Query 044130
Match_columns 565
No_of_seqs 136 out of 571
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 20:29:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044130.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044130hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b2g_A GH3-1 auxin conjugating 100.0 3E-128 9E-133 1069.8 44.1 545 7-565 15-594 (609)
2 4eql_A 4-substituted benzoates 100.0 4E-128 1E-132 1066.6 37.4 531 7-557 10-580 (581)
3 4epl_A Jasmonic acid-amido syn 100.0 8E-126 3E-130 1046.2 44.2 529 7-560 12-581 (581)
4 3qov_A Phenylacetate-coenzyme 99.4 2.6E-12 8.9E-17 137.2 18.2 199 266-516 208-421 (436)
5 2y4o_A Phenylacetate-coenzyme 99.4 1.5E-11 5.2E-16 131.5 19.1 204 260-516 211-427 (443)
6 2y27_A Phenylacetate-coenzyme 99.1 2.4E-10 8E-15 122.0 13.4 203 260-516 209-423 (437)
7 3etc_A AMP-binding protein; ad 98.6 9.1E-07 3.1E-11 98.1 16.6 131 260-426 340-496 (580)
8 3e7w_A D-alanine--poly(phospho 98.4 6.7E-06 2.3E-10 89.3 18.7 134 257-426 256-419 (511)
9 2v7b_A Benzoate-coenzyme A lig 98.4 4E-06 1.4E-10 91.3 16.0 128 266-426 302-450 (529)
10 2d1s_A Luciferase, luciferin 4 98.4 1E-06 3.5E-11 96.8 10.9 133 260-426 308-462 (548)
11 3ni2_A 4-coumarate:COA ligase; 98.4 3.6E-06 1.2E-10 92.0 15.2 133 260-426 296-455 (536)
12 1t5h_X 4-chlorobenzoyl COA lig 98.4 8.4E-06 2.9E-10 88.3 17.9 133 260-426 271-423 (504)
13 4fuq_A Malonyl COA synthetase; 98.4 1.3E-06 4.5E-11 94.8 11.5 133 259-426 266-420 (503)
14 3fce_A D-alanine--poly(phospho 98.3 5.1E-06 1.8E-10 90.1 14.9 132 259-426 259-420 (512)
15 3ivr_A Putative long-chain-fat 98.3 7E-07 2.4E-11 96.9 7.6 130 266-427 274-422 (509)
16 3rix_A Luciferase, luciferin 4 98.3 1.2E-06 4.2E-11 96.1 9.1 134 260-427 306-461 (550)
17 3nyq_A Malonyl-COA ligase; A/B 98.2 1.2E-05 4.2E-10 87.3 15.1 131 266-426 274-427 (505)
18 3l8c_A D-alanine--poly(phospho 98.2 3.4E-06 1.2E-10 91.7 10.3 132 260-426 263-424 (521)
19 1pg4_A Acetyl-COA synthetase; 98.2 3.1E-05 1.1E-09 87.0 18.2 228 266-551 380-645 (652)
20 3g7s_A Long-chain-fatty-acid-- 98.2 2E-06 6.9E-11 94.3 8.2 134 260-426 295-460 (549)
21 3c5e_A Acyl-coenzyme A synthet 98.2 5.2E-06 1.8E-10 91.8 10.7 131 260-426 321-477 (570)
22 3ite_A SIDN siderophore synthe 98.2 2E-06 6.7E-11 94.6 7.1 63 361-427 369-449 (562)
23 3o83_A Peptide arylation enzym 98.1 2.6E-06 8.9E-11 93.4 7.0 133 260-427 306-461 (544)
24 3rg2_A Enterobactin synthase c 98.1 9.1E-06 3.1E-10 90.5 11.4 133 259-426 300-455 (617)
25 1mdb_A 2,3-dihydroxybenzoate-A 98.1 4.2E-06 1.4E-10 91.6 8.6 131 260-426 297-451 (539)
26 1ry2_A Acetyl-coenzyme A synth 98.1 5.5E-05 1.9E-09 85.2 17.2 230 266-549 386-659 (663)
27 3kxw_A Saframycin MX1 syntheta 98.1 8.3E-06 2.9E-10 89.8 9.8 63 360-427 393-480 (590)
28 4gs5_A Acyl-COA synthetase (AM 98.0 6.2E-06 2.1E-10 85.9 7.9 61 361-428 210-273 (358)
29 3r44_A Fatty acyl COA syntheta 98.0 5.5E-05 1.9E-09 82.3 15.5 60 362-426 359-434 (517)
30 3gqw_A Fatty acid AMP ligase; 98.0 1.6E-05 5.6E-10 87.0 10.6 62 361-427 406-483 (576)
31 4dg8_A PA1221; ANL superfamily 98.0 9.8E-06 3.4E-10 90.7 8.6 133 260-426 275-440 (620)
32 1amu_A GRSA, gramicidin synthe 98.0 7.1E-05 2.4E-09 82.5 15.1 62 361-426 367-451 (563)
33 3tsy_A Fusion protein 4-coumar 98.0 1.3E-05 4.3E-10 94.3 9.3 131 266-427 346-503 (979)
34 4gr5_A Non-ribosomal peptide s 98.0 9E-06 3.1E-10 89.6 7.4 133 260-427 325-491 (570)
35 3ipl_A 2-succinylbenzoate--COA 97.9 3.4E-05 1.1E-09 83.3 10.0 60 363-426 345-419 (501)
36 1v25_A Long-chain-fatty-acid-C 97.7 4.8E-05 1.6E-09 83.2 7.9 60 364-427 381-457 (541)
37 2vsq_A Surfactin synthetase su 97.6 0.00012 4.1E-09 88.6 10.0 129 266-426 722-882 (1304)
38 3hgu_A EHPF; phenazine, antibi 97.5 0.00012 4.1E-09 75.8 7.6 98 266-392 233-342 (369)
39 3lax_A Phenylacetate-coenzyme 96.4 0.0074 2.5E-07 51.5 7.2 93 403-516 2-94 (109)
40 3gxs_A Phenylacetate-coenzyme 96.2 0.011 3.6E-07 50.7 7.4 94 402-516 1-94 (109)
41 3t5a_A Long-chain-fatty-acid-- 91.6 0.29 1E-05 51.6 7.4 38 361-403 415-480 (480)
42 3onr_A Protein transport prote 53.3 48 0.0017 26.1 7.1 49 413-462 15-64 (72)
43 2cc6_A VNG1446H, dodecin; flav 51.1 55 0.0019 25.5 7.1 49 413-462 13-62 (68)
44 2y27_A Phenylacetate-coenzyme 41.1 9.3 0.00032 39.6 1.7 49 23-72 21-77 (437)
45 2ux9_A Dodecin; flavoprotein; 39.9 57 0.0019 25.5 5.6 49 413-462 15-64 (69)
46 2vxa_A Dodecin; flavoprotein, 39.4 58 0.002 25.7 5.6 49 413-462 16-65 (72)
47 2yiz_A Dodecin; flavoprotein, 39.1 60 0.002 25.4 5.6 49 413-462 15-64 (69)
48 4he6_A Peptidase family U32; u 25.9 45 0.0016 26.8 3.1 33 379-415 29-61 (89)
49 3isy_A Bsupi, intracellular pr 24.1 48 0.0016 28.7 3.0 25 361-385 38-64 (120)
No 1
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=100.00 E-value=2.6e-128 Score=1069.77 Aligned_cols=545 Identities=55% Similarity=0.962 Sum_probs=492.6
Q ss_pred cccccHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCChHHHhh-hCCCCChhhhhhcCCCccCCcchHHHHHHHhcCCCC
Q 044130 7 LEYKGEEALKEIEKLTAKADEVQNNLLREILIRNGETEYLRKY-LRGSKDVSDFKRCVPVSTYKNIYPYIQRIAISGEDS 85 (565)
Q Consensus 7 ~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~n~~T~ygk~~-f~~i~~~e~Fr~~VPl~~Yed~~pyIeR~~~~Ge~~ 85 (565)
....+++.++.||+.++||.++|+++|++||++|++|+|||+| |++|+|++||+++|||++|||++|||+||+ +||.+
T Consensus 15 ~~~~~~~~l~~~e~~~~~~~~~Q~~~L~~lL~~~~~T~~gr~~gf~~i~~~~dF~~~VPv~~Yedl~p~ieRi~-~Ge~~ 93 (609)
T 4b2g_A 15 ASEKDAKALQFIEEMTRNADSVQERVLAEILSRNGETEYLKRFKLEGSTVRETFKSKIPVIKYEDLQPEIQRIA-NGDRS 93 (609)
T ss_dssp -CHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHSTTSHHHHTTCCTTCCSHHHHHHHSCCBCHHHHHHHHHHHH-TTCCS
T ss_pred cccchHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCChHHHhcCCCCCCCHHHHHHhCCCccHHHHHHHHHHHh-cCCCC
Confidence 4566788899999999999999999999999999999999999 999999999999999999999999999999 99988
Q ss_pred CccCCcccchhhh---------hccCCCc-------------------------cccceeeccccccccCCCCccccccc
Q 044130 86 SLISGHPITEMLC---------RYICGLD-------------------------EGKAMYFYFVKAEMSTPSGLPTRTVL 131 (565)
Q Consensus 86 ~vl~~~pi~~f~~---------k~~P~~~-------------------------~gk~l~~~~~~~~~~t~~Gip~g~~s 131 (565)
+|||++||.+|++ |+||++. .||+|++.+.+.+.+|++|+|+|++|
T Consensus 94 ~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~Gi~~g~~s 173 (609)
T 4b2g_A 94 AILSAHPISEFLTSSGTSAGERKLMPTIQEELDRRQMLYSLLMPVMNLYVPGLDKGKGLYFLFVKSETRTPGGLLARPVL 173 (609)
T ss_dssp SSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHHHHHHHHHHHHHHHHSCCGGGSEEEECCCCCCCEECTTSCEEECHH
T ss_pred CccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHHHHHHHHHHHHHHhcCCcccCCCeEEEcccCCcccCCCCcccccch
Confidence 9999999999988 6666543 37899998888889999999999999
Q ss_pred ccccccccccccCCCCCCcccCCcceeecCCchhhHHHHHHhhhhcCcceeEEeeecHHHHHHHHHHHHHhHHHHHHHHH
Q 044130 132 TSYYKSKHFKCRTRDPYNDFTSPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCNDIR 211 (565)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~~L~~~~~v~~is~~~~~~l~~~~~~le~~w~el~~dI~ 211 (565)
+.++++.+|+++|.++...|++|.++++++|+.+++||||||||.+++++++|+++|++++++++++|+++|++||+||+
T Consensus 174 ~~~~~s~~f~~~p~~~~~~~~sP~~~i~~~D~~~~~Y~~Ll~~L~~~~~v~~lsa~fa~~ll~~~~~L~~~Weel~~dI~ 253 (609)
T 4b2g_A 174 TSYYKSEHFKTRPYDPYNVYTSPNEAILCADSFQSMYTQMLCGIYERKQVLRLGAVFASGLLRAIRFLQLNWHQLTHDIR 253 (609)
T ss_dssp HHHHTSHHHHTCCCCTTCCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccchhhccccchhhcccCcHHHhcCcCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCccchhhhhhhcCCCChhHHHHHHHHhcCCCccccccccCCCCceEEEEEecchhhhHHHHHHhcCCCCce
Q 044130 212 SGRLDLTITDPGCRSSTLSLLTSPNPTLADEIEEICSRPSWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYSAGKLPL 291 (565)
Q Consensus 212 ~Gt~~~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~gi~~~lWP~l~~i~~~~~G~~~~y~~~l~~~~g~~~~~ 291 (565)
+||++++|+++++|+++++.++ |||++|++|+++|++++|.|++++|||||++|+||++|+|++|+++|++|+|+ +|+
T Consensus 254 ~gtl~~~it~~~~r~a~~~~ls-p~~~la~~l~~~~~~~~~~g~i~~lWPnlk~l~~~~tG~~~~Y~~~l~~~~g~-~p~ 331 (609)
T 4b2g_A 254 TGTLSPKITDPSVRNCVAGVLK-PDPELADLVAGECSKDNWEGIITRIWPNTKYLDVIVTGAMAQYIPTLDYYSGG-LPL 331 (609)
T ss_dssp HTCCCTTCCCHHHHHHTTTTCC-CCHHHHHHHHHHHTSSCCTTTHHHHSTTCCEEEEECSGGGGGGHHHHHHHHTS-CCE
T ss_pred hccCCcCCCCHHHHHHHhcCCC-cCHHHHHHHHHHhCCCccccCHHHhCCCCcEEEEEccCChHHHHHHHHHHcCC-Ccc
Confidence 9999999999999999999998 99999999999999988999999999999999999999999999999999988 999
Q ss_pred ecccccccceeeeecCCCCCCCCCceeeecCCceeEEeeeCCCCCCccccccccccccCCCCceeeccCcccCCeEEEEe
Q 044130 292 VGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVV 371 (565)
Q Consensus 292 ~~~~y~aSEg~~gi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelVi 371 (565)
++++|+||||+||+|++|.|+|+..+|+|+|+.+||||||+++.+.. ..+.+++++|+++|||+|++|||||
T Consensus 332 ~~~~Y~ASEg~~gi~~~p~~~p~~~~~~L~p~~~ffEFIP~~~~~~~--------~~~~~~~~~v~l~eVe~G~~YelVi 403 (609)
T 4b2g_A 332 ACTMYASSECYFGLNLNPMSKPSEVSYTIMPNMAYFEFLPHEHSSIP--------LSRDSPPRLVDLAHVEVGKEYELVI 403 (609)
T ss_dssp ECCEEECSSCEEEECSCTTSCGGGCCEEECTTSCEEEEEEGGGTTSC--------CCSSSCCCCEEGGGCCTTCEEEEEE
T ss_pred ccCcccccceeeeeecCCCCCcccCceeecCCcEEEEEEeccccccc--------cccCCCCccccHhHcCCCCeEEEeh
Confidence 99999999999999999999998899999999999999998864100 0023568999999999999999999
Q ss_pred ccccceeeeecCCEEEEeeeeCCCCEEEEEeecCceeeeeecccCHHHHHHHHHHHHhhcccCCCeEEeEEEeecCCCCC
Q 044130 372 TTFAGLNRYRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVP 451 (565)
Q Consensus 372 Tt~~GLyRYriGDvV~v~gf~~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~~~~~l~~~g~~l~~f~~~~d~~~~p 451 (565)
||++||||||+||+|+|+|||+++|+|+|+||++++||++|||++|++|++||.+|++.|+++|+.|.|||+++|.++.|
T Consensus 404 Tt~~GL~RYr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p 483 (609)
T 4b2g_A 404 TTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIP 483 (609)
T ss_dssp ECTTSCCSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSS
T ss_pred hhhhhhhheecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999988878999999999999988899
Q ss_pred ceeEEEEEEEecCCCCCCCChHHHHHHHHHHHHHHhChHHHHhhccCCccCCeEEEEeCCCcHHHHHHHHHhcCCCCCCC
Q 044130 452 GHYVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGPLEIRVVEPGTFETLMDLLVSQGGSINQY 531 (565)
Q Consensus 452 ~~Y~l~~e~e~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtf~~~~~~~~~~G~~~~Q~ 531 (565)
+||+||||++..+.. ..++ .+++++||..||++||++|+.+|.++|+|+||+|++|++|+|++|+++++++|+++||+
T Consensus 484 ~Hyv~~wEl~~~~~~-~~~~-~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~v~~v~~GtF~~~~~~~~~~G~~~gQ~ 561 (609)
T 4b2g_A 484 GHYVIYWELLVKDSA-NSPS-DELLGQCCLAMEESLNSVYRQGRVADNSIGPLEIRVVKSGTFEELMDYAISRGASINQY 561 (609)
T ss_dssp CEEEEEEEEEESCGG-GCCC-HHHHHHHHHHHHHHSCHHHHHHHHTSCCSCCCEEEEECTTCSCC---------------
T ss_pred CcEEEEEEEeccccc-CCCC-HHHHHHHHHHHHHHhCHHHHHHhhcCCccCCcEEEEeCCCcHHHHHHHHHhCCCCCCCc
Confidence 999999999741100 1233 67899999999999999999999666799999999999999999999999999999999
Q ss_pred CCCcccCCChHHHHHHhccccceeccCCCCCCCC
Q 044130 532 KTPRCIKSNNAALMLLDSHVKDSFFSPRDPKWIP 565 (565)
Q Consensus 532 K~Pr~~~~~~~~~~~L~~~~~~~~~s~~~~~~~~ 565 (565)
|+|||++ +++++++|+++||++|||+++|.|.|
T Consensus 562 K~PR~~~-~~~~~~~L~~~v~~~~~s~~~~~~~~ 594 (609)
T 4b2g_A 562 KVPRCVN-FTPIMELLDSRVVSSHFSPALPHWTP 594 (609)
T ss_dssp -CCSSCC---CCHHHHHTTEEEEEECCSCCCCCS
T ss_pred CCCcccC-CHHHHHHHHhcccccccCCCCCCCCc
Confidence 9999999 99999999999999999999999987
No 2
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=100.00 E-value=4.2e-128 Score=1066.65 Aligned_cols=531 Identities=52% Similarity=0.912 Sum_probs=440.0
Q ss_pred cccccHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCChHHHhhhCCCCChhhhhhcCCCccCCcchHHHHHHHhcCCCCC
Q 044130 7 LEYKGEEALKEIEKLTAKADEVQNNLLREILIRNGETEYLRKYLRGSKDVSDFKRCVPVSTYKNIYPYIQRIAISGEDSS 86 (565)
Q Consensus 7 ~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~n~~T~ygk~~f~~i~~~e~Fr~~VPl~~Yed~~pyIeR~~~~Ge~~~ 86 (565)
-.+.+++.+++||+.++||.++|+++|++||++|++|+|||+||++|+|+++||++|||++|||++|||+||+ +||+++
T Consensus 10 ~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~f~~i~~~~~F~~~VPi~~Yedl~pyIeRi~-~Ge~~~ 88 (581)
T 4eql_A 10 IFDINETFEKQLKDLTSNVKSIQDNLLEEIITPNTKTEYLQRFLIDRFDKELFKKNVPIVSYEDIKPYLDRVV-NGESSD 88 (581)
T ss_dssp ----CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTSHHHHHTTCCSCCHHHHHHHSCCBCHHHHHHHHHHHH-TTCCGG
T ss_pred ccCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCHHHHHHhhcCCCHHHHHHhCCCccHHHHHHHHHHHH-cCCCCc
Confidence 3467788899999999999999999999999999999999999999999999999999999999999999999 999889
Q ss_pred ccCCcccchhhh---------hccCCC-------------------------ccccceeeccccccccCCCCcccccccc
Q 044130 87 LISGHPITEMLC---------RYICGL-------------------------DEGKAMYFYFVKAEMSTPSGLPTRTVLT 132 (565)
Q Consensus 87 vl~~~pi~~f~~---------k~~P~~-------------------------~~gk~l~~~~~~~~~~t~~Gip~g~~s~ 132 (565)
|||++||.+|++ |+||++ ..||+|++++++.+.+|+||+|+|++|+
T Consensus 89 iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~~~~~~~~~~~~~~~~p~~~~Gk~l~l~~~~~~~~t~~G~~~g~~s~ 168 (581)
T 4eql_A 89 VISARTITGFLLSSGTSGGAQKMMPWNNKYLDNLTFIYDLRMQVITKHVKGVEEGKGMMFLFTKQESMTPSGLPARVATS 168 (581)
T ss_dssp GTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCSCTTSEEEECCCCCCCEECTTSCEEECHHH
T ss_pred ccCCCCCCeEEeCCCCCCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCccccCCEEEEeccCCcccCCCCeeecccch
Confidence 999999999998 666664 3378999999999999999999999999
Q ss_pred cccccccccccCCCCCCcccCCcceeecCCchhhHHHHHHhhhhcCcceeEEeeecHHHHHHHHHHHHHhHHHHHHHHHc
Q 044130 133 SYYKSKHFKCRTRDPYNDFTSPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCNDIRS 212 (565)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~~L~~~~~v~~is~~~~~~l~~~~~~le~~w~el~~dI~~ 212 (565)
