Query 044131
Match_columns 784
No_of_seqs 926 out of 5087
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 11:45:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044131.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044131hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 1E-161 2E-166 1434.7 88.1 775 3-782 80-857 (857)
2 PLN03081 pentatricopeptide (PP 100.0 2E-136 4E-141 1189.8 72.1 614 171-784 84-697 (697)
3 PLN03077 Protein ECB2; Provisi 100.0 4E-84 8.6E-89 769.4 68.6 575 67-648 46-623 (857)
4 PLN03081 pentatricopeptide (PP 100.0 9.5E-72 2.1E-76 647.9 54.0 474 69-547 84-561 (697)
5 PLN03218 maturation of RBCL 1; 100.0 6.2E-70 1.3E-74 634.2 55.5 525 37-582 366-916 (1060)
6 PLN03218 maturation of RBCL 1; 100.0 6.5E-66 1.4E-70 600.5 59.1 550 140-703 367-964 (1060)
7 PF14432 DYW_deaminase: DYW fa 100.0 2.9E-41 6.2E-46 289.3 7.5 106 651-774 2-116 (116)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 5.5E-32 1.2E-36 328.5 65.0 579 50-642 304-898 (899)
9 TIGR02917 PEP_TPR_lipo putativ 100.0 2.8E-31 6.1E-36 322.4 67.6 588 41-645 227-867 (899)
10 PRK11447 cellulose synthase su 100.0 7.4E-23 1.6E-27 250.1 63.8 603 22-646 44-743 (1157)
11 PRK11447 cellulose synthase su 99.9 1E-22 2.2E-27 248.9 58.0 585 46-645 33-701 (1157)
12 PRK09782 bacteriophage N4 rece 99.9 1.6E-19 3.5E-24 210.8 56.1 557 52-641 55-737 (987)
13 PRK09782 bacteriophage N4 rece 99.9 1.2E-18 2.5E-23 203.6 57.5 546 75-643 45-705 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 5.2E-19 1.1E-23 182.8 36.1 449 177-640 51-515 (966)
15 PRK11788 tetratricopeptide rep 99.8 4.4E-18 9.5E-23 185.5 28.6 306 184-531 45-365 (389)
16 KOG4626 O-linked N-acetylgluco 99.8 9.9E-18 2.1E-22 173.5 28.1 413 218-643 56-484 (966)
17 TIGR00990 3a0801s09 mitochondr 99.8 1.4E-16 3E-21 183.2 40.6 248 390-643 307-570 (615)
18 PRK11788 tetratricopeptide rep 99.8 1.4E-17 3.1E-22 181.5 30.0 292 355-651 44-354 (389)
19 PRK15174 Vi polysaccharide exp 99.8 4.7E-15 1E-19 170.0 40.8 351 256-615 16-386 (656)
20 PRK10049 pgaA outer membrane p 99.8 7.1E-15 1.5E-19 172.2 42.5 357 279-643 52-455 (765)
21 KOG2002 TPR-containing nuclear 99.8 1.2E-13 2.6E-18 151.5 47.6 575 57-646 146-800 (1018)
22 PRK10049 pgaA outer membrane p 99.8 2E-14 4.2E-19 168.5 45.1 394 181-618 22-464 (765)
23 TIGR00990 3a0801s09 mitochondr 99.7 2.7E-14 5.9E-19 164.3 43.5 270 359-643 307-596 (615)
24 PRK15174 Vi polysaccharide exp 99.7 1.4E-14 3E-19 166.1 37.2 325 311-644 42-381 (656)
25 PRK14574 hmsH outer membrane p 99.7 1.9E-13 4.2E-18 157.0 45.3 437 119-618 45-521 (822)
26 KOG2002 TPR-containing nuclear 99.7 3.8E-13 8.3E-18 147.5 44.5 542 88-643 146-744 (1018)
27 PRK14574 hmsH outer membrane p 99.7 1.9E-13 4.2E-18 157.0 43.8 431 184-643 44-512 (822)
28 KOG4422 Uncharacterized conser 99.7 1E-12 2.2E-17 131.3 37.3 326 72-443 116-464 (625)
29 KOG2076 RNA polymerase III tra 99.6 6.3E-11 1.4E-15 129.7 47.7 583 50-640 149-891 (895)
30 KOG4422 Uncharacterized conser 99.6 1.6E-12 3.5E-17 129.9 31.3 254 71-357 206-479 (625)
31 KOG2076 RNA polymerase III tra 99.6 2.2E-10 4.7E-15 125.6 47.7 341 122-467 153-546 (895)
32 KOG0495 HAT repeat protein [RN 99.6 2.5E-10 5.4E-15 120.2 45.3 458 186-657 418-891 (913)
33 KOG4318 Bicoid mRNA stability 99.6 2.4E-11 5.2E-16 131.9 37.3 587 27-646 11-810 (1088)
34 KOG4318 Bicoid mRNA stability 99.5 9.4E-11 2E-15 127.5 37.0 529 95-654 12-603 (1088)
35 KOG2003 TPR repeat-containing 99.5 1.6E-11 3.4E-16 123.4 26.8 472 118-631 211-710 (840)
36 PF13429 TPR_15: Tetratricopep 99.5 4.1E-14 8.8E-19 146.2 9.0 253 384-641 15-274 (280)
37 KOG2003 TPR repeat-containing 99.4 1.3E-10 2.8E-15 116.9 27.6 435 180-643 207-688 (840)
38 KOG1915 Cell cycle control pro 99.4 6.9E-09 1.5E-13 105.7 39.5 482 155-643 85-624 (677)
39 KOG0547 Translocase of outer m 99.4 1.6E-09 3.6E-14 110.7 32.6 400 179-641 120-563 (606)
40 KOG0495 HAT repeat protein [RN 99.4 2.9E-08 6.4E-13 105.0 42.7 491 114-622 382-892 (913)
41 KOG1126 DNA-binding cell divis 99.4 3.9E-11 8.4E-16 127.5 21.8 242 393-643 335-585 (638)
42 KOG1155 Anaphase-promoting com 99.4 1.3E-09 2.8E-14 110.9 31.3 245 389-641 274-533 (559)
43 PRK10747 putative protoheme IX 99.4 3.5E-10 7.6E-15 122.5 28.6 224 353-611 160-391 (398)
44 PRK10747 putative protoheme IX 99.4 4.4E-10 9.5E-15 121.7 28.7 273 359-641 97-387 (398)
45 TIGR00540 hemY_coli hemY prote 99.3 4.1E-09 8.8E-14 114.8 33.1 221 384-607 160-396 (409)
46 KOG1126 DNA-binding cell divis 99.3 1.8E-10 3.9E-15 122.6 21.3 275 361-645 334-621 (638)
47 KOG1915 Cell cycle control pro 99.3 2.4E-08 5.3E-13 101.8 34.8 347 324-683 154-535 (677)
48 TIGR00540 hemY_coli hemY prote 99.3 2.6E-09 5.7E-14 116.3 29.7 278 357-641 95-396 (409)
49 TIGR02521 type_IV_pilW type IV 99.3 7.3E-10 1.6E-14 110.9 23.2 197 446-643 30-231 (234)
50 PF13429 TPR_15: Tetratricopep 99.3 2.1E-11 4.6E-16 125.9 12.0 189 348-539 80-274 (280)
51 KOG1155 Anaphase-promoting com 99.3 5.2E-08 1.1E-12 99.4 35.5 190 379-572 332-530 (559)
52 KOG1173 Anaphase-promoting com 99.2 2.7E-08 5.8E-13 104.1 30.8 253 384-642 251-516 (611)
53 PF13041 PPR_2: PPR repeat fam 99.2 4.1E-11 8.8E-16 87.1 6.8 50 476-525 1-50 (50)
54 PF13041 PPR_2: PPR repeat fam 99.2 6E-11 1.3E-15 86.2 6.6 50 375-424 1-50 (50)
55 COG3071 HemY Uncharacterized e 99.2 7.2E-08 1.6E-12 97.1 29.9 288 282-608 88-388 (400)
56 COG2956 Predicted N-acetylgluc 99.2 4.8E-08 1E-12 95.3 27.4 312 288-665 47-368 (389)
57 KOG2047 mRNA splicing factor [ 99.2 2E-05 4.3E-10 84.1 50.0 439 47-540 108-613 (835)
58 KOG1840 Kinesin light chain [C 99.1 1.7E-08 3.7E-13 108.9 26.0 231 412-642 199-477 (508)
59 KOG1174 Anaphase-promoting com 99.1 3.3E-07 7.1E-12 92.2 32.8 274 338-617 224-507 (564)
60 KOG3616 Selective LIM binding 99.1 2.2E-07 4.9E-12 99.2 32.2 165 118-302 500-674 (1636)
61 KOG0985 Vesicle coat protein c 99.1 1.6E-05 3.4E-10 88.5 47.1 154 477-651 1103-1256(1666)
62 PRK12370 invasion protein regu 99.1 1.9E-08 4.1E-13 113.9 26.4 243 392-644 276-535 (553)
63 KOG2047 mRNA splicing factor [ 99.1 8.7E-06 1.9E-10 86.7 43.4 522 57-644 91-687 (835)
64 KOG3785 Uncharacterized conser 99.1 8.8E-07 1.9E-11 87.4 32.2 446 119-613 33-493 (557)
65 COG3071 HemY Uncharacterized e 99.1 2.1E-07 4.5E-12 93.9 27.8 290 187-511 97-394 (400)
66 COG2956 Predicted N-acetylgluc 99.1 1.3E-07 2.8E-12 92.3 25.4 286 187-508 48-348 (389)
67 KOG1173 Anaphase-promoting com 99.0 3.5E-07 7.6E-12 95.9 29.7 268 242-551 241-524 (611)
68 KOG1127 TPR repeat-containing 99.0 3.8E-07 8.3E-12 101.2 31.2 552 22-616 472-1073(1238)
69 KOG1840 Kinesin light chain [C 99.0 1.6E-07 3.5E-12 101.4 27.6 237 345-609 198-478 (508)
70 KOG1129 TPR repeat-containing 99.0 1.5E-08 3.3E-13 98.5 17.1 227 381-644 227-458 (478)
71 KOG4162 Predicted calmodulin-b 99.0 1.5E-06 3.2E-11 94.6 33.8 446 137-643 317-782 (799)
72 PRK12370 invasion protein regu 99.0 4.2E-08 9.1E-13 111.1 23.6 210 426-643 275-501 (553)
73 KOG2376 Signal recognition par 99.0 5.1E-06 1.1E-10 87.8 35.9 363 256-637 90-513 (652)
74 KOG0547 Translocase of outer m 99.0 1.9E-06 4.1E-11 88.8 31.6 400 79-505 122-564 (606)
75 TIGR02521 type_IV_pilW type IV 99.0 1.4E-07 3.1E-12 94.2 23.8 198 377-610 31-232 (234)
76 PRK11189 lipoprotein NlpI; Pro 99.0 7.8E-08 1.7E-12 99.7 22.2 210 427-645 41-266 (296)
77 KOG4162 Predicted calmodulin-b 99.0 1.9E-06 4.2E-11 93.7 32.6 397 239-645 317-750 (799)
78 COG3063 PilF Tfp pilus assembl 98.9 1E-07 2.2E-12 89.1 17.9 162 480-646 37-204 (250)
79 PRK11189 lipoprotein NlpI; Pro 98.9 5.1E-07 1.1E-11 93.6 25.0 229 391-627 40-283 (296)
80 KOG2376 Signal recognition par 98.8 4.4E-05 9.5E-10 81.0 35.0 417 82-525 22-504 (652)
81 PF12569 NARP1: NMDA receptor- 98.8 6E-05 1.3E-09 82.9 36.2 255 380-639 197-515 (517)
82 KOG1156 N-terminal acetyltrans 98.8 0.00012 2.6E-09 78.5 36.5 217 120-375 19-248 (700)
83 KOG0985 Vesicle coat protein c 98.8 0.00052 1.1E-08 77.0 42.2 128 361-501 1090-1217(1666)
84 PF04733 Coatomer_E: Coatomer 98.7 1.2E-06 2.7E-11 89.4 18.9 81 563-643 181-264 (290)
85 KOG3785 Uncharacterized conser 98.7 3.3E-05 7.1E-10 76.6 26.5 191 452-647 290-493 (557)
86 KOG1156 N-terminal acetyltrans 98.6 0.00022 4.7E-09 76.7 33.7 350 255-645 51-469 (700)
87 KOG1174 Anaphase-promoting com 98.6 0.00023 4.9E-09 72.3 31.9 360 143-506 97-499 (564)
88 KOG1129 TPR repeat-containing 98.6 2.2E-06 4.8E-11 83.8 17.0 228 348-580 225-461 (478)
89 COG3063 PilF Tfp pilus assembl 98.6 9.8E-06 2.1E-10 76.1 20.2 193 421-617 44-243 (250)
90 PF12569 NARP1: NMDA receptor- 98.6 1.8E-05 4E-10 86.8 25.2 255 354-646 12-293 (517)
91 cd05804 StaR_like StaR_like; a 98.6 6.7E-05 1.4E-09 80.6 29.6 292 348-643 8-335 (355)
92 KOG3616 Selective LIM binding 98.5 0.0028 6.1E-08 68.8 43.6 75 554-628 1297-1374(1636)
93 KOG1127 TPR repeat-containing 98.5 0.00017 3.6E-09 81.0 30.6 466 126-640 474-992 (1238)
94 KOG3617 WD40 and TPR repeat-co 98.5 0.00034 7.4E-09 76.7 32.1 389 141-576 724-1172(1416)
95 PRK04841 transcriptional regul 98.5 0.0016 3.5E-08 79.4 42.8 361 151-542 349-760 (903)
96 KOG3617 WD40 and TPR repeat-co 98.5 0.0049 1.1E-07 68.1 38.7 267 63-373 717-994 (1416)
97 PRK15359 type III secretion sy 98.4 3.8E-06 8.3E-11 76.6 13.5 121 499-626 14-137 (144)
98 KOG1125 TPR repeat-containing 98.4 4.4E-06 9.5E-11 88.3 15.4 215 424-641 297-524 (579)
99 TIGR03302 OM_YfiO outer membra 98.4 1.9E-05 4.1E-10 79.2 19.3 179 446-644 32-232 (235)
100 PF04733 Coatomer_E: Coatomer 98.4 1.3E-05 2.7E-10 82.0 18.0 162 447-615 102-270 (290)
101 KOG1070 rRNA processing protei 98.4 4.9E-05 1.1E-09 87.8 23.9 200 444-647 1455-1666(1710)
102 PF12854 PPR_1: PPR repeat 98.4 2.7E-07 5.8E-12 60.1 3.5 33 138-170 2-34 (34)
103 PF12854 PPR_1: PPR repeat 98.4 3.7E-07 8E-12 59.5 4.0 33 240-272 2-34 (34)
104 KOG0548 Molecular co-chaperone 98.4 0.00025 5.3E-09 74.8 26.6 212 417-643 229-454 (539)
105 PRK04841 transcriptional regul 98.4 0.00031 6.6E-09 85.7 31.8 294 350-643 413-759 (903)
106 cd05804 StaR_like StaR_like; a 98.4 0.00063 1.4E-08 73.0 30.7 265 377-643 6-292 (355)
107 KOG0624 dsRNA-activated protei 98.4 0.00072 1.6E-08 67.1 27.2 307 282-617 44-377 (504)
108 PLN02789 farnesyltranstransfer 98.3 0.00013 2.8E-09 75.7 22.7 212 379-628 39-268 (320)
109 KOG1128 Uncharacterized conser 98.3 2.2E-05 4.8E-10 85.2 17.3 221 342-611 394-617 (777)
110 PRK10370 formate-dependent nit 98.3 2.7E-05 5.8E-10 75.2 16.2 117 526-644 52-173 (198)
111 PRK15363 pathogenicity island 98.3 1.1E-05 2.5E-10 72.2 12.2 118 549-689 35-154 (157)
112 PRK15359 type III secretion sy 98.3 2.6E-05 5.6E-10 71.1 14.1 105 534-643 14-120 (144)
113 KOG1914 mRNA cleavage and poly 98.2 0.012 2.6E-07 62.4 38.3 170 394-565 348-526 (656)
114 PRK10370 formate-dependent nit 98.2 9.2E-05 2E-09 71.4 18.0 156 454-621 23-184 (198)
115 COG5010 TadD Flp pilus assembl 98.2 3.5E-05 7.6E-10 74.1 14.5 134 509-644 62-197 (257)
116 KOG0624 dsRNA-activated protei 98.2 0.0022 4.7E-08 63.9 26.2 302 251-576 44-368 (504)
117 PRK15179 Vi polysaccharide bio 98.2 8.5E-05 1.8E-09 84.9 19.0 138 476-618 84-225 (694)
118 KOG0548 Molecular co-chaperone 98.2 0.00058 1.3E-08 72.1 23.0 164 453-628 304-473 (539)
119 KOG4340 Uncharacterized conser 98.1 0.0018 3.9E-08 63.1 23.8 373 247-642 46-441 (459)
120 TIGR03302 OM_YfiO outer membra 98.1 0.00017 3.7E-09 72.3 17.4 181 410-612 31-234 (235)
121 COG4783 Putative Zn-dependent 98.1 0.0011 2.4E-08 69.4 23.1 117 522-641 315-434 (484)
122 KOG1128 Uncharacterized conser 98.1 0.0001 2.3E-09 80.2 16.2 187 442-643 393-581 (777)
123 KOG2053 Mitochondrial inherita 98.1 0.036 7.8E-07 62.5 35.8 169 415-587 439-619 (932)
124 TIGR02552 LcrH_SycD type III s 98.1 8.3E-05 1.8E-09 67.2 13.2 99 545-643 12-113 (135)
125 KOG4340 Uncharacterized conser 98.1 0.00054 1.2E-08 66.7 18.9 302 314-639 13-334 (459)
126 TIGR00756 PPR pentatricopeptid 98.0 6.3E-06 1.4E-10 54.4 4.1 35 479-513 1-35 (35)
127 TIGR00756 PPR pentatricopeptid 98.0 7.4E-06 1.6E-10 54.1 4.3 34 378-411 1-34 (35)
128 KOG1070 rRNA processing protei 98.0 0.001 2.2E-08 77.5 23.6 196 412-611 1458-1664(1710)
129 KOG1125 TPR repeat-containing 98.0 0.00024 5.1E-09 75.6 16.9 228 356-613 295-530 (579)
130 PRK15179 Vi polysaccharide bio 98.0 0.00048 1E-08 78.8 20.9 142 443-589 82-230 (694)
131 COG4783 Putative Zn-dependent 98.0 0.0016 3.5E-08 68.3 21.6 145 479-645 307-455 (484)
132 PLN02789 farnesyltranstransfer 97.9 0.0054 1.2E-07 63.7 25.2 209 347-593 38-267 (320)
133 COG5010 TadD Flp pilus assembl 97.9 0.001 2.2E-08 64.2 17.7 153 451-607 70-228 (257)
134 PF09295 ChAPs: ChAPs (Chs5p-A 97.9 0.00044 9.6E-09 73.2 16.7 122 516-642 172-295 (395)
135 PRK14720 transcript cleavage f 97.9 0.0015 3.2E-08 75.6 21.6 234 374-646 28-286 (906)
136 PF13812 PPR_3: Pentatricopept 97.8 2.7E-05 5.9E-10 51.0 4.3 33 479-511 2-34 (34)
137 PF09295 ChAPs: ChAPs (Chs5p-A 97.8 0.00037 8.1E-09 73.7 15.0 127 449-579 171-298 (395)
138 PF13812 PPR_3: Pentatricopept 97.8 2.6E-05 5.7E-10 51.0 3.8 34 276-309 1-34 (34)
139 KOG3060 Uncharacterized conser 97.8 0.0032 7E-08 60.3 18.5 155 456-615 61-225 (289)
140 TIGR02552 LcrH_SycD type III s 97.7 0.00076 1.7E-08 60.8 13.3 114 500-618 5-122 (135)
141 KOG3081 Vesicle coat complex C 97.7 0.019 4.1E-07 55.7 22.4 165 435-636 96-262 (299)
142 KOG0553 TPR repeat-containing 97.7 0.00065 1.4E-08 66.8 12.3 99 523-624 91-192 (304)
143 PF01535 PPR: PPR repeat; Int 97.6 7.1E-05 1.5E-09 47.7 3.3 31 378-408 1-31 (31)
144 PF09976 TPR_21: Tetratricopep 97.6 0.0018 3.9E-08 59.2 13.8 82 557-639 56-142 (145)
145 PRK14720 transcript cleavage f 97.6 0.01 2.3E-07 68.9 22.7 167 312-507 32-198 (906)
146 PF01535 PPR: PPR repeat; Int 97.6 7.9E-05 1.7E-09 47.5 3.4 31 277-307 1-31 (31)
147 cd00189 TPR Tetratricopeptide 97.6 0.00062 1.4E-08 56.3 9.8 92 552-643 3-96 (100)
148 PLN03088 SGT1, suppressor of 97.6 0.00098 2.1E-08 70.9 13.2 98 521-621 10-110 (356)
149 PF13414 TPR_11: TPR repeat; P 97.5 0.00023 4.9E-09 55.6 6.0 64 580-643 2-66 (69)
150 KOG1914 mRNA cleavage and poly 97.5 0.2 4.3E-06 53.6 36.2 210 429-641 310-536 (656)
151 KOG3081 Vesicle coat complex C 97.5 0.021 4.5E-07 55.4 19.8 137 399-542 95-236 (299)
152 PF12895 Apc3: Anaphase-promot 97.5 0.00012 2.6E-09 59.8 4.3 78 562-640 2-83 (84)
153 KOG0550 Molecular chaperone (D 97.5 0.0024 5.3E-08 65.3 13.9 265 354-644 57-350 (486)
154 COG3898 Uncharacterized membra 97.5 0.084 1.8E-06 54.0 24.4 236 390-639 133-387 (531)
155 TIGR02795 tol_pal_ybgF tol-pal 97.5 0.0014 3.1E-08 57.3 11.2 59 584-642 42-103 (119)
156 PRK10153 DNA-binding transcrip 97.5 0.0041 8.9E-08 69.1 17.0 140 475-616 334-488 (517)
157 PF09976 TPR_21: Tetratricopep 97.5 0.0063 1.4E-07 55.6 15.6 125 480-608 14-145 (145)
158 TIGR02795 tol_pal_ybgF tol-pal 97.4 0.0022 4.7E-08 56.2 11.3 103 516-618 5-113 (119)
159 CHL00033 ycf3 photosystem I as 97.4 0.0065 1.4E-07 57.1 15.0 109 478-614 35-153 (168)
160 PF13432 TPR_16: Tetratricopep 97.4 0.00057 1.2E-08 52.5 6.3 57 587-643 3-59 (65)
161 PRK15331 chaperone protein Sic 97.3 0.003 6.5E-08 57.2 11.4 100 544-643 31-133 (165)
162 PRK02603 photosystem I assembl 97.3 0.0041 8.9E-08 58.7 13.2 130 477-630 34-166 (172)
163 PLN03088 SGT1, suppressor of 97.3 0.0019 4.1E-08 68.7 11.9 103 485-591 9-113 (356)
164 KOG3060 Uncharacterized conser 97.3 0.018 3.8E-07 55.4 16.6 149 481-634 55-207 (289)
165 KOG2053 Mitochondrial inherita 97.3 0.54 1.2E-05 53.5 40.1 65 583-647 438-505 (932)
166 KOG0553 TPR repeat-containing 97.3 0.0016 3.4E-08 64.2 9.4 88 556-643 88-177 (304)
167 PF04840 Vps16_C: Vps16, C-ter 97.2 0.22 4.7E-06 51.8 25.6 107 349-471 180-286 (319)
168 CHL00033 ycf3 photosystem I as 97.2 0.0019 4.1E-08 60.8 9.8 92 549-640 35-138 (168)
169 PF13431 TPR_17: Tetratricopep 97.2 0.00022 4.7E-09 46.4 2.3 32 604-635 2-33 (34)
170 PF14559 TPR_19: Tetratricopep 97.2 0.00082 1.8E-08 52.2 5.7 51 593-643 3-53 (68)
171 PF04840 Vps16_C: Vps16, C-ter 97.2 0.37 8E-06 50.1 30.2 121 451-591 181-301 (319)
172 PRK02603 photosystem I assembl 97.2 0.003 6.6E-08 59.6 10.7 80 551-630 37-121 (172)
173 KOG1538 Uncharacterized conser 97.2 0.086 1.9E-06 57.1 21.7 193 354-608 640-844 (1081)
174 PF13432 TPR_16: Tetratricopep 97.1 0.0013 2.9E-08 50.4 6.2 61 555-615 3-65 (65)
175 PF05843 Suf: Suppressor of fo 97.1 0.01 2.2E-07 60.8 14.4 136 479-617 2-143 (280)
176 COG4235 Cytochrome c biogenesi 97.0 0.0045 9.7E-08 61.5 10.4 101 547-647 154-259 (287)
177 PRK10153 DNA-binding transcrip 97.0 0.011 2.3E-07 65.9 14.6 145 507-656 331-493 (517)
178 cd00189 TPR Tetratricopeptide 97.0 0.0061 1.3E-07 50.1 9.9 59 481-540 3-61 (100)
179 PF13371 TPR_9: Tetratricopept 97.0 0.0019 4E-08 51.0 6.2 56 588-643 2-57 (73)
180 COG4700 Uncharacterized protei 96.9 0.017 3.6E-07 52.8 12.1 102 541-642 81-187 (251)
181 PF14559 TPR_19: Tetratricopep 96.9 0.0012 2.6E-08 51.2 4.4 63 561-623 3-67 (68)
182 PF12895 Apc3: Anaphase-promot 96.7 0.004 8.6E-08 50.7 5.9 80 491-574 2-83 (84)
183 PF10037 MRP-S27: Mitochondria 96.7 0.034 7.3E-07 59.5 14.3 120 407-526 61-186 (429)
184 KOG2041 WD40 repeat protein [G 96.7 1.1 2.3E-05 49.6 25.2 127 156-301 747-877 (1189)
185 PF14938 SNAP: Soluble NSF att 96.7 0.94 2E-05 46.6 26.8 96 481-576 158-264 (282)
186 PF06239 ECSIT: Evolutionarily 96.7 0.014 3E-07 55.2 9.7 98 467-565 34-154 (228)
187 PF13281 DUF4071: Domain of un 96.6 0.29 6.4E-06 51.3 20.0 159 453-614 147-338 (374)
188 PF14938 SNAP: Soluble NSF att 96.6 0.12 2.7E-06 53.0 17.5 93 522-614 123-229 (282)
189 PF12688 TPR_5: Tetratrico pep 96.6 0.054 1.2E-06 47.1 12.2 91 484-574 7-100 (120)
190 PF08579 RPM2: Mitochondrial r 96.5 0.037 7.9E-07 46.4 10.3 81 379-459 27-116 (120)
191 PF05843 Suf: Suppressor of fo 96.5 0.071 1.5E-06 54.7 15.0 126 379-506 3-135 (280)
192 PF13428 TPR_14: Tetratricopep 96.5 0.0036 7.8E-08 43.6 3.8 42 582-623 2-43 (44)
193 KOG2280 Vacuolar assembly/sort 96.5 2.1 4.5E-05 48.0 27.5 336 205-573 427-794 (829)
194 PF13414 TPR_11: TPR repeat; P 96.5 0.0046 1E-07 48.0 4.7 64 549-612 3-69 (69)
195 KOG2796 Uncharacterized conser 96.4 0.3 6.4E-06 47.5 17.2 167 349-517 139-323 (366)
196 PRK15363 pathogenicity island 96.4 0.055 1.2E-06 48.9 11.6 92 452-544 40-134 (157)
197 KOG2796 Uncharacterized conser 96.4 0.11 2.3E-06 50.4 13.9 188 22-217 121-326 (366)
198 PLN03098 LPA1 LOW PSII ACCUMUL 96.4 0.013 2.9E-07 61.9 8.7 64 580-643 74-140 (453)
199 PF10037 MRP-S27: Mitochondria 96.3 0.038 8.2E-07 59.1 12.0 80 280-359 107-186 (429)
200 PRK10866 outer membrane biogen 96.3 0.3 6.5E-06 48.8 17.9 52 355-406 41-98 (243)
201 PF08579 RPM2: Mitochondrial r 96.3 0.075 1.6E-06 44.6 10.9 81 480-561 27-116 (120)
202 PF06239 ECSIT: Evolutionarily 96.3 0.086 1.9E-06 50.0 12.4 116 409-539 44-165 (228)
203 PRK10866 outer membrane biogen 96.2 0.38 8.3E-06 48.0 17.7 174 453-643 38-240 (243)
204 KOG1258 mRNA processing protei 96.2 2.7 5.9E-05 46.1 30.2 182 446-630 296-490 (577)
205 PF12688 TPR_5: Tetratrico pep 96.2 0.12 2.5E-06 45.0 12.0 106 383-489 7-117 (120)
206 COG4700 Uncharacterized protei 96.1 0.33 7.2E-06 44.6 15.0 129 509-642 85-220 (251)
207 PRK10803 tol-pal system protei 96.1 0.035 7.5E-07 55.9 10.0 92 552-643 146-245 (263)
208 PF13371 TPR_9: Tetratricopept 96.1 0.015 3.3E-07 45.7 5.9 65 557-621 3-69 (73)
209 KOG2280 Vacuolar assembly/sort 96.1 3.3 7.2E-05 46.5 25.8 117 508-640 679-795 (829)
210 KOG1538 Uncharacterized conser 96.1 1.1 2.3E-05 49.2 20.6 200 212-475 600-801 (1081)
211 PF03704 BTAD: Bacterial trans 96.0 0.11 2.3E-06 47.4 12.0 107 523-643 16-124 (146)
212 KOG0543 FKBP-type peptidyl-pro 95.8 0.07 1.5E-06 55.2 10.4 84 581-690 257-340 (397)
213 PRK10803 tol-pal system protei 95.7 0.13 2.8E-06 51.8 11.8 33 583-615 219-251 (263)
214 KOG1130 Predicted G-alpha GTPa 95.7 0.065 1.4E-06 55.0 9.4 256 387-642 27-342 (639)
215 KOG4555 TPR repeat-containing 95.6 0.092 2E-06 45.1 8.7 90 557-646 51-146 (175)
216 KOG0550 Molecular chaperone (D 95.6 1.7 3.8E-05 45.2 19.3 53 584-636 375-435 (486)
217 KOG1130 Predicted G-alpha GTPa 95.5 0.074 1.6E-06 54.6 9.0 127 414-540 197-342 (639)
218 COG0457 NrfG FOG: TPR repeat [ 95.4 2.8 6.1E-05 40.6 27.3 193 447-643 59-264 (291)
219 PF12921 ATP13: Mitochondrial 95.2 0.13 2.9E-06 45.2 8.8 50 544-593 47-100 (126)
220 PF13525 YfiO: Outer membrane 95.0 1.3 2.9E-05 42.9 16.3 144 480-643 7-169 (203)
221 PRK11906 transcriptional regul 94.9 0.75 1.6E-05 49.1 14.7 141 494-638 274-430 (458)
222 KOG2066 Vacuolar assembly/sort 94.8 9.3 0.0002 43.4 24.0 49 246-294 393-441 (846)
223 PF12921 ATP13: Mitochondrial 94.7 0.34 7.3E-06 42.6 10.0 52 508-559 47-98 (126)
224 PF13424 TPR_12: Tetratricopep 94.7 0.048 1E-06 43.4 4.4 59 583-641 7-72 (78)
225 PF04053 Coatomer_WDAD: Coatom 94.6 0.37 7.9E-06 52.5 12.0 131 489-645 272-403 (443)
226 KOG2041 WD40 repeat protein [G 94.5 9.8 0.00021 42.5 30.3 123 454-587 930-1063(1189)
227 KOG3941 Intermediate in Toll s 94.5 0.25 5.5E-06 48.4 9.4 99 466-565 53-174 (406)
228 COG3898 Uncharacterized membra 94.4 7.5 0.00016 40.4 25.8 220 357-585 165-399 (531)
229 PF07079 DUF1347: Protein of u 94.3 8.8 0.00019 40.8 37.3 353 215-586 133-530 (549)
230 COG4105 ComL DNA uptake lipopr 94.2 4.7 0.0001 39.7 17.4 143 478-644 34-196 (254)
231 PF09205 DUF1955: Domain of un 94.2 3.5 7.6E-05 35.9 14.7 140 489-647 13-152 (161)
232 smart00299 CLH Clathrin heavy 94.1 1.9 4.2E-05 38.8 14.1 66 514-592 70-136 (140)
233 PF03704 BTAD: Bacterial trans 94.1 0.44 9.6E-06 43.4 9.9 70 481-551 65-138 (146)
234 PF00515 TPR_1: Tetratricopept 94.0 0.084 1.8E-06 34.1 3.6 33 582-614 2-34 (34)
235 PF13424 TPR_12: Tetratricopep 94.0 0.16 3.4E-06 40.4 5.9 26 583-608 48-73 (78)
236 PLN03098 LPA1 LOW PSII ACCUMUL 93.9 1.7 3.7E-05 46.4 14.9 61 446-506 74-140 (453)
237 PF07719 TPR_2: Tetratricopept 93.9 0.12 2.5E-06 33.3 4.2 33 582-614 2-34 (34)
238 COG4235 Cytochrome c biogenesi 93.8 0.72 1.6E-05 46.2 11.2 30 477-506 155-184 (287)
239 PF04184 ST7: ST7 protein; In 93.8 1.7 3.8E-05 46.6 14.5 102 517-618 263-383 (539)
240 PRK11906 transcriptional regul 93.8 0.88 1.9E-05 48.6 12.4 114 528-641 273-398 (458)
241 COG0457 NrfG FOG: TPR repeat [ 93.7 7.1 0.00015 37.6 25.6 196 413-613 60-268 (291)
242 PF04184 ST7: ST7 protein; In 93.6 2 4.4E-05 46.0 14.7 218 492-727 182-412 (539)
243 PF07079 DUF1347: Protein of u 93.6 12 0.00025 39.9 35.5 75 567-642 442-522 (549)
244 PF10300 DUF3808: Protein of u 93.4 4.2 9.2E-05 45.0 17.7 115 526-643 246-375 (468)
245 KOG1941 Acetylcholine receptor 93.2 1 2.3E-05 45.8 11.2 120 519-638 128-269 (518)
246 smart00299 CLH Clathrin heavy 93.2 5.8 0.00013 35.6 15.6 125 481-625 10-135 (140)
247 KOG1920 IkappaB kinase complex 93.0 12 0.00026 44.6 20.7 47 557-603 973-1021(1265)
248 PF13512 TPR_18: Tetratricopep 92.8 1.2 2.5E-05 39.8 9.8 59 558-616 19-82 (142)
249 KOG0543 FKBP-type peptidyl-pro 92.8 0.85 1.8E-05 47.5 10.2 138 485-644 215-355 (397)
250 PF13525 YfiO: Outer membrane 92.4 11 0.00024 36.5 19.3 56 385-440 13-70 (203)
251 PF04097 Nic96: Nup93/Nic96; 92.4 14 0.00031 42.5 20.7 162 148-322 116-302 (613)
252 PF09613 HrpB1_HrpK: Bacterial 92.3 3.3 7.1E-05 37.7 12.1 92 519-613 16-109 (160)
253 COG3118 Thioredoxin domain-con 92.1 3.6 7.9E-05 41.2 13.2 117 523-643 144-264 (304)
254 COG1729 Uncharacterized protei 92.1 0.95 2.1E-05 44.8 9.2 89 552-643 145-243 (262)
255 KOG4234 TPR repeat-containing 91.9 0.95 2.1E-05 42.3 8.3 88 558-645 104-198 (271)
256 KOG2114 Vacuolar assembly/sort 91.8 29 0.00063 40.0 26.5 114 48-170 341-458 (933)
257 PF04053 Coatomer_WDAD: Coatom 91.8 3.1 6.8E-05 45.4 13.8 102 354-472 326-427 (443)
258 COG1729 Uncharacterized protei 91.8 1.3 2.8E-05 43.8 9.8 93 480-575 144-241 (262)
259 KOG2114 Vacuolar assembly/sort 91.1 34 0.00074 39.4 29.9 142 148-298 339-485 (933)
260 PF13512 TPR_18: Tetratricopep 91.0 4.3 9.2E-05 36.2 11.3 114 485-615 17-133 (142)
261 PF13281 DUF4071: Domain of un 90.9 20 0.00043 38.0 17.9 73 351-423 146-228 (374)
262 KOG3941 Intermediate in Toll s 90.7 2 4.4E-05 42.3 9.6 99 365-463 53-174 (406)
263 PF10300 DUF3808: Protein of u 90.2 4.9 0.00011 44.6 13.7 81 461-541 247-333 (468)
264 KOG1585 Protein required for f 90.2 19 0.00042 35.1 16.5 199 415-638 34-250 (308)
265 PF04097 Nic96: Nup93/Nic96; 90.1 39 0.00085 39.0 21.3 210 250-474 116-354 (613)
266 COG3118 Thioredoxin domain-con 89.6 25 0.00054 35.5 16.7 155 485-641 141-299 (304)
267 PRK09687 putative lyase; Provi 89.5 27 0.00058 35.7 25.8 76 343-423 203-278 (280)
268 COG5107 RNA14 Pre-mRNA 3'-end 89.4 33 0.00071 36.6 31.3 140 129-273 30-189 (660)
269 KOG4555 TPR repeat-containing 89.2 1.9 4.2E-05 37.3 7.3 87 523-612 53-146 (175)
270 KOG2610 Uncharacterized conser 89.0 3.8 8.3E-05 41.5 10.2 159 490-651 115-283 (491)
271 PRK15331 chaperone protein Sic 88.7 13 0.00029 34.0 12.8 81 459-540 49-132 (165)
272 COG4105 ComL DNA uptake lipopr 88.5 27 0.00059 34.5 21.1 179 447-645 35-234 (254)
273 PF08631 SPO22: Meiosis protei 88.4 32 0.00069 35.2 23.3 66 447-513 121-192 (278)
274 PF13181 TPR_8: Tetratricopept 88.3 0.62 1.3E-05 29.8 3.1 31 583-613 3-33 (34)
275 PF14853 Fis1_TPR_C: Fis1 C-te 88.0 1.6 3.4E-05 31.6 5.2 36 586-621 6-41 (53)
276 COG3629 DnrI DNA-binding trans 87.7 3.5 7.6E-05 41.5 9.3 73 447-519 153-233 (280)
277 KOG2610 Uncharacterized conser 87.6 16 0.00034 37.3 13.5 175 458-637 114-308 (491)
278 PF09613 HrpB1_HrpK: Bacterial 87.5 2.2 4.7E-05 38.8 7.0 52 593-644 22-73 (160)
279 PRK09687 putative lyase; Provi 87.4 37 0.00079 34.7 27.4 236 343-591 34-277 (280)
280 COG3947 Response regulator con 87.4 25 0.00054 35.3 14.5 56 588-643 286-341 (361)
281 COG3629 DnrI DNA-binding trans 87.3 3.8 8.3E-05 41.3 9.3 76 346-421 153-236 (280)
282 PF13176 TPR_7: Tetratricopept 87.1 0.81 1.7E-05 30.0 3.1 25 584-608 2-26 (36)
283 KOG1920 IkappaB kinase complex 86.3 87 0.0019 37.9 22.4 116 453-579 914-1029(1265)
284 KOG4648 Uncharacterized conser 86.0 2.2 4.8E-05 43.2 6.7 93 520-615 104-199 (536)
285 PF13170 DUF4003: Protein of u 85.9 13 0.00029 38.2 12.7 61 495-556 160-224 (297)
286 PF09205 DUF1955: Domain of un 85.8 24 0.00051 31.0 12.5 82 459-542 68-149 (161)
287 PF02259 FAT: FAT domain; Int 85.8 51 0.0011 34.8 20.9 150 476-627 144-304 (352)
288 KOG4279 Serine/threonine prote 85.4 13 0.00029 41.9 12.7 181 379-614 203-399 (1226)
289 TIGR02561 HrpB1_HrpK type III 85.2 4.5 9.8E-05 36.2 7.6 53 593-645 22-74 (153)
290 PF13176 TPR_7: Tetratricopept 85.0 2.1 4.5E-05 28.0 4.2 26 480-505 1-26 (36)
291 PRK11619 lytic murein transgly 84.9 83 0.0018 36.5 31.7 265 346-623 99-384 (644)
292 TIGR02561 HrpB1_HrpK type III 84.8 15 0.00033 33.0 10.6 86 525-613 22-109 (153)
293 PF00515 TPR_1: Tetratricopept 84.7 2.2 4.8E-05 27.2 4.3 28 479-506 2-29 (34)
294 PF13428 TPR_14: Tetratricopep 84.0 3.2 7E-05 28.5 5.1 28 480-507 3-30 (44)
295 COG4785 NlpI Lipoprotein NlpI, 83.6 43 0.00094 32.2 14.2 158 479-643 100-265 (297)
296 PRK12798 chemotaxis protein; R 83.3 68 0.0015 34.2 24.2 205 460-691 125-347 (421)
297 TIGR02508 type_III_yscG type I 82.7 22 0.00049 29.4 9.8 87 428-518 21-107 (115)
298 KOG1941 Acetylcholine receptor 82.0 40 0.00086 35.0 13.6 126 484-609 128-274 (518)
299 COG2976 Uncharacterized protei 81.9 47 0.001 31.4 13.8 114 496-614 70-192 (207)
300 COG5107 RNA14 Pre-mRNA 3'-end 81.0 84 0.0018 33.7 30.3 141 477-621 396-542 (660)
301 PRK10941 hypothetical protein; 80.7 9.8 0.00021 38.4 9.1 61 583-643 183-243 (269)
302 KOG4648 Uncharacterized conser 80.7 5.7 0.00012 40.4 7.2 89 485-584 104-201 (536)
303 PF07035 Mic1: Colon cancer-as 80.6 48 0.0011 30.7 14.3 54 250-303 94-147 (167)
304 KOG1586 Protein required for f 80.0 62 0.0013 31.6 13.9 69 557-625 162-241 (288)
305 PF00637 Clathrin: Region in C 79.9 1.5 3.3E-05 39.6 2.9 86 113-201 12-97 (143)
306 PF02259 FAT: FAT domain; Int 79.8 60 0.0013 34.3 15.7 64 580-643 145-212 (352)
307 PF06552 TOM20_plant: Plant sp 78.9 17 0.00037 33.8 9.1 44 598-641 52-99 (186)
308 PF07719 TPR_2: Tetratricopept 78.2 5.2 0.00011 25.3 4.3 27 480-506 3-29 (34)
309 PF13374 TPR_10: Tetratricopep 77.9 4.3 9.4E-05 27.1 4.1 26 583-608 4-29 (42)
310 PF07721 TPR_4: Tetratricopept 77.9 3.8 8.2E-05 24.4 3.2 24 616-639 2-25 (26)
311 COG4649 Uncharacterized protei 77.2 26 0.00057 32.3 9.6 53 459-511 144-200 (221)
312 PF13170 DUF4003: Protein of u 76.9 54 0.0012 33.8 13.3 126 394-521 79-225 (297)
313 PF00637 Clathrin: Region in C 76.8 2 4.2E-05 38.9 2.6 86 215-303 12-97 (143)
314 PF10602 RPN7: 26S proteasome 76.7 51 0.0011 31.0 12.2 58 449-506 38-101 (177)
315 PF10602 RPN7: 26S proteasome 76.6 21 0.00045 33.6 9.5 95 479-575 37-139 (177)
316 PF06552 TOM20_plant: Plant sp 76.5 12 0.00026 34.8 7.4 53 544-621 63-120 (186)
317 smart00028 TPR Tetratricopepti 76.1 5 0.00011 24.2 3.8 31 583-613 3-33 (34)
318 KOG2066 Vacuolar assembly/sort 76.0 1.6E+02 0.0034 34.1 21.8 141 41-201 392-532 (846)
319 PRK13800 putative oxidoreducta 75.8 2E+02 0.0043 35.1 25.1 50 547-596 787-836 (897)
320 KOG1585 Protein required for f 75.7 86 0.0019 30.9 16.3 46 246-303 92-137 (308)
321 KOG1258 mRNA processing protei 75.5 1.4E+02 0.0031 33.3 26.2 179 345-525 296-487 (577)
322 KOG0276 Vesicle coat complex C 75.4 37 0.00081 37.6 11.8 148 459-640 598-746 (794)
323 PF11207 DUF2989: Protein of u 74.9 14 0.0003 35.2 7.6 74 561-635 119-198 (203)
324 KOG1498 26S proteasome regulat 74.4 1.1E+02 0.0024 32.3 14.3 115 553-667 135-264 (439)
325 cd00923 Cyt_c_Oxidase_Va Cytoc 74.3 24 0.00051 29.1 7.6 48 572-619 33-80 (103)
326 KOG4570 Uncharacterized conser 74.2 30 0.00066 35.1 10.0 98 441-542 58-164 (418)
327 PF13374 TPR_10: Tetratricopep 73.4 8.4 0.00018 25.6 4.6 28 479-506 3-30 (42)
328 KOG0292 Vesicle coat complex C 73.4 8.1 0.00017 44.3 6.5 117 491-639 606-722 (1202)
329 KOG1586 Protein required for f 72.9 98 0.0021 30.3 13.7 18 457-474 24-41 (288)
330 COG4455 ImpE Protein of avirul 72.3 73 0.0016 30.7 11.5 124 481-616 4-140 (273)
331 PF07035 Mic1: Colon cancer-as 71.6 86 0.0019 29.1 14.8 33 235-267 19-51 (167)
332 KOG1308 Hsp70-interacting prot 71.6 3.1 6.8E-05 42.4 2.7 89 561-649 126-216 (377)
333 PF13431 TPR_17: Tetratricopep 71.5 5.9 0.00013 25.5 3.1 24 444-467 10-33 (34)
334 PF08631 SPO22: Meiosis protei 71.3 1.3E+02 0.0027 30.8 23.3 24 480-504 249-272 (278)
335 COG4649 Uncharacterized protei 71.0 89 0.0019 29.0 16.1 119 488-609 68-195 (221)
336 PF13181 TPR_8: Tetratricopept 70.9 6.8 0.00015 24.8 3.4 27 480-506 3-29 (34)
337 TIGR02508 type_III_yscG type I 70.3 62 0.0013 26.9 9.8 61 353-416 46-106 (115)
338 PF13174 TPR_6: Tetratricopept 70.3 5.7 0.00012 24.8 2.9 26 588-613 7-32 (33)
339 KOG3364 Membrane protein invol 70.3 49 0.0011 29.3 9.1 24 590-613 80-103 (149)
340 PF09477 Type_III_YscG: Bacter 70.0 65 0.0014 27.1 9.4 87 427-517 21-107 (116)
341 KOG0890 Protein kinase of the 69.8 3.7E+02 0.0081 35.7 29.2 62 581-644 1670-1731(2382)
342 KOG0276 Vesicle coat complex C 68.6 39 0.00085 37.4 10.1 100 357-473 648-747 (794)
343 KOG0376 Serine-threonine phosp 68.0 11 0.00024 40.4 6.0 84 559-642 14-99 (476)
344 PF15161 Neuropep_like: Neurop 67.7 1.7 3.8E-05 30.7 0.0 15 740-755 12-26 (65)
345 PF11768 DUF3312: Protein of u 67.1 54 0.0012 36.2 10.9 25 451-475 412-436 (545)
346 PF02284 COX5A: Cytochrome c o 65.9 30 0.00065 28.8 6.6 49 572-620 36-84 (108)
347 PF13762 MNE1: Mitochondrial s 65.3 72 0.0016 28.8 9.6 77 248-324 42-128 (145)
348 PF13934 ELYS: Nuclear pore co 64.8 93 0.002 30.6 11.5 106 481-595 79-186 (226)
349 KOG4570 Uncharacterized conser 64.6 47 0.001 33.8 9.0 46 428-473 116-161 (418)
350 PF10345 Cohesin_load: Cohesin 64.3 2.8E+02 0.006 32.2 32.8 203 29-236 18-251 (608)
351 PF13174 TPR_6: Tetratricopept 64.2 9.1 0.0002 23.8 3.0 27 617-643 2-28 (33)
352 cd00923 Cyt_c_Oxidase_Va Cytoc 64.2 49 0.0011 27.3 7.5 62 494-557 23-84 (103)
353 PF04910 Tcf25: Transcriptiona 64.1 2E+02 0.0044 30.6 17.1 99 512-613 99-225 (360)
354 PF10345 Cohesin_load: Cohesin 63.8 2.8E+02 0.0061 32.1 34.4 57 586-642 539-604 (608)
355 PF14853 Fis1_TPR_C: Fis1 C-te 63.2 45 0.00098 24.1 6.5 49 618-692 4-52 (53)
356 PF02284 COX5A: Cytochrome c o 63.1 58 0.0013 27.2 7.8 60 496-557 28-87 (108)
357 PF04190 DUF410: Protein of un 63.0 1.7E+02 0.0038 29.4 14.7 140 387-542 20-170 (260)
358 PF09670 Cas_Cas02710: CRISPR- 62.7 1E+02 0.0022 33.2 12.2 120 489-609 142-269 (379)
359 PF07721 TPR_4: Tetratricopept 62.1 14 0.00031 21.9 3.3 21 249-269 5-25 (26)
360 PF04910 Tcf25: Transcriptiona 61.6 2.3E+02 0.0049 30.3 14.9 64 580-643 99-167 (360)
361 KOG0686 COP9 signalosome, subu 61.5 2.3E+02 0.0049 30.2 16.9 161 448-643 151-332 (466)
362 PF04190 DUF410: Protein of un 60.9 1.9E+02 0.0041 29.2 14.3 34 344-377 88-121 (260)
363 PRK15180 Vi polysaccharide bio 60.9 54 0.0012 35.2 9.2 118 492-613 303-423 (831)
364 PF09986 DUF2225: Uncharacteri 60.8 49 0.0011 32.2 8.6 64 581-644 118-194 (214)
365 PF13929 mRNA_stabil: mRNA sta 60.3 2E+02 0.0044 29.2 13.9 52 242-293 199-255 (292)
366 KOG1550 Extracellular protein 60.2 2.6E+02 0.0057 31.8 15.6 51 595-647 378-429 (552)
367 COG3947 Response regulator con 59.8 2E+02 0.0044 29.2 13.5 50 455-504 287-339 (361)
368 PRK13342 recombination factor 58.7 2.4E+02 0.0052 30.7 14.6 47 379-425 229-278 (413)
369 COG4455 ImpE Protein of avirul 57.3 39 0.00085 32.5 6.8 63 553-615 5-69 (273)
370 KOG0545 Aryl-hydrocarbon recep 57.3 1.4E+02 0.0031 29.4 10.6 55 589-643 238-292 (329)
371 PF13762 MNE1: Mitochondrial s 56.4 1.5E+02 0.0033 26.7 10.7 76 451-526 43-128 (145)
372 PF11207 DUF2989: Protein of u 56.0 81 0.0018 30.1 8.7 13 496-508 124-136 (203)
373 KOG1464 COP9 signalosome, subu 55.6 1.5E+02 0.0033 29.5 10.6 184 459-642 39-259 (440)
374 PF14669 Asp_Glu_race_2: Putat 55.4 1.9E+02 0.0041 27.4 14.7 97 367-473 97-207 (233)
375 PHA02875 ankyrin repeat protei 55.0 3.1E+02 0.0067 29.7 16.5 148 150-311 72-230 (413)
376 PF14427 Pput2613-deam: Pput_2 54.8 32 0.00068 28.8 5.0 59 710-768 44-102 (118)
377 PF14561 TPR_20: Tetratricopep 54.8 25 0.00054 28.8 4.6 40 603-642 10-49 (90)
378 PF07720 TPR_3: Tetratricopept 54.4 24 0.00052 23.1 3.6 32 583-614 3-36 (36)
379 KOG4234 TPR repeat-containing 53.0 1.2E+02 0.0025 29.0 9.0 60 557-616 142-203 (271)
380 PHA02875 ankyrin repeat protei 52.7 3.3E+02 0.0072 29.5 16.7 114 252-374 72-193 (413)
381 PF10579 Rapsyn_N: Rapsyn N-te 52.3 25 0.00054 27.7 3.9 47 525-571 18-65 (80)
382 smart00386 HAT HAT (Half-A-TPR 51.4 22 0.00048 21.7 3.2 29 595-623 1-29 (33)
383 PF13934 ELYS: Nuclear pore co 51.1 1.3E+02 0.0028 29.7 9.8 113 461-582 92-205 (226)
384 KOG4507 Uncharacterized conser 50.7 69 0.0015 35.5 8.2 98 524-624 618-719 (886)
385 COG4785 NlpI Lipoprotein NlpI, 50.4 2.5E+02 0.0054 27.3 15.5 60 346-405 99-161 (297)
386 KOG3824 Huntingtin interacting 49.4 32 0.00069 34.7 5.1 61 560-620 127-189 (472)
387 KOG0403 Neoplastic transformat 49.4 3.7E+02 0.0081 29.0 14.4 365 45-442 218-612 (645)
388 COG4976 Predicted methyltransf 49.3 26 0.00056 33.9 4.3 58 558-615 4-63 (287)
389 KOG3807 Predicted membrane pro 49.0 1.6E+02 0.0036 30.2 10.0 119 484-621 281-402 (556)
390 PF10366 Vps39_1: Vacuolar sor 48.4 1.2E+02 0.0026 25.8 8.0 27 379-405 41-67 (108)
391 PF07163 Pex26: Pex26 protein; 48.4 1.8E+02 0.0039 29.4 10.0 89 485-576 90-185 (309)
392 PF14561 TPR_20: Tetratricopep 48.3 1.5E+02 0.0033 24.2 8.3 63 580-642 21-86 (90)
393 PRK11619 lytic murein transgly 48.1 5E+02 0.011 30.2 38.1 52 556-607 414-465 (644)
394 KOG1550 Extracellular protein 48.1 4.7E+02 0.01 29.8 21.8 77 564-643 454-537 (552)
395 PF09477 Type_III_YscG: Bacter 47.5 1.8E+02 0.0038 24.7 9.5 78 327-407 22-99 (116)
396 PF14863 Alkyl_sulf_dimr: Alky 45.9 67 0.0015 28.8 6.3 68 565-635 57-124 (141)
397 KOG3364 Membrane protein invol 45.5 1.2E+02 0.0026 26.9 7.3 64 510-575 29-97 (149)
398 KOG2062 26S proteasome regulat 45.3 5.5E+02 0.012 29.8 26.7 31 205-238 208-238 (929)
399 PRK15180 Vi polysaccharide bio 45.2 2.2E+02 0.0048 30.9 10.6 139 525-668 301-442 (831)
400 PRK13800 putative oxidoreducta 43.5 7E+02 0.015 30.5 27.7 183 344-541 696-880 (897)
401 KOG4642 Chaperone-dependent E3 42.7 2.1E+02 0.0045 28.2 9.2 81 457-539 20-104 (284)
402 PF15469 Sec5: Exocyst complex 42.2 3E+02 0.0065 25.9 11.4 87 518-620 91-178 (182)
403 KOG2396 HAT (Half-A-TPR) repea 41.4 5.3E+02 0.011 28.5 32.7 102 509-613 455-563 (568)
404 TIGR03504 FimV_Cterm FimV C-te 41.2 55 0.0012 22.6 3.8 23 383-405 5-27 (44)
405 KOG0551 Hsp90 co-chaperone CNS 40.9 1E+02 0.0022 31.8 7.2 90 551-640 83-178 (390)
406 PF07163 Pex26: Pex26 protein; 40.2 2.6E+02 0.0056 28.3 9.7 85 384-470 90-181 (309)
407 PF11846 DUF3366: Domain of un 40.2 72 0.0015 30.4 6.1 36 577-612 140-175 (193)
408 TIGR03504 FimV_Cterm FimV C-te 39.9 65 0.0014 22.2 4.1 24 484-507 5-28 (44)
409 KOG4642 Chaperone-dependent E3 39.6 70 0.0015 31.4 5.6 50 592-641 55-104 (284)
410 PF11838 ERAP1_C: ERAP1-like C 39.5 4.5E+02 0.0098 27.2 17.5 178 361-538 55-262 (324)
411 KOG3507 DNA-directed RNA polym 39.0 11 0.00024 27.2 0.2 11 741-751 20-30 (62)
412 PRK14015 pepN aminopeptidase N 38.8 5.9E+02 0.013 30.9 14.5 118 517-637 718-846 (875)
413 PF08311 Mad3_BUB1_I: Mad3/BUB 38.5 2.1E+02 0.0045 25.1 8.2 42 599-640 81-124 (126)
414 TIGR02414 pepN_proteo aminopep 38.4 6E+02 0.013 30.8 14.4 152 482-637 676-836 (863)
415 KOG3824 Huntingtin interacting 36.8 44 0.00096 33.7 4.0 54 523-579 126-181 (472)
416 COG1747 Uncharacterized N-term 36.8 6.3E+02 0.014 28.0 21.2 158 477-641 98-285 (711)
417 PF12862 Apc5: Anaphase-promot 36.6 79 0.0017 26.0 5.0 51 592-642 9-68 (94)
418 PF11663 Toxin_YhaV: Toxin wit 36.6 33 0.00072 30.1 2.7 32 490-523 107-138 (140)
419 PRK10941 hypothetical protein; 36.2 2E+02 0.0043 29.2 8.7 67 554-620 186-254 (269)
420 PF08225 Antimicrobial19: Pseu 36.1 14 0.00029 20.5 0.2 9 747-755 12-20 (23)
421 TIGR01503 MthylAspMut_E methyl 36.1 57 0.0012 35.2 4.9 123 426-555 68-217 (480)
422 PF13929 mRNA_stabil: mRNA sta 35.9 4.9E+02 0.011 26.6 15.2 51 445-495 200-255 (292)
423 PF06957 COPI_C: Coatomer (COP 35.5 79 0.0017 34.1 5.9 43 572-614 289-333 (422)
424 PF10366 Vps39_1: Vacuolar sor 35.1 1.5E+02 0.0032 25.3 6.5 27 480-506 41-67 (108)
425 COG4896 Uncharacterized protei 35.0 20 0.00043 26.2 1.0 23 732-758 26-50 (68)
426 cd00280 TRFH Telomeric Repeat 34.9 1.6E+02 0.0035 27.7 6.9 36 586-622 116-151 (200)
427 PRK13342 recombination factor 34.8 6.3E+02 0.014 27.5 15.8 101 409-527 173-279 (413)
428 COG5159 RPN6 26S proteasome re 34.6 3.9E+02 0.0085 27.1 9.9 125 383-507 9-154 (421)
429 PF00244 14-3-3: 14-3-3 protei 34.6 4.1E+02 0.0088 26.3 10.5 50 597-646 142-200 (236)
430 PF14689 SPOB_a: Sensor_kinase 34.5 88 0.0019 23.4 4.4 29 512-540 22-50 (62)
431 PF10579 Rapsyn_N: Rapsyn N-te 34.5 1.2E+02 0.0025 24.1 5.1 48 490-537 18-67 (80)
432 PF11846 DUF3366: Domain of un 34.4 1.1E+02 0.0024 29.1 6.5 31 510-540 141-171 (193)
433 PRK11509 hydrogenase-1 operon 34.2 46 0.001 29.5 3.3 73 654-743 30-103 (132)
434 KOG4521 Nuclear pore complex, 34.1 5.3E+02 0.012 31.6 12.4 104 455-566 928-1071(1480)
435 TIGR00686 phnA alkylphosphonat 33.8 22 0.00048 29.7 1.2 32 738-769 16-48 (109)
436 cd08819 CARD_MDA5_2 Caspase ac 33.6 2.2E+02 0.0047 23.1 6.6 39 459-498 48-86 (88)
437 PF14689 SPOB_a: Sensor_kinase 33.4 66 0.0014 24.1 3.6 30 477-506 22-51 (62)
438 COG5431 Uncharacterized metal- 32.9 13 0.00029 30.4 -0.2 16 768-783 42-57 (117)
439 PF13971 Mei4: Meiosis-specifi 32.4 21 0.00045 37.5 1.0 28 709-736 12-40 (375)
440 PRK10564 maltose regulon perip 31.3 69 0.0015 32.6 4.4 41 278-318 259-299 (303)
441 smart00777 Mad3_BUB1_I Mad3/BU 30.5 1.6E+02 0.0034 25.9 6.0 51 583-639 71-123 (125)
442 PF04090 RNA_pol_I_TF: RNA pol 30.0 5E+02 0.011 24.9 10.2 36 478-514 41-76 (199)
443 PF01147 Crust_neurohorm: Crus 29.7 8.9 0.00019 29.7 -1.6 14 739-752 18-31 (73)
444 PF11848 DUF3368: Domain of un 29.5 1.9E+02 0.0041 20.3 5.2 33 388-420 13-45 (48)
445 PF11663 Toxin_YhaV: Toxin wit 29.4 59 0.0013 28.7 3.1 33 388-422 106-138 (140)
446 cd08819 CARD_MDA5_2 Caspase ac 29.0 3.2E+02 0.0069 22.2 6.9 39 358-397 48-86 (88)
447 PF09045 L27_2: L27_2; InterP 29.0 89 0.0019 22.9 3.4 34 677-730 5-38 (58)
448 PF14376 Haem_bd: Haem-binding 28.9 20 0.00043 32.1 0.2 9 742-750 42-50 (137)
449 PRK10564 maltose regulon perip 28.8 1E+02 0.0022 31.4 5.1 45 476-520 254-299 (303)
450 PRK09169 hypothetical protein; 28.5 1.6E+03 0.035 30.3 43.3 466 177-644 125-695 (2316)
451 PF11525 CopK: Copper resistan 28.5 19 0.00042 27.2 0.0 20 760-779 8-27 (73)
452 PF11848 DUF3368: Domain of un 28.4 2.1E+02 0.0045 20.1 5.3 33 489-521 13-45 (48)
453 PF05119 Terminase_4: Phage te 28.0 1.4E+02 0.0031 24.6 5.3 37 668-704 57-93 (100)
454 KOG1524 WD40 repeat-containing 27.9 3E+02 0.0065 30.3 8.5 87 549-638 573-667 (737)
455 KOG4077 Cytochrome c oxidase, 27.6 2.5E+02 0.0053 24.6 6.3 41 572-612 75-115 (149)
456 COG2178 Predicted RNA-binding 27.0 5.6E+02 0.012 24.4 9.1 51 457-507 39-98 (204)
457 KOG2063 Vacuolar assembly/sort 26.7 1.2E+03 0.026 28.2 21.8 27 379-405 506-532 (877)
458 cd02679 MIT_spastin MIT: domai 26.5 40 0.00087 26.8 1.5 41 594-643 21-67 (79)
459 COG0735 Fur Fe2+/Zn2+ uptake r 26.4 2.4E+02 0.0053 25.4 6.8 48 482-529 24-71 (145)
460 COG0790 FOG: TPR repeat, SEL1 26.2 7E+02 0.015 25.3 16.8 181 461-648 55-270 (292)
461 PF15015 NYD-SP12_N: Spermatog 26.1 1.4E+02 0.0031 31.8 5.7 46 591-636 238-283 (569)
462 KOG2422 Uncharacterized conser 26.0 6.7E+02 0.014 28.3 10.8 104 523-626 248-388 (665)
463 PRK11639 zinc uptake transcrip 25.8 2E+02 0.0044 26.7 6.3 39 527-566 39-77 (169)
464 cd08326 CARD_CASP9 Caspase act 25.6 3E+02 0.0065 22.1 6.4 61 433-497 20-80 (84)
465 KOG2168 Cullins [Cell cycle co 25.5 1.2E+03 0.026 27.8 17.7 40 351-390 330-372 (835)
466 COG1488 PncB Nicotinic acid ph 25.4 55 0.0012 35.3 2.8 85 680-767 277-365 (405)
467 KOG4077 Cytochrome c oxidase, 25.4 4E+02 0.0086 23.4 7.2 58 498-557 69-126 (149)
468 KOG1464 COP9 signalosome, subu 25.2 7.1E+02 0.015 25.0 18.7 238 359-604 40-326 (440)
469 smart00638 LPD_N Lipoprotein N 25.0 1.1E+03 0.023 27.0 24.9 55 348-404 312-367 (574)
470 COG2912 Uncharacterized conser 24.7 1.5E+02 0.0032 29.9 5.3 56 585-640 185-240 (269)
471 PF11768 DUF3312: Protein of u 24.7 6.1E+02 0.013 28.5 10.3 56 350-405 412-472 (545)
472 PF12968 DUF3856: Domain of Un 24.5 4.8E+02 0.01 22.8 8.4 58 583-640 57-125 (144)
473 cd02965 HyaE HyaE family; HyaE 24.1 1.3E+02 0.0028 25.8 4.2 73 653-743 22-95 (111)
474 TIGR02710 CRISPR-associated pr 24.0 9.1E+02 0.02 25.9 11.7 52 487-538 139-196 (380)
475 PRK14700 recombination factor 24.0 7E+02 0.015 25.7 10.0 48 379-426 125-175 (300)
476 COG4890 Predicted outer membra 23.9 38 0.00082 21.5 0.7 12 718-729 10-21 (37)
477 PF08311 Mad3_BUB1_I: Mad3/BUB 23.3 4.8E+02 0.01 22.8 7.9 43 430-472 81-124 (126)
478 PF07575 Nucleopor_Nup85: Nup8 23.1 1.2E+03 0.025 26.8 20.2 59 380-440 375-433 (566)
479 KOG4334 Uncharacterized conser 22.5 52 0.0011 35.3 1.8 147 103-257 410-572 (650)
480 COG2976 Uncharacterized protei 22.3 7E+02 0.015 23.9 15.3 87 422-508 99-189 (207)
481 COG0735 Fur Fe2+/Zn2+ uptake r 22.3 4.2E+02 0.0092 23.9 7.5 46 381-426 24-69 (145)
482 PF08967 DUF1884: Domain of un 22.3 97 0.0021 24.5 2.8 27 674-700 7-33 (85)
483 COG4976 Predicted methyltransf 22.0 1.8E+02 0.0039 28.4 5.1 54 592-645 6-59 (287)
484 PF07575 Nucleopor_Nup85: Nup8 21.8 2.5E+02 0.0055 32.1 7.4 24 72-97 149-172 (566)
485 PRK10220 hypothetical protein; 21.7 50 0.0011 27.7 1.2 31 739-769 18-49 (111)
486 PF00322 Endothelin: Endotheli 21.7 38 0.00083 21.1 0.4 8 776-783 4-11 (31)
487 COG5108 RPO41 Mitochondrial DN 21.4 4E+02 0.0087 30.4 8.1 24 483-506 33-56 (1117)
488 PF02607 B12-binding_2: B12 bi 21.1 2.5E+02 0.0054 21.8 5.3 40 388-427 12-51 (79)
489 TIGR02710 CRISPR-associated pr 20.6 1.1E+03 0.023 25.4 11.7 67 522-589 139-211 (380)
490 PF14669 Asp_Glu_race_2: Putat 20.6 7.5E+02 0.016 23.6 13.3 88 274-371 105-206 (233)
491 PF10475 DUF2450: Protein of u 20.3 4.8E+02 0.01 26.8 8.5 52 352-405 104-155 (291)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=9.5e-162 Score=1434.65 Aligned_cols=775 Identities=35% Similarity=0.600 Sum_probs=765.9
Q ss_pred CCCCCChhHHHHHHHhccC---chhHHHHHHHHHHhCCCCChhhHhHHHHHhhCCCChhHHHHHhccCCCCCcchHHHHH
Q 044131 3 MKTPQSRNLFLSLLKGAKT---QSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSIPKPDLFLFNVII 79 (784)
Q Consensus 3 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 79 (784)
.|++|+..+|..++++|.. ...|.++|+.+++.|..+++.++|+||++|+++|++++|+++|++|++||+++||+||
T Consensus 80 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li 159 (857)
T PLN03077 80 LRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLV 159 (857)
T ss_pred cCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHH
Confidence 5789999999999999976 7789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh
Q 044131 80 RGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWV 159 (784)
Q Consensus 80 ~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~ 159 (784)
++|++.|++++|++ +|++|...|+.||.+||+++|++|++.+++..++++|..+++.|+.||++++|+||++|+++|++
T Consensus 160 ~~~~~~g~~~~A~~-~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~ 238 (857)
T PLN03077 160 GGYAKAGYFDEALC-LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDV 238 (857)
T ss_pred HHHHhCCCHHHHHH-HHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCH
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHh
Q 044131 160 KSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKL 239 (784)
Q Consensus 160 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~ 239 (784)
++|+++|++|++||+++||+||.+|+++|++++|+++|++|... |+.||..||+.++.+|+..|+++.|+++|..+.+.
T Consensus 239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~ 317 (857)
T PLN03077 239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL-SVDPDLMTITSVISACELLGDERLGREMHGYVVKT 317 (857)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHH
Q 044131 240 GFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIP 319 (784)
Q Consensus 240 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 319 (784)
|+.||..+||+||++|+++|++++|.++|++|+.||+++||+||.+|++.|++++|+++|++|.+.|+.||..||++++.
T Consensus 318 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~ 397 (857)
T PLN03077 318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397 (857)
T ss_pred CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHH
Q 044131 320 VFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISL 399 (784)
Q Consensus 320 ~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 399 (784)
+|++.|+++.|.++|+.+.+.|+.++..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|+++|+.++|+.+
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~l 477 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIF 477 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHH
Q 044131 400 FQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEV 479 (784)
Q Consensus 400 ~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~ 479 (784)
|++|.. +++||..||+++|.+|++.|+++.++++|..+.+.|+.+|..++|+||++|+|||++++|.++|+.+ .+|++
T Consensus 478 f~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~ 555 (857)
T PLN03077 478 FRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVV 555 (857)
T ss_pred HHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChh
Confidence 999986 6999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDIL 559 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l 559 (784)
+||+||.+|+++|+.++|+++|++|.+.|+.||.+||+.+|.+|++.|++++|.++|+.|.+++|+.|+..||+||+++|
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l 635 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL 635 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 560 GRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 560 ~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
+|+|+++||++++++||++||..+|++|+++|+.||+.+.|+.+++++++++|+++++|++|+|+|+..|+|++|.++|+
T Consensus 636 ~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 636 GRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred HhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchHHHHhhhhhHHHH
Q 044131 640 VVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEK 719 (784)
Q Consensus 640 ~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~k~~~~~~hse~ 719 (784)
.|+++|++|+|||||||++|++|.|++||++||+.++||.+|++|..+|++.||+||++.++ |++||+||+.|++||||
T Consensus 716 ~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~-~~~~~~k~~~~~~hse~ 794 (857)
T PLN03077 716 TMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM-DEIEVSKDDIFCGHSER 794 (857)
T ss_pred HHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc-cccHHHHHHHHHhccHH
Confidence 99999999999999999999999999999999999999999999999999999999999998 55889999999999999
Q ss_pred HHHHHhhccCCCCCeEEEEeccccCCcccchhhhhhhhcCceEEEecCCccccccCCcCCCCC
Q 044131 720 LAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGD 782 (784)
Q Consensus 720 la~~~~l~~~~~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 782 (784)
||||||||+||||+||||+||||||+|||+++||||||+||||||||++|||||+||+|||||
T Consensus 795 la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 857 (857)
T PLN03077 795 LAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKDGECSCGD 857 (857)
T ss_pred HHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998
No 2
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-136 Score=1189.77 Aligned_cols=614 Identities=37% Similarity=0.636 Sum_probs=607.9
Q ss_pred CCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHH
Q 044131 171 EKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTG 250 (784)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 250 (784)
.++.++|+++|.+|.+.|++++|+++|+.|...++..||..||+.++.+|++.++++.|.++|..+++.|+.||..++|.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 35788999999999999999999999999998746889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHH
Q 044131 251 LVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLT 330 (784)
Q Consensus 251 li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 330 (784)
|+++|+++|++++|.++|++|++||+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+..+..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC
Q 044131 331 NCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAP 410 (784)
Q Consensus 331 ~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 410 (784)
+++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|+++|+++||+||.+|+++|+.++|+++|++|...|+.|
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p 323 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 044131 411 NPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGL 490 (784)
Q Consensus 411 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~ 490 (784)
|..||++++.+|++.|.++.|+++|+.+.+.|+.+|..++|+||++|+|+|++++|.++|++|.+||+++||+||.+|++
T Consensus 324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN 403 (697)
T ss_pred CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 044131 491 HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALE 570 (784)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~ 570 (784)
+|+.++|+++|++|.+.|+.||.+||++++.+|++.|++++|.++|+.|.+++|+.|+..||++|+++|+++|++++|.+
T Consensus 404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~ 483 (697)
T PLN03081 404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483 (697)
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999889999999999999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 044131 571 FIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAP 650 (784)
Q Consensus 571 ~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~ 650 (784)
++++|+++|+..+|++|+.+|+.+|+++.|+.+++++++++|+++..|+.|+++|++.|+|++|.++++.|+++|++|.|
T Consensus 484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~ 563 (697)
T PLN03081 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP 563 (697)
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchHHHHhhhhhHHHHHHHHHhhccCC
Q 044131 651 GCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGLIATE 730 (784)
Q Consensus 651 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~k~~~~~~hse~la~~~~l~~~~ 730 (784)
||||||+++++|.|++||.+||+.++||++|++|..+|++.||+||+.+++||+++|+||+.|++||||||||||||+||
T Consensus 564 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~hsekla~a~~l~~~~ 643 (697)
T PLN03081 564 ACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKLAIAFGLINTS 643 (697)
T ss_pred CeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccHHHHHHHHHhccHHHHHHhhCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEeccccCCcccchhhhhhhhcCceEEEecCCccccccCCcCCCCCCC
Q 044131 731 PGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCSCGDYW 784 (784)
Q Consensus 731 ~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 784 (784)
||+||||+||||||+|||+|+||||||+||||||||++|||||+||+|||||||
T Consensus 644 ~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d~w 697 (697)
T PLN03081 644 EWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGDYW 697 (697)
T ss_pred CCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccccC
Confidence 999999999999999999999999999999999999999999999999999999
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4e-84 Score=769.43 Aligned_cols=575 Identities=27% Similarity=0.443 Sum_probs=559.3
Q ss_pred CCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHH
Q 044131 67 IPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVG 146 (784)
Q Consensus 67 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~ 146 (784)
.+.++..++|.++++|++.|++++|+. +|+.|...|++|+..+|..++++|.+.+.+..|.++|+.+.+.|..+++.++
T Consensus 46 ~~~~~~~~~n~~i~~l~~~g~~~~A~~-l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 124 (857)
T PLN03077 46 SSSSSTHDSNSQLRALCSHGQLEQALK-LLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124 (857)
T ss_pred hcccchhhHHHHHHHHHhCCCHHHHHH-HHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHH
Confidence 345778889999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccch
Q 044131 147 AALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQEL 226 (784)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~ 226 (784)
|+||++|+++|+++.|+++|++|++||+++||+||.+|++.|++++|+++|++|... |+.||.+||++++++|+..+++
T Consensus 125 n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~-g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWA-GVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCChhHHHHHHHHhCCccch
Confidence 999999999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcC
Q 044131 227 RLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASA 306 (784)
Q Consensus 227 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 306 (784)
..++++|..+++.|+.||+.++|+||++|+++|++++|.++|++|++||+++||+||.+|++.|++++|+++|++|...|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g 283 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHH
Q 044131 307 ERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAG 386 (784)
Q Consensus 307 ~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~ 386 (784)
+.||..||++++.+|+..|+++.|.++|..+.+.|+.||..+||+|+++|+++|++++|.++|++|..+|+++||+||.+
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~ 363 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISG 363 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHH
Q 044131 387 YTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEA 466 (784)
Q Consensus 387 ~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 466 (784)
|++.|++++|+++|++|...|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.++..++|+||++|+|+|++++|
T Consensus 364 ~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 364 YEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred HHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC
Q 044131 467 RELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFK 546 (784)
Q Consensus 467 ~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 546 (784)
.++|++|.++|+++||+||.+|+++|+.++|+++|++|.. +++||.+||+.+|.+|++.|.+++|.+++..+.+. |+.
T Consensus 444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~ 521 (857)
T PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIG 521 (857)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCC
Confidence 9999999999999999999999999999999999999986 59999999999999999999999999999999864 999
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc--CCCCCcchHHHHHHH
Q 044131 547 PLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFE--LDPENVGYHVLLSNI 624 (784)
Q Consensus 547 p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~ 624 (784)
|+...+++|+++|+++|++++|.++|+++ +||..+|++++.+|.++|+.++|..+++++.+ ..|+ ..+|..+...
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a 598 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCA 598 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHH
Confidence 99999999999999999999999999998 89999999999999999999999999999987 4576 4567777789
Q ss_pred HHhcCChHHHHHHHHHHH-hCCCcc
Q 044131 625 YSAERDYLQAATVRQVVK-KRKLAK 648 (784)
Q Consensus 625 y~~~g~~~~a~~~~~~m~-~~~~~k 648 (784)
|.+.|++++|.++++.|+ +.|+.+
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P 623 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITP 623 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCC
Confidence 999999999999999998 567764
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=9.5e-72 Score=647.89 Aligned_cols=474 Identities=23% Similarity=0.384 Sum_probs=458.0
Q ss_pred CCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCC-CCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHH
Q 044131 69 KPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTA-LTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGA 147 (784)
Q Consensus 69 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~ 147 (784)
.++.++|+++|.+|.+.|++++|++ +|+.|...+ ..||..||+.++.+|++.++++.+.++|..|.+.|+.||++++|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~-~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n 162 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALE-LFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN 162 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHH-HHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence 4577899999999999999999999 999998764 78999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchh
Q 044131 148 ALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELR 227 (784)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~ 227 (784)
.|+++|+++|++++|+++|++|++||+++||+||.+|++.|++++|+++|++|.+. |+.||..||+.++.+|+..|..+
T Consensus 163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 044131 228 LGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAE 307 (784)
Q Consensus 228 ~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 307 (784)
.|+++|..+.+.|+.+|..++|+||++|+++|++++|.++|++|+++|+++||+||.+|++.|+.++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHH
Q 044131 308 RVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGY 387 (784)
Q Consensus 308 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~ 387 (784)
.||..||++++.+|++.|.++.|.++|..+.+.|+.+|..++|+|+++|+++|++++|.++|++|.++|+++||+||.+|
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHH-cCCCCchhhHhHHHHHHHhcCCHHHH
Q 044131 388 TQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKS-RNFESNIYVSTALIDMYAKCGNIVEA 466 (784)
Q Consensus 388 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~-~g~~~~~~~~~~Li~~y~k~g~~~~A 466 (784)
++.|+.++|+++|++|...|+.||..||+++|.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999986 69999999999999999999999999
Q ss_pred HHHHhhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 044131 467 RELFDLMS-HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHG 544 (784)
Q Consensus 467 ~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 544 (784)
.++|++|+ .|+..+|++|+.+|..+|+.+.|..+++++.+ +.|+ ..+|+.+++.|++.|++++|.++++.|.+. |
T Consensus 482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g 558 (697)
T PLN03081 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-G 558 (697)
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-C
Confidence 99999998 68999999999999999999999999999875 5564 568999999999999999999999999754 7
Q ss_pred CCC
Q 044131 545 FKP 547 (784)
Q Consensus 545 ~~p 547 (784)
+.+
T Consensus 559 ~~k 561 (697)
T PLN03081 559 LSM 561 (697)
T ss_pred Ccc
Confidence 653
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.2e-70 Score=634.20 Aligned_cols=525 Identities=16% Similarity=0.188 Sum_probs=480.8
Q ss_pred CCCChhhHhHHHHHhhCCCChhHHHHHhccCCCCCcchHH-----HHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccH
Q 044131 37 FQNDLSTVTKLAHRLSDFKATCYARALFFSIPKPDLFLFN-----VIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTY 111 (784)
Q Consensus 37 ~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~-----~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~ 111 (784)
-.++...+..+++.|+++|++++|+++|+.|+.++++.|+ .++.+|.+.|...+|+. +|+.|.. ||..||
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~-lf~~M~~----pd~~Ty 440 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFR-FAKLIRN----PTLSTF 440 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHH-HHHHcCC----CCHHHH
Confidence 3467888999999999999999999999999987776655 55667999999999999 9999975 999999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCC----CCCcccHHHHHHHHHcC
Q 044131 112 SFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMP----EKDTVLWNSMISGLMKN 187 (784)
Q Consensus 112 ~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~ 187 (784)
+.+|++|++.++++.|.++|+.|.+.|+.||.++||+||.+|+++|++++|.++|++|. .||+++||+||.+|++.
T Consensus 441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~ 520 (1060)
T PLN03218 441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999998 58999999999999999
Q ss_pred CCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHH--hCCCCchhHHHHHHHHHHhcCChHHHH
Q 044131 188 CCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLK--LGFHDHVYVLTGLVSFYSKCGEVERAE 265 (784)
Q Consensus 188 g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~li~~y~~~g~~~~A~ 265 (784)
|++++|+++|++|... |+.||..||+.++.+|++.|+++.|.++|..|.+ .|+.||..+|++||++|+++|++++|.
T Consensus 521 G~~eeAl~lf~~M~~~-Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~ 599 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSK-NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAK 599 (1060)
T ss_pred cCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999 9999999999999999999999999999999987 689999999999999999999999999
Q ss_pred HHHhcCCC----CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhC
Q 044131 266 LLFRDIVR----PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSG 341 (784)
Q Consensus 266 ~~f~~~~~----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g 341 (784)
++|+.|.+ |+..+||++|.+|++.|++++|+++|++|.+.|+.||..||++++.+|++.|+++.|.++|..|.+.|
T Consensus 600 elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G 679 (1060)
T PLN03218 600 EVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQG 679 (1060)
T ss_pred HHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999954 67799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 044131 342 IVSNSSVLTALSTVYSRLNEMEAARKLFDESS----EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSS 417 (784)
Q Consensus 342 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ 417 (784)
+.||..+|++|+++|+++|++++|.++|++|. .||+++||+||.+|++.|++++|+++|++|...|+.||..||++
T Consensus 680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~s 759 (1060)
T PLN03218 680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759 (1060)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999995 68999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHH----HhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC
Q 044131 418 ILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMY----AKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGH 493 (784)
Q Consensus 418 ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y----~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 493 (784)
++.+|++.|+++.|.++|..|.+.|+.||..+|++|++++ .+++...++...|+.+...+...|+
T Consensus 760 LL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~----------- 828 (1060)
T PLN03218 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT----------- 828 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH-----------
Confidence 9999999999999999999999999999999999999874 4555555555555544444444554
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHH
Q 044131 494 GLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIK 573 (784)
Q Consensus 494 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~ 573 (784)
++|+.+|++|++.|+.||.+||+.+|.++...+..+.+..+++.|... +..|+..+|+++++.+++. .++|..+++
T Consensus 829 -~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~ 904 (1060)
T PLN03218 829 -SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLE 904 (1060)
T ss_pred -HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHH
Confidence 469999999999999999999999997777778888887777776432 6677788999999998543 478999999
Q ss_pred hC---CCCCCHH
Q 044131 574 GL---AVEPGPA 582 (784)
Q Consensus 574 ~m---~~~p~~~ 582 (784)
+| ++.|+..
