BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044130
(565 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B2G|A Chain A, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
pdb|4B2G|B Chain B, Crystal Structure Of An Indole-3-acetic Acid Amido
Synthase From Vitis Vinifera Involved In Auxin
Homeostasis
Length = 609
Score = 585 bits (1509), Expect = e-167, Method: Compositional matrix adjust.
Identities = 309/603 (51%), Positives = 395/603 (65%), Gaps = 61/603 (10%)
Query: 4 GKKLEYKGEEALKEIEKLTAKADEVQNNLLREILIRNGETEYLRKY-LRGSKDVSDFKRC 62
G K +AL+ IE++T AD VQ +L EIL RNGETEYL+++ L GS FK
Sbjct: 12 GPAASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSK 71
Query: 63 VPVSTYKNIYPYIQRIAISGEDSSLISGHPITEMLCR----------------------- 99
+PV Y+++ P IQRIA +G+ S+++S HPI+E L
Sbjct: 72 IPVIKYEDLQPEIQRIA-NGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQM 130
Query: 100 -----------YICGLDEGKAMYFYFVKAEMSTPSGLPTRTVLTSYYKSKHFKCRTRDPY 148
Y+ GLD+GK +YF FVK+E TP GL R VLTSYYKS+HFK R DPY
Sbjct: 131 LYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVLTSYYKSEHFKTRPYDPY 190
Query: 149 NDFTSPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCN 208
N +TSP+ AILC DS QSMY Q+L G+ R QVLRLGAVFAS LLRAI FL+ NW QL +
Sbjct: 191 NVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTH 250
Query: 209 DIRSGRLDLTITDPGCRXXXXXXXXXXXXXXADEIEEICSRPSWKGILCQLWPRAKYIEA 268
DIR+G L ITDP R AD + CS+ +W+GI+ ++WP KY++
Sbjct: 251 DIRTGTLSPKITDPSVR-NCVAGVLKPDPELADLVAGECSKDNWEGIITRIWPNTKYLDV 309
Query: 269 VVTGSMAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFE 328
+VTG+MAQYIP+L+YYS G LPL TMYASSECYFG+NL P+S P++VS+T++PNM YFE
Sbjct: 310 IVTGAMAQYIPTLDYYSGG-LPLACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFE 368
Query: 329 FLPLGGENGTLLSMEFNEEEEVP-----NDKLVDLGHVRVGHYYELVVTTFAGLNRYRIG 383
FLP +E +P +LVDL HV VG YELV+TT+AGL RYR+G
Sbjct: 369 FLP-------------HEHSSIPLSRDSPPRLVDLAHVEVGKEYELVITTYAGLYRYRVG 415
Query: 384 DVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTS 443
D+L+VTGF+N APQF F+ R+NV+LSID+DKT+E +L K+V A LL + +VEYTS
Sbjct: 416 DILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTS 475
Query: 444 YADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGP 503
+ADT T+PGHYV+YWE+ + DS P D ++L +CC+A+EE L+ VYR+ R D S+GP
Sbjct: 476 FADTKTIPGHYVIYWELLVKDSANSPSD--ELLGQCCLAMEESLNSVYRQGRVADNSIGP 533
Query: 504 LEIRVVEPGTFETLMDLLVSQGGSINQYKTPRCIKSNNAALM-LLDSHVKDSFFSPRDPK 562
LEIRVV+ GTFE LMD +S+G SINQYK PRC+ N +M LLDS V S FSP P
Sbjct: 534 LEIRVVKSGTFEELMDYAISRGASINQYKVPRCV--NFTPIMELLDSRVVSSHFSPALPH 591
Query: 563 WIP 565
W P
Sbjct: 592 WTP 594
>pdb|4EWV|A Chain A, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EWV|B Chain B, Crystal Structure Of Gh3.12 In Complex With Ampcpp
pdb|4EPM|A Chain A, Crystal Structure Of Arabidopsis Gh3.12 (Pbs3) In Complex
With Amp
pdb|4EQL|A Chain A, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
pdb|4EQL|B Chain B, Crystal Structure Of Gh3.12 In Complex With Amp And
Salicylate
Length = 581
Score = 520 bits (1340), Expect = e-148, Method: Compositional matrix adjust.