.++++.+|+++|.++...|++|.++++++|..+++||||||||.+++++++|+++|+++++++++.|+++|++||+||++
T Consensus 169 ~~~~~~~f~~~p~~~~~~~~~P~~~i~~~d~~~~~Y~~ll~~L~~~~~v~~isa~fa~~ll~~~~~L~~~weel~~dI~~ 248 (581)
T 4eql_A 169 SYFKSDYFKNRPSNWYYSYTSPDEVILCPNNTESLYCHLLCGLVQRDEVVRTGSIFASVMVRAIEVLKNSWEELCSNIRS 248 (581)
T ss_dssp HHHTSHHHHTCCCSGGGCBSSCHHHHHCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcchhhcccchhhhcccCchHhhcCCCHHHHHHHHHHHHhhcccccceeeehhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCccchhhhhhhcCCCChhHHHHHHHHhcCCCccccccccCCCCceEEEEEecchhhhHHHHHHhcCCCCcee
Q 044130 213 GRLDLTITDPGCRSSTLSLLTSPNPTLADEIEEICSRPSWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYSAGKLPLV 292 (565)
Q Consensus 213 Gt~~~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~~~~gi~~~lWP~l~~i~~~~~G~~~~y~~~l~~~~g~~~~~~ 292 (565)
||++++|+++++|++|.+.|++|||++|++|+++|++++|.|++++|||||++|+||++|||++|+++|++|+|+ +|++
T Consensus 249 gtl~~~it~~~~r~~~~~~L~~P~p~~A~~l~~~~~~~~~~g~i~~lWPnl~~l~~~~~G~~~~Y~~~l~~~~g~-~p~~ 327 (581)
T 4eql_A 249 GHLSNWVTDLGCQNSVSLVLGGPRPELADTIEEICNQNSWKGIVKRLWPNTKYIETVVTGSMGQYVPMLNYYCND-LPLV 327 (581)
T ss_dssp TCCCTTCCCHHHHHHHHHHHCSCCHHHHHHHHHHHTSSCCTTHHHHHSTTCCEEEEECSGGGGGGHHHHHHHHTT-CCEE
T ss_pred CCCcccCcChHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccCCHHHhCCCCcEEEEEcCCChHHHHHHHHHHcCC-Cccc
Confidence 999999999999999999998899999999999999988999999999999999999999999999999999988 9999
Q ss_pred cccccccceeeeecCCCCCCCCCceeeecCCceeEEeeeCCCCCCccccccccccccCCCCceeeccCcccCCeEEEEec
Q 044130 293 GTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVT 372 (565)
Q Consensus 293 ~~~y~aSEg~~gi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViT 372 (565)
+++|+||||+||||+++.|+++..+|+|+|+.+||||||+++.+ ++++++++|||+|++||||||
T Consensus 328 ~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~~~~~ffEFip~~~~~---------------~~~~v~l~eVe~G~~YelViT 392 (581)
T 4eql_A 328 STTYGSSETTFGINLDPLCKPEDVSYTFMPNMSYFEFIPMDGGD---------------KNDVVDLEDVKLGCTYEPVVT 392 (581)
T ss_dssp CCEEECSSCEEEECSCTTSCGGGCCEEECTTSSEEEEEECSTTC---------------CSSCEEGGGCCTTCEEEEEEE
T ss_pred cCccccccceeeeccCCCCCcccCceeecCCcEEEEEEeccccC---------------CCcEeCHHHcCCCceEEEEEe
Confidence 99999999999999999999988899999999999999988532 478999999999999999999
Q ss_pred cccceeeeecCCEEEEeeeeCCCCEEEEEeecCceeeeeecccCHHHHHHHHHHHHhhcccCCCeEEeEEEeecCCCCCc
Q 044130 373 TFAGLNRYRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVPG 452 (565)
Q Consensus 373 t~~GLyRYriGDvV~v~gf~~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~~~~~l~~~g~~l~~f~~~~d~~~~p~ 452 (565)
|++||||||+||+|+|+|||+++|+|+|+||.++++|++|||++|++|++||.+|++.|+++|+.|.|||+++|.++.|+
T Consensus 393 t~~GL~RYr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~a~~~l~~~g~~l~eft~~~~~~~~p~ 472 (581)
T 4eql_A 393 NFAGLYRMRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQAKLVLESSGLDLKDFTSYADTSTFPG 472 (581)
T ss_dssp CSSSCCSEECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHHC--------------CEEEECSSSSB
T ss_pred eccceeeEEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHHHHHhhhhcCCEEEEEEEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999998777778999999999999888999
Q ss_pred eeEEEEEEEecC------CCCCCCChHHHHHHHHHHHHHHhChHHHHhhccCCccCCeEEEEeCCCcHHHHHHHHHhcCC
Q 044130 453 HYVLYWEIQIVD------SPALPLDHQKVLEECCIAVEEQLDYVYRRCRSHDKSVGPLEIRVVEPGTFETLMDLLVSQGG 526 (565)
Q Consensus 453 ~Y~l~~e~e~~~------~~~~~~~~~~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtf~~~~~~~~~~G~ 526 (565)
||+||||+++.+ .. .+++ .+++++||..||++||++|+.+|.++|+|+||+|++|++|+|++|+++++++|+
T Consensus 473 Hy~~~wel~~~~~~~~~~~~-~~~~-~~~l~~~~~~LD~~LN~~Y~~~R~~~~~L~pl~i~~v~~GtF~~~~~~~~~~G~ 550 (581)
T 4eql_A 473 HYVVYLEVDTKEGEEKETAQ-FELD-EEALSTCCLVMEESLDNVYKRCRFKDGSIGPLEIRVVRQGTFDSLMDFFISQGA 550 (581)
T ss_dssp EEEEECC----------------CC-HHHHHHHHHHHHHTSCHHHHHHHHTTCCBCCCEEEC------------------
T ss_pred eEEEEEEEeccccccccccc-CCCC-HHHHHHHHHHHHHHhCHHHHHHHhcCCccCCcEEEEeCCCcHHHHHHHHHhCCC
Confidence 999999997511 00 1233 578999999999999999999997677999999999999999999999999999
Q ss_pred CCCCCCCCcccCCChHHHHHHhccccceecc
Q 044130 527 SINQYKTPRCIKSNNAALMLLDSHVKDSFFS 557 (565)
Q Consensus 527 ~~~Q~K~Pr~~~~~~~~~~~L~~~~~~~~~s 557 (565)
++||||+|||++ +++++++|+++||++|||
T Consensus 551 ~~gQ~K~PR~~~-~~~~~~~L~~~v~~~~~s 580 (581)
T 4eql_A 551 STGQYKTPRCIK-SGKALQVLETCVVAKFFS 580 (581)
T ss_dssp ---------------------------CEEC
T ss_pred CCCCcCCCcccC-CHHHHHHHHhcchheeec
Confidence 999999999999 999999999999999998
No 3
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=100.00 E-value=8.1e-126 Score=1046.16 Aligned_cols=529 Identities=39% Similarity=0.724 Sum_probs=486.3
Q ss_pred cccccHHHHHHHHHHHhcHHHHHHHHHHHHHHHcCCChHHHhh-hCCC-CChh-hhhhcCCCccCCcchHHHHHHHhcCC
Q 044130 7 LEYKGEEALKEIEKLTAKADEVQNNLLREILIRNGETEYLRKY-LRGS-KDVS-DFKRCVPVSTYKNIYPYIQRIAISGE 83 (565)
Q Consensus 7 ~~~~~~~~~~~~e~~~~~~~~~Q~~~L~~iL~~n~~T~ygk~~-f~~i-~~~e-~Fr~~VPl~~Yed~~pyIeR~~~~Ge 83 (565)
....+++.+++||+.++||.++|+++|++||++|++|+|||+| |++| +|++ +||++|||++|||++|||+||+ +||
T Consensus 12 ~~~~~~~~~~~~e~~~~~~~~vQ~~vL~~iL~~n~~Teygk~~gf~~i~~~~e~dF~~~VPi~~Yedl~pyIeRi~-~Ge 90 (581)
T 4epl_A 12 ETFDMNRVIDEFDEMTRNAHQVQKQTLKEILLKNQSAIYLQNCGLNGNATDPEEAFKSMVPLVTDVELEPYIKRMV-DGD 90 (581)
T ss_dssp -CCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHTTTCC----CHHHHHHHHSCCBCHHHHHHHHHHHH-TTC
T ss_pred cccccHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCHHHHhcCCCcccCCHHHHHHHhCCCccHHHHHHHHHHHH-CCC
Confidence 4567788899999999999999999999999999999999999 9999 9999 9999999999999999999999 999
Q ss_pred CCCccCCcccchhhh---------hccCCC------------------------c-cccceeeccccccccCCCCccccc
Q 044130 84 DSSLISGHPITEMLC---------RYICGL------------------------D-EGKAMYFYFVKAEMSTPSGLPTRT 129 (565)
Q Consensus 84 ~~~vl~~~pi~~f~~---------k~~P~~------------------------~-~gk~l~~~~~~~~~~t~~Gip~g~ 129 (565)
.++|||++||.+|++ |+||++ . .||+|++.+.+.+.+|++|+|+|+
T Consensus 91 ~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~~~~~~~~~~~~~~~~p~l~~~Gk~L~l~~~s~~~~t~~Gi~~G~ 170 (581)
T 4epl_A 91 TSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMENTLQLFRTAFAFRNRDFPIDDNGKALQFIFSSKQYISTGGVPVGT 170 (581)
T ss_dssp CSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHHHHSCCCTTCEEEEECCCCCCEECTTSCEEEC
T ss_pred CCCccCCCCcceEEecCCCCCCCccccccCHHHHHHHHHHHHHHHHHHhhCCccccCCcEEEEeecCCcccCCCCceeee
Confidence 779999999999998 666663 3 578899888888899999999999
Q ss_pred ccccccccccccccCCCCCCcccCCcceeecCCchhhHHHHHHhhhhcCcceeEEeeecHHHHHHHHHHHHHhHHHHHHH
Q 044130 130 VLTSYYKSKHFKCRTRDPYNDFTSPDPAILCNDSNQSMYCQLLAGLIHRHQVLRLGAVFASALLRAISFLERNWFQLCND 209 (565)
Q Consensus 130 ~s~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~d~~~~~Y~~ll~~L~~~~~v~~is~~~~~~l~~~~~~le~~w~el~~d 209 (565)
+|+.++++..|+++|..+...|++|.++++++|+.+++||||||||.++++|..|+++||++|+++++.|+++|++||+|
T Consensus 171 ~S~~~~~s~~f~~~p~~~~~~~t~P~e~i~~~D~~~~~Y~~Ll~~L~~~~~v~~i~a~fas~ll~~~~~l~~~We~l~~d 250 (581)
T 4epl_A 171 ATTNVYRNPNFKAGMKSITSPSCSPDEVIFSPDVHQALYCHLLSGILFRDQVQYVFAVFAHGLVHAFRTFEQVWEEIVTD 250 (581)
T ss_dssp HHHHHHTSTTHHHHHGGGSCCBSSCHHHHTCSCHHHHHHHHHHHHHHTGGGEEEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhcchhhcCchhhhhcccCCHHHhcCCCHHHHHHHHHHHhhhccccccEEeeccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888887766667789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcccCCCCCCCccchhhhhhhcCCCChhHHHHHHHHhcCC-CccccccccCCCCceEEEEEecchhhhHHHHHHhcCCC
Q 044130 210 IRSGRLDLTITDPGCRSSTLSLLTSPNPTLADEIEEICSRP-SWKGILCQLWPRAKYIEAVVTGSMAQYIPSLEYYSAGK 288 (565)
Q Consensus 210 I~~Gt~~~~i~~~~~r~~l~~~L~~p~p~~A~~L~~~~~~~-~~~gi~~~lWP~l~~i~~~~~G~~~~y~~~l~~~~g~~ 288 (565)
|++||++++|+++++|.++.+.++ |||++|++|+++|+++ +|.|++++|||||++|+||++|+|++|+++|++|+|+
T Consensus 251 I~~gtl~~~it~~~~R~~l~~v~~-p~~~~a~~l~~~~~~~~~~~g~i~~lWPnl~~i~~~~~G~~~~Y~~~l~~~~g~- 328 (581)
T 4epl_A 251 IKDGVLSNRITVPSVRTAMSKLLT-PNPELAETIRTKCMSLSNWYGLIPALFPNAKYVYGIMTGSMEPYVPKLRHYAGD- 328 (581)
T ss_dssp HHHTCCCTTCCCHHHHHHHHTTCC-CCHHHHHHHHHHHHHSSTTTTHHHHHCTTCCCEEEECSGGGGGGHHHHHHHHTT-
T ss_pred HHhcCCCcCCCCHHHHHHHhCCCC-CCHHHHHHHHHHhCCCCccccCHHHhCCCCceEEEEeCCChHHHHHHHHHHcCC-
Confidence 999999999999999999999998 9999999999999986 7999999999999999999999999999999999988
Q ss_pred CceecccccccceeeeecCCCCCCCCCceeeecCCceeEEeeeCCCCCCccccccccccccCCCCceeeccCcccCCeEE
Q 044130 289 LPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYE 368 (565)
Q Consensus 289 ~~~~~~~y~aSEg~~gi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~Ye 368 (565)
+|+++++|+||||+||||++|.|+++..+|+|+|+.+||||||+++.+ .+++++|+++|||+|++||
T Consensus 329 ~p~~~~~Y~ASEg~~gi~~~p~~~~~~~~~~L~p~~~ffEFiP~~~~~-------------~~~~~~v~l~eve~G~~Ye 395 (581)
T 4epl_A 329 LPLVSHDYGSSEGWIAANVTPRLSPEEATFAVIPNLGYFEFLPVSETG-------------EGEEKPVGLTQVKIGEEYE 395 (581)
T ss_dssp SCEEECCEEETTEEEEECCCTTSCTTTCCEEECTTSCEEEEEEC--------------------CCCEEGGGCCTTCEEE
T ss_pred CccccCceeccceeeeeecCCCCCccccceeecCCcEEEEEEeccccc-------------CCCCceeeHHHcCCCCeEE
Confidence 999999999999999999999999988999999999999999988643 2357899999999999999
Q ss_pred EEeccccceeeeecCCEEEEeeeeCCCCEEEEEeecCceeeeeecccCHHHHHHHHHHHHhhcccCCCeEEeEEEeecCC
Q 044130 369 LVVTTFAGLNRYRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTS 448 (565)
Q Consensus 369 lViTt~~GLyRYriGDvV~v~gf~~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~~~~~l~~~g~~l~~f~~~~d~~ 448 (565)
|||||++||||||+||||+|+||||++|+|+|+||++++||++|||++|++|++||.+|+++|+++|+.|.|||+++|.+
T Consensus 396 lviTt~~GL~RYr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~ 475 (581)
T 4epl_A 396 VVITNYAGLYRYRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVS 475 (581)
T ss_dssp EEEESTTSCSSEEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECS
T ss_pred EEEeeccceeeEEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCC
Confidence 99999999999999999999999999999999999999999999999999999999999987777899999999999988
Q ss_pred CCCceeEEEEEEEecCCCCCCCChHHHHHHHHHHHHHHh-ChHHHHhhccCCccCCeEEEEeCCCcHHHHHHHHHhcCCC
Q 044130 449 TVPGHYVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQL-DYVYRRCRSHDKSVGPLEIRVVEPGTFETLMDLLVSQGGS 527 (565)
Q Consensus 449 ~~p~~Y~l~~e~e~~~~~~~~~~~~~~l~~~~~~ld~~L-n~~Y~~~R~~~g~l~p~~v~~v~~gtf~~~~~~~~~~G~~ 527 (565)
+.|+||+||||++ +. ++ .+++++||..||++| |++|+.+|. .|+|+||+|++|++|+|++|++|++++|++
T Consensus 476 ~~p~hyv~~wE~~--~~----~~-~~~l~~~~~~Ld~~L~n~~Y~~~R~-~~~L~pl~v~~v~~G~F~~l~~~~~~~G~~ 547 (581)
T 4epl_A 476 TDPGHYAIFWEIS--GE----TN-EDVLQDCCNCLDRAFIDAGYVSSRK-CKTIGALELRVVAKGTFRKIQEHFLGLGSS 547 (581)
T ss_dssp SSSCEEEEEEEES--SC----CC-HHHHHHHHHHHHHHCCCHHHHHHHH-HTSSCCCEEEEECTTHHHHHHHHHHTTC--
T ss_pred CCCCcEEEEEeec--CC----CC-HHHHHHHHHHHHHHhCChhHHHHHh-cCCCCCcEEEEeCcchHHHHHHHHHhCCCC
Confidence 8999999999984 21 33 568999999999999 999999995 579999999999999999999999999999
Q ss_pred CCCCCCCccc--CCChHHHHHHhccccceeccCCC
Q 044130 528 INQYKTPRCI--KSNNAALMLLDSHVKDSFFSPRD 560 (565)
Q Consensus 528 ~~Q~K~Pr~~--~~~~~~~~~L~~~~~~~~~s~~~ 560 (565)
+||||+|||+ + +++++++|+++||++|||+++
T Consensus 548 ~~Q~K~PR~~~~~-~~~~~~~L~~~v~~~~~s~~~ 581 (581)
T 4epl_A 548 AGQFKMPRCVKPS-NAKVLQILCENVVSSYFSTAF 581 (581)
T ss_dssp ----CCCSSCCTT-CHHHHHHHHTTEEEEEECCCC
T ss_pred CCCcCCCeeecCC-CHHHHHHHHhcccccccCCCC
Confidence 9999999999 8 999999999999999999875
No 4
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.43 E-value=2.6e-12 Score=137.18 Aligned_cols=199 Identities=18% Similarity=0.183 Sum_probs=128.4
Q ss_pred EEEEEecc---hhhhHHHHHHhcCCCCceecccccccce-eeeecCCCCCCCCCceeeecCCceeEEeeeCCCCCCcccc
Q 044130 266 IEAVVTGS---MAQYIPSLEYYSAGKLPLVGTMYASSEC-YFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGGENGTLLS 341 (565)
Q Consensus 266 i~~~~~G~---~~~y~~~l~~~~g~~~~~~~~~y~aSEg-~~gi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~ 341 (565)
+..+++|| ....++++++.+| ++++ ..||+||+ ..++...+ + ...++.+.......|.+++++
T Consensus 208 lr~i~~gGe~l~~~~~~~~~~~~g--~~v~-~~YG~TE~~~~~~~~~~--~-~~~g~~~~~~~~~v~i~d~~~------- 274 (436)
T 3qov_A 208 LKTLVIGAEPHTDEQRRKIERMLN--VKAY-NSFGMTEMNGPGVAFEC--Q-EQNGMHFWEDCYLVEIIDPET------- 274 (436)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHHT--SEEE-EEEEEGGGTEEEEEEEC--T-TCSSEEECTTTEEEEEECTTT-------
T ss_pred ccEEEEeCCcCCHHHHHHHHHHhC--ccEE-ecCcchhhcCCeeEEec--C-CCCeeEEccCceEEEEEECCC-------
Confidence 55556666 3456788888885 8888 99999997 33222222 1 234566655666788887543
Q ss_pred ccccccccCCCCceeeccCcccCCeEEEEecccc----ceeeeecCCEEEEeeeeCC------CCEE-EEEeecCceeee
Q 044130 342 MEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTFA----GLNRYRIGDVLQVTGFYNR------APQF-RFICRRNVVLSI 410 (565)
Q Consensus 342 ~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~~----GLyRYriGDvV~v~gf~~~------~P~i-~F~gR~~~~l~i 410 (565)
.++ |..|+.+||+||+.. .+.||++||++++.. ++ .|++ .|+||.++++.+
T Consensus 275 -----------g~~-----~~~g~~Gel~v~~~~~~~~~~~~y~TGDl~~~~~--~gc~cG~~~~~il~i~GR~dd~ik~ 336 (436)
T 3qov_A 275 -----------GEP-----VPEGEIGELVLTTLDREMMPLIRYRTRDLTRILP--GKCPCGRTHLRIDRIKGRSDDMFII 336 (436)
T ss_dssp -----------CSB-----CSTTCCEEEEEEESSCCSSCCCSEEEEEEECEEC--SCCTTCCCSCEECCCCCBSSSCEEE
T ss_pred -----------CCC-----CCCCCceEEEEeccCcCCceEEEEEcCCEEEEcC--CCCCCCCCccccCcccCccCCEEEE
Confidence 223 458999999999752 256899999999986 44 5677 999999999999
Q ss_pred eecccCHHHHHHHHHHHHhhcccCCCeEEeEEEeecCCCCCceeEEEEEEEecCCCCCCCChHHHHHHHHHHHHHHhChH
Q 044130 411 DNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQLDYV 490 (565)
Q Consensus 411 ~GEkl~e~~v~~av~~~~~~l~~~g~~l~~f~~~~d~~~~p~~Y~l~~e~e~~~~~~~~~~~~~~l~~~~~~ld~~Ln~~ 490 (565)
.|+++...+|++++.+. .++. ..+.+..+........++++++. ... .++....+++.+.+.+.|