T Consensus 905 em~~~Gi~p~~~ 916 (1060)
T PLN03218 905 EAASLGVVPSVS 916 (1060)
T ss_pred HHHHcCCCCCcc
Confidence 88 4677654
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=6.5e-66 Score=600.54 Aligned_cols=550 Identities=14% Similarity=0.181 Sum_probs=483.1
Q ss_pred CCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccH-----HHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHH
Q 044131 140 GSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLW-----NSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVA 214 (784)
Q Consensus 140 ~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~ 214 (784)
.++...+..++..|+++|++++|+++|++|+.++.+.| +.++.+|.+.|..++|+++|+.|. . ||..||+
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~---~--pd~~Tyn 441 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR---N--PTLSTFN 441 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC---C--CCHHHHH
Confidence 56778889999999999999999999999998776655 456677999999999999999986 2 9999999
Q ss_pred hHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCeeeHHHHHHHHHhCC
Q 044131 215 AVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIV----RPDLISCNAMISGYTCNG 290 (784)
Q Consensus 215 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~~g 290 (784)
.++++|++.|+++.|.++|..|.+.|+.||..+||+||++|+++|++++|.++|++|. .||+++||+||.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999999999999999999999999999999999999999996 589999999999999999
Q ss_pred CchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHH--hCCCcchHHHHHHHHHHHhcCCHHHHHHH
Q 044131 291 KTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLK--SGIVSNSSVLTALSTVYSRLNEMEAARKL 368 (784)
Q Consensus 291 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~--~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 368 (784)
++++|+++|++|...|+.||..||+.+|.+|++.|+++.|.++|..|.+ .|+.||..+|++|+++|+++|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987 67999999999999999999999999999
Q ss_pred HhhcCCC----ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCC
Q 044131 369 FDESSEK----SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFE 444 (784)
Q Consensus 369 f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 444 (784)
|+.|.+. +..+||++|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|+.|.+.|+.
T Consensus 602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 9999864 568999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhHhHHHHHHHhcCCHHHHHHHHhhcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044131 445 SNIYVSTALIDMYAKCGNIVEARELFDLMS----HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVL 520 (784)
Q Consensus 445 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 520 (784)
||..+|++||++|+++|++++|.++|++|. .||+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++
T Consensus 682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 999999999999999999999999999995 6999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHH----hcC-------------------CHHHHHHHHHhC--
Q 044131 521 YACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILG----RAG-------------------QLEKALEFIKGL-- 575 (784)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~----r~g-------------------~~~eA~~~~~~m-- 575 (784)
.+|++.|++++|.++|+.|.+. |+.||..+|+++++++. +++ ..++|..+|++|
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 9999999999999999999755 99999999999998743 222 347899999999
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCccCCcc
Q 044131 576 -AVEPGPAVWGALLGACMIHKDTNLARVASEKLFE-LDPENVGYHVLLSNIYSAERDY-LQAATVRQVVKKRKLAKAPGC 652 (784)
Q Consensus 576 -~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-l~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~~m~~~~~~k~~g~ 652 (784)
++.||..+|+++++++...+..+.+..+++.+.. -.+.+...|..|.+-+ |++ ++|..+++.|.+.|+.+....
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~~~ 917 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSVSF 917 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCccc
Confidence 5899999999999777788888888888876542 3345566788887765 444 589999999999999754321
Q ss_pred -cEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccc
Q 044131 653 -TLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHD 703 (784)
Q Consensus 653 -s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~ 703 (784)
.| .+-=.+|.|-.|- .-..+...|..|...+..--..|.....+|+
T Consensus 918 ~~~-~~~~d~~~~~~~a----a~~~l~~wl~~~~~~~~~g~~lp~~~~~~~~ 964 (1060)
T PLN03218 918 KKS-PIVIDAEELPVFA----AEVYLLTILKGLKHRLAAGAKLPNVTILLPT 964 (1060)
T ss_pred ccC-ceEEEcccCcchh----HHHHHHHHHHHHHHHHhccCcCCcceeeecc
Confidence 11 1112233443321 1122344555665555433366776666776
No 7
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=100.00 E-value=2.9e-41 Score=289.31 Aligned_cols=106 Identities=66% Similarity=1.041 Sum_probs=99.6
Q ss_pred cccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchHHH--------HhhhhhHHHHHHH
Q 044131 651 GCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEK--------ELMMKVHSEKLAI 722 (784)
Q Consensus 651 g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~k--------~~~~~~hse~la~ 722 (784)
||||+++ |.|++||.+||+. ++..++...||.|++..++||++++++ +..+++|||||||
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 8999987 9999999999998 455677889999999999999988876 6799999999999
Q ss_pred HHhhccCCCCCeEEEEecc-ccCCcccchhhhhhhhcCceEEEecCCcccccc
Q 044131 723 AFGLIATEPGTEIRIIKNL-RVCLDCHTATKFISKVTGRVIVVRDANRFHHFK 774 (784)
Q Consensus 723 ~~~l~~~~~~~~~~~~kn~-r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~ 774 (784)
||||+++ ||+||+ |||+|||+|+|+||+++||+|||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999999 999999 999999999999999999999999999999997
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=5.5e-32 Score=328.52 Aligned_cols=579 Identities=11% Similarity=0.003 Sum_probs=315.8
Q ss_pred HhhCCCChhHHHHHhccCC---CCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchH
Q 044131 50 RLSDFKATCYARALFFSIP---KPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSI 126 (784)
Q Consensus 50 ~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 126 (784)
.|...|+.+.|...|+... ..+...+..+...+.+.|++++|+. .++.+.... +.+...+..+...+...|+.+.
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 381 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIA-TLSPALGLD-PDDPAALSLLGEAYLALGDFEK 381 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHH-HHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 3444455555555544431 1223334444445555555555555 554444321 2233344444455555555555
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCC---CcccHHHHHHHHHcCCCchHHHHHHHHHHHc
Q 044131 127 GVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEK---DTVLWNSMISGLMKNCCFQDSIWVFGDMVRN 203 (784)
Q Consensus 127 a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 203 (784)
|...+..+.+.. +.+...+..+...|...|+.++|.+.|+..... +...+..++..|.+.|++++|+++++++...
T Consensus 382 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 460 (899)
T TIGR02917 382 AAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK 460 (899)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 555555555443 223344445555555555555555555544321 2233444555555556666666655555542
Q ss_pred CCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHH
Q 044131 204 GGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR---PDLISCN 280 (784)
Q Consensus 204 ~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~ 280 (784)
.+++..++..+...+...|+.+.|.+.+..+++.. +.+...+..+..+|.+.|++++|.+.|+++.. .+..++.
T Consensus 461 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 537 (899)
T TIGR02917 461 --QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAIL 537 (899)
T ss_pred --CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHH
Confidence 33344455555555666666666666666655432 22344455555666666666666666655532 2344555
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC
Q 044131 281 AMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLN 360 (784)
Q Consensus 281 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g 360 (784)
.+...+.+.|+.++|..+|+++...+ +.+...+..+...+...|+++.+..++..+.+.. +.+..++..+...|.+.|
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 55566666666666666666655442 2233444555555666666666666666555432 344555666666666666
Q ss_pred CHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHH
Q 044131 361 EMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHEL 437 (784)
Q Consensus 361 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 437 (784)
++++|...|+.+.+ .+...|..+...|.+.|++++|...|+++.... +.+..++..+...+...|+++.|..+++.
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 66666666655432 244455566666666666666666666655432 22345555555666666666666666666
Q ss_pred HHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044131 438 VKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS--HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT 515 (784)
Q Consensus 438 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 515 (784)
+.+.. +.+...+..+...|.+.|++++|.+.|+.+. .|+..++..++.++.+.|+.++|.+.++++.+.. +.+...
T Consensus 695 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~ 772 (899)
T TIGR02917 695 LQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVL 772 (899)
T ss_pred HHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 65543 3445555556666666666666666666554 2444555556666666666666666666665542 334455
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 044131 516 FLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMI 593 (784)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~ 593 (784)
+..+...|...|+.++|.++|+.+.+. -+++...+..+..++.+.|+ ++|+++++++ ...| ++.+|..+..++..
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 555556666666666666666666532 12335556666666666666 5566666554 2233 34455566666666
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 594 HKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 594 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
.|++++|...++++++.+|.++..+..++.+|.+.|++++|.++++.|.
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6666666666666666666666666666666666666666666666553
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.8e-31 Score=322.36 Aligned_cols=588 Identities=12% Similarity=0.054 Sum_probs=348.8
Q ss_pred hhhHhHHHHHhhCCCChhHHHHHhccCCC--C-CcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcc-cHHHHHH
Q 044131 41 LSTVTKLAHRLSDFKATCYARALFFSIPK--P-DLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNF-TYSFVLS 116 (784)
Q Consensus 41 ~~~~~~l~~~y~~~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~-t~~~ll~ 116 (784)
..++..+...|...|++++|...|+.+.+ | +...+......+...|++++|+. .++...+.+ |+.. .+..+-.
T Consensus 227 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~-~~~~~l~~~--~~~~~~~~~~~~ 303 (899)
T TIGR02917 227 PAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARE-TLQDALKSA--PEYLPALLLAGA 303 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHH-HHHHHHHhC--CCchhHHHHHHH
Confidence 34444445555555555555555544321 1 11111111122234455555555 554444322 2211 1122223
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHH
Q 044131 117 AASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCCFQDS 193 (784)
Q Consensus 117 ~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 193 (784)
.+...|+++.|...+..+++.. +.+......+...+.+.|++++|...++.+.. .+...|+.+...+.+.|++++|
T Consensus 304 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 382 (899)
T TIGR02917 304 SEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKA 382 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3445666777777777666654 33455566677777777777777777776653 2455677777777777777777
Q ss_pred HHHHHHHHHcCCCCC-ChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 044131 194 IWVFGDMVRNGGTWL-DSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIV 272 (784)
Q Consensus 194 ~~l~~~m~~~~g~~p-d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 272 (784)
.+.|+++.+. .| +...+..+...+...|+.+.|...+..+.+.... +......++..|.+.|++++|.++++.+.
T Consensus 383 ~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 383 AEYLAKATEL---DPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHHHHHHHhc---CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7777777643 23 3334444555555666666666666665554321 12233334444444555555554444442
Q ss_pred C---CCeeeHHHHHHHHHhCCCchHHHH----------------------------------HHHHHHHcCCCCChhhHH
Q 044131 273 R---PDLISCNAMISGYTCNGKTESSLR----------------------------------LFRQLLASAERVNSSTIV 315 (784)
Q Consensus 273 ~---~d~~~~~~li~~~~~~g~~~~A~~----------------------------------l~~~m~~~g~~p~~~t~~ 315 (784)
. .+..+|+.+...|...|++++|.+ .|+++.... +.+..++.
T Consensus 459 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~ 537 (899)
T TIGR02917 459 KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAIL 537 (899)
T ss_pred HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHH
Confidence 2 233344444444444444444444 444444332 12333444
Q ss_pred hHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCC
Q 044131 316 GLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGL 392 (784)
Q Consensus 316 ~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 392 (784)
.+...+...|+.+.+...+..+.+.+ +.+...+..+...|.+.|++++|..+++.+.. .+...|..+...|.+.|+
T Consensus 538 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 538 ALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Confidence 44444445555555555555544433 23344455555556666666666666655432 244566666666666666
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhh
Q 044131 393 TEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDL 472 (784)
Q Consensus 393 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 472 (784)
+++|+..|+++.... +.+...+..+..++...|++++|..++..+.+.. +.+...+..++..+.+.|++++|.++++.
T Consensus 617 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 617 LNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666665532 2234455556666666666666666666666543 34455666666666666777777666666
Q ss_pred cCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCc
Q 044131 473 MSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLA 549 (784)
Q Consensus 473 ~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 549 (784)
+.+ .+...|..+...+...|++++|++.|+++... .|+..++..+..++.+.|+.++|.+.++.+.+. .+.+.
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~ 770 (899)
T TIGR02917 695 LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDA 770 (899)
T ss_pred HHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCH
Confidence 652 34556666777777777777777777777764 355566667777777788888888887777653 23346
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 550 EHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 550 ~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
..+..+...|.+.|++++|.+.++++. .++++.++..+...+...|+ +.|...+++++++.|+++..+..++.+|..
T Consensus 771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 677778888888888888888887762 34466788888888888888 778888888888888888888888888888
Q ss_pred cCChHHHHHHHHHHHhCC
Q 044131 628 ERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 628 ~g~~~~a~~~~~~m~~~~ 645 (784)
.|++++|.+.++.+.+.+
T Consensus 850 ~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIA 867 (899)
T ss_pred cCCHHHHHHHHHHHHhhC
Confidence 888888888888877643
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=7.4e-23 Score=250.08 Aligned_cols=603 Identities=12% Similarity=0.040 Sum_probs=442.9
Q ss_pred chhHHHHHHHHHHhCCCC-ChhhHhHHHHHhhCCCChhHHHHHhccCCC--CCcc-hH----------------HHHHHH
Q 044131 22 QSQLTQTHAQIIIHGFQN-DLSTVTKLAHRLSDFKATCYARALFFSIPK--PDLF-LF----------------NVIIRG 81 (784)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~--~~~~-~~----------------~~li~~ 81 (784)
...+++...+++. +.| |+.++..+...+.+.|+.++|.+.+++..+ |+.. .+ ..+.+.
T Consensus 44 ~d~a~~~l~kl~~--~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~l 121 (1157)
T PRK11447 44 EDLVRQSLYRLEL--IDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARL 121 (1157)
T ss_pred hHHHHHHHHHHHc--cCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 3344444444443 233 577788888999999999999999998743 3322 22 222345
Q ss_pred HhcCCCchhHHHHHHHHHhhCCCCCCccc-HHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChH
Q 044131 82 FSNNEMPKSSICFYTHLRKNTALTPDNFT-YSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVK 160 (784)
Q Consensus 82 ~~~~g~~~~a~~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~ 160 (784)
+...|++++|++ .++..... .+|+... ...........++.++|...++.+++.. +.+......|..+|.+.|+.+
T Consensus 122 l~~~g~~~eA~~-~~~~~l~~-~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 122 LATTGRTEEALA-SYDKLFNG-APPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHhCCCHHHHHH-HHHHHccC-CCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHH
Confidence 788999999999 99888764 2333221 1111122335688999999999999885 446778889999999999999
Q ss_pred HHHHHhccCCCCCc------ccH-----------------HHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHH
Q 044131 161 SARKVFDKMPEKDT------VLW-----------------NSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVL 217 (784)
Q Consensus 161 ~A~~~f~~~~~~~~------~~~-----------------~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll 217 (784)
+|.+.|+++..... ..| ...+..+-.....++|...+.++... ...|+... ...-
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~-~~dp~~~~-~~~G 276 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQ-LADPAFRA-RAQG 276 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHh-ccCcchHH-HHHH
Confidence 99999998754221 112 11111122222234555555555433 22333221 1223
Q ss_pred HHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCe---eeHHHH----------
Q 044131 218 PAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR--PDL---ISCNAM---------- 282 (784)
Q Consensus 218 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~d~---~~~~~l---------- 282 (784)
.++...|++++|...+..+++.. +.+..++..|...|.+.|++++|...|++..+ |+. ..|..+
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~ 355 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI 355 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence 45667899999999999999864 34678889999999999999999999998754 322 123322
Q ss_pred --HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC
Q 044131 283 --ISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLN 360 (784)
Q Consensus 283 --i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g 360 (784)
...+.+.|++++|+..|++..... +.+...+..+-..+...|+++.|.+.+..+++.. +.+...+..+...|. .+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~ 432 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQ 432 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hc
Confidence 335678999999999999998863 2345566677888999999999999999999875 345566777878775 46
Q ss_pred CHHHHHHHHhhcCCCC------------hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhhCc
Q 044131 361 EMEAARKLFDESSEKS------------LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAP-NPVTVSSILSACAQLGA 427 (784)
Q Consensus 361 ~~~~A~~~f~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~ 427 (784)
+.++|...++.++... ...+..+...+...|++++|++.|++..+. .| +...+..+...+...|+
T Consensus 433 ~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 433 SPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred CHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 7899999998776432 123555677888999999999999999875 45 45566778888999999
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCC----CHH---------HHHHHHHHHHHcCCH
Q 044131 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHK----SEV---------TWNTMISGYGLHGHG 494 (784)
Q Consensus 428 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~----~~~---------~~~~li~~~~~~g~~ 494 (784)
+++|...++.+++.. +.+......+...+.+.|+.++|...++.+... +.. .+..+...+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999998754 445555556666778899999999999988632 111 123456678899999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHH
Q 044131 495 LEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIK 573 (784)
Q Consensus 495 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~ 573 (784)
++|+.+++. .+++...+..+...+...|+.++|.+.|+...+. .|+ ...+..++.+|...|++++|++.++
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~~g~~~eA~~~l~ 661 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIAQGDLAAARAQLA 661 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999882 3455667778888999999999999999999853 565 7788899999999999999999999
Q ss_pred hCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc------hHHHHHHHHHhcCChHHHHHHHHHHH-hC
Q 044131 574 GLA-VEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVG------YHVLLSNIYSAERDYLQAATVRQVVK-KR 644 (784)
Q Consensus 574 ~m~-~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~m~-~~ 644 (784)
..+ ..|+ ..++..+..++...|+.++|...++++++..|+++. .+..++.+|...|++++|...++... ..
T Consensus 662 ~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~ 741 (1157)
T PRK11447 662 KLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVAS 741 (1157)
T ss_pred HHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc
Confidence 875 4554 557888888999999999999999999998776553 56667999999999999999977654 33
Q ss_pred CC
Q 044131 645 KL 646 (784)
Q Consensus 645 ~~ 646 (784)
|+
T Consensus 742 ~~ 743 (1157)
T PRK11447 742 GI 743 (1157)
T ss_pred CC
Confidence 44
No 11
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.95 E-value=1e-22 Score=248.93 Aligned_cols=585 Identities=11% Similarity=0.050 Sum_probs=433.0
Q ss_pred HHHHHhhCCCChhHHHHHhccCC---CCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHH----------
Q 044131 46 KLAHRLSDFKATCYARALFFSIP---KPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYS---------- 112 (784)
Q Consensus 46 ~l~~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~---------- 112 (784)
..++.+...++.+.|+..++++. ..|...+..++..+.+.|+.++|.+ .+++..+. .|+...+.
T Consensus 33 ~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~-~l~~l~~~--~P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 33 EQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQK-LLDRLSQL--APDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHH-HHHHHHhh--CCCChHHHHHHHHHHhcC
Confidence 34567778899999999998753 3456678888889999999999999 99988773 45554332
Q ss_pred -------HHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHH-HHHHHhhcCCChHHHHHHhccCCCC---CcccHHHHH
Q 044131 113 -------FVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGA-ALVDLYFKFSWVKSARKVFDKMPEK---DTVLWNSMI 181 (784)
Q Consensus 113 -------~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~-~li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li 181 (784)
...+.+...|+.++|.+.++.+.+.. +++..... .+.......|+.++|++.|+++... +...+..+.
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 22235678899999999999998765 33332211 1222233469999999999998753 456788889
Q ss_pred HHHHcCCCchHHHHHHHHHHHcCCCC----------------CChh---hHHhHHHHHhcccchhHHHHHHHHHHHhCCC
Q 044131 182 SGLMKNCCFQDSIWVFGDMVRNGGTW----------------LDST---SVAAVLPAVAEVQELRLGMEIQCLGLKLGFH 242 (784)
Q Consensus 182 ~~~~~~g~~~~A~~l~~~m~~~~g~~----------------pd~~---t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~ 242 (784)
..+.+.|++++|++.|+++... ... ++.. .+...+..+........+...+....+....
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~-~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~d 267 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKS-PAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLAD 267 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhC-CCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccC
Confidence 9999999999999999998654 110 0000 1111122222222334444555444433333
Q ss_pred CchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCh-hhHH---
Q 044131 243 DHVYVLTGLVSFYSKCGEVERAELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNS-STIV--- 315 (784)
Q Consensus 243 ~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~--- 315 (784)
|+.. ...+...+...|++++|...|++..+ .|...+..+...|.+.|++++|+..|++..+....... ..+.
T Consensus 268 p~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 3322 23445677889999999999998744 35677888999999999999999999999876432211 1111
Q ss_pred ---------hHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHH
Q 044131 316 ---------GLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAM 383 (784)
Q Consensus 316 ---------~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~l 383 (784)
..-..+...|++++|...+..+++.. +.+...+..|...|...|++++|.+.|++... .+...+..+
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L 425 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGL 425 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 12335668899999999999999875 45667788899999999999999999998763 345577777
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCC--------CCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHH
Q 044131 384 IAGYTQNGLTEEAISLFQEMQASKVA--------PNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALID 455 (784)
Q Consensus 384 i~~~~~~g~~~~A~~l~~~m~~~g~~--------pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 455 (784)
...|. .++.++|+.+++.+...... .....+......+...|++++|.+.++.+++.. +.+..++..+..
T Consensus 426 ~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~ 503 (1157)
T PRK11447 426 ANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQ 503 (1157)
T ss_pred HHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 77775 46789999988775432100 001234445566778999999999999999875 456778888999
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHH
Q 044131 456 MYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV---------TFLSVLYAC 523 (784)
Q Consensus 456 ~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~---------t~~~ll~a~ 523 (784)
.|.+.|++++|...|+++.+ .+...+..+...+...|+.++|+..++++......++.. .+..+...+
T Consensus 504 ~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l 583 (1157)
T PRK11447 504 DLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRL 583 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999998752 355566666666788999999999998865433223221 234556778
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 044131 524 SHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLAR 601 (784)
Q Consensus 524 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~ 601 (784)
...|+.++|.++++. .+++...+..+.+.+.+.|++++|++.+++. ...| ++..+..+...+...|+.++|+
T Consensus 584 ~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~ 657 (1157)
T PRK11447 584 RDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR 657 (1157)
T ss_pred HHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 899999999999872 2345667788999999999999999999887 3555 5679999999999999999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044131 602 VASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 602 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 645 (784)
..++++.+..|+++..+..++.+|...|++++|.++++.+....
T Consensus 658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999999887643
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.91 E-value=1.6e-19 Score=210.76 Aligned_cols=557 Identities=10% Similarity=0.023 Sum_probs=339.7
Q ss_pred hCCCChhHHHHHhccCC---CCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHH
Q 044131 52 SDFKATCYARALFFSIP---KPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGV 128 (784)
Q Consensus 52 ~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 128 (784)
...|+.++|...|+..- ..+...+..|.+.|...|++++|+. ..++..+ ..|+...|..++... ++...+.
T Consensus 55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~-~~~kAv~--ldP~n~~~~~~La~i---~~~~kA~ 128 (987)
T PRK09782 55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARL-LLEDQLK--RHPGDARLERSLAAI---PVEVKSV 128 (987)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHh--cCcccHHHHHHHHHh---ccChhHH
Confidence 34599999999999753 2346678889999999999999999 8888766 456666666665433 8888999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHH--------hhcCCChHHHHHHhccCCCCC--cc-cHHHHHHHHHcCCCchHHHHHH
Q 044131 129 LLHGHAIVSGYGSDLFVGAALVDL--------YFKFSWVKSARKVFDKMPEKD--TV-LWNSMISGLMKNCCFQDSIWVF 197 (784)
Q Consensus 129 ~~~~~~~~~g~~~d~~~~~~li~~--------y~~~g~~~~A~~~f~~~~~~~--~~-~~~~li~~~~~~g~~~~A~~l~ 197 (784)
.+++.+.+.. +.+..++..+... |.+.+...+|++ .+...++ .. ..-.+...|.+.|++++|++++
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL 205 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY 205 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 9999999886 3344555555555 888877777777 3333343 33 3444488999999999999999
Q ss_pred HHHHHcCCCCCChhh-HHhHHHHHhc-ccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--
Q 044131 198 GDMVRNGGTWLDSTS-VAAVLPAVAE-VQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR-- 273 (784)
Q Consensus 198 ~~m~~~~g~~pd~~t-~~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-- 273 (784)
.++.+. + |.... ...+-.++.. .++ +.+..++.. .+..|+.+...+.+.|.+.|+.++|.+++++++.
T Consensus 206 ~~L~k~-~--pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 206 NEARQQ-N--TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHhc-C--CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 999976 3 33333 4445556665 355 666666432 4447889999999999999999999999998843
Q ss_pred ---CCeeeHHH------------------------------HHHHHHhCCCchHHHHHHHHHHHcCCCCChhhH------
Q 044131 274 ---PDLISCNA------------------------------MISGYTCNGKTESSLRLFRQLLASAERVNSSTI------ 314 (784)
Q Consensus 274 ---~d~~~~~~------------------------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~------ 314 (784)
|+..+|-- ++.-+.+.++++-+.++.. ..|.....
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~ 351 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAV 351 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhh
Confidence 22222211 1333445555554443311 22222211
Q ss_pred ----------------------------HhHHHhhcCCCChhHHHHHHHHHHHh-C-CCcchHHHHHHHHHHHhcCCH--
Q 044131 315 ----------------------------VGLIPVFYPFGHLHLTNCIHSFCLKS-G-IVSNSSVLTALSTVYSRLNEM-- 362 (784)
Q Consensus 315 ----------------------------~~ll~~~~~~~~~~~a~~i~~~~~~~-g-~~~~~~~~~~Li~~y~~~g~~-- 362 (784)
.-+--.....|+.++|.+++...... + -..+..+.+-|++.|.+.+.+
T Consensus 352 ~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 431 (987)
T PRK09782 352 SVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT 431 (987)
T ss_pred ccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence 11111122344555555555554431 1 112344555666666666552
Q ss_pred -HHHHHH-------------------------HhhcC---CC--ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 044131 363 -EAARKL-------------------------FDESS---EK--SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN 411 (784)
Q Consensus 363 -~~A~~~-------------------------f~~~~---~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 411 (784)
..+..+ +.... .. +...|..+..++.. ++.++|+..|.+.... .|+
T Consensus 432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd 508 (987)
T PRK09782 432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPD 508 (987)
T ss_pred hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCc
Confidence 222111 11111 11 34455556555555 5666677766665543 355
Q ss_pred HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHH---HHHHH
Q 044131 412 PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNT---MISGY 488 (784)
Q Consensus 412 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~---li~~~ 488 (784)
......+..++...|+++.|...++.+... +|+......+...+.+.|++++|...|+...+.+...++. +....
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l 586 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQR 586 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 444333344445667777777777665443 2333334455566666777777777776655322222222 22222
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHH
Q 044131 489 GLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEK 567 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~e 567 (784)
...|++++|+..|++..+ ..|+...+..+..++.+.|+.++|...|+... .+.|+ ...+..+...|...|++++
T Consensus 587 ~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 587 YIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 334777777777777766 34566666666667777777777777777665 33454 5556666666777777777
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 568 ALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 568 A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
|++.+++. ...| ++..|..+..++...|+++.|+..++++++++|++.......+++..+..+++.+.+-++.-
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~ 737 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRR 737 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 77776654 2444 34466777777777777777777777777777777777777777777777666666655443
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.90 E-value=1.2e-18 Score=203.64 Aligned_cols=546 Identities=10% Similarity=0.015 Sum_probs=382.2
Q ss_pred HHHHHHHH--hcCCCchhHHHHHHHHHhhCCCCCC-cccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044131 75 FNVIIRGF--SNNEMPKSSICFYTHLRKNTALTPD-NFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVD 151 (784)
Q Consensus 75 ~~~li~~~--~~~g~~~~a~~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~ 151 (784)
+--+..++ ...|++++|+. .|+...+ +.|+ ...+..+.+.+...|+.++|....+..++.. +.|...+..|.
T Consensus 45 ~~~f~~a~~~~~~Gd~~~A~~-~l~~Al~--~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La- 119 (987)
T PRK09782 45 YPRLDKALKAQKNNDEATAIR-EFEYIHQ--QVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLA- 119 (987)
T ss_pred HHHHHHHHHHHhCCCHHHHHH-HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHH-
Confidence 33444444 34599999999 9998876 4454 4566777889999999999999999999885 34555555552
Q ss_pred HhhcCCChHHHHHHhccCCC--CC-cccHHHHHHH--------HHcCCCchHHHHHHHHHHHcCCCCCChhhHHhH-HHH
Q 044131 152 LYFKFSWVKSARKVFDKMPE--KD-TVLWNSMISG--------LMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAV-LPA 219 (784)
Q Consensus 152 ~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~--------~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l-l~a 219 (784)
.+ ++.++|..+++++.. |+ ...+..+... |.+.+...+++ + .... ...|+..+.... ...
T Consensus 120 ~i---~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~-~~~~~~~vL~L~~~rl 191 (987)
T PRK09782 120 AI---PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQL---N-DATF-AASPEGKTLRTDLLQR 191 (987)
T ss_pred Hh---ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHH---H-Hhhh-CCCCCcHHHHHHHHHH
Confidence 22 889999999999974 32 3333333333 66664444444 4 3322 444456655555 899
Q ss_pred HhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-cCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHH
Q 044131 220 VAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSK-CGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRL 298 (784)
Q Consensus 220 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~-~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l 298 (784)
+...++++.+..++..+.+.+.. +..-...|...|.. .++ +.|..+++...+.|...+..+...|.+.|+.++|.++
T Consensus 192 Y~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~ 269 (987)
T PRK09782 192 AIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHY 269 (987)
T ss_pred HHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999998744 45556777778888 477 9999998876667888999999999999999999999
Q ss_pred HHHHHHcCCC-CChhhHHhHHH------------------------------hhcCCCChhHHHHHHHH--------HHH
Q 044131 299 FRQLLASAER-VNSSTIVGLIP------------------------------VFYPFGHLHLTNCIHSF--------CLK 339 (784)
Q Consensus 299 ~~~m~~~g~~-p~~~t~~~ll~------------------------------~~~~~~~~~~a~~i~~~--------~~~ 339 (784)
++++...-.. |+..++.-.+. .+.+.++.+.+.++.+. +.-
T Consensus 270 L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~ 349 (987)
T PRK09782 270 LIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERY 349 (987)
T ss_pred HHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHH
Confidence 9998654322 44444333322 22223333333322110 000
Q ss_pred hCC--------------------CcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC-C-----ChhHHHHHHHHHHhCCC-
Q 044131 340 SGI--------------------VSNSSVLTALSTVYSRLNEMEAARKLFDESSE-K-----SLASWNAMIAGYTQNGL- 392 (784)
Q Consensus 340 ~g~--------------------~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~- 392 (784)
.+. +.+....--+.-...+.|+.++|.++|+..-. + +...-+-++..|.+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 429 (987)
T PRK09782 350 AVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYL 429 (987)
T ss_pred hhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcc
Confidence 000 11222222222333456788888888877544 1 22234466777777665
Q ss_pred --hhHHHHH------------HHHH----------Hh-CCCCC---CHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCC
Q 044131 393 --TEEAISL------------FQEM----------QA-SKVAP---NPVTVSSILSACAQLGAISLGKWVHELVKSRNFE 444 (784)
Q Consensus 393 --~~~A~~l------------~~~m----------~~-~g~~p---d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 444 (784)
..+++.+ ..+. .. .+..| +...+..+..++.. +..++|...+.......
T Consensus 430 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-- 506 (987)
T PRK09782 430 ATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-- 506 (987)
T ss_pred cchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--
Confidence 3344333 1111 11 11223 34455555544444 78888988777776653
Q ss_pred CchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHH
Q 044131 445 SNIYVSTALIDMYAKCGNIVEARELFDLMSH--KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG-VTFLSVLY 521 (784)
Q Consensus 445 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~ 521 (784)
|+......+...+...|++++|...|+++.. ++...|..+...+.+.|+.++|...|++..+.. |+. ..+..+..
T Consensus 507 Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~ 584 (987)
T PRK09782 507 PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHA 584 (987)
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHH
Confidence 4443333445555789999999999997763 555667778888999999999999999999854 444 33444445
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHH
Q 044131 522 ACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNL 599 (784)
Q Consensus 522 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~ 599 (784)
.....|++++|...|++.. .+.|+...|..+..++.+.|+.++|+..+++. ...|+ ...+..+..++...|+.++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHhCCCHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 5667799999999999987 45788889999999999999999999999887 46665 5588888889999999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 600 ARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 600 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|+..++++++++|+++..+..++.+|...|+.++|...++...+
T Consensus 662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887765
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.87 E-value=5.2e-19 Score=182.84 Aligned_cols=449 Identities=12% Similarity=0.105 Sum_probs=352.6
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHH-HHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044131 177 WNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLP-AVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFY 255 (784)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 255 (784)
-..|..-..+.|++++|.+.-...-++ .|+..--..++. .+.+..+++...+--...++.. +--..+|+.+.+.+
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~---d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQE---DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANIL 126 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhcc---CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHH
Confidence 344555566778888887765444322 222222222222 2333444444333333333321 22456788899999
Q ss_pred HhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhh-cCCCChhHHH
Q 044131 256 SKCGEVERAELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVF-YPFGHLHLTN 331 (784)
Q Consensus 256 ~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~~~a~ 331 (784)
-..|++++|...++.+.+ ..+..|..+..++...|+.+.|.+.|.+.++. .|+.+...+-+..+ ...|.+.++.
T Consensus 127 kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 999999999999998865 35668889999999999999999999988764 56665544433333 3467888888
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 044131 332 CIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSL---ASWNAMIAGYTQNGLTEEAISLFQEMQASKV 408 (784)
Q Consensus 332 ~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 408 (784)
.-+...++.. +.-..+|+.|...+-..|++..|...|++...-|+ ..|-.|-..|...+.+++|+..|.+....
T Consensus 205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-- 281 (966)
T KOG4626|consen 205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-- 281 (966)
T ss_pred HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence 8888777654 23346788899999999999999999998765443 47888999999999999999999888764
Q ss_pred CCC-HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHH
Q 044131 409 APN-PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTM 484 (784)
Q Consensus 409 ~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~l 484 (784)
.|+ .+.+..+...|-..|.++.|+..+++.++.. +.-+..|+.|..++-..|++.+|.+.+.+... .-..+.+.|
T Consensus 282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL 360 (966)
T KOG4626|consen 282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL 360 (966)
T ss_pred CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence 665 4567777777889999999999999998764 33467899999999999999999999998762 346688999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhc
Q 044131 485 ISGYGLHGHGLEALQLFSEMLHSGIRPSG-VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRA 562 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~ 562 (784)
...|...|..++|..+|....+ +.|.- ..++.|...|-..|++++|...+++.+ .|.|+ ...|+.|...|-..
T Consensus 361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHh
Confidence 9999999999999999999988 66764 468899999999999999999999887 78999 78999999999999
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 044131 563 GQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 563 g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 640 (784)
|+.++|...+.+. .+.|. +...+.|.+.++..|++.+|+..|+.+++++|+.+..|-.|...+.-..+|.+-.+.+++
T Consensus 436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~k 515 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKK 515 (966)
T ss_pred hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHH
Confidence 9999999999876 57786 448999999999999999999999999999999999999999998888999885444433
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.82 E-value=4.4e-18 Score=185.53 Aligned_cols=306 Identities=15% Similarity=0.112 Sum_probs=209.5
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCC-hhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcC
Q 044131 184 LMKNCCFQDSIWVFGDMVRNGGTWLD-STSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHD---HVYVLTGLVSFYSKCG 259 (784)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g 259 (784)
+...|++++|++.|+++.+. .|+ ..++..+...+...|+++.|..++..+++.+..+ ...++..+...|.+.|
T Consensus 45 ~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKV---DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHhcCChHHHHHHHHHHHhc---CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 33445555555555555532 222 2244444444455555555555555544432111 1245677888888889
Q ss_pred ChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHH
Q 044131 260 EVERAELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSF 336 (784)
Q Consensus 260 ~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~ 336 (784)
++++|..+|+++.+ .+..+++.++..+.+.|++++|++.|+.+...+..++...
T Consensus 122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE----------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------------------
Confidence 99999998888855 4566788888888899999999999888876542221100
Q ss_pred HHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH
Q 044131 337 CLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPV 413 (784)
Q Consensus 337 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 413 (784)
....+..+...|.+.|++++|.+.|+++.+ .+...+..+...|.+.|++++|.++|+++...+......
T Consensus 179 --------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 250 (389)
T PRK11788 179 --------IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSE 250 (389)
T ss_pred --------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHH
Confidence 012244566777888888888888887653 245577788888999999999999999988653222245
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHH-
Q 044131 414 TVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS--HKSEVTWNTMISGYGL- 490 (784)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~- 490 (784)
++..+..++...|++++|...+..+.+.. |+...+..++..|.+.|++++|..+|+++. .|+..+++.++..+..
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~ 328 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAE 328 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhc
Confidence 67777888888888888888888887753 455566788888888888888888888765 4778888887777664
Q ss_pred --cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 044131 491 --HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVRE 531 (784)
Q Consensus 491 --~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~ 531 (784)
+|+.++++.+|++|.+.+++|++. .+|++.|...+
T Consensus 329 ~~~g~~~~a~~~~~~~~~~~~~~~p~------~~c~~cg~~~~ 365 (389)
T PRK11788 329 AEEGRAKESLLLLRDLVGEQLKRKPR------YRCRNCGFTAR 365 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhCCCC------EECCCCCCCCc
Confidence 568888888888888877777766 44777775443
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.82 E-value=9.9e-18 Score=173.51 Aligned_cols=413 Identities=13% Similarity=0.129 Sum_probs=328.2
Q ss_pred HHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchH
Q 044131 218 PAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR---PDLISCNAMISGYTCNGKTES 294 (784)
Q Consensus 218 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~ 294 (784)
.-.-+.|++++|++--..+-... +.+....-.+-..|..+.+++....--....+ .-..+|..+...+-..|+.++
T Consensus 56 h~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~ 134 (966)
T KOG4626|consen 56 HRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQD 134 (966)
T ss_pred HHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHH
Confidence 33445677777766444432221 12222222233556666666654433222222 234578889999999999999
Q ss_pred HHHHHHHHHHcCCCC-ChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCCHHHHHHHHhhc
Q 044131 295 SLRLFRQLLASAERV-NSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNS-SVLTALSTVYSRLNEMEAARKLFDES 372 (784)
Q Consensus 295 A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~-~~~~~Li~~y~~~g~~~~A~~~f~~~ 372 (784)
|+.+|+.|.+. +| ....|..+..++...|+.+.+.+.+...++.. |+. .+.+-+.+.....|++++|...+.+.
T Consensus 135 al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 135 ALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 99999999875 45 35678889999999999999999999888754 433 34455666677789999999988775
Q ss_pred CCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchh
Q 044131 373 SEK---SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN-PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIY 448 (784)
Q Consensus 373 ~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~ 448 (784)
.+. -.+.|+.|...+-..|+...|+..|.+... +.|+ ...|..+-..+...+.++.|...+..+.... +....
T Consensus 211 i~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~ 287 (966)
T KOG4626|consen 211 IETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAV 287 (966)
T ss_pred HhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchh
Confidence 543 346899999999999999999999999886 4666 3467777778888888888888777776543 33566
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHhhcCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH
Q 044131 449 VSTALIDMYAKCGNIVEARELFDLMSH--KS-EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG-VTFLSVLYACS 524 (784)
Q Consensus 449 ~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-~t~~~ll~a~~ 524 (784)
++..|...|-..|.+|-|+..+++..+ |+ ...||.|..++-..|+..+|...|.+.+. +.|+. ...+.|...+.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHH
Confidence 777788889999999999999999874 44 56999999999999999999999999988 45654 57889999999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 044131 525 HAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPA-VWGALLGACMIHKDTNLAR 601 (784)
Q Consensus 525 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~ 601 (784)
..|.+++|..+|.... .+.|. ...++.|...|-..|++++|...+++. .++|+.. .++.+...+...|++..|.
T Consensus 366 E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 9999999999999876 56677 778899999999999999999999876 6889755 9999999999999999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 602 VASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 602 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+.+.+++..+|.-+..+..|+.+|..+|+..+|..-++...+
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 999999999999999999999999999999999998877654
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=1.4e-16 Score=183.18 Aligned_cols=248 Identities=13% Similarity=0.047 Sum_probs=184.2
Q ss_pred CCChhHHHHHHHHHHhCC-CCCC-HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHH
Q 044131 390 NGLTEEAISLFQEMQASK-VAPN-PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEAR 467 (784)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g-~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 467 (784)
.+++++|++.|++....+ ..|+ ...+..+...+...|++++|...++.+++.. +.+...+..+...|...|++++|.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~ 385 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE 385 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence 356777777777777654 2333 3445555556667778888888887777653 334556677777888888888888
Q ss_pred HHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 044131 468 ELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDH 543 (784)
Q Consensus 468 ~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 543 (784)
..|++.. ..+...|..+...|...|++++|+..|++.++. .| +...+..+..++...|+.++|...|+...+.
T Consensus 386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 8887764 245678888888888889999999999888874 44 4456667777888889999999999888743
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCH-------H-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 544 GFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPGP-------A-VWGALLGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 544 ~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~-------~-~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
.|+ ...|..+..+|...|++++|.+.+++. .+.|+. . .++..+..+...|++++|...++++++++|+
T Consensus 463 --~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~ 540 (615)
T TIGR00990 463 --FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPE 540 (615)
T ss_pred --CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 354 677888888899999999999888874 344421 1 1222222334469999999999999999999
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 614 NVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 614 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+...+..|+.+|...|++++|.+.++...+
T Consensus 541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 541 CDIAVATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 988999999999999999999999887654
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=1.4e-17 Score=181.54 Aligned_cols=292 Identities=13% Similarity=0.115 Sum_probs=218.9
Q ss_pred HHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhhCch
Q 044131 355 VYSRLNEMEAARKLFDESSEK---SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN---PVTVSSILSACAQLGAI 428 (784)
Q Consensus 355 ~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t~~~ll~a~~~~~~~ 428 (784)
.+...|++++|...|+++.+. +..+|..+...|.+.|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 445667777777777776543 344677777777888888888888887776432222 24556667777777888
Q ss_pred HHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCC--C------HHHHHHHHHHHHHcCCHHHHHHH
Q 044131 429 SLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHK--S------EVTWNTMISGYGLHGHGLEALQL 500 (784)
Q Consensus 429 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~--~------~~~~~~li~~~~~~g~~~~A~~~ 500 (784)
+.|..++..+.+.. +.+..+++.++..|.+.|++++|.+.|+.+.+. + ...|..+...+.+.|+.++|+..
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888888777653 445667778888888888888888888877531 1 12456677778888999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--cchHHHHHHHHHhcCCHHHHHHHHHhCC-C
Q 044131 501 FSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL--AEHYACMVDILGRAGQLEKALEFIKGLA-V 577 (784)
Q Consensus 501 ~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~ 577 (784)
|+++.+.. +.+...+..+...+...|++++|.++|+++.+. .|+ ...+..++.+|.+.|++++|...++++. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99988743 233456777778888899999999999988743 344 4567888899999999999999998873 5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh--cCChHHHHHHHHHHHhCCCccCCc
Q 044131 578 EPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA--ERDYLQAATVRQVVKKRKLAKAPG 651 (784)
Q Consensus 578 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~--~g~~~~a~~~~~~m~~~~~~k~~g 651 (784)
.|+...+..+...+...|+++.|...++++++..|+++....++...+.. .|+.+++..+++.|.++++++.|.
T Consensus 279 ~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 67777778888899999999999999999999999987555444433322 569999999999999999988886
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.76 E-value=4.7e-15 Score=170.00 Aligned_cols=351 Identities=12% Similarity=0.021 Sum_probs=272.5
Q ss_pred HhcCChHHHHHHHhcCCC------CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhH
Q 044131 256 SKCGEVERAELLFRDIVR------PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHL 329 (784)
Q Consensus 256 ~~~g~~~~A~~~f~~~~~------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~ 329 (784)
.|..+++.-.-.|..-++ .+..-.-.++..+.+.|++++|+.+++..+.....+....+ .+..+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~-~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLR-RWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHH-HHhhhHhhcCCHHH
Confidence 345566666666665544 12333455677888999999999999998887544443333 44455566899999
Q ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 044131 330 TNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQAS 406 (784)
Q Consensus 330 a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (784)
|...+..+++.. +.+...+..+...|...|++++|...|++... .+...|..+...+.+.|++++|...++++...
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~ 173 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE 173 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence 999999988774 45667788899999999999999999998654 35678999999999999999999999988765
Q ss_pred CCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHH
Q 044131 407 KVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNT 483 (784)
Q Consensus 407 g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~ 483 (784)
. |+.......+..+...|++++|...++.+.+..-.++......+...+.+.|++++|...|++... .+...+..
T Consensus 174 ~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~ 251 (656)
T PRK15174 174 V--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS 251 (656)
T ss_pred C--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3 333222222345778899999999999887764334444555667888999999999999998763 46778888
Q ss_pred HHHHHHHcCCHHH----HHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHH
Q 044131 484 MISGYGLHGHGLE----ALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVD 557 (784)
Q Consensus 484 li~~~~~~g~~~~----A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~ 557 (784)
+...|.+.|++++ |+..|++..+. .|+ ...+..+...+...|++++|..+++...+ +.|+ ...+..+..
T Consensus 252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~La~ 326 (656)
T PRK15174 252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMYAR 326 (656)
T ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHH
Confidence 9999999999986 89999999884 454 55788888999999999999999999874 3565 556777889
Q ss_pred HHHhcCCHHHHHHHHHhCC-CCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 558 ILGRAGQLEKALEFIKGLA-VEPGPAVWG-ALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m~-~~p~~~~~~-~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
.|.+.|++++|.+.++++. ..|+...+. .+..++...|+.+.|...++++++.+|++.
T Consensus 327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999998874 567655443 456678899999999999999999999864
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=7.1e-15 Score=172.23 Aligned_cols=357 Identities=12% Similarity=0.082 Sum_probs=219.8
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Q 044131 279 CNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSR 358 (784)
Q Consensus 279 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~ 358 (784)
+..+...+...|++++|+++|++.+... +.+......+...+...|+.+.|...+..+++. .+.+.. +..+..++..
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~ 128 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKR 128 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHH
Confidence 4444444444444444444444443321 111222333333444444444444444444443 133333 5556666666
Q ss_pred cCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH------HHHHHHHHH-----hh
Q 044131 359 LNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPV------TVSSILSAC-----AQ 424 (784)
Q Consensus 359 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~------t~~~ll~a~-----~~ 424 (784)
.|+.++|...+++... .+...+..+...+.+.|..++|++.++.... .|+.. .....+... ..
T Consensus 129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~ 205 (765)
T PRK10049 129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSE 205 (765)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccCh
Confidence 6666666666665443 2344455556666666666666666654432 22210 011111111 11
Q ss_pred hCch---HHHHHHHHHHHHc-CCCCchh--hHhHH---HHHHHhcCCHHHHHHHHhhcCCCC---HH-HHHHHHHHHHHc
Q 044131 425 LGAI---SLGKWVHELVKSR-NFESNIY--VSTAL---IDMYAKCGNIVEARELFDLMSHKS---EV-TWNTMISGYGLH 491 (784)
Q Consensus 425 ~~~~---~~a~~i~~~~~~~-g~~~~~~--~~~~L---i~~y~k~g~~~~A~~~f~~~~~~~---~~-~~~~li~~~~~~ 491 (784)
.+.+ +.|.+.++.+.+. .-.|+.. ...+. +.++...|++++|+..|+.+.+.+ .. .-..+...|...
T Consensus 206 ~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~ 285 (765)
T PRK10049 206 KERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKL 285 (765)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhc
Confidence 1222 5566666666643 1122211 11111 223456688999999998887421 11 112246678889
Q ss_pred CCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC----------CCCC---cchHH
Q 044131 492 GHGLEALQLFSEMLHSGIRPS-----GVTFLSVLYACSHAGLVREGDEIFQSMIHDHG----------FKPL---AEHYA 553 (784)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~pd-----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~~ 553 (784)
|++++|+..|+++.+.. |. ......+..++...|+.++|.++++.+.+... -.|+ ...+.
T Consensus 286 g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~ 363 (765)
T PRK10049 286 HQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQS 363 (765)
T ss_pred CCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHH
Confidence 99999999999887643 32 23456666778889999999999998875311 0122 22445
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 044131 554 CMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDY 631 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 631 (784)
.+..++...|++++|++.++++. ..| +...|..+...+...|+.+.|+..++++++++|+++..++.++.++...|+|
T Consensus 364 ~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~ 443 (765)
T PRK10049 364 LLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEW 443 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCH
Confidence 67788999999999999999873 344 5668999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q 044131 632 LQAATVRQVVKK 643 (784)
Q Consensus 632 ~~a~~~~~~m~~ 643 (784)
++|..+.+.+.+
T Consensus 444 ~~A~~~~~~ll~ 455 (765)
T PRK10049 444 RQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHHH
Confidence 999999988865
No 21
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.76 E-value=1.2e-13 Score=151.46 Aligned_cols=575 Identities=15% Similarity=0.124 Sum_probs=391.8
Q ss_pred hhHHHHHhccCCC--C-CcchHHHHHHHHhcCCCchhHHHHHHHHHhh--CCCCCCcccHHHHHHHHhcCCCchHHHHHH
Q 044131 57 TCYARALFFSIPK--P-DLFLFNVIIRGFSNNEMPKSSICFYTHLRKN--TALTPDNFTYSFVLSAASACCDRSIGVLLH 131 (784)
Q Consensus 57 ~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 131 (784)
+++|.+.|....+ | |+...-.=.......+++..|+. +|..... ...+||...- +-..+.+.++.+.|+..+
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~-yyk~al~inp~~~aD~rIg--ig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALK-YYKKALRINPACKADVRIG--IGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHH-HHHHHHhcCcccCCCccch--hhhHHHhccchhhHHHHH
Confidence 4777777776532 3 33222111122235678899999 8887443 4456666432 224446778888888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHh---hcCC---ChHHHHHHhccCC---CCCcccHHHHHHHHHcCCCchHHHHHHHHHHH
Q 044131 132 GHAIVSGYGSDLFVGAALVDLY---FKFS---WVKSARKVFDKMP---EKDTVLWNSMISGLMKNCCFQDSIWVFGDMVR 202 (784)
Q Consensus 132 ~~~~~~g~~~d~~~~~~li~~y---~~~g---~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 202 (784)
.++++.. | ...++++..+ .... .+..+..++...- ..|++.-|.|..-|.-.|++..++.+...+..
T Consensus 223 ~ralqLd--p--~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~ 298 (1018)
T KOG2002|consen 223 ERALQLD--P--TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIK 298 (1018)
T ss_pred HHHHhcC--h--hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHH
Confidence 8887764 3 2223333322 1222 2444444444332 24788889999999999999999999998876
Q ss_pred cCCCC-CChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC-eee
Q 044131 203 NGGTW-LDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR--PD-LIS 278 (784)
Q Consensus 203 ~~g~~-pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~d-~~~ 278 (784)
..-.. .-..+|-.+-+++-..|+++.|...+-...+..-..-+..+-.|..+|.+.|+++.|...|+.+.. || ..+
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~et 378 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYET 378 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHH
Confidence 51111 112357788889999999999999998887754333344456788999999999999999998854 33 334
Q ss_pred HHHHHHHHHhCC----CchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHH----HHHHhCCCcchHHHH
Q 044131 279 CNAMISGYTCNG----KTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHS----FCLKSGIVSNSSVLT 350 (784)
Q Consensus 279 ~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~----~~~~~g~~~~~~~~~ 350 (784)
.-.+-..|+..+ ..+.|..++.+..+.- +-|...|..+-..+-.... ......+. .+...+..+.+.+.|
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~-~~sL~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDP-WASLDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 444445555554 4466666666555432 3445566655555544332 22244444 344566678889999
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC-------Ch------hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHH-HH
Q 044131 351 ALSTVYSRLNEMEAARKLFDESSEK-------SL------ASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVT-VS 416 (784)
Q Consensus 351 ~Li~~y~~~g~~~~A~~~f~~~~~~-------~~------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~ 416 (784)
.+...+...|+++.|...|+..... |. .+-..+...+-..++++.|.+.|...... .|+-++ |.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~yl 534 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYL 534 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHH
Confidence 9999999999999999999865432 22 12233445566678999999999999875 565443 22
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC-----CCCHHHHHHHHHHHH--
Q 044131 417 SILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS-----HKSEVTWNTMISGYG-- 489 (784)
Q Consensus 417 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~-- 489 (784)
.++......+...+|...+..+.... ..++.+.+-+.+.|.+...+.-|.+-|..+. .+|..+.-+|...|.
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 23222223467778888888877654 5567777777888999888888888665554 235555555555443
Q ss_pred ----------HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHH
Q 044131 490 ----------LHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDIL 559 (784)
Q Consensus 490 ----------~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l 559 (784)
..+..++|+++|.+.+... +-|...-+.+.-.+++.|++.+|..+|.+..+.. .-...+|-.+...|
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~ 690 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCY 690 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHH
Confidence 2345778999999988853 4466777788888999999999999999998642 23456788899999
Q ss_pred HhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHH----------
Q 044131 560 GRAGQLEKALEFIKGLA----VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIY---------- 625 (784)
Q Consensus 560 ~r~g~~~eA~~~~~~m~----~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y---------- 625 (784)
...|++-.|+++|+..- -+.++.+...|..++...|.+.+|...+..+..+.|.++..-..++-+.
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~ 770 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRL 770 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhc
Confidence 99999999999998651 2446778999999999999999999999999999999998777666543
Q ss_pred ---------HhcCChHHHHHHHHHHHhCCC
Q 044131 626 ---------SAERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 626 ---------~~~g~~~~a~~~~~~m~~~~~ 646 (784)
...+..++|.++|..|...+-
T Consensus 771 ~k~t~eev~~a~~~le~a~r~F~~ls~~~d 800 (1018)
T KOG2002|consen 771 EKRTLEEVLEAVKELEEARRLFTELSKNGD 800 (1018)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344556778888888876543
No 22
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.76 E-value=2e-14 Score=168.53 Aligned_cols=394 Identities=12% Similarity=0.056 Sum_probs=262.5
Q ss_pred HHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 044131 181 ISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGE 260 (784)
Q Consensus 181 i~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~ 260 (784)
+......|+.++|++++.+.... -..+...+..+..++...|++++|.+++..+++.. +.+......+..++...|+
T Consensus 22 ~~ia~~~g~~~~A~~~~~~~~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~ 98 (765)
T PRK10049 22 LQIALWAGQDAEVITVYNRYRVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC
Confidence 44455677777777777776531 12233345666666666666666666666666542 2234445556666666666
Q ss_pred hHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHH
Q 044131 261 VERAELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFC 337 (784)
Q Consensus 261 ~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~ 337 (784)
.++|...+++... .+.. |..+...+...|+.++|+..+++..+.
T Consensus 99 ~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~-------------------------------- 145 (765)
T PRK10049 99 YDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPR-------------------------------- 145 (765)
T ss_pred HHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------------------------------
Confidence 6666666665532 2223 555555566666666666666666543
Q ss_pred HHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh--------HHHHHHHHHH-----hCCCh---hHHHHHHH
Q 044131 338 LKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLA--------SWNAMIAGYT-----QNGLT---EEAISLFQ 401 (784)
Q Consensus 338 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~--------~~~~li~~~~-----~~g~~---~~A~~l~~ 401 (784)
. +.+..+...+...+...|..+.|.+.++.... ++. ....++..+. ..+++ ++|++.++
T Consensus 146 ---~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 146 ---A-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred ---C-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 2 23444555566677777888888888877665 211 1122222221 22233 77888888
Q ss_pred HHHhC-CCCCCHH-HHH----HHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC
Q 044131 402 EMQAS-KVAPNPV-TVS----SILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH 475 (784)
Q Consensus 402 ~m~~~-g~~pd~~-t~~----~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~ 475 (784)
.+... ...|+.. .+. ..+.++...++.++|+..++.+.+.+-+........+...|...|++++|+..|+++..
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~ 300 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFY 300 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhh
Confidence 88754 2233321 111 11345567789999999999998875221112223357789999999999999998753
Q ss_pred CC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHccCCHHHHHH
Q 044131 476 KS-------EVTWNTMISGYGLHGHGLEALQLFSEMLHSG-----------IRPSG---VTFLSVLYACSHAGLVREGDE 534 (784)
Q Consensus 476 ~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~pd~---~t~~~ll~a~~~~g~~~~a~~ 534 (784)
.+ ...+..+..++.+.|++++|+++++++.+.. -.||. ..+..+...+...|+.++|++
T Consensus 301 ~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~ 380 (765)
T PRK10049 301 HPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEM 380 (765)
T ss_pred cCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHH
Confidence 22 3456667778899999999999999998752 12342 234566678889999999999
Q ss_pred HHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 044131 535 IFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 535 ~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~ 611 (784)
.++++... .|+ ...+..+..++...|++++|++.+++. ...|+ ...+..+.......|++++|+..++++++..
T Consensus 381 ~l~~al~~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 381 RARELAYN---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHh---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999754 454 778889999999999999999999987 46676 5577788888889999999999999999999
Q ss_pred CCCcchH
Q 044131 612 PENVGYH 618 (784)
Q Consensus 612 p~~~~~~ 618 (784)
|+++.+.
T Consensus 458 Pd~~~~~ 464 (765)
T PRK10049 458 PQDPGVQ 464 (765)
T ss_pred CCCHHHH
Confidence 9998554
No 23
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.75 E-value=2.7e-14 Score=164.30 Aligned_cols=270 Identities=11% Similarity=0.018 Sum_probs=208.4
Q ss_pred cCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhCchHHH
Q 044131 359 LNEMEAARKLFDESSEK------SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN-PVTVSSILSACAQLGAISLG 431 (784)
Q Consensus 359 ~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a 431 (784)
.+++++|.+.|+...+. +...|+.+...+...|++++|+..|++.... .|+ ...+..+...+...|++++|
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA 384 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKA 384 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHH
Confidence 46788888888876532 3457888888888999999999999998764 454 45777777888889999999
Q ss_pred HHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 044131 432 KWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSG 508 (784)
Q Consensus 432 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 508 (784)
...+..+++.. +.+..++..+...|...|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.
T Consensus 385 ~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~- 462 (615)
T TIGR00990 385 EEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN- 462 (615)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 99999888764 55678888899999999999999999998763 35678888889999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCc-ch-------HHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 044131 509 IRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLA-EH-------YACMVDILGRAGQLEKALEFIKGL-AVEP 579 (784)
Q Consensus 509 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~-------~~~lv~~l~r~g~~~eA~~~~~~m-~~~p 579 (784)
.+.+...+..+..++...|++++|.+.|+...+ +.|+. .. ++.....+...|++++|.+++++. ...|
T Consensus 463 ~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~---l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p 539 (615)
T TIGR00990 463 FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE---LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDP 539 (615)
T ss_pred CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh---cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 233467788888899999999999999998873 34431 11 122223344579999999999885 4566
Q ss_pred CH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 580 GP-AVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 580 ~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+. ..+..+...+...|++++|...+++++++.+.....+ .+..|.++.++....++
T Consensus 540 ~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~--------~a~~~~~a~~~~~~~~~ 596 (615)
T TIGR00990 540 ECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELV--------QAISYAEATRTQIQVQE 596 (615)
T ss_pred CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHH--------HHHHHHHHHHHHHHHHH
Confidence 54 4788999999999999999999999999887644322 23346667776655554
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=1.4e-14 Score=166.12 Aligned_cols=325 Identities=12% Similarity=0.007 Sum_probs=265.1
Q ss_pred hhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHH
Q 044131 311 SSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGY 387 (784)
Q Consensus 311 ~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~ 387 (784)
..-...++..+...|+.+.|..++...+.....+ ......++......|++++|...|+++.. .+...|..+...+
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 3445567778889999999999999998876444 44445555666779999999999998764 3566888899999
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHH
Q 044131 388 TQNGLTEEAISLFQEMQASKVAPN-PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEA 466 (784)
Q Consensus 388 ~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 466 (784)
.+.|++++|+..|++.... .|+ ...+..+...+...|+.++|...+..+....- .+...+..+. .+.+.|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~~-~l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATCL-SFLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHHH-HHHHcCCHHHH
Confidence 9999999999999999874 454 56777788889999999999999998876642 2333443333 47889999999
Q ss_pred HHHHhhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH----HHHHHHH
Q 044131 467 RELFDLMSHK----SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVRE----GDEIFQS 538 (784)
Q Consensus 467 ~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~----a~~~~~~ 538 (784)
...++.+.+. +...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|+.++ |...|+.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~ 275 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH 275 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence 9999987542 33445556778899999999999999999853 3345677788889999999986 8999998
Q ss_pred hHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 539 MIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 539 m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
..+ +.|+ ...+..+..+|.+.|++++|...+++. ...|+ ..++..+..++...|++++|...++++++.+|+++
T Consensus 276 Al~---l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~ 352 (656)
T PRK15174 276 ALQ---FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS 352 (656)
T ss_pred HHh---hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence 874 4566 678889999999999999999999886 35564 55788888999999999999999999999999988
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 616 GYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 616 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
..+..++.+|...|++++|.+.++...+.
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 87888899999999999999999877554
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.72 E-value=1.9e-13 Score=157.00 Aligned_cols=437 Identities=8% Similarity=0.024 Sum_probs=263.5
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccHHHHH---HHHHcCCCchHHHH
Q 044131 119 SACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMI---SGLMKNCCFQDSIW 195 (784)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~ 195 (784)
.+.|+...|...+.++++........++ .++..+...|+.++|+..+++...|+...+..+. ..|...|++++|++
T Consensus 45 ~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aie 123 (822)
T PRK14574 45 ARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALA 123 (822)
T ss_pred HhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 3666667777777776665422222333 6666777777777777777777665443333332 35556677777777
Q ss_pred HHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCC
Q 044131 196 VFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPD 275 (784)
Q Consensus 196 l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d 275 (784)
+|+++.+. .| .++.++..++..|...++.++|.+.++++...+
T Consensus 124 ly~kaL~~---dP----------------------------------~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d 166 (822)
T PRK14574 124 LWQSSLKK---DP----------------------------------TNPDLISGMIMTQADAGRGGVVLKQATELAERD 166 (822)
T ss_pred HHHHHHhh---CC----------------------------------CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence 77777654 22 234555566777888888888888888886644
Q ss_pred eeeHHHHHHHHHh--CCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHH
Q 044131 276 LISCNAMISGYTC--NGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALS 353 (784)
Q Consensus 276 ~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 353 (784)
......+..+|.. .++..+|++.++++.+.. +-+...+.....+..+.|-...|.++...- |+.+.-.-..
T Consensus 167 p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~------p~~f~~~~~~ 239 (822)
T PRK14574 167 PTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKEN------PNLVSAEHYR 239 (822)
T ss_pred cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhC------ccccCHHHHH
Confidence 4433334444444 455556888888888763 222333344444444444444444333221 1111000000
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCC---hhHHHHHHHHHHhC-CCCCCH-H----HHHHHHHHHhh
Q 044131 354 TVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGL---TEEAISLFQEMQAS-KVAPNP-V----TVSSILSACAQ 424 (784)
Q Consensus 354 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~-g~~pd~-~----t~~~ll~a~~~ 424 (784)
.. +.+.|.+..+.-..+ .-...++ .+.|+.-++.+... +-.|.. . ...--+-++..
T Consensus 240 ~l-----~~~~~a~~vr~a~~~----------~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~ 304 (822)
T PRK14574 240 QL-----ERDAAAEQVRMAVLP----------TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV 304 (822)
T ss_pred HH-----HHHHHHHHHhhcccc----------cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH
Confidence 00 001111111000000 0000111 24455555555431 112321 1 11233456677
Q ss_pred hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCC---------CHHHHHHHHHHHHHcCCHH
Q 044131 425 LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHK---------SEVTWNTMISGYGLHGHGL 495 (784)
Q Consensus 425 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---------~~~~~~~li~~~~~~g~~~ 495 (784)
.++...+...++.+...+.+....+--++.++|...+++++|..+|..+... +......|.-+|...++++
T Consensus 305 r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~ 384 (822)
T PRK14574 305 RHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLD 384 (822)
T ss_pred hhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHH
Confidence 7888888888888887776666677788888888888888888888876421 2333567788888888888
Q ss_pred HHHHHHHHHHHCC-------------CCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHH
Q 044131 496 EALQLFSEMLHSG-------------IRPSGVT-FLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILG 560 (784)
Q Consensus 496 ~A~~~~~~m~~~g-------------~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~ 560 (784)
+|..+++++.+.- ..||-.. +..+...+...|++.+|++.++.+... .| |......+.+++.
T Consensus 385 ~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~---aP~n~~l~~~~A~v~~ 461 (822)
T PRK14574 385 KAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST---APANQNLRIALASIYL 461 (822)
T ss_pred HHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHH
Confidence 8888888888731 1122233 334455677888888888888888643 44 4777888888888
Q ss_pred hcCCHHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 561 RAGQLEKALEFIKGLA-VEPGP-AVWGALLGACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 561 r~g~~~eA~~~~~~m~-~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
..|+..+|++.++... ..|+. .+...+..+....+++++|+.+.+.+.+..|++++.-
T Consensus 462 ~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 462 ARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 8888888888887653 56654 3666677777778888888888888888888887543
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=3.8e-13 Score=147.53 Aligned_cols=542 Identities=11% Similarity=0.080 Sum_probs=387.2
Q ss_pred chhHHHHHHHHHhhCCCCCCcccHHHHHHHHh--cCCCchHHHHHHHHHHHhC--CCCchhHHHHHHHHhhcCCChHHHH
Q 044131 88 PKSSICFYTHLRKNTALTPDNFTYSFVLSAAS--ACCDRSIGVLLHGHAIVSG--YGSDLFVGAALVDLYFKFSWVKSAR 163 (784)
Q Consensus 88 ~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~g--~~~d~~~~~~li~~y~~~g~~~~A~ 163 (784)
.+.|.. .|....+. .|+.. ...+.+||. ..+++..+..+|..++... ..||+.+... ..+.++|+.+.|+
T Consensus 146 ~~~A~a-~F~~Vl~~--sp~Ni-l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig--~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADA-QFHFVLKQ--SPDNI-LALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIG--HCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHH-HHHHHHhh--CCcch-HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhh--hHHHhccchhhHH
Confidence 478888 77776653 24332 334557776 5669999999999977654 4667655433 4567999999999
Q ss_pred HHhccCCCCCcccHHHHHHHH-H-----cCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHH
Q 044131 164 KVFDKMPEKDTVLWNSMISGL-M-----KNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGL 237 (784)
Q Consensus 164 ~~f~~~~~~~~~~~~~li~~~-~-----~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~ 237 (784)
..|.+..+-|+..-++++.-. . ....+..++.++...-.. -.-|++..+.|-+-+...++.+.+..+...++
T Consensus 220 ~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 220 LAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 999999877665555555422 1 223455677777666543 23456677788888889999999999999888
Q ss_pred HhCCCCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CC--eeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCh
Q 044131 238 KLGFHDH--VYVLTGLVSFYSKCGEVERAELLFRDIVR--PD--LISCNAMISGYTCNGKTESSLRLFRQLLASAERVNS 311 (784)
Q Consensus 238 ~~g~~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~d--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 311 (784)
+...... ...|--+..+|-..|+++.|...|.+... +| +..+--+...|...|+.+.+...|+..... .+-+.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~ 376 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNY 376 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchH
Confidence 7653222 23466688999999999999999977644 33 344556788999999999999999999875 33445
Q ss_pred hhHHhHHHhhcCCC----ChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCC------HHHHHHHHhh-cCCCChhHH
Q 044131 312 STIVGLIPVFYPFG----HLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNE------MEAARKLFDE-SSEKSLASW 380 (784)
Q Consensus 312 ~t~~~ll~~~~~~~----~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~------~~~A~~~f~~-~~~~~~~~~ 380 (784)
.|...+-..|+..+ ..+.|..+.+...+.- +.|...|-.+..+|....- +..|..++.. +....+...
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~L 455 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVL 455 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 56666666666554 4566666666666554 5577777777777765433 3334433333 233466788
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhC---CCCCCH-----H-HHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHh
Q 044131 381 NAMIAGYTQNGLTEEAISLFQEMQAS---KVAPNP-----V-TVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVST 451 (784)
Q Consensus 381 ~~li~~~~~~g~~~~A~~l~~~m~~~---g~~pd~-----~-t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 451 (784)
|.+.+.+...|.+++|...|.+.... ...+|. . +--.+-...-..++.+.|.+.+..+.+.. +.-+..|-
T Consensus 456 NNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~yl 534 (1018)
T KOG2002|consen 456 NNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYL 534 (1018)
T ss_pred HhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHH
Confidence 99999999999999999999998764 223333 2 22234444556779999999999998763 22222233
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHc--
Q 044131 452 ALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHS-GIRPSGVTFLSVLYACSH-- 525 (784)
Q Consensus 452 ~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~a~~~-- 525 (784)
-|.-|--..+...+|...+.... +.|+..|+-+...|.....+..|.+-|+...+. -..+|..+..+|.+.|..
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 33323333367778888888776 467788888888899998999999888777653 234788888888776653
Q ss_pred ----------cCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044131 526 ----------AGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACM 592 (784)
Q Consensus 526 ----------~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~ 592 (784)
.+..++|+++|.+.++ ..| +...-+-+.-.|+..|++.+|.++|.+.. ...+..+|-.|...|.
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~---~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLR---NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHh---cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 3456778888887774 334 46667778889999999999999998873 2335568999999999
Q ss_pred hcCCHHHHHHHHHHHhcC--CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 593 IHKDTNLARVASEKLFEL--DPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l--~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..|++..|.+.|+..++. ..+++.....|+.++...|+|.+|.+.......
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999999999999873 346677888999999999999999998766544
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.71 E-value=1.9e-13 Score=157.03 Aligned_cols=431 Identities=12% Similarity=0.022 Sum_probs=255.9
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCChh-hHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChH
Q 044131 184 LMKNCCFQDSIWVFGDMVRNGGTWLDST-SVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVE 262 (784)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~~g~~pd~~-t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~ 262 (784)
..+.|+++.|++.|++..+. .|+.. ....++..+...|+.++|...++..+. .-........++...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~-p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA---GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQS-SMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh---CccchhhHHHHHHHHHHcCCcHHHHHHHHHhcc-CCCCCHHHHHHHHHHHHHcCCHH
Confidence 56788888888888887743 44431 122555555555666666666655551 00111222222344555556666
Q ss_pred HHHHHHhcCCCC---CeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHH
Q 044131 263 RAELLFRDIVRP---DLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLK 339 (784)
Q Consensus 263 ~A~~~f~~~~~~---d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 339 (784)
+|.++|+++.+. |...+..++..|.+.++.++|++.++++... .|+...+..++..+...++...+.+.++.+++
T Consensus 120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 666666655331 2233444455555566666666666655443 23333332222222222333234444444444
Q ss_pred hCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 044131 340 SGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEK-SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSI 418 (784)
Q Consensus 340 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 418 (784)
.. +.+...+..++....+.|-...|.++..+-+.- +...+.-+ +.+.|.+ +.+.+..|+.
T Consensus 198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l--------~~~~~a~----~vr~a~~~~~------ 258 (822)
T PRK14574 198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQL--------ERDAAAE----QVRMAVLPTR------ 258 (822)
T ss_pred hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHH--------HHHHHHH----HHhhcccccc------
Confidence 42 333344444444444444444444443332211 00000000 0001111 1111111100
Q ss_pred HHHHhhhC---chHHHHHHHHHHHHc-C-CCCchh-hHhHHHH---HHHhcCCHHHHHHHHhhcCCCC----HHHHHHHH
Q 044131 419 LSACAQLG---AISLGKWVHELVKSR-N-FESNIY-VSTALID---MYAKCGNIVEARELFDLMSHKS----EVTWNTMI 485 (784)
Q Consensus 419 l~a~~~~~---~~~~a~~i~~~~~~~-g-~~~~~~-~~~~Li~---~y~k~g~~~~A~~~f~~~~~~~----~~~~~~li 485 (784)
.... -.+.+..-++.+... + .++... ...+.+| ++.+.|++.++++.|+.+.... ..+--++.
T Consensus 259 ----~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a 334 (822)
T PRK14574 259 ----SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA 334 (822)
T ss_pred ----cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence 0011 233344444444431 1 122212 2334444 5678899999999999998422 23556788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC----------CCCC--
Q 044131 486 SGYGLHGHGLEALQLFSEMLHSG-----IRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHG----------FKPL-- 548 (784)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g-----~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~----------~~p~-- 548 (784)
.+|...+++++|+.+|++..... ..++......|..|+..++++++|..+++.+.+.-. -.|+
T Consensus 335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d 414 (822)
T PRK14574 335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD 414 (822)
T ss_pred HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence 99999999999999999997643 122334467899999999999999999999975211 0122
Q ss_pred -cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 044131 549 -AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIY 625 (784)
Q Consensus 549 -~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 625 (784)
.+.+..++..+...|++.+|++.++++. ..| |..++..+...++..|+...|+..++.+..++|++......++..+
T Consensus 415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a 494 (822)
T PRK14574 415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA 494 (822)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence 3445567888999999999999999983 444 7779999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHh
Q 044131 626 SAERDYLQAATVRQVVKK 643 (784)
Q Consensus 626 ~~~g~~~~a~~~~~~m~~ 643 (784)
...|+|++|.++.+...+
T Consensus 495 l~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 495 MALQEWHQMELLTDDVIS 512 (822)
T ss_pred HhhhhHHHHHHHHHHHHh
Confidence 999999999998877655
No 28
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1e-12 Score=131.31 Aligned_cols=326 Identities=12% Similarity=0.096 Sum_probs=207.0
Q ss_pred cchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHh--cCCCchHH-HHHHHHHHHhCCCCchhHHHH
Q 044131 72 LFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAAS--ACCDRSIG-VLLHGHAIVSGYGSDLFVGAA 148 (784)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~d~~~~~~ 148 (784)
+++=|.|+. ...+|...++.- +++.|+..|++.+...=..++.... ...++.-+ .+.|-.|.+.|-.. ..+
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~i-lY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S-~~s--- 189 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCI-LYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDS-TSS--- 189 (625)
T ss_pred hcchhHHHH-HHhhcccchhHH-HHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccc-ccc---
Confidence 445555554 345677888887 9999999988777665555554322 22233222 12233333333221 111
Q ss_pred HHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhH
Q 044131 149 LVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRL 228 (784)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~ 228 (784)
-|.|++.+ -+|+..| +...++..||.|.++--..+.|.++|++-... ..+.+..+|+.++.+-+- ..
T Consensus 190 -----WK~G~vAd--L~~E~~P-KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~-k~kv~~~aFN~lI~~~S~----~~ 256 (625)
T KOG4422|consen 190 -----WKSGAVAD--LLFETLP-KTDETVSIMIAGLCKFSSLERARELYKEHRAA-KGKVYREAFNGLIGASSY----SV 256 (625)
T ss_pred -----cccccHHH--HHHhhcC-CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh-hheeeHHhhhhhhhHHHh----hc
Confidence 24565544 4455444 56678999999999999999999999999988 889999999999988653 34
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCC
Q 044131 229 GMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAER 308 (784)
Q Consensus 229 a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 308 (784)
++.+...|+...+.||.+++|+++...++.|.++.|++.+ ++++.+|++.|+.
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aa---------------------------lqil~EmKeiGVe 309 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAA---------------------------LQILGEMKEIGVE 309 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHH---------------------------HHHHHHHHHhCCC
Confidence 5889999999999999999999999999999999887654 4444455555555
Q ss_pred CChhhHHhHHHhhcCCCChhH-HHHHHHHHHHh--C--C----CcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC----
Q 044131 309 VNSSTIVGLIPVFYPFGHLHL-TNCIHSFCLKS--G--I----VSNSSVLTALSTVYSRLNEMEAARKLFDESSEK---- 375 (784)
Q Consensus 309 p~~~t~~~ll~~~~~~~~~~~-a~~i~~~~~~~--g--~----~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---- 375 (784)
|...+|.-+|..+.+.++... +..+...+... | + +.|...+..-++.+.+..+.+-|.++-.-....
T Consensus 310 PsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~ 389 (625)
T KOG4422|consen 310 PSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK 389 (625)
T ss_pred cchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh
Confidence 555555555554444444322 22222222211 1 1 112233333344444444444444443322211
Q ss_pred -------ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCC
Q 044131 376 -------SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNF 443 (784)
Q Consensus 376 -------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~ 443 (784)
...-|..+....++....+.-+..|..|.-.-+-|+..+...+++|....+.++....++..++..|.
T Consensus 390 ~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh 464 (625)
T KOG4422|consen 390 FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH 464 (625)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh
Confidence 11234455666677777788888888888777778888888888888888888888888777776653
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.63 E-value=6.3e-11 Score=129.65 Aligned_cols=583 Identities=13% Similarity=0.035 Sum_probs=330.9
Q ss_pred HhhCCCChhHHHHHhccCC---CCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchH
Q 044131 50 RLSDFKATCYARALFFSIP---KPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSI 126 (784)
Q Consensus 50 ~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~ 126 (784)
.|++ |++++|.+++.++- ..+...|.+|-..|-+.|+.++++. .+- ....-.+-|...|..+-.-..+.|.+..
T Consensus 149 lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~-~~l-lAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 149 LFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALN-FWL-LAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHH-HHH-HHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 3454 99999999998863 3567789999999999999999987 322 2222233455677777777778889999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCc-ccH-------HHHHHHHHcCCCchHHHHHHH
Q 044131 127 GVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDT-VLW-------NSMISGLMKNCCFQDSIWVFG 198 (784)
Q Consensus 127 a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~-~~~-------~~li~~~~~~g~~~~A~~l~~ 198 (784)
|.-.+.++++.. +++....---+.+|-+.|+...|..-|.++-+.+. +.| -.++..|...+..+.|++.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999886 44444444556788899999988887777654322 111 123445556666677777777
Q ss_pred HHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHh---------------------------CCCCchhH-HHH
Q 044131 199 DMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKL---------------------------GFHDHVYV-LTG 250 (784)
Q Consensus 199 ~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~---------------------------g~~~~~~~-~~~ 250 (784)
.....++-..+..+++.+...+.+....+.+.......... ++.++..+ ...
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 66553233344445555555555555555544433333221 11222222 111
Q ss_pred HHHHHHhcCChHHHHHHHhcC----CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCC
Q 044131 251 LVSFYSKCGEVERAELLFRDI----VRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGH 326 (784)
Q Consensus 251 li~~y~~~g~~~~A~~~f~~~----~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 326 (784)
+--.-.+.+...++..-|-.. +.-++..|.-+..+|.+.|++.+|+.+|..+.....--+...|-.+...+-..+.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 111112233333443333211 2234445667777788888888888888877766555556677777777777788
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh-----HH-------HHHHHHHHhCCChh
Q 044131 327 LHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLA-----SW-------NAMIAGYTQNGLTE 394 (784)
Q Consensus 327 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~-----~~-------~~li~~~~~~g~~~ 394 (784)
.+.|.+.+..++... +.+..+--.|...|.+.|+.|+|.+.+..+..+|.. .| -.....|.+.|+.+
T Consensus 465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 888888887777654 445566667777788888888888888876655421 11 12234456666666
Q ss_pred HHHHHHHHHHhCC----------------------CCCCHHHHHHHHHHHhhhCchH---HHHHH---HHHHHHcCCCCc
Q 044131 395 EAISLFQEMQASK----------------------VAPNPVTVSSILSACAQLGAIS---LGKWV---HELVKSRNFESN 446 (784)
Q Consensus 395 ~A~~l~~~m~~~g----------------------~~pd~~t~~~ll~a~~~~~~~~---~a~~i---~~~~~~~g~~~~ 446 (784)
+=+..-.+|.... .+-...+...+..+-.+.++.. .+..- .......++..+
T Consensus 544 ~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsid 623 (895)
T KOG2076|consen 544 EFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSID 623 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHH
Confidence 5444444443211 1111112222222222222211 11111 111112222222
Q ss_pred h--hhHhHHHHHHHhcCCHHHHHHHHhhcCCC-----CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C--CCCC
Q 044131 447 I--YVSTALIDMYAKCGNIVEARELFDLMSHK-----SE----VTWNTMISGYGLHGHGLEALQLFSEMLHS-G--IRPS 512 (784)
Q Consensus 447 ~--~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-----~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--~~pd 512 (784)
. ..+.-++...+|.|+.++|..+...+..- +. ..-..++.+....+++.+|.+.++.|... + ..|.
T Consensus 624 dwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~ 703 (895)
T KOG2076|consen 624 DWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY 703 (895)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence 1 34455666777777777777766655421 11 12234455556667777777777766653 1 1222
Q ss_pred HHH-HHHHHHHHH-----------------------------------ccCCHHHHHHHHHHhHHhcCCCCCcchHH-HH
Q 044131 513 GVT-FLSVLYACS-----------------------------------HAGLVREGDEIFQSMIHDHGFKPLAEHYA-CM 555 (784)
Q Consensus 513 ~~t-~~~ll~a~~-----------------------------------~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~l 555 (784)
..+ |+..++..+ ..+.+.-|+.++-... ...|+.-.++ ||
T Consensus 704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~---~~~pd~Pl~nl~l 780 (895)
T KOG2076|consen 704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAF---RQNPDSPLINLCL 780 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHH---HhCCCCcHHHHHH
Confidence 211 221222222 1455566666555443 3345533332 22
Q ss_pred HHHHH----------hcCCHHHHHHHHHhCC-C-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc------
Q 044131 556 VDILG----------RAGQLEKALEFIKGLA-V-EP--GPAVWGALLGACMIHKDTNLARVASEKLFELDPENV------ 615 (784)
Q Consensus 556 v~~l~----------r~g~~~eA~~~~~~m~-~-~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~------ 615 (784)
.-++. |.-.+-.+..++++.. . .+ ...++-.+..||..-|=+..|+..|++++++.|.+.
T Consensus 781 glafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d 860 (895)
T KOG2076|consen 781 GLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKED 860 (895)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCC
Confidence 22221 2222334455554331 1 22 345777888999999999999999999999876432
Q ss_pred ------chHHHHHHHHHhcCChHHHHHHHHH
Q 044131 616 ------GYHVLLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 616 ------~~~~~l~~~y~~~g~~~~a~~~~~~ 640 (784)
.+-.+|.-||...|+.+-|.++.+.
