Query 044126
Match_columns 333
No_of_seqs 243 out of 2456
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 11:42:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044126.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044126hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05562 Peptidases_S53_like Pe 99.8 1.3E-20 2.7E-25 178.2 8.1 98 60-175 176-274 (275)
2 cd07478 Peptidases_S8_CspA-lik 99.8 1.8E-19 3.9E-24 181.4 10.0 95 55-166 355-455 (455)
3 cd07474 Peptidases_S8_subtilis 99.8 2.7E-19 5.8E-24 169.1 9.6 107 55-173 188-295 (295)
4 cd07497 Peptidases_S8_14 Pepti 99.8 4.8E-19 1E-23 170.2 8.7 88 56-148 218-311 (311)
5 cd07475 Peptidases_S8_C5a_Pept 99.8 6.1E-19 1.3E-23 170.7 9.4 106 55-175 230-346 (346)
6 cd07479 Peptidases_S8_SKI-1_li 99.8 1.9E-18 4.2E-23 161.4 9.0 90 50-152 157-254 (255)
7 cd07489 Peptidases_S8_5 Peptid 99.7 4.4E-18 9.4E-23 162.9 8.8 106 60-178 189-301 (312)
8 cd05561 Peptidases_S8_4 Peptid 99.7 7.3E-18 1.6E-22 156.0 8.8 90 52-166 150-239 (239)
9 cd04857 Peptidases_S8_Tripepti 99.7 1E-17 2.2E-22 165.9 8.7 83 56-151 326-412 (412)
10 PF00082 Peptidase_S8: Subtila 99.7 3.5E-18 7.5E-23 159.7 5.0 113 52-175 170-282 (282)
11 PTZ00262 subtilisin-like prote 99.7 7.4E-18 1.6E-22 172.9 6.5 88 76-180 531-618 (639)
12 cd07493 Peptidases_S8_9 Peptid 99.7 2.3E-17 5.1E-22 153.9 8.9 84 51-149 178-261 (261)
13 cd04847 Peptidases_S8_Subtilis 99.7 2.1E-17 4.5E-22 156.7 8.4 87 61-149 200-291 (291)
14 cd07481 Peptidases_S8_Bacillop 99.7 1.4E-17 3E-22 155.7 7.1 85 50-149 178-264 (264)
15 cd07487 Peptidases_S8_1 Peptid 99.6 4.6E-16 1E-20 144.3 9.8 85 59-149 180-264 (264)
16 cd07476 Peptidases_S8_thiazoli 99.6 6.9E-16 1.5E-20 145.3 8.5 87 50-154 165-255 (267)
17 cd07483 Peptidases_S8_Subtilis 99.6 8.2E-16 1.8E-20 146.3 7.2 72 58-149 220-291 (291)
18 cd04843 Peptidases_S8_11 Pepti 99.6 3.3E-15 7.1E-20 141.4 9.6 81 58-149 192-277 (277)
19 cd04842 Peptidases_S8_Kp43_pro 99.6 5.8E-15 1.3E-19 139.3 9.3 85 59-149 201-293 (293)
20 cd04077 Peptidases_S8_PCSK9_Pr 99.6 5.5E-15 1.2E-19 137.3 8.4 80 52-150 176-255 (255)
21 cd07490 Peptidases_S8_6 Peptid 99.5 1E-14 2.2E-19 134.9 8.3 87 53-149 158-254 (254)
22 cd07498 Peptidases_S8_15 Pepti 99.5 1.4E-14 3E-19 133.2 7.7 84 52-147 159-242 (242)
23 KOG1114 Tripeptidyl peptidase 99.5 2.3E-14 5E-19 149.1 9.7 102 57-175 452-557 (1304)
24 cd04852 Peptidases_S8_3 Peptid 99.5 1.4E-14 3E-19 138.4 7.3 72 75-149 236-307 (307)
25 cd07484 Peptidases_S8_Thermita 99.5 1.3E-14 2.8E-19 135.0 6.4 78 52-151 182-259 (260)
26 cd07485 Peptidases_S8_Fervidol 99.5 2.8E-14 6E-19 134.1 8.3 83 50-147 189-273 (273)
27 cd07496 Peptidases_S8_13 Pepti 99.5 3.3E-14 7.2E-19 134.4 8.7 90 50-147 194-285 (285)
28 cd07473 Peptidases_S8_Subtilis 99.5 3.5E-14 7.6E-19 131.8 8.7 78 52-149 182-259 (259)
29 cd07494 Peptidases_S8_10 Pepti 99.5 7.6E-14 1.6E-18 133.4 11.0 79 71-154 194-288 (298)
30 cd07480 Peptidases_S8_12 Pepti 99.5 4E-14 8.8E-19 134.7 8.5 105 50-171 190-296 (297)
31 cd07477 Peptidases_S8_Subtilis 99.5 5.2E-14 1.1E-18 128.0 8.3 77 50-147 153-229 (229)
32 cd04059 Peptidases_S8_Protein_ 99.5 3.4E-14 7.3E-19 134.6 7.3 80 52-149 211-297 (297)
33 cd07488 Peptidases_S8_2 Peptid 99.4 7.1E-14 1.5E-18 130.3 4.4 114 15-147 123-246 (247)
34 cd07492 Peptidases_S8_8 Peptid 99.4 5.5E-13 1.2E-17 121.3 8.1 61 76-149 162-222 (222)
35 cd07482 Peptidases_S8_Lantibio 99.4 6.2E-13 1.3E-17 125.4 7.8 89 52-147 196-294 (294)
36 cd04848 Peptidases_S8_Autotran 99.4 6.3E-13 1.4E-17 122.7 6.8 84 50-149 182-267 (267)
37 KOG4266 Subtilisin kexin isozy 99.4 1.8E-12 4E-17 130.4 9.9 110 50-176 349-466 (1033)
38 KOG1153 Subtilisin-related pro 99.3 3.4E-13 7.4E-18 131.7 3.1 82 49-149 371-461 (501)
39 cd07491 Peptidases_S8_7 Peptid 99.1 4.7E-11 1E-15 111.3 5.7 62 52-131 168-229 (247)
40 cd00306 Peptidases_S8_S53 Pept 99.1 2E-10 4.4E-15 103.1 7.9 76 53-147 165-241 (241)
41 PF06280 DUF1034: Fn3-like dom 98.9 2E-08 4.3E-13 82.5 10.7 81 238-319 8-112 (112)
42 COG1404 AprE Subtilisin-like s 98.4 4.7E-07 1E-11 89.5 7.7 101 55-175 314-420 (508)
43 cd04056 Peptidases_S53 Peptida 97.5 0.00015 3.2E-09 71.3 5.1 48 72-133 249-299 (361)
44 PF14874 PapD-like: Flagellar- 97.0 0.017 3.7E-07 45.9 12.2 81 238-321 20-100 (102)
45 cd02133 PA_C5a_like PA_C5a_lik 96.7 0.0024 5.1E-08 54.6 4.4 48 14-68 93-141 (143)
46 PF10633 NPCBM_assoc: NPCBM-as 96.1 0.033 7.2E-07 42.4 7.7 58 238-295 5-63 (78)
47 PF11614 FixG_C: IG-like fold 95.1 0.25 5.3E-06 40.6 9.7 57 238-295 31-87 (118)
48 KOG3526 Subtilisin-like propro 94.2 0.0035 7.6E-08 61.3 -3.8 85 108-195 378-474 (629)
49 PF00345 PapD_N: Pili and flag 94.1 1.4 3E-05 36.1 12.1 68 239-308 15-89 (122)
50 PF06030 DUF916: Bacterial pro 93.5 1.1 2.4E-05 37.3 10.3 69 238-308 27-119 (121)
51 COG1470 Predicted membrane pro 86.9 9.5 0.00021 38.9 11.8 85 222-309 270-360 (513)
52 COG1470 Predicted membrane pro 86.9 6.1 0.00013 40.2 10.4 71 238-308 397-468 (513)
53 PF00635 Motile_Sperm: MSP (Ma 86.8 6.5 0.00014 31.1 8.9 54 238-294 18-71 (109)
54 TIGR02745 ccoG_rdxA_fixG cytoc 83.5 6.4 0.00014 40.0 9.0 56 238-294 346-401 (434)
55 cd02120 PA_subtilisin_like PA_ 82.6 1.5 3.2E-05 35.9 3.4 30 14-45 97-126 (126)
56 COG4934 Predicted protease [Po 79.0 1.9 4E-05 48.4 3.6 26 107-132 472-497 (1174)
57 PF07718 Coatamer_beta_C: Coat 76.9 12 0.00026 32.1 7.2 69 238-308 69-138 (140)
58 smart00635 BID_2 Bacterial Ig- 75.3 11 0.00024 28.6 6.1 44 267-315 4-48 (81)
59 PF07610 DUF1573: Protein of u 73.2 14 0.00031 25.0 5.6 44 244-290 2-45 (45)
60 PF07705 CARDB: CARDB; InterP 67.4 52 0.0011 24.9 9.2 52 238-293 19-72 (101)
61 PLN03080 Probable beta-xylosid 60.1 25 0.00054 38.5 7.1 53 239-292 685-744 (779)
62 PF14016 DUF4232: Protein of u 54.5 1.2E+02 0.0026 24.9 9.4 78 238-318 18-112 (131)
63 KOG3525 Subtilisin-like propro 54.0 6.6 0.00014 39.8 1.4 67 110-176 251-325 (431)
64 PF05506 DUF756: Domain of unk 53.0 1E+02 0.0022 23.6 8.9 55 239-302 19-73 (89)
65 PF12690 BsuPI: Intracellular 52.9 32 0.0007 26.5 4.8 20 274-294 53-72 (82)
66 PRK15308 putative fimbrial pro 49.8 65 0.0014 30.0 7.1 54 239-293 32-101 (234)
67 cd02127 PA_hPAP21_like PA_hPAP 49.1 20 0.00044 29.6 3.3 32 12-45 85-116 (118)
68 cd04818 PA_subtilisin_1 PA_sub 48.9 20 0.00042 29.1 3.2 26 13-40 88-113 (118)
69 cd02126 PA_EDEM3_like PA_EDEM3 47.9 20 0.00044 29.8 3.2 26 12-39 95-120 (126)
70 PRK15098 beta-D-glucoside gluc 46.9 47 0.001 36.2 6.6 54 238-294 667-729 (765)
71 PF02845 CUE: CUE domain; Int 45.4 22 0.00048 23.6 2.5 24 125-148 5-28 (42)
72 cd00538 PA PA: Protease-associ 45.2 26 0.00057 28.1 3.4 26 12-39 95-120 (126)
73 cd04816 PA_SaNapH_like PA_SaNa 44.2 24 0.00053 28.8 3.1 26 12-39 91-116 (122)
74 PF05753 TRAP_beta: Translocon 43.7 1.9E+02 0.0041 25.8 8.9 69 238-309 38-114 (181)
75 PF04744 Monooxygenase_B: Mono 42.6 2.8E+02 0.0062 27.7 10.5 77 238-318 263-372 (381)
76 cd00407 Urease_beta Urease bet 42.2 53 0.0012 26.6 4.6 50 238-289 18-82 (101)
77 TIGR01451 B_ant_repeat conserv 42.0 1.1E+02 0.0024 21.3 5.8 38 238-277 12-50 (53)
78 PRK13203 ureB urease subunit b 40.4 51 0.0011 26.8 4.2 50 238-289 18-82 (102)
79 PF00699 Urease_beta: Urease b 39.0 1.6E+02 0.0034 23.9 6.8 49 238-289 17-81 (100)
80 PRK13202 ureB urease subunit b 39.0 60 0.0013 26.4 4.4 48 240-289 21-83 (104)
81 TIGR00192 urease_beta urease, 39.0 60 0.0013 26.3 4.4 50 238-289 18-82 (101)
82 PF13598 DUF4139: Domain of un 37.1 2.2E+02 0.0047 27.0 8.9 21 301-321 289-314 (317)
83 PRK09918 putative fimbrial cha 36.9 2.9E+02 0.0062 25.4 9.3 87 238-326 38-139 (230)
84 PF13940 Ldr_toxin: Toxin Ldr, 36.2 31 0.00068 22.3 1.9 13 116-128 14-26 (35)
85 PRK15019 CsdA-binding activato 35.9 37 0.00081 29.3 3.0 32 110-142 78-109 (147)
86 TIGR00845 caca sodium/calcium 35.4 4.2E+02 0.0092 29.8 11.5 26 124-149 322-347 (928)
87 cd02125 PA_VSR PA_VSR: Proteas 34.8 43 0.00094 27.9 3.2 27 11-39 95-121 (127)
88 cd02130 PA_ScAPY_like PA_ScAPY 34.5 44 0.00096 27.2 3.2 28 13-42 92-119 (122)
89 PF02368 Big_2: Bacterial Ig-l 34.3 40 0.00087 25.1 2.7 37 267-309 4-40 (79)
90 TIGR03391 FeS_syn_CsdE cystein 34.3 41 0.0009 28.7 3.0 33 109-142 72-104 (138)
91 PF08260 Kinin: Insect kinin p 33.7 19 0.00042 15.8 0.5 6 61-66 3-8 (8)
92 PRK13205 ureB urease subunit b 33.2 74 0.0016 27.7 4.3 50 238-289 18-82 (162)
93 PF04255 DUF433: Protein of un 32.4 39 0.00084 24.0 2.2 39 107-145 10-54 (56)
94 PRK13201 ureB urease subunit b 32.2 82 0.0018 26.8 4.3 50 238-289 18-82 (136)
95 PF00553 CBM_2: Cellulose bind 32.0 2.5E+02 0.0055 22.0 9.0 30 240-269 15-45 (101)
96 PRK09296 cysteine desufuration 31.7 49 0.0011 28.3 3.0 32 110-142 68-99 (138)
97 PF00927 Transglut_C: Transglu 31.4 2.6E+02 0.0056 21.9 8.2 55 238-294 15-78 (107)
98 PF11611 DUF4352: Domain of un 30.6 1.7E+02 0.0038 23.1 6.1 56 238-294 36-103 (123)
99 smart00546 CUE Domain that may 30.2 79 0.0017 20.9 3.3 25 124-148 5-29 (43)
100 PF01345 DUF11: Domain of unkn 29.8 1.3E+02 0.0027 22.2 4.8 30 238-268 41-72 (76)
101 COG2166 sufE Cysteine desulfur 29.8 51 0.0011 28.4 2.8 33 108-141 71-103 (144)
102 PRK15299 fimbrial chaperone pr 29.2 4.3E+02 0.0093 24.2 9.1 60 238-298 36-101 (227)
103 PRK13204 ureB urease subunit b 28.8 96 0.0021 27.1 4.3 50 238-289 41-105 (159)
104 PF02657 SufE: Fe-S metabolism 28.6 61 0.0013 27.0 3.1 32 110-142 59-90 (125)
105 PRK15295 fimbrial assembly cha 28.0 4.7E+02 0.01 23.9 9.5 56 238-296 33-95 (226)
106 PRK15211 fimbrial chaperone pr 28.0 4.8E+02 0.01 24.0 9.4 60 238-298 36-99 (229)
107 PRK09926 putative chaperone pr 27.7 4.4E+02 0.0096 24.4 9.0 60 238-298 39-107 (246)
108 PRK15188 fimbrial chaperone pr 26.6 5.1E+02 0.011 23.9 9.6 60 238-298 41-104 (228)
109 PRK15218 fimbrial chaperone pr 25.5 4.1E+02 0.0088 24.5 8.2 60 238-298 32-99 (226)
110 PRK13198 ureB urease subunit b 24.5 1.3E+02 0.0028 26.3 4.3 50 238-289 46-110 (158)
111 COG4856 Uncharacterized protei 23.3 2.9E+02 0.0064 27.7 7.0 54 240-293 92-147 (403)
112 PRK13192 bifunctional urease s 22.4 1.2E+02 0.0027 27.6 4.0 50 238-289 127-191 (208)
113 TIGR03079 CH4_NH3mon_ox_B meth 21.9 93 0.002 31.0 3.3 51 238-292 282-354 (399)
114 COG1361 S-layer domain [Cell e 21.4 8.7E+02 0.019 24.7 10.6 79 239-317 168-253 (500)
115 PRK15224 pili assembly chapero 21.0 6.8E+02 0.015 23.3 9.2 58 238-298 42-104 (237)
116 COG0065 LeuC 3-isopropylmalate 20.5 93 0.002 31.3 3.0 60 55-128 353-413 (423)
117 COG3121 FimC P pilus assembly 20.5 6.4E+02 0.014 23.2 8.5 60 238-298 41-105 (235)
118 PRK15253 putative fimbrial ass 20.4 5.7E+02 0.012 23.8 8.2 60 238-298 47-114 (242)
No 1
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.82 E-value=1.3e-20 Score=178.18 Aligned_cols=98 Identities=35% Similarity=0.390 Sum_probs=82.5
Q ss_pred ecccCCCCCCCCCCCcCCcEEeCCC-ceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhhCCCCCHH
Q 044126 60 ASFSSRGPNKYVPDILKPDISAPGV-NILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSPS 138 (333)
Q Consensus 60 a~fSs~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~ 138 (333)
+.|+++||.. +..+||||+|||. ++.+.+.. +.|..++|||||||||||++|||++++|+|++.
T Consensus 176 ~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-------------~~~~~~sGTS~AaP~VaG~aALl~~~~p~lt~~ 240 (275)
T cd05562 176 DPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-------------DGPPNFFGTSAAAPHAAGVAALVLSANPGLTPA 240 (275)
T ss_pred cCCcccCcCC--CCCcCCeEEcCCcccccCCCcC-------------CceeecccchHHHHHHHHHHHHHHHhCCCCCHH
Confidence 3466777764 6789999999975 44444332 478999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCccccCCCCcCccccCC
Q 044126 139 AIKSAIMTTAWPMNSSKNTQAEFAYGSGHINPVKAIN 175 (333)
Q Consensus 139 ~ik~~L~~tA~~~~~~~~~~~~~~~G~G~id~~~A~~ 175 (333)
|||++|+++|+++... ..+..||||+||+.+|++
T Consensus 241 ~v~~~L~~tA~~~~~~---g~d~~~G~G~vda~~Av~ 274 (275)
T cd05562 241 DIRDALRSTALDMGEP---GYDNASGSGLVDADRAVA 274 (275)
T ss_pred HHHHHHHHhCcccCCC---CCCCCcCcCcccHHHHhh
Confidence 9999999999987642 467899999999999986
No 2
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.79 E-value=1.8e-19 Score=181.36 Aligned_cols=95 Identities=35% Similarity=0.485 Sum_probs=84.3
Q ss_pred CCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhhC--
Q 044126 55 DAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFH-- 132 (333)
Q Consensus 55 ~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-- 132 (333)
..+.++.||||||+. ++++||||+|||++|+++.+. +.|..++|||||||||||++|||+|++
T Consensus 355 ~~~~~~~~Ss~G~~~--~~~~kpdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~ 419 (455)
T cd07478 355 NNNSIAIFSGRGPTR--DGRIKPDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIV 419 (455)
T ss_pred CCCcccCccCCCcCC--CCCcCceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchh
Confidence 345799999999986 789999999999999999875 479999999999999999999999975
Q ss_pred ----CCCCHHHHHHHHHhcCCCCCCCCCCCCccccCCC
Q 044126 133 ----PDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSG 166 (333)
Q Consensus 133 ----p~~sp~~ik~~L~~tA~~~~~~~~~~~~~~~G~G 166 (333)
|.|++++||.+|+++|++.... .+++.++|||
T Consensus 420 ~~~~p~~~~~~ik~~L~~tA~~~~~~--~~pn~~~GyG 455 (455)
T cd07478 420 RGNDPYLYGEKIKTYLIRGARRRPGD--EYPNPEWGYG 455 (455)
T ss_pred ccCCCCCCHHHHHHHHHHhCccCCCC--CCCCCCCCCC
Confidence 5679999999999999988743 4578899998
No 3
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.79 E-value=2.7e-19 Score=169.12 Aligned_cols=107 Identities=44% Similarity=0.695 Sum_probs=89.5
Q ss_pred CCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhhCCC
Q 044126 55 DAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPD 134 (333)
Q Consensus 55 ~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ 134 (333)
.......|+++|+.. ....+||||+|||++|.+++... ...|..++|||||||+|||++|||++++|.
