sbjct: 225 HVAGAAALILSKYPTLSASQVRNRLSSTATNLGDS------FYYGKGLIN 268
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 45/94 (47%), Gaps = 17/94 (18%)
Query: 59 VASFSSRGPNKYVPD--ILKPD--ISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGT 114
VA FSSRG + D I K D ISAPG + + + Y ISGT
Sbjct: 202 VADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDGG-------------YATISGT 248
Query: 115 SMACPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA 148
SMA PHAAG+AA + + P S ++ + T A
Sbjct: 249 SMASPHAAGLAAKIWAQSPAASNVDVRGELQTRA 282
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 17/94 (18%)
Query: 59 VASFSSRG----PNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGT 114
VA +SSRG YV +ISAPG ++ + + + YN ISGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------YNGGYNTISGT 249
Query: 115 SMACPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA 148
SMA PH +G+AA + + +P S + ++S + A
Sbjct: 250 SMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 55/128 (42%), Gaps = 36/128 (28%)
Query: 22 CEEEEARLADAI-IGSDTKNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDIS 80
C AR ADAI +GS T N +SFS+ G DI
Sbjct: 165 CNYSPARAADAITVGSTTSNDSR----------------SSFSNYG--------TCLDIY 200
Query: 81 APGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSPSAI 140
APG +I +++ + N ISGTSMA PH AGVAA +P+ SP+ +
Sbjct: 201 APGSSITSSWY-----------TSNSATNTISGTSMASPHVAGVAALYLDENPNLSPAQV 249
Query: 141 KSAIMTTA 148
+ + T A
Sbjct: 250 TNLLKTRA 257
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 25/89 (28%)
Query: 44 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDE 103
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 278 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 315
Query: 104 RHVKYNIISGTSMACPHAAGVAAYVKSFH 132
Y + GT+MA PH +GV A +++ +
Sbjct: 316 ---SYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 25/89 (28%)
Query: 44 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDE 103
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 278 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 315
Query: 104 RHVKYNIISGTSMACPHAAGVAAYVKSFH 132
Y + GT+MA PH +GV A +++ +
Sbjct: 316 ---SYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 25/89 (28%)
Query: 44 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDE 103
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 278 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 315
Query: 104 RHVKYNIISGTSMACPHAAGVAAYVKSFH 132
Y + GT+MA PH +GV A +++ +
Sbjct: 316 ---SYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 25/89 (28%)
Query: 44 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDE 103
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 278 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 315
Query: 104 RHVKYNIISGTSMACPHAAGVAAYVKSFH 132
Y + GT+MA PH +GV A +++ +
Sbjct: 316 ---SYETLMGTAMATPHVSGVVALIQAAY 341
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 21/106 (19%)
Query: 43 AEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIED 102
AE L SDA ASFS+ G D+ APG +I P A + D
Sbjct: 171 AEALTVGATTSSDAR--ASFSNYGS--------CVDLFAPGASI-----PSAWYTSDTAT 215
Query: 103 ERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA 148
+ ++GTSMA PH AGVAA +P +P+++ SAI+ A
Sbjct: 216 Q------TLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGA 255
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 25/89 (28%)
Query: 44 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDE 103
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 209 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 246
Query: 104 RHVKYNIISGTSMACPHAAGVAAYVKSFH 132
Y + GT+MA PH +GV A +++ +
Sbjct: 247 ---SYETLMGTAMATPHVSGVVALIQAAY 272
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 25/89 (28%)
Query: 44 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDE 103