T Consensus 861 ~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 861 NYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred cccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 2344677899999999998887653
No 30
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.62 E-value=1.6e-12 Score=129.87 Aligned_cols=254 Identities=15% Similarity=0.110 Sum_probs=166.2
Q ss_pred CcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHH
Q 044131 71 DLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALV 150 (784)
Q Consensus 71 ~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li 150 (784)
...++..||+|+++--..+.|.+ ++++-.....+.+..+||.+|.+.+ +..++.+...|+...+.||.+++|+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~-L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMisqkm~Pnl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARE-LYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMISQKMTPNLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHH-HHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHHHhhcCCchHhHHHHH
Confidence 34578888898888888888888 8888887778888888888887654 344578888888888889999999998
Q ss_pred HHhhcCCChHHHHHHh----ccCC----CCCcccHHHHHHHHHcCCCchH-HHHHHHHHHHc-C--CCCC----ChhhHH
Q 044131 151 DLYFKFSWVKSARKVF----DKMP----EKDTVLWNSMISGLMKNCCFQD-SIWVFGDMVRN-G--GTWL----DSTSVA 214 (784)
Q Consensus 151 ~~y~~~g~~~~A~~~f----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~-~--g~~p----d~~t~~ 214 (784)
...++.|.++.|++.+ .+|. +|...+|..+|.-+.+.+++.+ |..+..++... . .++| |..-|.
T Consensus 281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~ 360 (625)
T KOG4422|consen 281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ 360 (625)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence 8888888887776654 3333 4677777777777777777644 33333333221 0 1222 334566
Q ss_pred hHHHHHhcccchhHHHHHHHHHHHhC----CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCC
Q 044131 215 AVLPAVAEVQELRLGMEIQCLGLKLG----FHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNG 290 (784)
Q Consensus 215 ~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g 290 (784)
+.+..|.+..+.+.|.++++...... +.|+. ....-|..+....++..
T Consensus 361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~----------------------------~~~fYyr~~~~licq~e 412 (625)
T KOG4422|consen 361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQ----------------------------HRNFYYRKFFDLICQME 412 (625)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHH----------------------------HHHHHHHHHHHHHHHHH
Confidence 77777777777777777776653311 11110 01112334455556666
Q ss_pred CchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Q 044131 291 KTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYS 357 (784)
Q Consensus 291 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 357 (784)
..+.-+.+|+.|.-.-+-|+..+...++++....+.++....++..++..|...+..+..-++...+
T Consensus 413 s~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~ 479 (625)
T KOG4422|consen 413 SIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA 479 (625)
T ss_pred HHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence 6666667777776666667777777777777777777777777777766665444444443333333
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.59 E-value=2.2e-10 Score=125.59 Aligned_cols=341 Identities=14% Similarity=0.141 Sum_probs=179.0
Q ss_pred CCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccC---CCCCcccHHHHHHHHHcCCCchHHHHHHH
Q 044131 122 CDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKM---PEKDTVLWNSMISGLMKNCCFQDSIWVFG 198 (784)
Q Consensus 122 ~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 198 (784)
|+++.|..++..+++.. +.....|-.|-..|-..|+.+++...+-.. ...|..-|-.+-.-..+.|++++|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 66666666666666654 334445556666666666666665544322 22344556666666666666666666666
Q ss_pred HHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHH----HHHHHHhcCChHHHHHHHhcCCC-
Q 044131 199 DMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTG----LVSFYSKCGEVERAELLFRDIVR- 273 (784)
Q Consensus 199 ~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~y~~~g~~~~A~~~f~~~~~- 273 (784)
+..+. -+++...+--=...|-+.|+...|..-+.++.....+.|..-.-. .+..|...++-+.|.+.++..+.
T Consensus 232 rAI~~--~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 232 RAIQA--NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHhc--CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 65542 222222222333445555666666666666555433222222222 23344455555666666655533
Q ss_pred ----CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhH----------------------H----hHHHhhcC
Q 044131 274 ----PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTI----------------------V----GLIPVFYP 323 (784)
Q Consensus 274 ----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~----------------------~----~ll~~~~~ 323 (784)
-+...+|.++..|.+...++.|+.....+......+|..-+ . -+.-+...
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 23334666677777777777777766666552222221111 1 11112233
Q ss_pred CCChhHHHHHHHHHHHhC--CCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHhCCChhHHH
Q 044131 324 FGHLHLTNCIHSFCLKSG--IVSNSSVLTALSTVYSRLNEMEAARKLFDESSEK----SLASWNAMIAGYTQNGLTEEAI 397 (784)
Q Consensus 324 ~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~ 397 (784)
....+....+.....+.. ...+...+.-+.++|...|.+.+|.++|..+... +...|--+..+|...|.+++|.
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 444444455555555554 2334455666666666666666666666665432 4456666666666666666666
Q ss_pred HHHHHHHhCCCCCCH-HHHHHHHHHHhhhCchHHHHHHHHHHH--------HcCCCCchhhHhHHHHHHHhcCCHHHHH
Q 044131 398 SLFQEMQASKVAPNP-VTVSSILSACAQLGAISLGKWVHELVK--------SRNFESNIYVSTALIDMYAKCGNIVEAR 467 (784)
Q Consensus 398 ~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 467 (784)
+.|...+.. .|+. -.-.++-..+-++|+.++|.+.+..+. ..+..|+..+.--..++|.+.|+.++=.
T Consensus 470 e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 470 EFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 666666543 3332 222333344556666666666666532 2234445555555556666666665533
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.59 E-value=2.5e-10 Score=120.22 Aligned_cols=458 Identities=13% Similarity=0.051 Sum_probs=306.6
Q ss_pred cCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHH----HhCCCCchhHHHHHHHHHHhcCCh
Q 044131 186 KNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGL----KLGFHDHVYVLTGLVSFYSKCGEV 261 (784)
Q Consensus 186 ~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~----~~g~~~~~~~~~~li~~y~~~g~~ 261 (784)
+..-++.|..++...++ .++-|...|.+..+.=-..|+.+....+....+ ..|+..+..-|-.=...+-+.|..
T Consensus 418 rLetYenAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv 495 (913)
T KOG0495|consen 418 RLETYENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSV 495 (913)
T ss_pred HHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCCh
Confidence 33344444444444443 244444444444444444444444444433322 234444444443333444444444
Q ss_pred HHHHHHHhcCCC------CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHH
Q 044131 262 ERAELLFRDIVR------PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHS 335 (784)
Q Consensus 262 ~~A~~~f~~~~~------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 335 (784)
-.+..+...... .--.+|+.-...|.+.+.++-|..+|...++. .+-+...|..+...--..|..+.-..++.
T Consensus 496 ~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allq 574 (913)
T KOG0495|consen 496 ITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQ 574 (913)
T ss_pred hhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 444333333211 11234555555555555555555555544432 12222333333333333344444444444
Q ss_pred HHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH
Q 044131 336 FCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNP 412 (784)
Q Consensus 336 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~ 412 (784)
.++..- +.....|-....-+-..|++..|+.+++..-+ .+...|-+-+..-..+.++++|..+|.+... ..|+.
T Consensus 575 kav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~--~sgTe 651 (913)
T KOG0495|consen 575 KAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARS--ISGTE 651 (913)
T ss_pred HHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcc
Confidence 444432 33445555566666777888888888776543 3556788888888889999999999988876 45666
Q ss_pred HHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHHHHHHHH
Q 044131 413 VTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--K-SEVTWNTMISGYG 489 (784)
Q Consensus 413 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~li~~~~ 489 (784)
..|.--...---++..++|+++++..++. ++.-...|-.+...|-..++++.|+..|..-.+ | .+..|-.+...--
T Consensus 652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE 730 (913)
T KOG0495|consen 652 RVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE 730 (913)
T ss_pred hhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence 66666666666678899999999888876 355567788888999999999999999887653 4 4558888888888
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 044131 490 LHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKAL 569 (784)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~ 569 (784)
+.|+.-.|..+|++....+ +-|...|...+..=.+.|+.++|..+..+.+++ .+.+-..|.--|.+..+.++-..+.
T Consensus 731 k~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcccchHHH
Confidence 8899999999999988764 456778889999999999999999999888864 3445778888899999999888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 044131 570 EFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKA 649 (784)
Q Consensus 570 ~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~ 649 (784)
+.+++- +-|+.+.-+....+.....++.|...++++++.+|++..++..+-..+...|.-++-.+++++-.... +.
T Consensus 808 DALkkc--e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~ 883 (913)
T KOG0495|consen 808 DALKKC--EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PT 883 (913)
T ss_pred HHHHhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CC
Confidence 887775 45666677777788888999999999999999999999999999999999999999999998776533 33
Q ss_pred CcccEEEE
Q 044131 650 PGCTLIEV 657 (784)
Q Consensus 650 ~g~s~i~~ 657 (784)
-|..|+.+
T Consensus 884 hG~~W~av 891 (913)
T KOG0495|consen 884 HGELWQAV 891 (913)
T ss_pred CCcHHHHH
Confidence 57777644
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.57 E-value=2.4e-11 Score=131.94 Aligned_cols=587 Identities=12% Similarity=0.041 Sum_probs=300.0
Q ss_pred HHHHHHHHhCCCCChhhHhHHHHHhhCCCChhHHHHHhccCCCC----CcchHHHHHHHHhcCCCchhHHHHHHHHHhhC
Q 044131 27 QTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSIPKP----DLFLFNVIIRGFSNNEMPKSSICFYTHLRKNT 102 (784)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~ 102 (784)
.+++.+...|..|+..+|.+||..|+..|+.+.|- +|..|.-+ +...+++++.+..+.++.+.+-+
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpke--------- 80 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPKE--------- 80 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCCC---------
Confidence 35667778899999999999999999999999998 88877543 33457778877777777766654
Q ss_pred CCCCCcccHHHHHHHHhcCCCchHH---HHHHHHHH----HhCC-----------------CCchhHHHHHHHHhhcCCC
Q 044131 103 ALTPDNFTYSFVLSAASACCDRSIG---VLLHGHAI----VSGY-----------------GSDLFVGAALVDLYFKFSW 158 (784)
Q Consensus 103 ~~~p~~~t~~~ll~~~~~~~~~~~a---~~~~~~~~----~~g~-----------------~~d~~~~~~li~~y~~~g~ 158 (784)
|-+.||..++.+|...||+..- ++.+..+. ..|+ -||.. .++....-.|-
T Consensus 81 ---p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~illlv~egl 154 (1088)
T KOG4318|consen 81 ---PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAILLLVLEGL 154 (1088)
T ss_pred ---CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHHHHHHHHH
Confidence 7778888888888888876542 22111111 1121 11111 12222222344
Q ss_pred hHHHHHHhccCCC----------------------------------CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 044131 159 VKSARKVFDKMPE----------------------------------KDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNG 204 (784)
Q Consensus 159 ~~~A~~~f~~~~~----------------------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~ 204 (784)
++.+.++...+|. ++..++.+++.+-.-+|+.+.|..++.+|.+.
T Consensus 155 waqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~- 233 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK- 233 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc-
Confidence 4444444444431 34445555555555566666666666666665
Q ss_pred CCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHH
Q 044131 205 GTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMIS 284 (784)
Q Consensus 205 g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~ 284 (784)
|++.+..-|-.+|-+ .++......+...|.+.|+.|+..|+...+--..+.|....+... . +...-+++-..
T Consensus 234 gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----s-q~~hg~tAavr 305 (1088)
T KOG4318|consen 234 GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----S-QLAHGFTAAVR 305 (1088)
T ss_pred CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----c-chhhhhhHHHH
Confidence 555555544444433 455555555555555566666655555444444333332111111 0 00001111111
Q ss_pred HHHhCC----------CchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCC---CcchHHHHH
Q 044131 285 GYTCNG----------KTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGI---VSNSSVLTA 351 (784)
Q Consensus 285 ~~~~~g----------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~---~~~~~~~~~ 351 (784)
.-+-.| ...-.+..+++..-.|+......|...... ...|.-+...++-+.+..--. ..++..+.+
T Consensus 306 saa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~ 384 (1088)
T KOG4318|consen 306 SAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGA 384 (1088)
T ss_pred HHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHH
Confidence 111111 001111111222222322222222222111 113333344444433322111 112222333
Q ss_pred HHHHHHhcC----------------------CHHHHHHHHhhcCC----------------CChhHH-----------HH
Q 044131 352 LSTVYSRLN----------------------EMEAARKLFDESSE----------------KSLASW-----------NA 382 (784)
Q Consensus 352 Li~~y~~~g----------------------~~~~A~~~f~~~~~----------------~~~~~~-----------~~ 382 (784)
++.-|.+.- +.....++...... +....| +.
T Consensus 385 ~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~q 464 (1088)
T KOG4318|consen 385 LLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQ 464 (1088)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHH
Confidence 333332211 11111111111100 011111 22
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHc--CCCCchhhHhHHHHHHHhc
Q 044131 383 MIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSR--NFESNIYVSTALIDMYAKC 460 (784)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~Li~~y~k~ 460 (784)
++..++..-+..+++..-...... .-| ..|..++.-|.....++.|..+.++.... .+..|..-++.+.+...+.
T Consensus 465 l~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~ 541 (1088)
T KOG4318|consen 465 LHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL 541 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh
Confidence 333333333333333222222111 111 45777888888888888888888877533 3445677788899999999
Q ss_pred CCHHHHHHHHhhcCC-----CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-------------------------
Q 044131 461 GNIVEARELFDLMSH-----KS-EVTWNTMISGYGLHGHGLEALQLFSEMLHSGI------------------------- 509 (784)
Q Consensus 461 g~~~~A~~~f~~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------------------------- 509 (784)
+...++..++.++.+ ++ ..+.--|..+-+..|+.+.-.++++-....|+
T Consensus 542 ~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~ea~e~ 621 (1088)
T KOG4318|consen 542 AILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQEAPEP 621 (1088)
T ss_pred HHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhhhcchH
Confidence 999999999988874 22 22444455666667776666666665554432
Q ss_pred -----CCCHHHHHHHHHHHH---------------------ccCCHHHHHHHHHHhHHhcCC---------------CC-
Q 044131 510 -----RPSGVTFLSVLYACS---------------------HAGLVREGDEIFQSMIHDHGF---------------KP- 547 (784)
Q Consensus 510 -----~pd~~t~~~ll~a~~---------------------~~g~~~~a~~~~~~m~~~~~~---------------~p- 547 (784)
+|.+.....+.+... +.|.+.++.++.+ ..|+ .|
T Consensus 622 ~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~e----tpG~r~r~~RDr~~de~e~~~l 697 (1088)
T KOG4318|consen 622 EEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITE----TPGVRCRNGRDRDTDEGEIVPL 697 (1088)
T ss_pred HHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccc----cCcccccCCCccccccCccccH
Confidence 222222222222221 1222222222111 0111 01
Q ss_pred --------CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCCCc-
Q 044131 548 --------LAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHK---DTNLARVASEKLFELDPENV- 615 (784)
Q Consensus 548 --------~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~l~p~~~- 615 (784)
+..+..-++..|.+.|+++.|..++.++++.|+.....-|+...+.+. |+.++...-+++-++.|..+
T Consensus 698 Ell~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~t 777 (1088)
T KOG4318|consen 698 ELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVSKSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPT 777 (1088)
T ss_pred HHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCCcchHHHHHHHHHHHhhchhccchhHHHHHHHHHhccccccc
Confidence 112233367789999999999999999999999998888888887765 56666666677776655433
Q ss_pred --chHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044131 616 --GYHVLLSNIYSAERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 616 --~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 646 (784)
..|.--+-+..+-...+.|.+.+...++...
T Consensus 778 tt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~ 810 (1088)
T KOG4318|consen 778 TTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT 810 (1088)
T ss_pred chHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC
Confidence 3343333333334444477788888877643
No 34
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=9.4e-11 Score=127.46 Aligned_cols=529 Identities=11% Similarity=0.004 Sum_probs=300.8
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCc
Q 044131 95 YTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDT 174 (784)
Q Consensus 95 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~ 174 (784)
++..|...|+.|+.+||.+++..|+..|+.+.|- ++..|.-...+-...+++.++......++.+.|. +|..
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 5566777888898888999888888888888888 8888887777777788888888888888877665 6777
Q ss_pred ccHHHHHHHHHcCCCchHHHHHHHH-H---HHc---CCCCCChhhHHhHHHHHhccc-c------hhHHHHHHHHHHHhC
Q 044131 175 VLWNSMISGLMKNCCFQDSIWVFGD-M---VRN---GGTWLDSTSVAAVLPAVAEVQ-E------LRLGMEIQCLGLKLG 240 (784)
Q Consensus 175 ~~~~~li~~~~~~g~~~~A~~l~~~-m---~~~---~g~~pd~~t~~~ll~a~~~~~-~------~~~a~~~~~~~~~~g 240 (784)
.+|+.|..+|.+.|+... ++..++ | ... .|+..-..-|...+..|-..- + ...-+.+.+..++.+
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887654 222222 1 110 022111112222222221110 0 011112223333333
Q ss_pred C--CCchhHHHH--HHHHHHh-cCChHHHHHHHhcCC-CCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhH
Q 044131 241 F--HDHVYVLTG--LVSFYSK-CGEVERAELLFRDIV-RPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTI 314 (784)
Q Consensus 241 ~--~~~~~~~~~--li~~y~~-~g~~~~A~~~f~~~~-~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 314 (784)
. +........ .++-... ...+++-........ .++..++.+.+..-..+|+.+.|..++.+|.+.|.+.+.+-|
T Consensus 163 ~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 1 111111111 1111111 112333333333333 388999999999999999999999999999999999999999
Q ss_pred HhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCh-
Q 044131 315 VGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLT- 393 (784)
Q Consensus 315 ~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~- 393 (784)
..+|-+ .++......+...|...|+.|+..++.--+-...+.|....+....+.-.--....+..+..+...+.+.
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~ 319 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLR 319 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHH
Confidence 888866 7888889999999999999999999887776666655533333222111111122233333331111111
Q ss_pred ----hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCC---CchhhHhHHHHHHHhcCCHHHH
Q 044131 394 ----EEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFE---SNIYVSTALIDMYAKCGNIVEA 466 (784)
Q Consensus 394 ----~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~---~~~~~~~~Li~~y~k~g~~~~A 466 (784)
.-....+.+..-.|+......|.... -....|.-+...++-+.+..-... .++..+.++ +
T Consensus 320 ~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~------------l 386 (1088)
T KOG4318|consen 320 QNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL------------L 386 (1088)
T ss_pred HHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHH------------H
Confidence 11222333333334433333332222 222356666667766666432211 122223333 3
Q ss_pred HHHHhhcCCCCHH-HHHHHHHHHHH---cCCHHHHHHHHHHH------------HH----CCCCC-------CHHHHHHH
Q 044131 467 RELFDLMSHKSEV-TWNTMISGYGL---HGHGLEALQLFSEM------------LH----SGIRP-------SGVTFLSV 519 (784)
Q Consensus 467 ~~~f~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~m------------~~----~g~~p-------d~~t~~~l 519 (784)
+..|.+...+... .++ .-.+... ..+..+..++.... .. .-..| =...-..+
T Consensus 387 rqyFrr~e~~~~~~i~~-~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql 465 (1088)
T KOG4318|consen 387 RQYFRRIERHICSRIYY-AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQL 465 (1088)
T ss_pred HHHHHHHHhhHHHHHHH-HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHH
Confidence 4444444433222 111 1111111 11111111111111 10 00111 11123445
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhc
Q 044131 520 LYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-----VEPGPAVWGALLGACMIH 594 (784)
Q Consensus 520 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-----~~p~~~~~~~ll~a~~~~ 594 (784)
+..|...-+..+++..-+... .+-+ ...|..||+.+.+..++++|..+.++.. +.-|..-+..+.....++
T Consensus 466 ~l~l~se~n~lK~l~~~ekye-~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~ 541 (1088)
T KOG4318|consen 466 HLTLNSEYNKLKILCDEEKYE-DLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRL 541 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHh
Confidence 556666656566554433332 2111 2678999999999999999999998874 233455677788888888
Q ss_pred CCHHHHHHHHHHHhc---CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccE
Q 044131 595 KDTNLARVASEKLFE---LDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTL 654 (784)
Q Consensus 595 g~~~~a~~~~~~~~~---l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~ 654 (784)
+....+..+.+..-+ ..|.......-+-|--+.+|+-+...+..+-+...|+.- .|--|
T Consensus 542 ~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~ 603 (1088)
T KOG4318|consen 542 AILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLW 603 (1088)
T ss_pred HHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccce
Confidence 888888887776654 334444455566677788999999999999998888765 34444
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=1.6e-11 Score=123.45 Aligned_cols=472 Identities=11% Similarity=0.032 Sum_probs=284.8
Q ss_pred HhcCCCchHHHHHHHHHHHhCCCCchhH-HHHHHHHhhcCCChHHHHHHhc----cCCCCC----cccHHHHHHHHHcCC
Q 044131 118 ASACCDRSIGVLLHGHAIVSGYGSDLFV-GAALVDLYFKFSWVKSARKVFD----KMPEKD----TVLWNSMISGLMKNC 188 (784)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~~g~~~d~~~-~~~li~~y~~~g~~~~A~~~f~----~~~~~~----~~~~~~li~~~~~~g 188 (784)
+.......+|...++-+++..+-|+.-. --.+-+.|.|...+..|.+.++ ..|.-+ +...|.+--.+.+.|
T Consensus 211 y~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~g 290 (840)
T KOG2003|consen 211 YEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAG 290 (840)
T ss_pred hhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecc
Confidence 3333445566666666666655555422 1223345566666777766553 233211 122333444567777
Q ss_pred CchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 044131 189 CFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLF 268 (784)
Q Consensus 189 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 268 (784)
+++.|+..|+...+. .||..+-..++-.+...|+-+..++.|..++..-..+|..-| .+
T Consensus 291 qy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky-------i~----------- 349 (840)
T KOG2003|consen 291 QYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY-------IK----------- 349 (840)
T ss_pred cchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc-------cC-----------
Confidence 777777777776643 566665555555555566666666666666654333322111 00
Q ss_pred hcCCCCCeeeHHHHH-----HHHHhC--CCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhC
Q 044131 269 RDIVRPDLISCNAMI-----SGYTCN--GKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSG 341 (784)
Q Consensus 269 ~~~~~~d~~~~~~li-----~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g 341 (784)
.-..||....|.-| ...-+. .+.++++-.-.++..--+.||-.. ..+-..+.+.......
T Consensus 350 -~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~ 416 (840)
T KOG2003|consen 350 -EKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAE 416 (840)
T ss_pred -CcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhh
Confidence 00012222222211 111111 111222222222222122222110 0011111111111000
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHH----HHH-HHHHHhCC-ChhHHHHHHHHHHhCCCCCCHHHH
Q 044131 342 IVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASW----NAM-IAGYTQNG-LTEEAISLFQEMQASKVAPNPVTV 415 (784)
Q Consensus 342 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~----~~l-i~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~ 415 (784)
+..+.. -.-..-|.+.|+++.|.+++.-...+|..+- |.| .--|.+.| ++..|.++-+...... +-|....
T Consensus 417 la~dle--i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~ 493 (840)
T KOG2003|consen 417 LAIDLE--INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAAL 493 (840)
T ss_pred hhhhhh--hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHh
Confidence 111111 1122356789999999998887776654322 222 22334433 4566665555444321 2233333
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcC
Q 044131 416 SSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHG 492 (784)
Q Consensus 416 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g 492 (784)
+.--+.....|++++|.+.+..+....-......||. .-.|-+.|++++|++.|-++. ..++...-.+.+.|....
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~le 572 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLE 572 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 3223333456899999999999987654333344443 335788999999999998765 467777788889999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC-CCCcchHHHHHHHHHhcCCHHHHHHH
Q 044131 493 HGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGF-KPLAEHYACMVDILGRAGQLEKALEF 571 (784)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~lv~~l~r~g~~~eA~~~ 571 (784)
+...|++++.+.... ++.|+..+..|...|-+.|+-.+|.+++-.- |.. +-+.++..-|..-|....-+++|..+
T Consensus 573 d~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~yds---yryfp~nie~iewl~ayyidtqf~ekai~y 648 (840)
T KOG2003|consen 573 DPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDS---YRYFPCNIETIEWLAAYYIDTQFSEKAINY 648 (840)
T ss_pred CHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhc---ccccCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999887764 5667778888999999999999999887643 343 44688888899999999999999999
Q ss_pred HHhCC-CCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 044131 572 IKGLA-VEPGPAVWGALLGAC-MIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDY 631 (784)
Q Consensus 572 ~~~m~-~~p~~~~~~~ll~a~-~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 631 (784)
|++.. ++|+..-|.-++..| ++.||+..|...|+..-..-|++....-.|..+....|.-
T Consensus 649 ~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 649 FEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence 99985 899999999998877 5689999999999999999999999988898888777753
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=4.1e-14 Score=146.21 Aligned_cols=253 Identities=17% Similarity=0.141 Sum_probs=112.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-HHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCC
Q 044131 384 IAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILS-ACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGN 462 (784)
Q Consensus 384 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 462 (784)
...+.+.|++++|++++++.......|+...|-.++. .+-..++.+.|.+.++.+...+ +.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 4455666777777777755443322344444444333 3445677777777777777655 2355566677766 68888
Q ss_pred HHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 044131 463 IVEARELFDLMS--HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSG-IRPSGVTFLSVLYACSHAGLVREGDEIFQSM 539 (784)
Q Consensus 463 ~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 539 (784)
+++|.+++...- .++...|..++..+.+.|+++++.+++++..... .++|...|..+...+.+.|+.++|.+.++..
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 899988887654 3566778888888999999999999999977543 3456667778888889999999999999998
Q ss_pred HHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc
Q 044131 540 IHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVG 616 (784)
Q Consensus 540 ~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 616 (784)
++. .|+ ......++.++...|+.+++.++++... .+.|+..|..+..++...|+.+.|...++++.+.+|+|+.
T Consensus 173 l~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 173 LEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 854 575 7778889999999999999888887652 2456668999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 617 YHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 617 ~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
....+++++...|+.++|.++++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHT---------------
T ss_pred ccccccccccccccccccccccccc
Confidence 9999999999999999999998754
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.43 E-value=1.3e-10 Score=116.93 Aligned_cols=435 Identities=12% Similarity=0.123 Sum_probs=274.5
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHh-HHHHHhcccchhHHHHHHHHHHHhCCCCch----hHHHHHHHH
Q 044131 180 MISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAA-VLPAVAEVQELRLGMEIQCLGLKLGFHDHV----YVLTGLVSF 254 (784)
Q Consensus 180 li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~-ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~----~~~~~li~~ 254 (784)
|..-|..+....+|+..|+-+.+. ..-||.-.+.. +-+.+.+.+++..|...+...+..-...+. .+.|.+--.
T Consensus 207 laqqy~~ndm~~ealntyeiivkn-kmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 207 LAQQYEANDMTAEALNTYEIIVKN-KMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHhhhhHHHHHHhhhhhhhhcc-cccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 445566677888888888888777 66676654322 223345566677777777766654322222 233444445
Q ss_pred HHhcCChHHHHHHHhcCCC--CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHH
Q 044131 255 YSKCGEVERAELLFRDIVR--PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNC 332 (784)
Q Consensus 255 y~~~g~~~~A~~~f~~~~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 332 (784)
+.+.|.+++|..-|+...+ |+..+--.||-.+..-|+.++..+.|.+|......||..-|.. .
T Consensus 286 fiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~-------~-------- 350 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIK-------E-------- 350 (840)
T ss_pred EEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccC-------C--------
Confidence 6777888888888877633 5555544445555556777777777877776655555443311 0
Q ss_pred HHHHHHHhCCCcchHHHHHHH-----HHHHhcC--CHHH----HHHHHhhcCCCChh---HHHH----------------
Q 044131 333 IHSFCLKSGIVSNSSVLTALS-----TVYSRLN--EMEA----ARKLFDESSEKSLA---SWNA---------------- 382 (784)
Q Consensus 333 i~~~~~~~g~~~~~~~~~~Li-----~~y~~~g--~~~~----A~~~f~~~~~~~~~---~~~~---------------- 382 (784)
.-.|+....|--+ .-..+.. +-++ |.++..-+..++.. -|..
T Consensus 351 --------~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dle 422 (840)
T KOG2003|consen 351 --------KDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLE 422 (840)
T ss_pred --------cCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhh
Confidence 0011111111111 1111111 1111 11222222222211 1211
Q ss_pred --HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHH--HHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHH
Q 044131 383 --MIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSS--ILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYA 458 (784)
Q Consensus 383 --li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~--ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 458 (784)
-...|.++|+++.|++++.-..+..-+.-...-+. .|.-...-.++..|.+.-+.++... .-+....+.-.+.-.
T Consensus 423 i~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f 501 (840)
T KOG2003|consen 423 INKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAF 501 (840)
T ss_pred hhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceee
Confidence 12357899999999999988876543322222222 2222222335666666666555322 112222222223344
Q ss_pred hcCCHHHHHHHHhhcCCCCHHHHHHHHH---HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 044131 459 KCGNIVEARELFDLMSHKSEVTWNTMIS---GYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEI 535 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~~~~~~~~~~li~---~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 535 (784)
..|+++.|.+.+++....|..+-.+|.. .+-..|+.++|++.|-++..- +..+...+..+.+.|....+..+|.++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 5799999999999999887765555543 367789999999999887653 345666777888889999999999999
Q ss_pred HHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHH-HhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 044131 536 FQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFI-KGLA-VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDP 612 (784)
Q Consensus 536 ~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~-~~m~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p 612 (784)
+.+.. .+.| |+...+.|.++|-+.|+-..|.+.. +... ++-+..+...|...|....-.+.+...++++--+.|
T Consensus 581 ~~q~~---slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp 657 (840)
T KOG2003|consen 581 LMQAN---SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQP 657 (840)
T ss_pred HHHhc---ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCc
Confidence 98775 4455 5889999999999999999998875 4444 334555655566666667778999999999999999
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 613 ENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 613 ~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+.+....+++..+.+.|++..|.++++.+..
T Consensus 658 ~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 658 NQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred cHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9988889999999999999999999988764
No 38
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.43 E-value=6.9e-09 Score=105.66 Aligned_cols=482 Identities=13% Similarity=0.101 Sum_probs=340.1
Q ss_pred cCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHH
Q 044131 155 KFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGME 231 (784)
Q Consensus 155 ~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 231 (784)
..+++..|+.+|++... ++...|--.+..=.++.....|..++++.... -.+.|..-| --+-.=-.+|++..|++
T Consensus 85 sq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWy-KY~ymEE~LgNi~gaRq 162 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWY-KYIYMEEMLGNIAGARQ 162 (677)
T ss_pred hHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHH-HHHHHHHHhcccHHHHH
Confidence 45677788888887664 56777887888888888888888888887754 223333322 22223345688888888
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcC--CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHc-C-C
Q 044131 232 IQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDI--VRPDLISCNAMISGYTCNGKTESSLRLFRQLLAS-A-E 307 (784)
Q Consensus 232 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~--~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-~ 307 (784)
+|+.-.+ .+|+...|++.|++=.+...++.|+.++++. ..|++.+|--...-=.++|+..-|..+|....+. | -
T Consensus 163 iferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d 240 (677)
T KOG1915|consen 163 IFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDD 240 (677)
T ss_pred HHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhH
Confidence 8888765 5788899999999988889999999999886 5588888888777777888888888888876553 1 0
Q ss_pred CCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCc-chHHHHHHHHHHHhcCCHHHHHHH--------HhhcCCC---
Q 044131 308 RVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVS-NSSVLTALSTVYSRLNEMEAARKL--------FDESSEK--- 375 (784)
Q Consensus 308 ~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~~~g~~~~A~~~--------f~~~~~~--- 375 (784)
.-+...|++...-=......+.+.-|+...+..-... ...++..+...--+.|+....... ++.+...
T Consensus 241 ~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~ 320 (677)
T KOG1915|consen 241 EEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC
Confidence 1112233333333334567788888888887763222 245566666655566665443332 2223333
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHH---hhhCchHHHHHHHHHHHHcCCCC
Q 044131 376 SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNP-------VTVSSILSAC---AQLGAISLGKWVHELVKSRNFES 445 (784)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~---~~~~~~~~a~~i~~~~~~~g~~~ 445 (784)
|-.+|--.+..--..|+.+...++|.+.... ++|-. ..|.-+=-+| ....+.+.++++++..++ -++.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lIPH 398 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LIPH 398 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hcCc
Confidence 4457777777777889999999999999875 56632 1222221222 356789999999999988 3455
Q ss_pred chhhHhHHHHHHH----hcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 044131 446 NIYVSTALIDMYA----KCGNIVEARELFDLMS--HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSV 519 (784)
Q Consensus 446 ~~~~~~~Li~~y~----k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l 519 (784)
..+++.-+=-||+ ++-++..|++++.... .|-..++...|..-.+.+.++....+|++.++-+ +-|..++...
T Consensus 399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~ky 477 (677)
T KOG1915|consen 399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKY 477 (677)
T ss_pred ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHH
Confidence 6677776666665 6889999999998876 5777888888888899999999999999999954 4466788877
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHH-----h
Q 044131 520 LYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEPGPAVWGALLGACM-----I 593 (784)
Q Consensus 520 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~a~~-----~ 593 (784)
...=...|+.|.|..+|+-.+..-.+......|.+.||.=...|.++.|..++++.- ..+...+|-++..--. .
T Consensus 478 aElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~ 557 (677)
T KOG1915|consen 478 AELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQ 557 (677)
T ss_pred HHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccc
Confidence 777788999999999999988654444445678888888899999999999999873 4556668988776433 3
Q ss_pred cC-----------CHHHHHHHHHHHhc----CCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 594 HK-----------DTNLARVASEKLFE----LDPENV--GYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 594 ~g-----------~~~~a~~~~~~~~~----l~p~~~--~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.+ ++..|..+++++.. .+|... ......-++-...|.-.+...|-++|.+
T Consensus 558 ~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk 624 (677)
T KOG1915|consen 558 EDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPK 624 (677)
T ss_pred cccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccH
Confidence 34 56778888888764 334222 2223344566677888888888877754
No 39
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=1.6e-09 Score=110.72 Aligned_cols=400 Identities=15% Similarity=0.093 Sum_probs=229.3
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHcCCCCCC-hhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCc-hhHHHHHHHHHH
Q 044131 179 SMISGLMKNCCFQDSIWVFGDMVRNGGTWLD-STSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDH-VYVLTGLVSFYS 256 (784)
Q Consensus 179 ~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~-~~~~~~li~~y~ 256 (784)
..-.-|.++|.+++|++.|.+.. ...|| ++-|...-.+|...|+|+...+--...++ +.|+ +..+..-.+++-
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI---~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAI---ELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHE 194 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHH---hcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHH
Confidence 34455778899999999999888 45788 55566666666888999888877766665 3444 334555566777
Q ss_pred hcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHH--------HHHc---CCCCChhhHHhHHHhhcCCC
Q 044131 257 KCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQ--------LLAS---AERVNSSTIVGLIPVFYPFG 325 (784)
Q Consensus 257 ~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~--------m~~~---g~~p~~~t~~~ll~~~~~~~ 325 (784)
+.|++++|..= +|-.++..+|....-.--+.+++++ -... .+.|......+.+..+...-
T Consensus 195 ~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 77888877531 2233333444333322223333322 1121 13355444444444332110
Q ss_pred ChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhc-CCHHHHHHHHhhc-------CCCC---h------hHHHHHHHHHH
Q 044131 326 HLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRL-NEMEAARKLFDES-------SEKS---L------ASWNAMIAGYT 388 (784)
Q Consensus 326 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~-g~~~~A~~~f~~~-------~~~~---~------~~~~~li~~~~ 388 (784)
.. .+...+-..|......+-..|... ..+..|...+.+- ...+ . .+.+.-..-+.
T Consensus 266 ~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f 337 (606)
T KOG0547|consen 266 KP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF 337 (606)
T ss_pred cc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence 00 000000011222222222222211 1122222222210 0001 0 00000011122
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHH
Q 044131 389 QNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARE 468 (784)
Q Consensus 389 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 468 (784)
-.|+.-.|.+.|+..+.....++ ..|--+..+|....+.++...
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~------------------------------------~lyI~~a~~y~d~~~~~~~~~ 381 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFN------------------------------------SLYIKRAAAYADENQSEKMWK 381 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccc------------------------------------hHHHHHHHHHhhhhccHHHHH
Confidence 23444444444444444322222 113333344555555555555
Q ss_pred HHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 044131 469 LFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHG 544 (784)
Q Consensus 469 ~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 544 (784)
.|+...+ .|..+|.--...+.-.+++++|+.=|++.+. +.|+ ...|..+-.+..+.+.++++...|+...+++
T Consensus 382 ~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF- 458 (606)
T KOG0547|consen 382 DFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF- 458 (606)
T ss_pred HHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-
Confidence 5554431 2333444444444555677788888887777 4554 4567777777788888999999999887643
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 545 FKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEPG---------PAVWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 545 ~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~---------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
+-.++.|+-....|...++++.|.+.++.. .++|+ +.+..+++-.-.+ +|+.+|+.+.+++++++|..
T Consensus 459 -P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkc 536 (606)
T KOG0547|consen 459 -PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKC 536 (606)
T ss_pred -CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchH
Confidence 444788999999999999999999998764 34443 4455555554433 99999999999999999999
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 615 VGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 615 ~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
...|..|+.+-.+.|+.++|.++|+.-
T Consensus 537 e~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 537 EQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999999764
No 40
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.39 E-value=2.9e-08 Score=104.97 Aligned_cols=491 Identities=14% Similarity=0.102 Sum_probs=385.8
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCc
Q 044131 114 VLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCCF 190 (784)
Q Consensus 114 ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 190 (784)
|=++.....+.+.|+-++..+++.- +.+... .-+|++.--++.|.+++++..+ .+...|-+-..-=-++|+.
T Consensus 382 LWKaAVelE~~~darilL~rAvecc-p~s~dL----wlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~ 456 (913)
T KOG0495|consen 382 LWKAAVELEEPEDARILLERAVECC-PQSMDL----WLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNV 456 (913)
T ss_pred HHHHHHhccChHHHHHHHHHHHHhc-cchHHH----HHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCH
Confidence 3345556677788999999988864 333333 4456667778889999877654 4777887766666678888
Q ss_pred hHHHHHHHH----HHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCChHHH
Q 044131 191 QDSIWVFGD----MVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHD--HVYVLTGLVSFYSKCGEVERA 264 (784)
Q Consensus 191 ~~A~~l~~~----m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~li~~y~~~g~~~~A 264 (784)
+....+..+ +..+ |+..|..-|..=..+|-..|..-.+..+...++..|++. -..+|+.-.+.+.+.+.++-|
T Consensus 457 ~mv~kii~rgl~~L~~n-gv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ca 535 (913)
T KOG0495|consen 457 DMVEKIIDRGLSELQAN-GVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECA 535 (913)
T ss_pred HHHHHHHHHHHHHHhhc-ceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHH
Confidence 887777655 4556 899999999999999999999999999999999888764 356888889999999999999
Q ss_pred HHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhC
Q 044131 265 ELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSG 341 (784)
Q Consensus 265 ~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g 341 (784)
+.+|....+ .+...|...+..--..|..++-..+|++.... .+-....+....+..-..|++..++.++..+....
T Consensus 536 rAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~ 614 (913)
T KOG0495|consen 536 RAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN 614 (913)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Confidence 999987755 45667887777667789999999999998875 23333444444555566799999999999998876
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-HHHHHH
Q 044131 342 IVSNSSVLTALSTVYSRLNEMEAARKLFDESSE--KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNP-VTVSSI 418 (784)
Q Consensus 342 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~l 418 (784)
+.+..+|-+-+..-.....++.|+.+|.+... +....|.--+..---.+..++|++++++.++. -|+- ..|..+
T Consensus 615 -pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lml 691 (913)
T KOG0495|consen 615 -PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLML 691 (913)
T ss_pred -CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHH
Confidence 44788999999999999999999999987654 45567776666666778999999999988874 4554 455666
Q ss_pred HHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHH
Q 044131 419 LSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGL 495 (784)
Q Consensus 419 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~ 495 (784)
-..+-+.++.+.|+..|..=.+. ++..+..|-.|...--+.|.+-.|+.+|++.. .+|...|-..|..-.+.|..+
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~ 770 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKE 770 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHH
Confidence 66777888888888877665543 35567889999999999999999999999876 357889999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 044131 496 EALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL 575 (784)
Q Consensus 496 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m 575 (784)
.|..+..+.++. .+.+...|..-|...-+.++-......+. ..+-|....-.+..++-...+++.|.+.|++.
T Consensus 771 ~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALk------kce~dphVllaia~lfw~e~k~~kar~Wf~Ra 843 (913)
T KOG0495|consen 771 QAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALK------KCEHDPHVLLAIAKLFWSEKKIEKAREWFERA 843 (913)
T ss_pred HHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHH------hccCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998886 56666777777766666666444443333 33456677778888899999999999999887
Q ss_pred -CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 576 -AVEPGPA-VWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 576 -~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
...||.. +|..+..-...||.-+.-+.++.+...-+|.....+...+
T Consensus 844 vk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avS 892 (913)
T KOG0495|consen 844 VKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVS 892 (913)
T ss_pred HccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHh
Confidence 4677654 9999999999999999999999999999999876665544
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.39 E-value=3.9e-11 Score=127.50 Aligned_cols=242 Identities=15% Similarity=0.142 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcC--CCCchhhHhHHHHHHHhcCCHHH-HHHH
Q 044131 393 TEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRN--FESNIYVSTALIDMYAKCGNIVE-AREL 469 (784)
Q Consensus 393 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~~~~~~~~~~Li~~y~k~g~~~~-A~~~ 469 (784)
..+|+..|..... .+.-.......+..+|..++++++++.+|+.+.+.. ...+..+|++.+--+-+.=.+.. |..+
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 4555555555222 222233444455555666666666666666555432 01134445444432222111111 1111
Q ss_pred HhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC
Q 044131 470 FDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL 548 (784)
Q Consensus 470 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 548 (784)
. .+......+|-++..+|.-.++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+..+ ..+
T Consensus 414 i-~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-----~~~ 485 (638)
T KOG1126|consen 414 I-DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-----GVD 485 (638)
T ss_pred H-hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh-----cCC
Confidence 1 11223455666666666666666666666666666 445 44555555555555666666666666544 334
Q ss_pred cchHHHH---HHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 549 AEHYACM---VDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 549 ~~~~~~l---v~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
..||+++ .-.|.+.++++.|+-.|++. .+.|. .++...+...+...|+.|+|.+.+++++.++|.|+-.-+..+.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~ 565 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS 565 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence 4455543 33456666666666666655 35553 3344555556666666666666666666666666666666666
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 044131 624 IYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 624 ~y~~~g~~~~a~~~~~~m~~ 643 (784)
++...+++++|...++.+++
T Consensus 566 il~~~~~~~eal~~LEeLk~ 585 (638)
T KOG1126|consen 566 ILFSLGRYVEALQELEELKE 585 (638)
T ss_pred HHHhhcchHHHHHHHHHHHH
Confidence 66666666666666666665
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=1.3e-09 Score=110.88 Aligned_cols=245 Identities=16% Similarity=0.124 Sum_probs=181.4
Q ss_pred hCCChhHHHHHHHHHHhCCC-C-CCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHH
Q 044131 389 QNGLTEEAISLFQEMQASKV-A-PNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEA 466 (784)
Q Consensus 389 ~~g~~~~A~~l~~~m~~~g~-~-pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 466 (784)
...++++|+.+|+++.+... + -|..||+.+|-.-.....+.---+....+ . .--+.+...+.+-|+-.++.+.|
T Consensus 274 ~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~i--d--KyR~ETCCiIaNYYSlr~eHEKA 349 (559)
T KOG1155|consen 274 NQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNI--D--KYRPETCCIIANYYSLRSEHEKA 349 (559)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHh--c--cCCccceeeehhHHHHHHhHHHH
Confidence 34566667777776666521 1 14556666664332222111111111111 1 12345667777888888999999
Q ss_pred HHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 044131 467 RELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDH 543 (784)
Q Consensus 467 ~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 543 (784)
...|++..+ +....|+.|..-|....+...|++.+++.++-. +-|...|.+|..+|.-.+...-|+-+|++..
T Consensus 350 v~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~--- 425 (559)
T KOG1155|consen 350 VMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL--- 425 (559)
T ss_pred HHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---
Confidence 999988764 456689999999999999999999999998842 4577889999999999999999999999876
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-------CCCC
Q 044131 544 GFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVASEKLFE-------LDPE 613 (784)
Q Consensus 544 ~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-------l~p~ 613 (784)
.+.|+ ...|.+|.+.|.+.++++||++.+++.- -..+...+..|...+-..++.++|...+++-++ .+|+
T Consensus 426 ~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~ 505 (559)
T KOG1155|consen 426 ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDE 505 (559)
T ss_pred hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchH
Confidence 55665 8899999999999999999999998873 233557888999999999999999999998887 4555
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 614 NVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 614 ~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
...+-.-|++-+.+.++|++|...-...
T Consensus 506 t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 506 TIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 5556677999999999999998765543
No 43
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=3.5e-10 Score=122.46 Aligned_cols=224 Identities=13% Similarity=0.050 Sum_probs=140.1
Q ss_pred HHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchH
Q 044131 353 STVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAIS 429 (784)
Q Consensus 353 i~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~ 429 (784)
...+...|+++.|...++...+ .+......+...|.+.|++++|.+++..+.+.+..++. .+..+-
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~---------- 228 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLE---------- 228 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHH----------
Confidence 4556666666666666665543 24445566666666667777777777766665433211 111000
Q ss_pred HHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 430 LGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 430 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
...+..++....+..+.+...++++.++ ..++..+..+..++...|+.++|.+++++..+
T Consensus 229 -----------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~ 291 (398)
T PRK10747 229 -----------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLK 291 (398)
T ss_pred -----------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0112222222233334455555556555 24666777777778888888888888877776
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHH
Q 044131 507 SGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPAVW 584 (784)
Q Consensus 507 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~ 584 (784)
. +||... .++.+....++.+++.+..+...+. .|+ ...+.++..++.+.|++++|.+.|+.. ...|+...+
T Consensus 292 ~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~ 364 (398)
T PRK10747 292 R--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDY 364 (398)
T ss_pred c--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH
Confidence 3 444421 1233334457788888888877754 343 556777788888888888888888776 467888887
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 044131 585 GALLGACMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 585 ~~ll~a~~~~g~~~~a~~~~~~~~~l~ 611 (784)
..|..++...|+.++|...+++.+.+-
T Consensus 365 ~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 365 AWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 788888888888888888888887653
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.36 E-value=4.4e-10 Score=121.68 Aligned_cols=273 Identities=10% Similarity=0.046 Sum_probs=205.3
Q ss_pred cCCHHHHHHHHhhcCCC--Chh-HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHhhhCchHHHHH
Q 044131 359 LNEMEAARKLFDESSEK--SLA-SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVS--SILSACAQLGAISLGKW 433 (784)
Q Consensus 359 ~g~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~--~ll~a~~~~~~~~~a~~ 433 (784)
.|+++.|++.+...++. +.. .+-.......+.|++++|...|.++.+. .|+..... .....+...|+++.|.+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 68899999888876553 222 3322233447889999999999999864 56554333 33456778899999999
Q ss_pred HHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCC---CH--------HHHHHHHHHHHHcCCHHHHHHHHH
Q 044131 434 VHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHK---SE--------VTWNTMISGYGLHGHGLEALQLFS 502 (784)
Q Consensus 434 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~~ 502 (784)
.++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+. +. .+|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999998876 667888999999999999999999999888742 11 134444444444555566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-
Q 044131 503 EMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEPG- 580 (784)
Q Consensus 503 ~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~- 580 (784)
..-.. .+.+......+..++...|+.++|.+.++...+ ..|+.... ++......|+.+++.+.+++. ...|+
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65433 355777888899999999999999999998874 34554222 222333559999999999887 34554
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 581 PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 581 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
+..+.++...|...++++.|+..++++++.+|++. .+..|+.++.+.|+-++|.+.++.-
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55788899999999999999999999999999864 5779999999999999999998754
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.32 E-value=4.1e-09 Score=114.82 Aligned_cols=221 Identities=9% Similarity=-0.052 Sum_probs=99.7
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhh-------HhHHHHH
Q 044131 384 IAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYV-------STALIDM 456 (784)
Q Consensus 384 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~-------~~~Li~~ 456 (784)
...+.+.|++++|...++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.... +..+++.
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~ 238 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDE 238 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555432 11233444444455555555555555555555443221111 1111111
Q ss_pred HHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHccCCHH
Q 044131 457 YAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTF---LSVLYACSHAGLVR 530 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~---~~ll~a~~~~g~~~ 530 (784)
-......+...+.++..++ .+...+..+...+...|+.++|++++++..+. .||.... ..........++.+
T Consensus 239 ~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~ 316 (409)
T TIGR00540 239 AMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNE 316 (409)
T ss_pred HHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChH
Confidence 1112223344444444442 36677777777777777777777777777774 3443311 11111112234455
Q ss_pred HHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKG---LAVEPGPAVWGALLGACMIHKDTNLARVASEKL 607 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~---m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 607 (784)
.+.+.++...+...-.|+.....++..++.+.|++++|.+.|++ ....|+...+..|...+...|+.+.|.+++++.
T Consensus 317 ~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 317 KLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555554443321111112333444444444444444444441 123444444444444444444444444444443
No 46
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=1.8e-10 Score=122.56 Aligned_cols=275 Identities=13% Similarity=0.036 Sum_probs=213.8
Q ss_pred CHHHHHHHHhhcCCC--Chh-HHHHHHHHHHhCCChhHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhhhCchHHHHHHH
Q 044131 361 EMEAARKLFDESSEK--SLA-SWNAMIAGYTQNGLTEEAISLFQEMQASK--VAPNPVTVSSILSACAQLGAISLGKWVH 435 (784)
Q Consensus 361 ~~~~A~~~f~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 435 (784)
...+|...|..++.. |.. ...-+..+|...+++++|.++|+...+.. ..-+...|+++|--+-+. .+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 457888888886543 333 33445678999999999999999998752 112556777777544321 111222
Q ss_pred H-HHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044131 436 E-LVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHK---SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP 511 (784)
Q Consensus 436 ~-~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 511 (784)
. .+++.. +..+.+|.++.+.|+-+++.+.|++.|++..+- ...+|+.+..-+.....++.|...|+..+. +.|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 222222 556889999999999999999999999998853 556888888888999999999999998875 455
Q ss_pred CH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 044131 512 SG-VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGAL 587 (784)
Q Consensus 512 d~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~l 587 (784)
.. ..|..+...|.+.++++.|+-.|+... .|.|. .....++...+-+.|+.|+|++++++. .+.| |+..----
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 44 467788899999999999999999887 77886 667778888999999999999999987 3444 44444444
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 645 (784)
...+...++.++|.+.+|++-++-|+++..|.+++.+|.+.|+.+.|..-+..+.+-.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 5556678999999999999999999999999999999999999999998887766533
No 47
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.30 E-value=2.4e-08 Score=101.76 Aligned_cols=347 Identities=12% Similarity=0.133 Sum_probs=250.5
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhc--CCCChhHHHHHHHHHHhCCChhHHHHHHH
Q 044131 324 FGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDES--SEKSLASWNAMIAGYTQNGLTEEAISLFQ 401 (784)
Q Consensus 324 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 401 (784)
.|++..+++++..-.+ .+|+...|++.|+.-.+...++.|+.++++. ..|++.+|--...-=-++|...-|..+|.
T Consensus 154 LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 4566666666665543 4788888888888888888888888888873 46788888777776777888888888887
Q ss_pred HHHhCCCCCCHHHHHHHHHHH----hhhCchHHHHHHHHHHHHcCCCCc--hhhHhHHHHHHHhcCCHHHHHHHH-----
Q 044131 402 EMQASKVAPNPVTVSSILSAC----AQLGAISLGKWVHELVKSRNFESN--IYVSTALIDMYAKCGNIVEARELF----- 470 (784)
Q Consensus 402 ~m~~~g~~pd~~t~~~ll~a~----~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~Li~~y~k~g~~~~A~~~f----- 470 (784)
..... -.|...-..+..++ ......+.|.-++..+++.- +.+ ...|..+...--+-|+......+.
T Consensus 232 rAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk 308 (677)
T KOG1915|consen 232 RAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRK 308 (677)
T ss_pred HHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhh
Confidence 77653 22333333334444 35567888999999988762 333 455666665555566654443332
Q ss_pred ---hhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHH---HccCCHHHHHH
Q 044131 471 ---DLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV-------TFLSVLYAC---SHAGLVREGDE 534 (784)
Q Consensus 471 ---~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-------t~~~ll~a~---~~~g~~~~a~~ 534 (784)
+.+.. -|-.+|--.+..-...|+.+...++|++.+.. ++|-.. .|.-+=.+| ....+++.+.+
T Consensus 309 ~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~ 387 (677)
T KOG1915|consen 309 FQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ 387 (677)
T ss_pred hHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 22222 36678988888888889999999999999976 677331 233332333 34788999999
Q ss_pred HHHHhHHhcCCCCC-cchHHHHHHHH----HhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 535 IFQSMIHDHGFKPL-AEHYACMVDIL----GRAGQLEKALEFIKGL-AVEPGPAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 535 ~~~~m~~~~~~~p~-~~~~~~lv~~l----~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
+|+..++ +.|. ..+++-+--+| .|+-++..|.+.+... +.-|..-++...+..-.+.++++....+|++.+
T Consensus 388 vyq~~l~---lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 388 VYQACLD---LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHh---hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999873 5565 55666555444 4888999999999765 688999999999999999999999999999999
Q ss_pred cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHH
Q 044131 609 ELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEK 683 (784)
Q Consensus 609 ~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~ 683 (784)
+..|.+..++...+.+-...|++|.|..++....+......|..-|- ....|-.....+..+..+|..|-+
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk----aYIdFEi~~~E~ekaR~LYerlL~ 535 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK----AYIDFEIEEGEFEKARALYERLLD 535 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH----HhhhhhhhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988777667777662 112333333445566666665533
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.29 E-value=2.6e-09 Score=116.30 Aligned_cols=278 Identities=12% Similarity=0.027 Sum_probs=200.2
Q ss_pred HhcCCHHHHHHHHhhcCCC--C-hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHhhhCchHHH
Q 044131 357 SRLNEMEAARKLFDESSEK--S-LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPV--TVSSILSACAQLGAISLG 431 (784)
Q Consensus 357 ~~~g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~~~~~~~~~a 431 (784)
...|+++.|.+.+.+..+. + ...+-.....+.+.|++++|.+.|.+..+.. |+.. .-..........|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 3578999999988776543 2 2333444566778899999999999987643 4432 333346677789999999
Q ss_pred HHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHH----HHHHHHHcCCHHHHHHHHHHH
Q 044131 432 KWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNT----MISGYGLHGHGLEALQLFSEM 504 (784)
Q Consensus 432 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~----li~~~~~~g~~~~A~~~~~~m 504 (784)
...++.+.+.. +.+..+...+..+|...|++++|.+.+..+.+ .+...+.. ...++...+..+++.+.+.++
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999886 66778899999999999999999999988874 23332321 111223333344445566666
Q ss_pred HHCCC---CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcch---HHHHHHHHHhcCCHHHHHHHHHhC-CC
Q 044131 505 LHSGI---RPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEH---YACMVDILGRAGQLEKALEFIKGL-AV 577 (784)
Q Consensus 505 ~~~g~---~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~---~~~lv~~l~r~g~~~eA~~~~~~m-~~ 577 (784)
.+... +.+...+..+...+...|+.++|.+.+++..+. .|+... .....-.....++.+.+.+.+++. ..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 65421 137778888889999999999999999999854 455432 111112223357788888888765 23
Q ss_pred CCC-H--HHHHHHHHHHHhcCCHHHHHHHHH--HHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 578 EPG-P--AVWGALLGACMIHKDTNLARVASE--KLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 578 ~p~-~--~~~~~ll~a~~~~g~~~~a~~~~~--~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
.|+ + ....++.+.|...|++++|...++ ..++..|++.. +..++.++.+.|+.++|.+++++-
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 443 3 677899999999999999999999 57788887654 669999999999999999998764
No 49
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=7.3e-10 Score=110.92 Aligned_cols=197 Identities=17% Similarity=0.110 Sum_probs=164.9
Q ss_pred chhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044131 446 NIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522 (784)
Q Consensus 446 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 522 (784)
....+..+...|.+.|++++|...|++..+ .+...|..+...|...|++++|++.|++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 456677788899999999999999987652 356788889999999999999999999998864 3455677788888
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLA 600 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a 600 (784)
+...|++++|.++|+...+..........+..+...+.+.|++++|.+.+++. ...| +...|..+...+...|+++.|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998753222223556778889999999999999999876 3344 456888899999999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 601 RVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 601 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...++++++..|+++..+..++.++...|++++|....+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999998888999999999999999999998887754
No 50
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.28 E-value=2.1e-11 Score=125.92 Aligned_cols=189 Identities=17% Similarity=0.127 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC--CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhh
Q 044131 348 VLTALSTVYSRLNEMEAARKLFDESS--EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASK-VAPNPVTVSSILSACAQ 424 (784)
Q Consensus 348 ~~~~Li~~y~~~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~ 424 (784)
.+..++.. ...+++++|.+++...- .++...|..++..+.+.++++++.+++.+..... .+++...|......+.+
T Consensus 80 ~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~ 158 (280)
T PF13429_consen 80 DYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ 158 (280)
T ss_dssp ---------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred cccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 34444444 45566666666555432 2344555666666666677777776666655432 23344555555555666
Q ss_pred hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044131 425 LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLF 501 (784)
Q Consensus 425 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (784)
.|+.++|...++.+++.. |.|..+.+.++.++...|+.+++.+++.... ..|...|..+..+|...|+.++|+..|
T Consensus 159 ~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~ 237 (280)
T PF13429_consen 159 LGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYL 237 (280)
T ss_dssp CCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccc
Confidence 666666666666666653 3345566666666666666666555554433 234455666666666666666666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 044131 502 SEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSM 539 (784)
Q Consensus 502 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 539 (784)
++..... +.|..+...+..++...|+.++|.++.+..
T Consensus 238 ~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 238 EKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHS-TT-HHHHHHHHHHHT---------------
T ss_pred ccccccc-cccccccccccccccccccccccccccccc
Confidence 6665531 234555555666666666666666655544
No 51
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=5.2e-08 Score=99.42 Aligned_cols=190 Identities=10% Similarity=0.089 Sum_probs=99.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHH
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN-PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMY 457 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 457 (784)
|...+..-|.-.++.++|...|++..+. .|. ...++.+..-|....+...|.+-++.+++-. +.|-..|-.|..+|
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaY 408 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAY 408 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHH
Confidence 3334444455555556666666655543 232 2334444445555555556666666555543 44555555666666
Q ss_pred HhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 044131 458 AKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDE 534 (784)
Q Consensus 458 ~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 534 (784)
.-.+...-|+-.|++.. ..|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|...+.+.++.++|..
T Consensus 409 eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 409 EIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 66666666666665544 2355566666666666666666666666665544 3344556666666666666666666
Q ss_pred HHHHhHHhc---C-CCC-CcchHHHHHHHHHhcCCHHHHHHHH
Q 044131 535 IFQSMIHDH---G-FKP-LAEHYACMVDILGRAGQLEKALEFI 572 (784)
Q Consensus 535 ~~~~m~~~~---~-~~p-~~~~~~~lv~~l~r~g~~~eA~~~~ 572 (784)
+|..-++.. | +.| ......-|..-+-+.+++++|....
T Consensus 488 ~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 488 YYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred HHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 665554322 1 122 1222222344445555555555443
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2.7e-08 Score=104.06 Aligned_cols=253 Identities=12% Similarity=0.070 Sum_probs=179.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCH
Q 044131 384 IAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNI 463 (784)
Q Consensus 384 i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 463 (784)
..-+...+++.+.++++....+.. ++....+..-|..+..+|+..+-..+-..+++. .|..+.+|-++.--|.-.|+.
T Consensus 251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCc
Confidence 334445566666666666665432 333333333344445555544444443444443 355677777888788888999
Q ss_pred HHHHHHHhhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 464 VEARELFDLMSHKS---EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 464 ~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
.+|++.|.+...-| ...|-.....|+-.|..++|+..+...-+. ++-...-+.-+..-|...++.+.|.++|.+..
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ 407 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL 407 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999998776433 458999999999999999999988877663 22233334455566888899999999999776
Q ss_pred HhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-----C---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 044131 541 HDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-----V---EP-GPAVWGALLGACMIHKDTNLARVASEKLFEL 610 (784)
Q Consensus 541 ~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-----~---~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l 610 (784)
++.|+ +...+-+.-..-..+.+.+|..+|+... . .+ -..+|+.|..+|++.+.+++|+..+++++.+
T Consensus 408 ---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 408 ---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 67775 4455555555556788888888887642 1 11 2346888889999999999999999999999
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 611 DPENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 611 ~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
.|.++.+|..++-+|...|+.+.|...+.+-.
T Consensus 485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL 516 (611)
T KOG1173|consen 485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL 516 (611)
T ss_pred CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999887643
No 53
>PF13041 PPR_2: PPR repeat family
Probab=99.21 E-value=4.1e-11 Score=87.05 Aligned_cols=50 Identities=40% Similarity=0.582 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044131 476 KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSH 525 (784)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 525 (784)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
No 54
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=6e-11 Score=86.16 Aligned_cols=50 Identities=28% Similarity=0.598 Sum_probs=48.1
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 044131 375 KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQ 424 (784)
Q Consensus 375 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 424 (784)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999999999999874
No 55
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.17 E-value=7.2e-08 Score=97.10 Aligned_cols=288 Identities=12% Similarity=0.078 Sum_probs=171.1
Q ss_pred HHHHHHh--CCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Q 044131 282 MISGYTC--NGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRL 359 (784)
Q Consensus 282 li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~ 359 (784)
+..|..+ .|++.+|.++..+-.+.+-.| ...|.....+....|+.+.+......+.+..-.++..+.-+........
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~ 166 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR 166 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC
Confidence 4444443 588888888888866665444 2345555667777788888888888877775567777777888888888
Q ss_pred CCHHHHHHHHhh---cCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhhhCchH
Q 044131 360 NEMEAARKLFDE---SSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNP-------VTVSSILSACAQLGAIS 429 (784)
Q Consensus 360 g~~~~A~~~f~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~~~~~~~~ 429 (784)
|+.+.|+.-.++ |..++.........+|.+.|++.+.+.+..+|.+.|+--|+ .++..++.-+...+..+
T Consensus 167 ~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 167 RDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 888888776665 44567778888888888888888888888888888765554 34444554444444444
Q ss_pred HHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 044131 430 LGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGI 509 (784)
Q Consensus 430 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 509 (784)
.-++.++..-+. ...++.+..+++.-+..| |+.++|.++.++..+.+.
T Consensus 247 gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l-------------------------------~~~~~A~~~i~~~Lk~~~ 294 (400)
T COG3071 247 GLKTWWKNQPRK-LRNDPELVVAYAERLIRL-------------------------------GDHDEAQEIIEDALKRQW 294 (400)
T ss_pred HHHHHHHhccHH-hhcChhHHHHHHHHHHHc-------------------------------CChHHHHHHHHHHHHhcc
Confidence 433333333221 122333444444444444 455555555555444444
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 044131 510 RPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPAVWGALL 588 (784)
Q Consensus 510 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll 588 (784)
.|+ ...+-.+...++.+.-.+..+...+.++-.| ..+..|..+|.+.+.+.+|.+.++.. +..|+...|.-+.
T Consensus 295 D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la 368 (400)
T COG3071 295 DPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELA 368 (400)
T ss_pred Chh----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHH
Confidence 444 1222234444554444444444444443333 34455555555555555555555543 3555555555555
Q ss_pred HHHHhcCCHHHHHHHHHHHh
Q 044131 589 GACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~ 608 (784)
.++-..|+.+.|.+..++.+
T Consensus 369 ~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 369 DALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHcCChHHHHHHHHHHH
Confidence 56656666666655555544
No 56
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=4.8e-08 Score=95.34 Aligned_cols=312 Identities=14% Similarity=0.140 Sum_probs=170.3
Q ss_pred hCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhC-CCc--chHHHHHHHHHHHhcCCHHH
Q 044131 288 CNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSG-IVS--NSSVLTALSTVYSRLNEMEA 364 (784)
Q Consensus 288 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g-~~~--~~~~~~~Li~~y~~~g~~~~ 364 (784)
-+.++++|+++|-+|.+.. +-+..+-.++-+.+-+.|..+.|..+|.-+.++. +.. -......|..=|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4578999999999998741 1122223344445555666666666666555442 111 12233344455555555555
Q ss_pred HHHHHhhcCCCCh---hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHc
Q 044131 365 ARKLFDESSEKSL---ASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSR 441 (784)
Q Consensus 365 A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~ 441 (784)
|+.+|..+.+.+. .....|+..|-+..++++|++.-+++.+.+-++..+-.
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI-------------------------- 179 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI-------------------------- 179 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------------------------
Confidence 5555555444222 23333455555555555555555555444333222111
Q ss_pred CCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 044131 442 NFESNIYVSTALIDMYAKCGNIVEARELFDLMSHK---SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLS 518 (784)
Q Consensus 442 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ 518 (784)
...|.-|...+....+.+.|..++.+..+. .+..--.+...+...|++..|++.++...+++..--..+...
T Consensus 180 -----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~ 254 (389)
T COG2956 180 -----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEM 254 (389)
T ss_pred -----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 122334444445556666666666665532 222333344556777888888888888887643333345666
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCH
Q 044131 519 VLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFI-KGLAVEPGPAVWGALLGACMIHKDT 597 (784)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~-~~m~~~p~~~~~~~ll~a~~~~g~~ 597 (784)
|..+|.+.|+.+++..++..+.+. .+..+.-..+.+......-.++|...+ +...-+|+...+..|+..-..
T Consensus 255 L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~---- 327 (389)
T COG2956 255 LYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLA---- 327 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhc----
Confidence 777888888888888888777643 344444444444444444444444443 233445665555555443111
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEE
Q 044131 598 NLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFT 665 (784)
Q Consensus 598 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~ 665 (784)
-+.-|+|.+...+.+.|....++..|.+--..-+=+.|.|.
T Consensus 328 ---------------------------daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CGF~a~~l~ 368 (389)
T COG2956 328 ---------------------------DAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCGFTAHTLY 368 (389)
T ss_pred ---------------------------cccccchhhhHHHHHHHHHHHHhhcCCceecccCCcceeee
Confidence 12235577777777888777777777666555555556664
No 57
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.16 E-value=2e-05 Score=84.10 Aligned_cols=439 Identities=13% Similarity=0.172 Sum_probs=226.2
Q ss_pred HHHHhhCCCChhHHHHHhcc----CCC-CCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcC
Q 044131 47 LAHRLSDFKATCYARALFFS----IPK-PDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASAC 121 (784)
Q Consensus 47 l~~~y~~~g~~~~A~~~f~~----~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 121 (784)
-+....+.|++..-+++|+. ||. .....|...+.-..+.|-++-++. ++++..+ +.|. .-.--+.-+...
T Consensus 108 Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~r-vyrRYLk--~~P~--~~eeyie~L~~~ 182 (835)
T KOG2047|consen 108 YLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIR-VYRRYLK--VAPE--AREEYIEYLAKS 182 (835)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHH-HHHHHHh--cCHH--HHHHHHHHHHhc
Confidence 34444556777777777765 222 223456666666666777777777 6666654 2232 234445555566
Q ss_pred CCchHHHHHHHHHHHhC------CCCchhHHHHHHHHhhcCCChH---HHHHHhccCCCC--C--cccHHHHHHHHHcCC
Q 044131 122 CDRSIGVLLHGHAIVSG------YGSDLFVGAALVDLYFKFSWVK---SARKVFDKMPEK--D--TVLWNSMISGLMKNC 188 (784)
Q Consensus 122 ~~~~~a~~~~~~~~~~g------~~~d~~~~~~li~~y~~~g~~~---~A~~~f~~~~~~--~--~~~~~~li~~~~~~g 188 (784)
+++.+|.+.++.++... ...+-..|.-+-+..++.-+.- ....+++.+..+ | ...|++|..-|.+.|
T Consensus 183 d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g 262 (835)
T KOG2047|consen 183 DRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSG 262 (835)
T ss_pred cchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhh
Confidence 67777776666554221 1334445555555555443221 223334444332 2 346777777777777
Q ss_pred CchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHH
Q 044131 189 CFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLF 268 (784)
Q Consensus 189 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f 268 (784)
.+++|.++|++-.+. .....-|..+.++++.......+..+- .....+..+. ..-+++-...-|
T Consensus 263 ~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~e------------d~~dl~~~~a~~ 326 (835)
T KOG2047|consen 263 LFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEE------------DDVDLELHMARF 326 (835)
T ss_pred hhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChh------------hhhhHHHHHHHH
Confidence 777777777776543 234445566666665433322222111 0101111110 001223333334
Q ss_pred hcCCCC---------------CeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHH
Q 044131 269 RDIVRP---------------DLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCI 333 (784)
Q Consensus 269 ~~~~~~---------------d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 333 (784)
+.+..+ ++..|..-+. ...|+..+-...|.+.... +.|-..
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka--------------------- 382 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKA--------------------- 382 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccC---------------------
Confidence 333221 2223332222 2234444555555554432 222111
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh-------hHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 044131 334 HSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSL-------ASWNAMIAGYTQNGLTEEAISLFQEMQAS 406 (784)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (784)
...-...|..+.+.|-..|+++.|+.+|++...-+- ..|..-...=.+..+++.|+++.+.....
T Consensus 383 --------~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 383 --------VGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred --------CCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 111223556666677777777777777766543221 23444444444556666666665554321
Q ss_pred CC----------CC-------CHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHH
Q 044131 407 KV----------AP-------NPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEAREL 469 (784)
Q Consensus 407 g~----------~p-------d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 469 (784)
-- .| +...|+..+..--..|-++..+.+++.+++..+.....+.| ..-.+-...-++++.++
T Consensus 455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~ 533 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKA 533 (835)
T ss_pred CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHH
Confidence 10 11 11223333444445667778888888888766543332222 22233445567888888
Q ss_pred HhhcC----CCCHH-HHHHHHHHHHHc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HccCCHHHHHHHHHHh
Q 044131 470 FDLMS----HKSEV-TWNTMISGYGLH---GHGLEALQLFSEMLHSGIRPSGVTFLSVLYAC--SHAGLVREGDEIFQSM 539 (784)
Q Consensus 470 f~~~~----~~~~~-~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~--~~~g~~~~a~~~~~~m 539 (784)
+++-. -|++. .||.-+.-+.+. -..+.|..+|++.++ |.+|...-+.-|+.|- ..-|....|.+++++.
T Consensus 534 YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 534 YERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 87654 35554 788777665542 347788888888888 6777665544444432 2347777777777765
Q ss_pred H
Q 044131 540 I 540 (784)
Q Consensus 540 ~ 540 (784)
.
T Consensus 613 t 613 (835)
T KOG2047|consen 613 T 613 (835)
T ss_pred H
Confidence 4
No 58
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.14 E-value=1.7e-08 Score=108.94 Aligned_cols=231 Identities=17% Similarity=0.136 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHhhhCchHHHHHHHHHHHHc-----CC-CCch-hhHhHHHHHHHhcCCHHHHHHHHhhcCC---------
Q 044131 412 PVTVSSILSACAQLGAISLGKWVHELVKSR-----NF-ESNI-YVSTALIDMYAKCGNIVEARELFDLMSH--------- 475 (784)
Q Consensus 412 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-----g~-~~~~-~~~~~Li~~y~k~g~~~~A~~~f~~~~~--------- 475 (784)
..|...+...|...|+++.|.++++..++. |. .+.+ ...+.+..+|...+++++|..+|+++..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 356666888889999999999888887754 21 1222 2334577789999999999999887752
Q ss_pred -CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCC-CCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcC--
Q 044131 476 -KS-EVTWNTMISGYGLHGHGLEALQLFSEMLH-----SGIR-PSGV-TFLSVLYACSHAGLVREGDEIFQSMIHDHG-- 544 (784)
Q Consensus 476 -~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~-pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 544 (784)
|. ..+++.|...|...|++++|..++++..+ .|.. |... -++.+...|.+.+.+++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 22 34788888889999999998888887654 1222 2222 366677789999999999999998876654
Q ss_pred CCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-
Q 044131 545 FKPL----AEHYACMVDILGRAGQLEKALEFIKGLA---------VEPG-PAVWGALLGACMIHKDTNLARVASEKLFE- 609 (784)
Q Consensus 545 ~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m~---------~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~- 609 (784)
+.++ ..+++.|..+|-..|+++||++++++.- ..+. ....+.|..+|...++.+.|.+.+++...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 4679999999999999999999998761 1232 44677888999999999989988887664
Q ss_pred ---CCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 610 ---LDPEN---VGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 610 ---l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
..|++ ...|..|+-+|.+.|++++|.++-....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34444 4578889999999999999999987654
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.3e-07 Score=92.23 Aligned_cols=274 Identities=11% Similarity=0.018 Sum_probs=202.6
Q ss_pred HHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHH---HHHHHhCCChhHHHHHHHHHHhCCCCCCHHH
Q 044131 338 LKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAM---IAGYTQNGLTEEAISLFQEMQASKVAPNPVT 414 (784)
Q Consensus 338 ~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t 414 (784)
.+.-++.|+....++.+.|...|+.++|...|++...-|+.+...| .-.+.+.|+.+....+...+.... +-....
T Consensus 224 ~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~ 302 (564)
T KOG1174|consen 224 DNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASH 302 (564)
T ss_pred hhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhh
Confidence 3456788999999999999999999999999998766555443333 233567888888888877776532 112222
Q ss_pred HHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC--C-CCHHHHHHHHHHHHHc
Q 044131 415 VSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS--H-KSEVTWNTMISGYGLH 491 (784)
Q Consensus 415 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~ 491 (784)
|..-+...-...+++.|..+-+..++.. +.+...+-.-...+...|+.++|.-.|.... . -+..+|..|+..|...
T Consensus 303 wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~ 381 (564)
T KOG1174|consen 303 WFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQ 381 (564)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhh
Confidence 2222233345567777777777777654 2333334333456778899999999998765 3 4788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHc-cCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHH
Q 044131 492 GHGLEALQLFSEMLHSGIRPSGVTFLSVL-YACSH-AGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKA 568 (784)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll-~a~~~-~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA 568 (784)
|+..||.-+-+..... ++.+..+.+.+. ..|.- ...-++|.+++++-. .+.|+ ....+.+..++.+.|+.+++
T Consensus 382 ~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~ 457 (564)
T KOG1174|consen 382 KRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDI 457 (564)
T ss_pred chHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchH
Confidence 9999999888766553 344555555442 33332 334678999998766 67888 56777888999999999999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch
Q 044131 569 LEFIKGL-AVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGY 617 (784)
Q Consensus 569 ~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 617 (784)
..++++. ...||....+.|....+..+.+..|...|..++.++|++-..
T Consensus 458 i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~s 507 (564)
T KOG1174|consen 458 IKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRT 507 (564)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHH
Confidence 9999886 478999999999999999999999999999999999997543
No 60
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.12 E-value=2.2e-07 Score=99.16 Aligned_cols=165 Identities=15% Similarity=0.100 Sum_probs=81.7
Q ss_pred HhcCCCchHHHHHHHHHHH-------hCC-CCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCC
Q 044131 118 ASACCDRSIGVLLHGHAIV-------SGY-GSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCC 189 (784)
Q Consensus 118 ~~~~~~~~~a~~~~~~~~~-------~g~-~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 189 (784)
++..|++..++.+|+-..- .|- ..|-+-..+++.+..| .+.+|+.+|-+-. + -..-|..|....+
T Consensus 500 faai~dvak~r~lhd~~eiadeas~~~ggdgt~fykvra~lail~k--kfk~ae~ifleqn--~---te~aigmy~~lhk 572 (1636)
T KOG3616|consen 500 FAAIGDVAKARFLHDILEIADEASIEIGGDGTDFYKVRAMLAILEK--KFKEAEMIFLEQN--A---TEEAIGMYQELHK 572 (1636)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchHHHHHHHHHHHHh--hhhHHHHHHHhcc--c---HHHHHHHHHHHHh
Confidence 3445566666666654431 222 2333444555555543 5777887775421 1 1234566666667
Q ss_pred chHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 044131 190 FQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFR 269 (784)
Q Consensus 190 ~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 269 (784)
+++|+.+-+.. |.+.=...-.+-+.++...|+-+.|-++ ..+.--.-+-|..|.|.|.+-.|.+.-.
T Consensus 573 wde~i~lae~~----~~p~~eklk~sy~q~l~dt~qd~ka~el---------k~sdgd~laaiqlyika~~p~~a~~~a~ 639 (1636)
T KOG3616|consen 573 WDEAIALAEAK----GHPALEKLKRSYLQALMDTGQDEKAAEL---------KESDGDGLAAIQLYIKAGKPAKAARAAL 639 (1636)
T ss_pred HHHHHHHHHhc----CChHHHHHHHHHHHHHHhcCchhhhhhh---------ccccCccHHHHHHHHHcCCchHHHHhhc
Confidence 77777665432 2211111223334444444444433322 1122223455677777777776665432
Q ss_pred c--CCCCCeeeHHHHHHHHHhCCCchHHHHHHHHH
Q 044131 270 D--IVRPDLISCNAMISGYTCNGKTESSLRLFRQL 302 (784)
Q Consensus 270 ~--~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m 302 (784)
. ....|......+..++.+...+++|-.+|+++
T Consensus 640 n~~~l~~de~il~~ia~alik~elydkagdlfeki 674 (1636)
T KOG3616|consen 640 NDEELLADEEILEHIAAALIKGELYDKAGDLFEKI 674 (1636)
T ss_pred CHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHh
Confidence 1 12234444444555555555566666666555
No 61
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=1.6e-05 Score=88.52 Aligned_cols=154 Identities=15% Similarity=0.162 Sum_probs=125.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHH
Q 044131 477 SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMV 556 (784)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv 556 (784)
....|..+..+-.+.|...+|++-|-+. -|+..|..++.++++.|.+++-..++....++ .-+|.++ +.|+
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence 3457999999999999999999887643 46778999999999999999999999877644 5566654 5689
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 044131 557 DILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAAT 636 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 636 (784)
-+|++.+++.|-++++. .||..-......-|...|.++.|+.+|.. .+.|..|+..+...|.+..|..
T Consensus 1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999885 68888888999999999999999988865 4678889999999999998887
Q ss_pred HHHHHHhCCCccCCc
Q 044131 637 VRQVVKKRKLAKAPG 651 (784)
Q Consensus 637 ~~~~m~~~~~~k~~g 651 (784)
--++......-|+.+
T Consensus 1242 ~aRKAns~ktWK~Vc 1256 (1666)
T KOG0985|consen 1242 AARKANSTKTWKEVC 1256 (1666)
T ss_pred HhhhccchhHHHHHH
Confidence 766554433333333
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.11 E-value=1.9e-08 Score=113.89 Aligned_cols=243 Identities=14% Similarity=0.048 Sum_probs=178.9
Q ss_pred ChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHh---------hhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcC
Q 044131 392 LTEEAISLFQEMQASKVAPNPV-TVSSILSACA---------QLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCG 461 (784)
Q Consensus 392 ~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~---------~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g 461 (784)
..++|+.+|++.... .|+.. .+..+..++. ..++.++|...++.+++.. +.+...+..+...+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 457888889888764 56543 3433333332 2244788999999988875 557788888889999999
Q ss_pred CHHHHHHHHhhcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHH
Q 044131 462 NIVEARELFDLMS--HK-SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV-TFLSVLYACSHAGLVREGDEIFQ 537 (784)
Q Consensus 462 ~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~ 537 (784)
++++|...|++.. .| +...|..+...+...|++++|+..+++..+. .|+.. .+..++.++...|++++|...++
T Consensus 353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 9999999999876 34 4668888999999999999999999999984 55533 33344555667899999999999
Q ss_pred HhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 538 SMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPA-VWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 538 ~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
+..+. ..|+ ...+..+...|...|++++|...++++ +..|+.. .++.|...+...| +.+...++++++..-..
T Consensus 431 ~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~ 506 (553)
T PRK12370 431 ELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRI 506 (553)
T ss_pred HHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHh
Confidence 88743 2354 555777888999999999999999886 4556544 4555555666666 47888788877654333
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 615 VGYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 615 ~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
+.....+..+|+-.|+-+.+..+ +.+.+.
T Consensus 507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred hcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 33444588899999999988888 555543
No 63
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.11 E-value=8.7e-06 Score=86.71 Aligned_cols=522 Identities=10% Similarity=0.104 Sum_probs=304.7
Q ss_pred hhHHHHHhccCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHH-hhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHH
Q 044131 57 TCYARALFFSIPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLR-KNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAI 135 (784)
Q Consensus 57 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m-~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 135 (784)
++.+.....+||. .|-..+.-+.++|+...... .|.+. +..-+.-....|...|+-....+-++.+..++.+-+
T Consensus 91 ~er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~-tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL 165 (835)
T KOG2047|consen 91 FERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRR-TFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL 165 (835)
T ss_pred HHHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHH-HHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH
Confidence 4555555666653 57777777778888877777 55543 333444555678888888888888888888888877
Q ss_pred HhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcc----------cHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 044131 136 VSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTV----------LWNSMISGLMKNCCFQDSIWVFGDMVRNGG 205 (784)
Q Consensus 136 ~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~----------~~~~li~~~~~~g~~~~A~~l~~~m~~~~g 205 (784)
+.. +...+-.|..+++.+++++|.+.+......|.. .|+-+-.-.+++-+.-..+
T Consensus 166 k~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~sl----------- 230 (835)
T KOG2047|consen 166 KVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSL----------- 230 (835)
T ss_pred hcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhccc-----------
Confidence 653 233566777788888888888888877654332 2333222222221111100
Q ss_pred CCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCC--CCc--hhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCeeeH
Q 044131 206 TWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGF--HDH--VYVLTGLVSFYSKCGEVERAELLFRDIVR--PDLISC 279 (784)
Q Consensus 206 ~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~--~~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~d~~~~ 279 (784)
+ .+.+++.|+ -+| -+.|++|.+-|.+.|.++.|+.+|++... -.+.-+
T Consensus 231 -------------------------n-vdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDF 284 (835)
T KOG2047|consen 231 -------------------------N-VDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDF 284 (835)
T ss_pred -------------------------C-HHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhH
Confidence 0 011222222 122 35788999999999999999999987644 334446
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHH--HcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHH-----------hCCCcch
Q 044131 280 NAMISGYTCNGKTESSLRLFRQLL--ASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLK-----------SGIVSNS 346 (784)
Q Consensus 280 ~~li~~~~~~g~~~~A~~l~~~m~--~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~-----------~g~~~~~ 346 (784)
+.+-.+|++-....-+..+ ++. ..|-+-+...+. ....-++.+.. ..-+.++
T Consensus 285 t~ifd~Ya~FEE~~~~~~m--e~a~~~~~n~ed~~dl~-------------~~~a~~e~lm~rr~~~lNsVlLRQn~~nV 349 (835)
T KOG2047|consen 285 TQIFDAYAQFEESCVAAKM--ELADEESGNEEDDVDLE-------------LHMARFESLMNRRPLLLNSVLLRQNPHNV 349 (835)
T ss_pred HHHHHHHHHHHHHHHHHHH--hhhhhcccChhhhhhHH-------------HHHHHHHHHHhccchHHHHHHHhcCCccH
Confidence 6666666543211111100 010 011111111111 11111111111 1112333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhh-------cCCC--ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC---HHH
Q 044131 347 SVLTALSTVYSRLNEMEAARKLFDE-------SSEK--SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN---PVT 414 (784)
Q Consensus 347 ~~~~~Li~~y~~~g~~~~A~~~f~~-------~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd---~~t 414 (784)
..|..-+..| .|+..+-...|.+ .... -...|..+..-|-.+|+.+.|..+|.+...-..+-- ..+
T Consensus 350 ~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~v 427 (835)
T KOG2047|consen 350 EEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEV 427 (835)
T ss_pred HHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHH
Confidence 4444444333 2334444444433 2221 123699999999999999999999999876433221 123
Q ss_pred HHHHHHHHhhhCchHHHHHHHHHHHHc-----------CCCC------chhhHhHHHHHHHhcCCHHHHHHHHhhcCCCC
Q 044131 415 VSSILSACAQLGAISLGKWVHELVKSR-----------NFES------NIYVSTALIDMYAKCGNIVEARELFDLMSHKS 477 (784)
Q Consensus 415 ~~~ll~a~~~~~~~~~a~~i~~~~~~~-----------g~~~------~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~ 477 (784)
|......=.+..+++.|..+.+.+... +.++ +..+|+.++|.--.+|-++....+++++.+--
T Consensus 428 w~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 428 WCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 333333333456777777777665421 1111 23456666777778899999999999887422
Q ss_pred HHHHHHH---HHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCc-
Q 044131 478 EVTWNTM---ISGYGLHGHGLEALQLFSEMLHSGIRPSGV----TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLA- 549 (784)
Q Consensus 478 ~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~- 549 (784)
+.|=..+ ..-+-.|..++++.++|++-+..=-.|+.. ||....-.=...-.++.|+.+|++.++ +.+|..