Identities = 271/581 (46%), Positives = 365/581 (62%), Gaps = 58/581 (9%)
Query: 16 KEIEKLTAKADEVQNNLLREILIRNGETEYLRKYLRGSKDVSDFKRCVPVSTYKNIYPYI 75
K+++ LT+ +Q+NLL EI+ N +TEYL+++L D FK+ VP+ +Y++I PY+
Sbjct: 19 KQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFLIDRFDKELFKKNVPIVSYEDIKPYL 78
Query: 76 QRIAISGEDSSLISGHPIT----------------------------------EMLCRYI 101
R+ ++GE S +IS IT +++ +++
Sbjct: 79 DRV-VNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITKHV 137
Query: 102 CGLDEGKAMYFYFVKAEMSTPSGLPTRTVLTSYYKSKHFKCRTRDPYNDFTSPDPAILCN 161
G++EGK M F F K E TPSGLP R +SY+KS +FK R + Y +TSPD ILC
Sbjct: 138 KGVEEGKGMMFLFTKQESMTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCP 197
Query: 162 DSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCNDIRSGRLDLTITD 221
++ +S+YC LL GL+ R +V+R G++FAS ++RAI L+ +W +LC++IRSG L +TD
Sbjct: 198 NNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIRSGHLSNWVTD 257
Query: 222 PGCRXXXXXXXXXXXXXXADEIEEICSRPSWKGILCQLWPRAKYIEAVVTGSMAQYIPSL 281
GC+ AD IEEIC++ SWKGI+ +LWP KYIE VVTGSM QY+P L
Sbjct: 258 LGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPML 317
Query: 282 EYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGGENGTLLS 341
YY LPLV T Y SSE FG+NL PL P DVS+T +PNM YFEF+P+ G +
Sbjct: 318 NYY-CNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGD----- 371
Query: 342 MEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFRFI 401
+ +VDL V++G YE VVT FAGL R R+GD++ VTGFYN APQF+F+
Sbjct: 372 ----------KNDVVDLEDVKLGCTYEPVVTNFAGLYRMRVGDIVLVTGFYNNAPQFKFV 421
Query: 402 CRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVPGHYVLYWEIQ 461
R NVVLSID+DKTNEEDL K+V+ AK +LE L ++TSYADTST PGHYV+Y E+
Sbjct: 422 RRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVD 481
Query: 462 I-----VDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGPLEIRVVEPGTFET 516
++ LD ++ L CC+ +EE LD VY+RCR D S+GPLEIRVV GTF++
Sbjct: 482 TKEGEEKETAQFELD-EEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDS 540
Query: 517 LMDLLVSQGGSINQYKTPRCIKSNNAALMLLDSHVKDSFFS 557
LMD +SQG S QYKTPRCIKS AL +L++ V FFS
Sbjct: 541 LMDFFISQGASTGQYKTPRCIKSGK-ALQVLETCVVAKFFS 580
>pdb|4EQ4|A Chain A, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
pdb|4EQ4|B Chain B, Crystal Structure Of Seleno-Methionine Derivatized Gh3.12
Length = 581
Score = 504 bits (1299), Expect = e-143, Method: Compositional matrix adjust.
Identities = 267/581 (45%), Positives = 357/581 (61%), Gaps = 58/581 (9%)
Query: 16 KEIEKLTAKADEVQNNLLREILIRNGETEYLRKYLRGSKDVSDFKRCVPVSTYKNIYPYI 75
K+++ LT+ +Q+NLL EI+ N +TEYL+++L D FK+ VP+ +Y++I PY+
Sbjct: 19 KQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFLIDRFDKELFKKNVPIVSYEDIKPYL 78
Query: 76 QRIAISGEDSSLISGHPIT----------------------------------EMLCRYI 101
R+ ++GE S +IS IT +++ +++
Sbjct: 79 DRV-VNGESSDVISARTITGFLLSSGTSGGAQKXXPWNNKYLDNLTFIYDLRXQVITKHV 137
Query: 102 CGLDEGKAMYFYFVKAEMSTPSGLPTRTVLTSYYKSKHFKCRTRDPYNDFTSPDPAILCN 161
G++EGK F F K E TPSGLP R +SY+KS +FK R + Y +TSPD ILC
Sbjct: 138 KGVEEGKGXXFLFTKQESXTPSGLPARVATSSYFKSDYFKNRPSNWYYSYTSPDEVILCP 197
Query: 162 DSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCNDIRSGRLDLTITD 221
++ +S+YC LL GL+ R +V+R G++FAS +RAI L+ +W +LC++IRSG L +TD
Sbjct: 198 NNTESLYCHLLCGLVQRDEVVRTGSIFASVXVRAIEVLKNSWEELCSNIRSGHLSNWVTD 257
Query: 222 PGCRXXXXXXXXXXXXXXADEIEEICSRPSWKGILCQLWPRAKYIEAVVTGSMAQYIPSL 281
GC+ AD IEEIC++ SWKGI+ +LWP KYIE VVTGS QY+P L
Sbjct: 258 LGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSXGQYVPXL 317
Query: 282 EYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGGENGTLLS 341
YY LPLV T Y SSE FG+NL PL P DVS+T PN YFEF+P G +
Sbjct: 318 NYY-CNDLPLVSTTYGSSETTFGINLDPLCKPEDVSYTFXPNXSYFEFIPXDGGD----- 371
Query: 342 MEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTFAGLNRYRIGDVLQVTGFYNRAPQFRFI 401
+ +VDL V++G YE VVT FAGL R R+GD++ VTGFYN APQF+F+
Sbjct: 372 ----------KNDVVDLEDVKLGCTYEPVVTNFAGLYRXRVGDIVLVTGFYNNAPQFKFV 421
Query: 402 CRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVPGHYVLYWEIQ 461