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 275 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 312
Query: 104 RHVKYNIISGTSMACPHAAGVAAYVKSFH 132
Y + GT+MA PH +GV A +++ +
Sbjct: 313 ---SYETLMGTAMATPHVSGVVALIQAAY 338
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 25/89 (28%)
Query: 44 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDE 103
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 200 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 237
Query: 104 RHVKYNIISGTSMACPHAAGVAAYVKSFH 132
Y + GT+MA PH +GV A +++ +
Sbjct: 238 ---SYETLMGTAMATPHVSGVVALIQAAY 263
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 25/89 (28%)
Query: 44 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDE 103
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 209 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 246
Query: 104 RHVKYNIISGTSMACPHAAGVAAYVKSFH 132
Y + GT+MA PH +GV A +++ +
Sbjct: 247 ---SYETLMGTAMATPHVSGVVALIQAAY 272
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 41.2 bits (95), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 25/89 (28%)
Query: 44 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDE 103
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 198 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 235
Query: 104 RHVKYNIISGTSMACPHAAGVAAYVKSFH 132
Y + GT+MA PH +GV A +++ +
Sbjct: 236 ---SYETLMGTAMATPHVSGVVALIQAAY 261
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 17/94 (18%)
Query: 59 VASFSSRG----PNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGT 114
VA +SSRG YV +ISAPG ++ + + + YN ISGT
Sbjct: 203 VADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW-------------YNGGYNTISGT 249
Query: 115 SMACPHAAGVAAYVKSFHPDWSPSAIKSAIMTTA 148
MA PH +G+AA + + +P S + ++S + A
Sbjct: 250 XMATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 25/89 (28%)
Query: 44 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDE 103
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 198 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 235
Query: 104 RHVKYNIISGTSMACPHAAGVAAYVKSFH 132
Y + GT MA PH +GV A +++ +
Sbjct: 236 ---SYETLMGTXMATPHVSGVVALIQAAY 261
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 25/89 (28%)
Query: 44 EILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDE 103
E++ I +D +ASFS+R +P++SAPGV+IL+ Y D+
Sbjct: 198 EVIAVGAIDSNDN--IASFSNR----------QPEVSAPGVDILSTY----------PDD 235
Query: 104 RHVKYNIISGTSMACPHAAGVAAYVKSFH 132
Y + GT MA PH +GV A +++ +
Sbjct: 236 ---SYETLMGTCMATPHVSGVVALIQAAY 261
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 43/105 (40%), Gaps = 21/105 (20%)
Query: 59 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVK---------YN 109
VA FSSR + APGV IL+ P I E H + Y+
Sbjct: 328 VAGFSSRSDGV--------SVGAPGVTILST----VPGEDSIGYEGHNENVPATNGGTYD 375
Query: 110 IISGTSMACPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSS 154
GTSMA PH GV A + P+ P I+ + TA+ N +
Sbjct: 376 YYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGN 420
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 58/110 (52%), Gaps = 25/110 (22%)
Query: 75 LKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVK----S 130
+KPDI+APG +IL++ + + KY +SGTSM+ P AG+ ++ +
Sbjct: 389 IKPDIAAPGQDILSSVA-------------NNKYAKLSGTSMSAPLVAGIMGLLQKQYET 435
Query: 131 FHPDWSPSA----IKSAIMTTAWPMNSSKNTQAEFA---YGSGHINPVKA 173
+PD +PS K +M++A + ++ +A F+ G+G ++ KA
Sbjct: 436 QYPDMTPSERLDLAKKVLMSSATAL-YDEDEKAYFSPRQQGAGAVDAKKA 484
>pdb|3LXU|X Chain X, Crystal Structure Of Tripeptidyl Peptidase 2 (Tpp Ii)
Length = 1354
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 107 KYNIISGTSMACPHAAGVAAY----VKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFA 162
K + +GTS A PH AG A +K + ++SP +IK AI TA + FA
Sbjct: 454 KSQLXNGTSXAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVD----PFA 509