T Consensus 188 ~~~~~~~~~s~~~~~-~~~~~kpdv~apG~~i~~~~~~~-----------~~~~~~~~GTS~AaP~vaG~aAll~~~~p~ 255 (295)
T cd07474 188 EADTVGPSSSRGPPT-SDSAIKPDIVAPGVDIMSTAPGS-----------GTGYARMSGTSMAAPHVAGAAALLKQAHPD 255 (295)
T ss_pred CCCceeccCCCCCCC-CCCCcCCCEECCcCceEeeccCC-----------CCceEEeccHHHHHHHHHHHHHHHHhhCCC
Confidence 455666677666543 37889999999999999987753 146899999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCCCCCCC-CCCccccCCCCcCcccc
Q 044126 135 WSPSAIKSAIMTTAWPMNSSKN-TQAEFAYGSGHINPVKA 173 (333)
Q Consensus 135 ~sp~~ik~~L~~tA~~~~~~~~-~~~~~~~G~G~id~~~A 173 (333)
|++++||++|++||.++..... ..+...+|+|+||+.+|
T Consensus 256 l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 256 WSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred CCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 9999999999999998876433 23467899999999986
No 4
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.77 E-value=4.8e-19 Score=170.22 Aligned_cols=88 Identities=34% Similarity=0.436 Sum_probs=73.3
Q ss_pred CCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhhCC--
Q 044126 56 APIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHP-- 133 (333)
Q Consensus 56 ~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p-- 133 (333)
.+.++.||||||+. ++++||||+|||++|+++.+....... ......|..++|||||||||||++|||+|++|
T Consensus 218 ~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~~---~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~ 292 (311)
T cd07497 218 SGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGGA---LDGNEAFDLFGGTSMATPMTAGSAALVISALKEK 292 (311)
T ss_pred CCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCcc---cCCCcceeeecchhhhhHHHHHHHHHHHHHhhhh
Confidence 57789999999987 789999999999999988765321010 11124699999999999999999999999876
Q ss_pred ----CCCHHHHHHHHHhcC
Q 044126 134 ----DWSPSAIKSAIMTTA 148 (333)
Q Consensus 134 ----~~sp~~ik~~L~~tA 148 (333)
.++|++||++|++||
T Consensus 293 ~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 293 EGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred cCCCCCCHHHHHHHHHhcC
Confidence 589999999999997
No 5
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.77 E-value=6.1e-19 Score=170.70 Aligned_cols=106 Identities=41% Similarity=0.534 Sum_probs=90.2
Q ss_pred CCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhh---
Q 044126 55 DAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSF--- 131 (333)
Q Consensus 55 ~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~--- 131 (333)
..+.++.||+|||.. ...+||||+|||.+|+++... +.|..++|||||||+|||++|||+|+
T Consensus 230 ~~~~~~~~S~~G~~~--~~~~~pdi~apG~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~ 294 (346)
T cd07475 230 NGGQMSGFSSWGPTP--DLDLKPDITAPGGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKE 294 (346)
T ss_pred CCCccCCCcCCCCCc--ccCcCCeEEeCCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHh
Confidence 678899999999986 788999999999999988765 46889999999999999999999997
Q ss_pred -CCCCCHHH----HHHHHHhcCCCCCCCCC---CCCccccCCCCcCccccCC
Q 044126 132 -HPDWSPSA----IKSAIMTTAWPMNSSKN---TQAEFAYGSGHINPVKAIN 175 (333)
Q Consensus 132 -~p~~sp~~----ik~~L~~tA~~~~~~~~---~~~~~~~G~G~id~~~A~~ 175 (333)
+|.|++.+ ||.+|++||.+...... ...+..+|+|+||+.||++
T Consensus 295 ~~p~l~~~~~~~~ik~~l~~ta~~~~~~~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 295 KYPKLSGEELVDLVKNLLMNTATPPLDSEDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred hCCCCCHHHHHHHHHHHHHhcCCcccccCCCCccCCccccCcchhcHHHhhC
Confidence 78999877 78889999985332221 4567788999999999975
No 6
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=99.75 E-value=1.9e-18 Score=161.39 Aligned_cols=90 Identities=30% Similarity=0.331 Sum_probs=77.3
Q ss_pred eeecCCCCeeecccCCCCCCC----CCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHH
Q 044126 50 VIKDSDAPIVASFSSRGPNKY----VPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVA 125 (333)
Q Consensus 50 ~~~~~~~~~va~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 125 (333)
+...+..+.++.|||+|+..+ ..+++||||.|||.+|+++... +.|..++|||||||||||++
T Consensus 157 Vga~~~~~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~-------------~~~~~~sGTS~AaP~VaG~a 223 (255)
T cd07479 157 VGGIDFDDNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK-------------GGCRALSGTSVASPVVAGAV 223 (255)
T ss_pred EeeeccCCccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC-------------CCeEEeccHHHHHHHHHHHH
Confidence 334567889999999997532 2577899999999999987553 36889999999999999999
Q ss_pred HHHHhhCC----CCCHHHHHHHHHhcCCCCC
Q 044126 126 AYVKSFHP----DWSPSAIKSAIMTTAWPMN 152 (333)
Q Consensus 126 ALl~~~~p----~~sp~~ik~~L~~tA~~~~ 152 (333)
|||++++| .++|.+||++|+++|+++.
T Consensus 224 All~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 224 ALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred HHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 99999998 7999999999999999874
No 7
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.74 E-value=4.4e-18 Score=162.86 Aligned_cols=106 Identities=37% Similarity=0.522 Sum_probs=92.1
Q ss_pred ecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhhC-CCCCHH
Q 044126 60 ASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFH-PDWSPS 138 (333)
Q Consensus 60 a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-p~~sp~ 138 (333)
+.||+|||+. +...||||+|||.+|+++++... +.|..++|||||||+|||++||+++++ |.+++.
T Consensus 189 ~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~~-----------~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~ 255 (312)
T cd07489 189 SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLAG-----------GGYAVLSGTSMATPYVAGAAALLIQARHGKLSPA 255 (312)
T ss_pred CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCCC-----------CceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 7899999986 68899999999999999877531 358999999999999999999999999 999999
Q ss_pred HHHHHHHhcCCCCCCCCC------CCCccccCCCCcCccccCCCCc
Q 044126 139 AIKSAIMTTAWPMNSSKN------TQAEFAYGSGHINPVKAINPGL 178 (333)
Q Consensus 139 ~ik~~L~~tA~~~~~~~~------~~~~~~~G~G~id~~~A~~~~l 178 (333)
+|+++|+++|.++...+. ..+...+|+|+||+.+|++..-
T Consensus 256 ~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~vn~~~a~~~~~ 301 (312)
T cd07489 256 ELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAYKALYATT 301 (312)
T ss_pred HHHHHHHHhCccccccCCCccccCCCCHhhcCcceeeHHHHhcCCc
Confidence 999999999988754332 1456889999999999998543
No 8
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.73 E-value=7.3e-18 Score=156.03 Aligned_cols=90 Identities=24% Similarity=0.380 Sum_probs=79.9
Q ss_pred ecCCCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhh
Q 044126 52 KDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSF 131 (333)
Q Consensus 52 ~~~~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 131 (333)
..+..+.++.||++|+.+ ||.|||++|+++.+. +.|..++|||||||||||++|||+++
T Consensus 150 a~~~~~~~~~~s~~g~~~--------di~ApG~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~ 208 (239)
T cd05561 150 AVDARGRLYREANRGAHV--------DFAAPGVDVWVAAPG-------------GGYRYVSGTSFAAPFVTAALALLLQA 208 (239)
T ss_pred eecCCCCccccCCCCCcc--------eEEccccceecccCC-------------CCEEEeCCHHHHHHHHHHHHHHHHhc
Confidence 356778899999999976 999999999987654 46899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCCCCCCccccCCC
Q 044126 132 HPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSG 166 (333)
Q Consensus 132 ~p~~sp~~ik~~L~~tA~~~~~~~~~~~~~~~G~G 166 (333)
+| +++.|||++|++||+.+... ..+..||||
T Consensus 209 ~p-~~~~~i~~~L~~ta~~~g~~---~~d~~~G~G 239 (239)
T cd05561 209 SP-LAPDDARARLAATAKDLGPP---GRDPVFGYG 239 (239)
T ss_pred CC-CCHHHHHHHHHHHhhccCCC---CcCCCcCCC
Confidence 99 99999999999999887653 467889998
No 9
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=99.72 E-value=1e-17 Score=165.88 Aligned_cols=83 Identities=30% Similarity=0.355 Sum_probs=71.5
Q ss_pred CCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHh----h
Q 044126 56 APIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKS----F 131 (333)
Q Consensus 56 ~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~ 131 (333)
.+.++.||||||+. ++.+||||+|||+.|.+.-... ...|..++|||||||||||++|||++ +
T Consensus 326 ~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~-----------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~ 392 (412)
T cd04857 326 PGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT-----------LQGSQLMNGTSMSSPNACGGIALLLSGLKAE 392 (412)
T ss_pred CCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC-----------CCCeEEecccHHHHHHHHHHHHHHHhhhhhc
Confidence 46689999999997 8999999999999998752111 14689999999999999999999975 4
Q ss_pred CCCCCHHHHHHHHHhcCCCC
Q 044126 132 HPDWSPSAIKSAIMTTAWPM 151 (333)
Q Consensus 132 ~p~~sp~~ik~~L~~tA~~~ 151 (333)
+|+|+|.+||++|++||+++
T Consensus 393 ~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 393 GIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred CCCCCHHHHHHHHHHhCccC
Confidence 78999999999999999864
No 10
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.72 E-value=3.5e-18 Score=159.68 Aligned_cols=113 Identities=37% Similarity=0.474 Sum_probs=93.6
Q ss_pred ecCCCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhh
Q 044126 52 KDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSF 131 (333)
Q Consensus 52 ~~~~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 131 (333)
+....+.++.||++|+.. .++.+||||+|||.+|.+.++... ...|...+|||||||+|||++|||+++
T Consensus 170 ~~~~~~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~----------~~~~~~~~GTS~Aap~vag~~All~~~ 238 (282)
T PF00082_consen 170 AVDNNGQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSD----------RGSYTSFSGTSFAAPVVAGAAALLLSK 238 (282)
T ss_dssp EEETTSSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTE----------SEEEEEEESHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccc-cccccccccccccccccccccccc----------cccccccCcCCchHHHHHHHHHHHHHH
Confidence 345566889999998654 478999999999999988876531 146889999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCCCCCCccccCCCCcCccccCC
Q 044126 132 HPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHINPVKAIN 175 (333)
Q Consensus 132 ~p~~sp~~ik~~L~~tA~~~~~~~~~~~~~~~G~G~id~~~A~~ 175 (333)
+|+|++.+||++|+++|..+...........+|+|+||+.+|++
T Consensus 239 ~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 239 YPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp STTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred CCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 99999999999999999988721123467788999999999874
No 11
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.71 E-value=7.4e-18 Score=172.92 Aligned_cols=88 Identities=25% Similarity=0.375 Sum_probs=75.4
Q ss_pred CCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCC
Q 044126 76 KPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSK 155 (333)
Q Consensus 76 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~tA~~~~~~~ 155 (333)
++||+|||++|+++++. +.|..++|||||||||||++|||++++|++++.||+++|++||.++...
T Consensus 531 ~VDIaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~- 596 (639)
T PTZ00262 531 YCQLAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL- 596 (639)
T ss_pred cceEEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC-
Confidence 35999999999999875 4699999999999999999999999999999999999999999887543
Q ss_pred CCCCccccCCCCcCccccCCCCccc
Q 044126 156 NTQAEFAYGSGHINPVKAINPGLVY 180 (333)
Q Consensus 156 ~~~~~~~~G~G~id~~~A~~~~lv~ 180 (333)
.+...+.|+||+.+|++.++-+
T Consensus 597 ---~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 ---KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred ---CCccccCcEEcHHHHHHHHHhc
Confidence 2222334899999999877654
No 12
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.71 E-value=2.3e-17 Score=153.89 Aligned_cols=84 Identities=36% Similarity=0.483 Sum_probs=75.1
Q ss_pred eecCCCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHh
Q 044126 51 IKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKS 130 (333)
Q Consensus 51 ~~~~~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~ 130 (333)
...+..+.++.||++||.. ++.+||||+|||.+|.+.... +.|..++|||||||||||++|||++
T Consensus 178 ga~~~~~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~ 242 (261)
T cd07493 178 GAVDANGNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD-------------GNITYANGTSFSCPLIAGLIACLWQ 242 (261)
T ss_pred EEeccCCCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC-------------CcEEeeCcHHHHHHHHHHHHHHHHH
Confidence 3456777899999999986 789999999999999875433 4689999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHhcCC
Q 044126 131 FHPDWSPSAIKSAIMTTAW 149 (333)
Q Consensus 131 ~~p~~sp~~ik~~L~~tA~ 149 (333)
++|+|++.|||++|++||+
T Consensus 243 ~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 243 AHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred HCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999984
No 13
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.71 E-value=2.1e-17 Score=156.73 Aligned_cols=87 Identities=30% Similarity=0.376 Sum_probs=69.7
Q ss_pred cccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCC-----cCcccccceeeEEeCCccchHHHHHHHHHHHHhhCCCC
Q 044126 61 SFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVS-----RDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDW 135 (333)
Q Consensus 61 ~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~ 135 (333)
.||+|||.. ++.+||||+|||++|.+......... ..........|..++|||||||||||++|||++++|++
T Consensus 200 ~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~ 277 (291)
T cd04847 200 ATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPEL 277 (291)
T ss_pred CccccCCCC--CCCcCCcEEeeCCceeecCCCCCccCcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCC
Confidence 389999986 89999999999999987644211000 00011223679999999999999999999999999999
Q ss_pred CHHHHHHHHHhcCC
Q 044126 136 SPSAIKSAIMTTAW 149 (333)
Q Consensus 136 sp~~ik~~L~~tA~ 149 (333)
++++||++|+++|+
T Consensus 278 t~~~ikalL~~sA~ 291 (291)
T cd04847 278 SPETIRALLIHSAE 291 (291)
T ss_pred CHHHHHHHHHhhcC
Confidence 99999999999984
No 14
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.70 E-value=1.4e-17 Score=155.75 Aligned_cols=85 Identities=46% Similarity=0.573 Sum_probs=77.4
Q ss_pred eeecCCCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHH
Q 044126 50 VIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVK 129 (333)
Q Consensus 50 ~~~~~~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 129 (333)
+...+..+.++.||++||.. .+.+||||+|||.+|.++++. +.|..++|||||||+|||++|||+
T Consensus 178 Vga~~~~~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~-------------~~~~~~~GTS~AaP~vaG~aAll~ 242 (264)
T cd07481 178 VGATDRNDVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG-------------GGYGSSSGTSMAAPHVAGVAALLW 242 (264)
T ss_pred EEecCCCCCCccccCCCCCC--CCCcCceEEECCCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHH
Confidence 33467788999999999986 688999999999999998875 368899999999999999999999
Q ss_pred hhCCC--CCHHHHHHHHHhcCC
Q 044126 130 SFHPD--WSPSAIKSAIMTTAW 149 (333)
Q Consensus 130 ~~~p~--~sp~~ik~~L~~tA~ 149 (333)
|++|+ ++++|||++|++||+
T Consensus 243 ~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 243 SANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred HhCCCCCCCHHHHHHHHHHhcC
Confidence 99999 999999999999984
No 15
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.65 E-value=4.6e-16 Score=144.32 Aligned_cols=85 Identities=38% Similarity=0.535 Sum_probs=72.9
Q ss_pred eecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhhCCCCCHH
Q 044126 59 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSPS 138 (333)
Q Consensus 59 va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~ 138 (333)
++.||++||+. ++++||||+|||++|++........ .......|..++|||||||+|||++|||++++|.+++.
T Consensus 180 ~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~ 253 (264)
T cd07487 180 ISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGGNP----GAGVGSGYFEMSGTSMATPHVSGAIALLLQANPILTPD 253 (264)
T ss_pred ccccccCCCCC--CCCcCCCEEccccceEecccccccc----CCCCCCceEeccccchHHHHHHHHHHHHHHHCcCCCHH
Confidence 89999999986 7899999999999999986543110 11223578999999999999999999999999999999
Q ss_pred HHHHHHHhcCC
Q 044126 139 AIKSAIMTTAW 149 (333)
Q Consensus 139 ~ik~~L~~tA~ 149 (333)
+||++|++||+
T Consensus 254 ~ik~~L~~tA~ 264 (264)
T cd07487 254 EVKCILRDTAT 264 (264)
T ss_pred HHHHHHHhhcC
Confidence 99999999984
No 16
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=99.63 E-value=6.9e-16 Score=145.27 Aligned_cols=87 Identities=34% Similarity=0.359 Sum_probs=75.8
Q ss_pred eeecCCCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHH
Q 044126 50 VIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVK 129 (333)
Q Consensus 50 ~~~~~~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 129 (333)
|...+..+.++.||++|+.. -||||+|||++|+++++. +.|..++|||||||||||++|||+
T Consensus 165 Vga~~~~~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~-------------~~~~~~sGTS~AaP~vaG~aALl~ 226 (267)
T cd07476 165 VGAMDDDGLPLKFSNWGADY-----RKKGILAPGENILGAALG-------------GEVVRRSGTSFAAAIVAGIAALLL 226 (267)
T ss_pred EEeecCCCCeeeecCCCCCC-----CCceEEecCCCceeecCC-------------CCeEEeccHHHHHHHHHHHHHHHH
Confidence 33456677889999999864 378999999999998765 468999999999999999999999
Q ss_pred hhCCC----CCHHHHHHHHHhcCCCCCCC
Q 044126 130 SFHPD----WSPSAIKSAIMTTAWPMNSS 154 (333)
Q Consensus 130 ~~~p~----~sp~~ik~~L~~tA~~~~~~ 154 (333)
+++|. +++++||++|++||.++...
T Consensus 227 s~~~~~~~~~~~~~vk~~L~~tA~~~~~~ 255 (267)
T cd07476 227 SLQLRRGAPPDPLAVRRALLETATPCDPE 255 (267)
T ss_pred HhhhhhCCCCCHHHHHHHHHHhCccCCCc
Confidence 99887 99999999999999998653
No 17
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.61 E-value=8.2e-16 Score=146.25 Aligned_cols=72 Identities=36% Similarity=0.557 Sum_probs=65.7
Q ss_pred eeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhhCCCCCH
Q 044126 58 IVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSP 137 (333)
Q Consensus 58 ~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp 137 (333)
.++.||++|+. ++||+|||++|+++.+. +.|..++|||||||||||++|||+|++|.+++
T Consensus 220 ~~~~~Sn~G~~-------~vdi~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~ 279 (291)
T cd07483 220 LVANFSNYGKK-------NVDVFAPGERIYSTTPD-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTA 279 (291)
T ss_pred cccccCCCCCC-------ceEEEeCCCCeEeccCc-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 58999999974 35999999999998765 46899999999999999999999999999999
Q ss_pred HHHHHHHHhcCC
Q 044126 138 SAIKSAIMTTAW 149 (333)
Q Consensus 138 ~~ik~~L~~tA~ 149 (333)
.|||++|++||.
T Consensus 280 ~~v~~~L~~ta~ 291 (291)
T cd07483 280 KEVKQIILESGV 291 (291)
T ss_pred HHHHHHHHHhCC
Confidence 999999999984
No 18
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.59 E-value=3.3e-15 Score=141.44 Aligned_cols=81 Identities=23% Similarity=0.208 Sum_probs=65.1
Q ss_pred eeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHh----h-C
Q 044126 58 IVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKS----F-H 132 (333)
Q Consensus 58 ~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~----~-~ 132 (333)
..+.||++|+.+ ||.|||++|+++........ .+...+.|..++|||||||||||++|||++ + +
T Consensus 192 ~~~~fSn~G~~v--------di~APG~~i~s~~~~~~~~~---~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~ 260 (277)
T cd04843 192 TRLAFSNYGSRV--------DVYGWGENVTTTGYGDLQDL---GGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGG 260 (277)
T ss_pred ccccccCCCCcc--------ceEcCCCCeEecCCCCcccc---cCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCC
Confidence 389999999987 99999999999987542110 011123457899999999999999999975 3 4
Q ss_pred CCCCHHHHHHHHHhcCC
Q 044126 133 PDWSPSAIKSAIMTTAW 149 (333)
Q Consensus 133 p~~sp~~ik~~L~~tA~ 149 (333)
|+|+++|||++|+.|+.