T Consensus 508 iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~a 585 (835)
T KOG2047|consen 508 IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHA 585 (835)
T ss_pred cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHH
Confidence 2211111 112345777899999998877654455553 343333332234479999999999986 666652
Q ss_pred -chHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCH--HHHHHHHHHHH-hcCCHHHHHHHHHHHhcCCCCCcch--HHHH
Q 044131 550 -EHYACMVDILGRAGQLEKALEFIKGLA--VEPGP--AVWGALLGACM-IHKDTNLARVASEKLFELDPENVGY--HVLL 621 (784)
Q Consensus 550 -~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~--~~~~~ll~a~~-~~g~~~~a~~~~~~~~~l~p~~~~~--~~~l 621 (784)
..|-....+=-+.|....|+.++++.. +++.. ..|+..+.-.. ..| +.....+|+++++.-|++-.- -.-.
T Consensus 586 KtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yG-v~~TR~iYekaIe~Lp~~~~r~mclrF 664 (835)
T KOG2047|consen 586 KTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEKAIESLPDSKAREMCLRF 664 (835)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHhCChHHHHHHHHHH
Confidence 233333444457789999999999974 44432 27877776333 333 445678899999988876543 3446
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 044131 622 SNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 622 ~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
+.+-.+.|..+.|..++..-.+-
T Consensus 665 AdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 665 ADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HHHhhhhhhHHHHHHHHHhhhhc
Confidence 88888999999999998766553
No 64
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.08 E-value=8.8e-07 Score=87.38 Aligned_cols=446 Identities=13% Similarity=0.052 Sum_probs=228.7
Q ss_pred hcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHH
Q 044131 119 SACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCCFQDSIW 195 (784)
Q Consensus 119 ~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 195 (784)
....|+..|..+++.-...+-+....+--=+...|.+.|++++|..++.-+.+ ++...|-.|.-++.--|.+.+|..
T Consensus 33 ls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 33 LSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred HhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHH
Confidence 34455666666655544332211111212223345567888888877766553 345556666666666677777766
Q ss_pred HHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--
Q 044131 196 VFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR-- 273 (784)
Q Consensus 196 l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~-- 273 (784)
+-... .-++-.-..++...-+.++-+.-.++|+.+.. ...-.-+|.++.-..-.+.+|..++.++..
T Consensus 113 ~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 113 IAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 64432 12233334455555566776666666665532 223344555555555578888888888754
Q ss_pred CCeeeHHH-HHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCC--CChhHHHHHHHHHHHhCCCcchHHHH
Q 044131 274 PDLISCNA-MISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPF--GHLHLTNCIHSFCLKSGIVSNSSVLT 350 (784)
Q Consensus 274 ~d~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~i~~~~~~~g~~~~~~~~~ 350 (784)
|+-...|. |.-.|.+...++-+.++++--++. -||+ |+..=+.+|... =+-..+.+-...+.+.+-..-++.--
T Consensus 182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdS-tiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~ 258 (557)
T KOG3785|consen 182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDS-TIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEY 258 (557)
T ss_pred hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCc-HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHH
Confidence 44455554 344677778888887777776654 2332 333334444321 11112222222222221111000000
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-----hh
Q 044131 351 ALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACA-----QL 425 (784)
Q Consensus 351 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-----~~ 425 (784)
.+=+-..-...-+.|.+++-.+...=+.+--.|+--|.+.++..+|..+.+++.. ..|-.+..-.+..+-. ..
T Consensus 259 l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSr 336 (557)
T KOG3785|consen 259 LCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSR 336 (557)
T ss_pred HHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcH
Confidence 0000000011223344443332221122233345557777888888777766532 2333333222222111 11
Q ss_pred CchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044131 426 GAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEML 505 (784)
Q Consensus 426 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (784)
..+.-|.+.+..+-.++...|... --.+|.+.+--..++++.+-++....
T Consensus 337 eHlKiAqqffqlVG~Sa~ecDTIp------------------------------GRQsmAs~fFL~~qFddVl~YlnSi~ 386 (557)
T KOG3785|consen 337 EHLKIAQQFFQLVGESALECDTIP------------------------------GRQSMASYFFLSFQFDDVLTYLNSIE 386 (557)
T ss_pred HHHHHHHHHHHHhccccccccccc------------------------------chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123334444444444433333221 22334444444455666666665555
Q ss_pred HCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHH-HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHH
Q 044131 506 HSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYA-CMVDILGRAGQLEKALEFIKGLAVEPGPAVW 584 (784)
Q Consensus 506 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~ 584 (784)
.- +..|.+--..+..|.+..|.+.+|.++|-.+... .++ +..+|. .+...|.+.++.+-|++++-++.-+.+..+.
T Consensus 387 sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~-~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsL 463 (557)
T KOG3785|consen 387 SY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP-EIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSL 463 (557)
T ss_pred HH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh-hhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHH
Confidence 43 2233333335667777788888888887766411 222 233443 4556778888888888888777644444444
Q ss_pred HHH-HHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 585 GAL-LGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 585 ~~l-l~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
-.| ..-|.+.+.+--|-.++..+-.++|.
T Consensus 464 LqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 464 LQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 443 45788888888888888888888886
No 65
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.06 E-value=2.1e-07 Score=93.88 Aligned_cols=290 Identities=12% Similarity=0.020 Sum_probs=194.2
Q ss_pred CCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHH
Q 044131 187 NCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAEL 266 (784)
Q Consensus 187 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~ 266 (784)
.|++.+|..+..+-.+. +-.| ...|.....+.-..|+.+.+-.++..+.+.--.++..+.-+........|+.+.|+.
T Consensus 97 eG~~~qAEkl~~rnae~-~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEH-GEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhc-Ccch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 45555555555554333 2111 123344444555566666666666666665445666677777777788888888877
Q ss_pred HHhcC---CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCC
Q 044131 267 LFRDI---VRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIV 343 (784)
Q Consensus 267 ~f~~~---~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~ 343 (784)
-.+++ ..++..........|.+.|++.+.+.+...|.+.|+--|+..- .
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~----------------------------~ 226 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAA----------------------------R 226 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHH----------------------------H
Confidence 66554 4466777888888999999999999999999888765443210 0
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044131 344 SNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILS 420 (784)
Q Consensus 344 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 420 (784)
....+++.+++-....+..+.-...++..+. .++..-.+++.-+.+.|+.++|.++..+..+.+..|+..+ +-
T Consensus 227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~ 302 (400)
T COG3071 227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LI 302 (400)
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HH
Confidence 1123445555555555555555566666663 2566667778888899999999999999888877777222 23
Q ss_pred HHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCHHHHH
Q 044131 421 ACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS--HKSEVTWNTMISGYGLHGHGLEAL 498 (784)
Q Consensus 421 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~ 498 (784)
.+.+.++.+.-.+..+...+.. +.++..+.+|...|.|.+.+.+|...|+... .++..+|+-+..+|.+.|+..+|.
T Consensus 303 ~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~ 381 (400)
T COG3071 303 PRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE 381 (400)
T ss_pred hhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence 4556666666666666655442 4455778888888888888888888888665 578888888888888888888888
Q ss_pred HHHHHHHHCCCCC
Q 044131 499 QLFSEMLHSGIRP 511 (784)
Q Consensus 499 ~~~~~m~~~g~~p 511 (784)
+.+++....-.+|
T Consensus 382 ~~r~e~L~~~~~~ 394 (400)
T COG3071 382 QVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHhcCC
Confidence 8887766433333
No 66
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=1.3e-07 Score=92.33 Aligned_cols=286 Identities=13% Similarity=0.092 Sum_probs=167.8
Q ss_pred CCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcCChHH
Q 044131 187 NCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHD---HVYVLTGLVSFYSKCGEVER 263 (784)
Q Consensus 187 ~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~y~~~g~~~~ 263 (784)
+.++++|+++|-+|.+. -+-+..+-.++-+.+.+.|..+.|..+|..++++---+ -....-.|..=|...|-+|.
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 46889999999999864 22223344567777888899999999999887642111 12344566777899999999
Q ss_pred HHHHHhcCCCCCee---eHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhh----HHhHHHhhcCCCChhHHHHHHHH
Q 044131 264 AELLFRDIVRPDLI---SCNAMISGYTCNGKTESSLRLFRQLLASAERVNSST----IVGLIPVFYPFGHLHLTNCIHSF 336 (784)
Q Consensus 264 A~~~f~~~~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~i~~~ 336 (784)
|+.+|..+.+.+.. ..-.|+..|-+..+|++|++.-+++...+-++..+- |.-+........+.+.|...+..
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999988774444 345578899999999999999999888765554332 22223333333444444444444
Q ss_pred HHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 044131 337 CLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVS 416 (784)
Q Consensus 337 ~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 416 (784)
..+.. +..+...-.+. ..+...|+++.|.+.++...+.+..--+.+..
T Consensus 206 Alqa~-~~cvRAsi~lG-------------------------------~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~ 253 (389)
T COG2956 206 ALQAD-KKCVRASIILG-------------------------------RVELAKGDYQKAVEALERVLEQNPEYLSEVLE 253 (389)
T ss_pred HHhhC-ccceehhhhhh-------------------------------HHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence 43332 11222222333 34455555555555555555543333334445
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhh-cC-CCCHHHHHHHHHHHH---Hc
Q 044131 417 SILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDL-MS-HKSEVTWNTMISGYG---LH 491 (784)
Q Consensus 417 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~-~~-~~~~~~~~~li~~~~---~~ 491 (784)
.+..+|..+|+.+.+...+..+.+....+ ..-..+.+.-....-.+.|.....+ +. +|+...+..+|.... .-
T Consensus 254 ~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daee 331 (389)
T COG2956 254 MLYECYAQLGKPAEGLNFLRRAMETNTGA--DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEE 331 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHccCCc--cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccc
Confidence 55555666666666665555555443222 2222333333333334444444333 22 566666666666543 23
Q ss_pred CCHHHHHHHHHHHHHCC
Q 044131 492 GHGLEALQLFSEMLHSG 508 (784)
Q Consensus 492 g~~~~A~~~~~~m~~~g 508 (784)
|...+-+.+++.|..+.
T Consensus 332 g~~k~sL~~lr~mvge~ 348 (389)
T COG2956 332 GRAKESLDLLRDMVGEQ 348 (389)
T ss_pred cchhhhHHHHHHHHHHH
Confidence 55677777888887643
No 67
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=3.5e-07 Score=95.92 Aligned_cols=268 Identities=14% Similarity=0.119 Sum_probs=161.8
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCee---eHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHH
Q 044131 242 HDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLI---SCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLI 318 (784)
Q Consensus 242 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 318 (784)
.-++.+.....+-+..++++.+..++++.+.+.|+. .+..-|..+...|+..+-..+=.+|.+.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~------------- 307 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL------------- 307 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-------------
Confidence 334444444555555556666666666555443322 2333344555555554444444444332
Q ss_pred HhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCChhH
Q 044131 319 PVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKS---LASWNAMIAGYTQNGLTEE 395 (784)
Q Consensus 319 ~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~ 395 (784)
.+..+.+|-++.--|.-.|..++|++.|.+...-| ...|-.....|+-.|..++
T Consensus 308 -----------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQ 364 (611)
T KOG1173|consen 308 -----------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQ 364 (611)
T ss_pred -----------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHH
Confidence 35566777777777888899999999998755433 3589999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC
Q 044131 396 AISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH 475 (784)
Q Consensus 396 A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~ 475 (784)
|+..+...-+. ++-...-+.-+---|.+.++++.|.+++.++.... +.|+.+.+-+.-+....+.+.+|...|+....
T Consensus 365 AmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 365 AMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred HHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 99888776543 11111112223334677888888888888887653 66777887777777777788888887776541
Q ss_pred ------C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC
Q 044131 476 ------K----SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGF 545 (784)
Q Consensus 476 ------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 545 (784)
+ -..+|+.|..+|.+.+.+++|+..|++.+.. .+-|..|+.++.-.+...|+++.|.+.|.+.+ .+
T Consensus 443 ~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL---~l 518 (611)
T KOG1173|consen 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKAL---AL 518 (611)
T ss_pred HhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHH---hc
Confidence 0 1123455555556666666666666655553 13344555555555555555555555555544 44
Q ss_pred CCCcch
Q 044131 546 KPLAEH 551 (784)
Q Consensus 546 ~p~~~~ 551 (784)
.|+-..
T Consensus 519 ~p~n~~ 524 (611)
T KOG1173|consen 519 KPDNIF 524 (611)
T ss_pred CCccHH
Confidence 555433
No 68
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.04 E-value=3.8e-07 Score=101.17 Aligned_cols=552 Identities=13% Similarity=0.013 Sum_probs=263.9
Q ss_pred chhHHHHHHHHHHhCCCCC-hhhHhHHHHHhhCCCChhHHHHHhccC---CCCCcchHHHHHHHHhcCCCchhHHHHHHH
Q 044131 22 QSQLTQTHAQIIIHGFQND-LSTVTKLAHRLSDFKATCYARALFFSI---PKPDLFLFNVIIRGFSNNEMPKSSICFYTH 97 (784)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 97 (784)
-.....+|+.+....+.++ ...|..|-.-|...-+...|.+.|+.. ..-+..+|-....-|++..+++.|+.+.+.
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 3456678888877777666 456888888888877888899988864 456777889999999999999999983222
Q ss_pred HHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccH
Q 044131 98 LRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLW 177 (784)
Q Consensus 98 ~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~ 177 (784)
.-.......-..-|..+--.+...++...+..-++...+.. +.|...|..|..+|.++|+...|.++|++...-++.+|
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 22221111111122222222334455555555555555554 44677888888888888888888888877765444433
Q ss_pred HHH---HHHHHcCCCchHHHHHHHHHHHcC-----CCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHH
Q 044131 178 NSM---ISGLMKNCCFQDSIWVFGDMVRNG-----GTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLT 249 (784)
Q Consensus 178 ~~l---i~~~~~~g~~~~A~~l~~~m~~~~-----g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 249 (784)
-.- ...-+.+|.+.+|++.+....... +..--..++......+...|-...+..+++..++. ..+
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~-------f~~ 703 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES-------FIV 703 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH-------HHH
Confidence 221 123355788888888777665430 00000011111111111111112222222211110 011
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCCh--
Q 044131 250 GLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHL-- 327 (784)
Q Consensus 250 ~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~-- 327 (784)
+++... ..|...|-.+- .|..+|-+.... .|+......+..-.-..+..
T Consensus 704 ~l~h~~-----------------~~~~~~Wi~as----------dac~~f~q~e~~--~vn~h~l~il~~q~e~~~~l~~ 754 (1238)
T KOG1127|consen 704 SLIHSL-----------------QSDRLQWIVAS----------DACYIFSQEEPS--IVNMHYLIILSKQLEKTGALKK 754 (1238)
T ss_pred HHHHhh-----------------hhhHHHHHHHh----------HHHHHHHHhccc--chHHHHHHHHHHHHHhcccCcc
Confidence 111110 01111222111 112222222100 11211111111111111111
Q ss_pred -h---HHHHHHHHHHHhCCCcchHHHHHHHHHHHh----cC----CHHHHHHHHhhc---CCCChhHHHHHHHHHHhCCC
Q 044131 328 -H---LTNCIHSFCLKSGIVSNSSVLTALSTVYSR----LN----EMEAARKLFDES---SEKSLASWNAMIAGYTQNGL 392 (784)
Q Consensus 328 -~---~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~----~g----~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~ 392 (784)
+ .|-+.+.. ...+..+...|..|..-|.+ +| +...|...+..- ...+...||.|--. ...|.
T Consensus 755 ~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gn 831 (1238)
T KOG1127|consen 755 NDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGN 831 (1238)
T ss_pred hhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccch
Confidence 1 00000000 00111122233333322222 22 123444444432 23456667766544 44455
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhh
Q 044131 393 TEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDL 472 (784)
Q Consensus 393 ~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 472 (784)
+.-|..-|-+-... .+.+..+|..+--.|....+++.|.+.+....... +.+...+-...-.--..|+.-++..+|..
T Consensus 832 va~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 832 VACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 55555555444332 13345566666666666677777777776666442 22333232222223345666666666654
Q ss_pred c-----C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------CCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 044131 473 M-----S---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLH---------SGIRPSGVTFLSVLYACSHAGLVREGDEI 535 (784)
Q Consensus 473 ~-----~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---------~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 535 (784)
- . -++..-|-....-..++|+.++-+..-++.-. .|.+-+...|....+...|.+..+++.+.
T Consensus 910 s~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~el 989 (1238)
T KOG1127|consen 910 SDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALEL 989 (1238)
T ss_pred hHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHH
Confidence 1 1 14455555555555566665554443333221 12334455666666666777766666666
Q ss_pred HHHhHHhcCCCCCcchHHH----HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 044131 536 FQSMIHDHGFKPLAEHYAC----MVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 536 ~~~m~~~~~~~p~~~~~~~----lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~ 611 (784)
..+...-...+-+...|+. ...++...|.++.|..-+...+..-+..+-++-++. ...++++.+...+++++.+.
T Consensus 990 a~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis 1068 (1238)
T KOG1127|consen 990 ATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSIS 1068 (1238)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhc
Confidence 5554321112223334442 233444556666665555444434343333333333 34566777777777776655
Q ss_pred CCCcc
Q 044131 612 PENVG 616 (784)
Q Consensus 612 p~~~~ 616 (784)
-++..
T Consensus 1069 ~se~d 1073 (1238)
T KOG1127|consen 1069 NSESD 1073 (1238)
T ss_pred ccccc
Confidence 44433
No 69
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.03 E-value=1.6e-07 Score=101.42 Aligned_cols=237 Identities=16% Similarity=0.169 Sum_probs=148.9
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCCC----------Chh-HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH
Q 044131 345 NSSVLTALSTVYSRLNEMEAARKLFDESSEK----------SLA-SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPV 413 (784)
Q Consensus 345 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----------~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~ 413 (784)
-..+...|..+|...|+++.|..+|+...+. .+. .-+.+...|...+++++|..+|.++..-
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i------- 270 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI------- 270 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------
Confidence 3445555777777777777777777643211 111 1222334455555555555555554321
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC----------CCCHH-HHH
Q 044131 414 TVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS----------HKSEV-TWN 482 (784)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~----------~~~~~-~~~ 482 (784)
.....-...+.-..+++.|...|.+.|++++|...++... .+.+. ..+
T Consensus 271 ---------------------~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 271 ---------------------REEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred ---------------------HHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHH
Confidence 0000000001112334445556777777776666555433 12333 455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhc-----CCCCC-c
Q 044131 483 TMISGYGLHGHGLEALQLFSEMLHS---GIRPSG----VTFLSVLYACSHAGLVREGDEIFQSMIHDH-----GFKPL-A 549 (784)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~~---g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~ 549 (784)
.++..+...+++++|..++++..+. -+.++. -++..+...+.+.|++++|.++|++.++.. +..+. -
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 5666777888888888888866542 133343 368888889999999999999999886543 11222 4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 044131 550 EHYACMVDILGRAGQLEKALEFIKGL--------AVEPGPA-VWGALLGACMIHKDTNLARVASEKLFE 609 (784)
Q Consensus 550 ~~~~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~ 609 (784)
.+++.|...|.+.++.++|.++|.+. |-.|+.. +|..|..+|+..|+++.|+++.+++..
T Consensus 410 ~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 410 KPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 56788888899999999888888764 2445544 899999999999999999999998873
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=1.5e-08 Score=98.52 Aligned_cols=227 Identities=18% Similarity=0.151 Sum_probs=169.4
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhc
Q 044131 381 NAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKC 460 (784)
Q Consensus 381 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~ 460 (784)
+-|..+|.+.|.+.+|.+.|+.-... .|-..||..+-.+|-+..+++.|..++..-.+. ++.|+.........+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 45667788888888888888777765 455556666777777777777777777776654 345555555566667777
Q ss_pred CCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 044131 461 GNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQ 537 (784)
Q Consensus 461 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 537 (784)
++.++|.++++...+ .++.+..++..+|.-.++.+-|+.+|+++++.|+ -+...|+.+.-.|...+.+|-++.-|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 777777777776653 3455566666677777888888888888888774 355667777777777777777777666
Q ss_pred HhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 538 SMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPG--PAVWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 538 ~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
+.... | -.|+ ..+|..|.......||+..|.+.++-++..+|++.
T Consensus 383 RAlst--------------------------------a-t~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALST--------------------------------A-TQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHhh--------------------------------c-cCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 65421 1 1233 34788888888889999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 616 GYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 616 ~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
..++.|+-+-.+.|+.++|..+....++.
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999999999999999999999877653
No 71
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.01 E-value=1.5e-06 Score=94.61 Aligned_cols=446 Identities=16% Similarity=0.070 Sum_probs=226.6
Q ss_pred hCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhH
Q 044131 137 SGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSV 213 (784)
Q Consensus 137 ~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~ 213 (784)
..+.-|..+|..|.-+..++|+++.+-+.|++... .....|+.+-..|+-.|.-..|+.+.+.-.....-++|...+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34667899999999999999999999999998763 345679999999999999999999998876441223344455
Q ss_pred HhHHHHHhc-ccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC----CCCeeeHHHHHHHHHh
Q 044131 214 AAVLPAVAE-VQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIV----RPDLISCNAMISGYTC 288 (784)
Q Consensus 214 ~~ll~a~~~-~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~----~~d~~~~~~li~~~~~ 288 (784)
..+-+.|.. .+..++|..+-.+++... -.+++++...-..|..+. .....+|.- +
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~--------------~~~~~~l~~~~~l~lGi~y~~~A~~a~~~se------R 456 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLL--------------GGQRSHLKPRGYLFLGIAYGFQARQANLKSE------R 456 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHh--------------hhhhhhhhhhHHHHHHHHHHhHhhcCCChHH------H
Confidence 555555643 456666666655555421 112222222222222110 001111110 1
Q ss_pred CCCchHHHHHHHHHHHcC-CCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHH
Q 044131 289 NGKTESSLRLFRQLLASA-ERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARK 367 (784)
Q Consensus 289 ~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~ 367 (784)
.....++++.+++..+.+ -.|+..-|.++- ++-.++++.|.+.....++.+-..+...|..|.-.+...+++.+|..
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~ 534 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALD 534 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHH
Confidence 112345666666665543 234444343332 23345566666666666666555566666666666666666666666
Q ss_pred HHhhcCCCChhHHHHH---HHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCC
Q 044131 368 LFDESSEKSLASWNAM---IAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFE 444 (784)
Q Consensus 368 ~f~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~ 444 (784)
+.+...+.-..-++.| |..-..-++.++|+.....+..- --+...+...+. .|....-+.-...... ...
T Consensus 535 vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--we~~~~~q~~~~----~g~~~~lk~~l~la~~-q~~ 607 (799)
T KOG4162|consen 535 VVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--WEAEYGVQQTLD----EGKLLRLKAGLHLALS-QPT 607 (799)
T ss_pred HHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--HHhhhhHhhhhh----hhhhhhhhcccccCcc-ccc
Confidence 5554322111111111 11111234455555544444321 000000000000 0000000000000000 000
Q ss_pred CchhhHhHHHHHHH---hcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044131 445 SNIYVSTALIDMYA---KCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLY 521 (784)
Q Consensus 445 ~~~~~~~~Li~~y~---k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 521 (784)
..+.++..+..... +.-..+.....+...+.|+. +|... ...+.....
T Consensus 608 ~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~-~~~~~----------------------------~~lwllaa~ 658 (799)
T KOG4162|consen 608 DAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDS-LWYLL----------------------------QKLWLLAAD 658 (799)
T ss_pred ccchhhHHHHHHHHhhhhhcccccccCcccccCCCCc-hHHHH----------------------------HHHHHHHHH
Confidence 01111111111111 10011111111111111221 11111 112334445
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHH
Q 044131 522 ACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPA-VWGALLGACMIHKDTN 598 (784)
Q Consensus 522 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~ 598 (784)
.+...+..+++...+.+.. ++.|. ...|.-....+...|.++||.+.|... .+.|+.+ +..+|...+...|+..
T Consensus 659 ~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~ 735 (799)
T KOG4162|consen 659 LFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPR 735 (799)
T ss_pred HHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcc
Confidence 5666666666666555543 34443 445555556777777888887777654 4666543 7777777777777777
Q ss_pred HHHH--HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 599 LARV--ASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 599 ~a~~--~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.|+. +...+++++|.++..|..|+.++.+.|+.++|.+-|..--+
T Consensus 736 la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 736 LAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 7777 77888888888888888888888888888888887765543
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.01 E-value=4.2e-08 Score=111.10 Aligned_cols=210 Identities=12% Similarity=0.036 Sum_probs=162.7
Q ss_pred CchHHHHHHHHHHHHcCCCCchhhHhHHHHHHH---------hcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCC
Q 044131 426 GAISLGKWVHELVKSRNFESNIYVSTALIDMYA---------KCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGH 493 (784)
Q Consensus 426 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~---------k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 493 (784)
+++++|.+.++++++.. +.+...+..+...|. ..+++++|...+++..+ .+...|..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence 35678899999988764 334556666665554 23458899999998763 467789999889999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCc-chHHHHHHHHHhcCCHHHHHHH
Q 044131 494 GLEALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLA-EHYACMVDILGRAGQLEKALEF 571 (784)
Q Consensus 494 ~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~lv~~l~r~g~~~eA~~~ 571 (784)
+++|+..|++..+. .|+ ...+..+..++...|+.++|...++... .+.|+. ..+..+...+...|++++|.+.
T Consensus 354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 99999999999985 455 5567788889999999999999999987 446663 2333445556778999999999
Q ss_pred HHhCC--CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 572 IKGLA--VEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 572 ~~~m~--~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+++.. ..|+ +..+..+..++...|+.++|...++++....|++......|+..|...| ++|...++.+.+
T Consensus 429 ~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 98763 2454 4456777778888999999999999999899988888888888888888 477776665554
No 73
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=5.1e-06 Score=87.78 Aligned_cols=363 Identities=13% Similarity=0.140 Sum_probs=207.8
Q ss_pred HhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC-ChhhHHhHHHhhcCCCChhHHHHHH
Q 044131 256 SKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERV-NSSTIVGLIPVFYPFGHLHLTNCIH 334 (784)
Q Consensus 256 ~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~i~ 334 (784)
.+.+.+|+|...++.....|..+...-...+.+.|++++|+.+|+.+.+.+..- |...-..++.+-.... +
T Consensus 90 Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~----~---- 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQ----V---- 161 (652)
T ss_pred HHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhh----H----
Confidence 456778888888875555554455555566777888888888888886654322 1112222222111110 0
Q ss_pred HHHHHhCCCc--chHHHHHHHHHHHhcCCHHHHHHHHhhc--------CCCC-----hh-----HHHHHHHHHHhCCChh
Q 044131 335 SFCLKSGIVS--NSSVLTALSTVYSRLNEMEAARKLFDES--------SEKS-----LA-----SWNAMIAGYTQNGLTE 394 (784)
Q Consensus 335 ~~~~~~g~~~--~~~~~~~Li~~y~~~g~~~~A~~~f~~~--------~~~~-----~~-----~~~~li~~~~~~g~~~ 394 (784)
..+......| +-..+-...-.+...|++.+|+++++.. .+.| .. .---|.-.+...|+.+
T Consensus 162 ~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 162 QLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 0111111111 2222222344566788888888888765 1111 11 1122334566789999
Q ss_pred HHHHHHHHHHhCCCCCCHHHH----HHHHHHHhhhCchHH--------------HHHHHHHHHHcCCCCchhhHhHHHHH
Q 044131 395 EAISLFQEMQASKVAPNPVTV----SSILSACAQLGAISL--------------GKWVHELVKSRNFESNIYVSTALIDM 456 (784)
Q Consensus 395 ~A~~l~~~m~~~g~~pd~~t~----~~ll~a~~~~~~~~~--------------a~~i~~~~~~~g~~~~~~~~~~Li~~ 456 (784)
+|.+++...+... .+|.... +.++ +...-.++-. +......+.. .-.....--++|+.+
T Consensus 242 ea~~iy~~~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~-~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 242 EASSIYVDIIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSK-KQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999998874 4444222 2222 2222111111 0111111111 111123334566766
Q ss_pred HHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHH
Q 044131 457 YAKCGNIVEARELFDLMSH--KSEVTWNTMISGYGL-HGHGLEALQLFSEMLHSGIRPSG--VTFLSVLYACSHAGLVRE 531 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~ 531 (784)
|. +..+.++++-...+. |....=+.+..++.. .....+|.+++...-+. .|+. +.....+..-...|+++.
T Consensus 319 ~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~ 394 (652)
T KOG2376|consen 319 FT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEV 394 (652)
T ss_pred Hh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHH
Confidence 65 455677777777774 333333333333322 23577888888887764 3444 444455566778999999
Q ss_pred HHHHHH--------HhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhc
Q 044131 532 GDEIFQ--------SMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL--------AVEPGP-AVWGALLGACMIH 594 (784)
Q Consensus 532 a~~~~~--------~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m--------~~~p~~-~~~~~ll~a~~~~ 594 (784)
|.+++. .+. .+.-.+.+...++.++.+.+.-+-|.+++.+. +-.+.. .+|.-+...-.++
T Consensus 395 A~~il~~~~~~~~ss~~---~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~ 471 (652)
T KOG2376|consen 395 ALEILSLFLESWKSSIL---EAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH 471 (652)
T ss_pred HHHHHHHHhhhhhhhhh---hhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence 999998 443 22334556778889999888766555555432 223222 2344444445678
Q ss_pred CCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 044131 595 KDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATV 637 (784)
Q Consensus 595 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 637 (784)
|+-++|...++++++.+|++....+.+...|+... .+.|..+
T Consensus 472 G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d-~eka~~l 513 (652)
T KOG2376|consen 472 GNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLD-PEKAESL 513 (652)
T ss_pred CchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcC-HHHHHHH
Confidence 99999999999999999999999999999998764 3444444
No 74
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.99 E-value=1.9e-06 Score=88.81 Aligned_cols=400 Identities=13% Similarity=-0.002 Sum_probs=214.9
Q ss_pred HHHHhcCCCchhHHHHHHHHHhhCCCCCC-cccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCc-hhHHHHHHHHhhcC
Q 044131 79 IRGFSNNEMPKSSICFYTHLRKNTALTPD-NFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSD-LFVGAALVDLYFKF 156 (784)
Q Consensus 79 i~~~~~~g~~~~a~~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d-~~~~~~li~~y~~~ 156 (784)
-.-|.++|.+++|++ .+..... ..|| +.-|...-.++...|+++...+-....++.. |+ +-.+..-..++-..
T Consensus 122 GN~~f~~kkY~eAIk-yY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~l 196 (606)
T KOG0547|consen 122 GNKFFRNKKYDEAIK-YYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQL 196 (606)
T ss_pred hhhhhhcccHHHHHH-HHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhh
Confidence 345678899999999 8888776 5688 6667777777788899888877776666653 44 23445555666667
Q ss_pred CChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHH---------HHH-cCCCCCChhhHHhHHHHHhcccch
Q 044131 157 SWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGD---------MVR-NGGTWLDSTSVAAVLPAVAEVQEL 226 (784)
Q Consensus 157 g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~---------m~~-~~g~~pd~~t~~~ll~a~~~~~~~ 226 (784)
|++++|+.= +|-.++..++..+.-.--+-+++.. |.+ ...+-|......+.+..+...-..
T Consensus 197 g~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~ 267 (606)
T KOG0547|consen 197 GKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP 267 (606)
T ss_pred ccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence 777766531 2333344443332222122222211 111 113445554444444443211000
Q ss_pred hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-CChHHHHHHHhcC-------CCC---CeeeHHHHHH-------HHHh
Q 044131 227 RLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKC-GEVERAELLFRDI-------VRP---DLISCNAMIS-------GYTC 288 (784)
Q Consensus 227 ~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~-g~~~~A~~~f~~~-------~~~---d~~~~~~li~-------~~~~ 288 (784)
. ....+-..|...-..+=..|... ..+..|...+.+- +.. |... .-|.. -+.-
T Consensus 268 ~--------~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~l-e~~A~al~~~gtF~fL 338 (606)
T KOG0547|consen 268 L--------FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAEL-EYMAEALLLRGTFHFL 338 (606)
T ss_pred c--------ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhH-HHHHHHHHHhhhhhhh
Confidence 0 00000011111111121222111 1122333222211 111 1111 11111 1233
Q ss_pred CCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHH
Q 044131 289 NGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKL 368 (784)
Q Consensus 289 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 368 (784)
.|+...|.+.|+..+.....++.- |.-+-.++....+.+...+.|....+.. +.|+.+|..-..++.-.+++++|..-
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aD 416 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIAD 416 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHH
Confidence 577778888888877664443332 5566666777777777777777776665 44566777777777777778888888
Q ss_pred HhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCC-
Q 044131 369 FDESSEK---SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFE- 444 (784)
Q Consensus 369 f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~- 444 (784)
|++...- ++.+|--+--+.-+.+++++++..|++..+. ++--+..|+.....+...++++.|.+.++..++..-.
T Consensus 417 F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 417 FQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 8775543 3345555555555667777777888777664 4444566666777777777777777777777654211
Q ss_pred ------CchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044131 445 ------SNIYVSTALIDMYAKCGNIVEARELFDLMSHKS---EVTWNTMISGYGLHGHGLEALQLFSEML 505 (784)
Q Consensus 445 ------~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (784)
+.+.+.-+++-.--+ +++..|..++.+..+-| ...|-.|...-.|.|+.++|+++|++-.
T Consensus 496 ~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 122333333333323 56666666666555332 3355555555666666666666666543
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.98 E-value=1.4e-07 Score=94.19 Aligned_cols=198 Identities=13% Similarity=0.108 Sum_probs=103.7
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHH
Q 044131 377 LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDM 456 (784)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 456 (784)
...+..+...|...|++++|.+.|++..... +.+...+..+...+...|+++.|...+....+.. +.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~----------- 97 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PN----------- 97 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC-----------
Confidence 3456667777777777777777777766532 1223344444445555555555555555554432 22
Q ss_pred HHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHH
Q 044131 457 YAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEI 535 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~ 535 (784)
+...+..+...+...|++++|++.|++.......| +...+..+...+...|+.++|...
T Consensus 98 --------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 98 --------------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred --------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 23344444444555555555555555554422111 222344444455555666666666
Q ss_pred HHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 044131 536 FQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGACMIHKDTNLARVASEKLFEL 610 (784)
Q Consensus 536 ~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l 610 (784)
|+...+. .|+ ...+..+...+...|++++|.+.+++.. . +++...+..+...+...|+.+.|....+.+.+.
T Consensus 158 ~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 5555432 222 3445555556666666666666655441 1 223444445555556666666666666655444
No 76
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.98 E-value=7.8e-08 Score=99.66 Aligned_cols=210 Identities=14% Similarity=0.043 Sum_probs=144.9
Q ss_pred chHHHHHHHHHHHHcC-CCC--chhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 044131 427 AISLGKWVHELVKSRN-FES--NIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQL 500 (784)
Q Consensus 427 ~~~~a~~i~~~~~~~g-~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~ 500 (784)
..+.+..-+.+++... ..| ....+..+...|.+.|+.++|...|++.. ..+...|+.+...|...|++++|++.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~ 120 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEA 120 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4455555566666432 222 24557777788999999999999998775 24677899999999999999999999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-C-C
Q 044131 501 FSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-A-V 577 (784)
Q Consensus 501 ~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~-~ 577 (784)
|++..+ +.|+ ..++..+..++...|++++|.+.|+...+ ..|+..........+...++.++|.+.+++. . .
T Consensus 121 ~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~---~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 121 FDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ---DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999987 4564 56777788888889999999999998874 3565332222233445677899999998654 2 2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-------cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044131 578 EPGPAVWGALLGACMIHKDTNLARVASEKLF-------ELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 578 ~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~-------~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 645 (784)
.|+...| ..+....|+...+. .++.+. ++.|+.+..|..|+.+|...|++++|...+++..+.+
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~~-~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEET-LMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH---HHHHHHccCCCHHH-HHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333222 12222345554332 333333 4556677889999999999999999999998776533
No 77
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.97 E-value=1.9e-06 Score=93.68 Aligned_cols=397 Identities=12% Similarity=0.050 Sum_probs=206.9
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhh-H
Q 044131 239 LGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSST-I 314 (784)
Q Consensus 239 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~ 314 (784)
..+..|..+|..|.-+...+|+++.+.+.|++... .....|+.+-..|...|....|+.+++.-....-.|+..+ +
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 34678999999999999999999999999998744 4456799999999999999999999988765543454433 3
Q ss_pred HhHHHhhc-CCCChhHHHHHHHHHHHhC--C--CcchHHHHHHHHHHHhc----C-------CHHHHHHHHhhcCCC---
Q 044131 315 VGLIPVFY-PFGHLHLTNCIHSFCLKSG--I--VSNSSVLTALSTVYSRL----N-------EMEAARKLFDESSEK--- 375 (784)
Q Consensus 315 ~~ll~~~~-~~~~~~~a~~i~~~~~~~g--~--~~~~~~~~~Li~~y~~~----g-------~~~~A~~~f~~~~~~--- 375 (784)
...-+.|. +.+..++|..+-..++... . ...+..+..+.-+|... . ...++...+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33334443 3466666666666655521 1 11222333333333211 0 111222222222111
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHH
Q 044131 376 SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALID 455 (784)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 455 (784)
|..+---+---|+..++.+.|++..++....+-.-+...+..+.-.++..+++..|..+.+.....- +.|-.....-+.
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 1111111111233334444444444444444333334444444444444444444444444433210 000000000011
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-C-HHHHHHHHHHHHccCCHHHHH
Q 044131 456 MYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-S-GVTFLSVLYACSHAGLVREGD 533 (784)
Q Consensus 456 ~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d-~~t~~~ll~a~~~~g~~~~a~ 533 (784)
.-.+-++.++|......+. ..|... -+..+.|+-...+++...+.-.--.| | ..|+..+..-... ..+.+.
T Consensus 556 i~~~~~~~e~~l~t~~~~L----~~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~ 628 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKL----ALWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAG 628 (799)
T ss_pred hhhhcccHHHHHHHHHHHH----HHHHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcc
Confidence 1111233333332222111 011110 01112222223333333332110011 1 1233333322221 111111
Q ss_pred HHHHHhHHhcCCCCCc--------chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 044131 534 EIFQSMIHDHGFKPLA--------EHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVA 603 (784)
Q Consensus 534 ~~~~~m~~~~~~~p~~--------~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~ 603 (784)
|..-.......|.. ..|....+.+.+.+..++|...+.+. .+.| .+.+|.-.....-..|+.++|.+.
T Consensus 629 --se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~a 706 (799)
T KOG4162|consen 629 --SELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEA 706 (799)
T ss_pred --cccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHH
Confidence 00001222334432 35667888999999999998777665 3444 344676666777789999999999
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH--HHHHHHhCC
Q 044131 604 SEKLFELDPENVGYHVLLSNIYSAERDYLQAAT--VRQVVKKRK 645 (784)
Q Consensus 604 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~--~~~~m~~~~ 645 (784)
|..++.++|+++.....++.+|...|+-.-|.+ +.+.+.+.+
T Consensus 707 f~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 707 FLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 999999999999999999999999998777776 655555433
No 78
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.92 E-value=1e-07 Score=89.08 Aligned_cols=162 Identities=17% Similarity=0.158 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVD 557 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~ 557 (784)
+...+.-+|.+.|+...|..-+++.++. .|+ ..++..+...|...|..+.|.+.|+... .+.|+ -...|....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~ 111 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGA 111 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhH
Confidence 4455677888999999999999999884 454 4578888888999999999999999887 56676 678888899
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 044131 558 ILGRAGQLEKALEFIKGLAVEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQ 633 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 633 (784)
.|+..|++++|...|++..-.|+ +.+|..+.....+.|+.+.|+..+++.++++|+.+.....+++.....|++-+
T Consensus 112 FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 112 FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchH
Confidence 99999999999999988743332 44888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCC
Q 044131 634 AATVRQVVKKRKL 646 (784)
Q Consensus 634 a~~~~~~m~~~~~ 646 (784)
|...++....++.
T Consensus 192 Ar~~~~~~~~~~~ 204 (250)
T COG3063 192 ARLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHHhccc
Confidence 9999998887665
No 79
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.90 E-value=5.1e-07 Score=93.59 Aligned_cols=229 Identities=12% Similarity=0.009 Sum_probs=155.1
Q ss_pred CChhHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHH
Q 044131 391 GLTEEAISLFQEMQASK-VAPN--PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEAR 467 (784)
Q Consensus 391 g~~~~A~~l~~~m~~~g-~~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 467 (784)
+..+.++.-+.++.... ..|+ ...+......+...|+.+.|...+..+++.. +.+...++.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45566677776666432 2222 2345555566777788888888888877764 456788889999999999999999
Q ss_pred HHHhhcCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 044131 468 ELFDLMSH--K-SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHG 544 (784)
Q Consensus 468 ~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 544 (784)
..|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 99988753 3 5678888888999999999999999999884 56543222222334557789999999976543 2
Q ss_pred CCCCcchHHHHHHHHHhcCCHHH--HHHHHHh-CC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-CCc
Q 044131 545 FKPLAEHYACMVDILGRAGQLEK--ALEFIKG-LA----VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDP-ENV 615 (784)
Q Consensus 545 ~~p~~~~~~~lv~~l~r~g~~~e--A~~~~~~-m~----~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p-~~~ 615 (784)
..|+...+ .++..+ .|++.+ +.+.+.+ .. ..| ....|..|..++...|+.+.|...++++++++| +..
T Consensus 195 ~~~~~~~~-~~~~~~--lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWGW-NIVEFY--LGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccHH-HHHHHH--ccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 33433222 333333 444433 3333322 11 122 235899999999999999999999999999997 545
Q ss_pred chHHHHHHHHHh
Q 044131 616 GYHVLLSNIYSA 627 (784)
Q Consensus 616 ~~~~~l~~~y~~ 627 (784)
.+-..+..+...
T Consensus 272 e~~~~~~e~~~~ 283 (296)
T PRK11189 272 EHRYALLELALL 283 (296)
T ss_pred HHHHHHHHHHHH
Confidence 554455544333
No 80
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.81 E-value=4.4e-05 Score=80.96 Aligned_cols=417 Identities=12% Similarity=0.073 Sum_probs=200.3
Q ss_pred HhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHH--HHHHhh--cCC
Q 044131 82 FSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAA--LVDLYF--KFS 157 (784)
Q Consensus 82 ~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~--li~~y~--~~g 157 (784)
+..+|++++|+. ....+...+ +-|...+..=+-+..+.+.++.|..+ +.+.+. ..+.+. +=.+|+ +.+
T Consensus 22 ~~~~~e~e~a~k-~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~---ikk~~~---~~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 22 HGKNGEYEEAVK-TANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKL---IKKNGA---LLVINSFFFEKAYCEYRLN 93 (652)
T ss_pred hccchHHHHHHH-HHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHH---HHhcch---hhhcchhhHHHHHHHHHcc
Confidence 344555555555 444444422 22333344334444455555555422 222211 011111 234444 668
Q ss_pred ChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCh--hhHHhHHHHHhcccchhHHHHHHHH
Q 044131 158 WVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDS--TSVAAVLPAVAEVQELRLGMEIQCL 235 (784)
Q Consensus 158 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~~~~~ 235 (784)
..++|...++....-|..+-..-...+.+.|++++|+++|+.+.++ +. +|. ..-..++.+-... .+. .
T Consensus 94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~-dd~d~~~r~nl~a~~a~l----~~~----~ 163 (652)
T KOG2376|consen 94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NS-DDQDEERRANLLAVAAAL----QVQ----L 163 (652)
T ss_pred cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CC-chHHHHHHHHHHHHHHhh----hHH----H
Confidence 8888888888555545445555556677888888888888888765 22 221 1111122111110 110 1
Q ss_pred HHHhCCCCchhHHHH---HHHHHHhcCChHHHHHHHhcC--------CCCCee-----e-----HHHHHHHHHhCCCchH
Q 044131 236 GLKLGFHDHVYVLTG---LVSFYSKCGEVERAELLFRDI--------VRPDLI-----S-----CNAMISGYTCNGKTES 294 (784)
Q Consensus 236 ~~~~g~~~~~~~~~~---li~~y~~~g~~~~A~~~f~~~--------~~~d~~-----~-----~~~li~~~~~~g~~~~ 294 (784)
+......| ..+|.. ..-.+...|++.+|+++++.. .+.|.. . ---|.-.+...|+.++
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 11111112 222222 233466778888888888665 221111 0 1123345667899999
Q ss_pred HHHHHHHHHHcCCCCChhhHH---hHHHhhcCCCChhHH--HHHHHH-----------HHHhCCCcchHHHHHHHHHHHh
Q 044131 295 SLRLFRQLLASAERVNSSTIV---GLIPVFYPFGHLHLT--NCIHSF-----------CLKSGIVSNSSVLTALSTVYSR 358 (784)
Q Consensus 295 A~~l~~~m~~~g~~p~~~t~~---~ll~~~~~~~~~~~a--~~i~~~-----------~~~~g~~~~~~~~~~Li~~y~~ 358 (784)
|..+|...+... .+|+.... .=|.+.....++-.+ ...+.. .+...-.....--+.|+.+|.
T Consensus 243 a~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t- 320 (652)
T KOG2376|consen 243 ASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT- 320 (652)
T ss_pred HHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 999999988774 33432222 212233332222221 111110 001111112233355566654
Q ss_pred cCCHHHHHHHHhhcCCCC-hhHHHHHHHHHH--hCCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhhCchHHHHH
Q 044131 359 LNEMEAARKLFDESSEKS-LASWNAMIAGYT--QNGLTEEAISLFQEMQASKVAPNP--VTVSSILSACAQLGAISLGKW 433 (784)
Q Consensus 359 ~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~--~~g~~~~A~~l~~~m~~~g~~pd~--~t~~~ll~a~~~~~~~~~a~~ 433 (784)
+..+.++++-...+... ...+.+++.... +...+.+|.+++...-.. .|+. ......+......|+++.|..
T Consensus 321 -nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 -NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred -hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 45566777776666543 233444443322 222456666666665543 3333 333344445566788888888
Q ss_pred HHH--------HHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC------CCHH----HHHHHHHHHHHcCCHH
Q 044131 434 VHE--------LVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH------KSEV----TWNTMISGYGLHGHGL 495 (784)
Q Consensus 434 i~~--------~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~------~~~~----~~~~li~~~~~~g~~~ 495 (784)
++. .+.+.+. .+.+..+++.+|.+.++-+.|..++++... .... .|.-...--.++|+.+
T Consensus 398 il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 877 4444333 334556677778877777777776665431 1111 1222222223445555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044131 496 EALQLFSEMLHSGIRPSGVTFLSVLYACSH 525 (784)
Q Consensus 496 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 525 (784)
+|..+++++.+.. ++|..+...++.+|+.
T Consensus 476 ea~s~leel~k~n-~~d~~~l~~lV~a~~~ 504 (652)
T KOG2376|consen 476 EASSLLEELVKFN-PNDTDLLVQLVTAYAR 504 (652)
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHHHHHHh
Confidence 5555555555532 3444444444444443
No 81
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.77 E-value=6e-05 Score=82.85 Aligned_cols=255 Identities=16% Similarity=0.148 Sum_probs=155.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHH
Q 044131 380 WNAMIAGYTQNGLTEEAISLFQEMQASKVAPN-PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYA 458 (784)
Q Consensus 380 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 458 (784)
|.-+...|-..|++++|++++++.+.. .|+ ...|..-...+-+.|++.+|....+.+.... ..|..+-+-.+..+.
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHH
Confidence 355577788899999999999998875 565 5567777788889999999999999998876 457788888888999
Q ss_pred hcCCHHHHHHHHhhcCCCC------H----HHHHH--HHHHHHHcCCHHHHHHHHHHHHHC--CCC---C----------
Q 044131 459 KCGNIVEARELFDLMSHKS------E----VTWNT--MISGYGLHGHGLEALQLFSEMLHS--GIR---P---------- 511 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~~~~------~----~~~~~--li~~~~~~g~~~~A~~~~~~m~~~--g~~---p---------- 511 (784)
++|++++|.+++.....++ . ..|-. -..+|.+.|++..|++-|....+. .+. -
T Consensus 274 Ra~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~ 353 (517)
T PF12569_consen 274 RAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKM 353 (517)
T ss_pred HCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhc
Confidence 9999999999988877544 1 24433 356788999999998877766542 111 2
Q ss_pred CHHHHHHHHHHHHccCC-------HHHHHHHHHHhHHhcCCCCCcch-----------HHHHHHHH---HhcCCHHHHHH
Q 044131 512 SGVTFLSVLYACSHAGL-------VREGDEIFQSMIHDHGFKPLAEH-----------YACMVDIL---GRAGQLEKALE 570 (784)
Q Consensus 512 d~~t~~~ll~a~~~~g~-------~~~a~~~~~~m~~~~~~~p~~~~-----------~~~lv~~l---~r~g~~~eA~~ 570 (784)
...+|..+|...-+... ...|.+++-.+-..-........ -..+-.-. .+...-+++..
T Consensus 354 t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~ 433 (517)
T PF12569_consen 354 TLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQGEEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEK 433 (517)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccccccccccccCChHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 22334444443322211 12233343333221000000000 00000000 01111111211
Q ss_pred HHH-----------hC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 044131 571 FIK-----------GL----AVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAA 635 (784)
Q Consensus 571 ~~~-----------~m----~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 635 (784)
.-. +. +.++|.-..+.-|. ....=+++|...++-+.+..|++...|.+--.+|.+.|++--|.
T Consensus 434 ~~~~~~~~~~~~~~~~~~~~~~~~D~Dp~GekL~--~t~dPLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaL 511 (517)
T PF12569_consen 434 AAKKEPKKQQNKSKKKEKVEPKKKDDDPLGEKLL--KTEDPLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLAL 511 (517)
T ss_pred HHhhhhhhhhccccccccccCCcCCCCccHHHHh--cCCcHHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHH
Confidence 110 00 11112111111111 22334688999999999999999999999999999999998887
Q ss_pred HHHH
Q 044131 636 TVRQ 639 (784)
Q Consensus 636 ~~~~ 639 (784)
+-.+
T Consensus 512 qaL~ 515 (517)
T PF12569_consen 512 QALK 515 (517)
T ss_pred HHHH
Confidence 6543
No 82
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.76 E-value=0.00012 Score=78.55 Aligned_cols=217 Identities=12% Similarity=0.024 Sum_probs=119.9
Q ss_pred cCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHH
Q 044131 120 ACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCCFQDSIWV 196 (784)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l 196 (784)
..+....+....+.+++ +++....+....--.+...|+.++|......-.. ++.+.|..+--.+-...++++|+..
T Consensus 19 E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 45566667777666666 3333333322222234456888888887766554 4668899998888888999999999
Q ss_pred HHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhc---CCC
Q 044131 197 FGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRD---IVR 273 (784)
Q Consensus 197 ~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~---~~~ 273 (784)
|+.... +.||.... +.-|.-.-++.|+++.....-.. ...
T Consensus 98 y~nAl~---~~~dN~qi----------------------------------lrDlslLQ~QmRd~~~~~~tr~~LLql~~ 140 (700)
T KOG1156|consen 98 YRNALK---IEKDNLQI----------------------------------LRDLSLLQIQMRDYEGYLETRNQLLQLRP 140 (700)
T ss_pred HHHHHh---cCCCcHHH----------------------------------HHHHHHHHHHHHhhhhHHHHHHHHHHhhh
Confidence 998874 34554321 11111111222222222221111 122
Q ss_pred CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcC-CCCChhhHHhHHHh------hcCCCChhHHHHHHHHHHHhCCCcch
Q 044131 274 PDLISCNAMISGYTCNGKTESSLRLFRQLLASA-ERVNSSTIVGLIPV------FYPFGHLHLTNCIHSFCLKSGIVSNS 346 (784)
Q Consensus 274 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~------~~~~~~~~~a~~i~~~~~~~g~~~~~ 346 (784)
....+|....-++.-.|+...|..+.++..+.. -.|+...+.-.... ....|.++.+.+......+ .+....
T Consensus 141 ~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~-~i~Dkl 219 (700)
T KOG1156|consen 141 SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK-QIVDKL 219 (700)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh-HHHHHH
Confidence 345678888888888999999999998887764 24555554433221 1223334444333322211 112222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCCC
Q 044131 347 SVLTALSTVYSRLNEMEAARKLFDESSEK 375 (784)
Q Consensus 347 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~ 375 (784)
.....-.+.+.+.+++++|..++..+..+
T Consensus 220 a~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 220 AFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred HHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 23333445556666666666666665443
No 83
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=0.00052 Score=76.95 Aligned_cols=128 Identities=16% Similarity=0.192 Sum_probs=87.8
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 044131 361 EMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKS 440 (784)
Q Consensus 361 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 440 (784)
.+|.|.+.-++..+ ...|+.+..+-.+.|...+|++-|-+. -|+..|.-++.++.+.|.++.-..++..+.+
T Consensus 1090 ~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34444444333333 346999999999999999998877542 4678899999999999999999999988887
Q ss_pred cCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044131 441 RNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLF 501 (784)
Q Consensus 441 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (784)
..-+|. +-+.||-+|+|.+++.+-.+.... ||+.-...+..-+-..|.++.|.-+|
T Consensus 1162 k~~E~~--id~eLi~AyAkt~rl~elE~fi~g---pN~A~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1162 KVREPY--IDSELIFAYAKTNRLTELEEFIAG---PNVANIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred hhcCcc--chHHHHHHHHHhchHHHHHHHhcC---CCchhHHHHhHHHhhhhhhHHHHHHH
Confidence 765554 557889999999998887665432 44443344444444444444444433
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.68 E-value=1.2e-06 Score=89.39 Aligned_cols=81 Identities=15% Similarity=0.058 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh-HHHHHHHH
Q 044131 563 GQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDY-LQAATVRQ 639 (784)
Q Consensus 563 g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~-~~a~~~~~ 639 (784)
+.+++|..+|+++. ..+++.+.+.+..+....|++++|+.+++++++.+|.++.+...++-+....|+. +.+.+.+.
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 45666777766662 4566777777888888888888888888888888898888888888888888888 55667777
Q ss_pred HHHh
Q 044131 640 VVKK 643 (784)
Q Consensus 640 ~m~~ 643 (784)
.++.
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 7664
No 85
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.65 E-value=3.3e-05 Score=76.56 Aligned_cols=191 Identities=14% Similarity=0.074 Sum_probs=128.9
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHCCCCCCHHH-HHHHHHHH
Q 044131 452 ALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGH-------GLEALQLFSEMLHSGIRPSGVT-FLSVLYAC 523 (784)
Q Consensus 452 ~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~-------~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~ 523 (784)
.|+--|.+.+++.+|..+.+......+.-|-.-...++.+|+ .+-|.+.|+-.-+++..-|.+. --++.+++
T Consensus 290 NL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~f 369 (557)
T KOG3785|consen 290 NLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYF 369 (557)
T ss_pred hheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHH
Confidence 455678999999999999998875554444333333444443 3445555555445555544432 33455566
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHh-cCCHHHH
Q 044131 524 SHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMI-HKDTNLA 600 (784)
Q Consensus 524 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~-~g~~~~a 600 (784)
.-.-.+|+.+-+++++. .|=...|...| .+..+++..|.+.+|+++|-+.. --.|..+|.+++.-|.. .+..+.|
T Consensus 370 FL~~qFddVl~YlnSi~-sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 370 FLSFQFDDVLTYLNSIE-SYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHH-HHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 66778899999999885 33333444444 47889999999999999998774 22467788888877765 5777877
Q ss_pred HHHHHHHhcCC-CCCc-chHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 044131 601 RVASEKLFELD-PENV-GYHVLLSNIYSAERDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 601 ~~~~~~~~~l~-p~~~-~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 647 (784)
..++ ++.+ |.+. +...+++|.+.+++.+--|.+.|..+...+..
T Consensus 448 W~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~ 493 (557)
T KOG3785|consen 448 WDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT 493 (557)
T ss_pred HHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC
Confidence 6654 4433 3332 34557789999999999999999988875543
No 86
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.62 E-value=0.00022 Score=76.68 Aligned_cols=350 Identities=15% Similarity=0.132 Sum_probs=179.2
Q ss_pred HHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHH
Q 044131 255 YSKCGEVERAELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTN 331 (784)
Q Consensus 255 y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 331 (784)
+...|+-++|......-.. ++.+.|..+.-.+....++++|+..|+..+..+ ||.
T Consensus 51 L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~--~dN-------------------- 108 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE--KDN-------------------- 108 (700)
T ss_pred hhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC--CCc--------------------
Confidence 4455777777777665544 556778888777777888999999998887642 332
Q ss_pred HHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCC-
Q 044131 332 CIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDES---SEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASK- 407 (784)
Q Consensus 332 ~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g- 407 (784)
..++.-|.-.-+..|+++.....-... ....-..|..+..++.-.|+...|..+.++.....
T Consensus 109 --------------~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 109 --------------LQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred --------------HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 222222222222333333332222222 22344678888888888888888888888877654
Q ss_pred CCCCHHHHHHHHHH------HhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CCHH
Q 044131 408 VAPNPVTVSSILSA------CAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--KSEV 479 (784)
Q Consensus 408 ~~pd~~t~~~ll~a------~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~ 479 (784)
-.|+...+.....- ....|.++.+.+.+...... +......--.-.+.+.+.|++++|..++..+.. ||..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~ 253 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNL 253 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhH
Confidence 24555554433322 23456666666655444322 112222333455677888888888888888764 5555
Q ss_pred HHHHH-HHHHHHcCCHHHHH-HHHHHHHH----------------------------------CCCCCCHHHHHHHHHHH
Q 044131 480 TWNTM-ISGYGLHGHGLEAL-QLFSEMLH----------------------------------SGIRPSGVTFLSVLYAC 523 (784)
Q Consensus 480 ~~~~l-i~~~~~~g~~~~A~-~~~~~m~~----------------------------------~g~~pd~~t~~~ll~a~ 523 (784)
.|.-. ..++.+-.+.-+++ .+|....+ .|++|- |..+.+-+
T Consensus 254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLy 330 (700)
T KOG1156|consen 254 DYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLY 330 (700)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHH
Confidence 44433 33333333333333 44444433 222221 11222222
Q ss_pred HccCCHHH----HHHHHHHhHHhcCC----------CCCcc--hHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHH
Q 044131 524 SHAGLVRE----GDEIFQSMIHDHGF----------KPLAE--HYACMVDILGRAGQLEKALEFIKGL-AVEPGPA-VWG 585 (784)
Q Consensus 524 ~~~g~~~~----a~~~~~~m~~~~~~----------~p~~~--~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~ 585 (784)
-....++- +..+...+... |. +|+.. ++-+++..+-+.|+++.|+.+++.. .-.|+.+ .|.
T Consensus 331 k~p~k~~~le~Lvt~y~~~L~~~-~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~ 409 (700)
T KOG1156|consen 331 KDPEKVAFLEKLVTSYQHSLSGT-GMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYL 409 (700)
T ss_pred hchhHhHHHHHHHHHHHhhcccc-cCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHH
Confidence 11111111 11111111100 00 22221 2334455555666666666666543 3344433 333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044131 586 ALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 586 ~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 645 (784)
.=...+...|+++.|-..++++.++|-.|.....--++...++.+.++|.++..+....|
T Consensus 410 ~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 410 VKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 334445555666666666666666654444443344555555666666666655554433
No 87
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=0.00023 Score=72.35 Aligned_cols=360 Identities=11% Similarity=0.040 Sum_probs=197.4
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHc-CC-CchHHHHHHHHHH--------------Hc---
Q 044131 143 LFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMK-NC-CFQDSIWVFGDMV--------------RN--- 203 (784)
Q Consensus 143 ~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~-~g-~~~~A~~l~~~m~--------------~~--- 203 (784)
...-...+..|-..+.-+.|.....+.|.+-...-+.|+.+..+ .| +..++.--+.+.. +.
T Consensus 97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~ 176 (564)
T KOG1174|consen 97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVN 176 (564)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhc
Confidence 33444556666667777888888887776533333444433332 22 1112221111111 11
Q ss_pred C-----------CCCCChhhHHhHHHHHhcc--cchhHHHHHHHHH-HHhCCCCchhHHHHHHHHHHhcCChHHHHHHHh
Q 044131 204 G-----------GTWLDSTSVAAVLPAVAEV--QELRLGMEIQCLG-LKLGFHDHVYVLTGLVSFYSKCGEVERAELLFR 269 (784)
Q Consensus 204 ~-----------g~~pd~~t~~~ll~a~~~~--~~~~~a~~~~~~~-~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~ 269 (784)
+ .+.|+..+...-+++++.. ++-..+.+.+..+ ...-++.++....++.+.|...|+.++|...|+
T Consensus 177 g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe 256 (564)
T KOG1174|consen 177 GNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFS 256 (564)
T ss_pred chhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHH
Confidence 0 1233333333344444332 2222222333222 223456678888888888888898888888888
Q ss_pred cCCCCCeeeHHHH---HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcch
Q 044131 270 DIVRPDLISCNAM---ISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNS 346 (784)
Q Consensus 270 ~~~~~d~~~~~~l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~ 346 (784)
+...-|+.+...| .--+.+.|+.++--.+...+.... .-....|..-....-..++.+.|..+-+..++.. +.+.
T Consensus 257 ~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~ 334 (564)
T KOG1174|consen 257 STLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNH 334 (564)
T ss_pred HHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccc
Confidence 7655444433332 123456777777777766665432 1111111111222223445555555555554432 1222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcC--C-CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HHH
Q 044131 347 SVLTALSTVYSRLNEMEAARKLFDESS--E-KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSIL-SAC 422 (784)
Q Consensus 347 ~~~~~Li~~y~~~g~~~~A~~~f~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll-~a~ 422 (784)
..+-.-.......|+.++|.-.|+... . -+..+|.-|+..|...|.+.||+-+-+...+. +..+..++..+- ..|
T Consensus 335 ~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~ 413 (564)
T KOG1174|consen 335 EALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVL 413 (564)
T ss_pred hHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceee
Confidence 222222345556777888877777543 2 36677888888888888888877665554432 223334443331 223
Q ss_pred hh-hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC--CCCHHHHHHHHHHHHHcCCHHHHHH
Q 044131 423 AQ-LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS--HKSEVTWNTMISGYGLHGHGLEALQ 499 (784)
Q Consensus 423 ~~-~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~ 499 (784)
.- ..--++|+.+++...+.. +.-....+.+...+...|..+++..++++.. .+|....+.|...+...+.+.+|++
T Consensus 414 ~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~ 492 (564)
T KOG1174|consen 414 FPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAME 492 (564)
T ss_pred ccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHH
Confidence 22 223466777777666543 2234455666777777777777777777655 5777777777777777777777777
Q ss_pred HHHHHHH
Q 044131 500 LFSEMLH 506 (784)
Q Consensus 500 ~~~~m~~ 506 (784)
.|.....
T Consensus 493 ~y~~ALr 499 (564)
T KOG1174|consen 493 YYYKALR 499 (564)
T ss_pred HHHHHHh
Confidence 7777766
No 88
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=2.2e-06 Score=83.78 Aligned_cols=228 Identities=14% Similarity=0.090 Sum_probs=181.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHhh
Q 044131 348 VLTALSTVYSRLNEMEAARKLFDESSE--KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVS-SILSACAQ 424 (784)
Q Consensus 348 ~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~-~ll~a~~~ 424 (784)
--+-+...|.+.|.+.+|.+.|+.-.+ +-+.+|-.|-..|.+..+++.|+.+|.+-.+. .|-.+||. ...+.+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 346688899999999999999987543 46678888999999999999999999988764 67666664 45566777
Q ss_pred hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044131 425 LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLF 501 (784)
Q Consensus 425 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (784)
.++.+.+.++++.+.+.. +.++.....+...|.-.++++.|.+.+.++.+ .+...|+.+.-+|.-.++++-++.-|
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence 899999999999998875 55666667777788889999999999998763 67788999988888899999999999
Q ss_pred HHHHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CC
Q 044131 502 SEMLHSGIRPSGV--TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VE 578 (784)
Q Consensus 502 ~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~ 578 (784)
++.+..-..|+.. .|..+.......|+...|.+.|+-.+.. -....+.++.|.-+-.|.|++++|..+++... +.
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~--d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTS--DAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhcc--CcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9998866666653 4666777777789999999999877632 12236778888888888888888888887653 34
Q ss_pred CC
Q 044131 579 PG 580 (784)
Q Consensus 579 p~ 580 (784)
|+
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 43
No 89
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.60 E-value=9.8e-06 Score=76.10 Aligned_cols=193 Identities=16% Similarity=0.091 Sum_probs=114.1
Q ss_pred HHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHH
Q 044131 421 ACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEA 497 (784)
Q Consensus 421 a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A 497 (784)
.|...|+...|+.-++.+++.. +.+..++..+...|.+.|..+.|.+.|++.. ..+-...|....-++..|++++|
T Consensus 44 ~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA 122 (250)
T COG3063 44 GYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEA 122 (250)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHH
Confidence 3334444444444444444433 3344455555555666666666666665543 23444555555556666666777
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 044131 498 LQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL 575 (784)
Q Consensus 498 ~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m 575 (784)
...|++....-.-| -..||..+.-+-.+.|+.+.|.++|++.++ +.|+ ......+.+.....|++-+|..++++.
T Consensus 123 ~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~---~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~ 199 (250)
T COG3063 123 MQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE---LDPQFPPALLELARLHYKAGDYAPARLYLERY 199 (250)
T ss_pred HHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH---hCcCCChHHHHHHHHHHhcccchHHHHHHHHH
Confidence 77776666532211 234566666666667777777777776652 3444 455666777777777777777777765
Q ss_pred C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch
Q 044131 576 A--VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGY 617 (784)
Q Consensus 576 ~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 617 (784)
. ..++..+.--.+..-...||.+.+-+.-.++-.+-|.....
T Consensus 200 ~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 200 QQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 2 34666655555666667788877777777777777775543
No 90
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.57 E-value=1.8e-05 Score=86.85 Aligned_cols=255 Identities=11% Similarity=0.068 Sum_probs=149.1
Q ss_pred HHHHhcCCHHHHHHHHhhcCCC--ChhHH-HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhC----
Q 044131 354 TVYSRLNEMEAARKLFDESSEK--SLASW-NAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLG---- 426 (784)
Q Consensus 354 ~~y~~~g~~~~A~~~f~~~~~~--~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~---- 426 (784)
..+...|++++|.+.++.-... |..+| ......|.+.|+.++|..+|+.++.. .|+...|...+..|....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence 4456677777777777664432 43333 34456667777777777777777765 466666655555444111
Q ss_pred --chHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHH
Q 044131 427 --AISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHG-LEALQLFSE 503 (784)
Q Consensus 427 --~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~-~~A~~~~~~ 503 (784)
+.+.-.++++.+...- |..... ..+.-.+.....+ ..+..++..
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~-------------------------------~rl~L~~~~g~~F~~~~~~yl~~ 136 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAP-------------------------------RRLPLDFLEGDEFKERLDEYLRP 136 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccch-------------------------------hHhhcccCCHHHHHHHHHHHHHH
Confidence 2333334444333221 111000 0010011111111 234445566
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc-------------CCCCCcc--hHHHHHHHHHhcCCHHHH
Q 044131 504 MLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDH-------------GFKPLAE--HYACMVDILGRAGQLEKA 568 (784)
Q Consensus 504 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-------------~~~p~~~--~~~~lv~~l~r~g~~~eA 568 (784)
+...|+++ +|..|-..|......+-..+++....... .-.|+.. ++..+...|.+.|++++|
T Consensus 137 ~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~A 213 (517)
T PF12569_consen 137 QLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKA 213 (517)
T ss_pred HHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHH
Confidence 66677554 34444444444444444444444443221 0123322 335557778888888888
Q ss_pred HHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044131 569 LEFIKGL-AVEPGPA-VWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 569 ~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 646 (784)
++++++. ...|+.+ .|..-...+...|+++.|...++.+.++|+.|--...-.+..+.++|+.++|.++.......+.
T Consensus 214 l~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 214 LEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 8888864 4667644 6777777888888888888888888888888887777788888888888888888887766554
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.57 E-value=6.7e-05 Score=80.59 Aligned_cols=292 Identities=13% Similarity=-0.016 Sum_probs=171.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcC---CCChh---HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHH
Q 044131 348 VLTALSTVYSRLNEMEAARKLFDESS---EKSLA---SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNP-VTVSSILS 420 (784)
Q Consensus 348 ~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~ 420 (784)
.+..+...|...|+.+.+.+.+.... ..+.. ........+...|++++|.+.+++.... .|+. ..+.. ..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~ 84 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hH
Confidence 34444555555666666555444322 11211 1222334566788999999999888765 3433 23331 11
Q ss_pred HHhh----hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCC
Q 044131 421 ACAQ----LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGH 493 (784)
Q Consensus 421 a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~ 493 (784)
.+.. .+....+.+.... .....+........+...+...|++++|...+++..+ .+...+..+...|...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 2222 3344444444433 1111122233444566778889999999999988763 456678888888999999
Q ss_pred HHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcc-h--HHHHHHHHHhcCCHHH
Q 044131 494 GLEALQLFSEMLHSGI-RPSG--VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAE-H--YACMVDILGRAGQLEK 567 (784)
Q Consensus 494 ~~~A~~~~~~m~~~g~-~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~-~--~~~lv~~l~r~g~~~e 567 (784)
+++|+..+++...... .|+. ..+..+...+...|+.++|..+++.........+... . ...+...+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 9999999998877432 1232 2345677778889999999999998753211111111 1 1123333444443333
Q ss_pred HHHH--H-HhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC---------CCCcchHHHHHHHHHhcCCh
Q 044131 568 ALEF--I-KGL-AVEPG---PAVWGALLGACMIHKDTNLARVASEKLFELD---------PENVGYHVLLSNIYSAERDY 631 (784)
Q Consensus 568 A~~~--~-~~m-~~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~---------p~~~~~~~~l~~~y~~~g~~ 631 (784)
+.++ + ..- +..|. .........++...|+.+.|....+.+.... +......++.+.++...|++
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~ 323 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY 323 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence 3332 1 111 11111 2223355667778899999999888775422 12355667888899999999
Q ss_pred HHHHHHHHHHHh
Q 044131 632 LQAATVRQVVKK 643 (784)
Q Consensus 632 ~~a~~~~~~m~~ 643 (784)
++|.+.......
T Consensus 324 ~~A~~~L~~al~ 335 (355)
T cd05804 324 ATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999998876654
No 92
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.54 E-value=0.0028 Score=68.85 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=50.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHh-cCCCCCcchHHHH-HHHHHhc
Q 044131 554 CMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMI-HKDTNLARVASEKLF-ELDPENVGYHVLL-SNIYSAE 628 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~-~g~~~~a~~~~~~~~-~l~p~~~~~~~~l-~~~y~~~ 628 (784)
+-+|++...+++++|++.-++-..+|-..-|-++-.+... .|+..++..++++-= ..+|.|-..|-++ -++.++-
T Consensus 1297 aaidl~ien~qwdk~idtak~qnykpil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~lakp 1374 (1636)
T KOG3616|consen 1297 AAIDLMIENDQWDKAIDTAKKQNYKPILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDMLAKP 1374 (1636)
T ss_pred HHHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHhcCC
Confidence 3568888999999999888877777766667676665544 578888877776543 2456666666543 3344443
No 93
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.53 E-value=0.00017 Score=80.99 Aligned_cols=466 Identities=15% Similarity=0.070 Sum_probs=234.8
Q ss_pred HHHHHHHHHHHhCCCCc-hhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHH
Q 044131 126 IGVLLHGHAIVSGYGSD-LFVGAALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCCFQDSIWVFGDMV 201 (784)
Q Consensus 126 ~a~~~~~~~~~~g~~~d-~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 201 (784)
.+..++..+.....+++ ...+..|-..|...-+...|.+.|+..-+ .|..+|.+....|++...++.|..+.-..-
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHh
Confidence 34445555554444444 35677888888877788899999988765 366788999999999999999988833222
Q ss_pred HcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHH
Q 044131 202 RNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNA 281 (784)
Q Consensus 202 ~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~ 281 (784)
+......-...|...--.+...++...+..-+...++.. +.|...|..|..+|..+|++..|.++|++...-++.+|-.
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 110000001112222223344556666666666655543 3467778888888888888888888888776654444432
Q ss_pred H---HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Q 044131 282 M---ISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSR 358 (784)
Q Consensus 282 l---i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~ 358 (784)
- ...-+..|.+.+|+..+......- .++ ..++...|+.+..... .+.-
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii~~~-----s~e--------~~~q~gLaE~~ir~ak----------------d~~~ 683 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLIIYAF-----SLE--------RTGQNGLAESVIRDAK----------------DSAI 683 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHH-----HHH--------HHhhhhHHHHHHHHHH----------------HHHH
Confidence 1 123355678888887776654320 000 0011111111111111 1111
Q ss_pred cCC-------HHHHHHHHhhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCc
Q 044131 359 LNE-------MEAARKLFDESSE----KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGA 427 (784)
Q Consensus 359 ~g~-------~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 427 (784)
.|- ++++.+.|.-... .+...|-.+ ..|..+|.+.... .|+......+..-.-..+.
T Consensus 684 ~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~a----------sdac~~f~q~e~~--~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 684 TGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVA----------SDACYIFSQEEPS--IVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHH----------hHHHHHHHHhccc--chHHHHHHHHHHHHHhccc
Confidence 111 1222222211110 111222222 1223333333210 2222211111111111221
Q ss_pred h---H---HHHHHHHHHHHcCCCCchhhHhHHHHHHHh----cC----CHHHHHHHHhhcC---CCCHHHHHHHHHHHHH
Q 044131 428 I---S---LGKWVHELVKSRNFESNIYVSTALIDMYAK----CG----NIVEARELFDLMS---HKSEVTWNTMISGYGL 490 (784)
Q Consensus 428 ~---~---~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g----~~~~A~~~f~~~~---~~~~~~~~~li~~~~~ 490 (784)
. + .|.+.+-. ...+..+...+..|+.-|.+ +| +...|...+.... ..+...||+|.-. ..
T Consensus 752 l~~~d~l~Lg~~c~~~--hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg 828 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIA--HLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SG 828 (1238)
T ss_pred CcchhHHHHHHHHhhH--HHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hc
Confidence 1 1 01111100 01111123333333333322 22 1234555555433 3566777776554 55
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHH
Q 044131 491 HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKAL 569 (784)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~ 569 (784)
.|.+.-|.--|-+-... .+.+..+|..+...|....+++.|...|.+.. .+.|+ ...|--..-.....|+.-++.
T Consensus 829 ~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~ 904 (1238)
T KOG1127|consen 829 IGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERL 904 (1238)
T ss_pred cchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHH
Confidence 56666666656555443 24456677777777777777788877777665 45554 445555555555666666666
Q ss_pred HHHHh-----C--CCCCCHHHHHHHHHHHHhcCCHHH----------HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 044131 570 EFIKG-----L--AVEPGPAVWGALLGACMIHKDTNL----------ARVASEKLFELDPENVGYHVLLSNIYSAERDYL 632 (784)
Q Consensus 570 ~~~~~-----m--~~~p~~~~~~~ll~a~~~~g~~~~----------a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 632 (784)
.+|.. + +--|+..-|..-.---...||.+. |-.+.++.++-.|+...+|...+...-..+.+.
T Consensus 905 ~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~ 984 (1238)
T KOG1127|consen 905 ILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYR 984 (1238)
T ss_pred HHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHH
Confidence 66643 1 123444444444333344454443 333455556667777777777777777777777
Q ss_pred HHHHHHHH
Q 044131 633 QAATVRQV 640 (784)
Q Consensus 633 ~a~~~~~~ 640 (784)
+|.+...+
T Consensus 985 ~a~ela~R 992 (1238)
T KOG1127|consen 985 AALELATR 992 (1238)
T ss_pred HHHHHHHH
Confidence 76665533
No 94
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=0.00034 Score=76.73 Aligned_cols=389 Identities=15% Similarity=0.108 Sum_probs=225.2
Q ss_pred CchhHHHHHHH--HhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCC--------CCCCh
Q 044131 141 SDLFVGAALVD--LYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGG--------TWLDS 210 (784)
Q Consensus 141 ~d~~~~~~li~--~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g--------~~pd~ 210 (784)
-|..+..++++ .|.--|+++.|-+-.+.+. +.+.|..|.+.+++..+.+-|.-.+-.|....| -.|+
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 46777778876 5778899999987766654 456799999999999999988887777754322 1232
Q ss_pred hhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC-CeeeHHHHHHHHHhC
Q 044131 211 TSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRP-DLISCNAMISGYTCN 289 (784)
Q Consensus 211 ~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~-d~~~~~~li~~~~~~ 289 (784)
.+=.-+.-....+|-+++|+.++.+..+.. .|=..|-..|.+++|.++-+.-.+- -..+|-.-..-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 333333444567889999999998887643 3445678889999998886543221 112444445555567
Q ss_pred CCchHHHHHHHHH----------HHcCC---------CCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHH
Q 044131 290 GKTESSLRLFRQL----------LASAE---------RVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLT 350 (784)
Q Consensus 290 g~~~~A~~l~~~m----------~~~g~---------~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 350 (784)
++.+.|++.|++- +.... .-|...|...-.-.-..|+.+.|..++..... |-
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~f 942 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YF 942 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hh
Confidence 8888888888753 11110 11222222222223334444444444443321 22
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHH
Q 044131 351 ALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISL 430 (784)
Q Consensus 351 ~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~ 430 (784)
+++...+-.|..++|-++-++ ..|......+..-|-..|++.+|..+|.+.+ +|.+.|+.|-..+--++
T Consensus 943 s~VrI~C~qGk~~kAa~iA~e--sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEE--SGDKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDR 1011 (1416)
T ss_pred hheeeEeeccCchHHHHHHHh--cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHH
Confidence 333444445555555555443 2355566677788888888888888887764 34555555543322111
Q ss_pred HH------------HHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC--------------CCCHHHHHHH
Q 044131 431 GK------------WVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS--------------HKSEVTWNTM 484 (784)
Q Consensus 431 a~------------~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--------------~~~~~~~~~l 484 (784)
-. ..-++..+.|.. ..--+-.|-|.|.+.+|+++-=+-. ..|....+--
T Consensus 1012 L~nlal~s~~~d~v~aArYyEe~g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~Rc 1086 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEELGGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRC 1086 (1416)
T ss_pred HHHHHhhcCchhHHHHHHHHHHcchh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHH
Confidence 11 111111122211 1123446778888877776532211 1355555666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHH
Q 044131 485 ISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILG 560 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~ 560 (784)
..-|..+.++++|..++-..++ |...+..|...| +.-..++-+.|.-...-.|+ .+....+.+.+.
T Consensus 1087 adFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~ 1156 (1416)
T KOG3617|consen 1087 ADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCL 1156 (1416)
T ss_pred HHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHH
Confidence 6667778888888888776654 445555565544 22233333344322112233 345666778888
Q ss_pred hcCCHHHHHHHHHhCC
Q 044131 561 RAGQLEKALEFIKGLA 576 (784)
Q Consensus 561 r~g~~~eA~~~~~~m~ 576 (784)
+.|.+.-|-+-|.+.+
T Consensus 1157 qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1157 QQGAYHAATKKFTQAG 1172 (1416)
T ss_pred hccchHHHHHHHhhhh
Confidence 8888888887776654
No 95
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.51 E-value=0.0016 Score=79.43 Aligned_cols=361 Identities=9% Similarity=-0.021 Sum_probs=172.1
Q ss_pred HHhhcCCChHHHHHHhccCCCCCccc--HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhH
Q 044131 151 DLYFKFSWVKSARKVFDKMPEKDTVL--WNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRL 228 (784)
Q Consensus 151 ~~y~~~g~~~~A~~~f~~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~ 228 (784)
..|...|++.+|..........+... ...........|+++.+...+..+... ....+..........+...++.++
T Consensus 349 ~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 349 EAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHHH
Confidence 33555666666666555554332211 011122344566666666666554221 111112222222333345567777
Q ss_pred HHHHHHHHHHhCCC------Cc--hhHHHHHHHHHHhcCChHHHHHHHhcCCC----CCe----eeHHHHHHHHHhCCCc
Q 044131 229 GMEIQCLGLKLGFH------DH--VYVLTGLVSFYSKCGEVERAELLFRDIVR----PDL----ISCNAMISGYTCNGKT 292 (784)
Q Consensus 229 a~~~~~~~~~~g~~------~~--~~~~~~li~~y~~~g~~~~A~~~f~~~~~----~d~----~~~~~li~~~~~~g~~ 292 (784)
+..+...+.+.--. +. ......+...+...|++++|...+++... .+. ..++.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 77666655442110 11 11112223344566677776666655321 111 1223344445556666
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 044131 293 ESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDES 372 (784)
Q Consensus 293 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~ 372 (784)
++|...+.+.....-.... ..........+...+...|+++.|...+++.