T Consensus 337 ~G~~v~p~eiE~~l~~~------p~v~-~~~vv~~~~~~~~~~l~a~v~~~-~~~----~~~~~~~~~l~~~l~~~l--- 401 (436)
T 3qov_A 337 KGVNIFPMQVEKILVQF------PELG-SNYLITLETVNNQDEMIVEVELS-DLS----TDNYIELEKIRRDIIRQL--- 401 (436)
T ss_dssp TTEEECHHHHHHHHTTC------TTEE-EEEEEEEEEETTEEEEEEEEEEC-TTC----CCCHHHHHHHHHHHHHHH---
T ss_pred CCEEECHHHHHHHHHhC------cCcC-CcEEEEEEcCCCCcEEEEEEEEc-Ccc----ccchhhHHHHHHHHHHHH---
Confidence 99999999999998642 2221 12333322222233556777775 221 211223455556666666
Q ss_pred HHHhhccCCccCCeEEEEeCCCcHHH
Q 044130 491 YRRCRSHDKSVGPLEIRVVEPGTFET 516 (565)
Q Consensus 491 Y~~~R~~~g~l~p~~v~~v~~gtf~~ 516 (565)
+... .+ |..|.+|..+.|.+
T Consensus 402 ----~~~~-~~-p~~i~~v~~~~lP~ 421 (436)
T 3qov_A 402 ----KDEI-LV-TPKVKLVKKGSLPQ 421 (436)
T ss_dssp ----HHHH-SS-CCEEEEECTTCCC-
T ss_pred ----HHhc-CC-ceEEEEeCCCcccC
Confidence 2221 12 45899999888875
No 5
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.36 E-value=1.5e-11 Score=131.47 Aligned_cols=204 Identities=12% Similarity=0.100 Sum_probs=126.5
Q ss_pred CCCCceEEEEEecc---hhhhHHHHHHhcCCCCceecccccccce--e-eeecCCCCCCCCCceeeecCCceeEEeeeCC
Q 044130 260 WPRAKYIEAVVTGS---MAQYIPSLEYYSAGKLPLVGTMYASSEC--Y-FGVNLKPLSNPADVSFTLLPNMCYFEFLPLG 333 (565)
Q Consensus 260 WP~l~~i~~~~~G~---~~~y~~~l~~~~g~~~~~~~~~y~aSEg--~-~gi~~~~~~~~~~~~~~l~p~~~ffEFip~~ 333 (565)
++++ ..+++|| ....++++++.+| ++++ ..||+||+ . ++.... ....++++.....++|+++++
T Consensus 211 ~~~l---r~i~~gGe~l~~~~~~~~~~~~g--~~v~-~~YG~TE~~g~~~~~~~~----~~~~g~~~~~~~~~~~i~d~~ 280 (443)
T 2y4o_A 211 ESSL---KIGIFGAEPWTQALRNEVETRVG--IDAL-DIYGLSEVMGPGVACECV----ETKDGPVIWEDHFYPEIIDPV 280 (443)
T ss_dssp GSSC---CEEEEESSCCCHHHHHHHHHHHT--CEEE-EEEEETTTTEEEEEEECT----TTCCSEEECTTTEEEEEECTT
T ss_pred cCCc---eEEEECCCcCCHHHHHHHHHHhC--cCEE-eccCchhhcCCeEEeccC----CCCCceEEccCCeEEEEEcCC
Confidence 4664 4455555 3467788888785 8888 99999994 2 444322 112256664466788998755
Q ss_pred CCCCccccccccccccCCCCceeeccCcccCCeEEEEeccccc----eeeeecCCEEEEeee-eCCCCEE-EEEeecCce
Q 044130 334 GENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTFAG----LNRYRIGDVLQVTGF-YNRAPQF-RFICRRNVV 407 (565)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~~G----LyRYriGDvV~v~gf-~~~~P~i-~F~gR~~~~ 407 (565)
+ .++ |..|+.+||+||+... +.||+|||++++..- -.-.|+| .|+||.+++
T Consensus 281 ~------------------g~~-----~~~G~~Gel~v~~~t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~ 337 (443)
T 2y4o_A 281 T------------------GEV-----LPDGSQGELVFTSLTKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDM 337 (443)
T ss_dssp T------------------CCB-----CCTTCCEEEEEEESSCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCC
T ss_pred C------------------CCC-----CCCCCceEEEEeCCCcccChhheeecCCEEEEcCCCCCCccccCccccccCCe
Confidence 3 223 3489999999997632 568999999999861 1224788 899999999
Q ss_pred eeeeecccCHHHHHHHHHHHHhhcccCCCeEEeEEEeecCCCCCceeEEEEEEEec-CCCCCCCChHHHHHHHHHHHHHH
Q 044130 408 LSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVPGHYVLYWEIQIV-DSPALPLDHQKVLEECCIAVEEQ 486 (565)
Q Consensus 408 l~i~GEkl~e~~v~~av~~~~~~l~~~g~~l~~f~~~~d~~~~p~~Y~l~~e~e~~-~~~~~~~~~~~~l~~~~~~ld~~ 486 (565)
+.+.|+++++.+|++++.+. .++. ..+.+...........++++++... +. ... ....+++.+.+.+.
T Consensus 338 i~~~G~~v~p~eiE~~l~~~------p~V~-~~~vv~~~~~~~~~~~~a~v~~~~~~~~---~~~-~~~~~~l~~~l~~~ 406 (443)
T 2y4o_A 338 LIVRGVNVFPSQIEEIVVAL------PLLS-GQFQITLSRDGHMDRLDLAVELRSEAAA---SVT-DGERAALARELQHR 406 (443)
T ss_dssp EEETTEEECHHHHHHHHHTS------TTEE-EEEEEEEEEETTEEEEEEEEEECHHHHT---TCC-HHHHHHHHHHHHHH
T ss_pred EEECCEEECHHHHHHHHHhC------cCcC-ccEEEEEecCCCCceEEEEEEECCcccc---cch-hhHHHHHHHHHHHH
Confidence 99999999999999999652 2321 1233332211122344566666310 00 001 12344455555555
Q ss_pred hChHHHHhhccCCccCCeEEEEeCCCcHHH
Q 044130 487 LDYVYRRCRSHDKSVGPLEIRVVEPGTFET 516 (565)
Q Consensus 487 Ln~~Y~~~R~~~g~l~p~~v~~v~~gtf~~ 516 (565)
| .... .+ |..|.+|..+.+.+
T Consensus 407 l-------~~~~-~~-p~~v~~v~~~~lP~ 427 (443)
T 2y4o_A 407 I-------KTMV-GV-SSGVTVLAAGGIPA 427 (443)
T ss_dssp H-------HHHT-CC-CCEEEEECTTCSCC
T ss_pred H-------HHHh-CC-ceEEEEeCCCcccC
Confidence 5 2111 12 45788898777764
No 6
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.14 E-value=2.4e-10 Score=122.00 Aligned_cols=203 Identities=14% Similarity=0.107 Sum_probs=126.2
Q ss_pred CCCCceEEEEEecc---hhhhHHHHHHhcCCCCceecccccccce--e-eeecCCCCCCCCCceeeecCCceeEEeeeCC
Q 044130 260 WPRAKYIEAVVTGS---MAQYIPSLEYYSAGKLPLVGTMYASSEC--Y-FGVNLKPLSNPADVSFTLLPNMCYFEFLPLG 333 (565)
Q Consensus 260 WP~l~~i~~~~~G~---~~~y~~~l~~~~g~~~~~~~~~y~aSEg--~-~gi~~~~~~~~~~~~~~l~p~~~ffEFip~~ 333 (565)
++++ ..+++|| ....++++++.+| ++++ ..||+||+ . ++.+.. ....++++.....++|+++++
T Consensus 209 ~~~l---r~i~~gGe~l~~~~~~~~~~~~g--~~v~-~~YG~TE~~g~~~~~~~~----~~~~g~~~~~~~~~~~i~d~~ 278 (437)
T 2y27_A 209 QSSL---RIGIFGAEPWTNDMRVAIEQRMG--IDAV-DIYGLSEVMGPGVASECV----ETKDGPTIWEDHFYPEIIDPE 278 (437)
T ss_dssp GSSC---CEEEEESSCCCHHHHHHHHHHHT--SEEE-EEEEETTTTEEEEEECCT----TTCSSCEECTTTEEEEEECTT
T ss_pred cCCe---eEEEEcCccCCHHHHHHHHHHHC--cCEE-ecCCchhhcCCeeEEecC----CCCCceeEccCceEEEEEcCC
Confidence 5674 4455555 3457788887775 8888 99999994 3 454322 112256654466788999765
Q ss_pred CCCCccccccccccccCCCCceeeccCcccCCeEEEEeccccc----eeeeecCCEEEEeee-eCCCCEE-EEEeecCce
Q 044130 334 GENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTFAG----LNRYRIGDVLQVTGF-YNRAPQF-RFICRRNVV 407 (565)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~~G----LyRYriGDvV~v~gf-~~~~P~i-~F~gR~~~~ 407 (565)
+ .++ |..|+.+||+||+... +.||+|||++++... -...|+| .|+||.+++
T Consensus 279 ~------------------g~~-----~~~g~~Gel~v~~~t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~ 335 (437)
T 2y27_A 279 T------------------GEV-----LPDGELGELVFTSLTKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDM 335 (437)
T ss_dssp T------------------CCB-----CCTTCCEEEEEEESSCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGC
T ss_pred C------------------CCC-----CCCCCccEEEEecCCcCCchhheeecCCEEEEeCCCCCCccccCccccccCCe
Confidence 3 223 3489999999997643 679999999999862 2347888 999999999
Q ss_pred eeeeecccCHHHHHHHHHHHHhhcccCCCeEEeEEEeecCCCCCceeEEEEEEEecCCCCCCCChHHHHHHHHHHHHHHh
Q 044130 408 LSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCIAVEEQL 487 (565)
Q Consensus 408 l~i~GEkl~e~~v~~av~~~~~~l~~~g~~l~~f~~~~d~~~~p~~Y~l~~e~e~~~~~~~~~~~~~~l~~~~~~ld~~L 487 (565)
+.+.|+++++.+|++++.+. + ++. ..+.+..+........++++++. .. ...+ ....+++.+.+.+.|
T Consensus 336 i~~~G~~v~p~eiE~~l~~~-p-----~V~-~~~vv~~~~~~~~~~l~a~v~~~--~~--~~~~-~~~~~~l~~~l~~~l 403 (437)
T 2y27_A 336 MIVRGVNVFPTQIEEQLLKQ-R-----ALA-PHYQIVLTKEGPLDVLTLNVEPC--PE--TAPD-TAAIQVAKQALAYDI 403 (437)
T ss_dssp EEETTEEECHHHHHHHHTTC-T-----TBC-SCCEEEEEEETTEEEEEEEECBC--TT--TTTC-HHHHHHHHHHHHHHH
T ss_pred EEECCeEECHHHHHHHHHhC-c-----CcC-ccEEEEEeecCCCceEEEEEEEC--CC--ccch-hhhHHHHHHHHHHHH
Confidence 99999999999999999653 1 211 02222222111223445666553 11 0111 123344555555555
Q ss_pred ChHHHHhhccCCccCCeEEEEeCCCcHHH
Q 044130 488 DYVYRRCRSHDKSVGPLEIRVVEPGTFET 516 (565)
Q Consensus 488 n~~Y~~~R~~~g~l~p~~v~~v~~gtf~~ 516 (565)
.... . -|..|.+|..+.|.+
T Consensus 404 -------~~~~-~-~p~~v~~v~~~~lP~ 423 (437)
T 2y27_A 404 -------KSLI-G-VTAVINVLPVNGIER 423 (437)
T ss_dssp -------HHHH-C-CCEEEEECCTTCSCC
T ss_pred -------HHhc-C-CceEEEEeCCCCccC
Confidence 2111 1 245788888777764
No 7
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=98.55 E-value=9.1e-07 Score=98.13 Aligned_cols=131 Identities=16% Similarity=0.293 Sum_probs=87.5
Q ss_pred CCCCceEEEEEecc---hhhhHHHHHHhcCCCCceecccccccceeeeecCCC--CCCCCCceeeecCCceeEEeeeCCC
Q 044130 260 WPRAKYIEAVVTGS---MAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKP--LSNPADVSFTLLPNMCYFEFLPLGG 334 (565)
Q Consensus 260 WP~l~~i~~~~~G~---~~~y~~~l~~~~g~~~~~~~~~y~aSEg~~gi~~~~--~~~~~~~~~~l~p~~~ffEFip~~~ 334 (565)
.++ +..+++|| ....++++++.+| ++++ .+||.||+.+.+...+ ...++..+. .+|+. -.+.++.+
T Consensus 340 l~~---lr~i~~gGe~l~~~~~~~~~~~~g--~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~-~v~ivd~~- 410 (580)
T 3etc_A 340 FST---LKYAVVAGEPLNPEVFNRFLEFTG--IKLM-EGFGQTETVVTIATFPWMEPKPGSIGK-PTPGY-KIELMDRD- 410 (580)
T ss_dssp CTT---CCEEEECSSCCCHHHHHHHHHHHS--CCCE-EEECCTTSSCCEECCTTSCCCTTCCBE-ECTTC-EEEEECTT-
T ss_pred Ccc---ceEEEEccCCCCHHHHHHHHHHhC--CeEe-cccccccccceeecCCCCCCCCCcccc-CCCCC-EEEEECCC-
Confidence 456 45556666 2345567777776 7888 9999999854332212 111222333 23433 34555432
Q ss_pred CCCccccccccccccCCCCceeeccCcccCCeEEEEeccc----cceee-----------------eecCCEEEEeeeeC
Q 044130 335 ENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF----AGLNR-----------------YRIGDVLQVTGFYN 393 (565)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~----~GLyR-----------------YriGDvV~v~gf~~ 393 (565)
.+. +.+|+.+||+|++. .|+.+ |+|||++++..
T Consensus 411 ------------------g~~-----~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~d~--- 464 (580)
T 3etc_A 411 ------------------GRL-----CEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDE--- 464 (580)
T ss_dssp ------------------SCB-----CCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEECT---
T ss_pred ------------------CCC-----CCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEECC---
Confidence 222 55899999999863 22333 99999998853
Q ss_pred CCCEEEEEeecCceeeeeecccCHHHHHHHHHH
Q 044130 394 RAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 394 ~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~ 426 (565)
--.+.|+||.++++.+.|+++...+|+.++.+
T Consensus 465 -dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~ 496 (580)
T 3etc_A 465 -DGYLWFVGRADDIIKTSGYKVGPFEVESALIQ 496 (580)
T ss_dssp -TSCEEEEEESSSCEEETTEEECHHHHHHHHTT
T ss_pred -CCcEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence 23689999999999999999999999999865
No 8
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=98.42 E-value=6.7e-06 Score=89.27 Aligned_cols=134 Identities=18% Similarity=0.194 Sum_probs=88.0
Q ss_pred cccCCCCceEEEEEecc---hhhhHHHHHHhcCCCCceecccccccceeeeec---CC----CCCCCCCceeeecCCcee
Q 044130 257 CQLWPRAKYIEAVVTGS---MAQYIPSLEYYSAGKLPLVGTMYASSECYFGVN---LK----PLSNPADVSFTLLPNMCY 326 (565)
Q Consensus 257 ~~lWP~l~~i~~~~~G~---~~~y~~~l~~~~g~~~~~~~~~y~aSEg~~gi~---~~----~~~~~~~~~~~l~p~~~f 326 (565)
....|.++ .+++|| .....+++++.+++ ++++ ..||.||+.+.+. .. ........+. ..|+. -
T Consensus 256 ~~~~~~l~---~~~~~G~~l~~~~~~~~~~~~~~-~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~-~ 328 (511)
T 3e7w_A 256 QDLLPHAD---TFMFCGEVLPVSVAKALLERFPK-AKIF-NTYGPTEATVAVTSVEITNDVISRSESLPVGF-AKPDM-N 328 (511)
T ss_dssp TTTCTTCC---EEEECSSCCCHHHHHHHHHHCTT-CEEE-ECCCCGGGSSCSEEEEECHHHHTTCSSCCCBE-ECTTC-E
T ss_pred cccCCccc---EEEEecCCCCHHHHHHHHHHCCC-cEEE-eCcccchheeeeeEEeccccccccCCcCCCcc-eeCCC-E
Confidence 34556644 445555 24566778888876 8988 9999999743211 11 0011111222 22332 2
Q ss_pred EEeeeCCCCCCccccccccccccCCCCceeeccCcccCCeEEEEeccc--------------------cceeeeecCCEE
Q 044130 327 FEFLPLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF--------------------AGLNRYRIGDVL 386 (565)
Q Consensus 327 fEFip~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~--------------------~GLyRYriGDvV 386 (565)
.+.++.+ .++ +..|+.+||+|+.. .|-|.|+|||++
T Consensus 329 ~~i~d~~-------------------g~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg 384 (511)
T 3e7w_A 329 IFIMDEE-------------------GQP-----LPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAG 384 (511)
T ss_dssp EEEECTT-------------------SCB-----CCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEE
T ss_pred EEEECCC-------------------CCC-----CCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeE
Confidence 3444422 222 45899999999853 233469999999
Q ss_pred EEeeeeCCCCEEEEEeecCceeeeeecccCHHHHHHHHHH
Q 044130 387 QVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 387 ~v~gf~~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~ 426 (565)
++. + -.+.|+||.++++.+.|++++..+|++++.+
T Consensus 385 ~~~---d--G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 419 (511)
T 3e7w_A 385 FIQ---D--GQIFCQGRLDFQIKLHGYRMELEEIEFHVRQ 419 (511)
T ss_dssp EEE---T--TEEEEEEESSSEEEETTEEEEHHHHHHHHHH
T ss_pred Ecc---C--CeEEEEccccCEEEECCEEeCHHHHHHHHHh
Confidence 873 3 3799999999999999999999999999976
No 9
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=98.38 E-value=4e-06 Score=91.35 Aligned_cols=128 Identities=10% Similarity=0.020 Sum_probs=82.6
Q ss_pred EEEEEecc---hhhhHHHHHHhcCCCCceecccccccce-eeeecC-CCCCCCCCceeeecCCceeEEeeeCCCCCCccc
Q 044130 266 IEAVVTGS---MAQYIPSLEYYSAGKLPLVGTMYASSEC-YFGVNL-KPLSNPADVSFTLLPNMCYFEFLPLGGENGTLL 340 (565)
Q Consensus 266 i~~~~~G~---~~~y~~~l~~~~g~~~~~~~~~y~aSEg-~~gi~~-~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~ 340 (565)
+..+++|| ....++++++.+| ++++ ..||.||+ .+.... ...+.....+. .+|+. -.+.++.+
T Consensus 302 lr~~~~gGe~l~~~~~~~~~~~~g--~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~-~~~i~d~~------- 369 (529)
T 2v7b_A 302 IRICTSAGEALPREIGERFTAHFG--CEIL-DGIGSTEMLHIFLSNRAGAVEYGTTGR-PVPGY-EIELRDEA------- 369 (529)
T ss_dssp CCEEEECSSCCCHHHHHHHHHHHS--CCEE-EEEECTTTSSEEEECCTTCCCTTSCCE-ECTTC-EEEEECTT-------
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhC--Ccee-eeEchhhcCceeeccccCCCccCCccc-CCCCC-EEEEECCC-------
Confidence 45555565 2356677777775 7888 99999997 332221 11122222233 23333 35555422
Q ss_pred cccccccccCCCCceeeccCcccCCeEEEEeccc---cceee-------------eecCCEEEEeeeeCCCCEEEEEeec
Q 044130 341 SMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF---AGLNR-------------YRIGDVLQVTGFYNRAPQFRFICRR 404 (565)
Q Consensus 341 ~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~---~GLyR-------------YriGDvV~v~gf~~~~P~i~F~gR~ 404 (565)
.+. |..|+.+||+|+.. .|.|+ |++||++++.. --.+.|+||.