Query: 163 YGSGHINPVKAINPGLVYGAFKQDYINMLCSMGYDVDK 200
G G +N KA + K + + +G + DK
Sbjct: 510 QGHGLLNVEKAFEHLTEHRQSKDNXLRFSVRVGNNADK 547
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 48/97 (49%), Gaps = 20/97 (20%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSP 137
D++APG +I + Y P S Y +SGTSMA PH AGVA + S S
Sbjct: 201 DVAAPGSSIYSTY----PTS---------TYASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 138 SAIKSAIMTTAWPMNSSKNTQAEFAYGSGHINPVKAI 174
S I++AI TA ++ + A+ G +N KA+
Sbjct: 246 SNIRAAIENTADKISGTGTYWAK-----GRVNAYKAV 277
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 79 ISAPGVNILAAYSPLAPVSRDIEDERHVK--YNIISGTSMACPHAAGVAAYV----KSFH 132
++APG NIL+ D+ V+ Y + +GTSMA PH +GVAA V S
Sbjct: 247 LAAPGTNILSTI--------DVGQAGPVRSSYGMKAGTSMAAPHVSGVAALVISAANSIG 298
Query: 133 PDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHINPVKAIN 175
+PS + ++ T S N + + GSG ++ A+N
Sbjct: 299 KTLTPSELSDILVRTT----SRFNGRLDRGLGSGIVDANAAVN 337
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 18/103 (17%)
Query: 79 ISAPGVNILAAYSPLAPVSRDIEDERHVK--YNIISGTSMACPHAAGVAAYV----KSFH 132
++APG NIL+ D+ V+ Y + +GTSMA PH +GVAA V S
Sbjct: 247 LAAPGTNILSTI--------DVGQAGPVRSSYGMKAGTSMAAPHVSGVAALVISAANSIG 298
Query: 133 PDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHINPVKAIN 175
+PS + ++ T S N + + GSG ++ A+N
Sbjct: 299 KTLTPSELSDILVRTT----SRFNGRLDRGLGSGIVDANAAVN 337
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 20/97 (20%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSP 137
D++APG I + Y P S Y +SGTSMA PH AGVA + S S
Sbjct: 201 DVAAPGSWIYSTY----PTS---------TYASLSGTSMATPHVAGVAGLLASQGR--SA 245
Query: 138 SAIKSAIMTTAWPMNSSKNTQAEFAYGSGHINPVKAI 174
S I++AI TA ++ + A+ G +N KA+
Sbjct: 246 SNIRAAIENTADKISGTGTYWAK-----GRVNAYKAV 277
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor Pro-Ala-Pro-Phe-Ala-Ala-
Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A Synthetic
Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between Proteinase
K And A Synthetic Peptide Leu-Leu-Phe-Asn-Asp At 1.67 A
Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In Potassium
Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase K
From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSP 137
DI PG +IL+ + + +R I SGTSMA PH AG+AAY+ + +
Sbjct: 200 DIFGPGTDILSTW--IGGSTRSI-----------SGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 138 SAIK 141
SA +
Sbjct: 247 SACR 250
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially Modified
Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSP 137
DI PG +IL+ + + +R I SGTSMA PH AG+AAY+ + +
Sbjct: 200 DIFGPGTSILSTW--IGGSTRSI-----------SGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 138 SAIK 141
SA +
Sbjct: 247 SACR 250
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone. An
X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K And
Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between Proteinase
K And A Human Lactoferrin Fragment At 2.9 A Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before High
X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 13/64 (20%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSP 137
DI PG +IL+ + + +R I SGTSMA PH AG+AAY+ + +
Sbjct: 200 DIFGPGTSILSTW--IGGSTRSI-----------SGTSMATPHVAGLAAYLMTLGKTTAA 246
Query: 138 SAIK 141
SA +
Sbjct: 247 SACR 250
>pdb|1XF1|A Chain A, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
pdb|1XF1|B Chain B, Structure Of C5a Peptidase- A Key Virulence Factor From
Streptococcus
Length = 926
Score = 35.4 bits (80), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 17/68 (25%)
Query: 75 LKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVK----S 130
+KPDI+APG +IL++ + + KY +SGTS + P AG+ ++ +
Sbjct: 380 IKPDIAAPGQDILSSVA-------------NNKYAKLSGTSXSAPLVAGIXGLLQKQYET 426
Query: 131 FHPDWSPS 138
+PD +PS
Sbjct: 427 QYPDXTPS 434