T Consensus 508 ~~A~~~~~~al~~~~~~g~------------------------------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 557 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDV------------------------------YHYALWSLLQQSEILFAQGFLQAAYETQEKA 557 (903)
T ss_pred HHHHHHHHHHHHHHhhhcc------------------------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666665432110000 0001122233344444555555555544432
Q ss_pred CC-------C----ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCC--CCCC--HHHHHHHHHHHhhhCchHHHHHHHHH
Q 044131 373 SE-------K----SLASWNAMIAGYTQNGLTEEAISLFQEMQASK--VAPN--PVTVSSILSACAQLGAISLGKWVHEL 437 (784)
Q Consensus 373 ~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~ 437 (784)
.. + ....+..+...+...|++++|...+.+..... ..+. ...+..+.......|+.+.|...+..
T Consensus 558 l~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 558 FQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 0 01123333344445566666666665543321 1111 22233333445556666666666655
Q ss_pred HHHc----CCCCc--hhhHhHHHHHHHhcCCHHHHHHHHhhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044131 438 VKSR----NFESN--IYVSTALIDMYAKCGNIVEARELFDLMSHKS-------EVTWNTMISGYGLHGHGLEALQLFSEM 504 (784)
Q Consensus 438 ~~~~----g~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (784)
+... +.... .......+..+...|+.+.|...+.....+. ...+..+..++...|++++|...+++.
T Consensus 638 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~a 717 (903)
T PRK04841 638 LENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEEL 717 (903)
T ss_pred HHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5332 10000 0001112244555778888888776654321 111345566677888888888888877
Q ss_pred HHC----CCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 044131 505 LHS----GIRPSG-VTFLSVLYACSHAGLVREGDEIFQSMIHD 542 (784)
Q Consensus 505 ~~~----g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 542 (784)
... |..++. .+...+..++...|+.++|...+.+..+.
T Consensus 718 l~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 718 NENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 653 333322 34556667788889999998888888753
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=0.0049 Score=68.07 Aligned_cols=267 Identities=10% Similarity=0.045 Sum_probs=154.8
Q ss_pred HhccCCCCCcchHHHHHH--HHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHh---
Q 044131 63 LFFSIPKPDLFLFNVIIR--GFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVS--- 137 (784)
Q Consensus 63 ~f~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--- 137 (784)
-|-...+-|..+-.+|+. -|..-|+.+.|.+ -.+..+. ...|..+.+.|.+.++++-|+-.+..|...
T Consensus 717 dFvgle~Cd~~TRkaml~FSfyvtiG~MD~Afk-sI~~IkS------~~vW~nmA~McVkT~RLDVAkVClGhm~~aRga 789 (1416)
T KOG3617|consen 717 DFVGLENCDESTRKAMLDFSFYVTIGSMDAAFK-SIQFIKS------DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGA 789 (1416)
T ss_pred HhcCccccCHHHHHhhhceeEEEEeccHHHHHH-HHHHHhh------hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhH
Confidence 343444455556666653 4566677777766 4444332 345667777777766666666655554321
Q ss_pred -----CC-CCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChh
Q 044131 138 -----GY-GSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDST 211 (784)
Q Consensus 138 -----g~-~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 211 (784)
.. .++ ..-....-.-...|.+++|..++.+-..- ..|=.-|-..|++++|+++-+.--+- .+ ..
T Consensus 790 RAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~-----DLlNKlyQs~g~w~eA~eiAE~~DRi-HL---r~ 859 (1416)
T KOG3617|consen 790 RALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKRY-----DLLNKLYQSQGMWSEAFEIAETKDRI-HL---RN 859 (1416)
T ss_pred HHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----HHHHHHHHhcccHHHHHHHHhhccce-eh---hh
Confidence 11 121 22222222334567788888887765542 33444566678888888776543211 11 23
Q ss_pred hHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCC
Q 044131 212 SVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGK 291 (784)
Q Consensus 212 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~ 291 (784)
||..-.+-+...+|.+.|.+.++..-.. --.+...|. .++....++.+++.++....| ...-+-..|+
T Consensus 860 Tyy~yA~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~d~~L~~W--WgqYlES~Ge 927 (1416)
T KOG3617|consen 860 TYYNYAKYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKRDESLYSW--WGQYLESVGE 927 (1416)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhccchHHHHH--HHHHHhcccc
Confidence 5555555555566777777666553111 111111111 133344444455555544433 3333445799
Q ss_pred chHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhh
Q 044131 292 TESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDE 371 (784)
Q Consensus 292 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 371 (784)
.+.|+.+|..... |-++++..+-.|+.+.|-+|-.+ ..|....-.|.++|-..|++.+|...|-+
T Consensus 928 mdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTr 992 (1416)
T KOG3617|consen 928 MDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTR 992 (1416)
T ss_pred hHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999988754 55667777888898888887654 34666777889999999999999988875
Q ss_pred cC
Q 044131 372 SS 373 (784)
Q Consensus 372 ~~ 373 (784)
..
T Consensus 993 Aq 994 (1416)
T KOG3617|consen 993 AQ 994 (1416)
T ss_pred HH
Confidence 43
No 97
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.45 E-value=3.8e-06 Score=76.59 Aligned_cols=121 Identities=12% Similarity=0.116 Sum_probs=92.7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 044131 499 QLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-A 576 (784)
Q Consensus 499 ~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~ 576 (784)
.+|++..+ +.|+. +.....++...|++++|...|+... .+.|+ ...|..+..++.+.|++++|...+++. .
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 45555555 44554 4456667788888888888888876 44554 677788888888888888888888876 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 577 VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 577 ~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
..| ++..|..+..++...|+.++|...+++++++.|+++..+.+.+++..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 445 56688888888888999999999999999999999998888877644
No 98
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.45 E-value=4.4e-06 Score=88.30 Aligned_cols=215 Identities=13% Similarity=0.098 Sum_probs=150.3
Q ss_pred hhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHH
Q 044131 424 QLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQL 500 (784)
Q Consensus 424 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~ 500 (784)
+.|++..|.-.|+..++.. +.+...|--|.-..+..++-..|+..+.+..+ .|....-+|...|...|.-.+|+..
T Consensus 297 ~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~ 375 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKM 375 (579)
T ss_pred hcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHH
Confidence 4455555555555555543 34455555555555555555556555555442 3455556666667777777777777
Q ss_pred HHHHHHCCCC--------CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 044131 501 FSEMLHSGIR--------PSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFI 572 (784)
Q Consensus 501 ~~~m~~~g~~--------pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~ 572 (784)
++.-+....+ ++.. +..- ....+........++|-.+....+..+|.+.+.+|.-+|--.|.+++|.+.|
T Consensus 376 L~~Wi~~~p~y~~l~~a~~~~~-~~~~-~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf 453 (579)
T KOG1125|consen 376 LDKWIRNKPKYVHLVSAGENED-FENT-KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF 453 (579)
T ss_pred HHHHHHhCccchhccccCcccc-ccCC-cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence 7766543210 0000 0000 1122223345556777777766676788889999999999999999999999
Q ss_pred HhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 573 KGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 573 ~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
+.. .++|+ ...|+-|........+.++|+.+|.+++++.|.-..+...|+-.|...|.++||.+.+-..
T Consensus 454 ~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 454 EAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred HHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 986 57885 6699999999999999999999999999999999999999999999999999999987543
No 99
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.42 E-value=1.9e-05 Score=79.23 Aligned_cols=179 Identities=16% Similarity=0.041 Sum_probs=112.0
Q ss_pred chhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CC-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----H
Q 044131 446 NIYVSTALIDMYAKCGNIVEARELFDLMSH--KS-E---VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV----T 515 (784)
Q Consensus 446 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t 515 (784)
....+..+...|.+.|++++|...|+++.. |+ . .+|..+..+|.+.|++++|+..|+++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 344555666667777777777777776542 22 1 35566667777777777777777777763 23221 3
Q ss_pred HHHHHHHHHcc--------CCHHHHHHHHHHhHHhcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044131 516 FLSVLYACSHA--------GLVREGDEIFQSMIHDHGFKPLAE-HYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGA 586 (784)
Q Consensus 516 ~~~ll~a~~~~--------g~~~~a~~~~~~m~~~~~~~p~~~-~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ 586 (784)
+..+..++... |+.++|.+.|+.+.+. .|+.. .+..+. +.+...... ......
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~----~~~~~~~~~-----------~~~~~~ 171 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKK----RMDYLRNRL-----------AGKELY 171 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHH----HHHHHHHHH-----------HHHHHH
Confidence 33344444433 5666777777766643 34322 111111 111111100 001224
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 587 LLGACMIHKDTNLARVASEKLFELDPENV---GYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
+...+...|+.+.|...++++++..|+++ ..+..++.+|...|++++|...++.+..+
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 55667889999999999999999877654 68899999999999999999998887653
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.42 E-value=1.3e-05 Score=82.05 Aligned_cols=162 Identities=14% Similarity=0.070 Sum_probs=116.0
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSH- 525 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~- 525 (784)
..+......+|...|++++|+++++.. .+.......+..|.+.++.+.|.+.++.|.+. ..| .+...+..++..
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l 176 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNL 176 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHH
Confidence 333344445677889999998888776 45666667788888999999999999999873 344 344445554432
Q ss_pred ---cCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HH
Q 044131 526 ---AGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDT-NL 599 (784)
Q Consensus 526 ---~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~-~~ 599 (784)
.+.+.+|..+|+++.+. ..+++...+.+.-+....|+++||++++++. ...| ++.++-.++..+...|+. +.
T Consensus 177 ~~g~e~~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~ 254 (290)
T PF04733_consen 177 ATGGEKYQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEA 254 (290)
T ss_dssp HHTTTCCCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHH
T ss_pred HhCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhH
Confidence 33688999999998754 4567788888888999999999999998775 4455 455777787777888877 77
Q ss_pred HHHHHHHHhcCCCCCc
Q 044131 600 ARVASEKLFELDPENV 615 (784)
Q Consensus 600 a~~~~~~~~~l~p~~~ 615 (784)
+.+...++....|+++
T Consensus 255 ~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 255 AERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHhCCCCh
Confidence 8888888888889865
No 101
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.42 E-value=4.9e-05 Score=87.82 Aligned_cols=200 Identities=15% Similarity=0.134 Sum_probs=167.6
Q ss_pred CCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044131 444 ESNIYVSTALIDMYAKCGNIVEARELFDLMSH--------KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT 515 (784)
Q Consensus 444 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 515 (784)
+.+...|-..|......++++.|++++++... .-.-.|.++++.-...|.-+...++|+++.+. ---...
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 44566777788888889999999999988762 23458999999888889889999999999883 222345
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 044131 516 FLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP---GPAVWGALLGAC 591 (784)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~a~ 591 (784)
|..|+.-|...+..++|-++++.|.++++ .....|...++.+.+..+-+.|..++++. ..-| ......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999877 66788999999999999999999999775 3333 344566666777
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 647 (784)
.++||.+.|+.+++.++.-.|.-...|..++++-.+.|..+.++.+|++.-..++.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 89999999999999999999999999999999999999999999999998876654
No 102
>PF12854 PPR_1: PPR repeat
Probab=98.41 E-value=2.7e-07 Score=60.12 Aligned_cols=33 Identities=33% Similarity=0.462 Sum_probs=26.6
Q ss_pred CCCCchhHHHHHHHHhhcCCChHHHHHHhccCC
Q 044131 138 GYGSDLFVGAALVDLYFKFSWVKSARKVFDKMP 170 (784)
Q Consensus 138 g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~ 170 (784)
|+.||+++||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
No 103
>PF12854 PPR_1: PPR repeat
Probab=98.40 E-value=3.7e-07 Score=59.48 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=27.6
Q ss_pred CCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC
Q 044131 240 GFHDHVYVLTGLVSFYSKCGEVERAELLFRDIV 272 (784)
Q Consensus 240 g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~ 272 (784)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 678888888888888888888888888888874
No 104
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.00025 Score=74.81 Aligned_cols=212 Identities=12% Similarity=0.077 Sum_probs=121.4
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHH----------HHHHHHH
Q 044131 417 SILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEV----------TWNTMIS 486 (784)
Q Consensus 417 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~----------~~~~li~ 486 (784)
.+.++.-...+++.+.+-+...+... .++.-++.....|...|.+.+....-+...+..-. +...+..
T Consensus 229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 34444445556666666666666554 44555555666666666665555444333221111 1222334
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCc--chHHHHHHHHHhcCC
Q 044131 487 GYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLA--EHYACMVDILGRAGQ 564 (784)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~lv~~l~r~g~ 564 (784)
+|...++++.|+..|++....-..||..+ +....+++....+... -+.|.. +.-.+ ..-+.+.|+
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~k-Gne~Fk~gd 373 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREK-GNEAFKKGD 373 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHH-HHHHHhccC
Confidence 55666777777777777666544444322 1122333333333221 233432 11111 445567777
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 565 LEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 565 ~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
+.+|...+.++ ...| |...|.....++.+.|++..|..-++..++++|+....|..=+-++....+|+.|.+.+..-.
T Consensus 374 y~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777665 2345 455666666677777777777777777777777777777777777777777777777776655
Q ss_pred h
Q 044131 643 K 643 (784)
Q Consensus 643 ~ 643 (784)
+
T Consensus 454 e 454 (539)
T KOG0548|consen 454 E 454 (539)
T ss_pred h
Confidence 4
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.37 E-value=0.00031 Score=85.73 Aligned_cols=294 Identities=13% Similarity=0.032 Sum_probs=174.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcC----CCC------hh--HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH----H
Q 044131 350 TALSTVYSRLNEMEAARKLFDESS----EKS------LA--SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNP----V 413 (784)
Q Consensus 350 ~~Li~~y~~~g~~~~A~~~f~~~~----~~~------~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~----~ 413 (784)
......+...|++++|...+.... ..+ .. ....+...+...|++++|...+++....-...+. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 334445556777777777665432 111 11 1112223455678888888888877653111121 2
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHHc----CC-CCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC-------C----C
Q 044131 414 TVSSILSACAQLGAISLGKWVHELVKSR----NF-ESNIYVSTALIDMYAKCGNIVEARELFDLMSH-------K----S 477 (784)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-------~----~ 477 (784)
....+...+...|+++.|...+..+... |- .........+...+...|++++|...+++... + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3334444556778888888887776642 11 11123445566677888888888887765431 1 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchH-
Q 044131 478 EVTWNTMISGYGLHGHGLEALQLFSEMLHS--GIRPS--GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHY- 552 (784)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~- 552 (784)
...+..+...+...|++++|...+++.... ...+. ..++..+.......|+.++|...++.......-......+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 223444555566679999998888877652 11122 2234445556777889999988888775321111111111
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHhCCC--CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhcCC------CCCcc
Q 044131 553 ----ACMVDILGRAGQLEKALEFIKGLAV--EPGP----AVWGALLGACMIHKDTNLARVASEKLFELD------PENVG 616 (784)
Q Consensus 553 ----~~lv~~l~r~g~~~eA~~~~~~m~~--~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~------p~~~~ 616 (784)
......+...|+.+.|.+++..... .... ..+..+..++...|+.+.|...++++++.. ++...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 1112444567889999888866531 1111 124456667778899999999888887642 22234
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 617 YHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 617 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.+..++.+|...|+.++|...+....+
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677888899999999999888776654
No 106
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.37 E-value=0.00063 Score=73.01 Aligned_cols=265 Identities=10% Similarity=-0.005 Sum_probs=171.9
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCCCHHHHHHH-HHHHhhhCchHHHHHHHHHHHHcCCCCchhhHh---
Q 044131 377 LASWNAMIAGYTQNGLTEEAISLFQEMQASK-VAPNPVTVSSI-LSACAQLGAISLGKWVHELVKSRNFESNIYVST--- 451 (784)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~t~~~l-l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~--- 451 (784)
...|..+...+...|+.+++...+.+..... ..++......+ ...+...|+++.+..++..+.+.. +.+...++
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 4567777777888888888877777655432 12333222222 223456789999999999988764 44544444
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044131 452 ALIDMYAKCGNIVEARELFDLMSH--KS-EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGL 528 (784)
Q Consensus 452 ~Li~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 528 (784)
.+.......|..+.+.+.+..... |+ ...+..+...+...|++++|+..+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 222333345666777777665332 22 3344556677889999999999999999853 3345667778889999999
Q ss_pred HHHHHHHHHHhHHhcCCCCCc--chHHHHHHHHHhcCCHHHHHHHHHhCC-CCC--CHHHH--H--HHHHHHHhcCCHHH
Q 044131 529 VREGDEIFQSMIHDHGFKPLA--EHYACMVDILGRAGQLEKALEFIKGLA-VEP--GPAVW--G--ALLGACMIHKDTNL 599 (784)
Q Consensus 529 ~~~a~~~~~~m~~~~~~~p~~--~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p--~~~~~--~--~ll~a~~~~g~~~~ 599 (784)
+++|..+++...+.....|+. ..|..+...+...|++++|..++++.. ..| ..... + .++.-....|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999887532222332 235578889999999999999999862 233 22211 1 34445556665555
Q ss_pred HHHH---HHHHhcCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 600 ARVA---SEKLFELDPE--NVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 600 a~~~---~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+.+. ........|. ....-...+..+...|++++|.+..+.++.
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 5554 2222221122 112223567778889999999999988865
No 107
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.36 E-value=0.00072 Score=67.15 Aligned_cols=307 Identities=14% Similarity=0.097 Sum_probs=176.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHH---hhcCCCChhHHHHHHHHHHHhCCCcchHH-HHHHHHHHH
Q 044131 282 MISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIP---VFYPFGHLHLTNCIHSFCLKSGIVSNSSV-LTALSTVYS 357 (784)
Q Consensus 282 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~---~~~~~~~~~~a~~i~~~~~~~g~~~~~~~-~~~Li~~y~ 357 (784)
+-..+...|++..|+.-|....+ .|+..|.++.+ .|...|....|..-+..++.. .||-.. ..--.....
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 45566777888888888887754 34444444433 445555555555555555443 343221 111223456
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHH
Q 044131 358 RLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHEL 437 (784)
Q Consensus 358 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~ 437 (784)
+.|.++.|..-|+.+...+.. -+....++.+ +.+.+++ ......+..+...|+...+......
T Consensus 118 K~Gele~A~~DF~~vl~~~~s-~~~~~eaqsk-------l~~~~e~---------~~l~~ql~s~~~~GD~~~ai~~i~~ 180 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPS-NGLVLEAQSK-------LALIQEH---------WVLVQQLKSASGSGDCQNAIEMITH 180 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCC-cchhHHHHHH-------HHhHHHH---------HHHHHHHHHHhcCCchhhHHHHHHH
Confidence 677777777777665543221 0000011111 1111111 1122333444556777777777777
Q ss_pred HHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044131 438 VKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLM---SHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV 514 (784)
Q Consensus 438 ~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 514 (784)
+++.. +.|...+..-...|.+.|.+..|+.-+... ...+....--+-..+.+.|+.+.++...++-++ +.||.-
T Consensus 181 llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK 257 (504)
T KOG0624|consen 181 LLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHK 257 (504)
T ss_pred HHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchh
Confidence 77654 567777777788888888888887655544 345666666777777788888888888877776 567753
Q ss_pred H----HHHH---------HHHHHccCCHHHHHHHHHHhHHhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 044131 515 T----FLSV---------LYACSHAGLVREGDEIFQSMIHDHGFKPL-----AEHYACMVDILGRAGQLEKALEFIKGL- 575 (784)
Q Consensus 515 t----~~~l---------l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~lv~~l~r~g~~~eA~~~~~~m- 575 (784)
. |..| +......+.+.++.+-.+...+ ..|. ...+..+-..+...|++.||+....+.
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk---~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL 334 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK---NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL 334 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh---cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH
Confidence 2 1111 1112334556666666655543 2343 223334445566677777777776654
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch
Q 044131 576 AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGY 617 (784)
Q Consensus 576 ~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 617 (784)
.+.|| +.++.--..|+.....++.|+.-|+++.+++|+|..+
T Consensus 335 ~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 335 DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 35665 4466666667777777777777777777777776543
No 108
>PLN02789 farnesyltranstransferase
Probab=98.32 E-value=0.00013 Score=75.65 Aligned_cols=212 Identities=13% Similarity=0.089 Sum_probs=116.8
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhhhC-chHHHHHHHHHHHHcCCCCchhhHhHHHHH
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVT-VSSILSACAQLG-AISLGKWVHELVKSRNFESNIYVSTALIDM 456 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 456 (784)
+++.+-..+...++.++|+.+..+++.. .|+..| +..--.++..++ .++++...+..+++..
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-------------- 102 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-------------- 102 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC--------------
Confidence 4555555566666777777777766653 444332 222112222233 2344444444444332
Q ss_pred HHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 044131 457 YAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHG--LEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDE 534 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 534 (784)
.++..+|+-....+.+.|+. ++++.+++++.+.. +-|..+|....-++.+.|+++++++
T Consensus 103 ------------------pknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 103 ------------------PKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred ------------------CcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHH
Confidence 23333444433333333432 44555555555532 2234455555555555566666666
Q ss_pred HHHHhHHhcCCCC-CcchHHHHHHHHHhc---CC----HHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhc----CCHHHH
Q 044131 535 IFQSMIHDHGFKP-LAEHYACMVDILGRA---GQ----LEKALEFIKG-LAVEP-GPAVWGALLGACMIH----KDTNLA 600 (784)
Q Consensus 535 ~~~~m~~~~~~~p-~~~~~~~lv~~l~r~---g~----~~eA~~~~~~-m~~~p-~~~~~~~ll~a~~~~----g~~~~a 600 (784)
+++.+++. .| +...|+....++.+. |. .+++.++.++ +...| |...|+.+.+.+..+ ++..+|
T Consensus 164 ~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~ 240 (320)
T PLN02789 164 YCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEV 240 (320)
T ss_pred HHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhH
Confidence 66666532 22 233444433333332 22 2456666643 34556 566999999988874 345678
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 044131 601 RVASEKLFELDPENVGYHVLLSNIYSAE 628 (784)
Q Consensus 601 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 628 (784)
...+.+++..+|.++.....|+++|...
T Consensus 241 ~~~~~~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 241 SSVCLEVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence 8888999999999999999999999863
No 109
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.32 E-value=2.2e-05 Score=85.20 Aligned_cols=221 Identities=15% Similarity=0.127 Sum_probs=134.8
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044131 342 IVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSA 421 (784)
Q Consensus 342 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 421 (784)
++|--.+...+...+.++|....|..+|++. ..|...|-+|...|+..+|..+..+-.+ -+||+..|..+...
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4555556667777888888888888888764 4677778888888888888777776665 25565555555544
Q ss_pred HhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044131 422 CAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLF 501 (784)
Q Consensus 422 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (784)
..+..- ++.|.++++....+--..|+..+ ...++++++.+.|
T Consensus 467 ~~d~s~-----------------------------------yEkawElsn~~sarA~r~~~~~~---~~~~~fs~~~~hl 508 (777)
T KOG1128|consen 467 LHDPSL-----------------------------------YEKAWELSNYISARAQRSLALLI---LSNKDFSEADKHL 508 (777)
T ss_pred ccChHH-----------------------------------HHHHHHHhhhhhHHHHHhhcccc---ccchhHHHHHHHH
Confidence 443333 44444444443322111222211 1257777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-C-C
Q 044131 502 SEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-V-E 578 (784)
Q Consensus 502 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~ 578 (784)
+.-.+.. +--..||-....+..+.++++.+.+.|..-. .+.|+ .+.|+.+-.+|.+.|+..+|...+++.- . .
T Consensus 509 e~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv---tL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~ 584 (777)
T KOG1128|consen 509 ERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV---TLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY 584 (777)
T ss_pred HHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh---hcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 7665532 2234566666666677777777777777665 44555 5666666666666666666666665541 1 2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 044131 579 PGPAVWGALLGACMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 579 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~ 611 (784)
-+..+|.+.+-....-|+++.|.+++.++..+.
T Consensus 585 ~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 585 QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred CCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 233366666666666677777777776666543
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.30 E-value=2.7e-05 Score=75.17 Aligned_cols=117 Identities=19% Similarity=0.139 Sum_probs=91.9
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHH
Q 044131 526 AGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGAC-MIHKD--TNLA 600 (784)
Q Consensus 526 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~-~~~g~--~~~a 600 (784)
.+..+++...++...+. -+.+.+.|..+...|...|++++|...+++. .+.| +..+|..+..+. ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 55566777777766532 1334778888888888888888888888876 3556 556777777764 56676 5899
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 601 RVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 601 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
..+++++++++|+++..+.+|+..+...|++++|...++.+.+.
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988763
No 111
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.30 E-value=1.1e-05 Score=72.23 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=96.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
.+..-.+...+...|++++|..+|+-.. +.| +..-|..|...|...|+++.|..+|.++..++|++|.++..++..|.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4555566777889999999999998763 566 56689999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 044131 627 AERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMR 689 (784)
Q Consensus 627 ~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 689 (784)
..|+.+.|.+-|+.... | ++ .+|+-.+|.++.+.....+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~----------~-----------~~--~~~~~~~l~~~A~~~L~~l~ 154 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR----------I-----------CG--EVSEHQILRQRAEKMLQQLS 154 (157)
T ss_pred HcCCHHHHHHHHHHHHH----------H-----------hc--cChhHHHHHHHHHHHHHHhh
Confidence 99999999999987654 2 11 45777777776666555443
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.26 E-value=2.6e-05 Score=71.15 Aligned_cols=105 Identities=16% Similarity=0.042 Sum_probs=90.2
Q ss_pred HHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 044131 534 EIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 534 ~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~ 611 (784)
.+|+..+ .+.|+ ++......+...|++++|.+.++.. ...| +...|..+..++...|+++.|...++++++++
T Consensus 14 ~~~~~al---~~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLL---SVDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHH---HcCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455444 34555 4666788999999999999999886 3555 56799999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 612 PENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 612 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|+++..+..++.+|...|++++|...++...+
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999987765
No 113
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.23 E-value=0.012 Score=62.43 Aligned_cols=170 Identities=11% Similarity=0.107 Sum_probs=94.0
Q ss_pred hHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCC-chhhHhHHHHHHHhcCCHHHHHHHHh
Q 044131 394 EEAISLFQEMQASK-VAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFES-NIYVSTALIDMYAKCGNIVEARELFD 471 (784)
Q Consensus 394 ~~A~~l~~~m~~~g-~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~ 471 (784)
+...+.++++...- +.|+ .+|...++.-.+..-++.|+.+|..+.+.+..+ +++++++++.-|+. ++.+-|.++|+
T Consensus 348 ~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 348 KKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 33444444444322 2332 455566666666666677777777776665555 66666666665553 56666666666
Q ss_pred hcCC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhHHhcC--
Q 044131 472 LMSH--KS-EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG--VTFLSVLYACSHAGLVREGDEIFQSMIHDHG-- 544 (784)
Q Consensus 472 ~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~-- 544 (784)
--.+ +| ..--+..+.-+...++-..|..+|++.+..++.||. ..|..+|.-=+.-|++....++-+++...+.
T Consensus 426 LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~ 505 (656)
T KOG1914|consen 426 LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPAD 505 (656)
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchh
Confidence 4331 22 223334445555556666666666666666555544 3466666666666666666666665554443
Q ss_pred CCCCcchHHHHHHHHHhcCCH
Q 044131 545 FKPLAEHYACMVDILGRAGQL 565 (784)
Q Consensus 545 ~~p~~~~~~~lv~~l~r~g~~ 565 (784)
..|...+-..+++.|+-.+..
T Consensus 506 qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 506 QEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hcCCCChHHHHHHHHhhcccc
Confidence 344444444555555544443
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.23 E-value=9.2e-05 Score=71.45 Aligned_cols=156 Identities=14% Similarity=0.154 Sum_probs=114.3
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 044131 454 IDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGD 533 (784)
Q Consensus 454 i~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 533 (784)
+-+|.+.|+++......+.+..+. ..|...++.++++..+++..+.. +.|...|..+...+...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 346778888777655443322221 01223566778888888877753 456667888888899999999999
Q ss_pred HHHHHhHHhcCCCCC-cchHHHHHHHH-HhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044131 534 EIFQSMIHDHGFKPL-AEHYACMVDIL-GRAGQ--LEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKL 607 (784)
Q Consensus 534 ~~~~~m~~~~~~~p~-~~~~~~lv~~l-~r~g~--~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 607 (784)
..|+... .+.|+ ...+..+..++ .+.|+ .++|.+++++. ...| +..++..|..++...|++++|+..++++
T Consensus 94 ~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 94 LAYRQAL---QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999876 44564 77777888764 67777 58999999887 3566 5668888888999999999999999999
Q ss_pred hcCCCCCcchHHHH
Q 044131 608 FELDPENVGYHVLL 621 (784)
Q Consensus 608 ~~l~p~~~~~~~~l 621 (784)
++++|.+..-+..+
T Consensus 171 L~l~~~~~~r~~~i 184 (198)
T PRK10370 171 LDLNSPRVNRTQLV 184 (198)
T ss_pred HhhCCCCccHHHHH
Confidence 99998777655444
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.22 E-value=3.5e-05 Score=74.09 Aligned_cols=134 Identities=16% Similarity=0.076 Sum_probs=106.0
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCHHHHHH
Q 044131 509 IRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL--AVEPGPAVWGA 586 (784)
Q Consensus 509 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ 586 (784)
..|+......+-.++...|+-+.+..+....... -.-+.+.....+....+.|++.+|...+++. +-+||...|+.
T Consensus 62 ~~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~~--~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~ 139 (257)
T COG5010 62 RNPEDLSIAKLATALYLRGDADSSLAVLQKSAIA--YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNL 139 (257)
T ss_pred cCcchHHHHHHHHHHHhcccccchHHHHhhhhcc--CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhH
Confidence 3454333355666777788888888877765432 1223445556888899999999999999887 35667889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 587 LLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
+..+|-+.|+.+.|...+.+++++.|.++.++.+|+-.|.-.|+.++|..+...-...
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999988776653
No 116
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.18 E-value=0.0022 Score=63.86 Aligned_cols=302 Identities=10% Similarity=0.036 Sum_probs=197.2
Q ss_pred HHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHH---HHHHhCCCchHHHHHHHHHHHcCCCCChhhHH-hHHHhhcCCCC
Q 044131 251 LVSFYSKCGEVERAELLFRDIVRPDLISCNAMI---SGYTCNGKTESSLRLFRQLLASAERVNSSTIV-GLIPVFYPFGH 326 (784)
Q Consensus 251 li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~-~ll~~~~~~~~ 326 (784)
|-+.+.-.|++.+|..-|...++-|+..|-++. ..|...|+..-|+.-|.+.++. +||-..-. .--..+.+.|.
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge 121 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE 121 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence 344455667888888888888888888887765 4688889999999888888764 66633211 11124567899
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 044131 327 LHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQAS 406 (784)
Q Consensus 327 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (784)
++.|..-|..+++..-..+ .-...+.+.--.++-.. .-..+..+.-+|+...|++....+++-
T Consensus 122 le~A~~DF~~vl~~~~s~~-----~~~eaqskl~~~~e~~~------------l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 122 LEQAEADFDQVLQHEPSNG-----LVLEAQSKLALIQEHWV------------LVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred HHHHHHHHHHHHhcCCCcc-----hhHHHHHHHHhHHHHHH------------HHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 9999999999987752211 11112222111111111 122344556678888888888887764
Q ss_pred CCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CCHH----H
Q 044131 407 KVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--KSEV----T 480 (784)
Q Consensus 407 g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~----~ 480 (784)
.+.|...+..-..+|...|.+..|+.=+..+.+.. ..+....--+-..+...|+.+.++....+..+ ||-. .
T Consensus 185 -~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~ 262 (504)
T KOG0624|consen 185 -QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF 262 (504)
T ss_pred -CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH
Confidence 23355555555667777788887776666666554 22344444556677788888888877777653 3322 1
Q ss_pred HHHH---------HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH---HHHHHHHccCCHHHHHHHHHHhHHhcCCCCC
Q 044131 481 WNTM---------ISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFL---SVLYACSHAGLVREGDEIFQSMIHDHGFKPL 548 (784)
Q Consensus 481 ~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 548 (784)
|..+ +......+++.++++..+...+.......++++ .+-..+...|.+.+|++...+.+ .+.|+
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~ 339 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPD 339 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCch
Confidence 2111 123455788889999988887754332233433 34445667889999999998887 67787
Q ss_pred -cchHHHHHHHHHhcCCHHHHHHHHHhCC
Q 044131 549 -AEHYACMVDILGRAGQLEKALEFIKGLA 576 (784)
Q Consensus 549 -~~~~~~lv~~l~r~g~~~eA~~~~~~m~ 576 (784)
+.++.--.++|.-...+++|+.=++...
T Consensus 340 dv~~l~dRAeA~l~dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 340 DVQVLCDRAEAYLGDEMYDDAIHDYEKAL 368 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 8888888889998899999999888763
No 117
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.17 E-value=8.5e-05 Score=84.85 Aligned_cols=138 Identities=12% Similarity=0.035 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHH
Q 044131 476 KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV-TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYA 553 (784)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 553 (784)
.++..+-.|.....+.|.+++|+.+++...+ +.||.. .+..+...+.+.+.+++|+...++.. ...|+ ..+..
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHH
Confidence 3577888888888999999999999999998 678765 56677888999999999999999887 44666 67788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 554 CMVDILGRAGQLEKALEFIKGLA-VEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
.+..++...|++++|.++|++.- -.|+ ..+|.++..++...|+.+.|..+|+++++...+-...|
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~ 225 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL 225 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence 88889999999999999999873 3444 66999999999999999999999999998765444443
No 118
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.00058 Score=72.08 Aligned_cols=164 Identities=18% Similarity=0.096 Sum_probs=115.1
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCH
Q 044131 453 LIDMYAKCGNIVEARELFDLMSH--KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT-FLSVLYACSHAGLV 529 (784)
Q Consensus 453 Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~ 529 (784)
+...|.+.++.+.|...|.+... ++... ..+....++++...+...- +.|+... ...=...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 34477788889999988887542 22111 1233445556655555444 3444321 22235678889999
Q ss_pred HHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 044131 530 REGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPA-VWGALLGACMIHKDTNLARVASEK 606 (784)
Q Consensus 530 ~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~ 606 (784)
..|...|.++++. .|+ ...|+.-.-+|.+.|.+.+|++=.+.. .+.|+.. .|.-=..+.....+++.|...|++
T Consensus 375 ~~Av~~YteAIkr---~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR---DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHHHHHHHHHhc---CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998854 354 788999999999999998888765544 3455543 565556677778899999999999
Q ss_pred HhcCCCCCcchHHHHHHHHHhc
Q 044131 607 LFELDPENVGYHVLLSNIYSAE 628 (784)
Q Consensus 607 ~~~l~p~~~~~~~~l~~~y~~~ 628 (784)
.++++|++..+...+...+...
T Consensus 452 ale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 452 ALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHhcCchhHHHHHHHHHHHHHh
Confidence 9999999988877777776653
No 119
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=0.0018 Score=63.13 Aligned_cols=373 Identities=15% Similarity=0.104 Sum_probs=173.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCC--CCeeeHHH-HHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhh--
Q 044131 247 VLTGLVSFYSKCGEVERAELLFRDIVR--PDLISCNA-MISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVF-- 321 (784)
Q Consensus 247 ~~~~li~~y~~~g~~~~A~~~f~~~~~--~d~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-- 321 (784)
-.+.|...|-...++..|-..++++.. |...-|.. -...+-+.+.+..|+++...|... |+...-..-+.+.
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIK 122 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHh
Confidence 344455555666666666666665533 22222221 224455667777777777776542 1111111111111
Q ss_pred cCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC----ChhHHHHHHHHHHhCCChhHHH
Q 044131 322 YPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEK----SLASWNAMIAGYTQNGLTEEAI 397 (784)
Q Consensus 322 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~ 397 (784)
-+.+++..++.+..+.-. +.+..+.+...-...+.|+.+.|.+-|+...+- ..+.||.-+..| +.|+++.|+
T Consensus 123 Yse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasAL 198 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASAL 198 (459)
T ss_pred cccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHH
Confidence 123334444433333211 122333333333444566666666666554331 334555444433 345566666
Q ss_pred HHHHHHHhCCCCCCHHHH-HHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC-
Q 044131 398 SLFQEMQASKVAPNPVTV-SSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH- 475 (784)
Q Consensus 398 ~l~~~m~~~g~~pd~~t~-~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~- 475 (784)
++..++.+.|++-.+..= .....+ .....+.....+|...+ +..+|.-...+.+.|+.+.|.+.+..|+.
T Consensus 199 k~iSEIieRG~r~HPElgIGm~teg-iDvrsvgNt~~lh~Sal-------~eAfNLKaAIeyq~~n~eAA~eaLtDmPPR 270 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEG-IDVRSVGNTLVLHQSAL-------VEAFNLKAAIEYQLRNYEAAQEALTDMPPR 270 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceecc-CchhcccchHHHHHHHH-------HHHhhhhhhhhhhcccHHHHHHHhhcCCCc
Confidence 666666666654211100 000000 00000000011111110 11233333456788999999999999984
Q ss_pred ----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC-CCCcc
Q 044131 476 ----KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGF-KPLAE 550 (784)
Q Consensus 476 ----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-~p~~~ 550 (784)
-|++|...+.-.- ..|++.+..+-+.-+.+.. +--..||..++-.|++...++.|-.++.+-..- .. -.+..
T Consensus 271 aE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Y 347 (459)
T KOG4340|consen 271 AEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPY 347 (459)
T ss_pred ccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHH
Confidence 4677765553221 2345555555555555543 234679999999999999998888876542100 00 00112
Q ss_pred hHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHH-HHHH-HhcCCHHH----HHHHHHHHhcCCCCCcchHHHHHH
Q 044131 551 HYACMVDILGRA-GQLEKALEFIKGLAVEPGPAVWGAL-LGAC-MIHKDTNL----ARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 551 ~~~~lv~~l~r~-g~~~eA~~~~~~m~~~p~~~~~~~l-l~a~-~~~g~~~~----a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
.|+ +++++.-+ -..++|++-++.+...-.. -...+ +..- .++.+-++ +..-++..+++- -.....-++
T Consensus 348 ly~-LLdaLIt~qT~pEea~KKL~~La~~l~~-kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~Ak 422 (459)
T KOG4340|consen 348 LYD-LLDALITCQTAPEEAFKKLDGLAGMLTE-KLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAK 422 (459)
T ss_pred HHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 222 34444333 3566666555443100000 00111 0100 11222222 222344444432 113445678
Q ss_pred HHHhcCChHHHHHHHHHHH
Q 044131 624 IYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 624 ~y~~~g~~~~a~~~~~~m~ 642 (784)
+|+...++..+.+.|+.-.
T Consensus 423 iyW~~~Dy~~vEk~Fr~Sv 441 (459)
T KOG4340|consen 423 IYWNLEDYPMVEKIFRKSV 441 (459)
T ss_pred hhccccccHHHHHHHHHHH
Confidence 8999999999998887543
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.08 E-value=0.00017 Score=72.32 Aligned_cols=181 Identities=15% Similarity=0.057 Sum_probs=126.7
Q ss_pred CCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCch---hhHhHHHHHHHhcCCHHHHHHHHhhcCC--CC-H---HH
Q 044131 410 PNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNI---YVSTALIDMYAKCGNIVEARELFDLMSH--KS-E---VT 480 (784)
Q Consensus 410 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~---~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~---~~ 480 (784)
.....+......+...|+++.|...++.+.+.. +.+. ..+..+...|.+.|++++|...|+.+.+ |+ . .+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345677778888899999999999999998764 2222 4667788999999999999999998863 21 1 24
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcch
Q 044131 481 WNTMISGYGLH--------GHGLEALQLFSEMLHSGIRPSGV-TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEH 551 (784)
Q Consensus 481 ~~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 551 (784)
|..+..++.+. |+.++|++.|+++... .|+.. ....+..... .. ... . ..
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~------~~~-~--------~~ 168 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LR------NRL-A--------GK 168 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HH------HHH-H--------HH
Confidence 55566666654 7889999999999985 56543 2211111100 00 000 0 11
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 044131 552 YACMVDILGRAGQLEKALEFIKGL----AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDP 612 (784)
Q Consensus 552 ~~~lv~~l~r~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p 612 (784)
...+.+.+.+.|++++|...+++. |-.| ....|..+..++...|+.++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 235667788999999999888765 3233 345888999999999999999998887766555
No 121
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=0.0011 Score=69.43 Aligned_cols=117 Identities=23% Similarity=0.193 Sum_probs=81.1
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 044131 522 ACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTN 598 (784)
Q Consensus 522 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~ 598 (784)
.....|..++|+..++.+... .|+ +..+....+.+.+.|+.++|.+.++++ ...|+ ...|-++..++.+.|+..
T Consensus 315 ~~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 315 QTYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 345567777777777776643 343 555566677777777777777777766 35565 556777777777777777
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 599 LARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 599 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
+|++..+....-+|+|+..|..|+..|...|+-.++..-+.++
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 7777777777777777777777777777777766666665444
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.08 E-value=0.0001 Score=80.16 Aligned_cols=187 Identities=16% Similarity=0.157 Sum_probs=116.2
Q ss_pred CCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044131 442 NFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLY 521 (784)
Q Consensus 442 g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 521 (784)
+++|--..-..+.+.+.++|-...|..+|++. ..|-..|-+|...|+..+|..+..+-.+ -+||+.-|..+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 44555556667888888999999999999874 4688888888888988888888887777 4788888888888
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHH
Q 044131 522 ACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKG-LAVEP-GPAVWGALLGACMIHKDTNL 599 (784)
Q Consensus 522 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~-m~~~p-~~~~~~~ll~a~~~~g~~~~ 599 (784)
..-....+++|+++++....+. -..+.....+.++++++.+.++. +.+.| -..+|-.+..+..+.++.+.
T Consensus 466 v~~d~s~yEkawElsn~~sarA--------~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISARA--------QRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHHH--------HHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 7777777777887777654320 00111112234555555555543 23333 22355555555555555555
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 600 ARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 600 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|..+|.+...++|++...+.+++-.|.+.|+-.+|....+...+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 55555555555555555555555555555555555555444433
No 123
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.07 E-value=0.036 Score=62.49 Aligned_cols=169 Identities=17% Similarity=0.149 Sum_probs=90.1
Q ss_pred HHHHHHHHhhhCchH---HHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCH----HHHHHHHHH
Q 044131 415 VSSILSACAQLGAIS---LGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSE----VTWNTMISG 487 (784)
Q Consensus 415 ~~~ll~a~~~~~~~~---~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~----~~~~~li~~ 487 (784)
.+.++..|-+.++.. +|.-+++...... +.|..+--.||..|.-.|-+..|.++|+.+.-+++ ..|- +..-
T Consensus 439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~ 516 (932)
T KOG2053|consen 439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRR 516 (932)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHH
Confidence 345566676666654 3344444444332 34555566788899999999999999998874433 2222 2234
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH---HHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 488 YGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVR---EGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQ 564 (784)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~---~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~ 564 (784)
+...|++..+...+++...-=-..-..|--.+..||. .|.+. +-..+=+++.... -.....+=+..++.+...++
T Consensus 517 ~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AYr-~g~ySkI~em~~fr~rL~~S~-q~~a~~VE~~~l~ll~~~~~ 594 (932)
T KOG2053|consen 517 AETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAYR-RGAYSKIPEMLAFRDRLMHSL-QKWACRVENLQLSLLCNADR 594 (932)
T ss_pred HHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHHH-cCchhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCc
Confidence 4556777777666665443100000112222233333 23333 3333333332110 00112233556788888999
Q ss_pred HHHHHHHHHhCCCCC--CHHHHHHH
Q 044131 565 LEKALEFIKGLAVEP--GPAVWGAL 587 (784)
Q Consensus 565 ~~eA~~~~~~m~~~p--~~~~~~~l 587 (784)
.++-...++.|..+| |.+-|..|
T Consensus 595 ~~q~~~~~~~~~l~~~e~~I~w~~L 619 (932)
T KOG2053|consen 595 GTQLLKLLESMKLPPSEDRIQWVSL 619 (932)
T ss_pred HHHHHHHHhccccCcchhhcccccc
Confidence 999888888886544 33344443
No 124
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.06 E-value=8.3e-05 Score=67.21 Aligned_cols=99 Identities=19% Similarity=0.201 Sum_probs=78.2
Q ss_pred CCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 545 FKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 545 ~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
..|+ ......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|+++..+..+
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l 91 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHA 91 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 3443 345566677777788888888887775 3344 566788888888888999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 044131 622 SNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 622 ~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+.+|...|++++|.+.++...+
T Consensus 92 a~~~~~~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 92 AECLLALGEPESALKALDLAIE 113 (135)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999998877665
No 125
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.00054 Score=66.68 Aligned_cols=302 Identities=17% Similarity=0.134 Sum_probs=164.9
Q ss_pred HHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHHH-HHHHHHhC
Q 044131 314 IVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEK--SLASWNA-MIAGYTQN 390 (784)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~-li~~~~~~ 390 (784)
+++++....+...+..+.++...-.+.. +.+..-.+.|...|....++..|-..++++... ...-|.. -...+-+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 3333433344444444444444333322 224445566677777778888888888776542 2111211 12345567
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH--hhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHH
Q 044131 391 GLTEEAISLFQEMQASKVAPNPVTVSSILSAC--AQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARE 468 (784)
Q Consensus 391 g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~--~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 468 (784)
+.+..|+.+...|... |+...-..-+.+. -+.+++..++.+.++....| +..+.+...-...|.|+.+.|.+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 7888888888877642 3322222222221 23455666666655544222 23333333444567788888888
Q ss_pred HHhhcCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 044131 469 LFDLMSH----KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHG 544 (784)
Q Consensus 469 ~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 544 (784)
-|+...+ .....||.-+. .-+.|++..|+++..++++.|++--+.. .-|..-++.. .+.+ |
T Consensus 166 kFqaAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPEl---------gIGm~tegiD-vrsv----g 230 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPEL---------GIGMTTEGID-VRSV----G 230 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCcc---------CccceeccCc-hhcc----c
Confidence 8877663 34456665443 4455778888888888887775422110 0011111100 0000 0
Q ss_pred CCCCcchHHHH-------HHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 545 FKPLAEHYACM-------VDILGRAGQLEKALEFIKGLA----VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 545 ~~p~~~~~~~l-------v~~l~r~g~~~eA~~~~~~m~----~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
.|-.-|-+.+ ...+-+.|+++.|.+-+..|| -+.|++|...+.-. -..++...+.+-..-+++++|-
T Consensus 231 -Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf 308 (459)
T KOG4340|consen 231 -NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF 308 (459)
T ss_pred -chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC
Confidence 0111122222 234457788888888888886 33466666554321 2355666677777777888887
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 614 NVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 614 ~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
-+.++..+.-+|++..-++-|..+..
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLA 334 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLA 334 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHh
Confidence 77777778888888888888877754
No 126
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.04 E-value=6.3e-06 Score=54.41 Aligned_cols=35 Identities=51% Similarity=0.734 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG 513 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 513 (784)
++||+||.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37999999999999999999999999999999983
No 127
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.04 E-value=7.4e-06 Score=54.09 Aligned_cols=34 Identities=35% Similarity=0.699 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC
Q 044131 378 ASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN 411 (784)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd 411 (784)
++||+||.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 4799999999999999999999999999999998
No 128
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.03 E-value=0.001 Score=77.53 Aligned_cols=196 Identities=14% Similarity=0.209 Sum_probs=140.2
Q ss_pred HHHHHHHHHHHhhhCchHHHHHHHHHHHHc-CCC---CchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHH
Q 044131 412 PVTVSSILSACAQLGAISLGKWVHELVKSR-NFE---SNIYVSTALIDMYAKCGNIVEARELFDLMSH--KSEVTWNTMI 485 (784)
Q Consensus 412 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~---~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li 485 (784)
...|...+.-..++++.+.|+++.+++.+. ++. --..+|.+++++-..-|.-+...++|+++.+ .-...|..|.
T Consensus 1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~ 1537 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLL 1537 (1710)
T ss_pred chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 456666777777788888888887777654 111 1234677777777777777778888888774 2234677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC---cchHHHHHHHHHhc
Q 044131 486 SGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL---AEHYACMVDILGRA 562 (784)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~lv~~l~r~ 562 (784)
..|...+.+++|.++|++|.+. +.-....|...+..+.+...-+.|..++.+..+. -|. .+...-.+++-.+.
T Consensus 1538 ~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1538 GIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhhc
Confidence 8888888888888888888875 4445566777788888888888888888877643 444 34445556667788
Q ss_pred CCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 044131 563 GQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 563 g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~ 611 (784)
|+.+.+..+|+..- .+...-.|+.++..-.+||+.+..+.+|++++++.
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 88888888887762 23345588888888888888888888888888754
No 129
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.01 E-value=0.00024 Score=75.59 Aligned_cols=228 Identities=14% Similarity=0.115 Sum_probs=142.7
Q ss_pred HHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhCchHHH
Q 044131 356 YSRLNEMEAARKLFDESSEK---SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN-PVTVSSILSACAQLGAISLG 431 (784)
Q Consensus 356 y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~~a 431 (784)
+.+.|++.+|.-.|+..... +...|--|-..-+.+++-..|+..+++-++. .|+ ...+..|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHHH
Confidence 45667777777777665433 3346666666666666666666666666543 443 33344444445555555555
Q ss_pred HHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCC
Q 044131 432 KWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEML-HSGIR 510 (784)
Q Consensus 432 ~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~ 510 (784)
...+...++...+- ... . ..+ ++...-+. ..+..........++|-++. +.+.+
T Consensus 373 l~~L~~Wi~~~p~y-~~l----~----~a~--------------~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~ 427 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKY-VHL----V----SAG--------------ENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTK 427 (579)
T ss_pred HHHHHHHHHhCccc-hhc----c----ccC--------------ccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 55555444433110 000 0 000 00000000 11111112334455555544 44544
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHH
Q 044131 511 PSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPA-VWGAL 587 (784)
Q Consensus 511 pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~l 587 (784)
+|......|.-.|.-.|.+++|...|+..+ .++|+ ...||-|...|+...+.+||+.-+++. .++|+-+ ++..|
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNl 504 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNL 504 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhh
Confidence 667777777777888899999999999887 45676 678999999999999999999999886 5888866 88999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
.-+|...|.+++|...+-.++.+.+.
T Consensus 505 gIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 505 GISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999998888877654
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.01 E-value=0.00048 Score=78.80 Aligned_cols=142 Identities=13% Similarity=0.113 Sum_probs=116.2
Q ss_pred CCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHH
Q 044131 443 FESNIYVSTALIDMYAKCGNIVEARELFDLMS--HK-SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT-FLS 518 (784)
Q Consensus 443 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ 518 (784)
++.++..+-.|.......|.+++|..+++... .| +...+..+..++.+.+++++|+..+++.... .|+..+ ...
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~ 159 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILL 159 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 45668888889999999999999999999887 35 4568888999999999999999999999984 676655 555
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHH
Q 044131 519 VLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLG 589 (784)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~ 589 (784)
+..++.+.|.+++|..+|++.... .|+ ...+..+..+|-..|+.++|...|++.- ..|....|+.++.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~---~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 230 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQ---HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence 667888999999999999999852 344 7788889999999999999999998862 4555555555544
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.96 E-value=0.0016 Score=68.28 Aligned_cols=145 Identities=17% Similarity=0.147 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSV-LYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMV 556 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv 556 (784)
..+-...-.+...|++++|+..++.++.. .||...|..+ ...+...++.++|.+.++.+. ...|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal---~l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKAL---ALDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH---hcCCCccHHHHHHH
Confidence 33444444556779999999999998874 5666665554 457889999999999999998 45677 45566778
Q ss_pred HHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 044131 557 DILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQA 634 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 634 (784)
++|.+.|+.++|...+++.. .+-|+..|..|..+|...|+..++..+. +..|+..|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHH
Confidence 89999999999999998863 4557889999999999999998887764 4567889999999
Q ss_pred HHHHHHHHhCC
Q 044131 635 ATVRQVVKKRK 645 (784)
Q Consensus 635 ~~~~~~m~~~~ 645 (784)
.......+++.
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 99888777644
No 132
>PLN02789 farnesyltranstransferase
Probab=97.93 E-value=0.0054 Score=63.75 Aligned_cols=209 Identities=11% Similarity=0.062 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044131 347 SVLTALSTVYSRLNEMEAARKLFDESSEK---SLASWNAMIAGYTQNG-LTEEAISLFQEMQASKVAPNPVTVSSILSAC 422 (784)
Q Consensus 347 ~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 422 (784)
.++..+-..+...+..++|..+.+.+... +..+|+..-..+...| ++++++..++++.....+ +...+..--..+
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l 116 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHH
Confidence 35666677778889999999999986643 4457877767777777 579999999999876322 222333222222
Q ss_pred hhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHH
Q 044131 423 AQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQ 499 (784)
Q Consensus 423 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 499 (784)
...+.. ..+++...++.+. .+|..+|+-..-.+...|++++|++
T Consensus 117 ~~l~~~---------------------------------~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 117 EKLGPD---------------------------------AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred HHcCch---------------------------------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHH
Confidence 222221 0123333343333 3566677777777777777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcc---CC----HHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhc----CCHHH
Q 044131 500 LFSEMLHSGIRPSGVTFLSVLYACSHA---GL----VREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRA----GQLEK 567 (784)
Q Consensus 500 ~~~~m~~~g~~pd~~t~~~ll~a~~~~---g~----~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~----g~~~e 567 (784)
.++++++.+.. |...|+.....+.+. |. .++..++...++. +.|+ ...|+-+..+|... ++..+
T Consensus 164 ~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~---~~P~N~SaW~Yl~~ll~~~~~~l~~~~~ 239 (320)
T PLN02789 164 YCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAIL---ANPRNESPWRYLRGLFKDDKEALVSDPE 239 (320)
T ss_pred HHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHH---hCCCCcCHHHHHHHHHhcCCcccccchh
Confidence 77777775432 333444433333333 21 2456666655552 3454 66677777777663 34456
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 044131 568 ALEFIKGL-AVEP-GPAVWGALLGACMI 593 (784)
Q Consensus 568 A~~~~~~m-~~~p-~~~~~~~ll~a~~~ 593 (784)
|.+++.+. ...| ++.....|+..+..
T Consensus 240 ~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 240 VSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 77776664 2344 34466666666653
No 133
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.001 Score=64.21 Aligned_cols=153 Identities=12% Similarity=0.015 Sum_probs=95.9
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044131 451 TALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAG 527 (784)
Q Consensus 451 ~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 527 (784)
.-+-..|.-.|+-+.+..+..... ..|....+..+....+.|++.+|+..|++..... +||..+++.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 444555556666666666665543 2344555556677777777777777777776642 556667777777777777
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 044131 528 LVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLAV-EP-GPAVWGALLGACMIHKDTNLARVAS 604 (784)
Q Consensus 528 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~~-~p-~~~~~~~ll~a~~~~g~~~~a~~~~ 604 (784)
+.++|..-|.+..+ +.|+ ...++.|.-.|.-.|+++.|..++...-. .+ |..+-..|.-+-...|+++.|+.+.
T Consensus 149 r~~~Ar~ay~qAl~---L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALE---LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHH---hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 77777777776653 3333 44566666666667777777777665532 22 5556666666666677777776665
Q ss_pred HHH
Q 044131 605 EKL 607 (784)
Q Consensus 605 ~~~ 607 (784)
.+-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 553
No 134
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.89 E-value=0.00044 Score=73.18 Aligned_cols=122 Identities=15% Similarity=0.119 Sum_probs=101.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 044131 516 FLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMI 593 (784)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~ 593 (784)
..+++..+...+++++|.++|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+......|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 445677778888999999999998754 354 4556788888888888999988776 2334 56677777778899
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 594 HKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 594 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
.++.+.|..+++++.++.|++-..|..|+.+|...|+|++|......+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988775
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.87 E-value=0.0015 Score=75.63 Aligned_cols=234 Identities=12% Similarity=0.131 Sum_probs=149.1
Q ss_pred CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-HHhhhCchHHHHHHHHHHHHcCCCCchhhHhH
Q 044131 374 EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILS-ACAQLGAISLGKWVHELVKSRNFESNIYVSTA 452 (784)
Q Consensus 374 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~-a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~ 452 (784)
..+...|..|+..|...+++++|.++.+..... .|+...+..++. .+.+.+....+..+ .
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 346678999999999999999999999976654 666554433332 34445554444444 2
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044131 453 LIDMYAKCGNIVEARELFDLMSH--KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVR 530 (784)
Q Consensus 453 Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 530 (784)
+++...+..++.-..-+.+.|.+ .+-.+.-.+..+|.+.|+.++|..+|+++++.. +-|....+.+...++.. +++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 22222222222222222222221 233366678888888899999999999888865 44566777888888888 888
Q ss_pred HHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----------------------CCCCCHHHHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL----------------------AVEPGPAVWGALL 588 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m----------------------~~~p~~~~~~~ll 588 (784)
+|.+++...+.. |....++.++.+++.++ ....-..+|--|-
T Consensus 167 KA~~m~~KAV~~----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 167 KAITYLKKAIYR----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHHH----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 888888877643 33333444444444433 1222233445555
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044131 589 GACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 646 (784)
.-|+..++++.+..+++.+++.+|.|.....-|+..|. +++.+-..+-+.++-.|+
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~--~kY~~~~~~ee~l~~s~l 286 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK--EKYKDHSLLEDYLKMSDI 286 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH--HHccCcchHHHHHHHhcc
Confidence 67788899999999999999999999888888888877 555444433344443333
No 136
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.84 E-value=2.7e-05 Score=50.97 Aligned_cols=33 Identities=36% Similarity=0.611 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP 511 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 511 (784)
.+||++|.+|++.|+.+.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 578888888888888888888888888888777
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.83 E-value=0.00037 Score=73.73 Aligned_cols=127 Identities=16% Similarity=0.134 Sum_probs=102.1
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044131 449 VSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGL 528 (784)
Q Consensus 449 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 528 (784)
...+|+..+...++++.|..+|+++.+.+...+-.|+..+...++-.+|++++++..+.. +-|...+..-...|...++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 344566667778899999999999987666666778888888889999999999998742 3344455555566888999
Q ss_pred HHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 044131 529 VREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLAVEP 579 (784)
Q Consensus 529 ~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p 579 (784)
.+.|+++.+++. .+.|+ ..+|..|+..|...|++++|+..++.+|+-|
T Consensus 250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 999999999987 55676 6699999999999999999999999998544
No 138
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.81 E-value=2.6e-05 Score=51.04 Aligned_cols=34 Identities=18% Similarity=0.394 Sum_probs=31.2
Q ss_pred eeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCC
Q 044131 276 LISCNAMISGYTCNGKTESSLRLFRQLLASAERV 309 (784)
Q Consensus 276 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 309 (784)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
No 139
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=0.0032 Score=60.33 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=114.0
Q ss_pred HHHhcCCHHHHHHHHhhcCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044131 456 MYAKCGNIVEARELFDLMSH-----KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVR 530 (784)
Q Consensus 456 ~y~k~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 530 (784)
+-.-+|+.+.|...++.+.. +-+.-..+| -+-..|++++|+++++..++.. +.|.+++..=+...-..|.--
T Consensus 61 AAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l 137 (289)
T KOG3060|consen 61 AALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNL 137 (289)
T ss_pred HHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcH
Confidence 33445666666666655442 122222222 2445788999999999999876 667788887777777788888
Q ss_pred HHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHK---DTNLARVASE 605 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g---~~~~a~~~~~ 605 (784)
+|++-+....+ .+..|.+.|.-+.++|...|+++.|.-.++++- +.| ++..+..|.......| |++.+...++
T Consensus 138 ~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~ 215 (289)
T KOG3060|consen 138 EAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYE 215 (289)
T ss_pred HHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 89888888876 456788999999999999999999999999874 566 4556666666655544 7889999999
Q ss_pred HHhcCCCCCc
Q 044131 606 KLFELDPENV 615 (784)
Q Consensus 606 ~~~~l~p~~~ 615 (784)
+++++.|.+.
T Consensus 216 ~alkl~~~~~ 225 (289)
T KOG3060|consen 216 RALKLNPKNL 225 (289)
T ss_pred HHHHhChHhH
Confidence 9999999643
No 140
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=97.72 E-value=0.00076 Score=60.82 Aligned_cols=114 Identities=16% Similarity=0.187 Sum_probs=86.1
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 044131 500 LFSEMLHSGIRPSG-VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-A 576 (784)
Q Consensus 500 ~~~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~ 576 (784)
+|++... ..|+. .....+...+...|++++|.+.|+..... .| +...+..+...+.+.|++++|...+++. .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 79 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY---DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAA 79 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555 34543 34556667778888888888888887643 34 4677788888888889999999888776 3
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 577 VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 577 ~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
..| +...|..+...+...|+.+.|...++++++++|++....
T Consensus 80 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 80 LDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred cCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 344 566888888889999999999999999999999876543
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=0.019 Score=55.71 Aligned_cols=165 Identities=15% Similarity=0.046 Sum_probs=99.1
Q ss_pred HHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044131 435 HELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV 514 (784)
Q Consensus 435 ~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 514 (784)
.+.+.......+......-...|.+.|++++|.+..+....-+....|. ..+.+..+.+-|.+.+++|.+- -+..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~V--qI~lk~~r~d~A~~~lk~mq~i---ded~ 170 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENLEAAALNV--QILLKMHRFDLAEKELKKMQQI---DEDA 170 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHHHHHHHHHcc---chHH
Confidence 3334433333333333333445677777777777766633333333332 2234445566666666666652 2344
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACM 592 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~ 592 (784)
|.+-|..++ |....-.+.+.+|.-+|++|. ..|++.+.+-.+.+|.
T Consensus 171 tLtQLA~aw--------------------------------v~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 171 TLTQLAQAW--------------------------------VKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHH--------------------------------HHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHH
Confidence 444444433 222233345566666666662 5677777777888888
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 044131 593 IHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAAT 636 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 636 (784)
..|++++|+.+.+.++..+|.+|.+...+.-.--..|+-.++..
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence 88899999999999998888888888877777677777766543
No 142
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.00065 Score=66.83 Aligned_cols=99 Identities=22% Similarity=0.256 Sum_probs=71.9
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPA-VWGALLGACMIHKDTNL 599 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~ 599 (784)
..+.+++++|+..|...+ .+.|+ ...|..=..+|.+.|.++.|++=.+.. .+.|... +|..|.-|+...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 345667777777777665 45665 444444566777777777777766654 4666644 89999999999999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHH
Q 044131 600 ARVASEKLFELDPENVGYHVLLSNI 624 (784)
Q Consensus 600 a~~~~~~~~~l~p~~~~~~~~l~~~ 624 (784)
|++.|+++++++|++..+...|..+
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~A 192 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIA 192 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHH
Confidence 9999999999999988666555433
No 143
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.59 E-value=7.1e-05 Score=47.71 Aligned_cols=31 Identities=35% Similarity=0.731 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 044131 378 ASWNAMIAGYTQNGLTEEAISLFQEMQASKV 408 (784)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 408 (784)
++||+||.+|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
No 144
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.59 E-value=0.0018 Score=59.20 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=40.3
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 044131 557 DILGRAGQLEKALEFIKGLA-VEPGP----AVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDY 631 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m~-~~p~~----~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 631 (784)
..+...|++++|...++... ..||. ..+..|...+...|+++.|...++.. .-.|-.+..+.+++++|.+.|++
T Consensus 56 ~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 56 KAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCH
Confidence 44444455555555544432 11221 13333444455555555555555442 22233344555666666666666
Q ss_pred HHHHHHHH
Q 044131 632 LQAATVRQ 639 (784)
Q Consensus 632 ~~a~~~~~ 639 (784)
++|...++
T Consensus 135 ~~A~~~y~ 142 (145)
T PF09976_consen 135 DEARAAYQ 142 (145)
T ss_pred HHHHHHHH
Confidence 66666654
No 145
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.58 E-value=0.01 Score=68.85 Aligned_cols=167 Identities=14% Similarity=0.088 Sum_probs=101.3
Q ss_pred hhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCC
Q 044131 312 STIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNG 391 (784)
Q Consensus 312 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 391 (784)
..+..++..+...++++.+.++....++.. +.....+-.+...|...++.+++..+ .++.......
T Consensus 32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~~~~~ 97 (906)
T PRK14720 32 KELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSFSQNL 97 (906)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhccccc
Confidence 345555555556666666666655444332 12222222222244444444433332 2222223333
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHh
Q 044131 392 LTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFD 471 (784)
Q Consensus 392 ~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 471 (784)
++.-...+...|... .-+...+..+..+|.+.|..+++..+++.+++.. +.|+.+.|-+...|+.. ++++|.+++.
T Consensus 98 ~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 98 KWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred chhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 332222233333331 2233567777888888999999999999999887 67888999999999998 9999998877
Q ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044131 472 LMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHS 507 (784)
Q Consensus 472 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (784)
+.. .-|...+++.++.+++.++...
T Consensus 174 KAV-----------~~~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 174 KAI-----------YRFIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHH-----------HHHHhhhcchHHHHHHHHHHhc
Confidence 643 3366777888888888888874
No 146
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.58 E-value=7.9e-05 Score=47.48 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=26.6
Q ss_pred eeHHHHHHHHHhCCCchHHHHHHHHHHHcCC
Q 044131 277 ISCNAMISGYTCNGKTESSLRLFRQLLASAE 307 (784)
Q Consensus 277 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 307 (784)
++||+||++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4789999999999999999999999988764
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.56 E-value=0.00062 Score=56.26 Aligned_cols=92 Identities=21% Similarity=0.224 Sum_probs=73.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 044131 552 YACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAER 629 (784)
Q Consensus 552 ~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 629 (784)
+..+...+.+.|++++|.+++++. ...| +..+|..+...+...|+++.|...++++++..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 445666777788888888888775 2344 34577777788888899999999999999999988888889999999999
Q ss_pred ChHHHHHHHHHHHh
Q 044131 630 DYLQAATVRQVVKK 643 (784)
Q Consensus 630 ~~~~a~~~~~~m~~ 643 (784)
++++|.+.+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999888776543
No 148
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.55 E-value=0.00098 Score=70.89 Aligned_cols=98 Identities=19% Similarity=0.199 Sum_probs=49.4
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 044131 521 YACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDT 597 (784)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~ 597 (784)
......|++++|.++|+..++ +.|+ ...|..+..+|.+.|++++|+..+++. .+.| +...|..+..+|...|++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 334455556666665555552 2333 344444555555555555555555444 2333 233455555555555555
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHH
Q 044131 598 NLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 598 ~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
+.|+..++++++++|+++.....+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 555555555555555555444444
No 149
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.52 E-value=0.00023 Score=55.60 Aligned_cols=64 Identities=27% Similarity=0.182 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHHHh
Q 044131 580 GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAER-DYLQAATVRQVVKK 643 (784)
Q Consensus 580 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-~~~~a~~~~~~m~~ 643 (784)
++.+|..+...+...|+++.|+..++++++++|+++..+..++.+|...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999 79999998876543
No 150
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.51 E-value=0.2 Score=53.57 Aligned_cols=210 Identities=12% Similarity=0.067 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcC---CHHHHHHHHhhcC----CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044131 429 SLGKWVHELVKSRNFESNIYVSTALIDMYAKCG---NIVEARELFDLMS----HKSEVTWNTMISGYGLHGHGLEALQLF 501 (784)
Q Consensus 429 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g---~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (784)
+++..+++..+..-...+..+|.++.+---..- ..+..-..+++.. ..-..+|-..+..-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 445556666554433334444544443211111 1333333444333 122346777777777777789999999
Q ss_pred HHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC---C
Q 044131 502 SEMLHSGIRPSG-VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA---V 577 (784)
Q Consensus 502 ~~m~~~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~---~ 577 (784)
.+..+.+..+-. ....+++. |.-+++.+-|..+|+.=.+.+|-.| +--.+.+|-|.+.++-..|..+|++.. +
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 999999888833 34444444 5557889999999998887765443 445678899999999999999999872 3
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 578 EPG--PAVWGALLGACMIHKDTNLARVASEKLFELDPENV----GYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 578 ~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
.|+ ..+|..+|.--..-||+.....+-++.+..-|.+- ..-.++.+-|.-.+....-..-++.|
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 454 34999999999999999999998888776555211 13345666777777766555444444
No 151
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.50 E-value=0.021 Score=55.39 Aligned_cols=137 Identities=12% Similarity=0.125 Sum_probs=89.6
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCC-C
Q 044131 399 LFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHK-S 477 (784)
Q Consensus 399 l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-~ 477 (784)
+.+.+.......|......-...|...++++.|........ +......=+..+.|..+++-|.+.++.|.+- +
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ide 168 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDE 168 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccch
Confidence 44444444444444444444455677777777776655411 2222222234456777888888888888764 3
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 044131 478 EVTWNTMISGYGL----HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHD 542 (784)
Q Consensus 478 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 542 (784)
-.+.+.|..++.. .+...+|.-+|++|-++ .+|+..+.+....+|...|++++|..+++....+
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4466666666543 34577888888888765 6888888888888888888888888888887754
No 152
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.50 E-value=0.00012 Score=59.80 Aligned_cols=78 Identities=23% Similarity=0.280 Sum_probs=55.5
Q ss_pred cCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 044131 562 AGQLEKALEFIKGL----AVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATV 637 (784)
Q Consensus 562 ~g~~~eA~~~~~~m----~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 637 (784)
.|++++|+.+++++ |..|+...|-.+..++...|+++.|..++++ .+.+|.++....+++.+|...|+|++|.++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 35666666666665 2122455666677788888888888888888 777777777777888888889999988888
Q ss_pred HHH
Q 044131 638 RQV 640 (784)
Q Consensus 638 ~~~ 640 (784)
++.
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 764
No 153
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.0024 Score=65.27 Aligned_cols=265 Identities=10% Similarity=-0.010 Sum_probs=156.7
Q ss_pred HHHHhcCCHHHHHHHHhhc---CCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhhCchH
Q 044131 354 TVYSRLNEMEAARKLFDES---SEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN-PVTVSSILSACAQLGAIS 429 (784)
Q Consensus 354 ~~y~~~g~~~~A~~~f~~~---~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a~~~~~~~~ 429 (784)
+.+.+...+.+|.+.+... -..++.-|..-...|...|++++|+--.++-.+ ++|. ..+..-.-..+..+++..
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHHHH
Confidence 4555556666666655432 223455566666666666777666655544433 2232 123333333444444444
Q ss_pred HHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC-----CCCHHHHHHHH-HHHHHcCCHHHHHHHHHH
Q 044131 430 LGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS-----HKSEVTWNTMI-SGYGLHGHGLEALQLFSE 503 (784)
Q Consensus 430 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li-~~~~~~g~~~~A~~~~~~ 503 (784)
+|.+.+..- ..+ ....|+..++... +|...+|-.+- .++...|++++|...--.
T Consensus 135 ~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ 194 (486)
T KOG0550|consen 135 EAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID 194 (486)
T ss_pred HHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence 444443310 000 1112222222222 13334444442 345667888888777666
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcch-------------HHHHHHHHHhcCCHHHHHH
Q 044131 504 MLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEH-------------YACMVDILGRAGQLEKALE 570 (784)
Q Consensus 504 m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~-------------~~~lv~~l~r~g~~~eA~~ 570 (784)
.++.. ..+......=-.++...++.+.|...|++.+ .+.|+-.. +.-=..-..+.|++.+|.+
T Consensus 195 ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 195 ILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred HHhcc-cchhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 55532 1111111111123445667788888887765 44554221 1112244568899999999
Q ss_pred HHHhC-C-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 571 FIKGL-A-----VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 571 ~~~~m-~-----~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
.+... . .+|++..|.....+..+.|+.++|..-.+.+++++|.-...|..-++.|...++|++|.+-++...+.
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99775 3 44556677777788889999999999999999999999999999999999999999999988776553
No 154
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.47 E-value=0.084 Score=53.99 Aligned_cols=236 Identities=19% Similarity=0.201 Sum_probs=155.4
Q ss_pred CCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHH
Q 044131 390 NGLTEEAISLFQEMQASKVAPN--PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEAR 467 (784)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~ 467 (784)
.|+++.|.+-|+.|... |. ..-+..+.-..-+.|+.+.++++-+..-..- +.-.....+++...+..|+++.|+
T Consensus 133 eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHH
Confidence 47777777777777641 21 1122233333456788888887777665543 334567788889999999999999
Q ss_pred HHHhhcC-----CCCHH--HHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHH
Q 044131 468 ELFDLMS-----HKSEV--TWNTMISGYGL---HGHGLEALQLFSEMLHSGIRPSGVT-FLSVLYACSHAGLVREGDEIF 536 (784)
Q Consensus 468 ~~f~~~~-----~~~~~--~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~ 536 (784)
++.+.-. ++|+. .--.|+.+-+. ..+...|...-.+..+ +.||-+- -..-..++.+.|++.+|-.++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 9988654 45543 33334443322 2445566665555554 6777654 334456889999999999999
Q ss_pred HHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 044131 537 QSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL----AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 537 ~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m----~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~ 611 (784)
+.+- ..+|.+..+...+ ..|.|+ .+.+-+++. .++|| .....++..+....|++..|..-++.+...+
T Consensus 287 E~aW---K~ePHP~ia~lY~--~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 287 ETAW---KAEPHPDIALLYV--RARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHH---hcCCChHHHHHHH--HhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 9886 4567776664433 345554 222222222 24665 4467777788889999999999999999999
Q ss_pred CCCcchHHHHHHHHHhc-CChHHHHHHHH
Q 044131 612 PENVGYHVLLSNIYSAE-RDYLQAATVRQ 639 (784)
Q Consensus 612 p~~~~~~~~l~~~y~~~-g~~~~a~~~~~ 639 (784)
|. .+.|.+|+++-... |+-.++.....
T Consensus 360 pr-es~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 360 PR-ESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred ch-hhHHHHHHHHHhhccCchHHHHHHHH
Confidence 98 46899999997665 77666655443
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.46 E-value=0.0014 Score=57.33 Aligned_cols=59 Identities=17% Similarity=-0.082 Sum_probs=28.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 584 WGALLGACMIHKDTNLARVASEKLFELDPEN---VGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
+..+..++...|+++.|...++.++...|++ +..+..++.+|...|++++|.+.++.+.
T Consensus 42 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 103 (119)
T TIGR02795 42 HYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVI 103 (119)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 3334444444555555555555555444443 2334445555555555555555544443
No 156
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.46 E-value=0.0041 Score=69.11 Aligned_cols=140 Identities=14% Similarity=0.054 Sum_probs=69.6
Q ss_pred CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcc--------CCHHHHHHHHHHhH
Q 044131 475 HKSEVTWNTMISGYGLH-----GHGLEALQLFSEMLHSGIRPSGV-TFLSVLYACSHA--------GLVREGDEIFQSMI 540 (784)
Q Consensus 475 ~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~--------g~~~~a~~~~~~m~ 540 (784)
..|...|...+.|.... +....|+.+|++..+ ..||.. .+..+..++... ..+..+.+..+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45677777777775432 226688889998888 467653 233222222111 01122222222211
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc
Q 044131 541 HDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVG 616 (784)
Q Consensus 541 ~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 616 (784)
.......+...|..+.-.....|++++|...+++. .+.|+...|..+...+...|+.++|...+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 10011112334444444444455555555555554 24555555555555555555555555555555555555554
No 157
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.45 E-value=0.0063 Score=55.61 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--cchHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG----VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL--AEHYA 553 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~ 553 (784)
.|..++..+ ..++...+...++++.... |+. .....+...+...|++++|...|+..... .-.|. ....-
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 444555555 3677788888888887753 332 23334556677788888888888888754 22222 12344
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 554 CMVDILGRAGQLEKALEFIKGLAVEP-GPAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
.+...+...|++++|+..++..+-.+ .+..+..+...+...|+.+.|+..|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 46777888888888888887764222 34466667778888899999988888763
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.38 E-value=0.0022 Score=56.17 Aligned_cols=103 Identities=12% Similarity=0.082 Sum_probs=61.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHH
Q 044131 516 FLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEPG----PAVWGALLG 589 (784)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~----~~~~~~ll~ 589 (784)
+..+...+...|++++|.+.|+.+.+.+.-.|. ...+..+..++.+.|++++|.+.++... ..|+ ..+|..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 334444455555666666666555533211111 2344446666666666666666666542 2232 446777777
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 590 ACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 590 a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
++...|+.+.|...++++++..|+++...
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 77888888888888888888888876543
No 159
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.37 E-value=0.0065 Score=57.13 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHH
Q 044131 478 EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS--GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYAC 554 (784)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 554 (784)
...|..+...+...|++++|+..|++.......|. ..++..+...+.+.|+.++|..+++...+ +.|+ ...+..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~---~~~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE---RNPFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCcHHHHHH
Confidence 45677777788888999999999988876432222 24677777888888888888888887763 3443 344555
Q ss_pred HHHHHH-------hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 555 MVDILG-------RAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 555 lv~~l~-------r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
+...+. +.|++++|... .+.|...++++++.+|++
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~-------------------------~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAW-------------------------FDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHH-------------------------HHHHHHHHHHHHHhCccc
Confidence 555555 34444444333 345677788888888864
No 160
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.36 E-value=0.00057 Score=52.55 Aligned_cols=57 Identities=25% Similarity=0.204 Sum_probs=45.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 587 LLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+...+...|+++.|+..++++++.+|+++..+..++.++...|++++|...++...+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445667788888888888888888888888888888888888888888888877654
No 161
>PRK15331 chaperone protein SicA; Provisional
Probab=97.34 E-value=0.003 Score=57.17 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=80.4
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHH
Q 044131 544 GFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVL 620 (784)
Q Consensus 544 ~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 620 (784)
|+.++ .+..-....-+-..|++++|..+|+-+- ..| +..-|..|...|...++++.|...|..+..++++||.++..
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44444 2222333444557899999999987652 233 55578999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 044131 621 LSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 621 l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.+..|...|+.+.|.+-+....+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999887654
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.33 E-value=0.0041 Score=58.73 Aligned_cols=130 Identities=13% Similarity=0.100 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHH
Q 044131 477 SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS--GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYA 553 (784)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~ 553 (784)
....+..+...|...|++++|+..|++.......|+ ...+..+...+.+.|++++|..++++..+ +.|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344667777777888888888888888876443332 35677777788888888888888888764 3443 45566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 554 CMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERD 630 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 630 (784)
.+..++...|+...+..-.+.. ...++.|...++++++++|++ |..+.+.+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6666777777665554333221 123677889999999999986 5555555655554
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.32 E-value=0.0019 Score=68.73 Aligned_cols=103 Identities=14% Similarity=0.131 Sum_probs=81.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcC
Q 044131 485 ISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAG 563 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g 563 (784)
...+...|++++|+++|++.++.. +-+...|..+..++...|++++|...++..++ +.|+ ...|..+..+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~---l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE---LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcCCHHHHHHHHHHHHHhC
Confidence 445667899999999999999853 33566788888899999999999999999874 4564 677888899999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 044131 564 QLEKALEFIKGL-AVEPGPAVWGALLGAC 591 (784)
Q Consensus 564 ~~~eA~~~~~~m-~~~p~~~~~~~ll~a~ 591 (784)
++++|...+++. .+.|+......++..|
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999886 4666655444444443
No 164
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.018 Score=55.45 Aligned_cols=149 Identities=15% Similarity=0.173 Sum_probs=115.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHH
Q 044131 481 WNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSV-LYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDI 558 (784)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~l-l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~ 558 (784)
|..++-+....|+.+.|...++++... + |...-...+ ..-+...|++++|.+++++++++ .|+ ..+|--=+-+
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d---dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED---DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc---CcchhHHHHHHHHH
Confidence 344455566778999999999998886 3 544322222 12245689999999999999865 354 5566666667
Q ss_pred HHhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 044131 559 LGRAGQLEKALEFIKGL--AVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQA 634 (784)
Q Consensus 559 l~r~g~~~eA~~~~~~m--~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 634 (784)
+-..|+--+|++-+... .+..|...|.-|...|...|+++.|.-.+++++=+.|.++..+..++.++...|--+..
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~ 207 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENL 207 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHH
Confidence 77778777888777665 36789999999999999999999999999999999999999999999999887764443
No 165
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.28 E-value=0.54 Score=53.50 Aligned_cols=65 Identities=18% Similarity=0.157 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 044131 583 VWGALLGACMIHKDT---NLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~---~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 647 (784)
+-+.|+..|++.++. -+|+-+.|..+..+|.|...-..|..+|.-.|-...|.++++.+.-+.|.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ 505 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQ 505 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhh
Confidence 344555666665543 34445556666666666666666666666666666666666666544443
No 166
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.25 E-value=0.0016 Score=64.21 Aligned_cols=88 Identities=15% Similarity=0.091 Sum_probs=78.0
Q ss_pred HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 044131 556 VDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQ 633 (784)
Q Consensus 556 v~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 633 (784)
.+-+.+.+++++|+..+.+. .+.| |++.|..=..||.+.|.++.|.+..+.++.++|.....|..|+-+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 34567889999999999876 5666 667777888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 044131 634 AATVRQVVKK 643 (784)
Q Consensus 634 a~~~~~~m~~ 643 (784)
|.+.+++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999876554
No 167
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.25 E-value=0.22 Score=51.78 Aligned_cols=107 Identities=19% Similarity=0.218 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCch
Q 044131 349 LTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAI 428 (784)
Q Consensus 349 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~ 428 (784)
.+..+.-+...|+...|.++-.+..-++-.-|-..|.+|+..+++++-.++-.. +-.++-|..++.+|...|..