T Consensus 370 ------------g~~-----~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~----~G~l~~~GR~ 428 (529)
T 2v7b_A 370 ------------GHA-----VPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLP----NGCYVYAGRS 428 (529)
T ss_dssp ------------SCB-----CCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEEEEEEG
T ss_pred ------------CCC-----CCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECC----CccEEEeCcc
Confidence 222 45899999999874 45554 89999998863 3478999999
Q ss_pred CceeeeeecccCHHHHHHHHHH
Q 044130 405 NVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 405 ~~~l~i~GEkl~e~~v~~av~~ 426 (565)
++++.+.|++++..+|+.++.+
T Consensus 429 dd~ik~~G~~v~p~eIE~~l~~ 450 (529)
T 2v7b_A 429 DDMLKVSGQYVSPVEVEMVLVQ 450 (529)
T ss_dssp GGCBC----CBCHHHHHHHHTT
T ss_pred CCeEEECCEEECHHHHHHHHHh
Confidence 9999999999999999999864
No 10
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=98.37 E-value=1e-06 Score=96.84 Aligned_cols=133 Identities=11% Similarity=0.088 Sum_probs=88.6
Q ss_pred CCCCceEEEEEecc---hhhhHHHHHHhcCCCCceecccccccceeee--ecCCCCCCCCCceeeecCCceeEEeeeCCC
Q 044130 260 WPRAKYIEAVVTGS---MAQYIPSLEYYSAGKLPLVGTMYASSECYFG--VNLKPLSNPADVSFTLLPNMCYFEFLPLGG 334 (565)
Q Consensus 260 WP~l~~i~~~~~G~---~~~y~~~l~~~~g~~~~~~~~~y~aSEg~~g--i~~~~~~~~~~~~~~l~p~~~ffEFip~~~ 334 (565)
+++ +..+++|| ....++++++.+++ ++++ ..||.||+... .+......+...+. .+|+. -.+.+++++
T Consensus 308 l~~---lr~i~~gG~~l~~~~~~~~~~~~~~-~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~i~d~~~ 380 (548)
T 2d1s_A 308 LSN---LVEIASGGAPLSKEVGEAVARRFNL-PGVR-QGYGLTETTSAIIITPEGDDKPGASGK-VVPLF-KAKVIDLDT 380 (548)
T ss_dssp CTT---CCEEEECSSCCCHHHHHHHHHHTTC-SCCE-EEEECGGGSSEEEECCTTCCCTTCCBE-ECTTC-EEEEECTTT
T ss_pred ccc---eeEEEEcCccCCHHHHHHHHHHcCC-Ccee-eccccccccceeeecCcccCCCCCCCc-cCCCc-eEEEEeCCc
Confidence 456 44455565 24566788888876 8888 99999997432 22111111122233 23432 345554332
Q ss_pred CCCccccccccccccCCCCceeeccCcccCCeEEEEeccc---ccee--------------eeecCCEEEEeeeeCCCCE
Q 044130 335 ENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF---AGLN--------------RYRIGDVLQVTGFYNRAPQ 397 (565)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~---~GLy--------------RYriGDvV~v~gf~~~~P~ 397 (565)
.+. +..|+.+||+|+.. .|.| .|+|||++++.. --.
T Consensus 381 ------------------~~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG~ 433 (548)
T 2d1s_A 381 ------------------KKS-----LGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDE----EKH 433 (548)
T ss_dssp ------------------CCB-----CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCC
T ss_pred ------------------Ccc-----CCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEEEcC----CCe
Confidence 222 45899999999874 2332 499999999863 236
Q ss_pred EEEEeecCceeeeeecccCHHHHHHHHHH
Q 044130 398 FRFICRRNVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 398 i~F~gR~~~~l~i~GEkl~e~~v~~av~~ 426 (565)
+.|+||.++++.+.|++++..+|++++.+
T Consensus 434 l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 462 (548)
T 2d1s_A 434 FFIVDRLKSLIKYKGYQVPPAELESVLLQ 462 (548)
T ss_dssp EEEEEEGGGCBCBTTCCBCHHHHHHHHHT
T ss_pred EEEeccccceEEECCEEECHHHHHHHHHh
Confidence 89999999999999999999999999965
No 11
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=98.37 E-value=3.6e-06 Score=92.03 Aligned_cols=133 Identities=11% Similarity=0.087 Sum_probs=88.2
Q ss_pred CCCCceEEEEEecc---hhhhHHHHHHhcCCCCceecccccccceee--eecCC----C-CCCCCCceeeecCCceeEEe
Q 044130 260 WPRAKYIEAVVTGS---MAQYIPSLEYYSAGKLPLVGTMYASSECYF--GVNLK----P-LSNPADVSFTLLPNMCYFEF 329 (565)
Q Consensus 260 WP~l~~i~~~~~G~---~~~y~~~l~~~~g~~~~~~~~~y~aSEg~~--gi~~~----~-~~~~~~~~~~l~p~~~ffEF 329 (565)
.++ +..+++|| .....+++++.+++ ++++ ..||.||+.. +.+.. + ...++..+. .+|+. -.+.
T Consensus 296 l~~---lr~i~~gGe~l~~~~~~~~~~~~~~-~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~-~~~i 368 (536)
T 3ni2_A 296 LSS---LRMIKSGGAPLGKELEDTVRAKFPQ-ARLG-QGYGMTEAGPVLAMCLAFAKEPFDIKPGACGT-VVRNA-EMKI 368 (536)
T ss_dssp CTT---CCEEEEESSCCCHHHHHHHHHHCTT-SEEE-EEEECGGGSSEEEECGGGSSSCCCCCTTCCCE-ECSSC-EEEE
T ss_pred Ccc---ceEEEECCCCCCHHHHHHHHHHCCC-CCcc-ccccccccchhhhcccccCCccccCCCCCeeE-eCCCc-EEEE
Confidence 466 44555665 23556778788876 8888 9999999842 22211 1 111112232 23333 3455
Q ss_pred eeCCCCCCccccccccccccCCCCceeeccCcccCCeEEEEeccc---ccee--------------eeecCCEEEEeeee
Q 044130 330 LPLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF---AGLN--------------RYRIGDVLQVTGFY 392 (565)
Q Consensus 330 ip~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~---~GLy--------------RYriGDvV~v~gf~ 392 (565)
++.++ .+. +..|+.+||+|+.. .|.| .|+|||++++..
T Consensus 369 ~d~~~------------------~~~-----~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~TGDl~~~~~-- 423 (536)
T 3ni2_A 369 VDPET------------------GAS-----LPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDD-- 423 (536)
T ss_dssp ECTTT------------------CCB-----CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT--
T ss_pred EeCCC------------------CcC-----CCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEcccEEEEcC--
Confidence 55332 222 45899999999854 3433 299999999853
Q ss_pred CCCCEEEEEeecCceeeeeecccCHHHHHHHHHH
Q 044130 393 NRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 393 ~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~ 426 (565)
--.+.|+||.++++.+.|+++...+|+.++.+
T Consensus 424 --dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 455 (536)
T 3ni2_A 424 --DDELFIVDRLKELIKYKGFQVAPAELEALLIA 455 (536)
T ss_dssp --TSCEEEEEECSCCEEETTEEECHHHHHHHHHT
T ss_pred --CceEEEEecccceEEECCEEECHHHHHHHHHh
Confidence 34789999999999999999999999999865
No 12
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=98.37 E-value=8.4e-06 Score=88.34 Aligned_cols=133 Identities=15% Similarity=0.174 Sum_probs=86.3
Q ss_pred CCCCceEEEEEecch---hhhHHHHHHhcCCCCceecccccccceeeeecCCCCCCCCCceeeecCCceeEEeeeCCCCC
Q 044130 260 WPRAKYIEAVVTGSM---AQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTLLPNMCYFEFLPLGGEN 336 (565)
Q Consensus 260 WP~l~~i~~~~~G~~---~~y~~~l~~~~g~~~~~~~~~y~aSEg~~gi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~ 336 (565)
.++ +..+++||. ...++++++.+| ++++ ..||.||+.+.+.... ......+. ..|+. -...++.+..
T Consensus 271 l~~---lr~~~~gG~~l~~~~~~~~~~~~~--~~~~-~~YG~TE~~~~~~~~~-~~~~~~g~-p~~~~-~~~i~~~~~~- 340 (504)
T 1t5h_X 271 LDS---LRHVTFAGATMPDAVLETVHQHLP--GEKV-NIYGTTEAMNSLYMRQ-PKTGTEMA-PGFFS-EVRIVRIGGG- 340 (504)
T ss_dssp CTT---CCEEEECCTTCCHHHHHHHHHHCC--SEEE-EEEEETTTEEEEEEES-CSSSSEEB-CCTTC-CEEEECTTSC-
T ss_pred Ccc---ccEEEEcCCcCCHHHHHHHHHhcC--ccee-eeeccccccccccccC-CCCCcccc-CCCCC-ceeEEeccCC-
Confidence 456 455566662 355677777776 6777 8999999854432211 11111111 11221 2333332210
Q ss_pred CccccccccccccCCCCceeeccCcccCCeEEEEec-cc---cceee-------------eecCCEEEEeeeeCCCCEEE
Q 044130 337 GTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVT-TF---AGLNR-------------YRIGDVLQVTGFYNRAPQFR 399 (565)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViT-t~---~GLyR-------------YriGDvV~v~gf~~~~P~i~ 399 (565)
..+ .+..|+.+||+|+ .. .|.|+ |+|||++++.. --.+.
T Consensus 341 ---------------~~~-----~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~----dG~l~ 396 (504)
T 1t5h_X 341 ---------------VDE-----IVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTP----EGTVR 396 (504)
T ss_dssp ---------------TTC-----BCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECT----TSCEE
T ss_pred ---------------CCC-----cCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECC----CceEE
Confidence 012 2568999999998 32 46665 99999999873 23689
Q ss_pred EEeecCceeeeeecccCHHHHHHHHHH
Q 044130 400 FICRRNVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 400 F~gR~~~~l~i~GEkl~e~~v~~av~~ 426 (565)
|+||.++++.+.|+++...+|++++.+
T Consensus 397 ~~GR~dd~ik~~G~~v~p~eIE~~l~~ 423 (504)
T 1t5h_X 397 ILGRVDDMIISGGENIHPSEIERVLGT 423 (504)
T ss_dssp EEEEGGGCEEETTEEECHHHHHHHHTT
T ss_pred EeCcccCEEEECCEEECHHHHHHHHHh
Confidence 999999999999999999999999854
No 13
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=98.37 E-value=1.3e-06 Score=94.82 Aligned_cols=133 Identities=13% Similarity=0.111 Sum_probs=87.4
Q ss_pred cCCCCceEEEEEecch---hhhHHHHHHhcCCCCceecccccccceeeeecCC--CCCCCCCceeeecCCceeEEeeeCC
Q 044130 259 LWPRAKYIEAVVTGSM---AQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLK--PLSNPADVSFTLLPNMCYFEFLPLG 333 (565)
Q Consensus 259 lWP~l~~i~~~~~G~~---~~y~~~l~~~~g~~~~~~~~~y~aSEg~~gi~~~--~~~~~~~~~~~l~p~~~ffEFip~~ 333 (565)
..++ +..+++||. ....+++++.+| ++++ ..||.||+.+..... ....+...+. .+|+. -.+.++.+
T Consensus 266 ~~~~---lr~~~~gg~~l~~~~~~~~~~~~~--~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~G~-p~~~~-~~~i~d~~ 337 (503)
T 4fuq_A 266 TTGH---MRLFISGSAPLLADTHREWSAKTG--HAVL-ERYGMTETNMNTSNPYDGDRVPGAVGP-ALPGV-SARVTDPE 337 (503)
T ss_dssp TTTT---CCEEEECSSCCCHHHHHHHHHHHS--CCEE-ECCEETTTEECBCCCSSSCCCTTEEEE-BCTTC-EEEEECTT
T ss_pred chhh---cEEEEECCCCCCHHHHHHHHHHhC--CCcc-ceEcccccCcccccCCCCCCcCCcccc-CCCCe-EEEEEECC
Confidence 3566 445566662 345566666676 7787 899999986532111 1111111122 22332 34455433
Q ss_pred CCCCccccccccccccCCCCceeeccCcccCCeEEEEeccc---cceee--------------eecCCEEEEeeeeCCCC
Q 044130 334 GENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF---AGLNR--------------YRIGDVLQVTGFYNRAP 396 (565)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~---~GLyR--------------YriGDvV~v~gf~~~~P 396 (565)
+ .+. +..|+.+||+|+.. .|.|. |+|||++++.. --
T Consensus 338 ~------------------g~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~----dG 390 (503)
T 4fuq_A 338 T------------------GKE-----LPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDE----RG 390 (503)
T ss_dssp T------------------CCB-----CCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECT----TC
T ss_pred C------------------CCC-----CcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcC----CC
Confidence 2 222 45899999999864 44443 99999999853 34
Q ss_pred EEEEEeecCceeeeeecccCHHHHHHHHHH
Q 044130 397 QFRFICRRNVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 397 ~i~F~gR~~~~l~i~GEkl~e~~v~~av~~ 426 (565)
.+.|+||.++++.+.|+++...+|+.++.+
T Consensus 391 ~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 420 (503)
T 4fuq_A 391 YVHILGRGKDLVITGGFNVYPKEIESEIDA 420 (503)
T ss_dssp EEEECCSSTTCEEETTEEECHHHHHHHHHT
T ss_pred cEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence 899999999999999999999999999965
No 14
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=98.32 E-value=5.1e-06 Score=90.12 Aligned_cols=132 Identities=13% Similarity=0.176 Sum_probs=85.9
Q ss_pred cCCCCceEEEEEecc---hhhhHHHHHHhcCCCCceecccccccceeeee---cCCCC----CCCCCceeeecCCceeEE
Q 044130 259 LWPRAKYIEAVVTGS---MAQYIPSLEYYSAGKLPLVGTMYASSECYFGV---NLKPL----SNPADVSFTLLPNMCYFE 328 (565)
Q Consensus 259 lWP~l~~i~~~~~G~---~~~y~~~l~~~~g~~~~~~~~~y~aSEg~~gi---~~~~~----~~~~~~~~~l~p~~~ffE 328 (565)
..|++ ..+++|| .....+++++.+++ ++++ ..||.||+...+ ..... ......+.. .|+. -..
T Consensus 259 ~~~~l---r~~~~~G~~l~~~~~~~~~~~~~~-~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~-~~~~-~~~ 331 (512)
T 3fce_A 259 MLPNM---KTFLFCGEVLPNEVARKLIERFPK-ATIM-NTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYC-KSDC-RLL 331 (512)
T ss_dssp TSTTC---CEEEECSSCCCHHHHHHHHHHCTT-CEEE-EEECCGGGSSCSEEEECCHHHHHHCSSCCCEEE-CTTC-EEE
T ss_pred hCccc---cEEEEecCcCCHHHHHHHHHHCCC-CEEE-eCcccChhhhheeeEEeccccccccCCCccccc-cCCc-EEE
Confidence 45674 4445555 23566778788876 8888 999999975321 11100 000112221 2222 233
Q ss_pred eeeCCCCCCccccccccccccCCCCceeeccCcccCCeEEEEeccc---ccee-----------------eeecCCEEEE
Q 044130 329 FLPLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF---AGLN-----------------RYRIGDVLQV 388 (565)
Q Consensus 329 Fip~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~---~GLy-----------------RYriGDvV~v 388 (565)
.++.+ .+. +..|+.+||+|+.. .|.| -|+|||++++
T Consensus 332 i~d~~-------------------g~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~ 387 (512)
T 3fce_A 332 IMKED-------------------GTI-----APDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV 387 (512)
T ss_dssp EECSS-------------------SCB-----CCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE
T ss_pred EECCC-------------------CCC-----CCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe
Confidence 33321 222 45899999999853 3443 3999999987
Q ss_pred eeeeCCCCEEEEEeecCceeeeeecccCHHHHHHHHHH
Q 044130 389 TGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 389 ~gf~~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~ 426 (565)
. + -.+.|+||.++++.+.|++++..+|++++.+
T Consensus 388 ~---d--G~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~ 420 (512)
T 3fce_A 388 E---N--GLLFYNGRLDFQIKLHGYRMELEEIEHHLRA 420 (512)
T ss_dssp E---T--TEEEEEEEGGGCEEETTEEECHHHHHHHHHH
T ss_pred c---C--CEEEEecccCCEEEECCEEECHHHHHHHHHh
Confidence 3 3 3799999999999999999999999999976
No 15
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=98.31 E-value=7e-07 Score=96.88 Aligned_cols=130 Identities=12% Similarity=0.091 Sum_probs=67.8
Q ss_pred EEEEEecchhhhHHHHHHhcCCCCceecccccccceee-eecCCCCCCCCCceeeecCCceeEEeeeCCCCCCccccccc
Q 044130 266 IEAVVTGSMAQYIPSLEYYSAGKLPLVGTMYASSECYF-GVNLKPLSNPADVSFTLLPNMCYFEFLPLGGENGTLLSMEF 344 (565)
Q Consensus 266 i~~~~~G~~~~y~~~l~~~~g~~~~~~~~~y~aSEg~~-gi~~~~~~~~~~~~~~l~p~~~ffEFip~~~~~~~~~~~~~ 344 (565)
+..+.+|+....+.++++.+++ ++++ ..||.||+.. +........+...+.. +|+. -.+.++.+
T Consensus 274 lr~~~~~g~~~~~~~~~~~~~~-~~~~-~~YG~TE~~~~~~~~~~~~~~~~~G~p-~~~~-~~~i~d~~----------- 338 (509)
T 3ivr_A 274 LRAVTGLDTPETIERFEATCPN-ATFW-ATFGQSETSGLSTFAPYRDRPKSAGRP-LFWR-TVAVVDAE----------- 338 (509)
T ss_dssp CCEEEEECCHHHHHHHHHHCTT-CEEE-EEEEEGGGTEEEEEEEGGGSTTSCCEE-CTTC-EEEEECTT-----------
T ss_pred hheecccCChHHHHHHHHhcCC-CeEE-cccCccccccccccCccccCCCccccc-CCCc-EEEEECCC-----------
Confidence 4445566655667788888866 8888 9999999843 2111111111122332 3332 34455432
Q ss_pred cccccCCCCceeeccCcccCCeEEEEeccc---cceee-------------eecCCEEEEeeeeCCCCEEEEEeec--Cc
Q 044130 345 NEEEEVPNDKLVDLGHVRVGHYYELVVTTF---AGLNR-------------YRIGDVLQVTGFYNRAPQFRFICRR--NV 406 (565)
Q Consensus 345 ~~~~~~~~~~~v~l~eve~G~~YelViTt~---~GLyR-------------YriGDvV~v~gf~~~~P~i~F~gR~--~~ 406 (565)
.++ +..|+.+||+|+.. .|.|+ |+|||++++.. ...+.|+||. ++
T Consensus 339 --------~~~-----~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~d~~d 401 (509)
T 3ivr_A 339 --------DRP-----LPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDA----DGYLFYAGRAPEKE 401 (509)
T ss_dssp --------SCB-----CCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECT----TSCEEEEEEC----
T ss_pred --------CCC-----CCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECC----CceEEEeCCCCcce
Confidence 222 55899999999874 56665 99999999853 3469999999 99
Q ss_pred eeeeeecccCHHHHHHHHHHH
Q 044130 407 VLSIDNDKTNEEDLHKSVTIA 427 (565)
Q Consensus 407 ~l~i~GEkl~e~~v~~av~~~ 427 (565)
++.+.|+++...+|+.++.+.