T Consensus 261 p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 261 TPLTPIEMRELLTATGT 277 (277)
T ss_pred CCCCHHHHHHHHHhcCC
Confidence 99999999999999873
No 19
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.57 E-value=5.8e-15 Score=139.25 Aligned_cols=85 Identities=44% Similarity=0.622 Sum_probs=70.5
Q ss_pred eecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhhC-----C
Q 044126 59 VASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFH-----P 133 (333)
Q Consensus 59 va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~-----p 133 (333)
++.||++||.. .+++||||+|||++|++...... .........|..++|||||||||||++|||+|++ |
T Consensus 201 ~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~~----~~~~~~~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~ 274 (293)
T cd04842 201 VASFSSRGPTY--DGRIKPDLVAPGTGILSARSGGG----GIGDTSDSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYP 274 (293)
T ss_pred cccccCcCCCC--CCCcCCCEECCCCCeEeccCCCC----CCCCCChhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcC
Confidence 89999999986 78999999999999998875420 0011223578999999999999999999999985 4
Q ss_pred ---CCCHHHHHHHHHhcCC
Q 044126 134 ---DWSPSAIKSAIMTTAW 149 (333)
Q Consensus 134 ---~~sp~~ik~~L~~tA~ 149 (333)
.+++.++|++|+++|+
T Consensus 275 ~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 275 TKFNPSAALLKALLINSAR 293 (293)
T ss_pred CCcCcCHHHHHHHHHhcCC
Confidence 6677899999999985
No 20
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.57 E-value=5.5e-15 Score=137.26 Aligned_cols=80 Identities=43% Similarity=0.601 Sum_probs=71.6
Q ss_pred ecCCCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhh
Q 044126 52 KDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSF 131 (333)
Q Consensus 52 ~~~~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 131 (333)
..+..+..+.||++|+.+ ||+|||.+|.++.... ...|..++|||||||+|||++|||+++
T Consensus 176 a~~~~~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~All~~~ 236 (255)
T cd04077 176 ATDSDDARASFSNYGSCV--------DIFAPGVDILSAWIGS-----------DTATATLSGTSMAAPHVAGLAAYLLSL 236 (255)
T ss_pred ccCCCCCccCcccCCCCC--------cEEeCCCCeEecccCC-----------CCcEEeeCcHHHHHHHHHHHHHHHHhh
Confidence 356778899999999987 9999999999887642 147899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCC
Q 044126 132 HPDWSPSAIKSAIMTTAWP 150 (333)
Q Consensus 132 ~p~~sp~~ik~~L~~tA~~ 150 (333)
+|.++++|||++|++||++
T Consensus 237 ~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 237 GPDLSPAEVKARLLNLATK 255 (255)
T ss_pred CCCCCHHHHHHHHHhhccC
Confidence 9999999999999999964
No 21
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.55 E-value=1e-14 Score=134.95 Aligned_cols=87 Identities=43% Similarity=0.591 Sum_probs=72.1
Q ss_pred cCCCCeeecccCCC----------CCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHH
Q 044126 53 DSDAPIVASFSSRG----------PNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAA 122 (333)
Q Consensus 53 ~~~~~~va~fSs~G----------p~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VA 122 (333)
.+..+.++.||++| +.. .....|||+.|||.+|++++... ...+.|..++|||||||+||
T Consensus 158 ~~~~~~~~~~s~~g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~AaP~va 227 (254)
T cd07490 158 VDRDDEDAWFSSFGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSMAAPHVA 227 (254)
T ss_pred ccccCCccCccCCcccccccccCCCCC-ccCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHHHHHHHH
Confidence 56677888999877 221 25568999999999999865221 11257899999999999999
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044126 123 GVAAYVKSFHPDWSPSAIKSAIMTTAW 149 (333)
Q Consensus 123 G~aALl~~~~p~~sp~~ik~~L~~tA~ 149 (333)
|++|||++++|++++.|||++|++||+
T Consensus 228 G~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 228 GVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999984
No 22
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.53 E-value=1.4e-14 Score=133.25 Aligned_cols=84 Identities=33% Similarity=0.449 Sum_probs=69.4
Q ss_pred ecCCCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhh
Q 044126 52 KDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSF 131 (333)
Q Consensus 52 ~~~~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 131 (333)
..+..+.++.||++|+.+ |++|||.++.......... .+...+.|..++|||||||+|||++|||+++
T Consensus 159 a~~~~~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~~----~~~~~~~~~~~~GTS~Aap~vaG~~All~~~ 226 (242)
T cd07498 159 ATDSNDARASYSNYGNYV--------DLVAPGVGIWTTGTGRGSA----GDYPGGGYGSFSGTSFASPVAAGVAALILSA 226 (242)
T ss_pred EeCCCCCccCcCCCCCCe--------EEEeCcCCcccCCcccccc----ccCCCCceEeeCcHHHHHHHHHHHHHHHHHh
Confidence 356778899999999987 9999999998875432110 1112357889999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhc
Q 044126 132 HPDWSPSAIKSAIMTT 147 (333)
Q Consensus 132 ~p~~sp~~ik~~L~~t 147 (333)
+|+|++.|||++|++|
T Consensus 227 ~p~l~~~~i~~~L~~t 242 (242)
T cd07498 227 NPNLTPAEVEDILTST 242 (242)
T ss_pred CCCCCHHHHHHHHHhC
Confidence 9999999999999875
No 23
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=2.3e-14 Score=149.11 Aligned_cols=102 Identities=30% Similarity=0.392 Sum_probs=86.1
Q ss_pred CeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhh----C
Q 044126 57 PIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSF----H 132 (333)
Q Consensus 57 ~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~----~ 132 (333)
...-.||||||+. |+-+--.|.|||+-|-+. +.. .-..-.+|.|||||+|+++|.+|||++. +
T Consensus 452 ~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~----------tlq~~qLMNGTSMsSP~acG~IAllLSgLKa~n 518 (1304)
T KOG1114|consen 452 SNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQY----------TLQNSQLMNGTSMSSPSACGAIALLLSGLKAQN 518 (1304)
T ss_pred CCccccccCCCCc--CCCcceEEecCCccccCC-chh----------hhhhhhhhCCcccCCccccchHHHHHHHHHhcC
Confidence 3466799999997 888888999999999654 221 1134578999999999999999999664 6
Q ss_pred CCCCHHHHHHHHHhcCCCCCCCCCCCCccccCCCCcCccccCC
Q 044126 133 PDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHINPVKAIN 175 (333)
Q Consensus 133 p~~sp~~ik~~L~~tA~~~~~~~~~~~~~~~G~G~id~~~A~~ 175 (333)
-.|||..||.+|++||.++.+. ..|.+|.|++++.+|.+
T Consensus 519 i~ytpysVrrAlenTa~~l~~i----d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 519 IPYTPYSVRRALENTATKLGDI----DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred CCCcHHHHHHHHHhcccccCcc----chhccCcceeehhHHHH
Confidence 7899999999999999999886 68999999999999976
No 24
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.53 E-value=1.4e-14 Score=138.43 Aligned_cols=72 Identities=67% Similarity=1.021 Sum_probs=61.1
Q ss_pred cCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044126 75 LKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 149 (333)
Q Consensus 75 lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~tA~ 149 (333)
+||||+|||++|++++..... .........|..++|||||||+|||++|||+|++|+|++.|||++|++||.
T Consensus 236 ~~~di~apG~~i~~~~~~~~~---~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 236 LKPDIAAPGVDILAAWTPEGA---DPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred CccceeeccCceeecccCccc---cccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 799999999999999875311 111223367999999999999999999999999999999999999999984
No 25
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.52 E-value=1.3e-14 Score=134.99 Aligned_cols=78 Identities=42% Similarity=0.509 Sum_probs=70.8
Q ss_pred ecCCCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhh
Q 044126 52 KDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSF 131 (333)
Q Consensus 52 ~~~~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 131 (333)
+.+..+..+.||++|+.+ |++|||.+|.+.... +.|..++|||||||+|||++||++++
T Consensus 182 a~~~~~~~~~~s~~g~~~--------~~~apG~~i~~~~~~-------------~~~~~~~GTS~Aap~vag~~Al~~~~ 240 (260)
T cd07484 182 ATDQDDKRASFSNYGKWV--------DVSAPGGGILSTTPD-------------GDYAYMSGTSMATPHVAGVAALLYSQ 240 (260)
T ss_pred eeCCCCCcCCcCCCCCCc--------eEEeCCCCcEeecCC-------------CCEEEeeeHHHHHHHHHHHHHHHHhc
Confidence 456678899999999876 999999999988655 46899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCCCC
Q 044126 132 HPDWSPSAIKSAIMTTAWPM 151 (333)
Q Consensus 132 ~p~~sp~~ik~~L~~tA~~~ 151 (333)
+| +++.+||++|+++|+++
T Consensus 241 ~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 241 GP-LSASEVRDALKKTADDI 259 (260)
T ss_pred CC-CCHHHHHHHHHHhCccC
Confidence 99 99999999999999875
No 26
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.51 E-value=2.8e-14 Score=134.14 Aligned_cols=83 Identities=41% Similarity=0.559 Sum_probs=70.3
Q ss_pred eeecCCCCeeecccCCCCCCCCCCCcCCcEEeCCC-ceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHH
Q 044126 50 VIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGV-NILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYV 128 (333)
Q Consensus 50 ~~~~~~~~~va~fSs~Gp~~~~~~~lKPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 128 (333)
+...+..+.++.||++|+.+ ||+|||. .|+++++.... .....|..++|||||||+|||++|||
T Consensus 189 V~a~~~~~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~-------~~~~~~~~~sGTS~AaP~VaG~aAll 253 (273)
T cd07485 189 VAALDTNDNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG-------DGGGNYEYLSGTSMAAPHVSGVAALV 253 (273)
T ss_pred EEeccCCCCcCccccCCCce--------EEEeCCCCccccccccccC-------CCCCCeEeeccHHHHHHHHHHHHHHH
Confidence 33456778899999999986 9999999 89888764311 11256899999999999999999999
Q ss_pred HhhCCC-CCHHHHHHHHHhc
Q 044126 129 KSFHPD-WSPSAIKSAIMTT 147 (333)
Q Consensus 129 ~~~~p~-~sp~~ik~~L~~t 147 (333)
++++|+ ++++|||++|++|
T Consensus 254 ~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 254 LSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred HHhCCCCCCHHHHHHHHHhC
Confidence 999999 9999999999876
No 27
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.51 E-value=3.3e-14 Score=134.40 Aligned_cols=90 Identities=34% Similarity=0.451 Sum_probs=71.8
Q ss_pred eeecCCCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCC--cCcccccceeeEEeCCccchHHHHHHHHHH
Q 044126 50 VIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVS--RDIEDERHVKYNIISGTSMACPHAAGVAAY 127 (333)
Q Consensus 50 ~~~~~~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~--~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 127 (333)
|...+..+.++.||++|+.+ ||+|||.+|.+......... ..........|..++|||||||+|||++||
T Consensus 194 Vga~~~~~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aAl 265 (285)
T cd07496 194 VGATDLRGQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAAL 265 (285)
T ss_pred EeccCCCCCcccccCCCCCC--------CEEeCCCCccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHHHHH
Confidence 33467788999999999987 99999999998866432110 001112235789999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHhc
Q 044126 128 VKSFHPDWSPSAIKSAIMTT 147 (333)
Q Consensus 128 l~~~~p~~sp~~ik~~L~~t 147 (333)
+++++|+|++++||++|++|
T Consensus 266 v~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 266 MKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred HHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999875
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.51 E-value=3.5e-14 Score=131.76 Aligned_cols=78 Identities=41% Similarity=0.611 Sum_probs=69.7
Q ss_pred ecCCCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhh
Q 044126 52 KDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSF 131 (333)
Q Consensus 52 ~~~~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 131 (333)
.....+.++.||++|+. +||+.|||.++++.... +.|..++|||||||+|||++||++|+
T Consensus 182 a~~~~~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~-------------~~~~~~~GTS~AaP~vaG~~All~~~ 241 (259)
T cd07473 182 ATDSNDALASFSNYGKK-------TVDLAAPGVDILSTSPG-------------GGYGYMSGTSMATPHVAGAAALLLSL 241 (259)
T ss_pred ecCCCCCcCcccCCCCC-------CcEEEeccCCeEeccCC-------------CcEEEeccHhHHHHHHHHHHHHHHHh
Confidence 35677889999999986 45999999999986544 47899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhcCC
Q 044126 132 HPDWSPSAIKSAIMTTAW 149 (333)
Q Consensus 132 ~p~~sp~~ik~~L~~tA~ 149 (333)
+|.+++.+||++|++||+
T Consensus 242 ~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 242 NPNLTAAQIKDAILSSAD 259 (259)
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999999984
No 29
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.51 E-value=7.6e-14 Score=133.43 Aligned_cols=79 Identities=27% Similarity=0.427 Sum_probs=63.1
Q ss_pred CCCCcCCcEE----------------eCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhhCCC
Q 044126 71 VPDILKPDIS----------------APGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPD 134 (333)
Q Consensus 71 ~~~~lKPDI~----------------APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~ 134 (333)
.+++.|||++ |||..|.+++.... . .....+.|..++|||||||||||++|||++++|.
T Consensus 194 ~~g~~~pd~~~~~g~~~~~~~~~~~~APG~~i~~~~~~~~--~---~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~ 268 (298)
T cd07494 194 YPGRQVPDVCGLVGMLPHAAYLMLPVPPGSQLDRSCAAFP--D---GTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPG 268 (298)
T ss_pred CCCCccCccccccCcCCcccccccccCCCcceeccccCCC--C---CCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCC
Confidence 4677899984 69998876553210 0 0111257999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCCCCC
Q 044126 135 WSPSAIKSAIMTTAWPMNSS 154 (333)
Q Consensus 135 ~sp~~ik~~L~~tA~~~~~~ 154 (333)
|+++|||.+|+++|+++...
T Consensus 269 ~~~~~v~~~l~~ta~~~~~~ 288 (298)
T cd07494 269 LSPERARSLLNKTARDVTKG 288 (298)
T ss_pred CCHHHHHHHHHHhCcccCCC
Confidence 99999999999999987653
No 30
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.50 E-value=4e-14 Score=134.75 Aligned_cols=105 Identities=28% Similarity=0.247 Sum_probs=76.9
Q ss_pred eeecCCCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHH
Q 044126 50 VIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVK 129 (333)
Q Consensus 50 ~~~~~~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 129 (333)
++.....+....|+++.+. ...||||+|||++|.+++.. +.|..++|||||||+|||++||++
T Consensus 190 V~~V~~~~~~~~~~~~~~~----~~~~~dv~ApG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~ 252 (297)
T cd07480 190 VAAVGALGRTGNFSAVANF----SNGEVDIAAPGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWA 252 (297)
T ss_pred EEEECCCCCCCCccccCCC----CCCceEEEeCCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHH
Confidence 3334444555556555443 23578999999999988765 479999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHhcCCCCCCCC--CCCCccccCCCCcCcc
Q 044126 130 SFHPDWSPSAIKSAIMTTAWPMNSSK--NTQAEFAYGSGHINPV 171 (333)
Q Consensus 130 ~~~p~~sp~~ik~~L~~tA~~~~~~~--~~~~~~~~G~G~id~~ 171 (333)
+++|.++..+++.+|++......... .......+|+|++++.