T Consensus 180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 344455566788999999999999888999999999999999999877665332 22347788899999999998
Q ss_pred HHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHh
Q 044131 429 SLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFD 471 (784)
Q Consensus 429 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~ 471 (784)
.+|..+...+ .+..-+.+|.+||++.+|.+.--
T Consensus 254 ~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 254 KEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHH
Confidence 8888776651 22567889999999999877633
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.24 E-value=0.0019 Score=60.77 Aligned_cols=92 Identities=13% Similarity=-0.099 Sum_probs=72.6
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
...|..++..+...|++++|+..+++. .+.|+ +.+|..+...+...|+.++|...++++++++|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 445566666777778888888887765 23332 3488899999999999999999999999999999999999999
Q ss_pred HHH-------hcCChHHHHHHHHH
Q 044131 624 IYS-------AERDYLQAATVRQV 640 (784)
Q Consensus 624 ~y~-------~~g~~~~a~~~~~~ 640 (784)
+|. ..|++++|...++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHH
Confidence 999 78888866655543
No 169
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.24 E-value=0.00022 Score=46.38 Aligned_cols=32 Identities=34% Similarity=0.469 Sum_probs=30.6
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 044131 604 SEKLFELDPENVGYHVLLSNIYSAERDYLQAA 635 (784)
Q Consensus 604 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 635 (784)
++++++++|+++.+|..|+.+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 68999999999999999999999999999986
No 170
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.20 E-value=0.00082 Score=52.18 Aligned_cols=51 Identities=24% Similarity=0.274 Sum_probs=37.9
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 593 IHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..|+++.|...++++++.+|+++..+..++.+|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777778888888888888777777888888888888888777765543
No 171
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.20 E-value=0.37 Score=50.06 Aligned_cols=121 Identities=14% Similarity=0.138 Sum_probs=88.0
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044131 451 TALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVR 530 (784)
Q Consensus 451 ~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 530 (784)
+.-|.-+...|+...|.++-.+..-||-.-|-..+.+|+..+++++-.++... +-.++-|...+.+|...|..+
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHH
Confidence 33455566778899999998888888999999999999999999876664332 223477888889999999999
Q ss_pred HHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGAC 591 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~ 591 (784)
+|..+...+. +.--+.+|.++|.+.+|.+.--+. .|...+..+..-|
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~---kd~~~L~~i~~~~ 301 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKE---KDIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHc---CCHHHHHHHHHHC
Confidence 9988887631 245678888999998887765442 2444444444443
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.20 E-value=0.003 Score=59.64 Aligned_cols=80 Identities=15% Similarity=0.066 Sum_probs=59.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC-CCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGLA-VEP---G-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIY 625 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p---~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 625 (784)
.+..+...+.+.|++++|...+++.- ..| + ...|..+...+...|+++.|...++++++..|+++..+..++.+|
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 44555555666666666666665541 122 1 357888888889999999999999999999999999999999999
Q ss_pred HhcCC
Q 044131 626 SAERD 630 (784)
Q Consensus 626 ~~~g~ 630 (784)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 88877
No 173
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.17 E-value=0.086 Score=57.13 Aligned_cols=193 Identities=16% Similarity=0.155 Sum_probs=107.2
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHH
Q 044131 354 TVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKW 433 (784)
Q Consensus 354 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 433 (784)
+.++-.|.+.+|-++|. ++|....|+++|..|+-- -...-+...|..++-+.
T Consensus 640 ~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKm 691 (1081)
T KOG1538|consen 640 DVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKM 691 (1081)
T ss_pred HHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHH
Confidence 34455677777777765 456677777777776521 12223344455544444
Q ss_pred HHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 044131 434 VHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG 513 (784)
Q Consensus 434 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 513 (784)
+.+.-.+ +..++.--.+-..|+...|+.++|..+. +.+|-.+-++++-+++-. .+.
T Consensus 692 L~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW~d~lidI~rkld~----~er 747 (1081)
T KOG1538|consen 692 LIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGWVDMLIDIARKLDK----AER 747 (1081)
T ss_pred HHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhh------------------hcccHHHHHHHHHhhcch----hhh
Confidence 4332221 1112212234456677778887776653 234444445554444322 233
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHH-HHHHH----
Q 044131 514 VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEPGPA-VWGAL---- 587 (784)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~-~~~~l---- 587 (784)
.+...+..-+-+...+.-|-++|.+|-. ...++++....|+++||..+-++.| +.||+. -|...
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAEN 817 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhh
Confidence 3444444444455566677778877742 2457788888888888888888887 555543 22211
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHh
Q 044131 588 ------LGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 588 ------l~a~~~~g~~~~a~~~~~~~~ 608 (784)
-.|+.+.|+..+|.++++++.
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLt 844 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLT 844 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 135556666666666666654
No 174
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.12 E-value=0.0013 Score=50.44 Aligned_cols=61 Identities=23% Similarity=0.340 Sum_probs=49.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 555 MVDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 555 lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
+...+.+.|++++|.+.+++. ...|+ ...|..+..++...|+++.|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677889999999998886 35564 55899999999999999999999999999999875
No 175
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.11 E-value=0.01 Score=60.80 Aligned_cols=136 Identities=12% Similarity=0.133 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA-CSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVD 557 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 557 (784)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 468888888888888999999999998543 3344455554444 344667777999999998765 345677889999
Q ss_pred HHHhcCCHHHHHHHHHhCC--CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch
Q 044131 558 ILGRAGQLEKALEFIKGLA--VEPG---PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGY 617 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m~--~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 617 (784)
.+.+.|+.+.|..+|++.- +.++ ..+|...+.--..+|+++....+.+++.+.-|++...
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHH
Confidence 9999999999999999862 2332 3599999999999999999999999999988885433
No 176
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0045 Score=61.52 Aligned_cols=101 Identities=23% Similarity=0.182 Sum_probs=86.7
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 547 PLAEHYACMVDILGRAGQLEKALEFIKGLA-VE-PGPAVWGALLGACMIH---KDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 547 p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~-p~~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
-|.+.|--|...|.+.|++++|..-|.+.- +. +++..+..+..++... ....++..+++++++++|+|.....+|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 358999999999999999999999998763 44 4566787777766543 356889999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCc
Q 044131 622 SNIYSAERDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 622 ~~~y~~~g~~~~a~~~~~~m~~~~~~ 647 (784)
+-.+...|++.+|...++.|.+....
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPA 259 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999885544
No 177
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.04 E-value=0.011 Score=65.86 Aligned_cols=145 Identities=16% Similarity=0.118 Sum_probs=102.5
Q ss_pred CCCCCCHHHHHHHHHHHHccC-----CHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhc--------CCHHHHHHHH
Q 044131 507 SGIRPSGVTFLSVLYACSHAG-----LVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRA--------GQLEKALEFI 572 (784)
Q Consensus 507 ~g~~pd~~t~~~ll~a~~~~g-----~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~--------g~~~eA~~~~ 572 (784)
.+.+.|...|...+.+..+.. ..++|..+|++.+ .+.|+ ...|..+...+... ++++.+.+..
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 345677788888888755432 3778999999988 55788 44555444333221 2344555555
Q ss_pred HhC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 044131 573 KGL---A-VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAK 648 (784)
Q Consensus 573 ~~m---~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k 648 (784)
++. + ...++.+|.++.-.....|++++|...++++++++|+ ...|.+++.+|...|+.++|...++........
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~- 485 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG- 485 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-
Confidence 542 2 2335678888877777889999999999999999994 789999999999999999999998776553322
Q ss_pred CCcccEEE
Q 044131 649 APGCTLIE 656 (784)
Q Consensus 649 ~~g~s~i~ 656 (784)
.|.+-|+|
T Consensus 486 ~pt~~~~~ 493 (517)
T PRK10153 486 ENTLYWIE 493 (517)
T ss_pred CchHHHHH
Confidence 23444543
No 178
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.02 E-value=0.0061 Score=50.07 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 481 WNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|.++|+...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 61 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666532 2223444445555555555555555555544
No 179
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.01 E-value=0.0019 Score=50.98 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=48.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...+...++++.|..+++++++++|+++..+...+.+|...|++++|.+.++..-+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35677889999999999999999999999999999999999999999998887765
No 180
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.95 E-value=0.017 Score=52.75 Aligned_cols=102 Identities=18% Similarity=0.244 Sum_probs=66.9
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--Cc
Q 044131 541 HDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL---AVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPE--NV 615 (784)
Q Consensus 541 ~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m---~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~--~~ 615 (784)
++..+.|+..+--.|...+.+.|+..||...+++. ++.-|+...-.+..+....++...|...++++.+.+|. .|
T Consensus 81 ~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p 160 (251)
T COG4700 81 EELAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP 160 (251)
T ss_pred HHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC
Confidence 33455566666666777777777777777777665 24556666666777777777777777777777776653 34
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 616 GYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 616 ~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
....+++..|+..|+.++|+.-++...
T Consensus 161 d~~Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 161 DGHLLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred CchHHHHHHHHhcCCchhHHHHHHHHH
Confidence 456666777777777777766665544
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.94 E-value=0.0012 Score=51.23 Aligned_cols=63 Identities=24% Similarity=0.412 Sum_probs=40.1
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 561 RAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 561 r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
..|++++|+++++++ ...| +..++..+..++...|++++|+..++++...+|+++.++.+++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 456666666666665 2233 45566667777777777777777777777777776666655554
No 182
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=96.70 E-value=0.004 Score=50.71 Aligned_cols=80 Identities=16% Similarity=0.288 Sum_probs=46.8
Q ss_pred cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHH
Q 044131 491 HGHGLEALQLFSEMLHSGI-RPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKA 568 (784)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA 568 (784)
.|++++|+.+|+++.+... .|+...+..+..++.+.|++++|..+++. . ...|+ ....-.+...|.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 5677777777777777432 12344445566777777777777777766 2 22232 23333446666777777777
Q ss_pred HHHHHh
Q 044131 569 LEFIKG 574 (784)
Q Consensus 569 ~~~~~~ 574 (784)
++.+++
T Consensus 78 i~~l~~ 83 (84)
T PF12895_consen 78 IKALEK 83 (84)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 776654
No 183
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.70 E-value=0.034 Score=59.45 Aligned_cols=120 Identities=14% Similarity=0.076 Sum_probs=80.0
Q ss_pred CCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHc--CCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC----CCHHH
Q 044131 407 KVAPNPVTVSSILSACAQLGAISLGKWVHELVKSR--NFESNIYVSTALIDMYAKCGNIVEARELFDLMSH----KSEVT 480 (784)
Q Consensus 407 g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~--g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----~~~~~ 480 (784)
+.+.+...+..++..+.+..+++.+..++-..... ....-..+..++|..|.+.|..+.+..+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556666777777777777777777666665544 2222233445777777777777777777765442 67777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044131 481 WNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHA 526 (784)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 526 (784)
+|.||..+.+.|++..|.++..+|..++...+..|+.--+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777777777777677777776666666554
No 184
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.70 E-value=1.1 Score=49.58 Aligned_cols=127 Identities=13% Similarity=0.097 Sum_probs=75.2
Q ss_pred CCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCh----hhHHhHHHHHhcccchhHHHH
Q 044131 156 FSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDS----TSVAAVLPAVAEVQELRLGME 231 (784)
Q Consensus 156 ~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~----~t~~~ll~a~~~~~~~~~a~~ 231 (784)
.|++++|++++-.+..||.. |..+.+-|++-...++++. ||-..|. ..|..+-..++....++.|.+
T Consensus 747 ~g~feeaek~yld~drrDLA-----ielr~klgDwfrV~qL~r~----g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDLA-----IELRKKLGDWFRVYQLIRN----GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhhhh-----HHHHHhhhhHHHHHHHHHc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58899999999999888753 5566677777766666543 1222222 255566666666666666666
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHH
Q 044131 232 IQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQ 301 (784)
Q Consensus 232 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~ 301 (784)
.+.+.-. ...+++.|.+...+++-+.+-+.+++. ....-.|...+...|.-++|.+.|-+
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~Lpe~-s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTLPED-SELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhcCcc-cchHHHHHHHHHhhchHHHHHHHHHh
Confidence 6544311 123455555555555555555555543 23344566666777777777666543
No 185
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.68 E-value=0.94 Score=46.56 Aligned_cols=96 Identities=11% Similarity=0.158 Sum_probs=52.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhc-CCCCC--cch
Q 044131 481 WNTMISGYGLHGHGLEALQLFSEMLHSGIRP-----SGV-TFLSVLYACSHAGLVREGDEIFQSMIHDH-GFKPL--AEH 551 (784)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----d~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-~~~p~--~~~ 551 (784)
+..+...+.+.|++++|+++|++....-... +.. .|...+-.+...|+...|.+.|+...... ++..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 3445666778888888888888877643221 111 23334445666788888888888765221 12222 223
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHhCC
Q 044131 552 YACMVDILGR--AGQLEKALEFIKGLA 576 (784)
Q Consensus 552 ~~~lv~~l~r--~g~~~eA~~~~~~m~ 576 (784)
...|++++-. ...+++|..-|+++.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 3444555432 235566666666653
No 186
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.66 E-value=0.014 Score=55.23 Aligned_cols=98 Identities=17% Similarity=0.247 Sum_probs=74.8
Q ss_pred HHHHhhc--CCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-------------
Q 044131 467 RELFDLM--SHKSEVTWNTMISGYGLH-----GHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHA------------- 526 (784)
Q Consensus 467 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~------------- 526 (784)
...|+.. ..+|-.++..++..|.+. |..+=....+..|.+-|+.-|..+|+.||..+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 456777788888777654 66777777788888888888888888888876542
Q ss_pred ---CCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCH
Q 044131 527 ---GLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQL 565 (784)
Q Consensus 527 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~ 565 (784)
.+.+-|++++++|. .+|+.||.+++..+++.+|+.+..
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~p 154 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSHP 154 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccHH
Confidence 23466889999994 679999999999999999887753
No 187
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.59 E-value=0.29 Score=51.28 Aligned_cols=159 Identities=17% Similarity=0.068 Sum_probs=98.6
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCC---CH----HHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044131 453 LIDMYAKCGNIVEARELFDLMSHK---SE----VTWNTMISGYGL---HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522 (784)
Q Consensus 453 Li~~y~k~g~~~~A~~~f~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 522 (784)
|+-.|-...+++...++.+.+... ++ ..-....-++.+ .|+.++|++++..+....-.++..||..+...
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 333467777777777777777642 11 112223344455 68888888888886666667777777666554
Q ss_pred HHc---------cCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHH----HHHHHH---Hh----CC-C--CC
Q 044131 523 CSH---------AGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLE----KALEFI---KG----LA-V--EP 579 (784)
Q Consensus 523 ~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~----eA~~~~---~~----m~-~--~p 579 (784)
|-. ....++|.+.|.+. +.+.|+..+--.++-++..+|.-. |..++. .. -+ . ..
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 421 22467777777743 466676544444444555555322 222222 11 11 2 23
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 580 GPAVWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 580 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
|--.+.+++.++...||.+.|.+++++++++.|..
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 44566889999999999999999999999998763
No 188
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=96.59 E-value=0.12 Score=53.04 Aligned_cols=93 Identities=20% Similarity=0.171 Sum_probs=51.2
Q ss_pred HHHcc-CCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC---C-----CCCHH-HHHHH
Q 044131 522 ACSHA-GLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALEFIKGLA---V-----EPGPA-VWGAL 587 (784)
Q Consensus 522 a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m~---~-----~p~~~-~~~~l 587 (784)
.|... |++++|.++|+...+-+.-... ...+..+.+++.+.|++++|.+++++.. . +.+.. .+-..
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a 202 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKA 202 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 34444 5666666666655443322221 3345566777888888888888887652 1 11111 12222
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
+-.+...||...|...+++..+.+|.-
T Consensus 203 ~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 203 ILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 224455788888999999888888743
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.56 E-value=0.054 Score=47.12 Aligned_cols=91 Identities=15% Similarity=0.184 Sum_probs=67.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHH
Q 044131 484 MISGYGLHGHGLEALQLFSEMLHSGIRPS--GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILG 560 (784)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~pd--~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~ 560 (784)
+..++-..|+.++|+.+|++....|.... ...+..+.+++...|++++|..+|+.....+.-.+ +......+...+.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 45567788999999999999999887665 34677888899999999999999999886542211 1122233445778
Q ss_pred hcCCHHHHHHHHHh
Q 044131 561 RAGQLEKALEFIKG 574 (784)
Q Consensus 561 r~g~~~eA~~~~~~ 574 (784)
..|+.+||.+.+-.
T Consensus 87 ~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 87 NLGRPKEALEWLLE 100 (120)
T ss_pred HCCCHHHHHHHHHH
Confidence 88999998887643
No 190
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.53 E-value=0.037 Score=46.45 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhC--------chHHHHHHHHHHHHcCCCCchhh
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKV-APNPVTVSSILSACAQLG--------AISLGKWVHELVKSRNFESNIYV 449 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd~~t~~~ll~a~~~~~--------~~~~a~~i~~~~~~~g~~~~~~~ 449 (784)
+-...|..+...+++.....+|+.+.+.|+ .|+..+|+.+|.+.++.. .+-....+++.++..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445566677777999999999999999999 999999999999887653 34456778888888899999999
Q ss_pred HhHHHHHHHh
Q 044131 450 STALIDMYAK 459 (784)
Q Consensus 450 ~~~Li~~y~k 459 (784)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988877665
No 191
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.51 E-value=0.071 Score=54.68 Aligned_cols=126 Identities=15% Similarity=0.084 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHH
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSA-CAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMY 457 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a-~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 457 (784)
+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..||+...+. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34455555555555555555555555322 1111222221111 22234555566666666654 455666777777777
Q ss_pred HhcCCHHHHHHHHhhcCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 458 AKCGNIVEARELFDLMSH--K----SEVTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 458 ~k~g~~~~A~~~f~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
.+.|+.+.|+.+|++... + -...|...+.-=.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777653 1 234777777777777777777777777776
No 192
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.51 E-value=0.0036 Score=43.59 Aligned_cols=42 Identities=24% Similarity=0.250 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 582 AVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 582 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
.+|..+..++...|+.+.|+++++++++.+|+|+..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 468889999999999999999999999999999998887764
No 193
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=2.1 Score=48.04 Aligned_cols=336 Identities=13% Similarity=0.056 Sum_probs=181.1
Q ss_pred CCCCChhhHHh-----HHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC---hHHHHHHHhcCCC--C
Q 044131 205 GTWLDSTSVAA-----VLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGE---VERAELLFRDIVR--P 274 (784)
Q Consensus 205 g~~pd~~t~~~-----ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~---~~~A~~~f~~~~~--~ 274 (784)
|++.+..-|.. ++.-+...+.+..|.++-..+-..-... ..++.....-+.+..+ -+-+..+=+++.. .
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~ 505 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT 505 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC
Confidence 55555554443 4555556667777777766553221122 5677777777776633 3334444455544 6
Q ss_pred CeeeHHHHHHHHHhCCCchHHHHHHHHHHHcC----CCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHH
Q 044131 275 DLISCNAMISGYTCNGKTESSLRLFRQLLASA----ERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLT 350 (784)
Q Consensus 275 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~ 350 (784)
+.++|..+..--.+.|+.+-|..+++.=...+ +-.+..-+...+.-+...|+.+...++.-++.+.-... .+
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s---~l- 581 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRS---SL- 581 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHH---HH-
Confidence 67788888888888999998888876432221 11223334555666666777766666655554321100 00
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-CChhHHHHHHHHHHhCCChhHHHHHHH--HH----HhCCCCCCHHHHHHHHHHHh
Q 044131 351 ALSTVYSRLNEMEAARKLFDESSE-KSLASWNAMIAGYTQNGLTEEAISLFQ--EM----QASKVAPNPVTVSSILSACA 423 (784)
Q Consensus 351 ~Li~~y~~~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~--~m----~~~g~~pd~~t~~~ll~a~~ 423 (784)
+.-..+.-.|..+|...-. .|..+ +-+ +-+.++-.+++.-|. .. ...|..|+. ...-++|+
T Consensus 582 -----~~~l~~~p~a~~lY~~~~r~~~~~~---l~d-~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a 649 (829)
T KOG2280|consen 582 -----FMTLRNQPLALSLYRQFMRHQDRAT---LYD-FYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFA 649 (829)
T ss_pred -----HHHHHhchhhhHHHHHHHHhhchhh---hhh-hhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHh
Confidence 0011122223333333211 11110 111 112222222222221 10 012333333 33344455
Q ss_pred hhCchHHHHHH----------HHHHH-HcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC
Q 044131 424 QLGAISLGKWV----------HELVK-SRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHG 492 (784)
Q Consensus 424 ~~~~~~~a~~i----------~~~~~-~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 492 (784)
+......+.+. .+.+. +.|....-.+.+--+.-+..-|+..+|.++-.+..-||-..|-.=+.+++..+
T Consensus 650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~ 729 (829)
T KOG2280|consen 650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIK 729 (829)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhh
Confidence 44432221111 11111 12222222223333445566788899999988888888888888888899888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 044131 493 HGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFI 572 (784)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~ 572 (784)
++++-+++-+.+. .++-|.-...+|.+.|+.+||.+|+.+.. |. .-.+.+|.+.|++.+|.++-
T Consensus 730 kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l-------~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 730 KWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GL-------QEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---Ch-------HHHHHHHHHhccHHHHHHHH
Confidence 8887666555443 14556667888999999999998887653 11 14678888899988888765
Q ss_pred H
Q 044131 573 K 573 (784)
Q Consensus 573 ~ 573 (784)
-
T Consensus 794 ~ 794 (829)
T KOG2280|consen 794 A 794 (829)
T ss_pred H
Confidence 3
No 194
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.48 E-value=0.0046 Score=48.04 Aligned_cols=64 Identities=28% Similarity=0.324 Sum_probs=50.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHhcCCC
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHK-DTNLARVASEKLFELDP 612 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~l~p 612 (784)
...|..+...+.+.|++++|+..|++. .+.|+ +.+|..+..++...| +.++|...++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456667777788888888888888765 34554 558888888999999 79999999999999888
No 195
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.45 E-value=0.3 Score=47.46 Aligned_cols=167 Identities=13% Similarity=0.055 Sum_probs=116.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC--CChh--------HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 044131 349 LTALSTVYSRLNEMEAARKLFDESSE--KSLA--------SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSI 418 (784)
Q Consensus 349 ~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~--------~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 418 (784)
+++|.+.|.-..-+++-...|+.-.. ..+. .-+.++..+.-.|.+.-.+.++.+.++...+-++.....+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 45555555555445555555544322 2222 3356667777778888889999999987666788888888
Q ss_pred HHHHhhhCchHHHHHHHHHHHHcCCCCchh-----hHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHH
Q 044131 419 LSACAQLGAISLGKWVHELVKSRNFESNIY-----VSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGL 490 (784)
Q Consensus 419 l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~-----~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~ 490 (784)
.+.-.+.|+.+.+...++.+.+..-..+.. +.......|.-..++..|...|++++. .|++.-|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 888899999999999999887654333333 333344456677889999999988874 466666665556666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044131 491 HGHGLEALQLFSEMLHSGIRPSGVTFL 517 (784)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~pd~~t~~ 517 (784)
.|+..+|++..+.|.+. .|...+-.
T Consensus 299 lg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred HHHHHHHHHHHHHHhcc--CCccchhh
Confidence 79999999999999984 55554444
No 196
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.41 E-value=0.055 Score=48.91 Aligned_cols=92 Identities=12% Similarity=0.029 Sum_probs=69.8
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044131 452 ALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGL 528 (784)
Q Consensus 452 ~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 528 (784)
++..-+...|++++|.++|+-+. ..+..-|-.|..++...|++++|+..|....... +-|+..+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 44445567788888888888765 2356678888888888888888888888888754 3456677778888888888
Q ss_pred HHHHHHHHHHhHHhcC
Q 044131 529 VREGDEIFQSMIHDHG 544 (784)
Q Consensus 529 ~~~a~~~~~~m~~~~~ 544 (784)
.+.|++.|+..+...+
T Consensus 119 ~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 119 VCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888887765433
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.11 Score=50.40 Aligned_cols=188 Identities=11% Similarity=-0.082 Sum_probs=131.7
Q ss_pred chhHHHHHHHHHHhCCCCChhhHhHHHHHhhCCCChhHHHHHhccCC--CCCcc--------hHHHHHHHHhcCCCchhH
Q 044131 22 QSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSIP--KPDLF--------LFNVIIRGFSNNEMPKSS 91 (784)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~--~~~~~--------~~~~li~~~~~~g~~~~a 91 (784)
+..-+.+|+.+.... .+-+++|.+.|.-...+++-.+.|+.-. +..+. .-+.+++.+.-.|.+.-.
T Consensus 121 PFsmR~lhAe~~~~l----gnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS 196 (366)
T KOG2796|consen 121 PFSMRILHAELQQYL----GNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLS 196 (366)
T ss_pred cHHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhh
Confidence 445678898886432 2337889888887777777777776533 22233 335566677777888888
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhC-----CCCchhHHHHHHHHhhcCCChHHHHHHh
Q 044131 92 ICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSG-----YGSDLFVGAALVDLYFKFSWVKSARKVF 166 (784)
Q Consensus 92 ~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g-----~~~d~~~~~~li~~y~~~g~~~~A~~~f 166 (784)
+. ++...++...+.++.....+.+.--+.||.+.+...++.+.+.. .+....+.......|.-..++..|.+.|
T Consensus 197 ~d-~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~ 275 (366)
T KOG2796|consen 197 VD-AYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFF 275 (366)
T ss_pred HH-HHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHH
Confidence 88 88888886666777777888888889999999999999887653 3333344444445566678888999999
Q ss_pred ccCCCC---CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHH
Q 044131 167 DKMPEK---DTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVL 217 (784)
Q Consensus 167 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll 217 (784)
++++.+ |.+.-|.-.-+..-.|+..+|++..+.|.+ ..|...+-.+++
T Consensus 276 ~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~---~~P~~~l~es~~ 326 (366)
T KOG2796|consen 276 TEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ---QDPRHYLHESVL 326 (366)
T ss_pred hhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc---cCCccchhhhHH
Confidence 988865 455556555555566889999999999985 456666555443
No 198
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.38 E-value=0.013 Score=61.85 Aligned_cols=64 Identities=13% Similarity=-0.085 Sum_probs=47.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch---HHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 580 GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGY---HVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 580 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+...|..+..++...|++++|...++++++++|+++.. |.+++.+|+..|+.++|...++...+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35577777777777777777777777777777777643 77777777777777777777666554
No 199
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=96.35 E-value=0.038 Score=59.09 Aligned_cols=80 Identities=13% Similarity=0.068 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhc
Q 044131 280 NAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRL 359 (784)
Q Consensus 280 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~ 359 (784)
.++|..|.+.|..++++.+++.=..-|+-||.+|++.++..+.+.|++..|.++...|...+...+..++..-+..+.++
T Consensus 107 ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 107 HALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 35555555555555555555555555566666666666666666666666655555555555444444444444444444
No 200
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.34 E-value=0.3 Score=48.77 Aligned_cols=52 Identities=12% Similarity=-0.023 Sum_probs=30.7
Q ss_pred HHHhcCCHHHHHHHHhhcCCCCh---hH---HHHHHHHHHhCCChhHHHHHHHHHHhC
Q 044131 355 VYSRLNEMEAARKLFDESSEKSL---AS---WNAMIAGYTQNGLTEEAISLFQEMQAS 406 (784)
Q Consensus 355 ~y~~~g~~~~A~~~f~~~~~~~~---~~---~~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (784)
.+.+.|++++|.+.|+.+....+ .. .-.+..+|.+.+++++|...|++..+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34556777777777776653211 11 223445566677777777777777654
No 201
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=96.31 E-value=0.075 Score=44.63 Aligned_cols=81 Identities=20% Similarity=0.202 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCC--------HHHHHHHHHHhHHhcCCCCCcc
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGI-RPSGVTFLSVLYACSHAGL--------VREGDEIFQSMIHDHGFKPLAE 550 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~t~~~ll~a~~~~g~--------~~~a~~~~~~m~~~~~~~p~~~ 550 (784)
+-...|..+...|++.....+|+.++..|+ -|+..+|+.+|.+-.+... +-+.+.+|+.|+.. +++|+.+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~e 105 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDE 105 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHH
Confidence 334456666667999999999999999999 8999999999988766432 44567788888754 7889999
Q ss_pred hHHHHHHHHHh
Q 044131 551 HYACMVDILGR 561 (784)
Q Consensus 551 ~~~~lv~~l~r 561 (784)
+|+.++..+.+
T Consensus 106 tYnivl~~Llk 116 (120)
T PF08579_consen 106 TYNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHHH
Confidence 99888877654
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.26 E-value=0.086 Score=50.04 Aligned_cols=116 Identities=19% Similarity=0.244 Sum_probs=76.5
Q ss_pred CCCHHHHHHHHHHHhh-----hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHH
Q 044131 409 APNPVTVSSILSACAQ-----LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNT 483 (784)
Q Consensus 409 ~pd~~t~~~ll~a~~~-----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~ 483 (784)
..|..+|..++..+.+ .|..+-....+..|.+.|+..|..+|+.|++.+=| |.+- -..+|+.+ |
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~-------F-- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAE-------F-- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHH-------h--
Confidence 3455666666666543 35566666677788888888888899988887765 3322 11111111 1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHh
Q 044131 484 MISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGL-VREGDEIFQSM 539 (784)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~~~~~m 539 (784)
. -...+-+-|++++++|...|+-||..|+..|+..+.+.+. +.+.++..--|
T Consensus 113 --~--hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWm 165 (228)
T PF06239_consen 113 --M--HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWM 165 (228)
T ss_pred --c--cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 0 1124567799999999999999999999999999877664 23334443334
No 203
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.18 E-value=0.38 Score=48.02 Aligned_cols=174 Identities=11% Similarity=0.031 Sum_probs=100.0
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC--CCH-HH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-
Q 044131 453 LIDMYAKCGNIVEARELFDLMSH--KSE-VT---WNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSH- 525 (784)
Q Consensus 453 Li~~y~k~g~~~~A~~~f~~~~~--~~~-~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~- 525 (784)
....+.+.|++++|.+.|+.+.. |+. .. .-.++.+|-+.+++++|+..|++..+.-..-..+-+...+.+.++
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 34455667888888888887763 222 11 233456667778888888888888774322122333333333321
Q ss_pred -cC---------------C---HHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 044131 526 -AG---------------L---VREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGA 586 (784)
Q Consensus 526 -~g---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ 586 (784)
.+ + ..+|...|+.+++.| |+ +....+|...+..+.-.--..- -.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y---P~-------------S~ya~~A~~rl~~l~~~la~~e-~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY---PN-------------SQYTTDATKRLVFLKDRLAKYE-LS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC---cC-------------ChhHHHHHHHHHHHHHHHHHHH-HH
Confidence 00 1 123334444444332 32 3333444433322210000000 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 587 LLGACMIHKDTNLARVASEKLFELDPENV---GYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...-|.+.|++.-|..-++.+++--|+.+ .....+.+.|...|.-++|.++.+.+..
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 33457788999999999999998777654 4567888999999999999998876643
No 204
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.16 E-value=2.7 Score=46.11 Aligned_cols=182 Identities=15% Similarity=0.114 Sum_probs=127.5
Q ss_pred chhhHhHHHHHHHhcCCHHHHHHHHhhcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044131 446 NIYVSTALIDMYAKCGNIVEARELFDLMSHK---SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522 (784)
Q Consensus 446 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 522 (784)
+...|..-++.-.+.|+.+.+.-.|+...-| =...|--.+.-....|+.+-|-.++....+--++-.+.+-..-..-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 4567778888888899999999999887643 2235555555555558888888877776664444444443333344
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKAL---EFIKGL-AVEPGPAVWGALLG-----ACM 592 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~---~~~~~m-~~~p~~~~~~~ll~-----a~~ 592 (784)
+...|+.+.|..+++.+.+++ |+ ++.-.--+...-|.|.++.+. +++... +.+-+..+...+.- -+.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~ 452 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYK 452 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHH
Confidence 677899999999999998764 66 334444566778899999888 555543 23333333333322 345
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 593 IHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERD 630 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 630 (784)
..++.+.|..++.++.+..|++...|..+.++....+.
T Consensus 453 i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 453 IREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 67899999999999999999999999999998777663
No 205
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.16 E-value=0.12 Score=45.02 Aligned_cols=106 Identities=18% Similarity=0.091 Sum_probs=64.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCC---chhhHhHHHHHH
Q 044131 383 MIAGYTQNGLTEEAISLFQEMQASKVAPN--PVTVSSILSACAQLGAISLGKWVHELVKSRNFES---NIYVSTALIDMY 457 (784)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~---~~~~~~~Li~~y 457 (784)
+..++-..|+.++|+.+|++....|.... ...+..+-+++..+|++++|..+++...... +. +..+...+...+
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34556677888888888888888776554 2345556667777888888888887776542 21 222222333455
Q ss_pred HhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 044131 458 AKCGNIVEARELFDLMSHKSEVTWNTMISGYG 489 (784)
Q Consensus 458 ~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~ 489 (784)
...|+.++|.+.+-...-++...|.--|..|+
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777665544344444444444443
No 206
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.15 E-value=0.33 Score=44.63 Aligned_cols=129 Identities=13% Similarity=0.049 Sum_probs=87.5
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC-CCcchHHHHHHHHHhcCCHHHHHHHHHhCC------CCCCH
Q 044131 509 IRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFK-PLAEHYACMVDILGRAGQLEKALEFIKGLA------VEPGP 581 (784)
Q Consensus 509 ~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~-p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~------~~p~~ 581 (784)
..|....-..|..+....|+..||...|++... |+- -|....-.+..+....++..+|...+++.. -.||
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd- 161 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD- 161 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC-
Confidence 355555566667777777777777777776653 433 335555556666666777777777776641 2333
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 582 AVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 582 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
..-.+..++...|..+.|+..++.++.--|+ +..-...+..++++|+.+++..-...+-
T Consensus 162 -~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 162 -GHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred -chHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 3344667788889999999999999988876 5556667788899998888776554443
No 207
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.14 E-value=0.035 Score=55.95 Aligned_cols=92 Identities=15% Similarity=0.101 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---cchHHHHHH
Q 044131 552 YACMVDILGRAGQLEKALEFIKGLA-VEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPEN---VGYHVLLSN 623 (784)
Q Consensus 552 ~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~ 623 (784)
|..-++++.+.|++++|...|+.+. ..|+ +.++..|..++...|+++.|...++++++..|++ +..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 4444444444566666665555441 2222 2345556666667777777777777777666554 334455566
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 044131 624 IYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 624 ~y~~~g~~~~a~~~~~~m~~ 643 (784)
+|...|++++|.++++...+
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777665543
No 208
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.11 E-value=0.015 Score=45.70 Aligned_cols=65 Identities=22% Similarity=0.305 Sum_probs=52.4
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 557 DILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
..|.+.+++++|.+.++++ ...| ++..|......+...|+++.|...++++++..|+++......
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~ 69 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALR 69 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence 4677888999999998887 3555 455788888888999999999999999999999887665443
No 209
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=3.3 Score=46.49 Aligned_cols=117 Identities=14% Similarity=0.125 Sum_probs=92.5
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 044131 508 GIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGAL 587 (784)
Q Consensus 508 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~l 587 (784)
|..-...|.+-.+.-+.+.|...+|.++-.... .||...|--=+.+|+..+++++-+++-+++. .+.-|.-.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 334455566777888889999999998876653 5888888888899999999999999988863 24567778
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 640 (784)
..+|.+.|+.++|....-+.-.+ .-...+|.+.|++.+|.+.--.
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 89999999999999887665332 2577889999999999987543
No 210
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.06 E-value=1.1 Score=49.17 Aligned_cols=200 Identities=15% Similarity=0.115 Sum_probs=104.3
Q ss_pred hHHhHHHHHhcccchhHHHHH--HHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhC
Q 044131 212 SVAAVLPAVAEVQELRLGMEI--QCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCN 289 (784)
Q Consensus 212 t~~~ll~a~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~ 289 (784)
.|...=+||.+.+++.--+-+ +..+.+.|-.|+... +.+.++-.|.+.+|-++|.+ +
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~ 658 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------S 658 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------c
Confidence 344455566665555443333 344556666666543 34556667888888888754 5
Q ss_pred CCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHH
Q 044131 290 GKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLF 369 (784)
Q Consensus 290 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f 369 (784)
|.-..|+++|..|+-- -..+-+...|..++-+.+...-... ..++.--.+-..|....|+.++|..+.
T Consensus 659 G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~ 726 (1081)
T KOG1538|consen 659 GHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAAAEMLISAGEHVKAIEIC 726 (1081)
T ss_pred CchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhh
Confidence 6667777777666421 0111222233333222222111100 001111122334444455555554432
Q ss_pred hhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhh
Q 044131 370 DESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYV 449 (784)
Q Consensus 370 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~ 449 (784)
..+|-.+-+.++=+++- ..+..++..+-.-+-++..+..|-+||..+-..
T Consensus 727 ------------------~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-------- 776 (1081)
T KOG1538|consen 727 ------------------GDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-------- 776 (1081)
T ss_pred ------------------hcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHHhccH--------
Confidence 22333333333333322 223445555555555667777788887766532
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCC
Q 044131 450 STALIDMYAKCGNIVEARELFDLMSH 475 (784)
Q Consensus 450 ~~~Li~~y~k~g~~~~A~~~f~~~~~ 475 (784)
.+++++....+++.+|..+-++.++
T Consensus 777 -ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 777 -KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred -HHHhhheeecccchHhHhhhhhCcc
Confidence 3678888889999999999888885
No 211
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.02 E-value=0.11 Score=47.44 Aligned_cols=107 Identities=19% Similarity=0.109 Sum_probs=71.3
Q ss_pred HHccCCHHHHHHHHHHhHHhcCC--CCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGF--KPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLA 600 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a 600 (784)
....|+.+.+.+.++.+..-|.= -|+... ..........++++- ..+...++..+...|+++.|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~~----~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLRELY----LDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHHH----HHHHHHHHHHHHHTT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCHHHH
Confidence 34566777777777776654421 122111 122223333333321 23566777788899999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 601 RVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 601 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...+++++..+|.+...|..+..+|...|+..+|.++++.++.
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987753
No 212
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.78 E-value=0.07 Score=55.23 Aligned_cols=84 Identities=31% Similarity=0.234 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCE
Q 044131 581 PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGT 660 (784)
Q Consensus 581 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~ 660 (784)
..++..|...+.+.+++..|....+++++++|+|.-....-+.+|...|.++.|...++++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k----------------- 319 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK----------------- 319 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH-----------------
Confidence 346777888888999999999999999999999999999999999999999999999998876
Q ss_pred EEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 044131 661 PHVFTSGDQLHPQSTAIYAMLEKLNGKMRE 690 (784)
Q Consensus 661 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 690 (784)
..|..+.|...|..|..++++
T Consensus 320 ---------~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 320 ---------LEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred ---------hCCCcHHHHHHHHHHHHHHHH
Confidence 346677888888777777665
No 213
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=95.67 E-value=0.13 Score=51.84 Aligned_cols=33 Identities=12% Similarity=-0.043 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
.|..+...+...|+.+.|...++++++..|++.
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 444455566678888888888888888888764
No 214
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.66 E-value=0.065 Score=55.00 Aligned_cols=256 Identities=13% Similarity=0.024 Sum_probs=143.3
Q ss_pred HHhCCChhHHHHHHHHHHhCCCC---CCHHHHHHHHHHHhhhCchHHHHHHHHHHH--Hc--CC-CCchhhHhHHHHHHH
Q 044131 387 YTQNGLTEEAISLFQEMQASKVA---PNPVTVSSILSACAQLGAISLGKWVHELVK--SR--NF-ESNIYVSTALIDMYA 458 (784)
Q Consensus 387 ~~~~g~~~~A~~l~~~m~~~g~~---pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~--~~--g~-~~~~~~~~~Li~~y~ 458 (784)
+++.|+.+..+.+|+...+.|-. .=...|+.+-++|.-++++++|.++|..=+ .. |- .-.......|.+.+-
T Consensus 27 Lck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlK 106 (639)
T KOG1130|consen 27 LCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLK 106 (639)
T ss_pred HHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhh
Confidence 56667777777777777665521 112345555566666677777777665322 11 00 001112222333344
Q ss_pred hcCCHHHHHHHHhhcC-------C--CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH---
Q 044131 459 KCGNIVEARELFDLMS-------H--KSEVTWNTMISGYGLHGH--------------------GLEALQLFSEMLH--- 506 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~-------~--~~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~~--- 506 (784)
-.|.+++|.-.-.+-. . -....+-.+...|-..|+ .+.|.++|.+=++
T Consensus 107 v~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 107 VKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred hhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555543322111 0 011233334444433331 2234444443221
Q ss_pred -CCC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHh---HHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-----
Q 044131 507 -SGI-RPSGVTFLSVLYACSHAGLVREGDEIFQSM---IHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL----- 575 (784)
Q Consensus 507 -~g~-~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m----- 575 (784)
.|= -.-...|..|...|.-.|+++.|....+.- .+++|-... ...++.+...+.-.|+++.|.+.++..
T Consensus 187 ~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 187 KLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred HhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 110 001123555666666678899888776542 334443332 456778888888899999999888753
Q ss_pred CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC----C--CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 576 AV---EPGPAVWGALLGACMIHKDTNLARVASEKLFEL----D--PENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 576 ~~---~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l----~--p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
.+ ...+....+|..+|....+++.|+..+.+-+.+ + -.....+-.|+|.|...|..+.|..+.+.-.
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 11 123446778888888888899999887765542 2 2334578889999999999999988765543
No 215
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.64 E-value=0.092 Score=45.05 Aligned_cols=90 Identities=18% Similarity=0.110 Sum_probs=73.8
Q ss_pred HHHHhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCC
Q 044131 557 DILGRAGQLEKALEFIKGL-AV-EPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENV----GYHVLLSNIYSAERD 630 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m-~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~----~~~~~l~~~y~~~g~ 630 (784)
-+++..|++++|++.|.+. .+ +.++..|+.-..+++.+|+.+.|..-+++++++.-+.. ..|+.-+.+|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3577888999999988775 23 44678999999999999999999999999999753322 368899999999999
Q ss_pred hHHHHHHHHHHHhCCC
Q 044131 631 YLQAATVRQVVKKRKL 646 (784)
Q Consensus 631 ~~~a~~~~~~m~~~~~ 646 (784)
-+.|..-|+...+-|-
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 9999999988777553
No 216
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=1.7 Score=45.23 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=28.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch--------HHHHHHHHHhcCChHHHHH
Q 044131 584 WGALLGACMIHKDTNLARVASEKLFELDPENVGY--------HVLLSNIYSAERDYLQAAT 636 (784)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~--------~~~l~~~y~~~g~~~~a~~ 636 (784)
|-.+++.-+...+.+........++...|+-... +-..++.|...++.++..+
T Consensus 375 ~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r 435 (486)
T KOG0550|consen 375 WYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVR 435 (486)
T ss_pred HHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhh
Confidence 4455555555556666666666666666654322 2234445555555544443
No 217
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=95.47 E-value=0.074 Score=54.62 Aligned_cols=127 Identities=14% Similarity=0.032 Sum_probs=90.2
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHH----cCCC-CchhhHhHHHHHHHhcCCHHHHHHHHhhcC-------CCC--HH
Q 044131 414 TVSSILSACAQLGAISLGKWVHELVKS----RNFE-SNIYVSTALIDMYAKCGNIVEARELFDLMS-------HKS--EV 479 (784)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~i~~~~~~----~g~~-~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-------~~~--~~ 479 (784)
.|..+-+.|.-+|+++.+...|+.-.+ .|-. .....+..|.+.|.-.|+++.|.+.|+... .+. ..
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455555556667899999988876442 2211 134567778888999999999999887543 333 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHS-----GIRPSGVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
+.-+|...|.-...+++|+.++.+-+.- ...-....+.+|..++...|..++|+.+.+.-.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 6677888888888999999998875431 112234578899999999999999988776554
No 218
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.39 E-value=2.8 Score=40.58 Aligned_cols=193 Identities=21% Similarity=0.161 Sum_probs=127.6
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMS-----HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLY 521 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 521 (784)
..........+...+.+..+...+.... ......+..+...+...+.+.++++.+.........+. ........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHH
Confidence 4555666666777777777777666543 23445666666667777777788888877776433331 11222222
Q ss_pred -HHHccCCHHHHHHHHHHhHHhcCCCC----CcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC--HHHHHHHHHHHHh
Q 044131 522 -ACSHAGLVREGDEIFQSMIHDHGFKP----LAEHYACMVDILGRAGQLEKALEFIKGLA-VEPG--PAVWGALLGACMI 593 (784)
Q Consensus 522 -a~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~--~~~~~~ll~a~~~ 593 (784)
++...|..+++...|..... ..| ....+......+...++.++|...+.+.. ..|+ ...+..+...+..
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 138 GALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH
Confidence 67778888888888887742 233 23333334444566778888888877652 3333 5677788888888
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 594 HKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 594 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.++.+.+...+..+++..|.....+..++..+...|.++++.........
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 88888888888888888887666677777777777778888877665544
No 219
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.21 E-value=0.13 Score=45.18 Aligned_cols=50 Identities=18% Similarity=0.329 Sum_probs=31.4
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 044131 544 GFKPLAEHYACMVDILGRAGQLEKALEFIKGL----AVEPGPAVWGALLGACMI 593 (784)
Q Consensus 544 ~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m----~~~p~~~~~~~ll~a~~~ 593 (784)
.+.|+.....+++.+|+..|++..|+++++.. +++-+..+|..|+.=+..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44566666677777777777777777666543 444456677777764443
No 220
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.04 E-value=1.3 Score=42.89 Aligned_cols=144 Identities=19% Similarity=0.133 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRP--SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVD 557 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 557 (784)
.+-.....+.+.|++.+|++.|+++...-... -......+..++...|++++|...|+..++.+.-.|... +.....
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~-~A~Y~~ 85 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKAD-YALYML 85 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHH-HHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh-hHHHHH
Confidence 33444556677889999999999888752211 123455677788888999999999888887764444321 111111
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc-----------------chHHH
Q 044131 558 ILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENV-----------------GYHVL 620 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~-----------------~~~~~ 620 (784)
+++......... ...+..+....|...++.+++.-|+++ ..-..
T Consensus 86 g~~~~~~~~~~~-------------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ 146 (203)
T PF13525_consen 86 GLSYYKQIPGIL-------------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELY 146 (203)
T ss_dssp HHHHHHHHHHHH--------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCccch-------------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 111110000000 001222233445555555555555543 22345
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 044131 621 LSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 621 l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++..|.+.|+|..|..-++.+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHH
Confidence 68889999999999998888765
No 221
>PRK11906 transcriptional regulator; Provisional
Probab=94.88 E-value=0.75 Score=49.14 Aligned_cols=141 Identities=15% Similarity=0.173 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHc----------cCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHh
Q 044131 494 GLEALQLFSEML-HSGIRPSGVTFLSVLYACSH----------AGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGR 561 (784)
Q Consensus 494 ~~~A~~~~~~m~-~~g~~pd~~t~~~ll~a~~~----------~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r 561 (784)
.+.|+.+|.+.. .+.+.|+...-...+.-|.. .....+|.+.-+..+ .+.|+ ......+..+++-
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv---eld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS---DITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH---hcCCCCHHHHHHHHHHHHh
Confidence 456777888877 22356665432222222211 223455666666555 44453 5566666777777
Q ss_pred cCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHH--HHHHHHhcCChHHHHHH
Q 044131 562 AGQLEKALEFIKGL-AVEPGPA-VWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVL--LSNIYSAERDYLQAATV 637 (784)
Q Consensus 562 ~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~--l~~~y~~~g~~~~a~~~ 637 (784)
.|+++.|..+|++. .+.||.. +|......+...|+.++|.+..+++++++|.....-++ ..++|...+ .++|.++
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 88899999999887 3677644 88888888888999999999999999999976655443 344566554 5666665
Q ss_pred H
Q 044131 638 R 638 (784)
Q Consensus 638 ~ 638 (784)
+
T Consensus 430 ~ 430 (458)
T PRK11906 430 Y 430 (458)
T ss_pred H
Confidence 4
No 222
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.80 E-value=9.3 Score=43.36 Aligned_cols=49 Identities=8% Similarity=0.030 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchH
Q 044131 246 YVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTES 294 (784)
Q Consensus 246 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~ 294 (784)
.++..+|+.|.-.|++++|-...-.|...+..-|.-.+.-+...++...
T Consensus 393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~ 441 (846)
T KOG2066|consen 393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD 441 (846)
T ss_pred HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence 4556677777778888888888877777777777777777776666544
No 223
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.74 E-value=0.34 Score=42.63 Aligned_cols=52 Identities=6% Similarity=0.099 Sum_probs=45.9
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHH
Q 044131 508 GIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDIL 559 (784)
Q Consensus 508 g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l 559 (784)
...|+..+..+++.+++..|++..|.++.+...+.|+++-+...|..|+.-.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999888888888877643
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.68 E-value=0.048 Score=43.45 Aligned_cols=59 Identities=17% Similarity=0.072 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCC---CcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFEL----DPE---NVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~l----~p~---~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
+++.+...+...|++++|+..+++++++ .|+ -...+..++.+|...|++++|.+.++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5566666666777777777776666643 222 2346777888888888888888877654
No 225
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.58 E-value=0.37 Score=52.52 Aligned_cols=131 Identities=21% Similarity=0.209 Sum_probs=87.1
Q ss_pred HHcCCHHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHH
Q 044131 489 GLHGHGLEALQLFSE-MLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEK 567 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~-m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~e 567 (784)
...|+++++.++.+. -.-..++ ..-...++.-+.+.|..+.|+++-+.-..+ -++..+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCHHH
Confidence 446777776666541 1111122 333566777777888888888776543322 366778999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044131 568 ALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 568 A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 645 (784)
|.+..++.. +...|..|...+..+||++.|+.++++. ..+..|.-+|...|+-+.-.++-+....+|
T Consensus 337 A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 337 ALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999887753 7889999999999999999999999985 356778889999999888777776666544
No 226
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=94.55 E-value=9.8 Score=42.48 Aligned_cols=123 Identities=17% Similarity=0.241 Sum_probs=57.0
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCCHH---HHHHHHHHH----HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044131 454 IDMYAKCGNIVEARELFDLMSHKSEV---TWNTMISGY----GLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHA 526 (784)
Q Consensus 454 i~~y~k~g~~~~A~~~f~~~~~~~~~---~~~~li~~~----~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 526 (784)
|.++-|.|+.-+|.+++.+|.++... .+--+-..| .-..+..++++-.++....|...|... +...
T Consensus 930 Ie~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~-------lles 1002 (1189)
T KOG2041|consen 930 IEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD-------LLES 1002 (1189)
T ss_pred HHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh-------hhhh
Confidence 56777888877777777777632111 111111111 111223444444444444554333221 1223
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHH
Q 044131 527 GLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA----VEPGPAVWGAL 587 (784)
Q Consensus 527 g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~----~~p~~~~~~~l 587 (784)
|...++-.+.+..-+ -....|+-.|..--.+.|+.+.|+..--.+. +-|-..+|.-|
T Consensus 1003 ~~l~~~~ri~~n~Wr----gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySll 1063 (1189)
T KOG2041|consen 1003 GLLAEQSRILENTWR----GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLL 1063 (1189)
T ss_pred hhhhhHHHHHHhhhh----hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHH
Confidence 333333333332111 1124455556666677888888876643331 33444455444
No 227
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.55 E-value=0.25 Score=48.38 Aligned_cols=99 Identities=13% Similarity=0.148 Sum_probs=80.8
Q ss_pred HHHHHhhcC--CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----------
Q 044131 466 ARELFDLMS--HKSEVTWNTMISGYGLH-----GHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAG----------- 527 (784)
Q Consensus 466 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g----------- 527 (784)
.+..|..+. ++|-.+|-+++..|..+ +..+-....++.|.+-|+.-|..+|..||..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 456677777 78889999999988765 556666777889999999999999999999876533
Q ss_pred -----CHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCH
Q 044131 528 -----LVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQL 565 (784)
Q Consensus 528 -----~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~ 565 (784)
.-+=+..++++| +.+|+.||.++-..++.+++|.|..
T Consensus 133 ~HYP~QQ~C~I~vLeqM-E~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQM-EWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHH-HHcCCCCchHHHHHHHHHhcccccc
Confidence 223478899999 5789999999999999999999864
No 228
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=94.38 E-value=7.5 Score=40.42 Aligned_cols=220 Identities=16% Similarity=0.163 Sum_probs=136.3
Q ss_pred HhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCC-CCCCHH--HHHHHHHHHhh---hCc
Q 044131 357 SRLNEMEAARKLFDESSEK---SLASWNAMIAGYTQNGLTEEAISLFQEMQASK-VAPNPV--TVSSILSACAQ---LGA 427 (784)
Q Consensus 357 ~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~pd~~--t~~~ll~a~~~---~~~ 427 (784)
-+.|+.+.|+..-+..-.. -.-.|.+.+...++.|+++.|+++.+.-+... +.+|.. .-..+|.+-+. ..+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 4567777777776654432 22367888999999999999999998766543 445542 22333433222 124
Q ss_pred hHHHHHHHHHHHHcCCCCchhh-HhHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044131 428 ISLGKWVHELVKSRNFESNIYV-STALIDMYAKCGNIVEARELFDLMSH--KSEVTWNTMISGYGLHGHGLEALQLFSEM 504 (784)
Q Consensus 428 ~~~a~~i~~~~~~~g~~~~~~~-~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (784)
...++..-.+..+ +.||..- .-.-...|.+.|++.++-.+++.+-+ |....|.. -.+++.|+ .++.-+++.
T Consensus 245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~gd--ta~dRlkRa 318 (531)
T COG3898 245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSGD--TALDRLKRA 318 (531)
T ss_pred hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCCC--cHHHHHHHH
Confidence 5555555554444 3444322 22334678899999999999888763 44444432 22344444 444444443
Q ss_pred HH-CCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHh-cCCHHHHHHHHHhCCCCCCH
Q 044131 505 LH-SGIRPSG-VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGR-AGQLEKALEFIKGLAVEPGP 581 (784)
Q Consensus 505 ~~-~g~~pd~-~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r-~g~~~eA~~~~~~m~~~p~~ 581 (784)
.. ..++||. .+...+..+-...|++..|..--+... ...|....|..|.|.-.- .|+-.++..++-+..-.|..
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 32 2256654 566677778888899888887776664 567888888888887654 48888888888765333333
Q ss_pred HHHH
Q 044131 582 AVWG 585 (784)
Q Consensus 582 ~~~~ 585 (784)
..|.
T Consensus 396 PaW~ 399 (531)
T COG3898 396 PAWT 399 (531)
T ss_pred Cccc
Confidence 3343
No 229
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=94.27 E-value=8.8 Score=40.80 Aligned_cols=353 Identities=13% Similarity=0.054 Sum_probs=175.2
Q ss_pred hHHHHHhcccchhHHHHHHHHHHHhC----CCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCC
Q 044131 215 AVLPAVAEVQELRLGMEIQCLGLKLG----FHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNG 290 (784)
Q Consensus 215 ~ll~a~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g 290 (784)
.....+...|.+.+|+.++..++..= ...+..+||.++-++++.=-++.-. .+...=..-|--||-.|.+.=
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e----~~s~dl~pdyYemilfY~kki 208 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKE----SMSSDLYPDYYEMILFYLKKI 208 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHH----hcccccChHHHHHHHHHHHHH
Confidence 34445566666666666666665543 3478888888888877653222111 111111122445555554321
Q ss_pred CchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCC--CChhHHHHHHHHHHHhCCCcch-HHHHHHHHHHHhcCCHHHHHH
Q 044131 291 KTESSLRLFRQLLASAERVNSSTIVGLIPVFYPF--GHLHLTNCIHSFCLKSGIVSNS-SVLTALSTVYSRLNEMEAARK 367 (784)
Q Consensus 291 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~i~~~~~~~g~~~~~-~~~~~Li~~y~~~g~~~~A~~ 367 (784)
.. +++-.=..+.|...-+..++....-. ..+.--.+++..-.+.-+.|+. -+...|++-+.+ +.+++..
T Consensus 209 ~~------~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~ 280 (549)
T PF07079_consen 209 HA------FDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGH 280 (549)
T ss_pred HH------HhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHH
Confidence 11 11100011233333333333332221 1223333444444444444443 334445555544 4444444
Q ss_pred HHhhcC--------CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH----------HHHHHHH-HHhhhCch
Q 044131 368 LFDESS--------EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPV----------TVSSILS-ACAQLGAI 428 (784)
Q Consensus 368 ~f~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----------t~~~ll~-a~~~~~~~ 428 (784)
+-+.+. ++=+.++..++...++.++..+|-+.+.-+.. +.|+.. ++..++. -=....++
T Consensus 281 ~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tkl 358 (549)
T PF07079_consen 281 FCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKL 358 (549)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHH
Confidence 433322 22334778888888888998888887776654 234332 1111111 00011122
Q ss_pred HHHHHHHHHHHHcCCCCchhhH--hHHHHHHHhcCC-HHHHHHHHhhcC---CCCHHHHHHHH----HHHHHc---CCHH
Q 044131 429 SLGKWVHELVKSRNFESNIYVS--TALIDMYAKCGN-IVEARELFDLMS---HKSEVTWNTMI----SGYGLH---GHGL 495 (784)
Q Consensus 429 ~~a~~i~~~~~~~g~~~~~~~~--~~Li~~y~k~g~-~~~A~~~f~~~~---~~~~~~~~~li----~~~~~~---g~~~ 495 (784)
..-..++..+....+..-.-+. .--..-|-+.|. -+.|.++++.+. .-|..+-|... .+|.+. ....
T Consensus 359 r~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~ 438 (549)
T PF07079_consen 359 RDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIP 438 (549)
T ss_pred HHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 2223334444433322211110 011122344454 677788877665 34544444332 233332 1123
Q ss_pred HHHHHHHHHHHCCCCCCHH----HHHHHHHH--HHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 044131 496 EALQLFSEMLHSGIRPSGV----TFLSVLYA--CSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKAL 569 (784)
Q Consensus 496 ~A~~~~~~m~~~g~~pd~~----t~~~ll~a--~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~ 569 (784)
+-+.+-+-..+.|+.|-.+ .-+.|..| +...|++.++.-+-.-+. .+.|++.+|..+.-.+....+++||.
T Consensus 439 rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~ 515 (549)
T PF07079_consen 439 RLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAW 515 (549)
T ss_pred HHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHH
Confidence 3333334445677777433 23333333 455788888877666554 67888888888888888888899999
Q ss_pred HHHHhCCCCCCHHHHHH
Q 044131 570 EFIKGLAVEPGPAVWGA 586 (784)
Q Consensus 570 ~~~~~m~~~p~~~~~~~ 586 (784)
+++...| |+..+|++
T Consensus 516 ~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 516 EYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHhCC--CchhhHHH
Confidence 9998875 46666654
No 230
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.24 E-value=4.7 Score=39.66 Aligned_cols=143 Identities=17% Similarity=0.115 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHH
Q 044131 478 EVTWNTMISGYGLHGHGLEALQLFSEMLHSGI--RPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACM 555 (784)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l 555 (784)
+..|-.=+..-.+.|++++|.+.|+.+..+-. +-...+...++.|..+.++.++|....++..+.++-.|++. |...
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Y 112 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYY 112 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHH
Confidence 33444444555677899999999998886521 11345667777788888899999998888887777666643 4444
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-----------------cch
Q 044131 556 VDILGRAGQLEKALEFIKGLA-VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPEN-----------------VGY 617 (784)
Q Consensus 556 v~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~-----------------~~~ 617 (784)
+.+++. +...+ ...|.. -...|...++.++..-|++ .+.
T Consensus 113 lkgLs~----------~~~i~~~~rDq~-------------~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~ 169 (254)
T COG4105 113 LKGLSY----------FFQIDDVTRDQS-------------AARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH 169 (254)
T ss_pred HHHHHH----------hccCCccccCHH-------------HHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence 444441 11111 011111 0112222223333333322 344
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 618 HVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 618 ~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
-..+++.|.+.|.|..|..-++.|.+.
T Consensus 170 Em~IaryY~kr~~~~AA~nR~~~v~e~ 196 (254)
T COG4105 170 EMAIARYYLKRGAYVAAINRFEEVLEN 196 (254)
T ss_pred HHHHHHHHHHhcChHHHHHHHHHHHhc
Confidence 557889999999999999999888773
No 231
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.18 E-value=3.5 Score=35.89 Aligned_cols=140 Identities=13% Similarity=0.076 Sum_probs=80.0
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 044131 489 GLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKA 568 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA 568 (784)
.-.|..++..++..+...+ .+..-++.++.--..+-+-+-..+.++++-+-+.+.| +|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~--------------C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK--------------CGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG---------------S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh--------------hcchHHH
Confidence 3457777777777777653 2333344444433333444555555665544333322 3333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 044131 569 LEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 569 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 647 (784)
...+-.+. .+..-..--+.+...+|.-++-..++..+++-+..+|...+-++++|.+.|...++.++++..-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333221 122334455677788999999999999998766677889999999999999999999999999998886
No 232
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.07 E-value=1.9 Score=38.75 Aligned_cols=66 Identities=24% Similarity=0.374 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044131 514 VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRA-GQLEKALEFIKGLAVEPGPAVWGALLGACM 592 (784)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~-g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~ 592 (784)
.....++..|...+.++++..++..+. -|...++.+... ++.+.|.+++++- .++..|..++..|.
T Consensus 70 yd~~~~~~~c~~~~l~~~~~~l~~k~~----------~~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l 136 (140)
T smart00299 70 YDIEKVGKLCEKAKLYEEAVELYKKDG----------NFKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL 136 (140)
T ss_pred CCHHHHHHHHHHcCcHHHHHHHHHhhc----------CHHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 334446667777777777777766552 123334444444 6777777777762 35557777766654
No 233
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=94.06 E-value=0.44 Score=43.35 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=35.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH----HhcCCCCCcch
Q 044131 481 WNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMI----HDHGFKPLAEH 551 (784)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~----~~~~~~p~~~~ 551 (784)
...++..+...|++++|+.+.+++.... +-|...+..++.++...|+..+|.+.|+.+. ++.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555555666666666666666532 3345556666666666666666666665542 23466666443
No 234
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.99 E-value=0.084 Score=34.07 Aligned_cols=33 Identities=27% Similarity=0.256 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 582 AVWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 582 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
.+|..+..++...|++++|+..++++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 478888999999999999999999999999974
No 235
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=93.97 E-value=0.16 Score=40.43 Aligned_cols=26 Identities=15% Similarity=-0.082 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
++..+...+...|+++.|+..+++++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444555555555544444
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=93.94 E-value=1.7 Score=46.43 Aligned_cols=61 Identities=11% Similarity=0.059 Sum_probs=32.1
Q ss_pred chhhHhHHHHHHHhcCCHHHHHHHHhhcC--CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 446 NIYVSTALIDMYAKCGNIVEARELFDLMS--HKSE----VTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 446 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
+...++.+..+|.+.|++++|...|++.. .|+. .+|..+..+|+..|+.++|++.+++.++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34445555555555555555555555533 2331 2355555555555555555555555554
No 237
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.93 E-value=0.12 Score=33.30 Aligned_cols=33 Identities=33% Similarity=0.276 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 582 AVWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 582 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
..|..+...+...|+++.|+..++++++++|+|
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 467788888899999999999999999999875
No 238
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.83 E-value=0.72 Score=46.23 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=16.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 477 SEVTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
|...|-.|...|..+|+++.|..-|.+..+
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r 184 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR 184 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 444555555555555555555555555554
No 239
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.79 E-value=1.7 Score=46.56 Aligned_cols=102 Identities=15% Similarity=0.142 Sum_probs=70.7
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHH--HHHHHHHHHH
Q 044131 517 LSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPA--VWGALLGACM 592 (784)
Q Consensus 517 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~--~~~~ll~a~~ 592 (784)
..+...+-+.|..+||.+.|+.|.+++...-.......|+..|...+++.++..++.+-. .-|... .|++.|-..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 346666778899999999999998765332334466678899999999999999988864 134433 5665554444
Q ss_pred hcCCH---------------HHHHHHHHHHhcCCCCCcchH
Q 044131 593 IHKDT---------------NLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 593 ~~g~~---------------~~a~~~~~~~~~l~p~~~~~~ 618 (784)
.-++. ..|.++..++.+.+|..|.+.
T Consensus 343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 44431 235678889999999877543
No 240
>PRK11906 transcriptional regulator; Provisional
Probab=93.77 E-value=0.88 Score=48.63 Aligned_cols=114 Identities=10% Similarity=0.058 Sum_probs=87.2
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHH---------hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 044131 528 LVREGDEIFQSMIHDHGFKPL-AEHYACMVDILG---------RAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHK 595 (784)
Q Consensus 528 ~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~---------r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g 595 (784)
..+.|..+|.+......+.|+ ...|..+...+. ......+|.++.++. .+.| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 356788889888755577887 455555444332 123445667776665 3455 6677777777778888
Q ss_pred CHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 596 DTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 596 ~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
+.+.|...++++..++|+.+..+...+.+..-+|+.++|.+..+.-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999988773
No 241
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=93.65 E-value=7.1 Score=37.63 Aligned_cols=196 Identities=20% Similarity=0.143 Sum_probs=123.0
Q ss_pred HHHHHHHHHHhhhCchHHHHHHHHHHHHc-CCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CC-HHHHHHHHH-H
Q 044131 413 VTVSSILSACAQLGAISLGKWVHELVKSR-NFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--KS-EVTWNTMIS-G 487 (784)
Q Consensus 413 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~-~~~~~~li~-~ 487 (784)
..+......+...+.+..+...+...... ........+..+...+...+....+...+..... ++ ...+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444444555555555544444432 2233344455555556666666666666665553 21 122333333 6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--cchHHHHHHHHHh
Q 044131 488 YGLHGHGLEALQLFSEMLHSGIRP----SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL--AEHYACMVDILGR 561 (784)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~p----d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~r 561 (784)
+...|+.++|...|++... ..| ....+......+...+..+++...+....+. .|+ ...+..+...+..
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 214 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL---NPDDDAEALLNLGLLYLK 214 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh---CcccchHHHHHhhHHHHH
Confidence 7788888888888888855 333 2334444444467788888888888887642 333 5667777888888
Q ss_pred cCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 562 AGQLEKALEFIKGLA-VEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 562 ~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
.|.+++|...+.... ..|+ ...+..+...+...++.+.+...+++.++..|.
T Consensus 215 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 215 LGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred cccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 888888888887763 4454 455666666666677899999999999998887
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.64 E-value=2 Score=46.05 Aligned_cols=218 Identities=16% Similarity=0.108 Sum_probs=113.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHH---HH
Q 044131 492 GHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLE---KA 568 (784)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~---eA 568 (784)
.+.+.-+++-++.++ +.||-.+-..+| |-..+..+.++.++|++..+.-. . .|++....+ ..
T Consensus 182 Rnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE-----~-------~lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 182 RNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE-----A-------SLGKSQFLQHHGHF 246 (539)
T ss_pred CCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH-----H-------hhchhhhhhcccch
Confidence 445555555555555 566665443333 33345567788888877654210 0 011111000 01
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044131 569 LEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPE--NVGYHVLLSNIYSAERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 569 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 646 (784)
.+.+.+-...|-..+-..|...+++.|+.++|.+.++.+++..|. +-..+..|.+.|...+++.|+..+..+-.+...
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 111111112333444456777778888888888888888876664 445777888888888888888888777655444
Q ss_pred ccCCcccEEEECCEEEEEEeCCCCCcc-------hHHHHHHHHHHHHHHHHcCcccCCCccccccchHHHHhhh-hhHHH
Q 044131 647 AKAPGCTLIEVGGTPHVFTSGDQLHPQ-------STAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMM-KVHSE 718 (784)
Q Consensus 647 ~k~~g~s~i~~~~~~~~f~~~d~~h~~-------~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~k~~~~-~~hse 718 (784)
.|...++|...--+ .=.++|+..|. +......++.+.+.++...++|+--.-.-.+.-. -|.++ ..-||
T Consensus 327 pkSAti~YTaALLk--aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilP-PehilkrGDSE 403 (539)
T PF04184_consen 327 PKSATICYTAALLK--ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILP-PEHILKRGDSE 403 (539)
T ss_pred CchHHHHHHHHHHH--HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCC-hHHhcCCCcHH
Confidence 44433333110000 00112222221 2223446677888888888888632222221111 12233 34578
Q ss_pred HHHHHHhhc
Q 044131 719 KLAIAFGLI 727 (784)
Q Consensus 719 ~la~~~~l~ 727 (784)
-+|-||--+
T Consensus 404 AiaYAf~hL 412 (539)
T PF04184_consen 404 AIAYAFFHL 412 (539)
T ss_pred HHHHHHHHH
Confidence 777776533
No 243
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.59 E-value=12 Score=39.90 Aligned_cols=75 Identities=19% Similarity=0.160 Sum_probs=59.1
Q ss_pred HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 044131 567 KALEFIKGLAVEP----GPAVWGALLGA--CMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 567 eA~~~~~~m~~~p----~~~~~~~ll~a--~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 640 (784)
.-+.++++.++.| +...-+.|..| ...+|++.++.....=+.+..| ++.+|-+++-......+++||...+..
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3455666666555 33355666654 4679999999999988999999 799999999999999999999999876
Q ss_pred HH
Q 044131 641 VK 642 (784)
Q Consensus 641 m~ 642 (784)
+.
T Consensus 521 LP 522 (549)
T PF07079_consen 521 LP 522 (549)
T ss_pred CC
Confidence 53
No 244
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.36 E-value=4.2 Score=45.03 Aligned_cols=115 Identities=16% Similarity=0.100 Sum_probs=78.2
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCcchHHHH-HHHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHHhcCCHH
Q 044131 526 AGLVREGDEIFQSMIHDHGFKPLAEHYACM-VDILGRAGQLEKALEFIKGLAV------EPGPAVWGALLGACMIHKDTN 598 (784)
Q Consensus 526 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-v~~l~r~g~~~eA~~~~~~m~~------~p~~~~~~~ll~a~~~~g~~~ 598 (784)
....+.+.++++.+.+.| |+...|... ...+...|++++|.+.+++.-. +-....+--+...+....+++
T Consensus 246 ~~~~~~a~~lL~~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~ 322 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWE 322 (468)
T ss_pred CCCHHHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHH
Confidence 445677777777777553 665444333 3455667788888888875420 112335556667788889999
Q ss_pred HHHHHHHHHhcCCCCCcchH-HHHHHHHHhcCCh-------HHHHHHHHHHHh
Q 044131 599 LARVASEKLFELDPENVGYH-VLLSNIYSAERDY-------LQAATVRQVVKK 643 (784)
Q Consensus 599 ~a~~~~~~~~~l~p~~~~~~-~~l~~~y~~~g~~-------~~a~~~~~~m~~ 643 (784)
+|...+.++.+.+.-....| ...+-+|...|+- ++|.+.++....
T Consensus 323 ~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 323 EAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 99999999998776655544 4566678888888 777777776654
No 245
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.20 E-value=1 Score=45.84 Aligned_cols=120 Identities=13% Similarity=0.052 Sum_probs=64.6
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCC--CC--CcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-----HH
Q 044131 519 VLYACSHAGLVREGDEIFQSMIHDHGF--KP--LAEHYACMVDILGRAGQLEKALEFIKGL-------AVEPG-----PA 582 (784)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~~~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-----~~ 582 (784)
+..|....+.++++++.|+...+-..- .| ....|..+..+|++..++++|.-+..+. .++.= ..
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 334444445577777777766432111 11 1456667777777777777665544332 22111 11
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcC--CCCCcch----HHHHHHHHHhcCChHHHHHHH
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFEL--DPENVGY----HVLLSNIYSAERDYLQAATVR 638 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~l--~p~~~~~----~~~l~~~y~~~g~~~~a~~~~ 638 (784)
+..-+.-+++..|.+-.|.+..+++.++ ...|-.. ...+++||...|+.|.|..-+
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRY 269 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHH
Confidence 2233445677777777777776666553 2233222 345677777777766655443
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.16 E-value=5.8 Score=35.59 Aligned_cols=125 Identities=10% Similarity=-0.000 Sum_probs=75.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHH
Q 044131 481 WNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILG 560 (784)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~ 560 (784)
-..+|..+.+.+.......+++.+...+ ..+...++.++..++... .++..++++. .++......++..+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~ 80 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE 80 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence 3456667777777888888888887765 355566777777776543 3444455542 122333444667777
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 044131 561 RAGQLEKALEFIKGLAVEPGPAVWGALLGACMIH-KDTNLARVASEKLFELDPENVGYHVLLSNIY 625 (784)
Q Consensus 561 r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~-g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 625 (784)
+.+.++++.-++.+++. |...+.....+ ++++.|.+.+++ +.++..|..++..+
T Consensus 81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~ 135 (140)
T smart00299 81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKAL 135 (140)
T ss_pred HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHH
Confidence 77777777777777652 22222223334 788888888776 23445565555444
No 247
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.01 E-value=12 Score=44.59 Aligned_cols=47 Identities=15% Similarity=0.126 Sum_probs=20.9
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHH
Q 044131 557 DILGRAGQLEKALEFIKGLAVEPGPAVW--GALLGACMIHKDTNLARVA 603 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m~~~p~~~~~--~~ll~a~~~~g~~~~a~~~ 603 (784)
.+|-.+|++.+|+.+-.++....|...- ..|.+-+...++.-+|-.+
T Consensus 973 ~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~i 1021 (1265)
T KOG1920|consen 973 KAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKI 1021 (1265)
T ss_pred HHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHH
Confidence 3444455555555555555433333221 3444445444444443333
No 248
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=92.81 E-value=1.2 Score=39.77 Aligned_cols=59 Identities=19% Similarity=0.168 Sum_probs=44.9
Q ss_pred HHHhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc
Q 044131 558 ILGRAGQLEKALEFIKGL----AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVG 616 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m----~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 616 (784)
...+.|++++|.+.|+.+ |..| ...+--.|+.++...++++.|...+++.++++|.++.
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 344677888888777765 4333 2335666888999999999999999999999998765
No 249
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.78 E-value=0.85 Score=47.52 Aligned_cols=138 Identities=13% Similarity=0.029 Sum_probs=96.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 485 ISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQ 564 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~ 564 (784)
.+.|.+.|++..|...|++.... |. +...-..++...... .-...+..+.-.+.+.++
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~------------l~-~~~~~~~ee~~~~~~---------~k~~~~lNlA~c~lKl~~ 272 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF------------LE-YRRSFDEEEQKKAEA---------LKLACHLNLAACYLKLKE 272 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH------------hh-ccccCCHHHHHHHHH---------HHHHHhhHHHHHHHhhhh
Confidence 45677888888888888886652 00 011111122222111 112355667778888899
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH-HHHHHHH
Q 044131 565 LEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQA-ATVRQVV 641 (784)
Q Consensus 565 ~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a-~~~~~~m 641 (784)
+.+|++..++. ...| |.-..--=..||...|+++.|+..++++++++|+|-.+...|+.+-.+..+..+. .+++..|
T Consensus 273 ~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 273 YKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888775 3444 5556666778999999999999999999999999999999898887777766655 6777877
Q ss_pred HhC
Q 044131 642 KKR 644 (784)
Q Consensus 642 ~~~ 644 (784)
-.+
T Consensus 353 F~k 355 (397)
T KOG0543|consen 353 FAK 355 (397)
T ss_pred hhc
Confidence 543
No 250
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=92.45 E-value=11 Score=36.47 Aligned_cols=56 Identities=21% Similarity=0.113 Sum_probs=24.5
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 044131 385 AGYTQNGLTEEAISLFQEMQASKVAP--NPVTVSSILSACAQLGAISLGKWVHELVKS 440 (784)
Q Consensus 385 ~~~~~~g~~~~A~~l~~~m~~~g~~p--d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 440 (784)
..+.+.|++.+|.+.|+++...-... -......+..++-..++.+.|...++..++
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~ 70 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK 70 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566666666666665431110 112223334444455555555555554443
No 251
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=92.41 E-value=14 Score=42.53 Aligned_cols=162 Identities=14% Similarity=0.106 Sum_probs=68.9
Q ss_pred HHHHHhhcCCChHHHHHHhccCC---CCCcccHHHHHHHHHcCCCc-------hHHHHHHHHHHHcCCCCCChh--hHHh
Q 044131 148 ALVDLYFKFSWVKSARKVFDKMP---EKDTVLWNSMISGLMKNCCF-------QDSIWVFGDMVRNGGTWLDST--SVAA 215 (784)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~-------~~A~~l~~~m~~~~g~~pd~~--t~~~ 215 (784)
++|--+.|||++++|.++..+.. .+....+-..+..|..+.+. ++...-|++..+. ....|++ ..-.
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~-~~~~DpyK~AvY~ 194 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN-STDGDPYKRAVYK 194 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT--TTS-HHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC-CCCCChHHHHHHH
Confidence 46666779999999999883332 23345566677777665322 3445556665543 3322554 3333
Q ss_pred HHHHHhccc-c-------hhHHHHHHHHHHHhCCC-----CchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHH
Q 044131 216 VLPAVAEVQ-E-------LRLGMEIQCLGLKLGFH-----DHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAM 282 (784)
Q Consensus 216 ll~a~~~~~-~-------~~~a~~~~~~~~~~g~~-----~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~l 282 (784)
+|..|--.. . ++.-.-++-.+++..-. .+..++..|-+...+-|. +.|.. ..+...|
T Consensus 195 ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge-----~~F~~--~~~p~~Y--- 264 (613)
T PF04097_consen 195 ILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGE-----SHFNA--GSNPLLY--- 264 (613)
T ss_dssp HHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-G-----GGCTT--------H---
T ss_pred HHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhch-----hhccc--chhHHHH---
Confidence 444442211 1 12222222222222211 112233322222221111 22222 1222222
Q ss_pred HHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhc
Q 044131 283 ISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFY 322 (784)
Q Consensus 283 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 322 (784)
...+.-.|+++.|++.+-+ ..+...|.+.+...+..+.
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~g 302 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYG 302 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcC
Confidence 3455678899999988876 3344556666666655443
No 252
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.26 E-value=3.3 Score=37.71 Aligned_cols=92 Identities=18% Similarity=0.222 Sum_probs=66.0
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCC
Q 044131 519 VLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEPGPAVWGALLGACMIHKD 596 (784)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~a~~~~g~ 596 (784)
+++.-...++.+++..+++.+. -+.|. .++-..-+..+.+.|++.+|..+++++. -.|....-.+|+..|.....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 3344456678888888888875 56676 3444445566788999999999999884 34556667788888887766
Q ss_pred HHHHHHHHHHHhcCCCC
Q 044131 597 TNLARVASEKLFELDPE 613 (784)
Q Consensus 597 ~~~a~~~~~~~~~l~p~ 613 (784)
-..=...++.+++..|+
T Consensus 93 D~~Wr~~A~evle~~~d 109 (160)
T PF09613_consen 93 DPSWRRYADEVLESGAD 109 (160)
T ss_pred ChHHHHHHHHHHhcCCC
Confidence 66667777888887764
No 253
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.13 E-value=3.6 Score=41.21 Aligned_cols=117 Identities=14% Similarity=0.113 Sum_probs=70.3
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH---HHHHHHhcCCHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGA---LLGACMIHKDTN 598 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~---ll~a~~~~g~~~ 598 (784)
....|+..++...|...... .|+ .+.-..|...|...|+.++|..++..+|.+-...-|.. -+.......+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34455666666666655432 222 44555667777777777777777777764443333333 111222222222
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 599 LARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 599 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
... .+++-+..+|+|...-..|+..|...|+.++|.+..-.+..
T Consensus 221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 211 23444567899999999999999999999999887655543
No 254
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.12 E-value=0.95 Score=44.78 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC----C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---cchHHHH
Q 044131 552 YACMVDILGRAGQLEKALEFIKGL----A---VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPEN---VGYHVLL 621 (784)
Q Consensus 552 ~~~lv~~l~r~g~~~eA~~~~~~m----~---~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l 621 (784)
|+.-+++| ..|++.+|..-|... | ..||..-| |..++...|+++.|...|..+.+-.|++ |..+.-|
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 44433332 344455555544432 2 34444444 6666666677776666666666644433 3456666
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 044131 622 SNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 622 ~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+.+..+.|+-++|..+++...+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 6677777777777776666544
No 255
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=91.90 E-value=0.95 Score=42.26 Aligned_cols=88 Identities=15% Similarity=0.086 Sum_probs=66.6
Q ss_pred HHHhcCCHHHHHHHHHhC-C-CCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 558 ILGRAGQLEKALEFIKGL-A-VEP-----GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERD 630 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m-~-~~p-----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 630 (784)
-+...|++++|..-+... . .+| ..+.|..-..+..+.+..+.|+....++++++|....+...-+.+|.+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 344566677666665443 1 112 233455555677788999999999999999999988888888999999999
Q ss_pred hHHHHHHHHHHHhCC
Q 044131 631 YLQAATVRQVVKKRK 645 (784)
Q Consensus 631 ~~~a~~~~~~m~~~~ 645 (784)
+++|..-++.+.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999987743
No 256
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.80 E-value=29 Score=39.97 Aligned_cols=114 Identities=14% Similarity=-0.066 Sum_probs=56.0
Q ss_pred HHHhhCCCChhHHHHHhccCCCCCcchHHHHHHH----HhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCC
Q 044131 48 AHRLSDFKATCYARALFFSIPKPDLFLFNVIIRG----FSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCD 123 (784)
Q Consensus 48 ~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 123 (784)
+++..+-.-.+.|..+-..-..+. ..-..+.+. +.+.|++++|.. .+-+-.. -+.| +.+++-+.....
T Consensus 341 L~iL~kK~ly~~Ai~LAk~~~~d~-d~~~~i~~kYgd~Ly~Kgdf~~A~~-qYI~tI~-~le~-----s~Vi~kfLdaq~ 412 (933)
T KOG2114|consen 341 LDILFKKNLYKVAINLAKSQHLDE-DTLAEIHRKYGDYLYGKGDFDEATD-QYIETIG-FLEP-----SEVIKKFLDAQR 412 (933)
T ss_pred HHHHHHhhhHHHHHHHHHhcCCCH-HHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHcc-cCCh-----HHHHHHhcCHHH
Confidence 444444445555555544322221 122223332 245677777776 4433321 1222 234444444444
Q ss_pred chHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCC
Q 044131 124 RSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMP 170 (784)
Q Consensus 124 ~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~ 170 (784)
+..-...++.+.+.|+... .--+.|++.|.|.++.+.-.+..+..+
T Consensus 413 IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~ 458 (933)
T KOG2114|consen 413 IKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCD 458 (933)
T ss_pred HHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCC
Confidence 4444455666666665332 233567777777777766666655544
No 257
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=91.78 E-value=3.1 Score=45.42 Aligned_cols=102 Identities=15% Similarity=0.176 Sum_probs=64.7
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHH
Q 044131 354 TVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKW 433 (784)
Q Consensus 354 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 433 (784)
+...++|+++.|.++-++.. +...|..|.....+.|+.+-|.+.|.+... +..++-.+...|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 34467888888888876655 556888888888888888888888876542 4445555666677766666
Q ss_pred HHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhh
Q 044131 434 VHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDL 472 (784)
Q Consensus 434 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 472 (784)
+-......| . +|.....+.-.|++++..+++.+
T Consensus 395 l~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 395 LAKIAEERG-D-----INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666555 1 33334444455666666655544
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.77 E-value=1.3 Score=43.82 Aligned_cols=93 Identities=18% Similarity=0.204 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG----VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYAC 554 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 554 (784)
.|+.-+.. .+.|++.+|...|...++.. |+. ..+-.|..++...|++++|..+|..+.++++-.|. ++.+--
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 45555443 45677888888888888753 221 23556778888888888888888888887766666 467777
Q ss_pred HHHHHHhcCCHHHHHHHHHhC
Q 044131 555 MVDILGRAGQLEKALEFIKGL 575 (784)
Q Consensus 555 lv~~l~r~g~~~eA~~~~~~m 575 (784)
+...+.+.|+.++|...+++.