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 18/22 (81%)
Query: 107 KYNIISGTSMACPHAAGVAAYV 128
+ N ISGTSMA PH AG+AAY+
Sbjct: 217 RTNTISGTSMATPHIAGLAAYL 238
>pdb|4H6W|A Chain A, Structure Of Prenylagaramide Maturation Protease Paga
pdb|4H6W|B Chain B, Structure Of Prenylagaramide Maturation Protease Paga
Length = 306
Score = 34.7 bits (78), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 29/136 (21%)
Query: 45 ILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDER 104
+L + D P+ FS+ G + Y K I APG +IL A P R
Sbjct: 174 VLAVGAMDDQGKPV--DFSNWG-DAYQ----KQGILAPGKDILGA-KPNGGTIR------ 219
Query: 105 HVKYNIISGTSMACPHAAGVAAYVKSFH------PDWSPSAIKSAIMTTAWPMNSSKNTQ 158
+SGTS A P +GVAA + S PD P +K+A++ +A P N K+T
Sbjct: 220 ------LSGTSFATPIVSGVAALLLSLQIKRGEKPD--PQKVKNALLASATPCN-PKDTD 270
Query: 159 AEFAYGSGHINPVKAI 174
+ G +N + AI
Sbjct: 271 DQSRCLMGKLNILDAI 286
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 52/116 (44%), Gaps = 28/116 (24%)
Query: 59 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMAC 118
+ASFS+ G D+ APGV+I++ I R Y +SGTSMA
Sbjct: 191 LASFSNYGT--------WVDVVAPGVDIVST----------ITGNR---YAYMSGTSMAS 229
Query: 119 PHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHINPVKAI 174
PH AG+AA + S + I+ AI TA + T F Y G IN A+
Sbjct: 230 PHVAGLAALLAS--QGRNNIEIRQAIEQTA---DKISGTGTYFKY--GRINSYNAV 278
>pdb|3F7O|A Chain A, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
pdb|3F7O|B Chain B, Crystal Structure Of Cuticle-degrading Protease From
Paecilomyces Lilacinus (pl646)
Length = 284
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 13/55 (23%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFH 132
DI APG NIL+ + + + N ISGTSMA PH G+ AY+
Sbjct: 203 DIFAPGSNILSTW--IGGTT-----------NTISGTSMATPHIVGLGAYLAGLE 244
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYV-----KSFH 132
DI APGV I + Y Y +SGT+MA PH AG A + +F
Sbjct: 226 DIVAPGVGIKSTYLDSG-------------YAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 133 PDWSPSAIKSAIMTTAWPMNSSKNTQAE 160
S + I + ++ A P+ + QAE
Sbjct: 273 RSLSETEIYAQLVRRATPIGFT--AQAE 298
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYV-----KSFH 132
DI APGV I + Y Y +SGT+MA PH AG A + +F
Sbjct: 226 DIVAPGVGIKSTY-------------LDSGYAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 133 PDWSPSAIKSAIMTTAWPMNSSKNTQAE 160
S + I + ++ A P+ + QAE
Sbjct: 273 RSLSETEIYAQLVRRATPIGFT--AQAE 298
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 20/88 (22%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYV-----KSFH 132
DI APGV I + Y Y +SGT+MA PH AG A + +F
Sbjct: 226 DIVAPGVGIKSTY-------------LDSGYAELSGTAMAAPHVAGALALIINLAEDAFK 272
Query: 133 PDWSPSAIKSAIMTTAWPMNSSKNTQAE 160
S + I + ++ A P+ + QAE
Sbjct: 273 RSLSETEIYAQLVRRATPIGFT--AQAE 298
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 32.3 bits (72), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 15/19 (78%), Positives = 15/19 (78%)
Query: 108 YNIISGTSMACPHAAGVAA 126
Y ISGTSMA PH AGVAA
Sbjct: 213 YKTISGTSMATPHVAGVAA 231
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 18/87 (20%)
Query: 78 DISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYV-----KSFH 132
DI APGV I + Y Y +SGT+MA PH AG A + +F
Sbjct: 208 DIVAPGVGIKSTY-------------LDSGYAELSGTAMAAPHVAGALALIINLAEDAFK 254
Query: 133 PDWSPSAIKSAIMTTAWPMNSSKNTQA 159
S + I + ++ A P+ + +
Sbjct: 255 RSLSETEIYAQLVRRATPIGFTAQAEG 281
>pdb|3QFH|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|B Chain B, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|C Chain C, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|D Chain D, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|E Chain E, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|F Chain F, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|G Chain G, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus.