T Consensus 402 ~ik~~G~~v~p~eiE~~l~~~ 422 (509)
T 3ivr_A 402 LIKTGGENVYPAEVEGALKQH 422 (509)
T ss_dssp ---------------------
T ss_pred eEEECCEEECHHHHHHHHHhC
Confidence 999999999999999999764
No 16
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=98.29 E-value=1.2e-06 Score=96.12 Aligned_cols=134 Identities=14% Similarity=0.149 Sum_probs=63.9
Q ss_pred CCCCceEEEEEecc---hhhhHHHHHHhcCCCCceecccccccceeeeecCCCCC--CCCCceeeecCCceeEEeeeCCC
Q 044130 260 WPRAKYIEAVVTGS---MAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLS--NPADVSFTLLPNMCYFEFLPLGG 334 (565)
Q Consensus 260 WP~l~~i~~~~~G~---~~~y~~~l~~~~g~~~~~~~~~y~aSEg~~gi~~~~~~--~~~~~~~~l~p~~~ffEFip~~~ 334 (565)
.++ +..+++|| ....++++++.+|. ..++ ..||.||+...+...+.. .+...+. .+|+. -.+.+++++
T Consensus 306 l~~---lr~i~~gG~~l~~~~~~~~~~~~~~-~~v~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-~~~~~-~~~i~d~~~ 378 (550)
T 3rix_A 306 LSN---LHEIASGGAPLSKEVGEAVAKRFHL-PGIR-QGYGLTETTSAILITPEGDDKPGAVGK-VVPFF-EAKVVDLDT 378 (550)
T ss_dssp CTT---CCEEEECSSCCCHHHHHHHHHHTTC-SCCE-EEEECGGGSSEEEECCTTCCCTTEEEE-ECTTC-EEEEECTTT
T ss_pred ccc---ccEEEEecCCCCHHHHHHHHHHcCC-Cccc-cccCcCccccceecCCCCCCCCCCccc-ccCCc-EEEEEeCCC
Confidence 466 44556666 23566777777874 3466 899999985432222211 1112222 23332 345555432
Q ss_pred CCCccccccccccccCCCCceeeccCcccCCeEEEEeccc---ccee--------------eeecCCEEEEeeeeCCCCE
Q 044130 335 ENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF---AGLN--------------RYRIGDVLQVTGFYNRAPQ 397 (565)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~---~GLy--------------RYriGDvV~v~gf~~~~P~ 397 (565)
.+. +..|+.+||+|+.. .|.| .|+|||++++.. --.
T Consensus 379 ------------------~~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~----dG~ 431 (550)
T 3rix_A 379 ------------------GKT-----LGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE----DEH 431 (550)
T ss_dssp ------------------CCB-----CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TCC
T ss_pred ------------------CcC-----CCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC----Cce
Confidence 222 45899999999864 3333 299999999863 247
Q ss_pred EEEEeecCceeeeeecccCHHHHHHHHHHH
Q 044130 398 FRFICRRNVVLSIDNDKTNEEDLHKSVTIA 427 (565)
Q Consensus 398 i~F~gR~~~~l~i~GEkl~e~~v~~av~~~ 427 (565)
+.|+||.++++.+.|+++...+|++++.+.
T Consensus 432 l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (550)
T 3rix_A 432 FFIVDRLKSLIKYKGYQVAPAELESILLQH 461 (550)
T ss_dssp EEEC--------------------------
T ss_pred EEEEecchheeEECCEEECHHHHHHHHHhC
Confidence 899999999999999999999999999763
No 17
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=98.22 E-value=1.2e-05 Score=87.32 Aligned_cols=131 Identities=12% Similarity=0.170 Sum_probs=82.3
Q ss_pred EEEEEecch---hhhHHHHHHhcCCCCceecccccccceeeeecCCCC--CCCCCceeeecCCceeEEeeeCCCCCCccc
Q 044130 266 IEAVVTGSM---AQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPL--SNPADVSFTLLPNMCYFEFLPLGGENGTLL 340 (565)
Q Consensus 266 i~~~~~G~~---~~y~~~l~~~~g~~~~~~~~~y~aSEg~~gi~~~~~--~~~~~~~~~l~p~~~ffEFip~~~~~~~~~ 340 (565)
+..+++||. .....++++.+| ++++ ..||.||+.+.....+. ..+...+. .+|+. -.+.++.+
T Consensus 274 lr~i~~gg~~l~~~~~~~~~~~~~--~~~~-~~YG~TE~~~~~~~~~~~~~~~~~vG~-p~~~~-~~~i~d~~------- 341 (505)
T 3nyq_A 274 ARLLVSGSAALPVHDHERIAAATG--RRVI-ERYGMTETLMNTSVRADGEPRAGTVGV-PLPGV-ELRLVEED------- 341 (505)
T ss_dssp CSEEEECSSCCCHHHHHHHHHHHS--CCCE-EEEEETTTEEEEECCTTSCCCTTCCCE-ECTTC-EEEEC----------
T ss_pred ceEEEECCCCCCHHHHHHHHHhcC--Ceee-cccchhhcccccccCCCCCCCCCCccc-CCCCC-EEEEECCC-------
Confidence 344566662 345566766665 7788 99999998653322221 11112222 22332 24444432
Q ss_pred cccccccccCCCCceeeccCcccCCeEEEEeccc---cceee--------------eecCCEEEEeeeeCCCCEEEEEee
Q 044130 341 SMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF---AGLNR--------------YRIGDVLQVTGFYNRAPQFRFICR 403 (565)
Q Consensus 341 ~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~---~GLyR--------------YriGDvV~v~gf~~~~P~i~F~gR 403 (565)
.+++. .+..|+.+||+|+.. .|.|. |||||++++.. --.+.|+||
T Consensus 342 ------------g~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~----dG~l~~~GR 403 (505)
T 3nyq_A 342 ------------GTPIA--ALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDP----DGYVRIVGR 403 (505)
T ss_dssp --------------CCC--CCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECT----TSCEEEEEE
T ss_pred ------------CCCcc--cCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECC----CccEEEeCC
Confidence 12221 133589999999864 34442 99999999863 246899999
Q ss_pred c-CceeeeeecccCHHHHHHHHHH
Q 044130 404 R-NVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 404 ~-~~~l~i~GEkl~e~~v~~av~~ 426 (565)
. ++++.+.|+++...+|+.++.+
T Consensus 404 ~~d~~ik~~G~~v~~~eIE~~l~~ 427 (505)
T 3nyq_A 404 KATDLIKSGGYKIGAGEIENALLE 427 (505)
T ss_dssp SSCCCEEETTEEECHHHHHHHHTT
T ss_pred ccCceEEeCCEEECHHHHHHHHHH
Confidence 7 5999999999999999999864
No 18
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=98.21 E-value=3.4e-06 Score=91.66 Aligned_cols=132 Identities=14% Similarity=0.156 Sum_probs=80.9
Q ss_pred CCCCceEEEEEecc---hhhhHHHHHHhcCCCCceecccccccceeeeecC---CC----CCCCCCceeeecCCceeEEe
Q 044130 260 WPRAKYIEAVVTGS---MAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNL---KP----LSNPADVSFTLLPNMCYFEF 329 (565)
Q Consensus 260 WP~l~~i~~~~~G~---~~~y~~~l~~~~g~~~~~~~~~y~aSEg~~gi~~---~~----~~~~~~~~~~l~p~~~ffEF 329 (565)
.|+ +..+++|| ......++.+.+++ ++++ ..||.||+.+.+.. .. .......+. .+|+. -...
T Consensus 263 ~~~---lr~~~~gG~~l~~~~~~~~~~~~~~-~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~vG~-p~~~~-~~~i 335 (521)
T 3l8c_A 263 MPA---LTHFYFDGEELTVSTARKLFERFPS-AKII-NAYGPTEATVALSAIEITREMVDNYTRLPIGY-PKPDS-PTYI 335 (521)
T ss_dssp CTT---CCEEEECSSCCCHHHHHHHHHHCTT-CEEE-EEECCGGGSSCSEEEEECHHHHHHCSSCEEEE-ECTTS-CEEE
T ss_pred Ccc---ceEEEEecccCCHHHHHHHHHHCCC-ceEE-eCcCccHHhhhhceeecccccccCCCcccccc-ccCCC-EEEE
Confidence 456 44455555 23556777777766 8888 99999997532111 00 000001222 22322 2334
Q ss_pred eeCCCCCCccccccccccccCCCCceeeccCcccCCeEEEEeccc---ccee-----------------eeecCCEEEEe
Q 044130 330 LPLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF---AGLN-----------------RYRIGDVLQVT 389 (565)
Q Consensus 330 ip~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~---~GLy-----------------RYriGDvV~v~ 389 (565)
++.+ .+ ++..|+.+||+|+.. .|.| -|+|||++++.
T Consensus 336 ~d~~-------------------g~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d 391 (521)
T 3l8c_A 336 IDED-------------------GK-----ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLT 391 (521)
T ss_dssp ECTT-------------------SC-----BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEC
T ss_pred ECCC-------------------cC-----CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEe
Confidence 4322 12 256899999999873 3443 29999999986
Q ss_pred eeeCCCCEEEEEeecCceeeeeecccCHHHHHHHHHH
Q 044130 390 GFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 390 gf~~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~ 426 (565)
. --.+.|+||.++++.+.|++++..+|++++.+
T Consensus 392 ~----dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~ 424 (521)
T 3l8c_A 392 E----DNILLYGGRLDFQIKYAGYRIELEDVSQQLNQ 424 (521)
T ss_dssp S----SSCEEEEEEGGGBCC-----CBHHHHHHHHHT
T ss_pred C----CCeEEEeCcccceEeECCEEeCHHHHHHHHHc
Confidence 3 23689999999999999999999999999965
No 19
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=98.20 E-value=3.1e-05 Score=86.98 Aligned_cols=228 Identities=11% Similarity=0.034 Sum_probs=117.8
Q ss_pred EEEEEecch---hhhHHHHHHhcC-CCCceecccccccceeeeecCC-CC---CCCCCceeeecCCceeEEeeeCCCCCC
Q 044130 266 IEAVVTGSM---AQYIPSLEYYSA-GKLPLVGTMYASSECYFGVNLK-PL---SNPADVSFTLLPNMCYFEFLPLGGENG 337 (565)
Q Consensus 266 i~~~~~G~~---~~y~~~l~~~~g-~~~~~~~~~y~aSEg~~gi~~~-~~---~~~~~~~~~l~p~~~ffEFip~~~~~~ 337 (565)
+..+++||. ..-+..+++.+| .+++++ ..||.||+...+-.. +. ..++..+. .+|+.. ...++.+
T Consensus 380 Lr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~s~G~-p~~g~~-v~i~d~~---- 452 (652)
T 1pg4_A 380 LRILGSVGEPINPEAWEWYWKKIGKEKCPVV-DTWWQTETGGFMITPLPGAIELKAGSATR-PFFGVQ-PALVDNE---- 452 (652)
T ss_dssp CCEEEEESSCCCHHHHHHHHHHTTTTCSCEE-EEBCCGGGSSCSBCCCTTTCCBCTTCCBS-BCTTCC-EEEECTT----
T ss_pred eEEEEEecCCCCHHHHHHHHHHhCCCCCcEE-ccccCcccccceecCCCCCcCccCCcccc-CcCCCe-EEEECCC----
Confidence 445555652 344566666665 337888 999999974321111 10 01111222 122221 2233211
Q ss_pred ccccccccccccCCCCceeeccCcccCCeEEEEeccc-----ccee----------------eeecCCEEEEeeeeCCCC
Q 044130 338 TLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF-----AGLN----------------RYRIGDVLQVTGFYNRAP 396 (565)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~-----~GLy----------------RYriGDvV~v~gf~~~~P 396 (565)
.+ .|..|+.+||+|+.. .|.| -|++||++++.. --
T Consensus 453 ---------------g~-----~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~y~TGDlg~~d~----dG 508 (652)
T 1pg4_A 453 ---------------GH-----PQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDE----DG 508 (652)
T ss_dssp ---------------CC-----BCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSEEEEEEEEECT----TS
T ss_pred ---------------CC-----CcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCEEECCcEEEEcC----CC
Confidence 22 245799999999872 2322 289999999863 23
Q ss_pred EEEEEeecCceeeeeecccCHHHHHHHHHHHHhhcccCCCeEEeEEEee-cCCCCCceeEEEEEEEecCCCCCCCChHHH
Q 044130 397 QFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYA-DTSTVPGHYVLYWEIQIVDSPALPLDHQKV 475 (565)
Q Consensus 397 ~i~F~gR~~~~l~i~GEkl~e~~v~~av~~~~~~l~~~g~~l~~f~~~~-d~~~~p~~Y~l~~e~e~~~~~~~~~~~~~~ 475 (565)
.+.|+||.++++++.|+++...+|+.+|.+. .+ |.+-.|.. +.......-+.|+.+.. +. ..+ .+.
T Consensus 509 ~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p~--V~ea~Vvg~~~~~~g~~l~a~Vv~~~-~~---~~~-~~~ 575 (652)
T 1pg4_A 509 YYWITGRVDDVLNVSGHRLGTAEIESALVAH------PK--IAEAAVVGIPHAIKGQAIYAYVTLNH-GE---EPS-PEL 575 (652)
T ss_dssp CEEEEEESSSEEEETTEEEEHHHHHHHHHHS------TT--EEEEEEEEEEETTTEEEEEEEEEECT-TC---CCC-HHH
T ss_pred cEEEEecCCCEEEECCEEECHHHHHHHHHhC------CC--cceEEEEEEEcCCCCeEEEEEEEECC-CC---CCC-HHH
Confidence 6899999999999999999999999999752 22 44555442 11111123346666642 11 122 222
Q ss_pred HHHHHHHHHHHhChHHHHhhccCCccCCeEEEEeC------CCcHHH--HHHHHHhcCCCCCCCCCCcccCCChHHHHHH
Q 044130 476 LEECCIAVEEQLDYVYRRCRSHDKSVGPLEIRVVE------PGTFET--LMDLLVSQGGSINQYKTPRCIKSNNAALMLL 547 (565)
Q Consensus 476 l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~------~gtf~~--~~~~~~~~G~~~~Q~K~Pr~~~~~~~~~~~L 547 (565)
.+++.+.+.+.| +.| ..|-.|.+|. .|-..+ +++.. .+. ..+.+.+--+. |++.++.+
T Consensus 576 ~~~l~~~l~~~l-~~~---------~~P~~i~~v~~lP~T~sGKi~R~~L~~~~--~~~-~~~~~~~~~l~-~p~~~~~~ 641 (652)
T 1pg4_A 576 YAEVRNWVRKEI-GPL---------ATPDVLHWTDSLPKTRSGKIMRRILRKIA--AGD-TSNLGDTSTLA-DPGVVEKL 641 (652)
T ss_dssp HHHHHHHHHHHT-CGG---------GCCSEEEECSCCCBCTTSCBCHHHHHHHH--HTC-----------C-CTTHHHHH
T ss_pred HHHHHHHHHHhC-CCC---------cCCeEEEEcCCCCCCCCccchHHHHHHHH--hCC-CCCCCCccccC-CHHHHHHH
Confidence 334444444444 111 2344555553 243333 22222 222 12455566676 88888887
Q ss_pred hccc
Q 044130 548 DSHV 551 (565)
Q Consensus 548 ~~~~ 551 (565)
.+.+
T Consensus 642 ~~~~ 645 (652)
T 1pg4_A 642 LEEK 645 (652)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
No 20
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=98.19 E-value=2e-06 Score=94.34 Aligned_cols=134 Identities=16% Similarity=0.233 Sum_probs=74.0
Q ss_pred CCCCceEEEEEecc---hhhhHHHHHHh----cC-CCCceecccccccceeeeecCCCC---CCCCCceeeecCCceeEE
Q 044130 260 WPRAKYIEAVVTGS---MAQYIPSLEYY----SA-GKLPLVGTMYASSECYFGVNLKPL---SNPADVSFTLLPNMCYFE 328 (565)
Q Consensus 260 WP~l~~i~~~~~G~---~~~y~~~l~~~----~g-~~~~~~~~~y~aSEg~~gi~~~~~---~~~~~~~~~l~p~~~ffE 328 (565)
|+. +..+++|| .....+++++. ++ .+++++ ..||.||+...+...+. ..+...+.. +|+. -.+
T Consensus 295 ~~~---lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p-~~~~-~~~ 368 (549)
T 3g7s_A 295 WSY---LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHN-QIWGMTEACPMVTTNPPLRLDKSTTQGVP-MSDI-ELK 368 (549)
T ss_dssp CTT---CCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEE-EEEECGGGSSEEEECCGGGGGGTTSCCEE-CTTC-EEE
T ss_pred ccc---eeEEEeCCccCCHHHHHHHHHHHHhhcCCcccccc-ceEeccccchhhhcCCccccCcCCCcccc-CCCC-EEE
Confidence 566 44555665 23445566555 44 236777 89999997432111110 111122332 3332 345
Q ss_pred eeeCCCCCCccccccccccccCCCCceeeccCcccCCeEEEEeccc---ccee------------------eeecCCEEE
Q 044130 329 FLPLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF---AGLN------------------RYRIGDVLQ 387 (565)
Q Consensus 329 Fip~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~---~GLy------------------RYriGDvV~ 387 (565)
.++.++ .+. |..|+.+||+|+.. .|.| .|||||+++
T Consensus 369 i~d~~~------------------g~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGDl~~ 425 (549)
T 3g7s_A 369 VISLED------------------GRE-----LGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGF 425 (549)
T ss_dssp EECSSS------------------CCE-----ECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEEEEE
T ss_pred EEeCCC------------------CcC-----CCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCcEEE
Confidence 555332 233 45899999999863 2332 699999999
Q ss_pred EeeeeCCCCEEEEEeecCceeeeeecccCHHHHHHHHHH
Q 044130 388 VTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 388 v~gf~~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~ 426 (565)
+.. --.+.|+||.++++.+.|+++...+|+.++.+
T Consensus 426 ~~~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 460 (549)
T 3g7s_A 426 IDE----EGFLHFQDRVKEVIKYKGYTIAPFELEALLMK 460 (549)
T ss_dssp ECT----TSCEEEEEEC------------CHHHHHHHTT
T ss_pred EcC----CceEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 863 34799999999999999999999999999864
No 21
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=98.16 E-value=5.2e-06 Score=91.75 Aligned_cols=131 Identities=11% Similarity=0.192 Sum_probs=84.6
Q ss_pred CCCCceEEEEEecc---hhhhHHHHHHhcCCCCceecccccccceeeeecCCC--CCCCCCceeeecCCceeEEeeeCCC
Q 044130 260 WPRAKYIEAVVTGS---MAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKP--LSNPADVSFTLLPNMCYFEFLPLGG 334 (565)
Q Consensus 260 WP~l~~i~~~~~G~---~~~y~~~l~~~~g~~~~~~~~~y~aSEg~~gi~~~~--~~~~~~~~~~l~p~~~ffEFip~~~ 334 (565)
.++++ .+++|| ....++++++.+| ++++ ..||.||+.+.....+ ...++..+.. +|+. -.+.++.+
T Consensus 321 ~~~lr---~i~~gGe~l~~~~~~~~~~~~g--~~i~-~~YG~TE~~~~~~~~~~~~~~~~~vG~p-~~~~-~v~i~d~~- 391 (570)
T 3c5e_A 321 FPHLQ---NCVTVGESLLPETLENWRAQTG--LDIR-ESYGQTETGLTCMVSKTMKIKPGYMGTA-ASCY-DVQIIDDK- 391 (570)
T ss_dssp CTTCC---EEEEESSCCCHHHHHHHHHHHS--CCCE-EEEEETTTEEEEECCTTSCCCTTCCCEE-CTTC-CEEEECTT-
T ss_pred cccce---EEEEcCCcCCHHHHHHHHHHhC--Cchh-hccchhhcccceecCcccccCCCccccc-CCCc-eEEEECCC-
Confidence 46644 444454 2345567777675 7787 9999999854322211 1112222322 2332 24444422
Q ss_pred CCCccccccccccccCCCCceeeccCcccCCeEEEEec-----c---cccee-------------eeecCCEEEEeeeeC
Q 044130 335 ENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVT-----T---FAGLN-------------RYRIGDVLQVTGFYN 393 (565)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViT-----t---~~GLy-------------RYriGDvV~v~gf~~ 393 (565)
.++ |..|+.+||+|+ . ..|.| .|++||++++..