T Consensus 221 lg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHH
Confidence 777777777777777666654
No 259
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.09 E-value=34 Score=39.44 Aligned_cols=142 Identities=13% Similarity=0.047 Sum_probs=80.4
Q ss_pred HHHHHhhcCCChHHHHHHhccCCCCCcccHHHHH----HHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcc
Q 044131 148 ALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMI----SGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEV 223 (784)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li----~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~ 223 (784)
.-+++..+...++-|..+-..-..+ ...-..+. +-+.+.|++++|..-|-+-.. -+.|. .+++-+...
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~--~le~s-----~Vi~kfLda 410 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG--FLEPS-----EVIKKFLDA 410 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc--cCChH-----HHHHHhcCH
Confidence 3455556666666666665443322 11222222 234568889999888877653 23332 344455555
Q ss_pred cchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCee-eHHHHHHHHHhCCCchHHHHH
Q 044131 224 QELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLI-SCNAMISGYTCNGKTESSLRL 298 (784)
Q Consensus 224 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~-~~~~li~~~~~~g~~~~A~~l 298 (784)
..+..-..+++.+.+.|+... .--+.|++.|.|.++.+.-.+..+....-..+ -....+..+.+.+..++|..+
T Consensus 411 q~IknLt~YLe~L~~~gla~~-dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLANS-DHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHcccccc-hhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence 556666667777777787543 33467889999999988877776665521111 133344444444444444433
No 260
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.00 E-value=4.3 Score=36.25 Aligned_cols=114 Identities=18% Similarity=0.077 Sum_probs=65.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHh
Q 044131 485 ISGYGLHGHGLEALQLFSEMLHSGIRP---SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGR 561 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r 561 (784)
.....+.|++++|.+.|+.+... .+. ....-..++.++...|++++|...+++.++-+.-.|+ ..|.....+|+.
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHH
Confidence 34445668888888888877764 222 2344666777788888888888888877755433333 345444444443
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 562 AGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 562 ~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
-...+ ..+..+. +.=+-.+....|...++.+++.-|++.
T Consensus 95 ~~~~~---~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 95 YEQDE---GSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHhh---hHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 32222 1111111 111122335677788888888888754
No 261
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=90.85 E-value=20 Score=37.95 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC---Chh----HHHHHHHHHHh---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044131 351 ALSTVYSRLNEMEAARKLFDESSEK---SLA----SWNAMIAGYTQ---NGLTEEAISLFQEMQASKVAPNPVTVSSILS 420 (784)
Q Consensus 351 ~Li~~y~~~g~~~~A~~~f~~~~~~---~~~----~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 420 (784)
.|+-.|....+++...++.+.++.. ++. .--...-++.+ .|+.++|++++..+....-.+++.||..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4455688888888888888887654 221 11123344556 7899999999999776667788888877766
Q ss_pred HHh
Q 044131 421 ACA 423 (784)
Q Consensus 421 a~~ 423 (784)
.|-
T Consensus 226 IyK 228 (374)
T PF13281_consen 226 IYK 228 (374)
T ss_pred HHH
Confidence 553
No 262
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=90.65 E-value=2 Score=42.32 Aligned_cols=99 Identities=12% Similarity=0.131 Sum_probs=75.0
Q ss_pred HHHHHhhcC--CCChhHHHHHHHHHHhC-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhC-----------
Q 044131 365 ARKLFDESS--EKSLASWNAMIAGYTQN-----GLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLG----------- 426 (784)
Q Consensus 365 A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~----------- 426 (784)
.++.|...+ ++|-.+|-+++..|... +..+=....++.|.+-|+.-|..+|..||+.+-+-.
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 456677666 67888888888888754 556666677888999999999999999998875432
Q ss_pred -----chHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCH
Q 044131 427 -----AISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNI 463 (784)
Q Consensus 427 -----~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~ 463 (784)
+-+-+..++++|...|+-||-.+-..|++.+++.|-.
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2344677888888888888888888888888777653
No 263
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.21 E-value=4.9 Score=44.58 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=36.8
Q ss_pred CCHHHHHHHHhhcCC--CCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHccCCHHHHHH
Q 044131 461 GNIVEARELFDLMSH--KSEVTWNTMIS-GYGLHGHGLEALQLFSEMLHSGI---RPSGVTFLSVLYACSHAGLVREGDE 534 (784)
Q Consensus 461 g~~~~A~~~f~~~~~--~~~~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~---~pd~~t~~~ll~a~~~~g~~~~a~~ 534 (784)
...+.|.++++.+.+ |+...|.-.-. .+...|+.++|++.|++...... +.....+--+.-.+...+++++|.+
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~ 326 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE 326 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence 445555566555553 55555544332 23345666666666665442110 0111222233333444555555555
Q ss_pred HHHHhHH
Q 044131 535 IFQSMIH 541 (784)
Q Consensus 535 ~~~~m~~ 541 (784)
+|..+.+
T Consensus 327 ~f~~L~~ 333 (468)
T PF10300_consen 327 YFLRLLK 333 (468)
T ss_pred HHHHHHh
Confidence 5555543
No 264
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.20 E-value=19 Score=35.10 Aligned_cols=199 Identities=14% Similarity=0.041 Sum_probs=104.0
Q ss_pred HHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCC--HHHHHHHHHHHHHcC
Q 044131 415 VSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKS--EVTWNTMISGYGLHG 492 (784)
Q Consensus 415 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~--~~~~~~li~~~~~~g 492 (784)
|...-.++....++++++.-+..+.+. .+.+...|. ....++.|.-+.+++.+-+ +..++--...|.++|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G 105 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG 105 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC
Confidence 333344566666777777655555432 122221111 1223445555555555322 235666677788888
Q ss_pred CHHHHHHHHHHHHH--CCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 044131 493 HGLEALQLFSEMLH--SGIRPSGVT--FLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKA 568 (784)
Q Consensus 493 ~~~~A~~~~~~m~~--~g~~pd~~t--~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA 568 (784)
..+-|-..+++.-+ +++.||... |..-+......++...| .+.|......|.|..+++||
T Consensus 106 spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma----------------~el~gk~sr~lVrl~kf~Ea 169 (308)
T KOG1585|consen 106 SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMA----------------FELYGKCSRVLVRLEKFTEA 169 (308)
T ss_pred CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHH----------------HHHHHHhhhHhhhhHHhhHH
Confidence 77766666655432 234554321 22222222222222222 33455556677788888887
Q ss_pred HHHHHhCC-------CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc----CCCCCcchHHHHHHHHHhcCChHHHHH
Q 044131 569 LEFIKGLA-------VEPGPA-VWGALLGACMIHKDTNLARVASEKLFE----LDPENVGYHVLLSNIYSAERDYLQAAT 636 (784)
Q Consensus 569 ~~~~~~m~-------~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~----l~p~~~~~~~~l~~~y~~~g~~~~a~~ 636 (784)
-..+.+-. --|+.. .+-+++-.+....|+..|++.++.-.+ ..|++......|...| ..|+.+++.+
T Consensus 170 a~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~k 248 (308)
T KOG1585|consen 170 ATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKK 248 (308)
T ss_pred HHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHH
Confidence 76665432 122221 344444455556688888888887555 3466666666665554 4577777776
Q ss_pred HH
Q 044131 637 VR 638 (784)
Q Consensus 637 ~~ 638 (784)
|.
T Consensus 249 vl 250 (308)
T KOG1585|consen 249 VL 250 (308)
T ss_pred HH
Confidence 64
No 265
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.13 E-value=39 Score=38.97 Aligned_cols=210 Identities=12% Similarity=0.105 Sum_probs=90.1
Q ss_pred HHHHHHHhcCChHHHHHHHhcC---CCCCeeeHHHHHHHHHhCCC-------chHHHHHHHHHHHcCCCCChh--hHHhH
Q 044131 250 GLVSFYSKCGEVERAELLFRDI---VRPDLISCNAMISGYTCNGK-------TESSLRLFRQLLASAERVNSS--TIVGL 317 (784)
Q Consensus 250 ~li~~y~~~g~~~~A~~~f~~~---~~~d~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~--t~~~l 317 (784)
++|-.+.+||++++|.++..+. .++....+-..+..|+.+.+ -++...-|++........|++ ..-.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~i 195 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKI 195 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Confidence 5667788999999999888333 22344556667777766532 235555666665544433443 22233
Q ss_pred HHhhcCCC-C-------hhHHHHHHHHHHHhCCCc-----chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHH
Q 044131 318 IPVFYPFG-H-------LHLTNCIHSFCLKSGIVS-----NSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMI 384 (784)
Q Consensus 318 l~~~~~~~-~-------~~~a~~i~~~~~~~g~~~-----~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li 384 (784)
|..|--.. + .+.-..++-.+++..-.. +..++..|-+...+-| .+.|.. ..+...| .
T Consensus 196 lg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~G-----e~~F~~--~~~p~~Y---f 265 (613)
T PF04097_consen 196 LGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYG-----ESHFNA--GSNPLLY---F 265 (613)
T ss_dssp HHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT--------H---H
T ss_pred HhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhc-----hhhccc--chhHHHH---H
Confidence 44443211 1 222233333333332211 1222222222211111 122222 1122222 2
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcC-CCCchhhHhHHHHHHHh---c
Q 044131 385 AGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRN-FESNIYVSTALIDMYAK---C 460 (784)
Q Consensus 385 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g-~~~~~~~~~~Li~~y~k---~ 460 (784)
..+.-.|+++.|++.+.+ ..+...|.+.+...+..+.-+.-.+... ..+.... -.+...-+..||..|.+ .
T Consensus 266 ~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 344568999999998876 3345667777777776655443332222 2222111 01112446678888876 4
Q ss_pred CCHHHHHHHHhhcC
Q 044131 461 GNIVEARELFDLMS 474 (784)
Q Consensus 461 g~~~~A~~~f~~~~ 474 (784)
.+..+|.+.|--+.
T Consensus 341 td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 341 TDPREALQYLYLIC 354 (613)
T ss_dssp T-HHHHHHHHHGGG
T ss_pred cCHHHHHHHHHHHH
Confidence 67888888877665
No 266
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.56 E-value=25 Score=35.47 Aligned_cols=155 Identities=15% Similarity=0.069 Sum_probs=98.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 485 ISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQ 564 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~ 564 (784)
.......|++.+|..+|....+.. +-+...-..+..++...|+++.|..++..+-.+.. .........-+..+.++..
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~-~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ-DKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch-hhHHHHHHHHHHHHHHHhc
Confidence 345567788888999888888753 22344556677888889999999998887643210 0011112334667777777
Q ss_pred HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChHH-HHHHHHH
Q 044131 565 LEKALEFIKGLAVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELD--PENVGYHVLLSNIYSAERDYLQ-AATVRQV 640 (784)
Q Consensus 565 ~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~--p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~ 640 (784)
..+..++..+..-.| |...--.|...+...|+.+.|...+-.+++.+ -+|...--.|..++...|.-+. +.+.|++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 777777766665566 45566667777788888888877666666543 4555666667777766664433 3333444
Q ss_pred H
Q 044131 641 V 641 (784)
Q Consensus 641 m 641 (784)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 3
No 267
>PRK09687 putative lyase; Provisional
Probab=89.51 E-value=27 Score=35.73 Aligned_cols=76 Identities=7% Similarity=0.046 Sum_probs=40.8
Q ss_pred CcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044131 343 VSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSAC 422 (784)
Q Consensus 343 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 422 (784)
.++..+...-+.+..+.|+.+....+.+.+..+++ .-..+.++.+.|.. +|+..+.++... .||...-...+.+|
T Consensus 203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~ 277 (280)
T PRK09687 203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL 277 (280)
T ss_pred CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence 34555555555666666664433333344433332 23456666777764 577777777653 34655555555554
Q ss_pred h
Q 044131 423 A 423 (784)
Q Consensus 423 ~ 423 (784)
.
T Consensus 278 ~ 278 (280)
T PRK09687 278 K 278 (280)
T ss_pred h
Confidence 3
No 268
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=89.40 E-value=33 Score=36.60 Aligned_cols=140 Identities=13% Similarity=0.123 Sum_probs=83.5
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCc---ccHHHHHHHHHcCCCchHHHHHHHHHHHcCC
Q 044131 129 LLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDT---VLWNSMISGLMKNCCFQDSIWVFGDMVRNGG 205 (784)
Q Consensus 129 ~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g 205 (784)
++-+.+... +.|...|-+||.-|...|..++-++++++|..|-+ ..|..-|++=....++.....+|.+.... .
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k-~ 106 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK-S 106 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-h
Confidence 444444332 56778888999999999999999999999987743 46888888877788888888888888765 4
Q ss_pred CCCChhhHHhHHHHHhcccchh------HHHHHHHHHHH-hCCCC-chhHHHHHHHHHH---------hcCChHHHHHHH
Q 044131 206 TWLDSTSVAAVLPAVAEVQELR------LGMEIQCLGLK-LGFHD-HVYVLTGLVSFYS---------KCGEVERAELLF 268 (784)
Q Consensus 206 ~~pd~~t~~~ll~a~~~~~~~~------~a~~~~~~~~~-~g~~~-~~~~~~~li~~y~---------~~g~~~~A~~~f 268 (784)
+..| .|..-|.-..+.+.+- ...+.++.++. .+++| ....|+..++..- ...++|..++.+
T Consensus 107 l~ld--LW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 107 LNLD--LWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred ccHh--HHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 4433 3333333332222211 12234444443 34544 3334555544332 223455566666
Q ss_pred hcCCC
Q 044131 269 RDIVR 273 (784)
Q Consensus 269 ~~~~~ 273 (784)
.++..
T Consensus 185 ~ral~ 189 (660)
T COG5107 185 MRALQ 189 (660)
T ss_pred HHHHc
Confidence 66643
No 269
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=89.23 E-value=1.9 Score=37.27 Aligned_cols=87 Identities=18% Similarity=0.150 Sum_probs=45.1
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CC-CHH---HHHHHHHHHHhcC
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-V-EP-GPA---VWGALLGACMIHK 595 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p-~~~---~~~~ll~a~~~~g 595 (784)
.+..|+++.|++.|.+.+ .+-|. ...||.-..++--.|+.++|++=+++.. + .| ... .|..-...|+..|
T Consensus 53 laE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 445555555555555544 23332 4555555555555566655555554431 0 11 111 2222334566777
Q ss_pred CHHHHHHHHHHHhcCCC
Q 044131 596 DTNLARVASEKLFELDP 612 (784)
Q Consensus 596 ~~~~a~~~~~~~~~l~p 612 (784)
+.+.|..-|+.+-++..
T Consensus 130 ~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGS 146 (175)
T ss_pred chHHHHHhHHHHHHhCC
Confidence 77777777766665544
No 270
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.97 E-value=3.8 Score=41.51 Aligned_cols=159 Identities=11% Similarity=-0.043 Sum_probs=112.1
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHH----HHHHHHhcCCH
Q 044131 490 LHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYAC----MVDILGRAGQL 565 (784)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----lv~~l~r~g~~ 565 (784)
-+|...+|-..++++++. .+.|...+.-.=.+|...|+.+.-...++++... -.|+...|.. +.-.+..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 478888888899998875 6778888888889999999999999999888742 3556544443 34455688999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC----cchHHHHHHHHHhcCChHHHHHHHH
Q 044131 566 EKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPEN----VGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 566 ~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~----~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
++|++.-++. .+.| |.-.-.++.......|+..+|.+..++--..-.+. +-.|-..+-.|...+.++.|.++++
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999998876 4555 44466677777888899999988876643321111 1234445556777789999999987
Q ss_pred HHHhCCCccCCc
Q 044131 640 VVKKRKLAKAPG 651 (784)
Q Consensus 640 ~m~~~~~~k~~g 651 (784)
.=.-+.+.|..+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 654444545444
No 271
>PRK15331 chaperone protein SicA; Provisional
Probab=88.71 E-value=13 Score=34.01 Aligned_cols=81 Identities=10% Similarity=0.005 Sum_probs=36.2
Q ss_pred hcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 044131 459 KCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEI 535 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 535 (784)
..|++++|..+|.-+. .-|..-|..|..++-..+++++|+..|......+ .-|+..+-.....+...|+.+.|+..
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 3455555555555433 1233344455555555555555555554444322 12222233333444444444444444
Q ss_pred HHHhH
Q 044131 536 FQSMI 540 (784)
Q Consensus 536 ~~~m~ 540 (784)
|+...
T Consensus 128 f~~a~ 132 (165)
T PRK15331 128 FELVN 132 (165)
T ss_pred HHHHH
Confidence 44443
No 272
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=88.48 E-value=27 Score=34.50 Aligned_cols=179 Identities=16% Similarity=0.067 Sum_probs=107.4
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCH--HHHH
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSHK------SEVTWNTMISGYGLHGHGLEALQLFSEMLHSG-IRPSG--VTFL 517 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~--~t~~ 517 (784)
...|+--+ .-.+.|++++|.+.|+.+... ...+--.++-++-+.+++++|+..+++....- -.||. +.|.
T Consensus 35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 34444433 345679999999999999742 23344556677888999999999999988743 23332 3444
Q ss_pred HHHHHHHccCC----HH---HHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHH--HHHHH
Q 044131 518 SVLYACSHAGL----VR---EGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAV--WGALL 588 (784)
Q Consensus 518 ~ll~a~~~~g~----~~---~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~--~~~ll 588 (784)
..++-+....+ .. +|..-|+..+.+| |+. .--.+|..-+.... |... =.+..
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry---PnS-------------~Ya~dA~~~i~~~~---d~LA~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY---PNS-------------RYAPDAKARIVKLN---DALAGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHC---CCC-------------cchhhHHHHHHHHH---HHHHHHHHHHH
Confidence 44442222221 12 2333333333322 221 11122221111110 0000 12345
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044131 589 GACMIHKDTNLARVASEKLFELDPENVG---YHVLLSNIYSAERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~~l~p~~~~---~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 645 (784)
.-|.++|.+.-|..-++.+++--|+.+. .+..|.++|.+.|..++|.+..+-+....
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~ 234 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANY 234 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcC
Confidence 5688899999999999999987666554 45677888999999999999988887644
No 273
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=88.37 E-value=32 Score=35.16 Aligned_cols=66 Identities=15% Similarity=0.069 Sum_probs=31.9
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCC-C--CHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCH
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSH-K--SEVTWNTMISGY---GLHGHGLEALQLFSEMLHSGIRPSG 513 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~--~~~~~~~li~~~---~~~g~~~~A~~~~~~m~~~g~~pd~ 513 (784)
+.++-.-+....+.++.+.+.+++.+|.. . ....+...+..+ ..+ ....|...+..+....+.|..
T Consensus 121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 33333344445556666666666666542 1 223444444433 232 234566666666555455444
No 274
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.35 E-value=0.62 Score=29.82 Aligned_cols=31 Identities=26% Similarity=0.132 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
+|..+...+...|+.+.|...++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777788888888888888888888774
No 275
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.97 E-value=1.6 Score=31.60 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=28.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 586 ALLGACMIHKDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 586 ~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
.|.-++.+.|+++.|.+..+.+++++|+|..+-.+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 455688999999999999999999999987655444
No 276
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.66 E-value=3.5 Score=41.55 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=58.7
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLH-----SGIRPSGVTFLS 518 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t~~~ 518 (784)
..++..++..+..+|+.+.+.+.++++.. -|...|..+|.+|.+.|+...|+..|+++.+ .|+.|-..+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 44677888899999999999999888763 4778999999999999999999999998875 466666555443
Q ss_pred H
Q 044131 519 V 519 (784)
Q Consensus 519 l 519 (784)
.
T Consensus 233 y 233 (280)
T COG3629 233 Y 233 (280)
T ss_pred H
Confidence 3
No 277
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.65 E-value=16 Score=37.31 Aligned_cols=175 Identities=9% Similarity=0.082 Sum_probs=113.7
Q ss_pred HhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH--HHH--HHHHHHccCCHH
Q 044131 458 AKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT--FLS--VLYACSHAGLVR 530 (784)
Q Consensus 458 ~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t--~~~--ll~a~~~~g~~~ 530 (784)
.-.|+..+|...++++.+ .|..+|+--=.+|..+|+...-...+++.... ..||... |.. +..++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 346788888888887763 58889999999999999999999999998865 3555533 322 223456789999
Q ss_pred HHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCC--CC-----CHHHHHHHHHHHHhcCCHHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLAV--EP-----GPAVWGALLGACMIHKDTNLARV 602 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~~--~p-----~~~~~~~ll~a~~~~g~~~~a~~ 602 (784)
+|.+.-++.. .+.|. .-.-.+....+--.|+..|+.+++.+-.- +. ...-|..-+ .+...+.++.|+.
T Consensus 193 dAEk~A~ral---qiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al-~~iE~aeye~ale 268 (491)
T KOG2610|consen 193 DAEKQADRAL---QINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTAL-FHIEGAEYEKALE 268 (491)
T ss_pred hHHHHHHhhc---cCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHH-hhhcccchhHHHH
Confidence 9999888765 44443 33344567778889999999999987531 10 111222211 1233478999999
Q ss_pred HHHHHh--cCCCCCcch---HHHHHHHHHhcCChHHHHHH
Q 044131 603 ASEKLF--ELDPENVGY---HVLLSNIYSAERDYLQAATV 637 (784)
Q Consensus 603 ~~~~~~--~l~p~~~~~---~~~l~~~y~~~g~~~~a~~~ 637 (784)
+|++-+ +++.+|... |.-+-.+......|..-.++
T Consensus 269 IyD~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~l 308 (491)
T KOG2610|consen 269 IYDREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKL 308 (491)
T ss_pred HHHHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhh
Confidence 987543 466666532 33334444444444444433
No 278
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.54 E-value=2.2 Score=38.84 Aligned_cols=52 Identities=17% Similarity=0.116 Sum_probs=30.4
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 593 IHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
.+++.+.++.++..+.-+.|+.+..-..-++++...|+|.+|.++++.+.++
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 4455555555555555566666665556666666666666666665555443
No 279
>PRK09687 putative lyase; Provisional
Probab=87.42 E-value=37 Score=34.75 Aligned_cols=236 Identities=10% Similarity=0.045 Sum_probs=108.3
Q ss_pred CcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCCh----hHHHHHHHHHHhCCCCCCHHHHHHH
Q 044131 343 VSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLT----EEAISLFQEMQASKVAPNPVTVSSI 418 (784)
Q Consensus 343 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~l~~~m~~~g~~pd~~t~~~l 418 (784)
.+|..+....+..+...|..+....+..-....|...=..-+.++.+.|+. ++++..+..+... .|+...-.+.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 344445555555555555443333333333444554444555566666653 3566666665332 4555555555
Q ss_pred HHHHhhhCchHH--HHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcC-CHH
Q 044131 419 LSACAQLGAISL--GKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHG-HGL 495 (784)
Q Consensus 419 l~a~~~~~~~~~--a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g-~~~ 495 (784)
+.++...+.... .......+...-..++..+-...+.++++.|+.+....+..-+..+|...-...+.++++.+ +..
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 555544432110 11122222222223345555555666666665433333333334444444444444444432 133
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 044131 496 EALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL 575 (784)
Q Consensus 496 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m 575 (784)
++...+..+.. .+|...-...+.++.+.|. .++...+-...++ ++ .....+.+++.-|.- +|...+.++
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~----~~--~~~~a~~ALg~ig~~-~a~p~L~~l 260 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKK----GT--VGDLIIEAAGELGDK-TLLPVLDTL 260 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcC----Cc--hHHHHHHHHHhcCCH-hHHHHHHHH
Confidence 45555555553 3455555555566666555 3344444443322 11 223455555555553 455555444
Q ss_pred C-CCCCHHHHHHHHHHH
Q 044131 576 A-VEPGPAVWGALLGAC 591 (784)
Q Consensus 576 ~-~~p~~~~~~~ll~a~ 591 (784)
- -.||..+-...+.+|
T Consensus 261 ~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 261 LYKFDDNEIITKAIDKL 277 (280)
T ss_pred HhhCCChhHHHHHHHHH
Confidence 2 244444444444433
No 280
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=87.40 E-value=25 Score=35.28 Aligned_cols=56 Identities=16% Similarity=0.039 Sum_probs=50.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..+|...|.+.+|.++.++++.++|-+...+-.|.++|+..|+--+|.+-++.+.+
T Consensus 286 a~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 286 ARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 35788999999999999999999999999999999999999998888888877754
No 281
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=87.29 E-value=3.8 Score=41.27 Aligned_cols=76 Identities=16% Similarity=0.225 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHh-----CCCCCCHHHHHH
Q 044131 346 SSVLTALSTVYSRLNEMEAARKLFDESSEK---SLASWNAMIAGYTQNGLTEEAISLFQEMQA-----SKVAPNPVTVSS 417 (784)
Q Consensus 346 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~pd~~t~~~ 417 (784)
..++..++..+..+|+.+.+.+.+++.... +...|..+|.+|.++|+...|+..|+++.. .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 456788999999999999999999987654 667999999999999999999999999876 578887766655
Q ss_pred HHHH
Q 044131 418 ILSA 421 (784)
Q Consensus 418 ll~a 421 (784)
...+
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5444
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=87.07 E-value=0.81 Score=29.97 Aligned_cols=25 Identities=16% Similarity=-0.068 Sum_probs=13.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 584 WGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
|..|...|...|++++|+.++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555555555555555543
No 283
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=86.25 E-value=87 Score=37.91 Aligned_cols=116 Identities=18% Similarity=0.110 Sum_probs=61.9
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 044131 453 LIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREG 532 (784)
Q Consensus 453 Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a 532 (784)
.++.--+.|.+.+|+.++..=.++--..|.+...-+.+.+.+++|.-.|+..-+ ..-.+.|+-.+|+++++
T Consensus 914 ~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~ 984 (1265)
T KOG1920|consen 914 CKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREA 984 (1265)
T ss_pred HHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHH
Confidence 334444555555555554332222222333333333445666676666664322 12346677778888888
Q ss_pred HHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 044131 533 DEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEP 579 (784)
Q Consensus 533 ~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p 579 (784)
+.+-.++.. +-.--..+--.|+..+...|+.-||-++.....-.|
T Consensus 985 l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 985 LSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 877776631 111112233567777777788777777776654333
No 284
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=86.04 E-value=2.2 Score=43.20 Aligned_cols=93 Identities=13% Similarity=0.070 Sum_probs=64.9
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCC
Q 044131 520 LYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGLA-VEPG-PAVWGALLGACMIHKD 596 (784)
Q Consensus 520 l~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~-~~~~~~ll~a~~~~g~ 596 (784)
.+-|.+.|.+++|...|..-. .+.| +...|..-.-+|.+..++.-|+.=.+..- +... .-.|.--+.|-...|+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence 556778889999998888665 5566 67777777778888888877765554431 1111 2245555555566788
Q ss_pred HHHHHHHHHHHhcCCCCCc
Q 044131 597 TNLARVASEKLFELDPENV 615 (784)
Q Consensus 597 ~~~a~~~~~~~~~l~p~~~ 615 (784)
.++|+.-++.+++++|++.
T Consensus 181 ~~EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 181 NMEAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHHHhHHHHHhhCcccH
Confidence 8889999999999999853
No 285
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=85.95 E-value=13 Score=38.22 Aligned_cols=61 Identities=20% Similarity=0.294 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHCCCCCCHH-HHHH-HHHHHHccCC--HHHHHHHHHHhHHhcCCCCCcchHHHHH
Q 044131 495 LEALQLFSEMLHSGIRPSGV-TFLS-VLYACSHAGL--VREGDEIFQSMIHDHGFKPLAEHYACMV 556 (784)
Q Consensus 495 ~~A~~~~~~m~~~g~~pd~~-t~~~-ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~~~~~~~lv 556 (784)
+++..+|+.+...|+..+.. -+.+ +|..+..... +.++.++++.+.+. |+++...+|..+.
T Consensus 160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lG 224 (297)
T PF13170_consen 160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHH
Confidence 56777888888878766433 3433 3333332222 45778888888654 8888888876554
No 286
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=85.83 E-value=24 Score=31.00 Aligned_cols=82 Identities=16% Similarity=0.216 Sum_probs=47.8
Q ss_pred hcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 044131 459 KCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQS 538 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 538 (784)
+||++......+-.+. .+..-....+......|+-+.-.+++.++... -+|++.....+.+||.+.|+..++.+++..
T Consensus 68 ~C~NlKrVi~C~~~~n-~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRN-KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp G-S-THHHHHHHHHTT----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhc-chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 4455444444443332 22233444566677788888888888877653 367788888888888888888888888887
Q ss_pred hHHh
Q 044131 539 MIHD 542 (784)
Q Consensus 539 m~~~ 542 (784)
..+.
T Consensus 146 ACek 149 (161)
T PF09205_consen 146 ACEK 149 (161)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 7653
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.83 E-value=51 Score=34.83 Aligned_cols=150 Identities=12% Similarity=-0.044 Sum_probs=75.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCHHHHHHHHHHhHHh-cCCCCCcch
Q 044131 476 KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP---SGVTFLSVLYACSHAGLVREGDEIFQSMIHD-HGFKPLAEH 551 (784)
Q Consensus 476 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p~~~~ 551 (784)
....+|..++..+.+.|+++.|...+.++...+..+ +......-....-..|+.++|...++...+. ..-..+...
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~ 223 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence 344577777788888888888888887777643211 2223333344455667777777777766642 110101111
Q ss_pred HHHHHHHHHhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHh------cCCHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 044131 552 YACMVDILGRAGQLEKALEF-IKGLAVEPGPAVWGALLGACMI------HKDTNLARVASEKLFELDPENVGYHVLLSNI 624 (784)
Q Consensus 552 ~~~lv~~l~r~g~~~eA~~~-~~~m~~~p~~~~~~~ll~a~~~------~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 624 (784)
...+...+.. ..+..... ........-..++..+..-+.. +++.+.+...++.+.++.|+....+..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111100000 00000000 0000000001123333333333 3788889999999999999888777777766
Q ss_pred HHh
Q 044131 625 YSA 627 (784)
Q Consensus 625 y~~ 627 (784)
+..
T Consensus 302 ~~~ 304 (352)
T PF02259_consen 302 NDK 304 (352)
T ss_pred HHH
Confidence 543
No 288
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.37 E-value=13 Score=41.86 Aligned_cols=181 Identities=22% Similarity=0.332 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH----------HHHHHHHHHhhhCchHHHHHHHHHHHHc-C-CCCc
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPV----------TVSSILSACAQLGAISLGKWVHELVKSR-N-FESN 446 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----------t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g-~~~~ 446 (784)
+-..|+-.|-...+++..+++.+.+++ -||.. .|.-.|+-=-+-|+-++|..+.--+++. | +.|
T Consensus 203 ~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~eg~vap- 278 (1226)
T KOG4279|consen 203 TVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKEGPVAP- 278 (1226)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhcCCCCC-
Confidence 344555667777777777777777765 24332 2222233223456667776665555443 2 233
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHH
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT---FLSVLYAC 523 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t---~~~ll~a~ 523 (784)
+||+-||++- +.|- +-+.|...+..+.|++.|++.-+ +.|+..+ +..||.|
T Consensus 279 --------Dm~Cl~GRIY------KDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a- 332 (1226)
T KOG4279|consen 279 --------DMYCLCGRIY------KDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA- 332 (1226)
T ss_pred --------ceeeeechhh------hhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH-
Confidence 4677777643 2221 12334455566778888888776 6777644 4444443
Q ss_pred HccCC-HHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 044131 524 SHAGL-VREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARV 602 (784)
Q Consensus 524 ~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~ 602 (784)
+|. ++...++ +.+ | -.|-.+++|.|.++.-.++++- ...+.+-....|+..|.+
T Consensus 333 --aG~~Fens~El-q~I----g--------mkLn~LlgrKG~leklq~YWdV----------~~y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 333 --AGEHFENSLEL-QQI----G--------MKLNSLLGRKGALEKLQEYWDV----------ATYFEASVLANDYQKAIQ 387 (1226)
T ss_pred --hhhhccchHHH-HHH----H--------HHHHHHhhccchHHHHHHHHhH----------HHhhhhhhhccCHHHHHH
Confidence 222 1111111 111 1 1244578899999888777652 345666777899999999
Q ss_pred HHHHHhcCCCCC
Q 044131 603 ASEKLFELDPEN 614 (784)
Q Consensus 603 ~~~~~~~l~p~~ 614 (784)
+++.++++.|..
T Consensus 388 Aae~mfKLk~P~ 399 (1226)
T KOG4279|consen 388 AAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHhccCCce
Confidence 999999999863
No 289
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=85.24 E-value=4.5 Score=36.19 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=42.4
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044131 593 IHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 645 (784)
..++.+.++.+...+.-+.|+.+..-..-+.++...|+|+||.++++...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 37778888888888888888888888888888888888888888887776654
No 290
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=84.98 E-value=2.1 Score=28.00 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEML 505 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (784)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666666777777777777776643
No 291
>PRK11619 lytic murein transglycosylase; Provisional
Probab=84.87 E-value=83 Score=36.47 Aligned_cols=265 Identities=10% Similarity=0.055 Sum_probs=135.8
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Q 044131 346 SSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQL 425 (784)
Q Consensus 346 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 425 (784)
...-..-+..+.+.+++....+ |..-+..+...-.....+....|+.++|....+.+-..| ...+.....++..+.+.
T Consensus 99 ~~Lr~~~l~~La~~~~w~~~~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~ 176 (644)
T PRK11619 99 RSLQSRFVNELARREDWRGLLA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQS 176 (644)
T ss_pred HHHHHHHHHHHHHccCHHHHHH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHc
Confidence 3344444555566777777777 432233455555666677777888777777777765555 22344556666666654
Q ss_pred CchHHHH--HHHHHHHHcC-----------CCCc-hhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHH--
Q 044131 426 GAISLGK--WVHELVKSRN-----------FESN-IYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYG-- 489 (784)
Q Consensus 426 ~~~~~a~--~i~~~~~~~g-----------~~~~-~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~-- 489 (784)
|.+.... +=+..+...| ++++ ......++..+.+ ...+...+.... ++...-...+-++.
T Consensus 177 g~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~---p~~~~~~~~~~~-~~~~~~~~~~~~l~Rl 252 (644)
T PRK11619 177 GKQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQND---PNTVETFARTTG-PTDFTRQMAAVAFASV 252 (644)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHC---HHHHHHHhhccC-CChhhHHHHHHHHHHH
Confidence 4433221 1111111111 1111 1122233333322 222222222221 22211111222222
Q ss_pred HcCCHHHHHHHHHHHHHC-CCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHH
Q 044131 490 LHGHGLEALQLFSEMLHS-GIRPSGV--TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLE 566 (784)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~-g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~ 566 (784)
...+.+.|..++.+.... +..+... ....+.......+..+++...++..... ..+.....--+..-.+.++++
T Consensus 253 ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 253 ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHH
Confidence 235568888888877543 3333332 2233333333332366777777765321 124444444555555899999
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 567 KALEFIKGLAV--EPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 567 eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
.+...|..|+- .-...-.--+..+....|+.+.|...++++.. + .++|-.|+.
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~--~--~~fYG~LAa 384 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ--Q--RGFYPMVAA 384 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CCcHHHHHH
Confidence 99999999862 21222223355566668999999999999744 2 347777653
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=84.82 E-value=15 Score=32.95 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=54.9
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 044131 525 HAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLAVE-PGPAVWGALLGACMIHKDTNLARV 602 (784)
Q Consensus 525 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~-p~~~~~~~ll~a~~~~g~~~~a~~ 602 (784)
..++.+++..+++.|. -+.|+ .+.-.+-+-.+.+.|+++||..++++..-. |....-.+|+.-|.....-..=..
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp~Wr~ 98 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDAEWHV 98 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCChHHHH
Confidence 3777888888888775 55666 333344455677889999999999888533 344455667766665444344445
Q ss_pred HHHHHhcCCCC
Q 044131 603 ASEKLFELDPE 613 (784)
Q Consensus 603 ~~~~~~~l~p~ 613 (784)
.+..+++-+++
T Consensus 99 ~A~~~le~~~~ 109 (153)
T TIGR02561 99 HADEVLARDAD 109 (153)
T ss_pred HHHHHHHhCCC
Confidence 55555555443
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.71 E-value=2.2 Score=27.18 Aligned_cols=28 Identities=21% Similarity=0.263 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
.+|..+...|...|++++|+..|++.++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3567777777777777777777777776
No 294
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=84.01 E-value=3.2 Score=28.50 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHS 507 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (784)
+|..+...|.+.|++++|+++|++.++.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556666677777777777777777663
No 295
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=83.58 E-value=43 Score=32.16 Aligned_cols=158 Identities=15% Similarity=0.121 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVD 557 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 557 (784)
..+|-+.--+...|+++.|.+.|+...+. .|. ..++..-.-++...|+++-|.+-|...-++-.-.|-...|--++
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~- 176 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN- 176 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH-
Confidence 45666666666677777777777776663 232 22333333344556677766665554433212222222222221
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-------cchHHHHHHHHHhcCC
Q 044131 558 ILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPEN-------VGYHVLLSNIYSAERD 630 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~-------~~~~~~l~~~y~~~g~ 630 (784)
.+.-+..+|..-+.+--.+-|..-|+.-+-.+..-.=-+ +.+++++.+-..++ ..+|.-|+..|...|.
T Consensus 177 --E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 177 --EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred --HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 223345555433322111344455555544333211111 11222222211111 3478889999999999
Q ss_pred hHHHHHHHHHHHh
Q 044131 631 YLQAATVRQVVKK 643 (784)
Q Consensus 631 ~~~a~~~~~~m~~ 643 (784)
.++|..+++....
T Consensus 253 ~~~A~~LfKLaia 265 (297)
T COG4785 253 LDEATALFKLAVA 265 (297)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998654
No 296
>PRK12798 chemotaxis protein; Reviewed
Probab=83.29 E-value=68 Score=34.23 Aligned_cols=205 Identities=18% Similarity=0.254 Sum_probs=131.5
Q ss_pred cCCHHHHHHHHhhcCC----CCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHH
Q 044131 460 CGNIVEARELFDLMSH----KSEVTWNTMISGY-GLHGHGLEALQLFSEMLHSGIRPSG----VTFLSVLYACSHAGLVR 530 (784)
Q Consensus 460 ~g~~~~A~~~f~~~~~----~~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~pd~----~t~~~ll~a~~~~g~~~ 530 (784)
.|+.++|.+.+..+.. +....+-+|+.+- ....+..+|+++|++..- .-|-. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5888888888888863 4555777777664 445678999999998876 34543 33444555678899999
Q ss_pred HHHHHHHHhHHhcCCCCCcchH-HHHHHHHHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPLAEHY-ACMVDILGRAG---QLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEK 606 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~~~~~-~~lv~~l~r~g---~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 606 (784)
++..+-....+.|.-.|=...| .-++..+.+.+ ..+.-.+++..|.-.--..+|..+...-...|+.+.|..+.++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 9888888777777666654333 23334444333 4445555566664222345888888889999999999999999
Q ss_pred HhcCCCCCcchHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHH
Q 044131 607 LFELDPENVGYHVLLSNIYSAE-----RDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAML 681 (784)
Q Consensus 607 ~~~l~p~~~~~~~~l~~~y~~~-----g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l 681 (784)
+..+.+. ...-...+++|... .+.+++.+....+. .++.+|+-..+....
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~------------------------~~~L~~~Dr~Ll~AA 337 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQID------------------------RDKLSERDRALLEAA 337 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcCC------------------------hhhCChhhHHHHHHH
Confidence 9998743 33444555666543 33445444443322 223456656666555
Q ss_pred HHHHHHHHHc
Q 044131 682 EKLNGKMREA 691 (784)
Q Consensus 682 ~~l~~~~~~~ 691 (784)
..+-.++++.
T Consensus 338 ~~va~~V~~~ 347 (421)
T PRK12798 338 RSVARQVRRA 347 (421)
T ss_pred HHHHHHHhcC
Confidence 5555555543
No 297
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=82.74 E-value=22 Score=29.36 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044131 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHS 507 (784)
Q Consensus 428 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (784)
.++|..|-+.+...+-. ...+.-.-+..+...|++++|..+.+....||...|-++-. .+.|..+++..-+.+|..+
T Consensus 21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 45555555555444311 22233333445678899999999999999999999988855 4678888888888888888
Q ss_pred CCCCCHHHHHH
Q 044131 508 GIRPSGVTFLS 518 (784)
Q Consensus 508 g~~pd~~t~~~ 518 (784)
| .|...+|..
T Consensus 98 g-~p~lq~Faa 107 (115)
T TIGR02508 98 G-DPRLQTFVA 107 (115)
T ss_pred C-CHHHHHHHH
Confidence 7 666666654
No 298
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=82.02 E-value=40 Score=34.95 Aligned_cols=126 Identities=14% Similarity=-0.015 Sum_probs=69.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHccCCHHHHHHHHHHh---HHhcCCCCCcchHHHH
Q 044131 484 MISGYGLHGHGLEALQLFSEMLHSGIRP-----SGVTFLSVLYACSHAGLVREGDEIFQSM---IHDHGFKPLAEHYACM 555 (784)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~p-----d~~t~~~ll~a~~~~g~~~~a~~~~~~m---~~~~~~~p~~~~~~~l 555 (784)
|..++.-.+.++++++.|+....--... .-..+.+|-+-+....++++|.-+.... ...+++.--..-|.++
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 4455555566677777776655421111 1234666666666666777666554433 2223333222223332
Q ss_pred -----HHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 044131 556 -----VDILGRAGQLEKALEFIKGL-------AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFE 609 (784)
Q Consensus 556 -----v~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 609 (784)
.-+|-..|++-+|.+..++. +-.|- ......+...|+..|+.|.|..-|+.+..
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 23445556665555555432 22221 22556677888888998888888887765
No 299
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.89 E-value=47 Score=31.41 Aligned_cols=114 Identities=14% Similarity=0.120 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHCCCCCCHHHHH--HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHH-----HHHHHHhcCCHHHH
Q 044131 496 EALQLFSEMLHSGIRPSGVTFL--SVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYAC-----MVDILGRAGQLEKA 568 (784)
Q Consensus 496 ~A~~~~~~m~~~g~~pd~~t~~--~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-----lv~~l~r~g~~~eA 568 (784)
+.....+++....-+...-++. .+..+....|++++|...++.... .|..+.+.. |...+...|.+|+|
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~----~t~De~lk~l~~lRLArvq~q~~k~D~A 145 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA----QTKDENLKALAALRLARVQLQQKKADAA 145 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 4555555665542222222222 234457778888888888886652 233344444 34567788999999
Q ss_pred HHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 569 LEFIKGLAVEPGPA--VWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 569 ~~~~~~m~~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
+..++... .++-. .-..-..++...|+-+.|+..|+++++.+++.
T Consensus 146 L~~L~t~~-~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 146 LKTLDTIK-EESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred HHHHhccc-cccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 99998654 22211 22223457888999999999999999987654
No 300
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=80.99 E-value=84 Score=33.71 Aligned_cols=141 Identities=14% Similarity=0.098 Sum_probs=100.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchH-HH
Q 044131 477 SEVTWNTMISGYGLHGHGLEALQLFSEMLHSG-IRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHY-AC 554 (784)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~ 554 (784)
-...|...|..-.+..-.+.|..+|-+..+.| +.++...+++.+.-+ ..|+...|..+|+.-...+ ||...| .-
T Consensus 396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f---~d~~~y~~k 471 (660)
T COG5107 396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKF---PDSTLYKEK 471 (660)
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhC---CCchHHHHH
Confidence 34567777777777777888888888888888 566766777776644 4577788888888765443 443333 44
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-C-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 555 MVDILGRAGQLEKALEFIKGL-A-VEPG--PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 555 lv~~l~r~g~~~eA~~~~~~m-~-~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
.++.+.+-++-+.|..+|+.. + +..+ ..+|..++.--..-|++..+..+-++..++-|.....-+.+
T Consensus 472 yl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~ 542 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFT 542 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHH
Confidence 567778888888888888854 1 3333 44888888888888888888888888888888765444433
No 301
>PRK10941 hypothetical protein; Provisional
Probab=80.69 E-value=9.8 Score=38.44 Aligned_cols=61 Identities=26% Similarity=0.135 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..+.|-.++...++++.|.++.+.++.+.|+++.-.--.+-+|++.|.+..|..-++.--+
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 4567778899999999999999999999999998888899999999999999987665543
No 302
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=80.66 E-value=5.7 Score=40.35 Aligned_cols=89 Identities=18% Similarity=0.122 Sum_probs=62.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcC
Q 044131 485 ISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAG 563 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g 563 (784)
..-|.+.|.+++|+..|.+... +.| |.+++..-..||.+...+..|..-....+. .-...+.+|.|.|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHH
Confidence 3568999999999999998877 567 999999999999999888877766665542 1123456666665
Q ss_pred -------CHHHHHHHHHhC-CCCCCHHHH
Q 044131 564 -------QLEKALEFIKGL-AVEPGPAVW 584 (784)
Q Consensus 564 -------~~~eA~~~~~~m-~~~p~~~~~ 584 (784)
.++||.+=.+.. .++|+..-.
T Consensus 173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 173 QARESLGNNMEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHHhhHHHHHHhHHHHHhhCcccHHH
Confidence 455555444443 367775433
No 303
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=80.57 E-value=48 Score=30.69 Aligned_cols=54 Identities=13% Similarity=0.157 Sum_probs=26.9
Q ss_pred HHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHH
Q 044131 250 GLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLL 303 (784)
Q Consensus 250 ~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 303 (784)
.+++.+...|++-+|.++.+....-+.+.-..++.+-.+.++..--..+|+-..
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555666666666655444334444445555555555444444444333
No 304
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.98 E-value=62 Score=31.56 Aligned_cols=69 Identities=26% Similarity=0.360 Sum_probs=43.3
Q ss_pred HHHHhcCCHHHHHHHHHhCC---CCCCHHHHHH---HH--HHHHhc-CCHHHHHHHHHHHhcCCCCCcc--hHHHHHHHH
Q 044131 557 DILGRAGQLEKALEFIKGLA---VEPGPAVWGA---LL--GACMIH-KDTNLARVASEKLFELDPENVG--YHVLLSNIY 625 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m~---~~p~~~~~~~---ll--~a~~~~-g~~~~a~~~~~~~~~l~p~~~~--~~~~l~~~y 625 (784)
+.-+..|++.+|.+++++.. +..+..-|.. ++ +.|... .|.--+.+++++-.+++|.-.. -+-+|-.+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~ 241 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLL 241 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHH
Confidence 34456788899999988762 3333333322 22 345544 7888889999999999996443 334444443
No 305
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=79.89 E-value=1.5 Score=39.57 Aligned_cols=86 Identities=9% Similarity=0.101 Sum_probs=65.6
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchH
Q 044131 113 FVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQD 192 (784)
Q Consensus 113 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 192 (784)
.+++.+.+.+.+.....+++.+.+.+...+....+.|+.+|++.++.+...+.++.... .-...++..+-+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45667777778888888888888877677889999999999999988888888884333 444667777888888888
Q ss_pred HHHHHHHHH
Q 044131 193 SIWVFGDMV 201 (784)
Q Consensus 193 A~~l~~~m~ 201 (784)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 888887763
No 306
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.80 E-value=60 Score=34.26 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 580 GPAVWGALLGACMIHKDTNLARVASEKLFELDP----ENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 580 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p----~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...+|..+...|+++|+++.|..++.++...++ ..+...+.-+.+....|+.++|....+...+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445899999999999999999999999998653 2466777789999999999999998776665
No 307
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.94 E-value=17 Score=33.84 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC----hHHHHHHHHHH
Q 044131 598 NLARVASEKLFELDPENVGYHVLLSNIYSAERD----YLQAATVRQVV 641 (784)
Q Consensus 598 ~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~----~~~a~~~~~~m 641 (784)
+.|..-+++++.++|+...++.++++.|...+. -.+|...|++.
T Consensus 52 edAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 52 EDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 456777888888999999999999999887664 33444555443
No 308
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.23 E-value=5.2 Score=25.25 Aligned_cols=27 Identities=26% Similarity=0.426 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
.|..+...|...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666667777777777777777665
No 309
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=77.92 E-value=4.3 Score=27.08 Aligned_cols=26 Identities=15% Similarity=-0.014 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
+++.|..++...|++++|+.++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 34444444444555555555444444
No 310
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=77.89 E-value=3.8 Score=24.45 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=19.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHH
Q 044131 616 GYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 616 ~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
.....|+.+|...|++++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 356788899999999999988764
No 311
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.23 E-value=26 Score=32.29 Aligned_cols=53 Identities=9% Similarity=0.074 Sum_probs=26.6
Q ss_pred hcCCHHHHHHHHhhcCC-CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044131 459 KCGNIVEARELFDLMSH-KS---EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP 511 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~~-~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 511 (784)
..|.+++.....+.+.. .+ ...-.+|.-+-.+.|++.+|.+.|.++...-..|
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 34555555555544442 11 1233344444456666666666666665543344
No 312
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=76.91 E-value=54 Score=33.81 Aligned_cols=126 Identities=10% Similarity=0.197 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh--h----CchHHHHHHHHHHHHcCC---CCchhhHhHHHHHHHhcCCH-
Q 044131 394 EEAISLFQEMQASKVAPNPVTVSSILSACAQ--L----GAISLGKWVHELVKSRNF---ESNIYVSTALIDMYAKCGNI- 463 (784)
Q Consensus 394 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~--~----~~~~~a~~i~~~~~~~g~---~~~~~~~~~Li~~y~k~g~~- 463 (784)
++.+.+++.|.+.|++-+..+|.+.+..... . .....++.+|+.|.+... .++-.++.+|+.+ ...++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 4556788889999998888888775444433 1 245678899999987642 2344455555443 33333
Q ss_pred ---HHHHHHHhhcC-----CCCHHHHHHHHHHHHHcC-C--HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044131 464 ---VEARELFDLMS-----HKSEVTWNTMISGYGLHG-H--GLEALQLFSEMLHSGIRPSGVTFLSVLY 521 (784)
Q Consensus 464 ---~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g-~--~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 521 (784)
+.+...|+.+. +.|..-+.+-|-++.... . ...+.++++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 34455555544 234444444444433221 1 4578999999999999988877665543
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=76.79 E-value=2 Score=38.89 Aligned_cols=86 Identities=16% Similarity=0.104 Sum_probs=63.4
Q ss_pred hHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchH
Q 044131 215 AVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTES 294 (784)
Q Consensus 215 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~ 294 (784)
.++..+.+.+.+.....+++.+++.+...+....+.|+.+|++.++.+...++++.... .-...++..+.+.|.+++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 45666666777777777788887777677889999999999999888888888874433 444567777778888888
Q ss_pred HHHHHHHHH
Q 044131 295 SLRLFRQLL 303 (784)
Q Consensus 295 A~~l~~~m~ 303 (784)
|.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 888777653
No 314
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=76.73 E-value=51 Score=31.01 Aligned_cols=58 Identities=16% Similarity=0.091 Sum_probs=35.0
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHhhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 449 VSTALIDMYAKCGNIVEARELFDLMSHKS------EVTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 449 ~~~~Li~~y~k~g~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
.+..+.+.|.+.|+++.|.+.|.++.+.. +..+-.+|......|++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566667777777777777776665321 22455556666666666666666555543
No 315
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=76.63 E-value=21 Score=33.62 Aligned_cols=95 Identities=14% Similarity=0.048 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHhcCC--CCC----cc
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV--TFLSVLYACSHAGLVREGDEIFQSMIHDHGF--KPL----AE 550 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~----~~ 550 (784)
..|..+..-|.+.|+.++|++.|.++.+....|... .+..++..+...|++.....+..+...-..- .++ ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 367778888999999999999999999876666654 4677888888899998888887776432111 111 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGL 575 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m 575 (784)
.|..+. +...|++.+|-+.|-..
T Consensus 117 ~~~gL~--~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLA--NLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHH--HHHhchHHHHHHHHHcc
Confidence 233332 23467888888887655
No 316
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.47 E-value=12 Score=34.80 Aligned_cols=53 Identities=21% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCCCC-cchHHHHHHHHHhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 544 GFKPL-AEHYACMVDILGRAGQ----LEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 544 ~~~p~-~~~~~~lv~~l~r~g~----~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
.+.|+ ...+.|+..+|...+. ..+|.++ +++|...++++.+.+|+|..+.
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~-------------------------F~kA~~~FqkAv~~~P~ne~Y~ 117 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEY-------------------------FEKATEYFQKAVDEDPNNELYR 117 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHH-------------------------HHHHHHHHHHHHHH-TT-HHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHH-------------------------HHHHHHHHHHHHhcCCCcHHHH
Confidence 45676 4677777777765542 2233333 3567778888888888876544
Q ss_pred HHH
Q 044131 619 VLL 621 (784)
Q Consensus 619 ~~l 621 (784)
..|
T Consensus 118 ksL 120 (186)
T PF06552_consen 118 KSL 120 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 317
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=76.11 E-value=5 Score=24.17 Aligned_cols=31 Identities=32% Similarity=0.212 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
+|..+...+...|+.+.|...+++.++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666666777777777777777776664
No 318
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.96 E-value=1.6e+02 Score=34.09 Aligned_cols=141 Identities=9% Similarity=-0.013 Sum_probs=83.6
Q ss_pred hhhHhHHHHHhhCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhc
Q 044131 41 LSTVTKLAHRLSDFKATCYARALFFSIPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASA 120 (784)
Q Consensus 41 ~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 120 (784)
..++...|+-|.-.|+.++|-...-.|-..+..-|---+.-+...++...... -+....-+.+...|..+|..+..
T Consensus 392 ~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~----~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 392 KKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP----YLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc----cCCCCCcccCchHHHHHHHHHHH
Confidence 44577778888888888888888888888888888888888887777665333 33333333566678888877765
Q ss_pred CCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHH
Q 044131 121 CCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDM 200 (784)
Q Consensus 121 ~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 200 (784)
..-..+++.+.+ ++++.+.....++.- ..-|++-.+++ ..-..|..-|...+++..|+.++-..
T Consensus 468 ----~~~~~F~e~i~~--Wp~~Lys~l~iisa~---------~~q~~q~Se~~-~L~e~La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 468 ----SDVKGFLELIKE--WPGHLYSVLTIISAT---------EPQIKQNSEST-ALLEVLAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred ----HHHHHHHHHHHh--CChhhhhhhHHHhhc---------chHHHhhccch-hHHHHHHHHHHHccChHHHHHHHHhc
Confidence 222333333333 234444433333321 11111111111 11223777788888888888887665
Q ss_pred H
Q 044131 201 V 201 (784)
Q Consensus 201 ~ 201 (784)
+
T Consensus 532 k 532 (846)
T KOG2066|consen 532 Q 532 (846)
T ss_pred c
Confidence 4
No 319
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=75.76 E-value=2e+02 Score=35.14 Aligned_cols=50 Identities=12% Similarity=-0.076 Sum_probs=22.0
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044131 547 PLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKD 596 (784)
Q Consensus 547 p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~ 596 (784)
++...-...+..|++.|..+.+...+..+-..++..+-...+.++...+.
T Consensus 787 ~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~ 836 (897)
T PRK13800 787 PDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA 836 (897)
T ss_pred CCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc
Confidence 34444455555555555544332223222224444444444444444443
No 320
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.66 E-value=86 Score=30.87 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHH
Q 044131 246 YVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLL 303 (784)
Q Consensus 246 ~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~ 303 (784)
..++.-..+|..+|.++.|-..+++.- -...+-++++|+++|++-.
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAa------------k~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAA------------KALENVKPDDALQLYQRAL 137 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHH------------HHhhcCCHHHHHHHHHHHH
Confidence 345666788999999888877666531 1234556777777777654
No 321
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=75.45 E-value=1.4e+02 Score=33.32 Aligned_cols=179 Identities=13% Similarity=0.072 Sum_probs=95.3
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 044131 345 NSSVLTALSTVYSRLNEMEAARKLFDESSEKS---LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSA 421 (784)
Q Consensus 345 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a 421 (784)
+..+|..-++.-.+.|+.+.+.-+|++..-+- ...|--.+.-....|+.+-|-.++..-.+--++-.+.+-..--.-
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 45577777777778888888888887765441 123444444334447766666665554433222222222112222
Q ss_pred HhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHH---HHHhhcC--CCCHHHHHHHHHH-----HHHc
Q 044131 422 CAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEAR---ELFDLMS--HKSEVTWNTMISG-----YGLH 491 (784)
Q Consensus 422 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~---~~f~~~~--~~~~~~~~~li~~-----~~~~ 491 (784)
+-..|+...|+.+++.+...- +.-+.+-.--+.+--+.|..+.+. .++.... +.+.-..+.+..- +.-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 345667888888887777654 333333344455666777777766 3333322 1222222222222 2234
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044131 492 GHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSH 525 (784)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 525 (784)
++.+.|..++.+|.+. ++++..-|..++.-+..
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~ 487 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFELI 487 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHh
Confidence 6667777777777664 45555555555554433
No 322
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.41 E-value=37 Score=37.61 Aligned_cols=148 Identities=14% Similarity=0.039 Sum_probs=96.2
Q ss_pred hcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHH
Q 044131 459 KCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT-FLSVLYACSHAGLVREGDEIFQ 537 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~ 537 (784)
-.|+++.|..++-.++++ .-+.++.-+...|..++|++ +.||..- |.. ..+.|+++.|.++..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~---------~s~D~d~rFel----al~lgrl~iA~~la~ 661 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALE---------LSTDPDQRFEL----ALKLGRLDIAFDLAV 661 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhh---------cCCChhhhhhh----hhhcCcHHHHHHHHH
Confidence 457777777777766632 23445555666777777765 3333322 222 235688888887766
Q ss_pred HhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch
Q 044131 538 SMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGY 617 (784)
Q Consensus 538 ~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 617 (784)
+.. +..-|..|.++...+|++..|.+.|.+.. -|.+|+-.+...|+-+.-..+....-+-...|..
T Consensus 662 e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~A- 727 (794)
T KOG0276|consen 662 EAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLA- 727 (794)
T ss_pred hhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccchH-
Confidence 542 45678888888889999998888887642 4777777777788877655555555554444332
Q ss_pred HHHHHHHHHhcCChHHHHHHHHH
Q 044131 618 HVLLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 618 ~~~l~~~y~~~g~~~~a~~~~~~ 640 (784)
-..|...|+.+++.++...
T Consensus 728 ----F~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 728 ----FLAYFLSGDYEECLELLIS 746 (794)
T ss_pred ----HHHHHHcCCHHHHHHHHHh
Confidence 2457778888888877643
No 323
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=74.93 E-value=14 Score=35.16 Aligned_cols=74 Identities=24% Similarity=0.232 Sum_probs=49.8
Q ss_pred hcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC----CcchHHHHHHHHHhcCChHHH
Q 044131 561 RAGQLEKALEFIKGLAVEP--GPAVWGALLGACMIHKDTNLARVASEKLFELDPE----NVGYHVLLSNIYSAERDYLQA 634 (784)
Q Consensus 561 r~g~~~eA~~~~~~m~~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a 634 (784)
|.|+ ++|.+.|-.+.-.| +....-..+..+....|.+.++.++.+++++.+. |+..+..|+++|.+.|+++.|
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444 44555555543222 3344455556666688889999999888886532 477888899999999988887
Q ss_pred H
Q 044131 635 A 635 (784)
Q Consensus 635 ~ 635 (784)
-
T Consensus 198 Y 198 (203)
T PF11207_consen 198 Y 198 (203)
T ss_pred h
Confidence 4
No 324
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=74.40 E-value=1.1e+02 Score=32.27 Aligned_cols=115 Identities=19% Similarity=0.214 Sum_probs=85.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCC------CHH--HHHHHHHHHHhcCCHHHHHHHHHHHhcCC---CCC----cch
Q 044131 553 ACMVDILGRAGQLEKALEFIKGLAVEP------GPA--VWGALLGACMIHKDTNLARVASEKLFELD---PEN----VGY 617 (784)
Q Consensus 553 ~~lv~~l~r~g~~~eA~~~~~~m~~~p------~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~l~---p~~----~~~ 617 (784)
..+++.+-..|++++|.+++.+.|++. ... ..---+..|...+|+-.|..+.+++...- |+- ..+
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlky 214 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKY 214 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHH
Confidence 346677889999999999998887432 111 11223468889999999999888876532 321 247
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeC
Q 044131 618 HVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSG 667 (784)
Q Consensus 618 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~ 667 (784)
|.++..++...+.+=++.+.++.+-+.|-.+...--|+++-..+-.|..-
T Consensus 215 Y~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~~vL~~iv~f~~L 264 (439)
T KOG1498|consen 215 YELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWIEVLRSIVSFCVL 264 (439)
T ss_pred HHHHHHhcccccchhhHHHHHHHHhcccccccChhhhhhhhhhheeEEee
Confidence 88999999999999999999999998887777666788877666566553
No 325
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.34 E-value=24 Score=29.08 Aligned_cols=48 Identities=25% Similarity=0.193 Sum_probs=36.2
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHH
Q 044131 572 IKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHV 619 (784)
Q Consensus 572 ~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 619 (784)
+-.+.+-|++.+..+-|.||++-+|+..|.++++-+-..-..+...|-
T Consensus 33 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~ 80 (103)
T cd00923 33 LFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYP 80 (103)
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHH
Confidence 334567899999999999999999999999999976633332333443
No 326
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.19 E-value=30 Score=35.07 Aligned_cols=98 Identities=14% Similarity=0.218 Sum_probs=72.9
Q ss_pred cCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC-C--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 044131 441 RNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH-K--------SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP 511 (784)
Q Consensus 441 ~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 511 (784)
.|.+....+...+++.-....+++++...+-++.. | ..++|-.++.- =+.++++.++..=++-|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk----y~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK----YDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc----cChHHHHHHHhCcchhcccc
Confidence 35555566666777777777888888888776652 2 33444444333 36778999998888999999
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 044131 512 SGVTFLSVLYACSHAGLVREGDEIFQSMIHD 542 (784)
Q Consensus 512 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 542 (784)
|..|++.++..+.+.+++.+|..+...|...
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999988887766543
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=73.38 E-value=8.4 Score=25.61 Aligned_cols=28 Identities=32% Similarity=0.465 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
.+++.|...|...|++++|+.++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3566666677777777777777766554
No 328
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.38 E-value=8.1 Score=44.33 Aligned_cols=117 Identities=17% Similarity=0.182 Sum_probs=80.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 044131 491 HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALE 570 (784)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~ 570 (784)
+.++++.+.+.+...--| -++|.-+.+.|..+-|+.+.+.=..++ ++...+|+++.|++
T Consensus 606 ~k~ydeVl~lI~ns~LvG--------qaiIaYLqKkgypeiAL~FVkD~~tRF-------------~LaLe~gnle~ale 664 (1202)
T KOG0292|consen 606 NKKYDEVLHLIKNSNLVG--------QAIIAYLQKKGYPEIALHFVKDERTRF-------------ELALECGNLEVALE 664 (1202)
T ss_pred hhhhHHHHHHHHhcCccc--------HHHHHHHHhcCCcceeeeeecCcchhe-------------eeehhcCCHHHHHH
Confidence 456666666554433222 134455566777777776665433322 34457899999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 571 FIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 571 ~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
.-++.. |..+|..|......+||.+.|+..|++.-. +..|+-+|.-.|+.+.-.++.+
T Consensus 665 ~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn--------fekLsfLYliTgn~eKL~Km~~ 722 (1202)
T KOG0292|consen 665 AAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRTKN--------FEKLSFLYLITGNLEKLSKMMK 722 (1202)
T ss_pred HHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHhhh--------hhheeEEEEEeCCHHHHHHHHH
Confidence 988764 678999999999999999999999998653 4456667888888776554443
No 329
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.90 E-value=98 Score=30.27 Aligned_cols=18 Identities=22% Similarity=0.412 Sum_probs=11.5
Q ss_pred HHhcCCHHHHHHHHhhcC
Q 044131 457 YAKCGNIVEARELFDLMS 474 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~ 474 (784)
++-.+++++|.++|.+..
T Consensus 24 fgg~~k~eeAadl~~~Aa 41 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAA 41 (288)
T ss_pred cCCCcchHHHHHHHHHHH
Confidence 444557777777776643
No 330
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=72.27 E-value=73 Score=30.75 Aligned_cols=124 Identities=19% Similarity=0.187 Sum_probs=73.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHH
Q 044131 481 WNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYACMV 556 (784)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv 556 (784)
.+.-|+.+.+.++..+|+...++-++.. +.|.-+-..++..++-.|++++|..-++-.. .+.|+ ...|..+|
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHHH
Confidence 3455677778888888888888777652 3455566667788888999999987777654 34444 44454444
Q ss_pred HHHHhcCCHHHHH-HHHHh--CC---CCCCHHHHHH-HHHHHHhc--CCHHHHHHHHHHHhcCCCCCcc
Q 044131 557 DILGRAGQLEKAL-EFIKG--LA---VEPGPAVWGA-LLGACMIH--KDTNLARVASEKLFELDPENVG 616 (784)
Q Consensus 557 ~~l~r~g~~~eA~-~~~~~--m~---~~p~~~~~~~-ll~a~~~~--g~~~~a~~~~~~~~~l~p~~~~ 616 (784)
+. +.+. ++|.. .| -.| ...|-. |+.+..-| |.-+.....-+.+++--|..++
T Consensus 80 r~-------ea~R~evfag~~~Pgflg~p-~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG 140 (273)
T COG4455 80 RC-------EAARNEVFAGGAVPGFLGGP-SPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG 140 (273)
T ss_pred HH-------HHHHHHHhccCCCCCCcCCC-CHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence 32 2221 22321 23 123 334544 44444333 4455566667778887776544
No 331
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=71.64 E-value=86 Score=29.08 Aligned_cols=33 Identities=9% Similarity=0.020 Sum_probs=20.4
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCChHHHHHH
Q 044131 235 LGLKLGFHDHVYVLTGLVSFYSKCGEVERAELL 267 (784)
Q Consensus 235 ~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~ 267 (784)
-+.+.++.|+..++..+++.+.+.|.+..-..+
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql 51 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL 51 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 334556677777777777777766665554433
No 332
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.63 E-value=3.1 Score=42.39 Aligned_cols=89 Identities=15% Similarity=0.175 Sum_probs=67.3
Q ss_pred hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 044131 561 RAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVR 638 (784)
Q Consensus 561 r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~ 638 (784)
..|.+++|++.+.+. ++.|. ...+..=.+++.+.+....|++-+..+++++|+...-|-.-+......|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 345677777776554 34443 4455555667778888888888899999999998888888888888899999999988
Q ss_pred HHHHhCCCccC
Q 044131 639 QVVKKRKLAKA 649 (784)
Q Consensus 639 ~~m~~~~~~k~ 649 (784)
....+.+....
T Consensus 206 ~~a~kld~dE~ 216 (377)
T KOG1308|consen 206 ALACKLDYDEA 216 (377)
T ss_pred HHHHhccccHH
Confidence 88877766543
No 333
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=71.48 E-value=5.9 Score=25.49 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=12.6
Q ss_pred CCchhhHhHHHHHHHhcCCHHHHH
Q 044131 444 ESNIYVSTALIDMYAKCGNIVEAR 467 (784)
Q Consensus 444 ~~~~~~~~~Li~~y~k~g~~~~A~ 467 (784)
|.+..+++.|...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334555555555555555555553
No 334
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=71.26 E-value=1.3e+02 Score=30.81 Aligned_cols=24 Identities=17% Similarity=0.098 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEM 504 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m 504 (784)
.|+.- ...-+.+++++|.+.|+-.
T Consensus 249 LW~~~-~~~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 249 LWNKG-KKHYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHHHH-HHHHhhcCHHHHHHHHHHH
Confidence 35442 3344567888888888743
No 335
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=70.96 E-value=89 Score=29.00 Aligned_cols=119 Identities=14% Similarity=0.095 Sum_probs=81.8
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHH-----HHHHHh
Q 044131 488 YGLHGHGLEALQLFSEMLHSGIRPSGV-TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACM-----VDILGR 561 (784)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~l-----v~~l~r 561 (784)
+++.+..++|+.-|.++.+.|...=++ ............|+-..|...|+++-.+. |.+....-+ .-+|..
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt---~~P~~~rd~ARlraa~lLvD 144 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADT---SIPQIGRDLARLRAAYLLVD 144 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccC---CCcchhhHHHHHHHHHHHhc
Confidence 466778888888888888877543332 22233445677888999999999887542 222222111 235677
Q ss_pred cCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 044131 562 AGQLEKALEFIKGLAVEPG---PAVWGALLGACMIHKDTNLARVASEKLFE 609 (784)
Q Consensus 562 ~g~~~eA~~~~~~m~~~p~---~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 609 (784)
.|.+++....++.+..+.+ ...-.+|.-+-.+.|++..|+..|+++..
T Consensus 145 ~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 145 NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 8899988888887743333 33556777788899999999999998876
No 336
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=70.87 E-value=6.8 Score=24.79 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
+|..+...|.+.|+.++|++.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456666677777777777777777665
No 337
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.27 E-value=62 Score=26.90 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=45.2
Q ss_pred HHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHH
Q 044131 353 STVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVS 416 (784)
Q Consensus 353 i~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~ 416 (784)
+......|++++|..+.+....||...|-+|-. .+.|..+++..-+.+|..+| .|...+|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345567899999999999999999999988765 35677777777777777766 45544443
No 338
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=70.25 E-value=5.7 Score=24.80 Aligned_cols=26 Identities=15% Similarity=0.050 Sum_probs=13.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
..++...|+.+.|...++++++..|+
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 33444455555555555555555554
No 339
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=70.25 E-value=49 Score=29.25 Aligned_cols=24 Identities=17% Similarity=0.183 Sum_probs=11.2
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 590 ACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 590 a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
+|.+.|+++.+.+..+.+++.+|+
T Consensus 80 g~yRlkeY~~s~~yvd~ll~~e~~ 103 (149)
T KOG3364|consen 80 GHYRLKEYSKSLRYVDALLETEPN 103 (149)
T ss_pred HHHHHhhHHHHHHHHHHHHhhCCC
Confidence 444444444444444444444444
No 340
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=69.98 E-value=65 Score=27.13 Aligned_cols=87 Identities=13% Similarity=0.084 Sum_probs=55.9
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 427 AISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 427 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
..++|..|.+.+...+- ....+.-.-+..+.+.|++++|...=.....||...|-+|-. .+.|..+++...+.++..
T Consensus 21 cH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~ 97 (116)
T PF09477_consen 21 CHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLAS 97 (116)
T ss_dssp -HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 46777777777776653 333444444556778899999965555666799999987754 577888888888888877
Q ss_pred CCCCCCHHHHH
Q 044131 507 SGIRPSGVTFL 517 (784)
Q Consensus 507 ~g~~pd~~t~~ 517 (784)
+| .|....|.
T Consensus 98 ~g-~~~~q~Fa 107 (116)
T PF09477_consen 98 SG-SPELQAFA 107 (116)
T ss_dssp -S-SHHHHHHH
T ss_pred CC-CHHHHHHH
Confidence 66 45444443
No 341
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=69.77 E-value=3.7e+02 Score=35.67 Aligned_cols=62 Identities=15% Similarity=0.006 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 581 PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 581 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
..+|-.....+|..|.++.|..+.-++.+.. -+..+.-.+......|+-..|..+.+..-+.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4489999999999999999999988887766 4568999999999999999999998876653
No 342
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.59 E-value=39 Score=37.45 Aligned_cols=100 Identities=19% Similarity=0.148 Sum_probs=65.9
Q ss_pred HhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHH
Q 044131 357 SRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHE 436 (784)
Q Consensus 357 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~ 436 (784)
.+.|+++.|.++-.+ ..+..-|..|-.+..+.|++..|.+.|..... |.+|+-.+...|+-+.-..+-.
T Consensus 648 l~lgrl~iA~~la~e--~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVE--ANSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHh--hcchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 456777777776543 33566788888888888888888888877653 4456666667777665555555
Q ss_pred HHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhc
Q 044131 437 LVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLM 473 (784)
Q Consensus 437 ~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 473 (784)
...+.|. . |.-.-+|...|+++++.+++.+-
T Consensus 717 ~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 717 LAKKQGK-N-----NLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHhc
Confidence 5555552 2 22233566777777777776554
No 343
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=68.03 E-value=11 Score=40.41 Aligned_cols=84 Identities=19% Similarity=0.098 Sum_probs=62.6
Q ss_pred HHhcCCHHHHHHHHHhC-CCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 044131 559 LGRAGQLEKALEFIKGL-AVEPGPAVWGALL-GACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAAT 636 (784)
Q Consensus 559 l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll-~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 636 (784)
+...+.++.|..++.+. .+.||-..|.+.= .|..+.+++..|..-+.++++++|...-.|+.-+..+.+.+++.+|..
T Consensus 14 ~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~ 93 (476)
T KOG0376|consen 14 ALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALL 93 (476)
T ss_pred hcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHH
Confidence 34555666666666554 4677666554443 677788888888888888889998888888888888888888888888
Q ss_pred HHHHHH
Q 044131 637 VRQVVK 642 (784)
Q Consensus 637 ~~~~m~ 642 (784)
.++.-+
T Consensus 94 ~l~~~~ 99 (476)
T KOG0376|consen 94 DLEKVK 99 (476)
T ss_pred HHHHhh
Confidence 876544
No 344
>PF15161 Neuropep_like: Neuropeptide-like
Probab=67.67 E-value=1.7 Score=30.73 Aligned_cols=15 Identities=40% Similarity=1.001 Sum_probs=11.4
Q ss_pred ccccCCcccchhhhhh
Q 044131 740 NLRVCLDCHTATKFIS 755 (784)
Q Consensus 740 n~r~c~dch~~~k~~s 755 (784)
--|-|.|||.|- |+-
T Consensus 12 esRPCVDCHAFe-fmq 26 (65)
T PF15161_consen 12 ESRPCVDCHAFE-FMQ 26 (65)
T ss_pred CCCCchhhHHHH-HHH
Confidence 468999999875 554
No 345
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=67.10 E-value=54 Score=36.23 Aligned_cols=25 Identities=36% Similarity=0.534 Sum_probs=21.7
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCC
Q 044131 451 TALIDMYAKCGNIVEARELFDLMSH 475 (784)
Q Consensus 451 ~~Li~~y~k~g~~~~A~~~f~~~~~ 475 (784)
..|+.-|.+++++++|..++..|.-
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW 436 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNW 436 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCc
Confidence 4677889999999999999999973
No 346
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=65.88 E-value=30 Score=28.83 Aligned_cols=49 Identities=22% Similarity=0.186 Sum_probs=33.3
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHH
Q 044131 572 IKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVL 620 (784)
Q Consensus 572 ~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 620 (784)
+-.+-+-|++.+..+-|.||++.+|+..|.++++-+-..-.+....|-.
T Consensus 36 l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~ 84 (108)
T PF02284_consen 36 LFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPY 84 (108)
T ss_dssp HTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHH
T ss_pred HhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHH
Confidence 3345678999999999999999999999999999876543333334443
No 347
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=65.35 E-value=72 Score=28.75 Aligned_cols=77 Identities=13% Similarity=0.106 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCC---------CCCeeeHHHHHHHHHhCCC-chHHHHHHHHHHHcCCCCChhhHHhH
Q 044131 248 LTGLVSFYSKCGEVERAELLFRDIV---------RPDLISCNAMISGYTCNGK-TESSLRLFRQLLASAERVNSSTIVGL 317 (784)
Q Consensus 248 ~~~li~~y~~~g~~~~A~~~f~~~~---------~~d~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~l 317 (784)
.|.+++-....+.+.....+++.+. ..+-.+|++++.+..+..- ---+..+|..|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455554455555555555544441 2566788999998877666 45677889999988899999999999
Q ss_pred HHhhcCC
Q 044131 318 IPVFYPF 324 (784)
Q Consensus 318 l~~~~~~ 324 (784)
+++|.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 9988765
No 348
>PF13934 ELYS: Nuclear pore complex assembly
Probab=64.85 E-value=93 Score=30.62 Aligned_cols=106 Identities=20% Similarity=0.175 Sum_probs=55.2
Q ss_pred HHHHHHHH--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHH
Q 044131 481 WNTMISGY--GLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDI 558 (784)
Q Consensus 481 ~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~ 558 (784)
+...+.|| ..++++++|++++-.- .+.|+... -++.++...|..+.|..+++.+. ..-.+.+....+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~~--~Il~~L~~~~~~~lAL~y~~~~~---p~l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFPD--KILQALLRRGDPKLALRYLRAVG---PPLSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccHH--HHHHHHHHCCChhHHHHHHHhcC---CCCCCHHHHHHHHHH
Confidence 33444553 3456666666666321 12222221 35566666777777777777652 111112222333333
Q ss_pred HHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 044131 559 LGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHK 595 (784)
Q Consensus 559 l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g 595 (784)
...|.+.||..+.++.+-+-....|..++..|....
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEEC 186 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHHh
Confidence 445778888887777652222346666776666444
No 349
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.57 E-value=47 Score=33.80 Aligned_cols=46 Identities=11% Similarity=0.036 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhc
Q 044131 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLM 473 (784)
Q Consensus 428 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 473 (784)
++.++.+...-+..|+-||.++++.|+|.+.+.+++.+|.++...|
T Consensus 116 pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~ 161 (418)
T KOG4570|consen 116 PQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEV 161 (418)
T ss_pred hHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 3344444444445555555555555555555555555555544443
No 350
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=64.34 E-value=2.8e+02 Score=32.15 Aligned_cols=203 Identities=9% Similarity=-0.004 Sum_probs=100.3
Q ss_pred HHHHHHhCCCCChhhHhHHHHHhhCCCChhHHHHHhccCCCCCcchHHHHHHHHh-cCCCchhHHHHHHHHHhhCCCCCC
Q 044131 29 HAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSIPKPDLFLFNVIIRGFS-NNEMPKSSICFYTHLRKNTALTPD 107 (784)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~-~~g~~~~a~~~~~~~m~~~~~~p~ 107 (784)
|..+....-+.++.-|..||.+-.+| ++.+.+-|.--|..+..++-.+.+.|. ...+.++|.. .+.+-....-+++
T Consensus 18 ~~~~~~~~~~~~l~~Y~kLI~~ai~C--L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~-~L~k~~~l~~~~~ 94 (608)
T PF10345_consen 18 HSLATKVKSEEQLKQYYKLIATAIKC--LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAET-YLEKAILLCERHR 94 (608)
T ss_pred HHHHHhcCChhhHHHHHHHHHHHHHH--HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhccccc
Confidence 33333334455677788888877654 444333222222234445555666654 5678888888 6665433222222
Q ss_pred cc----cHHHH-HHHHhcCCCchHHHHHHHHHHHhC----CCCchhHHHHH-HHHhhcCCChHHHHHHhccCCC----C-
Q 044131 108 NF----TYSFV-LSAASACCDRSIGVLLHGHAIVSG----YGSDLFVGAAL-VDLYFKFSWVKSARKVFDKMPE----K- 172 (784)
Q Consensus 108 ~~----t~~~l-l~~~~~~~~~~~a~~~~~~~~~~g----~~~d~~~~~~l-i~~y~~~g~~~~A~~~f~~~~~----~- 172 (784)
-. ....+ ++.+.+.+ ...|....+..++.- ..+=...+.-+ +..+...++...|.+.++.+.. +
T Consensus 95 ~~d~k~~~~~ll~~i~~~~~-~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~ 173 (608)
T PF10345_consen 95 LTDLKFRCQFLLARIYFKTN-PKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG 173 (608)
T ss_pred hHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC
Confidence 11 11222 33333433 333777776665432 11222233333 3333333788888888776642 1
Q ss_pred C--cccHHHHHHHH--HcCCCchHHHHHHHHHHHcCCC---------CCChhhHHhHHHHHhc--ccchhHHHHHHHHH
Q 044131 173 D--TVLWNSMISGL--MKNCCFQDSIWVFGDMVRNGGT---------WLDSTSVAAVLPAVAE--VQELRLGMEIQCLG 236 (784)
Q Consensus 173 ~--~~~~~~li~~~--~~~g~~~~A~~l~~~m~~~~g~---------~pd~~t~~~ll~a~~~--~~~~~~a~~~~~~~ 236 (784)
| +...-.++.+. .+.+.++++++..+++... .. .|-..+|..+++.|.. .|+++.+++....+
T Consensus 174 d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~-~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 174 DPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQ-ARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH-HhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2 22222333332 3456667777777776332 11 2233466666666543 35555555544443
No 351
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=64.19 E-value=9.1 Score=23.81 Aligned_cols=27 Identities=26% Similarity=0.121 Sum_probs=23.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 617 YHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 617 ~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.+..++.+|...|++++|.+.++.+.+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 456789999999999999999988765
No 352
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=64.18 E-value=49 Score=27.32 Aligned_cols=62 Identities=16% Similarity=0.263 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHH
Q 044131 494 GLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVD 557 (784)
Q Consensus 494 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 557 (784)
.-++.+-++.+....+-|++....+.|.||.+.+++..|..+|+....+.| .+...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 335555566666677889999999999999999999999999998764433 24456666554
No 353
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=64.15 E-value=2e+02 Score=30.59 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=63.3
Q ss_pred CHHHHHHH---HHHHHccCCHHHHHHHHHHhHHhcCCCCC--cchHHHHHHHHH-hcCCHHHHHHHHHhCCC--CCC---
Q 044131 512 SGVTFLSV---LYACSHAGLVREGDEIFQSMIHDHGFKPL--AEHYACMVDILG-RAGQLEKALEFIKGLAV--EPG--- 580 (784)
Q Consensus 512 d~~t~~~l---l~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~-r~g~~~eA~~~~~~m~~--~p~--- 580 (784)
|..-|.++ +..+.+.|-+..|.++.+-+. .+.|+ +...-.+||.|+ |+++++--+++++.... ..+
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLl---sLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~ 175 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLL---SLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLS 175 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH---hcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhh
Confidence 33444443 456788889999999988876 56665 444555677775 78888888888776432 111
Q ss_pred ---HHHHHHHHHHHHhcCC--------------HHHHHHHHHHHhcCCCC
Q 044131 581 ---PAVWGALLGACMIHKD--------------TNLARVASEKLFELDPE 613 (784)
Q Consensus 581 ---~~~~~~ll~a~~~~g~--------------~~~a~~~~~~~~~l~p~ 613 (784)
...|+.-|.-+...++ .+.|..+.++++..-|.