T Consensus 253 ~~~p~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~g~G~~~~~ 296 (297)
T cd07480 253 EALPKAGGRALAALLQARLTAARTTQFAPGLDLPDRGVGLGLAP 296 (297)
T ss_pred HhCcccCHHHHHHHHHHHHhhcccCCCCCCCChhhcCCceeecC
Confidence 99999999998888884432211110 0246778999998864
No 31
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.50 E-value=5.2e-14 Score=128.02 Aligned_cols=77 Identities=44% Similarity=0.633 Sum_probs=69.1
Q ss_pred eeecCCCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHH
Q 044126 50 VIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVK 129 (333)
Q Consensus 50 ~~~~~~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 129 (333)
|...+..+.+..||++|+.+ |+.|||.+|++++.. +.|..++|||||||+|||++|||+
T Consensus 153 Vga~~~~~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-------------~~~~~~~GTS~Aap~vag~~All~ 211 (229)
T cd07477 153 VGAVDSNNNRASFSSTGPEV--------ELAAPGVDILSTYPN-------------NDYAYLSGTSMATPHVAGVAALVW 211 (229)
T ss_pred EEeecCCCCcCCccCCCCCc--------eEEeCCCCeEEecCC-------------CCEEEEccHHHHHHHHHHHHHHHH
Confidence 44456778899999999976 999999999998765 368899999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHhc
Q 044126 130 SFHPDWSPSAIKSAIMTT 147 (333)
Q Consensus 130 ~~~p~~sp~~ik~~L~~t 147 (333)
|++|++++.+||++|++|
T Consensus 212 ~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 212 SKRPELTNAQVRQALNKT 229 (229)
T ss_pred HhCCCCCHHHHHHHHHhC
Confidence 999999999999999875
No 32
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.50 E-value=3.4e-14 Score=134.56 Aligned_cols=80 Identities=26% Similarity=0.216 Sum_probs=67.9
Q ss_pred ecCCCCeeecccCCCCCCCCCCCcCCcEEeCCCc-------eeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHH
Q 044126 52 KDSDAPIVASFSSRGPNKYVPDILKPDISAPGVN-------ILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGV 124 (333)
Q Consensus 52 ~~~~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~-------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~ 124 (333)
.....+.++.||++|+.. ++.|||.. |.++.... ....|..++|||||||+|||+
T Consensus 211 a~~~~g~~~~~s~~g~~~--------~~~a~g~~~~~~~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~ 272 (297)
T cd04059 211 AVTANGVRASYSEVGSSV--------LASAPSGGSGNPEASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGV 272 (297)
T ss_pred eeCCCCCCcCCCCCCCcE--------EEEecCCCCCCCCCceEeCCCCC----------CCCcccccCCcchhhhhhHhH
Confidence 356778899999999987 89999988 55554331 014578899999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcCC
Q 044126 125 AAYVKSFHPDWSPSAIKSAIMTTAW 149 (333)
Q Consensus 125 aALl~~~~p~~sp~~ik~~L~~tA~ 149 (333)
+|||+|+||+|++.|||++|++||+
T Consensus 273 aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 273 IALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred HHHhhccCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999984
No 33
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.43 E-value=7.1e-14 Score=130.31 Aligned_cols=114 Identities=17% Similarity=0.091 Sum_probs=72.1
Q ss_pred cceeEeecHHHHHHHHHHHhccCCCCCceeecc-eeeeecCCCCee---ecccCCCCCCCCCCCcCCcEEeCCCceeecc
Q 044126 15 DWCIKVWCEEEEARLADAIIGSDTKNPQAEILK-TSVIKDSDAPIV---ASFSSRGPNKYVPDILKPDISAPGVNILAAY 90 (333)
Q Consensus 15 ~~~~~~~~~~~g~~l~~y~~~~s~~~~~~~i~~-~~~~~~~~~~~v---a~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~ 90 (333)
++.+++.+.++|.....+- .-...+.... .+|...+..+.. +.||++|.....++..||||+|||++|++
T Consensus 123 GvlvV~AAGN~g~~~~~~~----~i~~pa~~~nvItVGA~d~~g~~~~~s~~sn~~~~~~~~~~~~~di~APG~~i~s-- 196 (247)
T cd07488 123 EVINVFSAGNQGKEKEKFG----GISIPTLAYNSIVVGSTDRNGDRFFASDVSNAGSEINSYGRRKVLIVAPGSNYNL-- 196 (247)
T ss_pred CEEEEEecCCCCCCccCCC----CcCCccccCCeEEEEEecCCCCcceecccccccCCCCCCCCceeEEEEeeeeEEC--
Confidence 6677777777665321111 0000111111 223334444544 45676543322367889999999999998
Q ss_pred CCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhhCCCCCHH------HHHHHHHhc
Q 044126 91 SPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSPS------AIKSAIMTT 147 (333)
Q Consensus 91 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~------~ik~~L~~t 147 (333)
+. +.|..++|||||||||||++|||++++|++.+. +++.+|+.+
T Consensus 197 ~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~ 246 (247)
T cd07488 197 PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSS 246 (247)
T ss_pred CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhcc
Confidence 22 368899999999999999999999998877644 455555544
No 34
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.40 E-value=5.5e-13 Score=121.33 Aligned_cols=61 Identities=33% Similarity=0.468 Sum_probs=56.5
Q ss_pred CCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044126 76 KPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAW 149 (333)
Q Consensus 76 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~tA~ 149 (333)
++|+.|||.+|.++++. +.|..++|||||||+|||++|||++++|+|+++|||++|+.||+
T Consensus 162 ~~~~~apg~~i~~~~~~-------------~~~~~~~GTS~Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 162 YVEFSADGVDIIAPAPH-------------GRYLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred CceEEeCCCCeEeecCC-------------CCEEEeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 45999999999988765 36899999999999999999999999999999999999999984
No 35
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.39 E-value=6.2e-13 Score=125.38 Aligned_cols=89 Identities=22% Similarity=0.270 Sum_probs=67.4
Q ss_pred ecCCCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCC---CCCCc------CcccccceeeEEeCCccchHHHHH
Q 044126 52 KDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPL---APVSR------DIEDERHVKYNIISGTSMACPHAA 122 (333)
Q Consensus 52 ~~~~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~---~~~~~------~~~~~~~~~y~~~sGTSmAaP~VA 122 (333)
..+..+.++.||++|+.. +|++|||.++....... ..... .......+.|..++|||||||+||
T Consensus 196 a~~~~~~~~~~S~~g~~~-------~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Va 268 (294)
T cd07482 196 ATDNNGNLSSFSNYGNSR-------IDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEGGYAYMYGTSLAAPKVS 268 (294)
T ss_pred eeCCCCCcCccccCCCCc-------ceEECCCCCcccccccCccccccccccccceeeecccCCceEeecchhhhhHHHH
Confidence 367788899999999753 49999999985322110 00000 011123467999999999999999
Q ss_pred HHHHHHHhhCCCCCH-HHHHHHHHhc
Q 044126 123 GVAAYVKSFHPDWSP-SAIKSAIMTT 147 (333)
Q Consensus 123 G~aALl~~~~p~~sp-~~ik~~L~~t 147 (333)
|++|||++++|.+++ .|||++|++|
T Consensus 269 G~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 269 GALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred HHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 999999999999999 9999999976
No 36
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.38 E-value=6.3e-13 Score=122.71 Aligned_cols=84 Identities=30% Similarity=0.372 Sum_probs=69.5
Q ss_pred eeecCCCCeeecc--cCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHH
Q 044126 50 VIKDSDAPIVASF--SSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAY 127 (333)
Q Consensus 50 ~~~~~~~~~va~f--Ss~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aAL 127 (333)
|...+..+....| |++|... -..+++|||.+|.++.... ...|..++|||||||+|||++||
T Consensus 182 Vga~~~~~~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~~~~-----------~~~~~~~~GTS~Aap~vaG~~Al 245 (267)
T cd04848 182 VVAVDPNGTIASYSYSNRCGVA-----ANWCLAAPGENIYSTDPDG-----------GNGYGRVSGTSFAAPHVSGAAAL 245 (267)
T ss_pred EEEecCCCCcccccccccchhh-----hhheeecCcCceeecccCC-----------CCcccccceeEchHHHHHHHHHH
Confidence 3345666777777 9998754 1347999999999887631 14688999999999999999999
Q ss_pred HHhhCCCCCHHHHHHHHHhcCC
Q 044126 128 VKSFHPDWSPSAIKSAIMTTAW 149 (333)
Q Consensus 128 l~~~~p~~sp~~ik~~L~~tA~ 149 (333)
+++++|.++++|||++|++||+
T Consensus 246 ~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 246 LAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred HHHHCCCCCHHHHHHHHHhhcC
Confidence 9999999999999999999985
No 37
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.8e-12 Score=130.40 Aligned_cols=110 Identities=26% Similarity=0.347 Sum_probs=93.5
Q ss_pred eeecCCCCeeecccCCCCCCC----CCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHH
Q 044126 50 VIKDSDAPIVASFSSRGPNKY----VPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVA 125 (333)
Q Consensus 50 ~~~~~~~~~va~fSs~Gp~~~----~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~a 125 (333)
+.+.+..+.+|.|||||-+.+ +.+++||||++.|.+|...-.. ++...+||||.|+|.|||++
T Consensus 349 VGGIdfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav 415 (1033)
T KOG4266|consen 349 VGGIDFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAV 415 (1033)
T ss_pred eccccccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccchhccCCcccchhhhcee
Confidence 445788999999999997643 5789999999999999765433 46788999999999999999
Q ss_pred HHHHh----hCCCCCHHHHHHHHHhcCCCCCCCCCCCCccccCCCCcCccccCCC
Q 044126 126 AYVKS----FHPDWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHINPVKAINP 176 (333)
Q Consensus 126 ALl~~----~~p~~sp~~ik~~L~~tA~~~~~~~~~~~~~~~G~G~id~~~A~~~ 176 (333)
+||.+ +.--++|+.+|++|+..|..+... .-+.||+|.+|+.++.+-
T Consensus 416 ~LLvS~~~qk~dl~NPASmKQaLiegA~kLpg~----NMfEQGaGkldLL~syqi 466 (1033)
T KOG4266|consen 416 CLLVSVEAQKKDLLNPASMKQALIEGAAKLPGP----NMFEQGAGKLDLLESYQI 466 (1033)
T ss_pred eeEeeeheehhhccCHHHHHHHHHhHHhhCCCC----chhhccCcchhHHHHHHH
Confidence 99977 344579999999999999998875 578999999999998763
No 38
>KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=3.4e-13 Score=131.68 Aligned_cols=82 Identities=41% Similarity=0.528 Sum_probs=68.7
Q ss_pred eeeecCCCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHH
Q 044126 49 SVIKDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYV 128 (333)
Q Consensus 49 ~~~~~~~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl 128 (333)
|+...+-.+.+|.||+||+++ ||.|||++|+|+|.+.. ..-.++||||||+|||||++|..
T Consensus 371 TVGAst~~D~iA~FSN~G~CV--------diFAPGv~IlSs~iGs~-----------~at~ilSGTSMasPhvaG~aAy~ 431 (501)
T KOG1153|consen 371 TVGASTKNDTIAFFSNWGKCV--------DIFAPGVNILSSWIGSN-----------NATAILSGTSMASPHVAGLAAYF 431 (501)
T ss_pred EecccccccchhhhcCcccee--------eeecCchhhhhhhhcCc-----------cchheeecccccCcchhhhHHHh
Confidence 333356789999999999999 99999999999998752 34578999999999999999999
Q ss_pred HhhCCC---------CCHHHHHHHHHhcCC
Q 044126 129 KSFHPD---------WSPSAIKSAIMTTAW 149 (333)
Q Consensus 129 ~~~~p~---------~sp~~ik~~L~~tA~ 149 (333)
++.+|. .++.++|..+..-..
T Consensus 432 ls~~~~~~~~f~n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 432 LSLGPLPDSSFANDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hhcCCCChHHhhhccCChHHhhhhhhcccc
Confidence 999883 378888887766553
No 39
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.14 E-value=4.7e-11 Score=111.31 Aligned_cols=62 Identities=23% Similarity=0.198 Sum_probs=52.8
Q ss_pred ecCCCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhh
Q 044126 52 KDSDAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSF 131 (333)
Q Consensus 52 ~~~~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 131 (333)
..+..+.++.||++|+.+ |++|||++|+++++.. ..+.|..++|||||||||||++||+++.
T Consensus 168 A~~~~g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~----------~~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 168 AADEDGGADAPVGDEDRV--------DYILPGENVEARDRPP----------LSNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred eeCCCCCCccccCCCCcc--------eEEeCCCceecCCcCC----------CCCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 356678899999999987 9999999999887521 0157999999999999999999999985
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.10 E-value=2e-10 Score=103.05 Aligned_cols=76 Identities=39% Similarity=0.531 Sum_probs=60.4
Q ss_pred cCCCCeee-cccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhh
Q 044126 53 DSDAPIVA-SFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSF 131 (333)
Q Consensus 53 ~~~~~~va-~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~ 131 (333)
.+..+... .++++|+ |||+.|||.++..... .....+..++|||||||+|||++||++++
T Consensus 165 ~~~~~~~~~~~~~~~~--------~~~~~apg~~~~~~~~-----------~~~~~~~~~~GTS~Aap~vaG~~Al~~~~ 225 (241)
T cd00306 165 VDRDGTPASPSSNGGA--------GVDIAAPGGDILSSPT-----------TGGGGYATLSGTSMAAPIVAGVAALLLSA 225 (241)
T ss_pred cCcCCCccCCcCCCCC--------CceEEeCcCCccCccc-----------CCCCCeEeeccHHHHHHHHHHHHHHHHHH
Confidence 34444444 5665555 5599999999987511 11257899999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhc
Q 044126 132 HPDWSPSAIKSAIMTT 147 (333)
Q Consensus 132 ~p~~sp~~ik~~L~~t 147 (333)
+|++++.++|++|+++
T Consensus 226 ~~~~~~~~~~~~l~~t 241 (241)
T cd00306 226 NPDLTPAQVKAALLST 241 (241)
T ss_pred CCCCCHHHHHHHHhhC
Confidence 9999999999999875
No 41
>PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B.
Probab=98.88 E-value=2e-08 Score=82.47 Aligned_cols=81 Identities=19% Similarity=0.285 Sum_probs=58.3
Q ss_pred eeEEEEEEEEeccCCCeeEEEEEec--------CCc----------e-EEEEEcCeEEEeeCCcEEEEEEEEEeecC---
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAGILQ--------NSK----------I-SVNVVPEVLSFRSLNEKKSFIVTVTGKGL--- 295 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~v~~--------~~g----------~-~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~--- 295 (333)
...+++.+|+|.|+.+.+|++++.. ..| . .++..|.+|++ ++|++++++|+|+.+..
T Consensus 8 ~~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~ 86 (112)
T PF06280_consen 8 NKFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDA 86 (112)
T ss_dssp SEEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHH
T ss_pred CceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCc
Confidence 3589999999999999999999882 011 1 56777889999 99999999999999652
Q ss_pred CCCCeEEEEEEEEc-CCc-eEEeeEE
Q 044126 296 ASGSIVSAALVWFD-GSR-IVRSPIV 319 (333)
Q Consensus 296 ~~~~~~~G~i~~~~-~~~-~vr~P~~ 319 (333)
....+++|+|.+++ +++ .+++||+
T Consensus 87 ~~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 87 SNGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp TT-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred ccCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 34689999999985 554 8999996
No 42
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=4.7e-07 Score=89.53 Aligned_cols=101 Identities=40% Similarity=0.517 Sum_probs=76.9
Q ss_pred CCCeeecccCCCCCCCCCCCcCCcEEeCCCceee-----ccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHH
Q 044126 55 DAPIVASFSSRGPNKYVPDILKPDISAPGVNILA-----AYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVK 129 (333)
Q Consensus 55 ~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~s-----a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 129 (333)
..+.++.||++|... +.|++|||.+|.+ .+++.. ..|..++||||++|||+|.+||++
T Consensus 314 ~~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~~~~~~-----------~~~~~~~Gts~a~p~v~g~aal~~ 376 (508)
T COG1404 314 LSDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNTLPGDG-----------ADYVTLSGTSMAAPHVSGVAALVL 376 (508)
T ss_pred CCCccccccccCCCC------CcceeCCCccccccccceeeeCCc-----------cceEeeccccccccHHHHHHHHHH
Confidence 358999999999741 1299999999987 333210 248999999999999999999999
Q ss_pred hhCC-CCCHHHHHHHHHhcCCCCCCCCCCCCccccCCCCcCccccCC
Q 044126 130 SFHP-DWSPSAIKSAIMTTAWPMNSSKNTQAEFAYGSGHINPVKAIN 175 (333)
Q Consensus 130 ~~~p-~~sp~~ik~~L~~tA~~~~~~~~~~~~~~~G~G~id~~~A~~ 175 (333)
+.+| .+++.+++..+..++.. ... ......++.|..+......
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~ 420 (508)
T COG1404 377 SANPNELTPAQVRNLIVTTAGL-TPL--SGVDNLVGGGLANLDAAAT 420 (508)
T ss_pred ccCcccCCHHHHHHHHhhcccc-ccC--CccccccccCccccccccc
Confidence 9999 89999999999888874 111 1245566777666655544
No 43
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=97.46 E-value=0.00015 Score=71.34 Aligned_cols=48 Identities=27% Similarity=0.396 Sum_probs=38.7
Q ss_pred CCCcCCcEEeC---CCceeeccCCCCCCCcCcccccceeeEEeCCccchHHHHHHHHHHHHhhCC
Q 044126 72 PDILKPDISAP---GVNILAAYSPLAPVSRDIEDERHVKYNIISGTSMACPHAAGVAAYVKSFHP 133 (333)
Q Consensus 72 ~~~lKPDI~AP---G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~~~~p 133 (333)
.+|-+|||+|. +...+.... +.+....|||+|||++||++|||.|++.
T Consensus 249 ~gR~~PDVaa~a~~~~g~~i~~~--------------g~~~~~gGTS~aaP~~Ag~~Al~n~~~~ 299 (361)
T cd04056 249 SGRGVPDVAANADPGTGYLVVVN--------------GQWYLVGGTSAAAPLFAGLIALINQARL 299 (361)
T ss_pred CCCcCCeeecccCCCCCEEEEEC--------------CeEEeeCCccHHHHHHHHHHHHHHHHhh
Confidence 57889999998 455443322 4688899999999999999999999863
No 44
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=97.05 E-value=0.017 Score=45.90 Aligned_cols=81 Identities=15% Similarity=0.040 Sum_probs=61.4
Q ss_pred eeEEEEEEEEeccCCCeeEEEEEecCCceEEEEEcCeEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEEcCCceEEee
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAGILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFDGSRIVRSP 317 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~v~~~~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~~~~~G~i~~~~~~~~vr~P 317 (333)
...+.+.+|+|.|.....|++.......-.+++.|..=.+ ++|++.+++|+|.+.. . .+.+.+.|.+.-.+..+.+|
T Consensus 20 ~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~-~-~g~~~~~l~i~~e~~~~~i~ 96 (102)
T PF14874_consen 20 QTYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTK-P-LGDYEGSLVITTEGGSFEIP 96 (102)
T ss_pred CEEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCC-C-CceEEEEEEEEECCeEEEEE
Confidence 4567778899999999999997654334557777776566 8999999999999643 2 24578888887666688888
Q ss_pred EEEE
Q 044126 318 IVVH 321 (333)
Q Consensus 318 ~~v~ 321 (333)
+-..
T Consensus 97 v~a~ 100 (102)
T PF14874_consen 97 VKAE 100 (102)
T ss_pred EEEE
Confidence 7654
No 45
>cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase. This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin
Probab=96.65 E-value=0.0024 Score=54.58 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=39.5
Q ss_pred ccceeEeecHHHHHHHHHHHhccCCCCCceee-cceeeeecCCCCeeecccCCCCC
Q 044126 14 LDWCIKVWCEEEEARLADAIIGSDTKNPQAEI-LKTSVIKDSDAPIVASFSSRGPN 68 (333)
Q Consensus 14 ~~~~~~~~~~~~g~~l~~y~~~~s~~~~~~~i-~~~~~~~~~~~~~va~fSs~Gp~ 68 (333)
..+|+++++.++|+.|++|+ ++ .++| +..+.. ..+++.++.||||||.
T Consensus 93 ~~iP~v~Is~~dG~~L~~~l--~~----~~~i~~~~~~~-~~~~p~va~fSsrgp~ 141 (143)
T cd02133 93 VFIPVVFISKEDGEALKAAL--ES----SKKLTFNTKKE-KATNPDLADFSSRGPW 141 (143)
T ss_pred CeEeEEEecHHHHHHHHHHH--hC----CCeEEEEeccc-cccCCccccccCcCCC
Confidence 46899999999999999999 54 5667 555544 5688999999999996
No 46
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=96.15 E-value=0.033 Score=42.41 Aligned_cols=58 Identities=21% Similarity=0.135 Sum_probs=38.2
Q ss_pred eeEEEEEEEEeccCCC-eeEEEEEecCCceEEEEEcCeEEEeeCCcEEEEEEEEEeecC
Q 044126 238 FTIKFPRTVTNIGLPN-STYKAGILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGL 295 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~-~tY~~~v~~~~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~ 295 (333)
...+++.+|+|.|... ...++++..|.|-++...|..+.--++|++++++++|+++..
T Consensus 5 ~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~ 63 (78)
T PF10633_consen 5 ETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPAD 63 (78)
T ss_dssp EEEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT
T ss_pred CEEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCC
Confidence 5788999999999754 458888889999998788887754489999999999999864
No 47
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=95.09 E-value=0.25 Score=40.56 Aligned_cols=57 Identities=14% Similarity=0.086 Sum_probs=41.3
Q ss_pred eeEEEEEEEEeccCCCeeEEEEEecCCceEEEEEcCeEEEeeCCcEEEEEEEEEeecC
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAGILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGL 295 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~v~~~~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~ 295 (333)
-.-..+.+++|.+..+.+|+++++.++|+++......+.+ ++|++..+.|.+.++..
T Consensus 31 I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~ 87 (118)
T PF11614_consen 31 IRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPD 87 (118)
T ss_dssp EEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GG
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHH
Confidence 4456788999999999999999999889999664478899 89999999999999864
No 48
>KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.0035 Score=61.27 Aligned_cols=85 Identities=20% Similarity=0.250 Sum_probs=60.4
Q ss_pred eEEeCCccchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCC--CCC----------CCCCCCccccCCCCcCccccCC
Q 044126 108 YNIISGTSMACPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWP--MNS----------SKNTQAEFAYGSGHINPVKAIN 175 (333)
Q Consensus 108 y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~tA~~--~~~----------~~~~~~~~~~G~G~id~~~A~~ 175 (333)
...-||||.|||-.||+.||.++++|.++..+++-+-.-|.+. +-+ ..+...+..+|+|.+|+.+.+.
T Consensus 378 t~~hsgtsaaapeaagvfalaleanp~ltwrd~qhltvltskrnslfd~~~rf~w~mngvglefnhlfgfgvldagamv~ 457 (629)
T KOG3526|consen 378 TRSHSGTSAAAPEAAGVFALALEANPSLTWRDLQHLTVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVLDAGAMVM 457 (629)
T ss_pred ecccCCccccCccccceeeeeeccCCCcchhhhhheeeeecccchhhcccceEEEeccccceeeecccccccccHHHHHH
Confidence 4467999999999999999999999999999998776666642 111 1113456779999999887765
Q ss_pred CCccccCchhhHHHHHhcCC
Q 044126 176 PGLVYGAFKQDYINMLCSMG 195 (333)
Q Consensus 176 ~~lv~d~~~~dy~~~lc~~~ 195 (333)
.+.-+...++. |-|.-|
T Consensus 458 lak~wktvppr---yhc~ag 474 (629)
T KOG3526|consen 458 LAKAWKTVPPR---YHCTAG 474 (629)
T ss_pred HHHHhccCCCc---eeeccc
Confidence 44444443333 335544
No 49
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=94.13 E-value=1.4 Score=36.15 Aligned_cols=68 Identities=16% Similarity=0.075 Sum_probs=48.1
Q ss_pred eEEEEEEEEeccCCCeeEEEEEec---CC----ceEEEEEcCeEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEE
Q 044126 239 TIKFPRTVTNIGLPNSTYKAGILQ---NS----KISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWF 308 (333)
Q Consensus 239 ~~t~~rtvtNvg~~~~tY~~~v~~---~~----g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~~~~~G~i~~~ 308 (333)
..+.+.+|+|.++.+..+.+.+.. .. .-.+.++|..+.+ ++|++++++| +.....+.+.-..=+|.++
T Consensus 15 ~~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 15 QRSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SSEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CCEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 457789999999988888888875 11 1257789999999 8999999999 7754433333333356654
No 50
>PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function.
Probab=93.46 E-value=1.1 Score=37.33 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=52.3
Q ss_pred eeEEEEEEEEeccCCCeeEEEEEec----CCce--------------E------EEEEcCeEEEeeCCcEEEEEEEEEee
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAGILQ----NSKI--------------S------VNVVPEVLSFRSLNEKKSFIVTVTGK 293 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~v~~----~~g~--------------~------v~v~P~~l~~~~~g~~~~~~Vt~~~~ 293 (333)
...+++.+|+|.+++..+|.+.+.. ..|+ . +++ |..+++ +++++++++++++.+
T Consensus 27 q~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~sk~V~~~i~~P 104 (121)
T PF06030_consen 27 QKQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNESKTVTFTIKMP 104 (121)
T ss_pred CEEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCCEEEEEEEEEcC
Confidence 6788999999999999999998653 1121 0 222 556888 899999999999998
Q ss_pred cCCCCCeEEEEEEEE
Q 044126 294 GLASGSIVSAALVWF 308 (333)
Q Consensus 294 ~~~~~~~~~G~i~~~ 308 (333)
...-.+.+-|.|.+.