pdb|3QFH|H Chain H, 2.05 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) From
Staphylococcus Aureus
Length = 447
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 25/129 (19%)
Query: 59 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIIS------ 112
++ FS+ G N DI+APG + AY V + + + K NI++
Sbjct: 325 LSEFSNFGMNY-------TDIAAPGGSF--AYLNQFGVDKWMNEGYMHKENILTTANNGR 375
Query: 113 -----GTSMACPHAAG-VAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSG 166
GTS+A P +G +A + +H + P + + +SKN + YG G
Sbjct: 376 YIYQAGTSLATPKVSGALALIIDKYHLEKHPDKA----IELLYQHGTSKNNKPFSRYGHG 431
Query: 167 HINPVKAIN 175
++ KA+N
Sbjct: 432 ELDVYKALN 440
>pdb|3BBO|J Chain J, Homology Model For The Spinach Chloroplast 50s Subunit
Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
Length = 197
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 33 IIGSDTKNPQAEILKTSVIKDSDAPIVASFSSRGPNKYVPDI-LKPDISAP-GVNILA 88
I GS T +I+K+ + KD D +V+ R +Y+ ++ L PD++A +N+ A
Sbjct: 139 IFGSVTAQDLVDIIKSQLQKDIDKRLVSLPEIRETGEYIAELKLHPDVTARVKINVFA 196
>pdb|3T41|A Chain A, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
pdb|3T41|B Chain B, 1.95 Angstrom Resolution Crystal Structure Of Epidermin
Leader Peptide Processing Serine Protease (Epip) S393a
Mutant From Staphylococcus Aureus
Length = 471
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 25/129 (19%)
Query: 59 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIIS------ 112
++ FS+ G N DI+APG + AY V + + + K NI++
Sbjct: 349 LSEFSNFGMNY-------TDIAAPGGSF--AYLNQFGVDKWMNEGYMHKENILTTANNGR 399
Query: 113 -----GTSMACPHAAG-VAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSG 166
GT++A P +G +A + +H + P + + +SKN + YG G
Sbjct: 400 YIYQAGTALATPKVSGALALIIDKYHLEKHPDKA----IELLYQHGTSKNNKPFSRYGHG 455
Query: 167 HINPVKAIN 175
++ KA+N
Sbjct: 456 ELDVYKALN 464
>pdb|4AKT|A Chain A, Patg Macrocyclase In Complex With Peptide
pdb|4AKT|B Chain B, Patg Macrocyclase In Complex With Peptide
Length = 360
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 16/81 (19%)
Query: 76 KPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDW 135
K I APG IL A P + E V+ ++GTSMA P G++A + S
Sbjct: 265 KEGILAPGEEILGAQ----PCT-----EEPVR---LTGTSMAAPVMTGISALLMSLQVQQ 312
Query: 136 ----SPSAIKSAIMTTAWPMN 152
A+++A++ TA P +
Sbjct: 313 GKPVDAEAVRTALLKTAIPCD 333
>pdb|4AKS|A Chain A, Patg Macrocyclase Domain
pdb|4AKS|B Chain B, Patg Macrocyclase Domain
Length = 360
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 16/81 (19%)
Query: 76 KPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDW 135
K I APG IL A P + E V+ ++GTSMA P G++A + S
Sbjct: 265 KEGILAPGEEILGAQ----PCT-----EEPVR---LTGTSMAAPVMTGISALLMSLQVQQ 312
Query: 136 ----SPSAIKSAIMTTAWPMN 152
A+++A++ TA P +
Sbjct: 313 GKPVDAEAVRTALLKTAIPCD 333
>pdb|4H6X|A Chain A, Structure Of Patellamide Maturation Protease Patg
pdb|4H6X|B Chain B, Structure Of Patellamide Maturation Protease Patg
Length = 357
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 16/81 (19%)
Query: 76 KPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDW 135
K I APG IL A P + E V+ ++GTSMA P G++A + S
Sbjct: 247 KEGILAPGEEILGAQ----PCT-----EEPVR---LTGTSMAAPVMTGISALLMSLQVQQ 294
Query: 136 S----PSAIKSAIMTTAWPMN 152
A+++A++ TA P +
Sbjct: 295 GKPVDAEAVRTALLKTAIPCD 315
>pdb|4FYE|A Chain A, Crystal Structure Of A Legionella Phosphoinositide
Phosphatase, Sidf
pdb|4FYF|A Chain A, Structural Basis For Substrate Recognition By A Novel
Legionella Phosphoinositide Phosphatase
pdb|4FYG|A Chain A, Structural Basis For Substrate Recognition By A Novel
Legionella Phosphoinositide Phosphatase
Length = 761
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 47/123 (38%), Gaps = 11/123 (8%)
Query: 42 QAEILKTSVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIE 101
Q E+++T + D ++ P +Y PD L PD ++ Y P+S E
Sbjct: 298 QEEVIQTLAQRQIDRMTNEDLWNKIPEEYRPDELPPDAEKARAQLIKLYVEHNPLSV-TE 356
Query: 102 DERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKNTQAEF 161
V + +G +A + YV+ + S K I T + NT+ E
Sbjct: 357 CYTQV---VTAGQRVAAENQKEQFEYVRQMMDAFDGSKAKITIQTGS-------NTEVET 406