R NVVLSID+DKTNEEDL K+V+ AK +LE L ++TSYADTST PGHYV+Y E+
Sbjct: 422 RRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPGHYVVYLEVD 481
Query: 462 I-----VDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGPLEIRVVEPGTFET 516
++ LD ++ L CC+ EE LD VY+RCR D S+GPLEIRVV GTF++
Sbjct: 482 TKEGEEKETAQFELD-EEALSTCCLVXEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDS 540
Query: 517 LMDLLVSQGGSINQYKTPRCIKSNNAALMLLDSHVKDSFFS 557
L D +SQG S QYKTPRCIKS AL +L++ V FFS
Sbjct: 541 LXDFFISQGASTGQYKTPRCIKS-GKALQVLETCVVAKFFS 580
>pdb|4EPL|A Chain A, Crystal Structure Of Arabidopsis Thaliana Gh3.11 (Jar1) In
Complex With Ja-Ile
Length = 581
Score = 339 bits (869), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 211/603 (34%), Positives = 315/603 (52%), Gaps = 74/603 (12%)
Query: 2 HYGKKLE----YKGEEALKEIEKLTAKADEVQNNLLREILIRNGETEYLRK-YLRGSKDV 56
H + LE + + E +++T A +VQ L+EIL++N YL+ L G+
Sbjct: 3 HMARMLEKVETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATD 62
Query: 57 SD--FKRCVPVSTYKNIYPYIQRIAISGEDSSLISGHPI-------------------TE 95
+ FK VP+ T + PYI+R+ + G+ S +++GHP+ T+
Sbjct: 63 PEEAFKSMVPLVTDVELEPYIKRM-VDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTD 121
Query: 96 MLCRYICGL---------------DEGKAMYFYFVKAEMSTPSGLPTRTVLTSYYKSKHF 140
L L D GKA+ F F + + G+P T T+ Y++ +F
Sbjct: 122 ELMENTLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGTATTNVYRNPNF 181
Query: 141 KCRTRDPYNDFTSPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLE 200
K + + SPD I D +Q++YC LL+G++ R QV + AVFA L+ A E
Sbjct: 182 KAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFE 241
Query: 201 RNWFQLCNDIRSGRLDLTITDPGCRXXXXXXXXXXXXXXADEIEEIC-SRPSWKGILCQL 259
+ W ++ DI+ G L IT P R A+ I C S +W G++ L
Sbjct: 242 QVWEEIVTDIKDGVLSNRITVPSVRTAMSKLLTPNPEL-AETIRTKCMSLSNWYGLIPAL 300
Query: 260 WPRAKYIEAVVTGSMAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFT 319
+P AKY+ ++TGSM Y+P L +Y AG LPLV Y SSE + N+ P +P + +F
Sbjct: 301 FPNAKYVYGIMTGSMEPYVPKLRHY-AGDLPLVSHDYGSSEGWIAANVTPRLSPEEATFA 359
Query: 320 LLPNMCYFEFLPLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTFAGLNR 379
++PN+ YFEFLP+ E E EE P V L V++G YE+V+T +AGL R
Sbjct: 360 VIPNLGYFEFLPVS---------ETGEGEEKP----VGLTQVKIGEEYEVVITNYAGLYR 406
Query: 380 YRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLV 439
YR+GDV++V GFYN PQ +FICRRN++LSI+ DK E DL SV A L ++
Sbjct: 407 YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVI 466
Query: 440 EYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQ-LDYVY---RRCR 495
+++SY D ST PGHY ++WEI ++ VL++CC ++ +D Y R+C
Sbjct: 467 DFSSYIDVSTDPGHYAIFWEIS-------GETNEDVLQDCCNCLDRAFIDAGYVSSRKC- 518
Query: 496 SHDKSVGPLEIRVVEPGTFETLMDLLVSQGGSINQYKTPRCIKSNNA-ALMLLDSHVKDS 554
K++G LE+RVV GTF + + + G S Q+K PRC+K +NA L +L +V S
Sbjct: 519 ---KTIGALELRVVAKGTFRKIQEHFLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSS 575
Query: 555 FFS 557
+FS
Sbjct: 576 YFS 578
>pdb|3D7A|A Chain A, Crystal Structure Of Duf54 Family Protein Ph1010 From
Hyperthermophilic Archaea Pyrococcus Horikoshii Ot3
pdb|3D7A|B Chain B, Crystal Structure Of Duf54 Family Protein Ph1010 From
Hyperthermophilic Archaea Pyrococcus Horikoshii Ot3
Length = 138
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 454 YVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGP--LEIRVVEP 511
Y L+ QI+D+ + L+ EE I V +Q+ YV + + D +GP + IR EP
Sbjct: 61 YELFRGQQILDTARMMLEEGYFGEEIIIKVHKQVAYVGKVNFNEDSPLGPITITIRTKEP 120
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,341,015
Number of Sequences: 62578
Number of extensions: 724465
Number of successful extensions: 1507
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1480
Number of HSP's gapped (non-prelim): 9
length of query: 565
length of database: 14,973,337
effective HSP length: 104
effective length of query: 461
effective length of database: 8,465,225
effective search space: 3902468725
effective search space used: 3902468725
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)