T Consensus 392 ------------------g~~-----~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg~~d~--- 445 (570)
T 3c5e_A 392 ------------------GNV-----LPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDE--- 445 (570)
T ss_dssp ------------------SCB-----CCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEEEECT---
T ss_pred ------------------CCC-----CCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeEEEcC---
Confidence 222 458999999997 2 13443 289999998863
Q ss_pred CCCEEEEEeecCceeeeeecccCHHHHHHHHHH
Q 044130 394 RAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 394 ~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~ 426 (565)
--.+.|+||.++++.+.|+++...+|+.++.+
T Consensus 446 -dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~ 477 (570)
T 3c5e_A 446 -DGYFQFMGRADDIINSSGYRIGPSEVENALME 477 (570)
T ss_dssp -TSCEEEEEEGGGCEEETTEEECHHHHHHHHHT
T ss_pred -CceEEEEecCCCEEEECCEEECHHHHHHHHHh
Confidence 23689999999999999999999999999965
No 22
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=98.16 E-value=2e-06 Score=94.56 Aligned_cols=63 Identities=19% Similarity=0.367 Sum_probs=31.7
Q ss_pred cccCCeEEEEeccc---ccee---------------eeecCCEEEEeeeeCCCCEEEEEeecCceeeeeecccCHHHHHH
Q 044130 361 VRVGHYYELVVTTF---AGLN---------------RYRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHK 422 (565)
Q Consensus 361 ve~G~~YelViTt~---~GLy---------------RYriGDvV~v~gf~~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~ 422 (565)
|..|+.+||+|... .|.| .|++||++++.. --.+.|+||.++++.+.|+++...+|++
T Consensus 369 ~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~----dG~l~~~GR~dd~Ik~~G~~v~p~eIE~ 444 (562)
T 3ite_A 369 VKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDA----DSSILFLGRKDEQVKVRGQRLELGEVSE 444 (562)
T ss_dssp CCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECT----TSCEEEEEEC------------------
T ss_pred CCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcC----CCeEEEEccccCEEeECcEEECHHHHHH
Confidence 56899999999764 3444 499999999853 2478999999999999999999999999
Q ss_pred HHHHH
Q 044130 423 SVTIA 427 (565)
Q Consensus 423 av~~~ 427 (565)
++.+.
T Consensus 445 ~l~~~ 449 (562)
T 3ite_A 445 VIRSL 449 (562)
T ss_dssp -----
T ss_pred HHHhc
Confidence 99764
No 23
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=98.11 E-value=2.6e-06 Score=93.41 Aligned_cols=133 Identities=14% Similarity=0.099 Sum_probs=66.5
Q ss_pred CCCCceEEEEEecc---hhhhHHHHHHhcCCCCceecccccccceeeeecCCCCCC---CCCceeeecCCceeEEeeeCC
Q 044130 260 WPRAKYIEAVVTGS---MAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSN---PADVSFTLLPNMCYFEFLPLG 333 (565)
Q Consensus 260 WP~l~~i~~~~~G~---~~~y~~~l~~~~g~~~~~~~~~y~aSEg~~gi~~~~~~~---~~~~~~~l~p~~~ffEFip~~ 333 (565)
.++| ..+++|| .....+++++.+| ++++ ..||.||+.+......... ....+..+.++. -.+.++.+
T Consensus 306 ~~~l---r~i~~gG~~l~~~~~~~~~~~~~--~~~~-~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~-~~~i~d~~ 378 (544)
T 3o83_A 306 IQSL---KLLQVGGASFPESLARQVPEVLN--CKLQ-QVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDD-EIKIVDEQ 378 (544)
T ss_dssp HTTC---CEEEEESSCCCHHHHTHHHHHHC--SEEE-EEEECTTSCEEECCTTSCHHHHHHCCCEESCTTC-EEEEECTT
T ss_pred CCcc---eEEEEcCCCCCHHHHHHHHHHhC--CcEE-eeeccccccceeecCCCchhhccCCCceecCCCc-EEEEECCC
Confidence 4564 4445555 2355667777775 7888 9999999865432211100 011233322332 34444421
Q ss_pred CCCCccccccccccccCCCCceeeccCcccCCeEEEEeccc---ccee--------------eeecCCEEEEeeeeCCCC
Q 044130 334 GENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF---AGLN--------------RYRIGDVLQVTGFYNRAP 396 (565)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~---~GLy--------------RYriGDvV~v~gf~~~~P 396 (565)
.+. |..|+.+||+|+.. .|.| .|+|||++++.. --
T Consensus 379 -------------------~~~-----~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----dG 430 (544)
T 3o83_A 379 -------------------YRE-----VPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTP----DG 430 (544)
T ss_dssp -------------------SCB-----CCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECT----TS
T ss_pred -------------------CCC-----CCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcC----CC
Confidence 222 45899999999874 3433 299999999863 24
Q ss_pred EEEEEeecCceeeeeecccCHHHHHHHHHHH
Q 044130 397 QFRFICRRNVVLSIDNDKTNEEDLHKSVTIA 427 (565)
Q Consensus 397 ~i~F~gR~~~~l~i~GEkl~e~~v~~av~~~ 427 (565)
.+.|+||.++++.+.|++++..+|++++.+.
T Consensus 431 ~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~ 461 (544)
T 3o83_A 431 NLRVVGRIKDQINRGGEKIASEEIEKLILLH 461 (544)
T ss_dssp CEEEEEEEC----------------------
T ss_pred CEEEEeecCCEEEeCCEEECHHHHHHHHHhC
Confidence 7899999999999999999999999999764
No 24
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=98.11 E-value=9.1e-06 Score=90.54 Aligned_cols=133 Identities=11% Similarity=0.108 Sum_probs=86.1
Q ss_pred cCCCCceEEEEEecc---hhhhHHHHHHhcCCCCceecccccccceeeeecCCCCCC---CCCceeeecCCceeEEeeeC
Q 044130 259 LWPRAKYIEAVVTGS---MAQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSN---PADVSFTLLPNMCYFEFLPL 332 (565)
Q Consensus 259 lWP~l~~i~~~~~G~---~~~y~~~l~~~~g~~~~~~~~~y~aSEg~~gi~~~~~~~---~~~~~~~l~p~~~ffEFip~ 332 (565)
-.++ +..+++|| .....+++++.+| ++++ ..||.||+.+......... ....+..+.++. -...++.
T Consensus 300 ~l~~---lr~i~~gGe~l~~~~~~~~~~~~~--~~~~-~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~-~~~i~d~ 372 (617)
T 3rg2_A 300 QLAS---LKLLQVGGARLSATLAARIPAEIG--CQLQ-QVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDD-EVWVADA 372 (617)
T ss_dssp TTTT---CCEEEEESSCCCHHHHHHHHHHTC--SEEE-EEEEETTEEEEECCTTSCHHHHHHCCCEESCTTC-EEEEECT
T ss_pred cCCC---ccEEEEcCCcCCHHHHHHHHHHhC--CcEE-EEeccCcceeecccCCCcccccccCCCccCCCCc-eEEEECC
Confidence 3566 44555666 2345566766665 7888 9999999865432211100 001133322322 2233331
Q ss_pred CCCCCccccccccccccCCCCceeeccCcccCCeEEEEeccc---cceee--------------eecCCEEEEeeeeCCC
Q 044130 333 GGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF---AGLNR--------------YRIGDVLQVTGFYNRA 395 (565)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~---~GLyR--------------YriGDvV~v~gf~~~~ 395 (565)
+ .++ +..|+.+||+|+.. .|.|. |||||++++.. -
T Consensus 373 ~-------------------~~~-----~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~----d 424 (617)
T 3rg2_A 373 E-------------------GNP-----LPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDP----E 424 (617)
T ss_dssp T-------------------SCB-----CCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECT----T
T ss_pred C-------------------CCC-----CCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcC----C
Confidence 1 223 45899999999864 34332 99999999863 2
Q ss_pred CEEEEEeecCceeeeeecccCHHHHHHHHHH
Q 044130 396 PQFRFICRRNVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 396 P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~ 426 (565)
-.+.|+||.++++.++|+++...+|+.++.+
T Consensus 425 G~l~~~GR~dd~iki~G~ri~~~eIE~~l~~ 455 (617)
T 3rg2_A 425 GYITVQGREKDQINRGGEKIAAEEIENLLLR 455 (617)
T ss_dssp SCEEEEEECSSEEEETTEEEEHHHHHHHHTT
T ss_pred ceEEEEeecCCEEEECCEEeCHHHHHHHHHh
Confidence 4799999999999999999999999999865
No 25
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=98.11 E-value=4.2e-06 Score=91.63 Aligned_cols=131 Identities=13% Similarity=0.120 Sum_probs=85.0
Q ss_pred CCCCceEEEEEecch---hhhHHHHHHhcCCCCceecccccccceeeeecCCCCCCC----CCceeeecCCceeEEeeeC
Q 044130 260 WPRAKYIEAVVTGSM---AQYIPSLEYYSAGKLPLVGTMYASSECYFGVNLKPLSNP----ADVSFTLLPNMCYFEFLPL 332 (565)
Q Consensus 260 WP~l~~i~~~~~G~~---~~y~~~l~~~~g~~~~~~~~~y~aSEg~~gi~~~~~~~~----~~~~~~l~p~~~ffEFip~ 332 (565)
.++| ..+++||. ...++++++.+| ++++ ..||.||+.+...... .+. ...|.. +++..-...++.
T Consensus 297 l~~l---r~~~~gG~~l~~~~~~~~~~~~~--~~~~-~~YG~TE~~~~~~~~~-~~~~~~~~~~G~p-~~~~~~~~i~d~ 368 (539)
T 1mdb_A 297 LSSL---QVLQVGGAKFSAEAARRVKAVFG--CTLQ-QVFGMAEGLVNYTRLD-DPEEIIVNTQGKP-MSPYDESRVWDD 368 (539)
T ss_dssp CTTC---CEEEEESSCCCHHHHTTHHHHTC--SEEE-EEEECTTSCEEECCTT-SCHHHHHHCCCEE-SSTTCEEEEECT
T ss_pred ccce---eEEEEcCCCCCHHHHHHHHHHhC--CcEE-EEEcCCCCcccccCCC-CcHHhcCCCCCcc-cCCCceEEEECC
Confidence 3664 45555652 345566666675 7887 9999999866543211 100 112322 222222334432
Q ss_pred CCCCCccccccccccccCCCCceeeccCcccCCeEEEEeccc---ccee--------------eeecCCEEEEeeeeCCC
Q 044130 333 GGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF---AGLN--------------RYRIGDVLQVTGFYNRA 395 (565)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~---~GLy--------------RYriGDvV~v~gf~~~~ 395 (565)
+ .+ .|..|+.+||+|+.. .|.| .|+|||++++.. -
T Consensus 369 ~-------------------~~-----~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~----d 420 (539)
T 1mdb_A 369 H-------------------DR-----DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTR----D 420 (539)
T ss_dssp T-------------------SC-----BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECT----T
T ss_pred C-------------------CC-----CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECC----C
Confidence 1 22 255899999999864 2332 399999999863 2
Q ss_pred CEEEEEeecCceeeeeecccCHHHHHHHHHH
Q 044130 396 PQFRFICRRNVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 396 P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~ 426 (565)
-.+.|+||.++++.+.|+++...+|++++.+
T Consensus 421 G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~ 451 (539)
T 1mdb_A 421 GYIVVEGRAKDQINRGGEKVAAEEVENHLLA 451 (539)
T ss_dssp SCEEEEEEGGGCEECSSCEECHHHHHHHHTT
T ss_pred CcEEEeccccceEEECCEEECHHHHHHHHHh
Confidence 3699999999999999999999999999954
No 26
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=98.08 E-value=5.5e-05 Score=85.23 Aligned_cols=230 Identities=12% Similarity=0.089 Sum_probs=117.1
Q ss_pred EEEEEecch---hhhHHHHHHhcC-CCCceecccccccceee--eecCC-C--CCCCCCceeeecCCceeEEeeeCCCCC
Q 044130 266 IEAVVTGSM---AQYIPSLEYYSA-GKLPLVGTMYASSECYF--GVNLK-P--LSNPADVSFTLLPNMCYFEFLPLGGEN 336 (565)
Q Consensus 266 i~~~~~G~~---~~y~~~l~~~~g-~~~~~~~~~y~aSEg~~--gi~~~-~--~~~~~~~~~~l~p~~~ffEFip~~~~~ 336 (565)
+.++++||. ...+..+++.+| .+++++ ..||.||+.. ..+.. . ...++..+.. +|+. -.+.++.++
T Consensus 386 Lr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~-~~YG~TE~~~~~~~~~~~~~~~~~~gs~G~p-~~g~-~v~i~d~~~-- 460 (663)
T 1ry2_A 386 LRCLGSVGEPIAAEVWEWYSEKIGKNEIPIV-DTYWQTESGSHLVTPLAGGVTPMKPGSASFP-FFGI-DAVVLDPNT-- 460 (663)
T ss_dssp CCEEEECSSCCCHHHHHHHHHTTSCSSSCEE-ECBCCTTTCSCSEECCTTTCCCCCTTCCCEE-CTTC-CEEEECSSS--
T ss_pred eEEEEEEcCCCCHHHHHHHHHHhCCCCceEE-EeECCccccCeeeccCCCCCcccCCCccccC-cCCC-eEEEEcCCC--
Confidence 555666662 344566666665 338888 9999999742 22211 0 0111222332 2322 233443211
Q ss_pred CccccccccccccCCCCceeeccCccc-CCeEEEEeccc-----ccee----------------eeecCCEEEEeeeeCC
Q 044130 337 GTLLSMEFNEEEEVPNDKLVDLGHVRV-GHYYELVVTTF-----AGLN----------------RYRIGDVLQVTGFYNR 394 (565)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~v~l~eve~-G~~YelViTt~-----~GLy----------------RYriGDvV~v~gf~~~ 394 (565)
.+. |.. |+.+||+|+.. .|.| .|++||++++.. +
T Consensus 461 ----------------g~~-----v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~y~TGDlg~~d~--d- 516 (663)
T 1ry2_A 461 ----------------GEE-----LNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDK--D- 516 (663)
T ss_dssp ----------------TTC-----EECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTSEEEEEEEEECT--T-
T ss_pred ----------------CCc-----CCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCEEEcCCEEEEcC--C-
Confidence 222 335 89999999873 2332 399999999863 2
Q ss_pred CCEEEEEeecCceeeeeecccCHHHHHHHHHHHHhhcccCCCeEEeEEEeecCC-CCCceeEEEEEEEecCCCCCCC-Ch
Q 044130 395 APQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTS-TVPGHYVLYWEIQIVDSPALPL-DH 472 (565)
Q Consensus 395 ~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~~~~~l~~~g~~l~~f~~~~d~~-~~p~~Y~l~~e~e~~~~~~~~~-~~ 472 (565)
-.+.|+||.++++++.|+++...+|+.+|.+. . .|.+..|..... .....-+.|+.+.. +...... +
T Consensus 517 -G~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~------p--~V~ea~Vvg~~~~~~g~~~~a~Vv~~~-~~~~~~~~~- 585 (663)
T 1ry2_A 517 -GYIWILGRVDDVVNVSGHRLSTAEIEAAIIED------P--IVAECAVVGFNDDLTGQAVAAFVVLKN-KSSWSTATD- 585 (663)
T ss_dssp -CCEEECSCTTSCBCSSSCCBCHHHHHHHHHSS------T--TEEEEEEECCCCCTTSCCCEEEEEEC------------
T ss_pred -CCEEEEeecCCEEEECCEEcCHHHHHHHHHhC------C--CcceEEEEEEecCCCCeEEEEEEEEcC-CCccccccc-
Confidence 36899999999999999999999999999642 2 245655543211 11123346666542 1100001 0
Q ss_pred H---HHHHHHHHHHHHHhChHHHHhhccCCccCCeEEEEeC------CCcHHHHHHHHHhcCCCC--CCCCCCcccCCCh
Q 044130 473 Q---KVLEECCIAVEEQLDYVYRRCRSHDKSVGPLEIRVVE------PGTFETLMDLLVSQGGSI--NQYKTPRCIKSNN 541 (565)
Q Consensus 473 ~---~~l~~~~~~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~------~gtf~~~~~~~~~~G~~~--~Q~K~Pr~~~~~~ 541 (565)
. +..+++.+.+.+.| ..-..|-+|.+|+ .|-..+ ..+.+-... .+.+.+..+. |+
T Consensus 586 ~~~~~l~~~l~~~l~~~L----------~~~~~P~~i~~v~~lP~T~sGKi~R---~~L~~~~~~~~~~~~~~~~l~-~p 651 (663)
T 1ry2_A 586 DELQDIKKHLVFTVRKDI----------GPFAAPKLIILVDDLPKTRSGKIMR---RILRKILAGESDQLGDVSTLS-NP 651 (663)
T ss_dssp --CCSHHHHHHHHHHHHT----------CTTTSCSEEEECSCCCBCTTSCBCH---HHHHHSCC--------------CC
T ss_pred hhHHHHHHHHHHHHHHhC----------CCCcCCeEEEEcCCCCCCCccCchH---HHHHHHHcCCCCCCCCccccc-CH
Confidence 0 11233333333333 0123455666654 244333 222211111 2567777787 89
Q ss_pred HHHHHHhc
Q 044130 542 AALMLLDS 549 (565)
Q Consensus 542 ~~~~~L~~ 549 (565)
+.++.+.+
T Consensus 652 ~~~~~~~~ 659 (663)
T 1ry2_A 652 GIVRHLID 659 (663)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988865
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=98.06 E-value=8.3e-06 Score=89.79 Aligned_cols=63 Identities=16% Similarity=0.130 Sum_probs=52.4
Q ss_pred CcccCCeEEEEeccc---ccee----------------------eeecCCEEEEeeeeCCCCEEEEEeecCceeeeeecc
Q 044130 360 HVRVGHYYELVVTTF---AGLN----------------------RYRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDK 414 (565)
Q Consensus 360 eve~G~~YelViTt~---~GLy----------------------RYriGDvV~v~gf~~~~P~i~F~gR~~~~l~i~GEk 414 (565)
.+..|+.+||+|+.. .|.| .|+|||++++.. + .+.|+||.++++.+.|++
T Consensus 393 ~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~dd---G--~l~~~GR~dd~Ik~~G~~ 467 (590)
T 3kxw_A 393 PCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLHE---N--ELYVTGRIKDLIIIYGKN 467 (590)
T ss_dssp BCCTTBCEEEEEESTTSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEET---T--EEEEEEESSCHHHHHHHT
T ss_pred CCCCCCEEEEEEeCCcccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEEC---C--EEEEEcCccceEEECCEe
Confidence 466899999999873 3332 699999998762 2 599999999999999999
Q ss_pred cCHHHHHHHHHHH
Q 044130 415 TNEEDLHKSVTIA 427 (565)
Q Consensus 415 l~e~~v~~av~~~ 427 (565)
+...+|+.++...