T Consensus 105 ~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 105 KKAFDGIILGGIYFS 119 (121)
T ss_pred CCCcCCEEEeeEEEE
Confidence 765556777777765
No 51
>COG1470 Predicted membrane protein [Function unknown]
Probab=86.93 E-value=9.5 Score=38.91 Aligned_cols=85 Identities=15% Similarity=0.165 Sum_probs=56.5
Q ss_pred CCCCCceeeeccCCCceeEEEEEEEEeccCCCeeEEEEEe-cCCceEEEEEc-----CeEEEeeCCcEEEEEEEEEeecC
Q 044126 222 DLNYPSMAAQVSSGESFTIKFPRTVTNIGLPNSTYKAGIL-QNSKISVNVVP-----EVLSFRSLNEKKSFIVTVTGKGL 295 (333)
Q Consensus 222 ~lN~pSi~~~~~~~~~~~~t~~rtvtNvg~~~~tY~~~v~-~~~g~~v~v~P-----~~l~~~~~g~~~~~~Vt~~~~~~ 295 (333)
.||.-.+.+-... ..+..++.++.|.|..+.+|.++.. .|.|....+.= +++.+ .+||+++|+|.+.++..
T Consensus 270 El~~s~~~~~i~~--~~t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~n 346 (513)
T COG1470 270 ELNSSDIYLEISP--STTASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLN 346 (513)
T ss_pred EeecccceeEEcc--CCceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCC
Confidence 3444444433322 2456788999999999999999999 68766554432 23555 78999999999998764
Q ss_pred CCCCeEEEEEEEEc
Q 044126 296 ASGSIVSAALVWFD 309 (333)
Q Consensus 296 ~~~~~~~G~i~~~~ 309 (333)
.-.+.|.=.|+-.+
T Consensus 347 a~pG~Ynv~I~A~s 360 (513)
T COG1470 347 ATPGTYNVTITASS 360 (513)
T ss_pred CCCCceeEEEEEec
Confidence 43334443444443
No 52
>COG1470 Predicted membrane protein [Function unknown]
Probab=86.86 E-value=6.1 Score=40.25 Aligned_cols=71 Identities=13% Similarity=-0.007 Sum_probs=55.5
Q ss_pred eeEEEEEEEEeccCCCe-eEEEEEecCCceEEEEEcCeEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEE
Q 044126 238 FTIKFPRTVTNIGLPNS-TYKAGILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWF 308 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~-tY~~~v~~~~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~~~~~G~i~~~ 308 (333)
...++...+.|.|+.+. --++++..|.|-++.|.|.++---++|+++++.+|++++.....+-|+=.|.-+
T Consensus 397 ee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~~k 468 (513)
T COG1470 397 EEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITITAK 468 (513)
T ss_pred ccceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEEEe
Confidence 46777888999998665 467889999999999999977555899999999999998754444455556554
No 53
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm. These proteins oligomerise to form an extensive filament system that extends from sperm villipoda, along the leading edge of the pseudopod. About 30 MSP isoforms may exist in C. elegans. MSPs form a fibrous network, whereby MSP dimers form helical subfilaments that coil around one another to produce filaments, which in turn form supercoils to produce bundles. The crystal structure of MSP from C. elegans reveals an immunoglobulin (Ig)-like seven-stranded beta sandwich fold []. ; GO: 0005198 structural molecule activity; PDB: 1MSP_A 3MSP_B 2BVU_B 2MSP_C 1Z9O_F 1Z9L_A 3IKK_A 1WIC_A 2CRI_A 2RR3_A ....
Probab=86.82 E-value=6.5 Score=31.06 Aligned_cols=54 Identities=15% Similarity=0.034 Sum_probs=41.3
Q ss_pred eeEEEEEEEEeccCCCeeEEEEEecCCceEEEEEcCeEEEeeCCcEEEEEEEEEeec
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAGILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKG 294 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~v~~~~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~ 294 (333)
...+...+|+|.++....|++....|..+. |.|..=.+ .+|++..+.|++....
T Consensus 18 ~~~~~~l~l~N~s~~~i~fKiktt~~~~y~--v~P~~G~i-~p~~~~~i~I~~~~~~ 71 (109)
T PF00635_consen 18 KQQSCELTLTNPSDKPIAFKIKTTNPNRYR--VKPSYGII-EPGESVEITITFQPFD 71 (109)
T ss_dssp S-EEEEEEEEE-SSSEEEEEEEES-TTTEE--EESSEEEE--TTEEEEEEEEE-SSS
T ss_pred ceEEEEEEEECCCCCcEEEEEEcCCCceEE--ecCCCEEE-CCCCEEEEEEEEEecc
Confidence 346677899999999999999988888765 57998777 8999999999999843
No 54
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=83.49 E-value=6.4 Score=39.97 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=48.3
Q ss_pred eeEEEEEEEEeccCCCeeEEEEEecCCceEEEEEcCeEEEeeCCcEEEEEEEEEeec
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAGILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKG 294 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~v~~~~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~ 294 (333)
-.-..+..+.|.+..+.+|+++++..++.++...+..+++ ++|+..++.|.+..+.
T Consensus 346 i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 346 VENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred EEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 4566778899999999999999999999888775457888 8999999999999875
No 55
>cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases. This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu
Probab=82.63 E-value=1.5 Score=35.94 Aligned_cols=30 Identities=23% Similarity=0.108 Sum_probs=26.4
Q ss_pred ccceeEeecHHHHHHHHHHHhccCCCCCceee
Q 044126 14 LDWCIKVWCEEEEARLADAIIGSDTKNPQAEI 45 (333)
Q Consensus 14 ~~~~~~~~~~~~g~~l~~y~~~~s~~~~~~~i 45 (333)
..+|++++..++|+.|++|+ +++.+|+++|
T Consensus 97 ~~iP~v~I~~~~g~~l~~y~--~~~~~~~~~i 126 (126)
T cd02120 97 HVLPAVHVDYEDGTAILSYI--NSTSNPTATI 126 (126)
T ss_pred cccceEEECHHHHHHHHHHH--HcCCCcceeC
Confidence 67999999999999999999 7777777764
No 56
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=78.96 E-value=1.9 Score=48.37 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=22.9
Q ss_pred eeEEeCCccchHHHHHHHHHHHHhhC
Q 044126 107 KYNIISGTSMACPHAAGVAAYVKSFH 132 (333)
Q Consensus 107 ~y~~~sGTSmAaP~VAG~aALl~~~~ 132 (333)
......|||.|+|+.||+.|++-|..
T Consensus 472 ~~~~~GGTS~AtPltAGiiAdi~q~~ 497 (1174)
T COG4934 472 QTYVAGGTSLATPLTAGIIADIEQYI 497 (1174)
T ss_pred EEEEecccccccchHHHHHHHHHHHh
Confidence 45677899999999999999999873
No 57
>PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat
Probab=76.87 E-value=12 Score=32.09 Aligned_cols=69 Identities=7% Similarity=0.106 Sum_probs=49.2
Q ss_pred eeEEEEEEEEeccCCCe-eEEEEEecCCceEEEEEcCeEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEE
Q 044126 238 FTIKFPRTVTNIGLPNS-TYKAGILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWF 308 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~-tY~~~v~~~~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~~~~~G~i~~~ 308 (333)
....+..-+-|..+... --++....-..+++.-.|..+++ .|++.+.++.++++.. ...++.||.|++.
T Consensus 69 ~DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsS-tetGvIfG~I~Yd 138 (140)
T PF07718_consen 69 YDIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSS-TETGVIFGNIVYD 138 (140)
T ss_pred eeEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEe-ccCCEEEEEEEEe
Confidence 34555556667654322 22233333456888888999999 8999999999999977 5568999999986
No 58
>smart00635 BID_2 Bacterial Ig-like domain 2.
Probab=75.29 E-value=11 Score=28.59 Aligned_cols=44 Identities=20% Similarity=0.317 Sum_probs=31.5
Q ss_pred EEEEEcCeEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEEc-CCceEE
Q 044126 267 SVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFD-GSRIVR 315 (333)
Q Consensus 267 ~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~~~~~G~i~~~~-~~~~vr 315 (333)
.+++.|..+++ ..|++..|+++++..... - ...+.|++ +.....
T Consensus 4 ~i~i~p~~~~l-~~G~~~~l~a~~~~~~~~---~-~~~v~w~Ssn~~vat 48 (81)
T smart00635 4 SVTVTPTTASV-KKGLTLQLTATVTPSSAK---V-TGKVTWTSSNPSVAT 48 (81)
T ss_pred EEEEeCCeeEE-eCCCeEEEEEEEECCCCC---c-cceEEEEECCCcEEE
Confidence 47789999999 789999999997654311 2 66788975 444444
No 59
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini.
Probab=73.20 E-value=14 Score=24.99 Aligned_cols=44 Identities=14% Similarity=-0.033 Sum_probs=26.4
Q ss_pred EEEEeccCCCeeEEEEEecCCceEEEEEcCeEEEeeCCcEEEEEEEE
Q 044126 244 RTVTNIGLPNSTYKAGILQNSKISVNVVPEVLSFRSLNEKKSFIVTV 290 (333)
Q Consensus 244 rtvtNvg~~~~tY~~~v~~~~g~~v~v~P~~l~~~~~g~~~~~~Vt~ 290 (333)
.+++|.|+....-+--...=.-..+.. ..=.+ ++||+..++|++
T Consensus 2 F~~~N~g~~~L~I~~v~tsCgCt~~~~--~~~~i-~PGes~~i~v~y 45 (45)
T PF07610_consen 2 FEFTNTGDSPLVITDVQTSCGCTTAEY--SKKPI-APGESGKIKVTY 45 (45)
T ss_pred EEEEECCCCcEEEEEeeEccCCEEeeC--CcceE-CCCCEEEEEEEC
Confidence 468999987665433222222333333 33345 889999999874
No 60
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=67.42 E-value=52 Score=24.93 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=32.3
Q ss_pred eeEEEEEEEEeccCCC-eeEEEEEecCCceEEEEEcCeE-EEeeCCcEEEEEEEEEee
Q 044126 238 FTIKFPRTVTNIGLPN-STYKAGILQNSKISVNVVPEVL-SFRSLNEKKSFIVTVTGK 293 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~-~tY~~~v~~~~g~~v~v~P~~l-~~~~~g~~~~~~Vt~~~~ 293 (333)
...+++.+|+|.|... ..+.+.+... |..+ .-..+ .+ ++|+++++++++..+
T Consensus 19 ~~~~i~~~V~N~G~~~~~~~~v~~~~~-~~~~--~~~~i~~L-~~g~~~~v~~~~~~~ 72 (101)
T PF07705_consen 19 EPVTITVTVKNNGTADAENVTVRLYLD-GNSV--STVTIPSL-APGESETVTFTWTPP 72 (101)
T ss_dssp SEEEEEEEEEE-SSS-BEEEEEEEEET-TEEE--EEEEESEB--TTEEEEEEEEEE-S
T ss_pred CEEEEEEEEEECCCCCCCCEEEEEEEC-Ccee--ccEEECCc-CCCcEEEEEEEEEeC
Confidence 5788899999999864 4566665443 3333 11122 44 789999998888886
No 61
>PLN03080 Probable beta-xylosidase; Provisional
Probab=60.14 E-value=25 Score=38.45 Aligned_cols=53 Identities=9% Similarity=-0.057 Sum_probs=32.5
Q ss_pred eEEEEEEEEeccCCCe--eEEEEEecCCc-eE----EEEEcCeEEEeeCCcEEEEEEEEEe
Q 044126 239 TIKFPRTVTNIGLPNS--TYKAGILQNSK-IS----VNVVPEVLSFRSLNEKKSFIVTVTG 292 (333)
Q Consensus 239 ~~t~~rtvtNvg~~~~--tY~~~v~~~~g-~~----v~v~P~~l~~~~~g~~~~~~Vt~~~ 292 (333)
..+++.+|||+|+.+. +-.+-+..|.+ +. --+--.++.+ ++||+++++++++.
T Consensus 685 ~~~v~v~VtNtG~~~G~evvQlYv~~p~~~~~~P~k~L~gF~kv~L-~~Ges~~V~~~l~~ 744 (779)
T PLN03080 685 RFNVHISVSNVGEMDGSHVVMLFSRSPPVVPGVPEKQLVGFDRVHT-ASGRSTETEIVVDP 744 (779)
T ss_pred eEEEEEEEEECCcccCcEEEEEEEecCccCCCCcchhccCcEeEee-CCCCEEEEEEEeCc
Confidence 4788999999998544 43444444432 11 0011123345 79999999998876
No 62
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=54.53 E-value=1.2e+02 Score=24.95 Aligned_cols=78 Identities=14% Similarity=0.037 Sum_probs=45.5
Q ss_pred eeEEEEEEEEeccCCCeeEEEEEe------cCCce----EEEE---EcCeEEEeeCCcEEEEEEEEEeecCCCC--CeEE
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAGIL------QNSKI----SVNV---VPEVLSFRSLNEKKSFIVTVTGKGLASG--SIVS 302 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~v~------~~~g~----~v~v---~P~~l~~~~~g~~~~~~Vt~~~~~~~~~--~~~~ 302 (333)
+.+.+..++||.|+. +.++.-- ...|. ...- .+..+++ ++|++..+.|.......... ....
T Consensus 18 g~~~~~l~~tN~s~~--~C~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL-~PG~sA~a~l~~~~~~~~~~~~~~~~ 94 (131)
T PF14016_consen 18 GQRHATLTFTNTSDT--PCTLYGYPGVALVDADGAPLGVPAVREGPPPRPVTL-APGGSAYAGLRWSNVGSGGGCKPVTP 94 (131)
T ss_pred CccEEEEEEEECCCC--cEEeccCCcEEEECCCCCcCCccccccCCCCCcEEE-CCCCEEEEEEEEecCCCCCCcCcccc
Confidence 566888999999864 4444321 11122 1111 3456888 89999999999988653333 2222
Q ss_pred EEEEEE--cCCceEEeeE
Q 044126 303 AALVWF--DGSRIVRSPI 318 (333)
Q Consensus 303 G~i~~~--~~~~~vr~P~ 318 (333)
..|... ++...+.+|+
T Consensus 95 ~~l~V~~p~~~~~~~v~~ 112 (131)
T PF14016_consen 95 AGLTVTPPGGTAPVTVPW 112 (131)
T ss_pred CEEEEECCCCCccEEEeC
Confidence 334433 4556666664
No 63
>KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones]
Probab=54.04 E-value=6.6 Score=39.83 Aligned_cols=67 Identities=25% Similarity=0.249 Sum_probs=51.7
Q ss_pred EeCCccchHHHHHHHHHHHHhhCCCCCHHHHHHHHHhcCCCCCCCC------C--CCCccccCCCCcCccccCCC
Q 044126 110 IISGTSMACPHAAGVAAYVKSFHPDWSPSAIKSAIMTTAWPMNSSK------N--TQAEFAYGSGHINPVKAINP 176 (333)
Q Consensus 110 ~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~~L~~tA~~~~~~~------~--~~~~~~~G~G~id~~~A~~~ 176 (333)
--.|||-++|+.||++++.++++|.++-.++..+...++....... . -.....+|.|++|..+....
T Consensus 251 ~h~g~s~~~~~~a~~~~~~~~~~~~ls~~d~~~l~~~~~~~~~~~~~~~~~n~~g~~~~h~~g~~~~~~~~~~~~ 325 (431)
T KOG3525|consen 251 GHTGTSASAPLAAGIIALALEANPCLSWRDSQHLIVLTSRPKVLLKGKWKSNGAGGLVSHLYGFGLLDAKALVSC 325 (431)
T ss_pred cCCCCcCccchhcchhhhhhccCccccccchhhhhhhhcchhhccCCCceEecCCceeeeeecccccCcchhhhh
Confidence 3579999999999999999999999999998888888885422111 1 22345689999998877653
No 64
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=52.97 E-value=1e+02 Score=23.64 Aligned_cols=55 Identities=18% Similarity=0.098 Sum_probs=36.6
Q ss_pred eEEEEEEEEeccCCCeeEEEEEecCCceEEEEEcCeEEEeeCCcEEEEEEEEEeecCCCCCeEE
Q 044126 239 TIKFPRTVTNIGLPNSTYKAGILQNSKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVS 302 (333)
Q Consensus 239 ~~t~~rtvtNvg~~~~tY~~~v~~~~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~~~~~ 302 (333)
...+..+++|.|....++++.-..-. .-.|.++++ ++|+++++.+.+. ..+.||.
T Consensus 19 ~g~l~l~l~N~g~~~~~~~v~~~~y~----~~~~~~~~v-~ag~~~~~~w~l~----~s~gwYD 73 (89)
T PF05506_consen 19 TGNLRLTLSNPGSAAVTFTVYDNAYG----GGGPWTYTV-AAGQTVSLTWPLA----ASGGWYD 73 (89)
T ss_pred CCEEEEEEEeCCCCcEEEEEEeCCcC----CCCCEEEEE-CCCCEEEEEEeec----CCCCcEE
Confidence 34788999999988887777652211 013566777 7899888877652 2346776
No 65
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=52.89 E-value=32 Score=26.51 Aligned_cols=20 Identities=15% Similarity=-0.006 Sum_probs=12.5
Q ss_pred eEEEeeCCcEEEEEEEEEeec
Q 044126 274 VLSFRSLNEKKSFIVTVTGKG 294 (333)
Q Consensus 274 ~l~~~~~g~~~~~~Vt~~~~~ 294 (333)
..++ ++||+++|+.+++...
T Consensus 53 ~~~l-~pGe~~~~~~~~~~~~ 72 (82)
T PF12690_consen 53 EETL-EPGESLTYEETWDLKD 72 (82)
T ss_dssp EEEE--TT-EEEEEEEESS--
T ss_pred EEEE-CCCCEEEEEEEECCCC
Confidence 3466 8899999988887654
No 66
>PRK15308 putative fimbrial protein TcfA; Provisional
Probab=49.78 E-value=65 Score=30.01 Aligned_cols=54 Identities=11% Similarity=0.046 Sum_probs=40.0
Q ss_pred eEEEEEEEEeccCCCeeEEEEEec---C---Cc----------eEEEEEcCeEEEeeCCcEEEEEEEEEee
Q 044126 239 TIKFPRTVTNIGLPNSTYKAGILQ---N---SK----------ISVNVVPEVLSFRSLNEKKSFIVTVTGK 293 (333)
Q Consensus 239 ~~t~~rtvtNvg~~~~tY~~~v~~---~---~g----------~~v~v~P~~l~~~~~g~~~~~~Vt~~~~ 293 (333)
......+|.|.|+.+..+++++.. | .+ -++-++|..|.+ ++|+++.++|.-...
T Consensus 32 ~~~~~v~V~N~g~~~~~vqV~v~r~~~PG~~~e~~~~~~~~~~~eLiaSP~~l~L-~pg~~q~IRli~lg~ 101 (234)
T PRK15308 32 EEATSLFVYSKSDHTQYVRTRIKRIEHPATPQEKEVPAGNDIETGLVVSPEKFAL-PAGTTRTVRVISLQA 101 (234)
T ss_pred cceEEEEEEeCCCCcEEEEEEEEEEcCCCCCCCcccccccCCCCcEEEcCceeEE-CCCCeEEEEEEEcCC
Confidence 445567899999988888887653 1 11 157789999999 899999998765553
No 67
>cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa). This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=49.10 E-value=20 Score=29.56 Aligned_cols=32 Identities=13% Similarity=0.027 Sum_probs=25.9
Q ss_pred ccccceeEeecHHHHHHHHHHHhccCCCCCceee
Q 044126 12 IKLDWCIKVWCEEEEARLADAIIGSDTKNPQAEI 45 (333)
Q Consensus 12 ~~~~~~~~~~~~~~g~~l~~y~~~~s~~~~~~~i 45 (333)
....+|+++++.++|+.|++.+ ..+..+++.|
T Consensus 85 ~~i~IP~v~Is~~dG~~L~~~l--~~g~~~~~~~ 116 (118)
T cd02127 85 RRADIPAAFLLGKNGYMIRKTL--ERLGLPYAII 116 (118)
T ss_pred CCceEEEEEecHHHHHHHHHHH--HcCCceEEee
Confidence 4567899999999999999999 6666665543
No 68
>cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1. A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup.