Query: 162 AYG 164
A G
Sbjct: 407 AVG 409
>pdb|3FTN|A Chain A, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE
BY EXCHANGE Of The Cofactor Binding Domain Res 153-295
Of T. Brockii Adh By C. Beijerinckii Adh
pdb|3FTN|B Chain B, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE
BY EXCHANGE Of The Cofactor Binding Domain Res 153-295
Of T. Brockii Adh By C. Beijerinckii Adh
pdb|3FTN|C Chain C, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE
BY EXCHANGE Of The Cofactor Binding Domain Res 153-295
Of T. Brockii Adh By C. Beijerinckii Adh
pdb|3FTN|D Chain D, Q165eS254K DOUBLE MUTANT CHIMERA OF ALCOHOL DEHYDROGENASE
BY EXCHANGE Of The Cofactor Binding Domain Res 153-295
Of T. Brockii Adh By C. Beijerinckii Adh
Length = 352
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 61/135 (45%), Gaps = 16/135 (11%)
Query: 190 MLCSMGYDVDKLRTISGDNSTCSKGSEKTSP----KDLNYPSMAAQVSSGESFTIKFPRT 245
M + G VD++ G + T S+ + P ++NY SG++ I PR
Sbjct: 228 MKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHG------SGDALLI--PRV 279
Query: 246 VTNIGLPNSTYKAGILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAAL 305
G+ + T K G+ ++ + + +++ ++ ++ K +VT +G +I A +
Sbjct: 280 EWGCGMAHKTIKGGLCPGGRLRMERLIDLVFYKRVDPSK--LVTHVFRGFD--NIEKAFM 335
Query: 306 VWFDGSRIVRSPIVV 320
+ D + + P+V+
Sbjct: 336 LMKDKPKDLIKPVVI 350
>pdb|1COY|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
pdb|3COX|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
Length = 507
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 48/125 (38%), Gaps = 19/125 (15%)
Query: 187 YINMLCSM---GYDVDKLRTISGDNSTCSKGSEKTSPKDLNYPSMAAQVSSGESFTIKFP 243
Y+ +L S G V + R + G + G +PK + + V S E + FP
Sbjct: 92 YVGVLDSERFSGIKVYQGRGVGG--GSLVNGGMAVTPKRNYFEEILPSVDSNEMYNKYFP 149
Query: 244 RTVTNIGLPN---------STYKAG-----ILQNSKISVNVVPEVLSFRSLNEKKSFIVT 289
R T +G+ N YK Q S + VP V F + ++ + VT
Sbjct: 150 RANTGLGVNNIDQAWFESTEWYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVT 209
Query: 290 VTGKG 294
+G G
Sbjct: 210 KSGLG 214
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 28.1 bits (61), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 108 YN-IISGTSMACPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSKN-TQAEFAYGS 165
YN +++GTS A P +G A + S +PD S ++ + +A +++ + +
Sbjct: 328 YNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAKHQPVMVSYTSST 387
Query: 166 GHINPVKAI 174
G + VK +
Sbjct: 388 GKVRDVKGL 396
>pdb|3FSR|A Chain A, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By
C. Beijerinckii Adh
pdb|3FSR|B Chain B, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By
C. Beijerinckii Adh
pdb|3FSR|C Chain C, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By
C. Beijerinckii Adh
pdb|3FSR|D Chain D, Chimera Of Alcohol Dehydrogenase By Exchange Of The
Cofactor Binding Domain Res 153-295 Of T. Brockii Adh By
C. Beijerinckii Adh
Length = 352
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/135 (20%), Positives = 60/135 (44%), Gaps = 16/135 (11%)
Query: 190 MLCSMGYDVDKLRTISGDNSTCSKGSEKTSP----KDLNYPSMAAQVSSGESFTIKFPRT 245
M + G VD++ G + T S+ P ++NY SG++ I PR
Sbjct: 228 MKLTNGKGVDRVIMAGGGSETLSQAVSMVKPGGIISNINYHG------SGDALLI--PRV 279
Query: 246 VTNIGLPNSTYKAGILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAAL 305
G+ + T K G+ ++ + + +++ ++ ++ K +VT +G +I A +
Sbjct: 280 EWGCGMAHKTIKGGLCPGGRLRMERLIDLVFYKRVDPSK--LVTHVFRGFD--NIEKAFM 335
Query: 306 VWFDGSRIVRSPIVV 320
+ D + + P+V+
Sbjct: 336 LMKDKPKDLIKPVVI 350
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,943,096
Number of Sequences: 62578
Number of extensions: 408693
Number of successful extensions: 796
Number of sequences better than 100.0: 115
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 661
Number of HSP's gapped (non-prelim): 118
length of query: 333
length of database: 14,973,337
effective HSP length: 99
effective length of query: 234
effective length of database: 8,778,115
effective search space: 2054078910
effective search space used: 2054078910
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)