T Consensus 468 v~p~eIE~~l~~~ 480 (590)
T 3kxw_A 468 HYPQDIEFSLMHS 480 (590)
T ss_dssp THHHHHHHHHHHS
T ss_pred cCHHHHHHHHHhc
Confidence 9999999999553
No 28
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=98.05 E-value=6.2e-06 Score=85.88 Aligned_cols=61 Identities=16% Similarity=0.249 Sum_probs=48.8
Q ss_pred cccCCeEEEEeccc---cceeeeecCCEEEEeeeeCCCCEEEEEeecCceeeeeecccCHHHHHHHHHHHH
Q 044130 361 VRVGHYYELVVTTF---AGLNRYRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIAK 428 (565)
Q Consensus 361 ve~G~~YelViTt~---~GLyRYriGDvV~v~gf~~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~~~ 428 (565)
+..+++.|+++... .| -|++||++++.. + .+.|+||.++++++.|++++..+|++++....
T Consensus 210 ~~~~~~Gel~~~g~~~~~g--~~~TGDlg~~d~--~---g~~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~ 273 (358)
T 4gs5_A 210 YGVDERGCLHISGAVTNGQ--TVQTNDLVEIHG--N---AFQWIGRADNVINSGGVKIVLDQIDQRIAAVF 273 (358)
T ss_dssp EEECTTSEEEEESGGGTTC--CEEEEEEEEECS--S---EEEEEEEGGGEEEETTEEEEHHHHHHHHHHHH
T ss_pred EEecCcCceEEecccccCc--ceecCCcccccc--C---ceEEcccccCeEEECCEEECHHHHHHHHHHhc
Confidence 44566778887643 33 378999999875 3 27899999999999999999999999886643
No 29
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=98.03 E-value=5.5e-05 Score=82.32 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=50.4
Q ss_pred ccCCeEEEEeccc---cceee-------------eecCCEEEEeeeeCCCCEEEEEeecCceeeeeecccCHHHHHHHHH
Q 044130 362 RVGHYYELVVTTF---AGLNR-------------YRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVT 425 (565)
Q Consensus 362 e~G~~YelViTt~---~GLyR-------------YriGDvV~v~gf~~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~ 425 (565)
..| .+||+|+.. .|.|. |+|||++++.. --.+.|+||.++++.+.|+++...+|+.++.
T Consensus 359 ~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~----dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~ 433 (517)
T 3r44_A 359 EHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDD----EGYLYIKDRLKDMIISGGENVYPAEIESVII 433 (517)
T ss_dssp SSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECT----TSCEEEEECGGGCEEETTEEECHHHHHHHHT
T ss_pred CCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcC----CeeEEEecCCcCEEEECCEEECHHHHHHHHH
Confidence 356 799999874 45553 99999999863 2478999999999999999999999999986
Q ss_pred H
Q 044130 426 I 426 (565)
Q Consensus 426 ~ 426 (565)
+
T Consensus 434 ~ 434 (517)
T 3r44_A 434 G 434 (517)
T ss_dssp T
T ss_pred h
Confidence 4
No 30
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=98.00 E-value=1.6e-05 Score=86.96 Aligned_cols=62 Identities=11% Similarity=0.035 Sum_probs=52.5
Q ss_pred cccCCeEEEEeccc---cceee-------------eecCCEEEEeeeeCCCCEEEEEeecCceeeeeecccCHHHHHHHH
Q 044130 361 VRVGHYYELVVTTF---AGLNR-------------YRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSV 424 (565)
Q Consensus 361 ve~G~~YelViTt~---~GLyR-------------YriGDvV~v~gf~~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av 424 (565)
+..|+.+||+|... .|.|+ |+|||++++ . + -.+.|+||.++++.+.|+++...+|+.++
T Consensus 406 ~~~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~--d--G~l~~~GR~dd~ik~~G~~v~p~eIE~~l 480 (576)
T 3gqw_A 406 VAERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-L--D--GYLYVTGRIKDLIIIRGRNIWPQDIEYIA 480 (576)
T ss_dssp CCTTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-E--T--TEEEEEEETTTCEEETTEEECHHHHHHHH
T ss_pred CCCCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-E--C--CEEEEEecCcceEEECCEEECHHHHHHHH
Confidence 45899999999864 45554 999999987 3 3 37999999999999999999999999998
Q ss_pred HHH
Q 044130 425 TIA 427 (565)
Q Consensus 425 ~~~ 427 (565)
.+.
T Consensus 481 ~~~ 483 (576)
T 3gqw_A 481 EQE 483 (576)
T ss_dssp TTS
T ss_pred HhC
Confidence 653
No 31
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=97.99 E-value=9.8e-06 Score=90.65 Aligned_cols=133 Identities=15% Similarity=0.134 Sum_probs=83.0
Q ss_pred CCCCceEEEEEecch--h-hhHHHHHHhcCCCCceecccccccceeeeec---CCCC---CCCCCceeeecCCceeEEee
Q 044130 260 WPRAKYIEAVVTGSM--A-QYIPSLEYYSAGKLPLVGTMYASSECYFGVN---LKPL---SNPADVSFTLLPNMCYFEFL 330 (565)
Q Consensus 260 WP~l~~i~~~~~G~~--~-~y~~~l~~~~g~~~~~~~~~y~aSEg~~gi~---~~~~---~~~~~~~~~l~p~~~ffEFi 330 (565)
.++| ..+++||. . .-..++.+.+++ ++++ ..||.||+.+... ..+. ..+...|. .+|+. -...+
T Consensus 275 l~~l---r~v~~gGe~l~~~~~~~~~~~~~~-~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~-p~~~~-~~~i~ 347 (620)
T 4dg8_A 275 LGGL---RQLLTGGDILSVPHVRRALLRHPR-LHLV-NGYGPTENTTFTCCHVVTDDDLEEDDIPIGK-AIAGT-AVLLL 347 (620)
T ss_dssp GTTC---SEEEEESSCCCHHHHHHHHHHCTT-CEEE-EEECCGGGCSCSEEEECCTGGGGSSSCCCBE-ECTTE-EEEEE
T ss_pred CCCc---cEEEEEeCcCCHHHHHHHHHhCCC-eEEE-eeEchhhhhhheEEEeccccccCCCCCCcee-cccCc-EEEEE
Confidence 4564 44555662 2 344555455555 8888 9999999753211 1110 00111122 12322 23344
Q ss_pred eCCCCCCccccccccccccCCCCceeeccCcccCCeEEEEeccc---cce---------------------eeeecCCEE
Q 044130 331 PLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF---AGL---------------------NRYRIGDVL 386 (565)
Q Consensus 331 p~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~---~GL---------------------yRYriGDvV 386 (565)
+.+ ...+ +..|+.+||+|... .|. -.|||||++
T Consensus 348 d~~-------------------~~~~----~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~ 404 (620)
T 4dg8_A 348 DEH-------------------GQEI----AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRA 404 (620)
T ss_dssp CTT-------------------SCBC----CSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEE
T ss_pred Ccc-------------------CCCC----CCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEE
Confidence 322 1121 45899999999643 232 239999999
Q ss_pred EEeeeeCCCCEEEEEeecCceeeeeecccCHHHHHHHHHH
Q 044130 387 QVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 387 ~v~gf~~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~ 426 (565)
++.. --.+.|+||.++++.+.|+++...+|+.++.+
T Consensus 405 ~~~~----dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~ 440 (620)
T 4dg8_A 405 RYDE----QGRLRFIGRGDGQVKLNGYRLDLPALEQRFRR 440 (620)
T ss_dssp EECT----TSCEEEEECSSSEEEETTEEEEHHHHHHHHHT
T ss_pred EECC----CCeEEEEccCCCEEEECCEEcCHHHHHHHHHh
Confidence 9863 24799999999999999999999999999975
No 32
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=97.98 E-value=7.1e-05 Score=82.47 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=51.8
Q ss_pred cccCCeEEEEeccc---ccee--------------------eeecCCEEEEeeeeCCCCEEEEEeecCceeeeeecccCH
Q 044130 361 VRVGHYYELVVTTF---AGLN--------------------RYRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNE 417 (565)
Q Consensus 361 ve~G~~YelViTt~---~GLy--------------------RYriGDvV~v~gf~~~~P~i~F~gR~~~~l~i~GEkl~e 417 (565)
+..|+.+||+|+.. .|.| .|++||++++.. --.+.|+||.++++.+.|+++..
T Consensus 367 ~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~----dG~l~i~GR~~d~Ik~~G~~V~p 442 (563)
T 1amu_A 367 KSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS----DGNIEYLGRIDNQVKIRGHRVEL 442 (563)
T ss_dssp CCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT----TSCEEEEEEGGGEEEETTEEEEH
T ss_pred CCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC----CCeEEEeccccCEEEECCEEeCH
Confidence 45899999999874 3433 699999998863 23689999999999999999999
Q ss_pred HHHHHHHHH
Q 044130 418 EDLHKSVTI 426 (565)
Q Consensus 418 ~~v~~av~~ 426 (565)
.+|++++.+
T Consensus 443 ~eIE~~l~~ 451 (563)
T 1amu_A 443 EEVESILLK 451 (563)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 999999864
No 33
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=97.96 E-value=1.3e-05 Score=94.25 Aligned_cols=131 Identities=11% Similarity=0.117 Sum_probs=68.2
Q ss_pred EEEEEecc---hhhhHHHHHHhcCCCCceecccccccceee--eecCC----CC-CCCCCceeeecCCceeEEeeeCCCC
Q 044130 266 IEAVVTGS---MAQYIPSLEYYSAGKLPLVGTMYASSECYF--GVNLK----PL-SNPADVSFTLLPNMCYFEFLPLGGE 335 (565)
Q Consensus 266 i~~~~~G~---~~~y~~~l~~~~g~~~~~~~~~y~aSEg~~--gi~~~----~~-~~~~~~~~~l~p~~~ffEFip~~~~ 335 (565)
+..+++|| .....+++++.+++ ++++ ..||.||+.. ..+.. +. ..+...+. .+|+. -.+.+++++
T Consensus 346 lr~~~~gg~~l~~~~~~~~~~~~~~-~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~-p~~~~-~~~i~d~~~- 420 (979)
T 3tsy_A 346 IRVVKSGAAPLGKELEDAVNAKFPN-AKLG-QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGT-VVRNA-EMKIVDPDT- 420 (979)
T ss_dssp CCEEEESSCCCCSSHHHHHHHHCTT-CEEE-ECEECGGGCSEEEECGGGSSSCCCCCTTCCCE-ECSSC-EEEEECTTS-
T ss_pred eEEEEEcCCCCCHHHHHHHHHHCCC-CeEE-eeechhhhhHHHHhCCCCCCCccccCCCCcCc-ccCCc-EEEEEeCCC-
Confidence 45566666 23566778888876 8888 9999999853 22211 10 01111222 23333 345555332
Q ss_pred CCccccccccccccCCCCceeeccCcccCCeEEEEeccc---cceee--------------eecCCEEEEeeeeCCCCEE
Q 044130 336 NGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF---AGLNR--------------YRIGDVLQVTGFYNRAPQF 398 (565)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~---~GLyR--------------YriGDvV~v~gf~~~~P~i 398 (565)
.++ |..|+.+||+|+.. .|.|. |||||++++.. --.+
T Consensus 421 -----------------~~~-----~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDl~~~~~----dG~l 474 (979)
T 3tsy_A 421 -----------------GDS-----LSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDD----DDEL 474 (979)
T ss_dssp -----------------CCB-----CCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT----TSCE
T ss_pred -----------------CCC-----CCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEcCCEEEEcC----CceE
Confidence 222 45899999999854 34432 99999999863 2378
Q ss_pred EEEeecCceeeeeecccCHHHHHHHHHHH
Q 044130 399 RFICRRNVVLSIDNDKTNEEDLHKSVTIA 427 (565)
Q Consensus 399 ~F~gR~~~~l~i~GEkl~e~~v~~av~~~ 427 (565)
.|+||.++++.+.|+++...+|+.++.+.
T Consensus 475 ~~~GR~dd~ik~~G~~v~~~eIE~~l~~~ 503 (979)
T 3tsy_A 475 FIVDRLKELIKYKGFQVAPAELEALLIGH 503 (979)
T ss_dssp EEEEESCC---------------------
T ss_pred EEecCCCCEEEECCEEECHHHHHHHHHhC
Confidence 99999999999999999999999998763
No 34
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=97.96 E-value=9e-06 Score=89.64 Aligned_cols=133 Identities=15% Similarity=0.130 Sum_probs=63.0
Q ss_pred CCCCceEEEEEecch---hhhHHHHHHhcCCCCceecccccccceee--eec-CCCC---CCCCCceeeecCCceeEEee
Q 044130 260 WPRAKYIEAVVTGSM---AQYIPSLEYYSAGKLPLVGTMYASSECYF--GVN-LKPL---SNPADVSFTLLPNMCYFEFL 330 (565)
Q Consensus 260 WP~l~~i~~~~~G~~---~~y~~~l~~~~g~~~~~~~~~y~aSEg~~--gi~-~~~~---~~~~~~~~~l~p~~~ffEFi 330 (565)
.+.| ..+++||. ..-..++.+.+++ ++++ .+||.||+.. ..+ .... ......+.. +|+. -...+
T Consensus 325 ~~~l---r~~~~gG~~l~~~~~~~~~~~~~~-~~l~-~~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p-~~~~-~v~i~ 397 (570)
T 4gr5_A 325 FEGV---RYAITGGEPASVPHVAKARRDHPA-LRLG-NGYGPAESMGFTTHHAVVAGDLSGTALPIGVP-LAGK-RAYVL 397 (570)
T ss_dssp GTTC---SEEEEESSCCCHHHHHHHHHHCTT-CEEE-EEECCGGGCSCSEEEECCGGGTTSSSCCCBEE-CTTE-EEEEE
T ss_pred CCCc---eEEEEecccCCHHHHHHHHHhCCC-cEEE-EeechhhheeeeeeeeecccccCCCcccccee-eCCC-EEEEE
Confidence 4564 44555652 2455667777766 8888 9999999742 111 1100 000012222 2322 23333
Q ss_pred eCCCCCCccccccccccccCCCCceeeccCcccCCeEEEEeccc---ccee----------------------eeecCCE
Q 044130 331 PLGGENGTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF---AGLN----------------------RYRIGDV 385 (565)
Q Consensus 331 p~~~~~~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~---~GLy----------------------RYriGDv 385 (565)
+.+ .+ ++..|+.+||+|+.. .|.| -|+|||+
T Consensus 398 d~~-------------------~~-----~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDl 453 (570)
T 4gr5_A 398 DDD-------------------LK-----PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDL 453 (570)
T ss_dssp CTT-------------------SC-----BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEE
T ss_pred CCC-------------------CC-----CCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCe
Confidence 311 22 255899999999763 3443 3999999
Q ss_pred EEEeeeeCCCCEEEEEeecCceeeeeecccCHHHHHHHHHHH
Q 044130 386 LQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTIA 427 (565)
Q Consensus 386 V~v~gf~~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~~ 427 (565)
+++.. --.+.|+||.++++.+.|+++...+|++++.+.
T Consensus 454 g~~d~----dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~ 491 (570)
T 4gr5_A 454 ARRRA----DGVLEYVGRADDQVKIRGFRVEPGEVEARLVGH 491 (570)
T ss_dssp EEECT----TSCEEEEEC------------------------
T ss_pred EEECC----CCeEEEEcccCCEEEECcEEeCHHHHHHHHhcC
Confidence 99863 246899999999999999999999999999763
No 35
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=97.87 E-value=3.4e-05 Score=83.34 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=49.8
Q ss_pred cCCeEEEEeccc---cceee------------eecCCEEEEeeeeCCCCEEEEEeecCceeeeeecccCHHHHHHHHHH
Q 044130 363 VGHYYELVVTTF---AGLNR------------YRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 363 ~G~~YelViTt~---~GLyR------------YriGDvV~v~gf~~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~ 426 (565)
.|+.+||+|+.. .|.|. |++||++++.. -..+.|+||.++++.+.|+++...+|+.++.+
T Consensus 345 ~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~~----~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~ 419 (501)
T 3ipl_A 345 KEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEIDH----EGYVMIYDRRKDLIISGGENIYPYQIETVAKQ 419 (501)
T ss_dssp SSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEECT----TSCEEEEEECCCCEECSSCEECHHHHHHHHTT
T ss_pred CCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEcC----CCeEEEEccccceEEECCEEECHHHHHHHHHh
Confidence 577799999764 34443 99999999853 34789999999999999999999999998854
No 36
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=97.70 E-value=4.8e-05 Score=83.23 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=46.9
Q ss_pred CCeEEEEeccc---cceee--------------eecCCEEEEeeeeCCCCEEEEEeecCceeeeeecccCHHHHHHHHHH
Q 044130 364 GHYYELVVTTF---AGLNR--------------YRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 364 G~~YelViTt~---~GLyR--------------YriGDvV~v~gf~~~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~ 426 (565)
|+.+||+|+.. .|.|. |+|||++++.. --.+.|+||.++++.+.|++++..+|++++.+
T Consensus 381 ~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~----dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~ 456 (541)
T 1v25_A 381 KALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDE----EGYVEIKDRLKDLIKSGGEWISSVDLENALMG 456 (541)
T ss_dssp CCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECT----TCCEEEEEESSCEEEETTEEEEHHHHHCC---
T ss_pred CcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcC----CceEEEeecccceeeeCCEEECHHHHHHHHHh
Confidence 36799999864 34442 99999999863 23789999999999999999999999999976
Q ss_pred H
Q 044130 427 A 427 (565)
Q Consensus 427 ~ 427 (565)
.