Probab=48.94 E-value=20 Score=29.11 Aligned_cols=26 Identities=8% Similarity=0.081 Sum_probs=21.7
Q ss_pred cccceeEeecHHHHHHHHHHHhccCCCC
Q 044126 13 KLDWCIKVWCEEEEARLADAIIGSDTKN 40 (333)
Q Consensus 13 ~~~~~~~~~~~~~g~~l~~y~~~~s~~~ 40 (333)
...+|.++++.++|+.|++|+ +.+.+
T Consensus 88 ~~~iP~v~V~~~~g~~l~~~l--~~g~~ 113 (118)
T cd04818 88 DITIPAVMISQADGDALKAAL--AAGGT 113 (118)
T ss_pred CCEEeEEEecHHHHHHHHHHH--hcCCc
Confidence 457899999999999999999 54443
No 69
>cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins. This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr
Probab=47.88 E-value=20 Score=29.76 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=22.1
Q ss_pred ccccceeEeecHHHHHHHHHHHhccCCC
Q 044126 12 IKLDWCIKVWCEEEEARLADAIIGSDTK 39 (333)
Q Consensus 12 ~~~~~~~~~~~~~~g~~l~~y~~~~s~~ 39 (333)
+...+|+++++..||+.|++++ ....
T Consensus 95 ~~~~IP~v~I~~~dG~~L~~~l--~~~~ 120 (126)
T cd02126 95 DDVTIPVVFLFSKEGSKLLAAI--KEHQ 120 (126)
T ss_pred CCCeEEEEEEEHHHHHHHHHHH--HhCC
Confidence 3678999999999999999999 5443
No 70
>PRK15098 beta-D-glucoside glucohydrolase; Provisional
Probab=46.93 E-value=47 Score=36.22 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=35.0
Q ss_pred eeEEEEEEEEeccCC--CeeEEEEEecCCceEEEEEc-------CeEEEeeCCcEEEEEEEEEeec
Q 044126 238 FTIKFPRTVTNIGLP--NSTYKAGILQNSKISVNVVP-------EVLSFRSLNEKKSFIVTVTGKG 294 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~--~~tY~~~v~~~~g~~v~v~P-------~~l~~~~~g~~~~~~Vt~~~~~ 294 (333)
+..+++.+|||+|+. .++-++-+..|.+- + ..| .++.+ ++||+++++++++...
T Consensus 667 ~~i~v~v~V~NtG~~~G~EVvQlYv~~~~~~-~-~~P~k~L~gF~Kv~L-~pGes~~V~~~l~~~~ 729 (765)
T PRK15098 667 GKVTASVTVTNTGKREGATVVQLYLQDVTAS-M-SRPVKELKGFEKIML-KPGETQTVSFPIDIEA 729 (765)
T ss_pred CeEEEEEEEEECCCCCccEEEEEeccCCCCC-C-CCHHHhccCceeEeE-CCCCeEEEEEeecHHH
Confidence 467899999999974 34444444444321 1 122 23355 8999999999988754
No 71
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=45.45 E-value=22 Score=23.55 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=19.3
Q ss_pred HHHHHhhCCCCCHHHHHHHHHhcC
Q 044126 125 AAYVKSFHPDWSPSAIKSAIMTTA 148 (333)
Q Consensus 125 aALl~~~~p~~sp~~ik~~L~~tA 148 (333)
+--|++.+|+|+...|+..|...-
T Consensus 5 v~~L~~mFP~~~~~~I~~~L~~~~ 28 (42)
T PF02845_consen 5 VQQLQEMFPDLDREVIEAVLQANN 28 (42)
T ss_dssp HHHHHHHSSSS-HHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCHHHHHHHHHHcC
Confidence 456889999999999999997653
No 72
>cd00538 PA PA: Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g
Probab=45.24 E-value=26 Score=28.06 Aligned_cols=26 Identities=8% Similarity=-0.107 Sum_probs=22.0
Q ss_pred ccccceeEeecHHHHHHHHHHHhccCCC
Q 044126 12 IKLDWCIKVWCEEEEARLADAIIGSDTK 39 (333)
Q Consensus 12 ~~~~~~~~~~~~~~g~~l~~y~~~~s~~ 39 (333)
....+|+++++.++|+.|++|+ .+..
T Consensus 95 ~~~~iP~~~is~~~g~~l~~~~--~~~~ 120 (126)
T cd00538 95 TDPSIPTVGISYADGEALLSLL--EAGK 120 (126)
T ss_pred CCCcEeEEEeCHHHHHHHHHHH--hcCC
Confidence 4567899999999999999999 5543
No 73
>cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH).This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=44.23 E-value=24 Score=28.85 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=21.6
Q ss_pred ccccceeEeecHHHHHHHHHHHhccCCC
Q 044126 12 IKLDWCIKVWCEEEEARLADAIIGSDTK 39 (333)
Q Consensus 12 ~~~~~~~~~~~~~~g~~l~~y~~~~s~~ 39 (333)
....+|++.++.++|+.|++++ ..+.
T Consensus 91 ~~~~iP~~~Is~~~G~~l~~~l--~~g~ 116 (122)
T cd04816 91 IDLKVPVGVITKAAGAALRRRL--GAGE 116 (122)
T ss_pred CCCeeeEEEEcHHHHHHHHHHH--cCCC
Confidence 3456899999999999999999 5543
No 74
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.65 E-value=1.9e+02 Score=25.79 Aligned_cols=69 Identities=17% Similarity=0.185 Sum_probs=43.5
Q ss_pred eeEEEEEEEEeccCCCeeEEEEEec---C-CceEEEEEcCeEEEe--eCCcEEEEEEEEEeecCCCCCeEEEE--EEEEc
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAGILQ---N-SKISVNVVPEVLSFR--SLNEKKSFIVTVTGKGLASGSIVSAA--LVWFD 309 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~v~~---~-~g~~v~v~P~~l~~~--~~g~~~~~~Vt~~~~~~~~~~~~~G~--i~~~~ 309 (333)
...+++.++.|+|+. .-|.+++.. | +.+++.---.+.+++ ++|+..+..+++++.. .+.+.++. |+.++
T Consensus 38 ~~v~V~~~iyN~G~~-~A~dV~l~D~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh~~vv~p~~--~G~f~~~~a~VtY~~ 114 (181)
T PF05753_consen 38 EDVTVTYTIYNVGSS-AAYDVKLTDDSFPPEDFELVSGSLSASWERIPPGENVSHSYVVRPKK--SGYFNFTPAVVTYRD 114 (181)
T ss_pred cEEEEEEEEEECCCC-eEEEEEEECCCCCccccEeccCceEEEEEEECCCCeEEEEEEEeeee--eEEEEccCEEEEEEC
Confidence 578999999999985 567787765 2 455542111122222 8899999988888753 34444444 44443
No 75
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=42.61 E-value=2.8e+02 Score=27.67 Aligned_cols=77 Identities=19% Similarity=0.187 Sum_probs=37.7
Q ss_pred eeEEEEEEEEeccCCCeeEEE----EEec------------C------CceEEEEEcCeEEEeeCCcEEEEEEEEEeec-
Q 044126 238 FTIKFPRTVTNIGLPNSTYKA----GILQ------------N------SKISVNVVPEVLSFRSLNEKKSFIVTVTGKG- 294 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~----~v~~------------~------~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~- 294 (333)
++.+++.+|||.|+....-.= .+.. | .| ++|+|+. -+ .+||+++++|+++-..
T Consensus 263 R~l~~~l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~g--L~vs~~~-pI-~PGETrtl~V~a~dA~W 338 (381)
T PF04744_consen 263 RTLTMTLTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERG--LSVSDNS-PI-APGETRTLTVEAQDAAW 338 (381)
T ss_dssp SEEEEEEEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT---EEES--S--B--TT-EEEEEEEEE-HHH
T ss_pred cEEEEEEEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCc--ceeCCCC-Cc-CCCceEEEEEEeehhHH
Confidence 678889999999986542211 1111 1 13 3445553 23 7999999999886421
Q ss_pred -------C-CCCCeEEEEEEE-Ec-CCceEEeeE
Q 044126 295 -------L-ASGSIVSAALVW-FD-GSRIVRSPI 318 (333)
Q Consensus 295 -------~-~~~~~~~G~i~~-~~-~~~~vr~P~ 318 (333)
. -..+-.||.|.+ .| .+++.-+.+
T Consensus 339 eveRL~~l~~D~dsrfgGLLff~d~~G~r~i~~I 372 (381)
T PF04744_consen 339 EVERLSDLIYDPDSRFGGLLFFFDASGNRYISEI 372 (381)
T ss_dssp HHTTGGGGGGSSS-EEEEEEEEEETTS-EEEEEE
T ss_pred HHhhhhhhhcCcccceeEEEEEEcCCCCEEEEec
Confidence 1 122445777654 33 455444443
No 76
>cd00407 Urease_beta Urease beta-subunit; Urease is a nickel-dependent metalloenzyme that catalyzes the hydrolysis of urea to form ammonia and carbon dioxide. Nickel-dependent ureases are found in bacteria, archaea, fungi and plants. Their primary role is to allow the use of external and internally-generated urea as a nitrogen source. The enzyme consists of three subunits, alpha, beta and gamma, which can exist as separate proteins or can be fused on a single protein chain. The alpha-beta-gamma heterotrimer forms multimers, mainly trimers. The large alpha subunit is the catalytic domain containing an active site with a bi-nickel center complexed by a carbamylated lysine. The beta and gamma subunits play a role in subunit association to form the higher order trimers.
Probab=42.20 E-value=53 Score=26.60 Aligned_cols=50 Identities=16% Similarity=0.166 Sum_probs=30.5
Q ss_pred eeEEEEEEEEeccCCCe----eEEEEEe---------cCCceEEEEEcC--eEEEeeCCcEEEEEEE
Q 044126 238 FTIKFPRTVTNIGLPNS----TYKAGIL---------QNSKISVNVVPE--VLSFRSLNEKKSFIVT 289 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~----tY~~~v~---------~~~g~~v~v~P~--~l~~~~~g~~~~~~Vt 289 (333)
+..+++.+|+|.|+.+. .|+.-=. ..-|..+.+ |+ .+.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRpIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (101)
T cd00407 18 GREAVTLKVKNTGDRPIQVGSHYHFFEVNPALKFDREKAYGMRLDI-PAGTAVRF-EPGEEKEVELV 82 (101)
T ss_pred CCCEEEEEEEeCCCcceEEccccchhhcCccccccHHHcccceecc-cCCCeEEE-CCCCeEEEEEE
Confidence 45677889999998653 2332100 012555555 43 4677 78999988763
No 77
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=41.97 E-value=1.1e+02 Score=21.32 Aligned_cols=38 Identities=26% Similarity=0.183 Sum_probs=24.5
Q ss_pred eeEEEEEEEEeccCCCee-EEEEEecCCceEEEEEcCeEEE
Q 044126 238 FTIKFPRTVTNIGLPNST-YKAGILQNSKISVNVVPEVLSF 277 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~t-Y~~~v~~~~g~~v~v~P~~l~~ 277 (333)
...+++.+++|.|....+ ..+.-..|.|++. .|.++++
T Consensus 12 d~v~Yti~v~N~g~~~a~~v~v~D~lP~g~~~--v~~S~~~ 50 (53)
T TIGR01451 12 DTITYTITVTNNGNVPATNVVVTDILPSGTTF--VSNSVTV 50 (53)
T ss_pred CEEEEEEEEEECCCCceEeEEEEEcCCCCCEE--EeCcEEE
Confidence 578999999999986543 2333334666554 4666555
No 78
>PRK13203 ureB urease subunit beta; Reviewed
Probab=40.39 E-value=51 Score=26.75 Aligned_cols=50 Identities=16% Similarity=0.147 Sum_probs=30.3
Q ss_pred eeEEEEEEEEeccCCCee----EEEEE---------ecCCceEEEEEcC--eEEEeeCCcEEEEEEE
Q 044126 238 FTIKFPRTVTNIGLPNST----YKAGI---------LQNSKISVNVVPE--VLSFRSLNEKKSFIVT 289 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~t----Y~~~v---------~~~~g~~v~v~P~--~l~~~~~g~~~~~~Vt 289 (333)
+..+++.+|+|+|+.+.. |+.-= +..-|..+.+ |+ .+.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSH~HF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (102)
T PRK13203 18 GRETVTLTVANTGDRPIQVGSHYHFFEVNPALSFDREAARGMRLNI-PAGTAVRF-EPGQTREVELV 82 (102)
T ss_pred CCCEEEEEEEeCCCCceEEccccchhhcCcchhccHhhhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 456788999999987542 33210 0112445544 43 4677 78999988763
No 79
>PF00699 Urease_beta: Urease beta subunit CAUTION: The Prosite patterns do not match this subunit of the enzyme; InterPro: IPR002019 Urease 3.5.1.5 from EC is a nickel-binding enzyme that catalyzes the hydrolysis of urea to carbon dioxide and ammonia []: Urea + H2O = CO2 + 2 NH3 Historically, it was the first enzyme to be crystallized (in 1926). It is mainly found in plant seeds and microorganisms. In plants, urease is a hexamer of identical chains. In bacteria [], it consists of either two or three different subunits (alpha IPR005847 from INTERPRO, beta, described in this entry, and gamma IPR002026 from INTERPRO). The structure of the urease complex is known []. This subunit does not appear to take part in the catalytic mechanism. This subunit is known (confusingly) as alpha in Helicobacter.; GO: 0009039 urease activity, 0016151 nickel ion binding, 0006807 nitrogen compound metabolic process; PDB: 1EJS_B 1EJW_B 1A5N_B 1A5K_B 1A5M_B 1EJR_B 1EJX_B 1A5L_B 1KRB_B 1FWA_B ....
Probab=39.00 E-value=1.6e+02 Score=23.86 Aligned_cols=49 Identities=16% Similarity=0.167 Sum_probs=26.4
Q ss_pred eeEEEEEEEEeccCCCee----EEEEEec----------CCceEEEEEcC--eEEEeeCCcEEEEEEE
Q 044126 238 FTIKFPRTVTNIGLPNST----YKAGILQ----------NSKISVNVVPE--VLSFRSLNEKKSFIVT 289 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~t----Y~~~v~~----------~~g~~v~v~P~--~l~~~~~g~~~~~~Vt 289 (333)
+..+++.+|+|+|+.+.. |+.- +. .-|..+.+ |+ .+.| .+|+++++++.
T Consensus 17 gr~~~~l~V~N~GDRPIQVGSH~HF~-E~N~aL~FDR~~A~G~RLdI-PaGTavRF-EPG~~k~V~LV 81 (100)
T PF00699_consen 17 GRERITLEVTNTGDRPIQVGSHYHFF-EVNPALEFDREAAYGMRLDI-PAGTAVRF-EPGDTKEVELV 81 (100)
T ss_dssp TSEEEEEEEEE-SSS-EEEETTS-GG-GS-TTEES-HHHHTTEEE-S-STT-EEEE--TT-EEEEEEE
T ss_pred CCcEEEEEEEeCCCcceEEccccCHH-HHhHHhhhhHHHhCCcccCc-CCCCeEEE-CCCCcEEEEEE
Confidence 457888999999987532 1110 11 12555555 44 3677 77999988763
No 80
>PRK13202 ureB urease subunit beta; Reviewed
Probab=38.99 E-value=60 Score=26.44 Aligned_cols=48 Identities=8% Similarity=0.088 Sum_probs=29.5
Q ss_pred EEEEEEEEeccCCCe----eEEEEEe---------cCCceEEEEEcC--eEEEeeCCcEEEEEEE
Q 044126 240 IKFPRTVTNIGLPNS----TYKAGIL---------QNSKISVNVVPE--VLSFRSLNEKKSFIVT 289 (333)
Q Consensus 240 ~t~~rtvtNvg~~~~----tY~~~v~---------~~~g~~v~v~P~--~l~~~~~g~~~~~~Vt 289 (333)
.+++.+|+|+|+.+. .|+.-=. ..-|..+.+ |+ .+.| ++|+++++++.
T Consensus 21 ~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 83 (104)
T PRK13202 21 SRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDI-PAATAVRF-EPGIPQIVGLV 83 (104)
T ss_pred ceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCccccc-CCCCeEEE-CCCCeEEEEEE
Confidence 578899999998654 2333110 112445544 43 4677 78999988763
No 81
>TIGR00192 urease_beta urease, beta subunit. In a number of species, including B.subtilis, Synechocystis, and Haemophilus influenzae, urease subunits beta and gamma are encoded as separate polypeptides. In Helicobacter pylori UreA and in the fission yeast Schizosaccharomyces pombe, beta subunit-like sequence follows gamma subunit-like sequence in a single chain; the fission yeast protein contains additional C-terminal regions.
Probab=38.97 E-value=60 Score=26.30 Aligned_cols=50 Identities=16% Similarity=0.116 Sum_probs=30.4
Q ss_pred eeEEEEEEEEeccCCCe----eEEEEE---------ecCCceEEEEEcC--eEEEeeCCcEEEEEEE
Q 044126 238 FTIKFPRTVTNIGLPNS----TYKAGI---------LQNSKISVNVVPE--VLSFRSLNEKKSFIVT 289 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~----tY~~~v---------~~~~g~~v~v~P~--~l~~~~~g~~~~~~Vt 289 (333)
+..+++.+|+|.|+.+. .|+.-= ...-|..+.+ |+ .+.| ++|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdI-paGTavRF-EPG~~k~V~LV 82 (101)
T TIGR00192 18 GRKTVSVKVKNTGDRPIQVGSHFHFFEVNRALDFDRELAFGMRLDI-PSGTAVRF-EPGEEKSVELV 82 (101)
T ss_pred CCcEEEEEEEeCCCcceEEccccchhhcCcceeecHhhhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 34677889999998653 233210 0112445555 43 4677 78999988763
No 82
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=37.06 E-value=2.2e+02 Score=27.02 Aligned_cols=21 Identities=24% Similarity=0.289 Sum_probs=11.7
Q ss_pred EEEEEEEE-----cCCceEEeeEEEE
Q 044126 301 VSAALVWF-----DGSRIVRSPIVVH 321 (333)
Q Consensus 301 ~~G~i~~~-----~~~~~vr~P~~v~ 321 (333)
-.|.+.|+ .++..+++-|.|.
T Consensus 289 ~~g~~~W~~~l~~g~~~~l~~~y~v~ 314 (317)
T PF13598_consen 289 KDGILEWKVTLPPGESRTLEFSYEVE 314 (317)
T ss_pred CCCEEEEEEEECCCCEEEEEEEEEEE
Confidence 45677774 2445555555554
No 83
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=36.89 E-value=2.9e+02 Score=25.40 Aligned_cols=87 Identities=9% Similarity=0.028 Sum_probs=51.3
Q ss_pred eeEEEEEEEEeccCCCeeEEEEEecC---CceEEEEEcCeEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEEc-----
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAGILQN---SKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFD----- 309 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~v~~~---~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~~~~~G~i~~~~----- 309 (333)
.....+.+|+|.++.+..-...++.. ....+.|+|..+++ ++|+++.++|..... .+.+.-..=+|.+..
T Consensus 38 ~~~~~si~v~N~~~~p~lvQ~wv~~~~~~~~~~fivtPPl~rl-~pg~~q~vRii~~~~-lp~drEs~f~l~v~~IP~~~ 115 (230)
T PRK09918 38 SDGEGSINVKNTDSNPILLYTTLVDLPEDKSKLLLVTPPVARV-EPGQSQQVRFILKSG-SPLNTEHLLRVSFEGVPPKP 115 (230)
T ss_pred CCCeEEEEEEcCCCCcEEEEEEEecCCCCCCCCEEEcCCeEEE-CCCCceEEEEEECCC-CCCCeeEEEEEEEEEcCCCC
Confidence 34567788899886543333334321 12357889999999 889999999876542 233321111344331
Q ss_pred -CCce------EEeeEEEEeeccc
Q 044126 310 -GSRI------VRSPIVVHSQGLQ 326 (333)
Q Consensus 310 -~~~~------vr~P~~v~~~~~~ 326 (333)
++.. .|+|+-+++..+.