T Consensus 457 ~ 457 (541)
T 1v25_A 457 H 457 (541)
T ss_dssp -
T ss_pred C
Confidence 3
No 37
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=97.60 E-value=0.00012 Score=88.60 Aligned_cols=129 Identities=16% Similarity=0.203 Sum_probs=82.3
Q ss_pred EEEEEecch---hhhHHHHHHhcCCCCceecccccccceeeeec---CCCC---CCCCCceeeecCCceeEEeeeCCCCC
Q 044130 266 IEAVVTGSM---AQYIPSLEYYSAGKLPLVGTMYASSECYFGVN---LKPL---SNPADVSFTLLPNMCYFEFLPLGGEN 336 (565)
Q Consensus 266 i~~~~~G~~---~~y~~~l~~~~g~~~~~~~~~y~aSEg~~gi~---~~~~---~~~~~~~~~l~p~~~ffEFip~~~~~ 336 (565)
+.++++||- ..-..++.+.+++ +.++ ..||.||+.+... .... ......|.. +++... ..++.+
T Consensus 722 lr~~~~gGe~l~~~~~~~~~~~~~~-~~l~-n~YG~TE~~~~~~~~~~~~~~~~~~~~~iG~p-~~~~~~-~i~d~~--- 794 (1304)
T 2vsq_A 722 LRCILFGGERASVPHVRKALRIMGP-GKLI-NCYGPTEGTVFATAHVVHDLPDSISSLPIGKP-ISNASV-YILNEQ--- 794 (1304)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHHCT-TCEE-EEECCGGGSSCSEEEECCCCCSSCSSCCCBEE-CTTEEE-EEECTT---
T ss_pred ccEEEEecCCCCHHHHHHHHHhCCC-CEEE-EeEChhHHhHHheeeeccCccccCCCCCCcee-eCCCEE-EEECCC---
Confidence 445555662 2445666666776 7888 9999999854211 1110 000011221 233321 222211
Q ss_pred CccccccccccccCCCCceeeccCcccCCeEEEEeccc---cce--------------------eeeecCCEEEEeeeeC
Q 044130 337 GTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTF---AGL--------------------NRYRIGDVLQVTGFYN 393 (565)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~---~GL--------------------yRYriGDvV~v~gf~~ 393 (565)
.++ +..|..+||+|... .|. -.|||||+++...
T Consensus 795 ----------------~~~-----~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~--- 850 (1304)
T 2vsq_A 795 ----------------SQL-----QPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP--- 850 (1304)
T ss_dssp ----------------SCB-----CCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT---
T ss_pred ----------------cCC-----CCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC---
Confidence 223 44899999999753 222 2599999999863
Q ss_pred CCCEEEEEeecCceeeeeecccCHHHHHHHHHH
Q 044130 394 RAPQFRFICRRNVVLSIDNDKTNEEDLHKSVTI 426 (565)
Q Consensus 394 ~~P~i~F~gR~~~~l~i~GEkl~e~~v~~av~~ 426 (565)
--.++|+||.++++.++|+++...+|+.++.+
T Consensus 851 -dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~ 882 (1304)
T 2vsq_A 851 -DGTIEYAGRIDDQVKIRGHRIELEEIEKQLQE 882 (1304)
T ss_dssp -TSCEEEEEEGGGEEEETTEEEEHHHHHHHHHH
T ss_pred -CCeEEEEcCCCCEEEECCEeeCHHHHHHHHHh
Confidence 23799999999999999999999999999976
No 38
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=97.53 E-value=0.00012 Score=75.80 Aligned_cols=98 Identities=12% Similarity=-0.007 Sum_probs=63.1
Q ss_pred EEEEEecc---hhhhHHHHH-HhcCCCCceecccccccceeeeecCCCCCCCCCceeee-----cCCceeEEeeeCCCCC
Q 044130 266 IEAVVTGS---MAQYIPSLE-YYSAGKLPLVGTMYASSECYFGVNLKPLSNPADVSFTL-----LPNMCYFEFLPLGGEN 336 (565)
Q Consensus 266 i~~~~~G~---~~~y~~~l~-~~~g~~~~~~~~~y~aSEg~~gi~~~~~~~~~~~~~~l-----~p~~~ffEFip~~~~~ 336 (565)
+..+++|| ....+++++ +.+|+ ++++ ..||.||+.... . .|+....+.++ .|+ ...+.+++++
T Consensus 233 lr~i~~gGe~l~~~~~~~~~~~~~p~-~~v~-~~YG~TE~~~~~-~--~~~~~~~G~~~~~~~~~~~-~~v~ivD~~~-- 304 (369)
T 3hgu_A 233 LAQITLGGTELNLDEIKFIASEILPD-CEFS-ASYGSTSALGVS-R--SLLITSESQQVIYDSFSPF-ITYDVVDSIT-- 304 (369)
T ss_dssp CSEEEEESSCCCHHHHHHHHHHTCTT-SEEE-EEEEEGGGTEEE-E--ECCBCTTCSSCEEECCTTT-EEEEEECTTT--
T ss_pred eeEEEECCccCCHHHHHHHHHHhCCC-cEEE-cccCchhhhcce-e--ccccccCCCcccccCCCCC-eEEEEECCCC--
Confidence 44555565 346678888 88866 8988 899999974321 1 22221134432 233 4566665432
Q ss_pred CccccccccccccCCCCceeeccCcccCCeEEEEecccc---ceeeeecCCEEEEeeee
Q 044130 337 GTLLSMEFNEEEEVPNDKLVDLGHVRVGHYYELVVTTFA---GLNRYRIGDVLQVTGFY 392 (565)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~v~l~eve~G~~YelViTt~~---GLyRYriGDvV~v~gf~ 392 (565)
.++ |..|+.+||+||+.. -|.||++||+.+.....
T Consensus 305 ----------------g~~-----vp~G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~ 342 (369)
T 3hgu_A 305 ----------------AQT-----VEYGERGNVIVTHLSPWAFYPRVAERDTAIRLPGV 342 (369)
T ss_dssp ----------------CSB-----CCTTCEEEEEEEEEETTEEEEEEEEEEEEEEECCS
T ss_pred ----------------CcC-----CCCCCceEEEEEEcCcccccccccCCceEEEecCC
Confidence 223 448999999999863 39999999999877643
No 39
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=96.37 E-value=0.0074 Score=51.47 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=58.8
Q ss_pred ecCceeeeeecccCHHHHHHHHHHHHhhcccCCCeEEeEEEeecCCCCCceeEEEEEEEecCCCCCCCChHHHHHHHHHH
Q 044130 403 RRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCIA 482 (565)
Q Consensus 403 R~~~~l~i~GEkl~e~~v~~av~~~~~~l~~~g~~l~~f~~~~d~~~~p~~Y~l~~e~e~~~~~~~~~~~~~~l~~~~~~ 482 (565)
|.|||+.+.|.++++.+|+++|.+. .++. ..+.+..+.........+++++.. +. ..+ ...++.+++.
T Consensus 2 rADDmIiv~G~nv~P~eIE~vl~~~------p~v~-~~~vv~v~~~~~~~~~~~~V~~~~-~~---~~~-~~~~~~l~~~ 69 (109)
T 3lax_A 2 NADDMIILKGVNIFPIQIETILLQF------KELG-SDYLITLETAESNDEMTVEVELSQ-LF---TDD-YGRLQALTRE 69 (109)
T ss_dssp GGGSCEEETTEEECHHHHHHHHHTC------TTEE-EEEEEEEEEETTEEEEEEEEEECT-TC---CCC-HHHHHHHHHH
T ss_pred CcCEEEEECCEEECHHHHHHHHHhC------CCcc-cceEEEEeccccceeEEEEEEEee-cc---ccc-cchhhhhHHH
Confidence 8999999999999999999998653 2221 123333332222223446666642 11 122 4556677777
Q ss_pred HHHHhChHHHHhhccCCccCCeEEEEeCCCcHHH
Q 044130 483 VEEQLDYVYRRCRSHDKSVGPLEIRVVEPGTFET 516 (565)
Q Consensus 483 ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtf~~ 516 (565)
+-+++ +... .+. +.|.+|++|++.+
T Consensus 70 i~~~l-------~~~~-gv~-~~v~~v~~~~lPr 94 (109)
T 3lax_A 70 ITRQL-------KDEI-LVT-PRVKLVPKGALPK 94 (109)
T ss_dssp HHHHH-------HHHH-SSC-CEEEEECTTCSCC
T ss_pred HHHHH-------HHHh-CCc-cceEEEcCCeecC
Confidence 77776 3333 365 5799999999875
No 40
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=96.24 E-value=0.011 Score=50.71 Aligned_cols=94 Identities=12% Similarity=0.114 Sum_probs=58.7
Q ss_pred eecCceeeeeecccCHHHHHHHHHHHHhhcccCCCeEEeEEEeecCCCCCceeEEEEEEEecCCCCCCCChHHHHHHHHH
Q 044130 402 CRRNVVLSIDNDKTNEEDLHKSVTIAKNLLEPYSALLVEYTSYADTSTVPGHYVLYWEIQIVDSPALPLDHQKVLEECCI 481 (565)
Q Consensus 402 gR~~~~l~i~GEkl~e~~v~~av~~~~~~l~~~g~~l~~f~~~~d~~~~p~~Y~l~~e~e~~~~~~~~~~~~~~l~~~~~ 481 (565)
||.++|+.+.|.++++.+|++++.+. + ++. ..|.+..+.....-.-++++|+ . +. ..++....+++..
T Consensus 1 GR~~D~Iiv~G~nv~P~eIE~~l~~~-p-----~v~-~~~~v~v~~~~~~e~l~~~ve~-~-~~---~~~~~~~~~~l~~ 68 (109)
T 3gxs_A 1 SNADDMIILKGVNIFPIQIETILLQF-K-----ELG-SDYLITLETAESNDEMTVEVEL-S-QL---FTDDYGRLQALTR 68 (109)
T ss_dssp CGGGSCEEETTEEECHHHHHHHHHTC-T-----TEE-EEEEEEEEEETTEEEEEEEEEE-C-TT---CCCCHHHHHHHHH
T ss_pred CCccCEEEECCEEECHHHHHHHHHhC-C-----CcC-CcEEEEEEcCCCceEEEEEEEE-c-Cc---cccchhHHHHHHH
Confidence 79999999999999999999999762 2 221 1444433322122244577777 3 21 1110224555666
Q ss_pred HHHHHhChHHHHhhccCCccCCeEEEEeCCCcHHH
Q 044130 482 AVEEQLDYVYRRCRSHDKSVGPLEIRVVEPGTFET 516 (565)
Q Consensus 482 ~ld~~Ln~~Y~~~R~~~g~l~p~~v~~v~~gtf~~ 516 (565)
.+.+.+ +... .+.| .|.+|++|++.+
T Consensus 69 ~i~~~l-------~~~~-~~~~-~v~~v~~~~lPr 94 (109)
T 3gxs_A 69 EITRQL-------KDEI-LVTP-RVKLVPKGALPK 94 (109)
T ss_dssp HHHHHH-------HHHH-SSCC-EEEEECTTCSCC
T ss_pred HHHHHH-------HHhh-CCce-EEEEECCCCccC
Confidence 666666 3334 3654 999999999876
No 41
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=91.60 E-value=0.29 Score=51.61 Aligned_cols=38 Identities=29% Similarity=0.189 Sum_probs=28.2
Q ss_pred cccCCeEEEEeccc---ccee-------------------------eeecCCEEEEeeeeCCCCEEEEEee
Q 044130 361 VRVGHYYELVVTTF---AGLN-------------------------RYRIGDVLQVTGFYNRAPQFRFICR 403 (565)
Q Consensus 361 ve~G~~YelViTt~---~GLy-------------------------RYriGDvV~v~gf~~~~P~i~F~gR 403 (565)
+..|+.+||+|... .|.| -|||||++++. + -.+.|+||
T Consensus 415 ~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d---d--G~l~~~GR 480 (480)
T 3t5a_A 415 CPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT---D--GKMFIIGR 480 (480)
T ss_dssp CCTTBCEEEEEESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE---T--TEEEECC-
T ss_pred CCCCCEEEEEEeCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE---C--CEEEEeCC
Confidence 56899999999764 4543 49999999873 2 37888887
No 42
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=53.26 E-value=48 Score=26.13 Aligned_cols=49 Identities=16% Similarity=0.180 Sum_probs=37.6
Q ss_pred cccCHHHHHHHHHHHHhhcccC-CCeEEeEEEeecCCCCCceeEEEEEEEe
Q 044130 413 DKTNEEDLHKSVTIAKNLLEPY-SALLVEYTSYADTSTVPGHYVLYWEIQI 462 (565)
Q Consensus 413 Ekl~e~~v~~av~~~~~~l~~~-g~~l~~f~~~~d~~~~p~~Y~l~~e~e~ 462 (565)
.+-.|+.+++||.+|.+.|+.- ++++.+..+..+. +.-.||.+-+.+.|
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lKV~F 64 (72)
T 3onr_A 15 PTSWEQAAAEAVQRARDSVDDIRVARVIEQDMAVDS-AGKITYRIKLEVSF 64 (72)
T ss_dssp SSCHHHHHHHHHHHHHHHCSCCCEEEEEEEEEEECT-TCCEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEEE
Confidence 4667999999999999987532 4678888887664 35579998777776
No 43
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=51.07 E-value=55 Score=25.50 Aligned_cols=49 Identities=10% Similarity=0.083 Sum_probs=36.4
Q ss_pred cccCHHHHHHHHHHHHhhcccC-CCeEEeEEEeecCCCCCceeEEEEEEEe
Q 044130 413 DKTNEEDLHKSVTIAKNLLEPY-SALLVEYTSYADTSTVPGHYVLYWEIQI 462 (565)
Q Consensus 413 Ekl~e~~v~~av~~~~~~l~~~-g~~l~~f~~~~d~~~~p~~Y~l~~e~e~ 462 (565)
.+-.|+.+++||.+|++.|+.. ++++.+..+..+. +.-.||.+-+.+.|
T Consensus 13 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lKV~F 62 (68)
T 2cc6_A 13 EESFTAAADDAIDRAEDTLDNVVWAEVVDQGVEIGA-VEERTYQTEVQVAF 62 (68)
T ss_dssp SSCHHHHHHHHHHHHHHHCSCEEEEEEEEEEEECTT-SSSCEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEEE
Confidence 4667999999999999887422 4677777777654 34569998777766
No 44
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=41.14 E-value=9.3 Score=39.61 Aligned_cols=49 Identities=16% Similarity=0.208 Sum_probs=37.9
Q ss_pred hcHHHHHHHHHHHHHHHc-CCChHHHhhh-------CCCCChhhhhhcCCCccCCcch
Q 044130 23 AKADEVQNNLLREILIRN-GETEYLRKYL-------RGSKDVSDFKRCVPVSTYKNIY 72 (565)
Q Consensus 23 ~~~~~~Q~~~L~~iL~~n-~~T~ygk~~f-------~~i~~~e~Fr~~VPl~~Yed~~ 72 (565)
+..++.|.+-|+.+|+.. +++.|.+++| ..+.+.+||+ ++|+.+++++.
T Consensus 21 ~~~~~~~~~~l~~~l~~a~~~~~~y~~~~~~~~~~~~~i~~~~dl~-~lP~~~~~~l~ 77 (437)
T 2y27_A 21 DELTALQLERLKWSLRHAYDHSPVYRRKFDEAGVHPDDLKTLADLS-RFPFTTKGDLR 77 (437)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTCCGGGCSSGGGGG-GSCCBCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCCChhhCCCHHHHH-HCCCCCHHHHH
Confidence 345678899999999865 6788888763 2367889998 69999998874
No 45
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=39.94 E-value=57 Score=25.50 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=35.6
Q ss_pred cccCHHHHHHHHHHHHhhcccC-CCeEEeEEEeecCCCCCceeEEEEEEEe
Q 044130 413 DKTNEEDLHKSVTIAKNLLEPY-SALLVEYTSYADTSTVPGHYVLYWEIQI 462 (565)
Q Consensus 413 Ekl~e~~v~~av~~~~~~l~~~-g~~l~~f~~~~d~~~~p~~Y~l~~e~e~ 462 (565)
.+-.|+.+++||.+|.+.|+.. ++++.+..+..+. +.-.||.+-+.+.|
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lkV~F 64 (69)
T 2ux9_A 15 EEGLEAAIQAALARARKTLRHLDWFEVKEIRGTIGE-AGVKEYQVVLEVGF 64 (69)
T ss_dssp SSCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEET-TEEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEEE
Confidence 4567999999999999887422 4677777776653 34468987777765
No 46
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=39.35 E-value=58 Score=25.68 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=35.8
Q ss_pred cccCHHHHHHHHHHHHhhcccC-CCeEEeEEEeecCCCCCceeEEEEEEEe
Q 044130 413 DKTNEEDLHKSVTIAKNLLEPY-SALLVEYTSYADTSTVPGHYVLYWEIQI 462 (565)
Q Consensus 413 Ekl~e~~v~~av~~~~~~l~~~-g~~l~~f~~~~d~~~~p~~Y~l~~e~e~ 462 (565)
.+-.|+.+++||.+|.+.|+.. ++++.+.++..+. +.-.||.+-+.+.|
T Consensus 16 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~r~~v~d-gki~~yqV~lKV~F 65 (72)
T 2vxa_A 16 PNGIEEAVNNAIARAGETLRHLRWFEVVDTRGHIEG-GRVNHWQVTVKVGF 65 (72)
T ss_dssp SSCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEET-TEEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhhccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEEE
Confidence 4567999999999999887422 4677777776653 34469987777765
No 47
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=39.10 E-value=60 Score=25.38 Aligned_cols=49 Identities=4% Similarity=0.022 Sum_probs=35.6
Q ss_pred cccCHHHHHHHHHHHHhhcccC-CCeEEeEEEeecCCCCCceeEEEEEEEe
Q 044130 413 DKTNEEDLHKSVTIAKNLLEPY-SALLVEYTSYADTSTVPGHYVLYWEIQI 462 (565)
Q Consensus 413 Ekl~e~~v~~av~~~~~~l~~~-g~~l~~f~~~~d~~~~p~~Y~l~~e~e~ 462 (565)
.+-.|+.+++||.+|.+.|+.. ++++.+..+..+. +.-.||.+-+.+.|
T Consensus 15 ~~S~edAi~nAi~~AskTl~ni~~~eV~e~~~~v~d-gkv~~yqv~lkv~F 64 (69)
T 2yiz_A 15 PDGVDAAIQGGLARAAQTMRALDWFEVQSIRGHLVD-GAVAHFQVTMKVGF 64 (69)
T ss_dssp TTCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEET-TEEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcccCCeEEEEEEEEEEEeC-CcEEEEEEEEEEEE
Confidence 4567999999999999887422 4677777776653 24468987777765
No 48
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=25.90 E-value=45 Score=26.79 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=24.8
Q ss_pred eeecCCEEEEeeeeCCCCEEEEEeecCceeeeeeccc
Q 044130 379 RYRIGDVLQVTGFYNRAPQFRFICRRNVVLSIDNDKT 415 (565)
Q Consensus 379 RYriGDvV~v~gf~~~~P~i~F~gR~~~~l~i~GEkl 415 (565)
|+..||.|++.+ -+.+.+.|. ...|.|..|+.+
T Consensus 29 ~f~~GD~iEi~~--P~g~~~~~~--v~~m~d~~G~~i 61 (89)
T 4he6_A 29 HFRPGDEVEFFG--PEIENFTQV--IEKIWDEDGNEL 61 (89)
T ss_dssp CBCTTCEEEEES--TTSCCEEEE--CCCEEETTSCEE
T ss_pred CcCCCCEEEEEc--CCCCcEEEE--eHHeEcCCCCEe
Confidence 788999999987 455555554 567888888766
No 49
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=24.13 E-value=48 Score=28.72 Aligned_cols=25 Identities=28% Similarity=0.360 Sum_probs=22.1
Q ss_pred cccCCeEEEEeccccc--eeeeecCCE
Q 044130 361 VRVGHYYELVVTTFAG--LNRYRIGDV 385 (565)
Q Consensus 361 ve~G~~YelViTt~~G--LyRYriGDv 385 (565)
.-.|+.|+++|...+| +|||.-|+.
T Consensus 38 f~Sgq~~Df~v~d~~G~~VwrwS~~~~ 64 (120)
T 3isy_A 38 FSTGQKFELVVYDSEHKERYRYSKEKM 64 (120)
T ss_dssp ESSSCCEEEEEECTTCCEEEETTTTCC
T ss_pred eCCCCEEEEEEECCCCCEEEEccccch
Confidence 5689999999999888 999998875
Done!