T Consensus 116 ~~~~~l~ia~r~~iklfyRP~~l~ 139 (230)
T PRK09918 116 GGKNKVVMPIRQDLPVLIQPAALP 139 (230)
T ss_pred CCCCEEEEEEEeEEEEEEeCCCCC
Confidence 2222 2677777777654
No 84
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=36.22 E-value=31 Score=22.28 Aligned_cols=13 Identities=38% Similarity=0.613 Sum_probs=10.8
Q ss_pred chHHHHHHHHHHH
Q 044126 116 MACPHAAGVAAYV 128 (333)
Q Consensus 116 mAaP~VAG~aALl 128 (333)
.|||.+||+++-+
T Consensus 14 LAAP~iagIi~s~ 26 (35)
T PF13940_consen 14 LAAPIIAGIIASL 26 (35)
T ss_pred hHhHHHHHHHHHH
Confidence 5899999998744
No 85
>PRK15019 CsdA-binding activator; Provisional
Probab=35.94 E-value=37 Score=29.33 Aligned_cols=32 Identities=13% Similarity=0.096 Sum_probs=26.6
Q ss_pred EeCCccchHHHHHHHHHHHHhhCCCCCHHHHHH
Q 044126 110 IISGTSMACPHAAGVAAYVKSFHPDWSPSAIKS 142 (333)
Q Consensus 110 ~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~ 142 (333)
.+.|.| =|++|-|.+|||.+.+-..+|++|.+
T Consensus 78 ~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~ 109 (147)
T PRK15019 78 HFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQA 109 (147)
T ss_pred EEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 334555 48999999999999999999999865
No 86
>TIGR00845 caca sodium/calcium exchanger 1. This model is specific for the eukaryotic sodium ion/calcium ion exchangers of the Caca family
Probab=35.37 E-value=4.2e+02 Score=29.76 Aligned_cols=26 Identities=15% Similarity=0.152 Sum_probs=19.0
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcCC
Q 044126 124 VAAYVKSFHPDWSPSAIKSAIMTTAW 149 (333)
Q Consensus 124 ~aALl~~~~p~~sp~~ik~~L~~tA~ 149 (333)
+.-=++|+||+.+.+|+..+....+.
T Consensus 322 ~l~el~~~~p~~~~~~l~~~a~~~~~ 347 (928)
T TIGR00845 322 ILKELKQKHPDKDLEQLEEMANYQVL 347 (928)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHh
Confidence 44456788999999998777655553
No 87
>cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR). This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic
Probab=34.82 E-value=43 Score=27.94 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=22.2
Q ss_pred cccccceeEeecHHHHHHHHHHHhccCCC
Q 044126 11 LIKLDWCIKVWCEEEEARLADAIIGSDTK 39 (333)
Q Consensus 11 l~~~~~~~~~~~~~~g~~l~~y~~~~s~~ 39 (333)
.+.+.+|+++++.++|+.|++.+ ..+.
T Consensus 95 ~~~i~IP~v~Is~~~G~~L~~~l--~~g~ 121 (127)
T cd02125 95 IEKITIPSALITKAFGEKLKKAI--SNGE 121 (127)
T ss_pred CCCceEeEEEECHHHHHHHHHHH--hcCC
Confidence 34567899999999999999999 5443
No 88
>cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY). This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab
Probab=34.47 E-value=44 Score=27.23 Aligned_cols=28 Identities=11% Similarity=-0.040 Sum_probs=22.7
Q ss_pred cccceeEeecHHHHHHHHHHHhccCCCCCc
Q 044126 13 KLDWCIKVWCEEEEARLADAIIGSDTKNPQ 42 (333)
Q Consensus 13 ~~~~~~~~~~~~~g~~l~~y~~~~s~~~~~ 42 (333)
...+|+++++.++|+.|++.+ .++.+.+
T Consensus 92 ~~~Ip~v~Is~~~G~~L~~~l--~~g~~v~ 119 (122)
T cd02130 92 GPYVPTVGISQEDGKALVAAL--ANGGEVS 119 (122)
T ss_pred CCEeeEEEecHHHHHHHHHHH--hcCCcEE
Confidence 456899999999999999999 6655433
No 89
>PF02368 Big_2: Bacterial Ig-like domain (group 2); InterPro: IPR003343 Proteins that contain this domain are found in a variety of bacterial and phage surface proteins such as intimins as well as in some uncharacterised eukaryote proteins. Intimin is a bacterial cell-adhesion molecule that mediates the intimate bacterial host-cell interaction. It contains three domains; two immunoglobulin-like domains and a C-type lectin-like module implying that carbohydrate recognition may be important in intimin-mediated cell adhesion [].; PDB: 3NCX_B 3NCW_D 4AQ1_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 2L04_A.
Probab=34.34 E-value=40 Score=25.14 Aligned_cols=37 Identities=16% Similarity=0.425 Sum_probs=27.6
Q ss_pred EEEEEcCeEEEeeCCcEEEEEEEEEeecCCCCCeEEEEEEEEc
Q 044126 267 SVNVVPEVLSFRSLNEKKSFIVTVTGKGLASGSIVSAALVWFD 309 (333)
Q Consensus 267 ~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~~~~~G~i~~~~ 309 (333)
+|++.|..+.+ ..|++..|++.+....... ..+.|.+
T Consensus 4 ~I~i~~~~~~l-~~G~~~~l~~~~~~~~~~~-----~~v~w~s 40 (79)
T PF02368_consen 4 SITITPTSVTL-KVGQTQQLTATVTPSDGSN-----SKVTWSS 40 (79)
T ss_dssp SEEETTTEEEC-ETTCEETTEEEEEEEESTT-----SCEEEEE
T ss_pred EEEEECCEEEE-ECCCEEEEEEEEEECCCcE-----eEEEEEe
Confidence 36678888888 7899999999888866332 4567753
No 90
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=34.34 E-value=41 Score=28.68 Aligned_cols=33 Identities=15% Similarity=0.098 Sum_probs=27.3
Q ss_pred EEeCCccchHHHHHHHHHHHHhhCCCCCHHHHHH
Q 044126 109 NIISGTSMACPHAAGVAAYVKSFHPDWSPSAIKS 142 (333)
Q Consensus 109 ~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~ 142 (333)
..+.|.| =|++|-|.+|||.+.+-..+|++|.+
T Consensus 72 ~~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~ 104 (138)
T TIGR03391 72 LHFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLA 104 (138)
T ss_pred EEEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 3345666 48999999999999999999999863
No 91
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=33.69 E-value=19 Score=15.85 Aligned_cols=6 Identities=50% Similarity=0.900 Sum_probs=4.4
Q ss_pred cccCCC
Q 044126 61 SFSSRG 66 (333)
Q Consensus 61 ~fSs~G 66 (333)
+|+|||
T Consensus 3 afnswg 8 (8)
T PF08260_consen 3 AFNSWG 8 (8)
T ss_pred cccccC
Confidence 578887
No 92
>PRK13205 ureB urease subunit beta; Reviewed
Probab=33.25 E-value=74 Score=27.69 Aligned_cols=50 Identities=6% Similarity=0.111 Sum_probs=30.6
Q ss_pred eeEEEEEEEEeccCCCe----eEEEEEe---------cCCceEEEEEcC--eEEEeeCCcEEEEEEE
Q 044126 238 FTIKFPRTVTNIGLPNS----TYKAGIL---------QNSKISVNVVPE--VLSFRSLNEKKSFIVT 289 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~----tY~~~v~---------~~~g~~v~v~P~--~l~~~~~g~~~~~~Vt 289 (333)
+..+++.+|+|+|+.+. .|++-=. ..-|..+.+ |+ .+.| .+|+++++++.
T Consensus 18 GR~~i~L~V~NtGDRPIQVGSHyHF~EvN~AL~FDR~~A~G~RLdI-PAGTAVRF-EPGe~ktV~LV 82 (162)
T PRK13205 18 GREAKTIEIINTGDRPVQIGSHFHFAEVNPSISFDRSEGYGFRLDI-PSGTAVRL-EPGDARTVNLV 82 (162)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHHHhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 45678899999998654 3333110 012445544 43 4677 77899988764
No 93
>PF04255 DUF433: Protein of unknown function (DUF433); InterPro: IPR007367 This is a family of uncharacterised proteins.; PDB: 2GA1_B.
Probab=32.43 E-value=39 Score=23.97 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=25.6
Q ss_pred eeEEeCCccchHHHHHHHHH------HHHhhCCCCCHHHHHHHHH
Q 044126 107 KYNIISGTSMACPHAAGVAA------YVKSFHPDWSPSAIKSAIM 145 (333)
Q Consensus 107 ~y~~~sGTSmAaP~VAG~aA------Ll~~~~p~~sp~~ik~~L~ 145 (333)
+--.+-||-+..-.|....+ -|.+.||+++.++|+++|.
T Consensus 10 G~P~i~GTRI~v~~i~~~~~~G~s~eeI~~~yp~Lt~~~i~aAl~ 54 (56)
T PF04255_consen 10 GQPVIRGTRIPVRDILDLLAAGESPEEIAEDYPSLTLEDIRAALA 54 (56)
T ss_dssp G--EETTSS-BHHHHHHHHHTT--HHHHHHHSTT--HHHHHHHHH
T ss_pred CcceEcCceecHHHHHHHHHcCCCHHHHHHHCCCCCHHHHHHHHH
Confidence 44577888887777766642 4566799999999999984
No 94
>PRK13201 ureB urease subunit beta; Reviewed
Probab=32.22 E-value=82 Score=26.80 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=30.4
Q ss_pred eeEEEEEEEEeccCCCe----eEEEEEe---------cCCceEEEEEcC--eEEEeeCCcEEEEEEE
Q 044126 238 FTIKFPRTVTNIGLPNS----TYKAGIL---------QNSKISVNVVPE--VLSFRSLNEKKSFIVT 289 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~----tY~~~v~---------~~~g~~v~v~P~--~l~~~~~g~~~~~~Vt 289 (333)
+..+++.+|+|+|+.+. .|++-=. ..-|..+.+ |+ .+.| .+|+++++++.
T Consensus 18 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdI-PAGTAVRF-EPG~~k~V~LV 82 (136)
T PRK13201 18 HHPETVIEVENTGDRPIQVGSHFHFYEANAALDFEREMAYGKHLDI-PAGAAVRF-EPGDKKEVQLV 82 (136)
T ss_pred CCCEEEEEEEeCCCcceEeccccchhhcCccccccHhhhcCccccc-CCCCeEeE-CCCCeEEEEEE
Confidence 35678889999998654 2333100 112445544 43 4677 78999988774
No 95
>PF00553 CBM_2: Cellulose binding domain; InterPro: IPR001919 The microbial degradation of cellulose and xylans requires several types of enzyme such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) []. Structurally, cellulases and xylanases generally consist of a catalytic domain joined to a cellulose-binding domain (CBD) by a short linker sequence rich in proline and/or hydroxy-amino acids. The CBD domain is found either at the N-terminal or at the C-terminal extremity of these enzymes. As it is shown in the following schematic representation, there are two conserved cysteines in this CBD domain - one at each extremity of the domain - which have been shown [] to be involved in a disulphide bond. There are also four conserved tryptophan, two are involved in cellulose binding. The CBD of a number of bacterial cellulases has been shown to consist of about 105 amino acid residues [, ]. +-------------------------------------------------+ | | xCxxxxWxxxxxNxxxWxxxxxxxWxxxxxxxxWNxxxxxGxxxxxxxxxxCx 'C': conserved cysteine involved in a disulphide bond. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process; PDB: 2CZN_A 2CWR_A 1HEH_C 1HEJ_C 3NDZ_E 3NDY_E 2XBD_A 1E5C_A 1XBD_A 1E5B_A ....
Probab=32.03 E-value=2.5e+02 Score=22.05 Aligned_cols=30 Identities=20% Similarity=0.132 Sum_probs=23.7
Q ss_pred EEEEEEEEeccCCC-eeEEEEEecCCceEEE
Q 044126 240 IKFPRTVTNIGLPN-STYKAGILQNSKISVN 269 (333)
Q Consensus 240 ~t~~rtvtNvg~~~-~tY~~~v~~~~g~~v~ 269 (333)
.....+|+|.++.. .-|++++..|.+.+|.
T Consensus 15 f~~~v~v~N~~~~~i~~W~v~~~~~~~~~i~ 45 (101)
T PF00553_consen 15 FQGEVTVTNNGSSPINGWTVTFTFPSGQTIT 45 (101)
T ss_dssp EEEEEEEEESSSSTEESEEEEEEESTTEEEE
T ss_pred eEEEEEEEECCCCccCCEEEEEEeCCCCEEe
Confidence 45578999999876 3699999998777654
No 96
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=31.71 E-value=49 Score=28.26 Aligned_cols=32 Identities=22% Similarity=0.272 Sum_probs=26.5
Q ss_pred EeCCccchHHHHHHHHHHHHhhCCCCCHHHHHH
Q 044126 110 IISGTSMACPHAAGVAAYVKSFHPDWSPSAIKS 142 (333)
Q Consensus 110 ~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~ 142 (333)
.+.|-| =|++|-|.+||+.+.+-..+|++|.+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~ 99 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVN 99 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 344555 58999999999999999999999853
No 97
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds. Members of the transglutaminase family usually have three domains: N-terminal (IPR001102 from INTERPRO), middle (IPR013808 from INTERPRO) and C-terminal. The middle domain is usually well conserved, but family members can display major differences in their N- and C-terminal domains, although their overall structure is conserved []. This entry represents the C-terminal domain found in transglutaminases, which consists of an immunoglobulin-like beta-sandwich consisting of seven strands in two sheets with a Greek key topology. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. Protein-glutamine gamma-glutamyltransferases (2.3.2.13 from EC) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ].; GO: 0003810 protein-glutamine gamma-glutamyltransferase activity, 0018149 peptide cross-linking; PDB: 2XZZ_A 1GGY_B 1FIE_B 1GGU_B 1GGT_B 1F13_A 1QRK_B 1EVU_A 1EX0_B 1L9N_B ....
Probab=31.41 E-value=2.6e+02 Score=21.95 Aligned_cols=55 Identities=15% Similarity=0.053 Sum_probs=35.0
Q ss_pred eeEEEEEEEEeccCCC-ee-----EEEEEecCCceE---EEEEcCeEEEeeCCcEEEEEEEEEeec
Q 044126 238 FTIKFPRTVTNIGLPN-ST-----YKAGILQNSKIS---VNVVPEVLSFRSLNEKKSFIVTVTGKG 294 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~-~t-----Y~~~v~~~~g~~---v~v~P~~l~~~~~g~~~~~~Vt~~~~~ 294 (333)
...++..+++|..+.. .+ ...+++. .|+. +......+++ +++++.++++++....
T Consensus 15 ~d~~v~v~~~N~~~~~l~~v~~~l~~~~v~y-tG~~~~~~~~~~~~~~l-~p~~~~~~~~~i~p~~ 78 (107)
T PF00927_consen 15 QDFTVSVSFTNPSSEPLRNVSLNLCAFTVEY-TGLTRDQFKKEKFEVTL-KPGETKSVEVTITPSQ 78 (107)
T ss_dssp SEEEEEEEEEE-SSS-EECEEEEEEEEEEEC-TTTEEEEEEEEEEEEEE--TTEEEEEEEEE-HHS
T ss_pred CCEEEEEEEEeCCcCccccceeEEEEEEEEE-CCcccccEeEEEcceee-CCCCEEEEEEEEEcee
Confidence 5688889999998876 44 2223333 3553 4445555677 8999999999998865
No 98
>PF11611 DUF4352: Domain of unknown function (DUF4352); InterPro: IPR021652 This entry is represented by Bacteriophage A118, Gp32. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a group of putative lipoproteins of unknown function.; PDB: 3CFU_A.
Probab=30.63 E-value=1.7e+02 Score=23.10 Aligned_cols=56 Identities=9% Similarity=-0.110 Sum_probs=27.6
Q ss_pred eeEEEEEEEEeccCCCeeEE---EEEecCCceEEEEEc---------CeEEEeeCCcEEEEEEEEEeec
Q 044126 238 FTIKFPRTVTNIGLPNSTYK---AGILQNSKISVNVVP---------EVLSFRSLNEKKSFIVTVTGKG 294 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~---~~v~~~~g~~v~v~P---------~~l~~~~~g~~~~~~Vt~~~~~ 294 (333)
.-..+..+|+|.|+.+..+. +.+....|-...... ..-++ .+|++.+..+.|.++.
T Consensus 36 ~fv~v~v~v~N~~~~~~~~~~~~f~l~d~~g~~~~~~~~~~~~~~~~~~~~i-~pG~~~~g~l~F~vp~ 103 (123)
T PF11611_consen 36 KFVVVDVTVKNNGDEPLDFSPSDFKLYDSDGNKYDPDFSASSNDNDLFSETI-KPGESVTGKLVFEVPK 103 (123)
T ss_dssp EEEEEEEEEEE-SSS-EEEEGGGEEEE-TT--B--EEE-CCCTTTB--EEEE--TT-EEEEEEEEEEST
T ss_pred EEEEEEEEEEECCCCcEEecccceEEEeCCCCEEcccccchhccccccccEE-CCCCEEEEEEEEEECC
Confidence 45778889999998755432 122222222222111 12344 6788888888888765
No 99
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=30.22 E-value=79 Score=20.85 Aligned_cols=25 Identities=16% Similarity=0.291 Sum_probs=21.2
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHhcC
Q 044126 124 VAAYVKSFHPDWSPSAIKSAIMTTA 148 (333)
Q Consensus 124 ~aALl~~~~p~~sp~~ik~~L~~tA 148 (333)
.+..|++.+|+++...|+..|...-
T Consensus 5 ~v~~L~~mFP~l~~~~I~~~L~~~~ 29 (43)
T smart00546 5 ALHDLKDMFPNLDEEVIKAVLEANN 29 (43)
T ss_pred HHHHHHHHCCCCCHHHHHHHHHHcC
Confidence 4567899999999999999998653
No 100
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=29.84 E-value=1.3e+02 Score=22.20 Aligned_cols=30 Identities=23% Similarity=0.270 Sum_probs=19.2
Q ss_pred eeEEEEEEEEeccCCCeeEEEEEe--cCCceEE
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAGIL--QNSKISV 268 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~v~--~~~g~~v 268 (333)
...+++.+|+|.|+.... .+.+. .|+|+++
T Consensus 41 d~v~ytitvtN~G~~~a~-nv~v~D~lp~g~~~ 72 (76)
T PF01345_consen 41 DTVTYTITVTNTGPAPAT-NVVVTDTLPAGLTF 72 (76)
T ss_pred CEEEEEEEEEECCCCeeE-eEEEEEcCCCCCEE
Confidence 578899999999976532 23333 3555543
No 101
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.76 E-value=51 Score=28.45 Aligned_cols=33 Identities=15% Similarity=0.011 Sum_probs=26.9
Q ss_pred eEEeCCccchHHHHHHHHHHHHhhCCCCCHHHHH
Q 044126 108 YNIISGTSMACPHAAGVAAYVKSFHPDWSPSAIK 141 (333)
Q Consensus 108 y~~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik 141 (333)
-..+.|=|= |++|.|.+|++...+-..+|++|.
T Consensus 71 ~~~F~gdSd-A~ivrGL~aill~~~~G~t~~eI~ 103 (144)
T COG2166 71 TLHFFGDSD-ARIVRGLLAILLAAYSGKTAAEIL 103 (144)
T ss_pred eEEEeccch-hHHHHHHHHHHHHHHcCCCHHHHH
Confidence 344555554 789999999999999999999984
No 102
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=29.24 E-value=4.3e+02 Score=24.18 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=38.3
Q ss_pred eeEEEEEEEEeccCCCeeEEEEEecC------CceEEEEEcCeEEEeeCCcEEEEEEEEEeecCCCC
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAGILQN------SKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASG 298 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~v~~~------~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~ 298 (333)
+....+.+|+|.++.+..-+.-++.. ....+.++|.-+++ .+|+++.++|.......+.+
T Consensus 36 ~~~~~sl~l~N~~~~p~lvQsWv~~~~~~~~~~~~pfivtPPl~rl-~p~~~q~lRI~~~~~~lP~D 101 (227)
T PRK15299 36 DAKDASISISNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRL-NGGQKNVLRIIRTGGNLPED 101 (227)
T ss_pred CCcEEEEEEEeCCCCcEEEEEEeecCCCCCCcCCCCEEEcCCeEEE-CCCCccEEEEEECCCCCCCc
Confidence 35667788899876533223223221 12347789999999 78999999987665433433
No 103
>PRK13204 ureB urease subunit beta; Reviewed
Probab=28.78 E-value=96 Score=27.06 Aligned_cols=50 Identities=14% Similarity=0.172 Sum_probs=30.6
Q ss_pred eeEEEEEEEEeccCCCe----eEEEEEe---------cCCceEEEEEcC--eEEEeeCCcEEEEEEE
Q 044126 238 FTIKFPRTVTNIGLPNS----TYKAGIL---------QNSKISVNVVPE--VLSFRSLNEKKSFIVT 289 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~----tY~~~v~---------~~~g~~v~v~P~--~l~~~~~g~~~~~~Vt 289 (333)
+..+++.+|+|+|+.+. -|++-=. ..-|..+.+ |+ .+.| .+|+++++++.
T Consensus 41 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdI-PAGTAVRF-EPG~~k~V~LV 105 (159)
T PRK13204 41 GRPRTTLTVRNTGDRPIQIGSHFHFFEVNRYLEFDRSKAFGLRLDI-PANTAVRF-EPGDEKEVTLV 105 (159)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCccccc-CCCCeEeE-CCCCeeEEEEE
Confidence 45678899999998654 2332110 112445554 43 4677 78999988764
No 104
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=28.61 E-value=61 Score=27.04 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=25.7
Q ss_pred EeCCccchHHHHHHHHHHHHhhCCCCCHHHHHH
Q 044126 110 IISGTSMACPHAAGVAAYVKSFHPDWSPSAIKS 142 (333)
Q Consensus 110 ~~sGTSmAaP~VAG~aALl~~~~p~~sp~~ik~ 142 (333)
.+.|.|= |++|-|++||+...+-..+|++|.+
T Consensus 59 ~f~adSd-a~ivkGl~all~~~~~g~t~~eI~~ 90 (125)
T PF02657_consen 59 HFRADSD-ARIVKGLLALLLEVLNGQTPEEILA 90 (125)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHTTT-BHHHHHH
T ss_pred EEEecCc-cHHHHHHHHHHHHHHcCCCHHHHHh
Confidence 4556665 6799999999999999999999854
No 105
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=28.01 E-value=4.7e+02 Score=23.94 Aligned_cols=56 Identities=16% Similarity=0.113 Sum_probs=37.7
Q ss_pred eeEEEEEEEEeccCCCeeEEEE--EecCC-----ceEEEEEcCeEEEeeCCcEEEEEEEEEeecCC
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAG--ILQNS-----KISVNVVPEVLSFRSLNEKKSFIVTVTGKGLA 296 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~--v~~~~-----g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~ 296 (333)
+....+.+|+|.++.+ |-+- ++... ...+.++|..+++ .+|+.+.++|.......+
T Consensus 33 ~~~~~si~i~N~~~~p--~LvQsWv~~~~~~~~~~~pFivtPPl~rl-~p~~~q~lRI~~~~~~LP 95 (226)
T PRK15295 33 NNDESSINVENKDSKA--NLVQSWLSVVDPQVTNKQAFIITPPLFRL-DAGQKNSIRVIRSGAPLP 95 (226)
T ss_pred CCceeEEEEEeCCCCc--EEEEEEEeCCCCCCCCCCCEEEcCCeEEE-CCCCceEEEEEECCCCCC
Confidence 4566778889988653 4433 32211 2347789999999 789999999887654333
No 106
>PRK15211 fimbrial chaperone protein PefD; Provisional
Probab=27.99 E-value=4.8e+02 Score=24.03 Aligned_cols=60 Identities=15% Similarity=0.056 Sum_probs=38.8
Q ss_pred eeEEEEEEEEeccCCCeeEEEEEecCC--c--eEEEEEcCeEEEeeCCcEEEEEEEEEeecCCCC
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAGILQNS--K--ISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASG 298 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~v~~~~--g--~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~ 298 (333)
.....+.+|+|.++.+---++.++... + .-+.|+|.-+++ .+++.+.++|.......+.+
T Consensus 36 ~~~~~si~i~N~~~~p~LvQswv~~~~~~~~~~pFivtPPlfrl-~p~~~q~lRI~~~~~~LP~D 99 (229)
T PRK15211 36 GRKNISFEVTNQADQTYGGQVWIDNTTQGSSTVYMVPAPPFFKV-RPKEKQIIRIMKTDSALPKD 99 (229)
T ss_pred CCceEEEEEEeCCCCcEEEEEEEecCCCCCccCCEEEcCCeEEE-CCCCceEEEEEECCCCCCCC
Confidence 345677888998865422223333211 1 347789999999 78999999998765433433
No 107
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=27.73 E-value=4.4e+02 Score=24.43 Aligned_cols=60 Identities=10% Similarity=0.068 Sum_probs=39.3
Q ss_pred eeEEEEEEEEeccCCCeeEEEEEecCC------c--eEEEEEcCeEEEeeCCcEEEEEEEEEee-cCCCC
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAGILQNS------K--ISVNVVPEVLSFRSLNEKKSFIVTVTGK-GLASG 298 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~v~~~~------g--~~v~v~P~~l~~~~~g~~~~~~Vt~~~~-~~~~~ 298 (333)
+....+.+|+|.++.+.-.+.-++... . ..+.|+|.-+++ .+++.+.++|..... ..+.+
T Consensus 39 ~~~~~sv~l~N~~~~p~LvQ~Wvd~~~~~~~p~~~~~pfivtPPl~rl-~p~~~q~lRIi~~~~~~lP~D 107 (246)
T PRK09926 39 DQKDVNVRLENKGNNPLLVQSWLDTGDDNAEPGSIKVPFTATPPVSRI-DPKRGQTIKLMYTASTALPKD 107 (246)
T ss_pred CCceEEEEEEeCCCCcEEEEEEecCCCCccCccccCCCEEEcCCeEEE-CCCCccEEEEEeCCCCCCCCC
Confidence 356677888998875433333333211 1 237789999999 789999999887654 33433
No 108
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=26.61 E-value=5.1e+02 Score=23.88 Aligned_cols=60 Identities=7% Similarity=0.079 Sum_probs=38.6
Q ss_pred eeEEEEEEEEeccCC-CeeEEEEEecCCc---eEEEEEcCeEEEeeCCcEEEEEEEEEeecCCCC
Q 044126 238 FTIKFPRTVTNIGLP-NSTYKAGILQNSK---ISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASG 298 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~-~~tY~~~v~~~~g---~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~ 298 (333)
+....+.+++|.++. .--.+.-++...+ ..+.++|.-+++ .+++.+.++|.......+.+
T Consensus 41 ~~~~~sv~i~N~~~~~p~LvQsWv~~~~~~~~~pFivtPPlfrl-~~~~~~~lRI~~~~~~lP~D 104 (228)
T PRK15188 41 GSKQTSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVI-QPKKENILRIMYVGPSLPTD 104 (228)
T ss_pred CCceEEEEEEeCCCCccEEEEEEEecCCCCccCCEEEcCCeEEE-CCCCceEEEEEECCCCCCCC
Confidence 456677888898753 2222223333222 247789999999 88999999998775444433
No 109
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=25.48 E-value=4.1e+02 Score=24.48 Aligned_cols=60 Identities=17% Similarity=0.181 Sum_probs=38.6
Q ss_pred eeEEEEEEEEeccCCCeeEEEEEecCC------c--eEEEEEcCeEEEeeCCcEEEEEEEEEeecCCCC
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAGILQNS------K--ISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASG 298 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~v~~~~------g--~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~ 298 (333)
+....+.+|+|.++.+---+.-++... . .-+.|+|..+++ .+++.+.++|.......+.+
T Consensus 32 ~~~~~si~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl-~p~~~~~lRI~~~~~~LP~D 99 (226)
T PRK15218 32 QKKDITVQLMNDGKRSSLIQAWIDNGDTSLPPEKLQVPFIMTPPVIRV-AANSGQQLKIKKLANNLPGD 99 (226)
T ss_pred CCcEEEEEEEcCCCCcEEEEEEEeCCCCCCCcccccCCEEECCCeEEE-CCCCceEEEEEECCCCCCcc
Confidence 456677888998865322222233211 1 247789999999 78999999998765444433
No 110
>PRK13198 ureB urease subunit beta; Reviewed
Probab=24.54 E-value=1.3e+02 Score=26.28 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=30.4
Q ss_pred eeEEEEEEEEeccCCCe----eEEEEEe---------cCCceEEEEEcC--eEEEeeCCcEEEEEEE
Q 044126 238 FTIKFPRTVTNIGLPNS----TYKAGIL---------QNSKISVNVVPE--VLSFRSLNEKKSFIVT 289 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~----tY~~~v~---------~~~g~~v~v~P~--~l~~~~~g~~~~~~Vt 289 (333)
+..+++.+|+|+|+.+. -|++-=. ..-|..+.+ |+ .+.| .+|+++++++.
T Consensus 46 gr~~~~l~V~NtGDRPIQVGSHyHF~EvN~aL~FDR~~A~G~RLdI-PAGTAVRF-EPG~~k~V~LV 110 (158)
T PRK13198 46 NKPVTKVKVRNTGDRPIQVGSHFHFFEVNRALEFDRAAAYGKRLNI-SSTTAIRF-EPGDETEVPLI 110 (158)
T ss_pred CCcEEEEEEEeCCCCceEeccccchhhcCccccccHhhhcCccccc-CCCCeEee-CCCCeeEEEEE
Confidence 45678889999998654 2332100 112445544 43 3677 78999988764
No 111
>COG4856 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.25 E-value=2.9e+02 Score=27.70 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=35.2
Q ss_pred EEEEEEEEeccCCCeeEEEEEec-CCceEEEEEcCeEEEe-eCCcEEEEEEEEEee
Q 044126 240 IKFPRTVTNIGLPNSTYKAGILQ-NSKISVNVVPEVLSFR-SLNEKKSFIVTVTGK 293 (333)
Q Consensus 240 ~t~~rtvtNvg~~~~tY~~~v~~-~~g~~v~v~P~~l~~~-~~g~~~~~~Vt~~~~ 293 (333)
.++.--++|.+.+...-.+.++. |.|+.+++.|...++. ...+++.|.|+++..
T Consensus 92 FkV~ADLt~a~~Gt~evkl~ve~l~~~ltvsV~P~~~~Vti~kk~tkk~~V~vei~ 147 (403)
T COG4856 92 FKVVADLTHAGVGTHEVKLQVEGLPDGLTVSVNPEKATVTIEKKVTKKFPVSVEID 147 (403)
T ss_pred eEEEEEhhhcCCCceEeeeEeecCCCCceEEEccceeEEEEeeeeEEEEeeeEEEc
Confidence 45555678877654444444443 7899999999976554 344566777777664
No 112
>PRK13192 bifunctional urease subunit gamma/beta; Reviewed
Probab=22.39 E-value=1.2e+02 Score=27.59 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=30.5
Q ss_pred eeEEEEEEEEeccCCCe----eEEEEEec---------CCceEEEEEcC--eEEEeeCCcEEEEEEE
Q 044126 238 FTIKFPRTVTNIGLPNS----TYKAGILQ---------NSKISVNVVPE--VLSFRSLNEKKSFIVT 289 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~----tY~~~v~~---------~~g~~v~v~P~--~l~~~~~g~~~~~~Vt 289 (333)
+..+++.+|+|+|+.+. .|++-=.- .-|..+.+ |+ .+.| .+|+++++++.
T Consensus 127 gr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdI-pAGTavRF-EPG~~k~V~LV 191 (208)
T PRK13192 127 GRPAVTLDVTNTGDRPIQVGSHFHFFEVNRALRFDRAAAYGMRLDI-PAGTAVRF-EPGETKEVRLV 191 (208)
T ss_pred CCCEEEEEEEeCCCCceeeccccchhhcCchhhccHHHhcCccccc-CCCCeEeE-CCCCeeEEEEE
Confidence 45678899999998653 23331100 12444544 43 4677 77999988763
No 113
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=21.94 E-value=93 Score=30.99 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=30.8
Q ss_pred eeEEEEEEEEeccCCCee----EEEEEec-------------CC-----ceEEEEEcCeEEEeeCCcEEEEEEEEEe
Q 044126 238 FTIKFPRTVTNIGLPNST----YKAGILQ-------------NS-----KISVNVVPEVLSFRSLNEKKSFIVTVTG 292 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~t----Y~~~v~~-------------~~-----g~~v~v~P~~l~~~~~g~~~~~~Vt~~~ 292 (333)
+..+++.+|||.|++... .++.+.. |. |++ |++++ -+ .+||+++++|+++-
T Consensus 282 R~l~~~~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~--v~d~~-pI-~PGETr~v~v~aqd 354 (399)
T TIGR03079 282 RALRVTMEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLE--VDDQS-AI-APGETVEVKMEAKD 354 (399)
T ss_pred cEEEEEEEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccce--eCCCC-Cc-CCCcceEEEEEEeh
Confidence 567788889999986432 1222221 21 333 33332 23 78999999988874
No 114
>COG1361 S-layer domain [Cell envelope biogenesis, outer membrane]
Probab=21.39 E-value=8.7e+02 Score=24.66 Aligned_cols=79 Identities=14% Similarity=0.096 Sum_probs=45.6
Q ss_pred eEEEEEEEEeccCCC-eeEEEEEecCCceEEEEEcC----eEEEeeCCcEEEEEEEEEeecCCCCCeEEEE--EEEEcCC
Q 044126 239 TIKFPRTVTNIGLPN-STYKAGILQNSKISVNVVPE----VLSFRSLNEKKSFIVTVTGKGLASGSIVSAA--LVWFDGS 311 (333)
Q Consensus 239 ~~t~~rtvtNvg~~~-~tY~~~v~~~~g~~v~v~P~----~l~~~~~g~~~~~~Vt~~~~~~~~~~~~~G~--i~~~~~~ 311 (333)
..+++.+++|.|... ....+..+.|......+... .+.+..+++++.+++++.+........+... |.|.|..
T Consensus 168 ~~~l~~~I~N~G~~~~~~v~l~~~~~~~~~~~i~~~~~~~~i~~l~p~es~~v~f~v~~~~~a~~g~y~i~i~i~~~~~~ 247 (500)
T COG1361 168 TNTLTLTIKNPGEGPAKNVSLSLESPTSYLGPIYSANDTPYIGALGPGESVNVTFSVYAGSNAEPGTYTINLEITYKDEE 247 (500)
T ss_pred ccEEEEEEEeCCcccccceEEEEeCCcceeccccccccceeeeeeCCCceEEEEEEEEeecCCCCccEEEEEEEEEecCC
Confidence 447889999999743 33444444333222222222 2455588999999888888643333444444 4566655
Q ss_pred ceEEee
Q 044126 312 RIVRSP 317 (333)
Q Consensus 312 ~~vr~P 317 (333)
+..+.+
T Consensus 248 ~~~~~~ 253 (500)
T COG1361 248 GSVKSP 253 (500)
T ss_pred cccccc
Confidence 555555
No 115
>PRK15224 pili assembly chaperone protein SafB; Provisional
Probab=21.00 E-value=6.8e+02 Score=23.26 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=38.8
Q ss_pred eeEEEEEEEEeccCCCeeEEEE--EecCCc---eEEEEEcCeEEEeeCCcEEEEEEEEEeecCCCC
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAG--ILQNSK---ISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASG 298 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~--v~~~~g---~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~ 298 (333)
+....+.+|+|.++.. |-+- ++...+ .-+.|.|.-+++ .+++...++|.......+.+
T Consensus 42 ~~k~~sl~v~N~~~~p--yLvQsWvd~~~~~~~~pFivtPPlfRl-ep~~~~~lRI~~~~~~LP~D 104 (237)
T PRK15224 42 GTAGATLSVSNPQNYP--ILVQSSVKAADKSSPAPFLVMPPLFRL-EANQQSQLRIVRTGGDMPTD 104 (237)
T ss_pred CCcEEEEEEEcCCCCc--EEEEEEEeCCCCCccCCEEECCCeEEE-CCCCceEEEEEECCCCCCCc
Confidence 4566778889987643 4432 332221 237789999999 78999999998875444444
No 116
>COG0065 LeuC 3-isopropylmalate dehydratase large subunit [Amino acid transport and metabolism]
Probab=20.51 E-value=93 Score=31.34 Aligned_cols=60 Identities=20% Similarity=0.120 Sum_probs=42.8
Q ss_pred CCCeeecccCCCCCCCCCCCcCCcEEeCCCceeeccCCCCCCCcCcccccceeeE-EeCCccchHHHHHHHHHHH
Q 044126 55 DAPIVASFSSRGPNKYVPDILKPDISAPGVNILAAYSPLAPVSRDIEDERHVKYN-IISGTSMACPHAAGVAAYV 128 (333)
Q Consensus 55 ~~~~va~fSs~Gp~~~~~~~lKPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~-~~sGTSmAaP~VAG~aALl 128 (333)
.++..-.....||+. -.-||+.+||+.+.|+...+...- -. ..+=|=.++|-+|.++|+-
T Consensus 353 ~AG~~~~~pgCg~CL----g~~~gvL~~gE~c~STSNRNF~GR----------qG~~~a~~~L~SPA~AAAaAv~ 413 (423)
T COG0065 353 EAGFEWREPGCGPCL----GMHPGVLGPGERCASTSNRNFEGR----------QGSPGARTYLASPAMAAAAAVE 413 (423)
T ss_pred hcCcEEcCCCCcccc----ccCCCcCCCCCEEeeccCCCCCcc----------CCCCCCeEEecCHHHHHHHHhh
Confidence 577777788889986 356799999999999977653211 11 2223447899999999875
No 117
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.45 E-value=6.4e+02 Score=23.22 Aligned_cols=60 Identities=17% Similarity=0.172 Sum_probs=44.6
Q ss_pred eeEEEEEEEEeccCCCeeEEEEEec--C---CceEEEEEcCeEEEeeCCcEEEEEEEEEeecCCCC
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAGILQ--N---SKISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASG 298 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~v~~--~---~g~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~ 298 (333)
+.+....+|+|.++.....++-++. + ....+.++|..+.+ .+|+.+.++|-......+.+
T Consensus 41 ~~k~~sl~l~N~~~~p~LvQ~wvd~~~~~~~~~~pfvvtPPv~rl-~p~~~q~vRi~~~~~~lP~d 105 (235)
T COG3121 41 GDKETSLTLRNDGNQPYLVQSWVDDGLEPEKSTVPFVVTPPVFRL-EPGQEQQLRILYTGNKLPAD 105 (235)
T ss_pred CCceeEEEEEcCCCCCEEEEEEEcCCCCCccccCCEEecCCeEEE-CCCCccEEEEEecCCCCCCC
Confidence 4566778899977777777777773 2 24567789999999 88999999998887543433
No 118
>PRK15253 putative fimbrial assembly chaperone protein StcB; Provisional
Probab=20.40 E-value=5.7e+02 Score=23.81 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=38.2
Q ss_pred eeEEEEEEEEeccCCCeeEEEEEecCC------c--eEEEEEcCeEEEeeCCcEEEEEEEEEeecCCCC
Q 044126 238 FTIKFPRTVTNIGLPNSTYKAGILQNS------K--ISVNVVPEVLSFRSLNEKKSFIVTVTGKGLASG 298 (333)
Q Consensus 238 ~~~t~~rtvtNvg~~~~tY~~~v~~~~------g--~~v~v~P~~l~~~~~g~~~~~~Vt~~~~~~~~~ 298 (333)
+....+.+|+|.++.+---++-++... . .-+.|+|.-+.+ .+++.+.++|.......+.+
T Consensus 47 ~~k~~sv~i~N~~~~pyLvQsWvd~~~~~~~~~~~~~pFivtPPlfRl-~p~~~~~lRI~~~~~~LP~D 114 (242)
T PRK15253 47 EKKEVVVQLVNQGEQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARV-AAESGQQIKIKKMPNSLPDN 114 (242)
T ss_pred CCceEEEEEEcCCCCcEEEEEEEECCCCCCCcccccCCEEECCCeEEE-CCCCceEEEEEECCCCCCcc
Confidence 345667788898865322223333211 1 247789999999 78999999998665444433
Done!