T Consensus 176 ~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 176 LLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred hCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 1234444444443333 37888888888887765
No 354
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=63.81 E-value=2.8e+02 Score=32.08 Aligned_cols=57 Identities=21% Similarity=0.308 Sum_probs=31.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCC---CCCc-chH-----HHHHHHHHhcCChHHHHHHHHHHH
Q 044131 586 ALLGACMIHKDTNLARVASEKLFELD---PENV-GYH-----VLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 586 ~ll~a~~~~g~~~~a~~~~~~~~~l~---p~~~-~~~-----~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
++++.-.-.|++.+........+.+- |+.. ..+ ..+.+.|...|+.++|...+....
T Consensus 539 ~lm~~~lf~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 539 NLMGHRLFEGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 34443333677766555544444322 2222 223 245556777888888888876654
No 355
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.16 E-value=45 Score=24.12 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcC
Q 044131 618 HVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAG 692 (784)
Q Consensus 618 ~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g 692 (784)
...|+-.+.+.|++++|.+..+.+.+ .+|...+.......+.++|++.|
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~--------------------------~eP~N~Qa~~L~~~i~~~i~kdg 52 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLE--------------------------IEPDNRQAQSLKELIEDKIQKDG 52 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--------------------------HTTS-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------hCCCcHHHHHHHHHHHHHHhccC
Confidence 45677788999999999999988775 23444444444555667777766
No 356
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=63.07 E-value=58 Score=27.21 Aligned_cols=60 Identities=15% Similarity=0.224 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHH
Q 044131 496 EALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVD 557 (784)
Q Consensus 496 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 557 (784)
+..+-++.+....+-|++....+.|.||.+.+++..|..+|+.+..+.+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4445555666667889999999999999999999999999998876543 44447777664
No 357
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=63.00 E-value=1.7e+02 Score=29.43 Aligned_cols=140 Identities=15% Similarity=0.166 Sum_probs=68.8
Q ss_pred HHhCCChhHHHHH----HHHHHhCCCCCCHHHHHHHHHHHhhhCchH-HHHHHHHHHH---HcCC--CCchhhHhHHHHH
Q 044131 387 YTQNGLTEEAISL----FQEMQASKVAPNPVTVSSILSACAQLGAIS-LGKWVHELVK---SRNF--ESNIYVSTALIDM 456 (784)
Q Consensus 387 ~~~~g~~~~A~~l----~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~-~a~~i~~~~~---~~g~--~~~~~~~~~Li~~ 456 (784)
+.++|+...|-++ .+-..+.+.++|......++..+...+.-+ .-..+...++ +.+- .-++.....+...
T Consensus 20 ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~ 99 (260)
T PF04190_consen 20 LLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEK 99 (260)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHH
T ss_pred HHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHH
Confidence 3444554433333 223333456666665555555554443221 1222223332 2222 2367788889999
Q ss_pred HHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCCHHHHHHH
Q 044131 457 YAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFL-SVLYACSHAGLVREGDEI 535 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~-~ll~a~~~~g~~~~a~~~ 535 (784)
|.+.|++.+|+.-|-.-.+++...+..++.-....|...++ ..|. ..+--|...|++..|...
T Consensus 100 ~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~----------------dlfi~RaVL~yL~l~n~~~A~~~ 163 (260)
T PF04190_consen 100 LWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA----------------DLFIARAVLQYLCLGNLRDANEL 163 (260)
T ss_dssp HHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H----------------HHHHHHHHHHHHHTTBHHHHHHH
T ss_pred HHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch----------------hHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999999999888765544444443333333333333332 2222 122235567888888888
Q ss_pred HHHhHHh
Q 044131 536 FQSMIHD 542 (784)
Q Consensus 536 ~~~m~~~ 542 (784)
++...+.
T Consensus 164 ~~~f~~~ 170 (260)
T PF04190_consen 164 FDTFTSK 170 (260)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8777654
No 358
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.71 E-value=1e+02 Score=33.20 Aligned_cols=120 Identities=13% Similarity=-0.010 Sum_probs=62.4
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHc--cCCHHHHHHHHHHhHHhcCC-CCCcchHHHHHHHHHhcC
Q 044131 489 GLHGHGLEALQLFSEMLHSGIRPSGV--TFLSVLYACSH--AGLVREGDEIFQSMIHDHGF-KPLAEHYACMVDILGRAG 563 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~a~~~--~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~lv~~l~r~g 563 (784)
...+++..|.++|+++... ++++.. .+..+..+|.. .-++++|.+.++........ .-...++..++...-...
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 220 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKELVEVLKALE 220 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHHHHHHHHHH
Confidence 3668888888888888886 566554 23333344433 55677888888877643111 011223333333332222
Q ss_pred CHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh--cCCHHHHHHHHHHHhc
Q 044131 564 QLEKALEFIKGLAVEPG-PAVWGALLGACMI--HKDTNLARVASEKLFE 609 (784)
Q Consensus 564 ~~~eA~~~~~~m~~~p~-~~~~~~ll~a~~~--~g~~~~a~~~~~~~~~ 609 (784)
.+.........-+-+|. ..+..-+.+|-++ .|+++.|...+-+++|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lE 269 (379)
T PF09670_consen 221 SILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALE 269 (379)
T ss_pred hhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 22222222221111121 2244445556653 6888888776666665
No 359
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=62.05 E-value=14 Score=21.90 Aligned_cols=21 Identities=29% Similarity=0.335 Sum_probs=13.1
Q ss_pred HHHHHHHHhcCChHHHHHHHh
Q 044131 249 TGLVSFYSKCGEVERAELLFR 269 (784)
Q Consensus 249 ~~li~~y~~~g~~~~A~~~f~ 269 (784)
..|...+...|++++|+.+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445566666667776666654
No 360
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=61.65 E-value=2.3e+02 Score=30.26 Aligned_cols=64 Identities=17% Similarity=0.103 Sum_probs=49.7
Q ss_pred CHHHHHHHH---HHHHhcCCHHHHHHHHHHHhcCCCC-CcchHHHHHHHHHh-cCChHHHHHHHHHHHh
Q 044131 580 GPAVWGALL---GACMIHKDTNLARVASEKLFELDPE-NVGYHVLLSNIYSA-ERDYLQAATVRQVVKK 643 (784)
Q Consensus 580 ~~~~~~~ll---~a~~~~g~~~~a~~~~~~~~~l~p~-~~~~~~~l~~~y~~-~g~~~~a~~~~~~m~~ 643 (784)
|...|.+|. ....+.|-+.-|.+..+-++.++|. ||-.-.++.+.|+- +++++--.++.+....
T Consensus 99 NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 99 NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 455565554 4677899999999999999999998 88877788888775 6777777777766544
No 361
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=61.48 E-value=2.3e+02 Score=30.24 Aligned_cols=161 Identities=18% Similarity=0.241 Sum_probs=92.7
Q ss_pred hhHhHHHHHHHhcCCHHHHHHHHhhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044131 448 YVSTALIDMYAKCGNIVEARELFDLMSH------KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLY 521 (784)
Q Consensus 448 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 521 (784)
....-+.+.|..||+++.|.+.|.+..+ .-+..|-.+|..-.-.|++.....+-.+..+. |+.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st---~~~-------- 219 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAEST---PDA-------- 219 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhC---chh--------
Confidence 3456678899999999999999998652 12335666666666667777777666666542 211
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC---------CCCC-HHHHHHHHHHH
Q 044131 522 ACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA---------VEPG-PAVWGALLGAC 591 (784)
Q Consensus 522 a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~---------~~p~-~~~~~~ll~a~ 591 (784)
+..... .+.+....+..++.+..+ +++.|...+-..+ +.|. ..+|.. +.|.
T Consensus 220 --------------~~~~~q--~v~~kl~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYgg-LcAL 280 (466)
T KOG0686|consen 220 --------------NENLAQ--EVPAKLKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGG-LCAL 280 (466)
T ss_pred --------------hhhHHH--hcCcchHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHh-hHhh
Confidence 111111 334445666666666555 5555554443221 3454 444444 3443
Q ss_pred HhcCCHHH-----HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 592 MIHKDTNL-----ARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 592 ~~~g~~~~-----a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..-++-+. ....|+..++++|. ....|...|. +++....++.+.++.
T Consensus 281 Atfdr~~Lk~~vi~n~~Fk~flel~Pq---lr~il~~fy~--sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 281 ATFDRQDLKLNVIKNESFKLFLELEPQ---LREILFKFYS--SKYASCLELLREIKP 332 (466)
T ss_pred ccCCHHHHHHHHHcchhhhhHHhcChH---HHHHHHHHhh--hhHHHHHHHHHHhcc
Confidence 33333322 23457788888886 4555555554 567777777666653
No 362
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.88 E-value=1.9e+02 Score=29.16 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=22.3
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCCh
Q 044131 344 SNSSVLTALSTVYSRLNEMEAARKLFDESSEKSL 377 (784)
Q Consensus 344 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~ 377 (784)
.|+.....+...|.+.|++.+|+..|-.-.+++.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~ 121 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSA 121 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhH
Confidence 4677888888888888888888887754443333
No 363
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=60.86 E-value=54 Score=35.23 Aligned_cols=118 Identities=17% Similarity=0.166 Sum_probs=65.2
Q ss_pred CCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHH
Q 044131 492 GHGLEAL-QLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALE 570 (784)
Q Consensus 492 g~~~~A~-~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~ 570 (784)
|+...|- ++|.-+....-.|+.+...+.+ .++.|.++.+.+......+ -+.....+..|++..+-..|++++|..
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 4444333 3444444433455555444433 4566777777766665532 233445566677777777777777777
Q ss_pred HHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 571 FIKGLA--VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 571 ~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
+-+.|- --.++.+...-.......|-++++...+++++.++|.
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 766652 1112333333334445556677777777777776653
No 364
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=60.83 E-value=49 Score=32.20 Aligned_cols=64 Identities=14% Similarity=0.031 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhcCCHHHH-------HHHHHHHhcCC--C----CCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 581 PAVWGALLGACMIHKDTNLA-------RVASEKLFELD--P----ENVGYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 581 ~~~~~~ll~a~~~~g~~~~a-------~~~~~~~~~l~--p----~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
+..+.-+.+.|+..|+.+.- ...++++++.+ | +......+++.++.+.|+.++|.+.+..+-..
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 34677778889988885554 44455555433 2 22456778999999999999999999887653
No 365
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=60.30 E-value=2e+02 Score=29.24 Aligned_cols=52 Identities=10% Similarity=0.084 Sum_probs=29.0
Q ss_pred CCchhHHHHHHHHHHhcCChHHHHHHHhcC-----CCCCeeeHHHHHHHHHhCCCch
Q 044131 242 HDHVYVLTGLVSFYSKCGEVERAELLFRDI-----VRPDLISCNAMISGYTCNGKTE 293 (784)
Q Consensus 242 ~~~~~~~~~li~~y~~~g~~~~A~~~f~~~-----~~~d~~~~~~li~~~~~~g~~~ 293 (784)
.++..+....++.+++.+++..-.++++.. +..|...|..+|....+.|+..
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 444555555555555556655555555443 2345556666666666666643
No 366
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.22 E-value=2.6e+02 Score=31.84 Aligned_cols=51 Identities=20% Similarity=0.130 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHhCCCc
Q 044131 595 KDTNLARVASEKLFELDPENVGYHVLLSNIYSAE-RDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 595 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~~~~ 647 (784)
.+.+.|...++++-+.+ ++.+...++.+|.-. ++++.+.-.+..+++.|..
T Consensus 378 r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYE 429 (552)
T ss_pred CCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhh
Confidence 35666666666666665 233344444444333 6666666666666655543
No 367
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=59.85 E-value=2e+02 Score=29.16 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=23.2
Q ss_pred HHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044131 455 DMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEM 504 (784)
Q Consensus 455 ~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (784)
..|..||.+.+|.++-+.... -+...|-.++..++..|+--+|.+-++++
T Consensus 287 ~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 287 RAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 344445555555554444432 23334444555555555544444444444
No 368
>PRK13342 recombination factor protein RarA; Reviewed
Probab=58.73 E-value=2.4e+02 Score=30.75 Aligned_cols=47 Identities=11% Similarity=0.168 Sum_probs=33.3
Q ss_pred HHHHHHHHHHh---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhh
Q 044131 379 SWNAMIAGYTQ---NGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQL 425 (784)
Q Consensus 379 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~ 425 (784)
.+..+++++.+ .++.+.|+..+..|...|..|....-..+..++-..
T Consensus 229 ~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edi 278 (413)
T PRK13342 229 EHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDI 278 (413)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhh
Confidence 45555666555 578999999999999999888866555555554443
No 369
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=57.26 E-value=39 Score=32.49 Aligned_cols=63 Identities=14% Similarity=0.135 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 553 ACMVDILGRAGQLEKALEFIKG-LAVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 553 ~~lv~~l~r~g~~~eA~~~~~~-m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
+.-+..+.+.+.+++|+...+. ..-+| |...-..|...++..|++++|..-.+-+-+++|++.
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 3445566677777777776644 33445 444566667777777777777777777777777654
No 370
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=57.26 E-value=1.4e+02 Score=29.35 Aligned_cols=55 Identities=13% Similarity=0.012 Sum_probs=44.7
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 589 GACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..+...|++-++++....++..+|.|..+|..-+...+..=+-++|..-+....+
T Consensus 238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 3445678999999999999999999999999998888877777777777666554
No 371
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=56.39 E-value=1.5e+02 Score=26.67 Aligned_cols=76 Identities=11% Similarity=0.211 Sum_probs=46.6
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcC---------CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044131 451 TALIDMYAKCGNIVEARELFDLMS---------HKSEVTWNTMISGYGLHGH-GLEALQLFSEMLHSGIRPSGVTFLSVL 520 (784)
Q Consensus 451 ~~Li~~y~k~g~~~~A~~~f~~~~---------~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~ll 520 (784)
|.++.-.+.-+++.....+++.+. ..+..+|.+++.+.++..- ---+..+|.-|.+.+.+++..-|..++
T Consensus 43 N~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li 122 (145)
T PF13762_consen 43 NCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLI 122 (145)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 444444444444444444444332 2455677788877765554 334667778887777788888888888
Q ss_pred HHHHcc
Q 044131 521 YACSHA 526 (784)
Q Consensus 521 ~a~~~~ 526 (784)
.+|.+.
T Consensus 123 ~~~l~g 128 (145)
T PF13762_consen 123 KAALRG 128 (145)
T ss_pred HHHHcC
Confidence 877665
No 372
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=56.03 E-value=81 Score=30.13 Aligned_cols=13 Identities=31% Similarity=0.370 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHCC
Q 044131 496 EALQLFSEMLHSG 508 (784)
Q Consensus 496 ~A~~~~~~m~~~g 508 (784)
+|.+.|-++...+
T Consensus 124 ~A~~~fL~~E~~~ 136 (203)
T PF11207_consen 124 EALRRFLQLEGTP 136 (203)
T ss_pred HHHHHHHHHcCCC
Confidence 4444444444433
No 373
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.57 E-value=1.5e+02 Score=29.53 Aligned_cols=184 Identities=15% Similarity=0.081 Sum_probs=112.0
Q ss_pred hcCCHHHHHHHHhhcCC----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHHcc
Q 044131 459 KCGNIVEARELFDLMSH----K---SEVTWNTMISGYGLHGHGLEALQLFSEMLH---SGI--RPSGVTFLSVLYACSHA 526 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~pd~~t~~~ll~a~~~~ 526 (784)
+...+++|+.-|++..+ + .-.+...||..+.+.|++++.++.|.+|.. ..+ .-+..+.++++.--+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34567788887776652 2 233556678888888999998888888864 112 12344567777766666
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC--C-----CCC-------HHHHHHHH
Q 044131 527 GLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALEFIKGLA--V-----EPG-------PAVWGALL 588 (784)
Q Consensus 527 g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~-----~p~-------~~~~~~ll 588 (784)
.+.+--.++++.-.+...-..+ -.+-.-+..+|...|.+..-.++++++. . +.| ..+|..-+
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEI 198 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEI 198 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHh
Confidence 6666655555544322111111 2344556777777777777777766551 0 111 22555556
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCcchHH------HHHHHHHhcCChHHHHHH-HHHHH
Q 044131 589 GACMIHKDTNLARVASEKLFELDPENVGYHV------LLSNIYSAERDYLQAATV-RQVVK 642 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~------~l~~~y~~~g~~~~a~~~-~~~m~ 642 (784)
..|..++|-..-+.++++++.+...-|.+.. +=+.++.+.|+|++|..- |+..+
T Consensus 199 QmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 199 QMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 7788888888888999998876543332222 223467788899888643 44443
No 374
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=55.35 E-value=1.9e+02 Score=27.39 Aligned_cols=97 Identities=13% Similarity=0.096 Sum_probs=65.5
Q ss_pred HHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCC---
Q 044131 367 KLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNF--- 443 (784)
Q Consensus 367 ~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~--- 443 (784)
.+.++-+++..+.|.....+-++.-+.+++-+.|- ...=.+++-.|.+..++.+|+.+++.+-+..+
T Consensus 97 ~Ltkd~Kdk~~vPFceFAetV~k~~q~~e~dK~~L----------GRiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft 166 (233)
T PF14669_consen 97 ALTKDSKDKPGVPFCEFAETVCKDPQNDEVDKTLL----------GRIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFT 166 (233)
T ss_pred HHHhcccccCCCCHHHHHHHHhcCCccchhhhhhh----------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 34444455566677777777777666666544331 12234567778888899999999888765432
Q ss_pred -----------CCchhhHhHHHHHHHhcCCHHHHHHHHhhc
Q 044131 444 -----------ESNIYVSTALIDMYAKCGNIVEARELFDLM 473 (784)
Q Consensus 444 -----------~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 473 (784)
.+--.+.|.-...+.++|++|.|..++++-
T Consensus 167 ~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLres 207 (233)
T PF14669_consen 167 SLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRES 207 (233)
T ss_pred hccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhcc
Confidence 233456777888899999999999988754
No 375
>PHA02875 ankyrin repeat protein; Provisional
Probab=55.04 E-value=3.1e+02 Score=29.74 Aligned_cols=148 Identities=10% Similarity=-0.018 Sum_probs=62.5
Q ss_pred HHHhhcCCChHHHHHHhccCCCC----CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhh--HHhHHHHHhcc
Q 044131 150 VDLYFKFSWVKSARKVFDKMPEK----DTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTS--VAAVLPAVAEV 223 (784)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t--~~~ll~a~~~~ 223 (784)
+...++.|+.+....+++.-... +..-++.|. ..+..|+. ++++.+.+. |..|+... -.+.+...+..
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~-~A~~~~~~----~iv~~Ll~~-gad~~~~~~~g~tpLh~A~~~ 145 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLH-LATILKKL----DIMKLLIAR-GADPDIPNTDKFSPLHLAVMM 145 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHH-HHHHhCCH----HHHHHHHhC-CCCCCCCCCCCCCHHHHHHHc
Confidence 34445566666666666543321 111122222 23334443 333334444 55554332 12334444455
Q ss_pred cchhHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHhcCCCCCeee---HHHHHHHHHhCCCchHHHHH
Q 044131 224 QELRLGMEIQCLGLKLGFHDHVY--VLTGLVSFYSKCGEVERAELLFRDIVRPDLIS---CNAMISGYTCNGKTESSLRL 298 (784)
Q Consensus 224 ~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~---~~~li~~~~~~g~~~~A~~l 298 (784)
|+.+..+.+ ++.|..++.. ...+-+...+..|..+-+..+++.-..++... .++.+...+..|+. ++
T Consensus 146 ~~~~~v~~L----l~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~----~i 217 (413)
T PHA02875 146 GDIKGIELL----IDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKI----DI 217 (413)
T ss_pred CCHHHHHHH----HhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCH----HH
Confidence 555443333 3444433221 12223334445566666665555544333221 12333323344443 34
Q ss_pred HHHHHHcCCCCCh
Q 044131 299 FRQLLASAERVNS 311 (784)
Q Consensus 299 ~~~m~~~g~~p~~ 311 (784)
.+.+.+.|..++.
T Consensus 218 v~~Ll~~gad~n~ 230 (413)
T PHA02875 218 VRLFIKRGADCNI 230 (413)
T ss_pred HHHHHHCCcCcch
Confidence 4444555655543
No 376
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=54.80 E-value=32 Score=28.76 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=50.5
Q ss_pred HhhhhhHHHHHHHHHhhccCCCCCeEEEEeccccCCcccchhhhhhhhcCceEEEecCC
Q 044131 710 ELMMKVHSEKLAIAFGLIATEPGTEIRIIKNLRVCLDCHTATKFISKVTGRVIVVRDAN 768 (784)
Q Consensus 710 ~~~~~~hse~la~~~~l~~~~~~~~~~~~kn~r~c~dch~~~k~~s~~~~r~i~~rd~~ 768 (784)
+..|.-|.|.-++--=-.+.-+|..+-|.--++-|..|-.+|.-.|.-+|-.|+-++.+
T Consensus 44 ~~slaTHTE~ri~~~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~~~g~~I~Y~w~~ 102 (118)
T PF14427_consen 44 ESSLATHTEARITRDLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASEKSGATIQYTWPN 102 (118)
T ss_pred hhhhhhhhHhHHHhhcCccccCCceEEEeeecCCCchhHHHHHHhhhccCcEEEEecCC
Confidence 45688899988886544555569999999999999999999999999999999998854
No 377
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=54.76 E-value=25 Score=28.79 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=21.9
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 603 ASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 603 ~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
.+++.++.+|+|...-..++..|...|++++|.+.+-.+.
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555566666666666666666666666665554443
No 378
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=54.36 E-value=24 Score=23.11 Aligned_cols=32 Identities=19% Similarity=-0.094 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHH--HHHHhcCCCCC
Q 044131 583 VWGALLGACMIHKDTNLARVA--SEKLFELDPEN 614 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~--~~~~~~l~p~~ 614 (784)
-|-++...+...|+.+.|+.+ ++-+..++|.|
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 356677777888888888888 44776666653
No 379
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=53.02 E-value=1.2e+02 Score=29.00 Aligned_cols=60 Identities=18% Similarity=0.088 Sum_probs=33.2
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc
Q 044131 557 DILGRAGQLEKALEFIKGL-AVEPGPA-VWGALLGACMIHKDTNLARVASEKLFELDPENVG 616 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m-~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 616 (784)
.++.+.+.++.|++-..+. .+.|... ...--.-+|-+...++.|..-|+++++++|....
T Consensus 142 aa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 142 AALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHH
Confidence 3444555555555444332 2333211 1111223556667788888888999998887543
No 380
>PHA02875 ankyrin repeat protein; Provisional
Probab=52.70 E-value=3.3e+02 Score=29.46 Aligned_cols=114 Identities=10% Similarity=0.012 Sum_probs=47.8
Q ss_pred HHHHHhcCChHHHHHHHhcCCCC----CeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhh--HHhHHHhhcCCC
Q 044131 252 VSFYSKCGEVERAELLFRDIVRP----DLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSST--IVGLIPVFYPFG 325 (784)
Q Consensus 252 i~~y~~~g~~~~A~~~f~~~~~~----d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t--~~~ll~~~~~~~ 325 (784)
+...++.|+.+.+..+++.-... +..-++.+. ..+..|+. ++++.+.+.|..|+... -.+.+...+..|
T Consensus 72 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~-~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~ 146 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLH-LATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMG 146 (413)
T ss_pred HHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHH-HHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcC
Confidence 34445566666666665543221 111122222 22334443 34455555565554322 122333333445
Q ss_pred ChhHHHHHHHHHHHhCCCcchH--HHHHHHHHHHhcCCHHHHHHHHhhcCC
Q 044131 326 HLHLTNCIHSFCLKSGIVSNSS--VLTALSTVYSRLNEMEAARKLFDESSE 374 (784)
Q Consensus 326 ~~~~a~~i~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~~~~~ 374 (784)
+.+..+. +++.|..++.. ...+.+...+..|+.+-+.-+++.-..
T Consensus 147 ~~~~v~~----Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~ 193 (413)
T PHA02875 147 DIKGIEL----LIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN 193 (413)
T ss_pred CHHHHHH----HHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence 5443333 33344332211 112233344455666666655554433
No 381
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=52.28 E-value=25 Score=27.74 Aligned_cols=47 Identities=9% Similarity=0.107 Sum_probs=26.3
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHH
Q 044131 525 HAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEF 571 (784)
Q Consensus 525 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~ 571 (784)
+....++|+..|.+.+++..-.|+ -.+..+++.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666544322222 33556666666666666666555
No 382
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=51.38 E-value=22 Score=21.75 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 595 KDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 595 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
|+.+.+..+++++++..|.++..+...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 56778888888888888877777666543
No 383
>PF13934 ELYS: Nuclear pore complex assembly
Probab=51.09 E-value=1.3e+02 Score=29.65 Aligned_cols=113 Identities=16% Similarity=0.101 Sum_probs=59.7
Q ss_pred CCHHHHHHHHhhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh
Q 044131 461 GNIVEARELFDLMSH-KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSM 539 (784)
Q Consensus 461 g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m 539 (784)
+++++|.+.+-.-.- ++-. .-++.++...|+.+.|+.+++.+.-..-.++ ....++.+ ...+.+.||..+-+..
T Consensus 92 ~~~~~A~~~L~~ps~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~--~~~~~~~~-La~~~v~EAf~~~R~~ 166 (226)
T PF13934_consen 92 GDFEEALELLSHPSLIPWFP--DKILQALLRRGDPKLALRYLRAVGPPLSSPE--ALTLYFVA-LANGLVTEAFSFQRSY 166 (226)
T ss_pred HhHHHHHHHhCCCCCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCCCCCHH--HHHHHHHH-HHcCCHHHHHHHHHhC
Confidence 556666666543321 1111 1366777777888888888776543222222 22222333 4457888888877665
Q ss_pred HHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHH
Q 044131 540 IHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPA 582 (784)
Q Consensus 540 ~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~ 582 (784)
.+. -....+..++..+.....-....+.+-.+|+.+...
T Consensus 167 ~~~----~~~~l~e~l~~~~~~~~~~~~~~~~Ll~LPl~~~EE 205 (226)
T PF13934_consen 167 PDE----LRRRLFEQLLEHCLEECARSGRLDELLSLPLDEEEE 205 (226)
T ss_pred chh----hhHHHHHHHHHHHHHHhhhhhHHHHHHhCCCChHHH
Confidence 421 113456666666654443233344444567666544
No 384
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=50.72 E-value=69 Score=35.47 Aligned_cols=98 Identities=17% Similarity=0.108 Sum_probs=72.1
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHH
Q 044131 524 SHAGLVREGDEIFQSMIHDHGFKPL--AEHYACMVDILGRAGQLEKALEFIKGL-A-VEPGPAVWGALLGACMIHKDTNL 599 (784)
Q Consensus 524 ~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~r~g~~~eA~~~~~~m-~-~~p~~~~~~~ll~a~~~~g~~~~ 599 (784)
...|+...|...+.... ...|. -.....|..++.+.|...+|-.++.+. . ....+.++.++..++....|++.
T Consensus 618 r~~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~ 694 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISG 694 (886)
T ss_pred eecCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHH
Confidence 34677888888877665 44453 234556777788888888888887654 2 23345678888899999999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHH
Q 044131 600 ARVASEKLFELDPENVGYHVLLSNI 624 (784)
Q Consensus 600 a~~~~~~~~~l~p~~~~~~~~l~~~ 624 (784)
|.+.++.+++++|+++..-..|-.+
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHHHHHH
Confidence 9999999999999988776655443
No 385
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=50.38 E-value=2.5e+02 Score=27.28 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh-HHHHHHHH--HHhCCChhHHHHHHHHHHh
Q 044131 346 SSVLTALSTVYSRLNEMEAARKLFDESSEKSLA-SWNAMIAG--YTQNGLTEEAISLFQEMQA 405 (784)
Q Consensus 346 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~--~~~~g~~~~A~~l~~~m~~ 405 (784)
+.++|-|.--+...|+++.|.+.|+...+-|+. -|..+=.| +---|++.-|.+-|.+.-+
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 457777777777788888888888877665543 22222222 2234677777665555544
No 386
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=49.41 E-value=32 Score=34.69 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=32.0
Q ss_pred HhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHH
Q 044131 560 GRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVL 620 (784)
Q Consensus 560 ~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 620 (784)
-+.|+.++|..+|+.. .+.|+ +.+..-+..-.-.++++-+|.+.|-+++.+.|.++.+.++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvn 189 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVN 189 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhh
Confidence 3556666666666543 34443 2233333333344556666666666666666665554443
No 387
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=49.35 E-value=3.7e+02 Score=29.04 Aligned_cols=365 Identities=9% Similarity=-0.044 Sum_probs=0.0
Q ss_pred hHHHHHhhCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCC--
Q 044131 45 TKLAHRLSDFKATCYARALFFSIPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACC-- 122 (784)
Q Consensus 45 ~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~-- 122 (784)
|-++..|...|+..+|.+...++ ..+-+.....-++++..+.-..|.. +.-.+...+...+-..-+.+.+.+.+.+
T Consensus 218 n~~l~eyv~~getrea~rciR~L-~vsffhhe~vkralv~ame~~~ae~-l~l~llke~~e~glissSq~~kGfsr~~~s 295 (645)
T KOG0403|consen 218 NGNLIEYVEIGETREACRCIREL-GVSFFHHEGVKRALVDAMEDALAEG-LTLKLLKEGREEGLISSSQMGKGFSRKGGS 295 (645)
T ss_pred HHHHHHHHHcccHHHHHHHHHHh-CCCchhhHHHHHHHHHHHhhhhccc-ceeccchhhhhhcchhhhccccCchhhccc
Q ss_pred ------CchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHH
Q 044131 123 ------DRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWV 196 (784)
Q Consensus 123 ------~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 196 (784)
+...++..++.+.-.....+----+++-..-..+|+.+. .+.|.+ .-..+|.-|...|+..+.++.
T Consensus 296 lddl~ldiP~a~~~~esiv~Ka~s~gwl~e~s~k~~s~~~g~~e~-~r~Fkk-------~~~~IIqEYFlsgDt~Evi~~ 367 (645)
T KOG0403|consen 296 LDDLVLDIPSARYDFESIVPKAPSGGWLDENSFKETSVLPGDSEN-LRAFKK-------DLTPIIQEYFLSGDTPEVIRS 367 (645)
T ss_pred cccccccCcchhhhhhhhcccCCCCCccchhhhcccccCCCcchH-HHHHHH-------hhHHHHHHHHhcCChHHHHHH
Q ss_pred HHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---
Q 044131 197 FGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR--- 273 (784)
Q Consensus 197 ~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--- 273 (784)
++.+-.. ..+|-..-+..-|..=.+...-+.|-.++..+ +...=..++..+-|..+.+
T Consensus 368 L~DLn~~-E~~~~f~k~lITLAldrK~~ekEMasvllS~L------------------~~e~fsteDv~~~F~mLLesae 428 (645)
T KOG0403|consen 368 LRDLNLP-EYNPGFLKLLITLALDRKNSEKEMASVLLSDL------------------HGEVFSTEDVEKGFDMLLESAE 428 (645)
T ss_pred HHHcCCc-cccchHHHHHHHHHhccchhHHHHHHHHHHHh------------------hcccCCHHHHHHHHHHHHhcch
Q ss_pred ---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhC-----CCcc
Q 044131 274 ---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSG-----IVSN 345 (784)
Q Consensus 274 ---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g-----~~~~ 345 (784)
-|...-...+..|...--.++.+.=+.-=.-.|-.|...+-...++.....=....+-+-....--.| ++.-
T Consensus 429 dtALD~p~a~~elalFlARAViDdVLap~~leei~~~lp~~s~g~et~~~ArsLlsar~aGeRllr~WGgGG~g~sVed~ 508 (645)
T KOG0403|consen 429 DTALDIPRASQELALFLARAVIDDVLAPTNLEEISGTLPPVSQGRETLDKARSLLSARHAGERLLRVWGGGGGGWSVEDA 508 (645)
T ss_pred hhhccccccHHHHHHHHHHHHhhcccccCcHHHHcCCCCCchhhHHHHHHHHHHHHHhhcccchhheecCCCCcchHHHH
Q ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044131 346 SSVLTALSTVYSRLNEMEAARKLFDESSEK---SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSAC 422 (784)
Q Consensus 346 ~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 422 (784)
..-...|+.-|...|++.+|.+...++.-| ..+.+-+++.+.-+.|+.+..+.++++.-..|. +|.+.+-.++
T Consensus 509 kdkI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf 584 (645)
T KOG0403|consen 509 KDKIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhh
Q ss_pred hhhC--------chHHHHHHHHHHHHcC
Q 044131 423 AQLG--------AISLGKWVHELVKSRN 442 (784)
Q Consensus 423 ~~~~--------~~~~a~~i~~~~~~~g 442 (784)
.+.. +...|.+.|+...+.+
T Consensus 585 ~RV~dsl~DlsLDvPna~ekf~~~Ve~~ 612 (645)
T KOG0403|consen 585 ERVYDSLPDLSLDVPNAYEKFERYVEEC 612 (645)
T ss_pred hhhhccCcccccCCCcHHHHHHHHHHHH
No 388
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.28 E-value=26 Score=33.93 Aligned_cols=58 Identities=29% Similarity=0.359 Sum_probs=45.4
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 558 ILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
++...|+.+.|.+++++. ...| ....|--+...--+.|+++.|.+++++.++++|++.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 455677888888888776 3444 455888888888889999999999999999998764
No 389
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=49.01 E-value=1.6e+02 Score=30.16 Aligned_cols=119 Identities=17% Similarity=0.135 Sum_probs=56.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHH
Q 044131 484 MISGYGLHGHGLEALQLFSEMLHSGIRPSGV---TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILG 560 (784)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~---t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~ 560 (784)
+..+-.+.|+..+|.+.|+.+.+. .|=.. ....|+.+|....-+.+...++.+.- +.. .|...+ -|.-.++.
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke--~pl~t~lniheNLiEalLE~QAYADvqavLakYD-dis-lPkSA~-icYTaALL 355 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKE--FPLLTMLNIHENLLEALLELQAYADVQAVLAKYD-DIS-LPKSAA-ICYTAALL 355 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ccc-CcchHH-HHHHHHHH
Confidence 334445668888888888776653 23111 12345666655544444444433321 101 122111 11111111
Q ss_pred hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 561 RAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 561 r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
++..+-++ +.||..+-..|-.| --.|.++..++.+.+|.-|.+..-+
T Consensus 356 ------K~RAVa~k--Fspd~asrRGLS~A------E~~AvEAihRAvEFNPHVPkYLLE~ 402 (556)
T KOG3807|consen 356 ------KTRAVSEK--FSPETASRRGLSTA------EINAVEAIHRAVEFNPHVPKYLLEM 402 (556)
T ss_pred ------HHHHHHhh--cCchhhhhccccHH------HHHHHHHHHHHhhcCCCCcHHHHHH
Confidence 11222222 24555444333332 1236777888899999987665443
No 390
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=48.39 E-value=1.2e+02 Score=25.78 Aligned_cols=27 Identities=19% Similarity=0.519 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHh
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQA 405 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 405 (784)
-|..|+.-|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 588999999999999999999999877
No 391
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=48.38 E-value=1.8e+02 Score=29.38 Aligned_cols=89 Identities=15% Similarity=0.155 Sum_probs=58.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHH--
Q 044131 485 ISGYGLHGHGLEALQLFSEMLH--SGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILG-- 560 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~--~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~-- 560 (784)
|.+++..+++.+++...-+--+ +.++|...-...+ .|++.|......++-....++-+ .-+..-|..++.+|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCIL--LysKv~Ep~amlev~~~WL~~p~-Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCIL--LYSKVQEPAAMLEVASAWLQDPS-NQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHH--HHHHhcCHHHHHHHHHHHHhCcc-cCCchhhHHHHHHHHHH
Confidence 6778888888887765444332 2355555444444 47888888888888887775421 122334777776654
Q ss_pred ---hcCCHHHHHHHHHhCC
Q 044131 561 ---RAGQLEKALEFIKGLA 576 (784)
Q Consensus 561 ---r~g~~~eA~~~~~~m~ 576 (784)
=.|.++||++++..-+
T Consensus 167 VLlPLG~~~eAeelv~gs~ 185 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVGSA 185 (309)
T ss_pred HHhccccHHHHHHHHhcCC
Confidence 5699999999996543
No 392
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=48.28 E-value=1.5e+02 Score=24.18 Aligned_cols=63 Identities=16% Similarity=-0.009 Sum_probs=44.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC--cchHHHHHHHHHhcCCh-HHHHHHHHHHH
Q 044131 580 GPAVWGALLGACMIHKDTNLARVASEKLFELDPEN--VGYHVLLSNIYSAERDY-LQAATVRQVVK 642 (784)
Q Consensus 580 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~--~~~~~~l~~~y~~~g~~-~~a~~~~~~m~ 642 (784)
|....-.|...+...|+++.|...+-.+++.+|+. ...-..|..++...|.- .-+.+.|++|.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL~ 86 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKLA 86 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45577778888889999999999988888877644 66677788888887774 35566666553
No 393
>PRK11619 lytic murein transglycosylase; Provisional
Probab=48.14 E-value=5e+02 Score=30.21 Aligned_cols=52 Identities=13% Similarity=-0.130 Sum_probs=32.9
Q ss_pred HHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044131 556 VDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKL 607 (784)
Q Consensus 556 v~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 607 (784)
+..|...|+..+|...+..+.-..+......+.......|..+.+..+..+.
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~ 465 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAG 465 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence 3456667777777777765532345555555556666777777777766543
No 394
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=48.13 E-value=4.7e+02 Score=29.83 Aligned_cols=77 Identities=13% Similarity=0.012 Sum_probs=36.4
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc---CChHHHHH
Q 044131 564 QLEKALEFIKGLAVEPGPAVWGALLGACMIH----KDTNLARVASEKLFELDPENVGYHVLLSNIYSAE---RDYLQAAT 636 (784)
Q Consensus 564 ~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~----g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~---g~~~~a~~ 636 (784)
+.+.+..++.+...+-+......|...+..- .+.+.+...+.++-+.. +.....|+.+|-.- .++..|.+
T Consensus 454 ~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~ 530 (552)
T KOG1550|consen 454 TLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKR 530 (552)
T ss_pred chhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHH
Confidence 3444555554444333444433333333221 24556666665555443 44555566665441 11556666
Q ss_pred HHHHHHh
Q 044131 637 VRQVVKK 643 (784)
Q Consensus 637 ~~~~m~~ 643 (784)
.+....+
T Consensus 531 ~~~~~~~ 537 (552)
T KOG1550|consen 531 YYDQASE 537 (552)
T ss_pred HHHHHHh
Confidence 6655544
No 395
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=47.49 E-value=1.8e+02 Score=24.71 Aligned_cols=78 Identities=18% Similarity=0.144 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 044131 327 LHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQAS 406 (784)
Q Consensus 327 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (784)
.++|..|.+.+...+- ....+.-.-+..+...|++++|...=.....||.++|-+|-. .+.|..+++...+.++..+
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla~~ 98 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLASS 98 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 3444445444444432 233333334455677899999965555667788888887765 4678888888888877665
Q ss_pred C
Q 044131 407 K 407 (784)
Q Consensus 407 g 407 (784)
|
T Consensus 99 g 99 (116)
T PF09477_consen 99 G 99 (116)
T ss_dssp S
T ss_pred C
Confidence 5
No 396
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=45.91 E-value=67 Score=28.84 Aligned_cols=68 Identities=18% Similarity=0.081 Sum_probs=46.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 044131 565 LEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAA 635 (784)
Q Consensus 565 ~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 635 (784)
-+.|.++++-|+ .....-.........|++..|..+.+.++..+|+|...-.+.+++|.+.|.-.+..
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~~~ 124 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSENA 124 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-SSH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhccCH
Confidence 356666666664 22223334445667899999999999999999999999999999888776544433
No 397
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=45.53 E-value=1.2e+02 Score=26.94 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHccC---CHHHHHHHHHHhHHhcCCCCC--cchHHHHHHHHHhcCCHHHHHHHHHhC
Q 044131 510 RPSGVTFLSVLYACSHAG---LVREGDEIFQSMIHDHGFKPL--AEHYACMVDILGRAGQLEKALEFIKGL 575 (784)
Q Consensus 510 ~pd~~t~~~ll~a~~~~g---~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~r~g~~~eA~~~~~~m 575 (784)
.+...+--.+.-++.++. ++.++..+++.+.++ -.|+ .+..--|.-++.|.|+++++..+++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~--~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS--AHPERRRECLYYLAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh--cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHH
Confidence 455555555666666654 466788888887751 1232 333334555677888888888887654
No 398
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=45.29 E-value=5.5e+02 Score=29.83 Aligned_cols=31 Identities=10% Similarity=-0.120 Sum_probs=23.1
Q ss_pred CCCCChhhHHhHHHHHhcccchhHHHHHHHHHHH
Q 044131 205 GTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLK 238 (784)
Q Consensus 205 g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~ 238 (784)
.-.|| |..+.+++.-..+.+.+.+++..+++
T Consensus 208 ~~~PD---y~~vc~c~v~Ldd~~~va~ll~kL~~ 238 (929)
T KOG2062|consen 208 LPSPD---YFSVCQCYVFLDDAEAVADLLEKLVK 238 (929)
T ss_pred CCCCC---eeeeeeeeEEcCCHHHHHHHHHHHHh
Confidence 44555 44566777788888888888888877
No 399
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=45.22 E-value=2.2e+02 Score=30.90 Aligned_cols=139 Identities=12% Similarity=0.091 Sum_probs=92.6
Q ss_pred ccCCHHHHH-HHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 044131 525 HAGLVREGD-EIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLAR 601 (784)
Q Consensus 525 ~~g~~~~a~-~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~ 601 (784)
..|++-.|- ++|..+ +.+.-.|+ +.......+...|.++.|...+.... +.....+...++......|+.+.|.
T Consensus 301 ~~gd~~aas~~~~~~l-r~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 301 ADGDIIAASQQLFAAL-RNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hccCHHHHHHHHHHHH-HhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 345555554 455544 44444454 33334455678899999999997763 4455667888899999999999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCC
Q 044131 602 VASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGD 668 (784)
Q Consensus 602 ~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d 668 (784)
..++-++.-+-+++.....-+.--...|-+|++.-.++..-.-.. +...-|+..-.....|--|+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~--~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP--ETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCC--hhcccceeeeccceeccCcc
Confidence 999999987766665554444444556778888888887765333 33345766555555565554
No 400
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=43.54 E-value=7e+02 Score=30.52 Aligned_cols=183 Identities=11% Similarity=-0.008 Sum_probs=97.1
Q ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 044131 344 SNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACA 423 (784)
Q Consensus 344 ~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 423 (784)
+|..+-.+.++.+...+.- ....+...+..+|...=...+.++.+.+..+. +.... -.+|...-.....++.
T Consensus 696 ~d~~VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~ 767 (897)
T PRK13800 696 PDPVVRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLA 767 (897)
T ss_pred CCHHHHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHH
Confidence 4445555555555433211 12233445555665544455555555443321 11222 2445555555666666
Q ss_pred hhCchHH-HHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHH-HHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044131 424 QLGAISL-GKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEAR-ELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLF 501 (784)
Q Consensus 424 ~~~~~~~-a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~-~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (784)
..+..+. +...+..+.+ .++..+-.+.+..+.+.|..+.+. .+...+.++|...-...+.++...+. .++...+
T Consensus 768 ~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L 843 (897)
T PRK13800 768 TLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPAL 843 (897)
T ss_pred HhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHH
Confidence 6654432 2233333332 346677777777788877765442 34444455665555566666666654 4566666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 044131 502 SEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIH 541 (784)
Q Consensus 502 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 541 (784)
..+.+ .||...-...+.++.....-..+...+....+
T Consensus 844 ~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 844 VEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 66664 56666666666677665434456666666554
No 401
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=42.70 E-value=2.1e+02 Score=28.23 Aligned_cols=81 Identities=9% Similarity=-0.119 Sum_probs=40.5
Q ss_pred HHhcCCHHHHHHHHhhcC--CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHccCCHHHH
Q 044131 457 YAKCGNIVEARELFDLMS--HKSE-VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLS-VLYACSHAGLVREG 532 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~--~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~-ll~a~~~~g~~~~a 532 (784)
|....+++.|..-+.+.. .|++ .-|+.=+.+|.+..+++.+..--.+.++ +.||.+-=.. +..+......+++|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 344455666666555443 3544 3445555566666666666555555554 4555543222 22333444445555
Q ss_pred HHHHHHh
Q 044131 533 DEIFQSM 539 (784)
Q Consensus 533 ~~~~~~m 539 (784)
...+++.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 5544443
No 402
>PF15469 Sec5: Exocyst complex component Sec5
Probab=42.19 E-value=3e+02 Score=25.87 Aligned_cols=87 Identities=15% Similarity=0.115 Sum_probs=43.8
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 044131 518 SVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKD 596 (784)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~ 596 (784)
.-|.-|...|+++.+...|.....-++-.. ....+.. -+.++...++... ...|..|... ...
T Consensus 91 ~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~---------v~~eve~ii~~~r----~~l~~~L~~~---~~s 154 (182)
T PF15469_consen 91 SNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQK---------VWSEVEKIIEEFR----EKLWEKLLSP---PSS 154 (182)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHH---------HHHHHHHHHHHHH----HHHHHHHhCC---CCC
Confidence 455667777777777777776654322111 1111111 1233333333321 1233333322 156
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHH
Q 044131 597 TNLARVASEKLFELDPENVGYHVL 620 (784)
Q Consensus 597 ~~~a~~~~~~~~~l~p~~~~~~~~ 620 (784)
.+....+.+.+++|+|++...+..
T Consensus 155 ~~~~~~~i~~Ll~L~~~~dPi~~~ 178 (182)
T PF15469_consen 155 QEEFLKLIRKLLELNVEEDPIWYW 178 (182)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHH
Confidence 677777788888888755444443
No 403
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=41.43 E-value=5.3e+02 Score=28.51 Aligned_cols=102 Identities=12% Similarity=0.113 Sum_probs=73.2
Q ss_pred CCCCHHHHH-HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHH---HhcCCHHHHHHHHHhCC--CCCCHH
Q 044131 509 IRPSGVTFL-SVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDIL---GRAGQLEKALEFIKGLA--VEPGPA 582 (784)
Q Consensus 509 ~~pd~~t~~-~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l---~r~g~~~eA~~~~~~m~--~~p~~~ 582 (784)
..|+..|+. .++.-+-..|-+++|...|..+.. --+|+...|..||..= ..+| +.-+.++++.|. +..|+.
T Consensus 455 ~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 455 IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSD 531 (568)
T ss_pred cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChH
Confidence 467777764 456667778888999999888863 2344577777777643 3334 777778887773 557888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc-CCCC
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFE-LDPE 613 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~-l~p~ 613 (784)
.|...+.--..+|..+-+-.++.++++ ++|+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~ktl~~~ 563 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMKTLQGE 563 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHHhhChh
Confidence 898888888888888888888877775 5554
No 404
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=41.19 E-value=55 Score=22.62 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=12.4
Q ss_pred HHHHHHhCCChhHHHHHHHHHHh
Q 044131 383 MIAGYTQNGLTEEAISLFQEMQA 405 (784)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~ 405 (784)
|..+|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 34455555555555555555554
No 405
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=40.88 E-value=1e+02 Score=31.83 Aligned_cols=90 Identities=10% Similarity=0.053 Sum_probs=68.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGL-A---VEP--GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNI 624 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m-~---~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 624 (784)
+|--=.+-|.+..++..|.+.+.+- . -.| +.+.|+.=..+-...||+..+..-..+++.++|.+.-.|..=+..
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 3444455677888899999888653 1 234 355676666666778999999999999999999999999988888
Q ss_pred HHhcCChHHHHHHHHH
Q 044131 625 YSAERDYLQAATVRQV 640 (784)
Q Consensus 625 y~~~g~~~~a~~~~~~ 640 (784)
+....++++|....+.
T Consensus 163 ~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888887777766544
No 406
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=40.23 E-value=2.6e+02 Score=28.30 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=42.5
Q ss_pred HHHHHhCCChhHHHHHHHHHHh--CCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHh--
Q 044131 384 IAGYTQNGLTEEAISLFQEMQA--SKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAK-- 459 (784)
Q Consensus 384 i~~~~~~g~~~~A~~l~~~m~~--~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k-- 459 (784)
|.+++..+++.+++...-+--. +.++|...-... -.|++.+.+....++-....+..-..+..-|.+++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCI--LLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCI--LLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHH--HHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 6777777888777765443322 123333333322 2345566666555555555443222233335555555543
Q ss_pred ---cCCHHHHHHHH
Q 044131 460 ---CGNIVEARELF 470 (784)
Q Consensus 460 ---~g~~~~A~~~f 470 (784)
.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 35555555544
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=40.16 E-value=72 Score=30.43 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 044131 577 VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDP 612 (784)
Q Consensus 577 ~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p 612 (784)
..|++.++..++.++...|+.++|++..+++..+-|
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 478888888888888888888888888888888888
No 408
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=39.92 E-value=65 Score=22.24 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=14.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC
Q 044131 484 MISGYGLHGHGLEALQLFSEMLHS 507 (784)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~ 507 (784)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 345566666666666666666543
No 409
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=39.64 E-value=70 Score=31.35 Aligned_cols=50 Identities=22% Similarity=0.241 Sum_probs=27.7
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
.+..+++....-..++++++|+..-.+..|+........+++|..+....
T Consensus 55 lk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 55 LKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 33455555555555555555555555555555555555555555554433
No 410
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=39.50 E-value=4.5e+02 Score=27.17 Aligned_cols=178 Identities=14% Similarity=0.105 Sum_probs=0.0
Q ss_pred CHHHHHHHHhhc--CCCChhHHHHHHHHHHhCC-----ChhHHHHHHHH---------HHhCCCCCC--HHHHHHHHHHH
Q 044131 361 EMEAARKLFDES--SEKSLASWNAMIAGYTQNG-----LTEEAISLFQE---------MQASKVAPN--PVTVSSILSAC 422 (784)
Q Consensus 361 ~~~~A~~~f~~~--~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~---------m~~~g~~pd--~~t~~~ll~a~ 422 (784)
.++.+..+...+ .+.+...|..++..+.... ..+.....|+. +.+.|..++ .......++..
T Consensus 55 ~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~lr~~ 134 (324)
T PF11838_consen 55 SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGEDHNDRLLRAL 134 (324)
T ss_dssp -HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--SCHHHHHHHHH
T ss_pred CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccccHHHHHHHHH
Q ss_pred -hhhCc-----hHHHHHHHHHHHHcCC----CCchhhHhHHHHHHHhcCCHHHHHHHHhhcC-CCCHHHHHHHHHHHHHc
Q 044131 423 -AQLGA-----ISLGKWVHELVKSRNF----ESNIYVSTALIDMYAKCGNIVEARELFDLMS-HKSEVTWNTMISGYGLH 491 (784)
Q Consensus 423 -~~~~~-----~~~a~~i~~~~~~~g~----~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~ 491 (784)
..... .+.+.+.+......+. ..++.....+.....+.|..+.-..+++... .++..-...++.+.+..
T Consensus 135 ~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~ 214 (324)
T PF11838_consen 135 LLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACS 214 (324)
T ss_dssp HHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-
T ss_pred HHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhcc
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 044131 492 GHGLEALQLFSEMLHSG-IRPSGVTFLSVLYACSHAGLVREGDEIFQS 538 (784)
Q Consensus 492 g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 538 (784)
.+.+...++++.....+ +++....+....-+....--.+.+++++..
T Consensus 215 ~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 215 PDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 411
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=38.98 E-value=11 Score=27.24 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=8.4
Q ss_pred cccCCcccchh
Q 044131 741 LRVCLDCHTAT 751 (784)
Q Consensus 741 ~r~c~dch~~~ 751 (784)
.-||+|||.--
T Consensus 20 iYiCgdC~~en 30 (62)
T KOG3507|consen 20 IYICGDCGQEN 30 (62)
T ss_pred EEEeccccccc
Confidence 35899999743
No 412
>PRK14015 pepN aminopeptidase N; Provisional
Probab=38.79 E-value=5.9e+02 Score=30.92 Aligned_cols=118 Identities=19% Similarity=0.179 Sum_probs=67.6
Q ss_pred HHHHHHHHccCC--HHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 044131 517 LSVLYACSHAGL--VREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLAVEP-GPAVWGALLGACM 592 (784)
Q Consensus 517 ~~ll~a~~~~g~--~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~ 592 (784)
.+.|.++.+.+. -+++++-|. +++.-.|- ..-|-.+...-.+.+-++....+.+.-.+.+ ++.-.++|++++.
T Consensus 718 ~~al~~l~~~~~~~~~~~l~~f~---~~~~~~~lv~~kwf~~qa~~~~~~~~~~v~~l~~hp~f~~~npn~~ral~~~f~ 794 (875)
T PRK14015 718 LAALSALVNADLPERDEALADFY---DRWKDDPLVMDKWFALQATSPAPDTLERVRALMQHPAFDLKNPNRVRSLIGAFA 794 (875)
T ss_pred HHHHHHHhcCCChHHHHHHHHHH---HHhCCCchhhHHHHHHHhCCCCcCHHHHHHHHhcCCCCCCCCCcHHHHHHHHHh
Confidence 344555555443 233444443 33343444 3444444433333333444444443322333 3446788888885
Q ss_pred hcCC------HHHHH-HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 044131 593 IHKD------TNLAR-VASEKLFELDPENVGYHVLLSNIYSAERDYLQAATV 637 (784)
Q Consensus 593 ~~g~------~~~a~-~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~ 637 (784)
..+- -..|- -+++.++++++-||..-..|...+.+-.++++..+.
T Consensus 795 ~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~~~~~~~~r~~ 846 (875)
T PRK14015 795 AANPAGFHAADGSGYRFLADQILALDKINPQVAARLATPLIRWRRYDPKRQA 846 (875)
T ss_pred hcCCcccCCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhccCHHHHH
Confidence 4332 23343 457888999999999999999999888888877653
No 413
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=38.53 E-value=2.1e+02 Score=25.14 Aligned_cols=42 Identities=10% Similarity=0.112 Sum_probs=33.9
Q ss_pred HHHHHHHHHhc--CCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 044131 599 LARVASEKLFE--LDPENVGYHVLLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 599 ~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 640 (784)
.+..+++.+.. +.-..+..|...+..+...|++++|.++++.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67777777765 5667788999999999999999999999864
No 414
>TIGR02414 pepN_proteo aminopeptidase N, Escherichia coli type. The M1 family of zinc metallopeptidases contains a number of distinct, well-separated clades of proteins with aminopeptidase activity. Several are designated aminopeptidase N, EC 3.4.11.2, after the Escherichia coli enzyme, suggesting a similar activity profile. This family consists of all aminopeptidases closely related to E. coli PepN and presumed to have similar (not identical) function. Nearly all are found in Proteobacteria, but members are found also in Cyanobacteria, plants, and apicomplexan parasites. This family differs greatly in sequence from the family of aminopeptidases typified by Streptomyces lividans PepN (TIGR02412), from the membrane bound aminopeptidase N family in animals, etc.
Probab=38.43 E-value=6e+02 Score=30.81 Aligned_cols=152 Identities=14% Similarity=0.110 Sum_probs=78.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHH
Q 044131 482 NTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILG 560 (784)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~ 560 (784)
|..+.-++..+..+......++..+.. |..--.+.|.++.+.+. .+....++..-+++.-.|- ..-|-.+...-.
T Consensus 676 n~~l~~l~~~~~~~~~~~~~~~~~~a~---~mtd~~~al~~l~~~~~-~~~~~~l~~f~~~~~~~~lv~~kwf~~qa~~~ 751 (863)
T TIGR02414 676 NACLSYLSAADDAEIRNLALEQFKSAD---NMTDRLAALSALVHFES-DFRERALAAFYQKWKDDPLVMDKWFALQATSP 751 (863)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCC---CHHHHHHHHHHHhcCCC-hhHHHHHHHHHHHHCCCchhHHHHHHHHhCCC
Confidence 444444444454433233333333332 22223344455554333 2222333333333333444 334444333333
Q ss_pred hcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC------CHHHH-HHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 044131 561 RAGQLEKALEFIKGLAVEP-GPAVWGALLGACMIHK------DTNLA-RVASEKLFELDPENVGYHVLLSNIYSAERDYL 632 (784)
Q Consensus 561 r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~g------~~~~a-~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 632 (784)
+.+-++...++.+.-.+.+ ++.-..+|++++...+ .-..| .-+++.+++++|-||..-..|...+.+-.+++
T Consensus 752 ~~~~~~~v~~l~~h~~f~~~npn~~ral~~~f~~~n~~~fh~~~g~gy~~~~~~i~~ld~~Np~~aarl~~~~~~w~~~~ 831 (863)
T TIGR02414 752 RPDTLERVKALLQHPAFDLKNPNRVRALIGAFANNNLVRFHDISGSGYRFLADQIIAIDRFNPQVAARLLEPLTRWRKLD 831 (863)
T ss_pred cccHHHHHHHHhcCCCCCcCCCcHHHHHHHHHHhcCcccccCCCCcHHHHHHHHHHHhcCcCHHHHHHHHHHhhhhhcCC
Confidence 3334444444433322332 3446788888885332 22333 44678889999999999999999998888888
Q ss_pred HHHHH
Q 044131 633 QAATV 637 (784)
Q Consensus 633 ~a~~~ 637 (784)
+..+.
T Consensus 832 ~~r~~ 836 (863)
T TIGR02414 832 PKRQE 836 (863)
T ss_pred HHHHH
Confidence 77653
No 415
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=36.77 E-value=44 Score=33.74 Aligned_cols=54 Identities=11% Similarity=0.193 Sum_probs=33.6
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP 579 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p 579 (784)
..+.|+.++|..+|+... .+.|+ ++...-+........++-+|-.++-+. .+.|
T Consensus 126 ~~~~Gk~ekA~~lfeHAl---alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHAL---ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHhccchHHHHHHHHHHH---hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 357899999999999876 56676 444444444444445555666665443 4555
No 416
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=36.76 E-value=6.3e+02 Score=28.04 Aligned_cols=158 Identities=14% Similarity=0.162 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC------cc
Q 044131 477 SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL------AE 550 (784)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~------~~ 550 (784)
+-..+-.++..|.++ ..++-..+++++.+. .-|.+.+...+.-+...++.+.+..+|..+.. .+.|. .+
T Consensus 98 ~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~yEkik~sk~a~~f~Ka~y--rfI~~~q~~~i~e 172 (711)
T COG1747 98 SKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADKYEKIKKSKAAEFFGKALY--RFIPRRQNAAIKE 172 (711)
T ss_pred hHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHHHHHhchhhHHHHHHHHHH--HhcchhhhhhHHH
Confidence 334444455555555 334445555555542 23344444444333334555555555555442 22221 12
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------------
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGLA----VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPEN------------ 614 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m~----~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~------------ 614 (784)
.|..++...+ .+.+.-+.+..+.. ...-.+.+.-+-.-|....|+.+|.++...+++++..|
T Consensus 173 vWeKL~~~i~--dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lR 250 (711)
T COG1747 173 VWEKLPELIG--DDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLR 250 (711)
T ss_pred HHHHHHHhcc--ccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHH
Confidence 3333333221 12233333332221 11122233333334444455555555555555444332
Q ss_pred --------cchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 615 --------VGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 615 --------~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
..-|...+|+-..-.++-++..-|+..
T Consensus 251 d~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~ 285 (711)
T COG1747 251 DKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKL 285 (711)
T ss_pred HHhccchhHHHHHHhcchhhccccHHHHHHHHHHH
Confidence 233455555555556666776666554
No 417
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=36.62 E-value=79 Score=25.96 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=33.9
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCC---------cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 592 MIHKDTNLARVASEKLFELDPEN---------VGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~---------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
...||+..|...+.+.++..... ......++.++...|++++|.+.++...
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi 68 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAI 68 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 35667777766666666532211 1234568888999999999998876653
No 418
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=36.57 E-value=33 Score=30.15 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=24.5
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044131 490 LHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYAC 523 (784)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 523 (784)
..|.-.+|..+|++|++.|-+||. |..|+.++
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346667899999999999999986 45566554
No 419
>PRK10941 hypothetical protein; Provisional
Probab=36.21 E-value=2e+02 Score=29.20 Aligned_cols=67 Identities=18% Similarity=0.075 Sum_probs=49.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHH
Q 044131 554 CMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVL 620 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 620 (784)
.+-..|.+.++++.|+...+.+ .+.| ++.-|.--.-.+.+.|....|..-++..++.-|+++..-..
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 3455677888888888888776 3455 45567777777888888888888888888888888765443
No 420
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=36.14 E-value=14 Score=20.49 Aligned_cols=9 Identities=33% Similarity=0.519 Sum_probs=6.2
Q ss_pred ccchhhhhh
Q 044131 747 CHTATKFIS 755 (784)
Q Consensus 747 ch~~~k~~s 755 (784)
-|+++|+||
T Consensus 12 lhe~ikli~ 20 (23)
T PF08225_consen 12 LHEVIKLIN 20 (23)
T ss_pred HHHHHHHHh
Confidence 477777776
No 421
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=36.11 E-value=57 Score=35.22 Aligned_cols=123 Identities=13% Similarity=0.113 Sum_probs=64.7
Q ss_pred CchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCC-------------CHHHHHHHHHHH----
Q 044131 426 GAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHK-------------SEVTWNTMISGY---- 488 (784)
Q Consensus 426 ~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~-------------~~~~~~~li~~~---- 488 (784)
+.+++-.++++.+.+.| .+ .+...-||.|.+.+++++|...+++-.+. .+.....++.+.
T Consensus 68 ~~~~e~i~lL~~l~~~g-~a--d~lp~TIDSyTR~n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~Pv 144 (480)
T TIGR01503 68 ALLDEHIELLRTLQEEG-GA--DFLPSTIDAYTRQNRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPL 144 (480)
T ss_pred CcHHHHHHHHHHHHHcc-CC--CccceeeecccccccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCe
Confidence 34555566666666654 12 24445577777777877777777654321 222333333332
Q ss_pred -HHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHh---H---HhcCCCCCcchHHHH
Q 044131 489 -GLHGHGLEALQLFSEMLHSGIRPS---GVTFLSVLYACSHAGLVREGDEIFQSM---I---HDHGFKPLAEHYACM 555 (784)
Q Consensus 489 -~~~g~~~~A~~~~~~m~~~g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m---~---~~~~~~p~~~~~~~l 555 (784)
.+||. .+|..+++-+...|+... .++|+. -|++.=-++++...|+.+ . ++.|+..+.+.+.+|
T Consensus 145 QvRHGt-pDarlL~e~~~a~G~~a~EGG~ISYnl---PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpL 217 (480)
T TIGR01503 145 QIRHGT-PDARLLAEIILAGGFTSFEGGGISYNI---PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPL 217 (480)
T ss_pred eccCCC-CcHHHHHHHHHHcCCCccCCCcceecc---ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCC
Confidence 23443 246667777777775443 234332 244444566666655533 2 123666666666554
No 422
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=35.87 E-value=4.9e+02 Score=26.55 Aligned_cols=51 Identities=10% Similarity=0.131 Sum_probs=24.8
Q ss_pred CchhhHhHHHHHHHhcCCHHHHHHHHhhcC-----CCCHHHHHHHHHHHHHcCCHH
Q 044131 445 SNIYVSTALIDMYAKCGNIVEARELFDLMS-----HKSEVTWNTMISGYGLHGHGL 495 (784)
Q Consensus 445 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-----~~~~~~~~~li~~~~~~g~~~ 495 (784)
++..+....+..+++.+++..-.++++... ..|...|..+|.....+|+..
T Consensus 200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~ 255 (292)
T PF13929_consen 200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQE 255 (292)
T ss_pred CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHH
Confidence 334444444555555555555554444332 234555555555555555543
No 423
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=35.51 E-value=79 Score=34.13 Aligned_cols=43 Identities=16% Similarity=0.241 Sum_probs=30.6
Q ss_pred HHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 572 IKGLAVEPGP--AVWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 572 ~~~m~~~p~~--~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
|....++|.. .++++-++.+.+++|+..|-..+++++++.|..
T Consensus 289 FThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 289 FTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 3333456643 377888889999999999999999999999863
No 424
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=35.14 E-value=1.5e+02 Score=25.26 Aligned_cols=27 Identities=19% Similarity=0.365 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
-|..++.-|..+|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 355566666666666666666666554
No 425
>COG4896 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.02 E-value=20 Score=26.19 Aligned_cols=23 Identities=39% Similarity=0.697 Sum_probs=17.1
Q ss_pred CCeEEEEeccccCCcccc--hhhhhhhhc
Q 044131 732 GTEIRIIKNLRVCLDCHT--ATKFISKVT 758 (784)
Q Consensus 732 ~~~~~~~kn~r~c~dch~--~~k~~s~~~ 758 (784)
..|||-. +|.|||. ++|-+|++-
T Consensus 26 N~PIrty----mC~eC~~Rva~kt~~R~~ 50 (68)
T COG4896 26 NKPIRTY----MCPECEHRVAIKTISRVN 50 (68)
T ss_pred CCCceeE----echhhHhhhchhhHHHhc
Confidence 4577765 9999995 677777653
No 426
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=34.93 E-value=1.6e+02 Score=27.66 Aligned_cols=36 Identities=25% Similarity=0.405 Sum_probs=27.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 586 ALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 586 ~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
.....|.+.|.+++|++++++.++ +|++...-..|.
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~ 151 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLL 151 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHH
Confidence 345689999999999999999998 787655433333
No 427
>PRK13342 recombination factor protein RarA; Reviewed
Probab=34.82 E-value=6.3e+02 Score=27.48 Aligned_cols=101 Identities=16% Similarity=0.070 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhc---CCCCHHHHHHHH
Q 044131 409 APNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLM---SHKSEVTWNTMI 485 (784)
Q Consensus 409 ~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~---~~~~~~~~~~li 485 (784)
..+......++..+ .|+...+..+++.+...+-..+ .+...+++... ..++...+..++
T Consensus 173 ~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~~~~~~~~~d~~~~~~~~~i 234 (413)
T PRK13342 173 ELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEALQKRAARYDKDGDEHYDLI 234 (413)
T ss_pred CCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHHHhhhhhccCCCccHHHHHH
Confidence 44444455454443 5777777777776654311111 12222222221 122333445556
Q ss_pred HHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044131 486 SGYGL---HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAG 527 (784)
Q Consensus 486 ~~~~~---~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 527 (784)
+++.+ .++.+.|+..+.+|.+.|..|..+.-..+..++...|
T Consensus 235 sa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig 279 (413)
T PRK13342 235 SALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIG 279 (413)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 66655 4789999999999999998888776555555554444
No 428
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=34.64 E-value=3.9e+02 Score=27.07 Aligned_cols=125 Identities=13% Similarity=0.098 Sum_probs=0.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhhhCchHHHHHHHHHHHHc----CCCCchhhHh
Q 044131 383 MIAGYTQNGLTEEAISLFQEMQASKVAPNP-------VTVSSILSACAQLGAISLGKWVHELVKSR----NFESNIYVST 451 (784)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-------~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~~~~~~~~ 451 (784)
+..-..+.+++++|+..+.+....|+..|. .|...+...|...|+...-.+......+. .-+....+..
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiir 88 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIR 88 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHH
Q ss_pred HHHHHH-HhcCCHHHHHHHHhhcCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 044131 452 ALIDMY-AKCGNIVEARELFDLMSH---------KSEVTWNTMISGYGLHGHGLEALQLFSEMLHS 507 (784)
Q Consensus 452 ~Li~~y-~k~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 507 (784)
+|++++ ....++++-..+.....+ --...-.-+|..+.+.|++.+|+.+......+
T Consensus 89 tLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 89 TLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
No 429
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=34.63 E-value=4.1e+02 Score=26.33 Aligned_cols=50 Identities=22% Similarity=0.129 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhc-----CCCCCcchHHHHHH----HHHhcCChHHHHHHHHHHHhCCC
Q 044131 597 TNLARVASEKLFE-----LDPENVGYHVLLSN----IYSAERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 597 ~~~a~~~~~~~~~-----l~p~~~~~~~~l~~----~y~~~g~~~~a~~~~~~m~~~~~ 646 (784)
.+.|..+|+++++ +.|.+|...-+..| .|-..|+.++|.++-+..-+..+
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 3667777777764 67888765444333 34568999999998877655433
No 430
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=34.51 E-value=88 Score=23.45 Aligned_cols=29 Identities=21% Similarity=0.319 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 512 SGVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 512 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
|-.--..++.++...|++++|.++.+.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334445555555555555555555554
No 431
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=34.47 E-value=1.2e+02 Score=24.12 Aligned_cols=48 Identities=17% Similarity=0.023 Sum_probs=32.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHH
Q 044131 490 LHGHGLEALQLFSEMLHSGIRPSG--VTFLSVLYACSHAGLVREGDEIFQ 537 (784)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~~a~~~~~ 537 (784)
...+.++|+..|+...+.-..|.. .++..++.|++..|.+++.+++-.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888888887775433322 356677888888888888777643
No 432
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=34.38 E-value=1.1e+02 Score=29.06 Aligned_cols=31 Identities=16% Similarity=0.134 Sum_probs=16.3
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 510 RPSGVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 510 ~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
.|+..+|..++.++...|+.++|.+..+++.
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555555555555555555555555544
No 433
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=34.24 E-value=46 Score=29.45 Aligned_cols=73 Identities=18% Similarity=0.240 Sum_probs=51.0
Q ss_pred EEEECCEEEEEEeCC-CCCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchHHHHhhhhhHHHHHHHHHhhccCCCC
Q 044131 654 LIEVGGTPHVFTSGD-QLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGLIATEPG 732 (784)
Q Consensus 654 ~i~~~~~~~~f~~~d-~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~k~~~~~~hse~la~~~~l~~~~~~ 732 (784)
|+.-.+..-.|..|| ..+|++..+-..|++|..++.. . +..++--|+++ ++.||.-||+.+.|
T Consensus 30 ~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~--~v~~akVDiD~----------~~~LA~~fgV~siP-- 93 (132)
T PRK11509 30 WLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--Y--TWQVAIADLEQ----------SEAIGDRFGVFRFP-- 93 (132)
T ss_pred HHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--C--ceEEEEEECCC----------CHHHHHHcCCccCC--
Confidence 333344445899999 4789999999999999887631 1 12344455553 46799999999999
Q ss_pred CeEEEEecccc
Q 044131 733 TEIRIIKNLRV 743 (784)
Q Consensus 733 ~~~~~~kn~r~ 743 (784)
++-++||=+.
T Consensus 94 -TLl~FkdGk~ 103 (132)
T PRK11509 94 -ATLVFTGGNY 103 (132)
T ss_pred -EEEEEECCEE
Confidence 6777777543
No 434
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=34.12 E-value=5.3e+02 Score=31.65 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=57.4
Q ss_pred HHHHhcCCHHHHHHHHhhcCC------------------------------CC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q 044131 455 DMYAKCGNIVEARELFDLMSH------------------------------KS--EVTWNTMISGYGLHGHGLEALQLFS 502 (784)
Q Consensus 455 ~~y~k~g~~~~A~~~f~~~~~------------------------------~~--~~~~~~li~~~~~~g~~~~A~~~~~ 502 (784)
-+|..+|...+|.+.|.+... +. ..-|-..+.-+-+++..+++.++-.
T Consensus 928 ~~yl~tge~~kAl~cF~~a~Sg~ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~ 1007 (1480)
T KOG4521|consen 928 IAYLGTGEPVKALNCFQSALSGFGEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAV 1007 (1480)
T ss_pred eeeecCCchHHHHHHHHHHhhccccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 347788899999888876541 01 1234455666667777777777666
Q ss_pred HHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHH
Q 044131 503 EMLHSGIRPSG----VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLE 566 (784)
Q Consensus 503 ~m~~~g~~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~ 566 (784)
..++. ++||. .+++.+..-....|.+-+|.+..-+ .|| ......++-.+..+|.++
T Consensus 1008 ~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~-------npdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1008 KAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR-------NPDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc-------CCcHHHHHHHHHHHHHHHHhccchH
Confidence 66653 33332 2344444555555555555444322 233 223444555566666543
No 435
>TIGR00686 phnA alkylphosphonate utilization operon protein PhnA. The protein family includes an uncharacterized member designated phnA in Escherichia coli, part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. This protein is not related to the characterized phosphonoacetate hydrolase designated PhnA by Kulakova, et al. (2001, 1997).
Probab=33.76 E-value=22 Score=29.68 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=20.3
Q ss_pred EeccccCCcc-cchhhhhhhhcCceEEEecCCc
Q 044131 738 IKNLRVCLDC-HTATKFISKVTGRVIVVRDANR 769 (784)
Q Consensus 738 ~kn~r~c~dc-h~~~k~~s~~~~r~i~~rd~~r 769 (784)
.-++-||.+| |+|.+--.....-..++||+|-
T Consensus 16 dg~~~iCpeC~~EW~~~~~~~~~~~~~~kDsnG 48 (109)
T TIGR00686 16 DGTQLICPSCLYEWNENEVNDDDDELIVKDCNG 48 (109)
T ss_pred cCCeeECccccccccccccccccCCceEEcCCC
Confidence 3467899999 7887653222222257899873
No 436
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=33.57 E-value=2.2e+02 Score=23.14 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=30.2
Q ss_pred hcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 044131 459 KCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEAL 498 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 498 (784)
+.|+.+.|+++++.++ +....+...+.++...|+.+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 5578888888888888 77778888888888887766554
No 437
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=33.37 E-value=66 Score=24.10 Aligned_cols=30 Identities=20% Similarity=0.108 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 477 SEVTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
|-.-.-.+|.||.+.|++++|.++.+++.+
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444455678889999999999988888765
No 438
>COG5431 Uncharacterized metal-binding protein [Function unknown]
Probab=32.89 E-value=13 Score=30.42 Aligned_cols=16 Identities=44% Similarity=0.970 Sum_probs=11.4
Q ss_pred CccccccCCcCCCCCC
Q 044131 768 NRFHHFKGGVCSCGDY 783 (784)
Q Consensus 768 ~rfh~f~~g~csc~d~ 783 (784)
+|=---+.|.|||.||
T Consensus 42 ~rdYIl~~gfCSCp~~ 57 (117)
T COG5431 42 ERDYILEGGFCSCPDF 57 (117)
T ss_pred ccceEEEcCcccCHHH
Confidence 3334557789999987
No 439
>PF13971 Mei4: Meiosis-specific protein Mei4
Probab=32.40 E-value=21 Score=37.50 Aligned_cols=28 Identities=32% Similarity=0.580 Sum_probs=20.5
Q ss_pred HHhhhhhHHHHHHHHHhhccC-CCCCeEE
Q 044131 709 KELMMKVHSEKLAIAFGLIAT-EPGTEIR 736 (784)
Q Consensus 709 k~~~~~~hse~la~~~~l~~~-~~~~~~~ 736 (784)
++..-..+.-|||+|+++|.+ |||...|
T Consensus 12 ~~~~wyl~tsKlAlAlAIIrsKPpg~s~R 40 (375)
T PF13971_consen 12 QQLSWYLKTSKLALALAIIRSKPPGKSSR 40 (375)
T ss_pred cchhHHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 444555677899999999976 6786544
No 440
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=31.27 E-value=69 Score=32.63 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=33.2
Q ss_pred eHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHH
Q 044131 278 SCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLI 318 (784)
Q Consensus 278 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 318 (784)
-||.-|..-++.|+.++|+.++++..+.|+.--..||...+
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 36788999999999999999999999998776666665443
No 441
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=30.53 E-value=1.6e+02 Score=25.88 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFE--LDPENVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
+|-..+..| ++ ...+++.+.. +.-..+..|...+..+-..|+|.+|.++++
T Consensus 71 iWi~ya~~~---~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 71 IWLKYADNC---DE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555555544 22 4556666654 445667789999999999999999999876
No 442
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=29.97 E-value=5e+02 Score=24.88 Aligned_cols=36 Identities=11% Similarity=-0.000 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 044131 478 EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV 514 (784)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~ 514 (784)
....+.++..+...|+++.|-+.|.-++... +.|..
T Consensus 41 l~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR 76 (199)
T PF04090_consen 41 LRVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIR 76 (199)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChH
Confidence 4467778888888899999999998888753 44443
No 443
>PF01147 Crust_neurohorm: Crustacean CHH/MIH/GIH neurohormone family; InterPro: IPR001166 Arthropod express a family of neuropeptides [] which so far consist of the following types of neurohormones: Crustacean hyperglycemic hormone (CHH). CHH is primarily involved in blood sugar regulation, but also plays a role in the control of molting and reproduction. Molt-inhibiting hormone (MIH). MIH inhibits Y-organs where molting hormone (ecdysteroid) is secreted. A molting cycle is initiated when MIH secretion diminishes or stops. Gonad-inhibiting hormone (GIH), also known as vitellogenesis-inhibiting hormone (VIH) because of its role in inhibiting vitellogenesis in female animals. Mandibular organ-inhibiting hormone (MOIH). MOIH represses the synthesis of methyl farnesoate, the precursor of insect juvenile hormone III in the mandibular organ. Ion transport peptide (ITP) from locust. ITP stimulates salt and water reabsorption and inhibits acid secretion in the ileum of the locust. Caenorhabditis elegans hypothetical protein ZC168.2. These neurohormones are peptides of 70 to 80 residues which are processed from larger size precursors. They contain six conserved cysteines that are involved in disulphide bonds, as shown in the following schematic representation. ; GO: 0005184 neuropeptide hormone activity, 0005576 extracellular region; PDB: 1J0T_A.
Probab=29.70 E-value=8.9 Score=29.69 Aligned_cols=14 Identities=43% Similarity=0.610 Sum_probs=10.7
Q ss_pred eccccCCcccchhh
Q 044131 739 KNLRVCLDCHTATK 752 (784)
Q Consensus 739 kn~r~c~dch~~~k 752 (784)
|--|||.|||+...
T Consensus 18 kldrVC~DCyNl~R 31 (73)
T PF01147_consen 18 KLDRVCDDCYNLFR 31 (73)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHc
Confidence 34599999998753
No 444
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=29.46 E-value=1.9e+02 Score=20.30 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=23.1
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044131 388 TQNGLTEEAISLFQEMQASKVAPNPVTVSSILS 420 (784)
Q Consensus 388 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~ 420 (784)
.+.|-..++..++++|.+.|+..+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456666777777777777777777766666654
No 445
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=29.43 E-value=59 Score=28.66 Aligned_cols=33 Identities=18% Similarity=0.352 Sum_probs=25.0
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044131 388 TQNGLTEEAISLFQEMQASKVAPNPVTVSSILSAC 422 (784)
Q Consensus 388 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 422 (784)
-..|.-..|..+|++|+..|-+||. +..|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 3456778899999999999999985 45555544
No 446
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=29.01 E-value=3.2e+02 Score=22.24 Aligned_cols=39 Identities=13% Similarity=0.134 Sum_probs=27.7
Q ss_pred hcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHH
Q 044131 358 RLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAI 397 (784)
Q Consensus 358 ~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 397 (784)
..|+.+.|+++++.++ +..-.+..++.++-+.|..+-|.
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4577777777777777 77777777777777776655443
No 447
>PF09045 L27_2: L27_2; InterPro: IPR015132 The L27_2 domain is a protein-protein interaction domain capable of organising scaffold proteins into supramolecular assemblies by formation of heteromeric L27_2 domain complexes. L27_2 domain-mediated protein assemblies have been shown to play essential roles in cellular processes including asymmetric cell division, establishment and maintenance of cell polarity, and clustering of receptors and ion channels. Members of this family form specific heterotetrameric complexes, in which each domain contains three alpha-helices. The two N-terminal helices of each L27_2 domain pack together to form a tight, four-helix bundle in the heterodimer, whilst the third helix of each L27_2 domain forms another four-helix bundle that assembles the two units of the heterodimer into a tetramer []. ; PDB: 3UIT_A 1VF6_B.
Probab=28.97 E-value=89 Score=22.90 Aligned_cols=34 Identities=32% Similarity=0.466 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHcCcccCCCccccccchHHHHhhhhhHHHHHHHHHhhccCC
Q 044131 677 IYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGLIATE 730 (784)
Q Consensus 677 i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~k~~~~~~hse~la~~~~l~~~~ 730 (784)
+...+++|..++++.|-. -|+|+|+.-...+.+|
T Consensus 5 al~~lerlq~KL~~rGd~--------------------s~~e~L~~l~~~LqSP 38 (58)
T PF09045_consen 5 ALQALERLQAKLKERGDT--------------------SHSEKLSLLKDTLQSP 38 (58)
T ss_dssp HHHHHHHHHHHHHHCT----------------------TTHHHHHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHccCc--------------------ccHHHHHHHHHHHhCh
Confidence 456789999999998843 3788888877666554
No 448
>PF14376 Haem_bd: Haem-binding domain
Probab=28.90 E-value=20 Score=32.08 Aligned_cols=9 Identities=44% Similarity=1.265 Sum_probs=7.4
Q ss_pred ccCCcccch
Q 044131 742 RVCLDCHTA 750 (784)
Q Consensus 742 r~c~dch~~ 750 (784)
+-|.|||+-
T Consensus 42 ~~CydCHSn 50 (137)
T PF14376_consen 42 NSCYDCHSN 50 (137)
T ss_pred ccccccCCC
Confidence 579999973
No 449
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=28.78 E-value=1e+02 Score=31.42 Aligned_cols=45 Identities=24% Similarity=0.250 Sum_probs=35.5
Q ss_pred CCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044131 476 KSEV-TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVL 520 (784)
Q Consensus 476 ~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 520 (784)
+|.. -||..|..-.+.|+.++|+.+++|..+.|+.--..||...+
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 3443 56789999999999999999999999999776666665443
No 450
>PRK09169 hypothetical protein; Validated
Probab=28.54 E-value=1.6e+03 Score=30.30 Aligned_cols=466 Identities=11% Similarity=-0.006 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHcCCCC-----CChhhHHhHHHHHhcccchhHHHHHHHHH-------HHhCCCCc
Q 044131 177 WNSMISGLMKNCCFQDSIWVFGDMVRNGGTW-----LDSTSVAAVLPAVAEVQELRLGMEIQCLG-------LKLGFHDH 244 (784)
Q Consensus 177 ~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~-----pd~~t~~~ll~a~~~~~~~~~a~~~~~~~-------~~~g~~~~ 244 (784)
|..+...+++.-+.....+.+..+-.. .+. .|...+..+|+++++-.+-..+...-..+ .+.-...|
T Consensus 125 ~a~l~n~lsK~~d~~aC~~a~a~ia~q-~~~~~~~~l~~~~v~~lLNalSKWP~~~~c~~aa~~lA~~la~~~~l~~al~ 203 (2316)
T PRK09169 125 LAHLGNKLSKYPDRPACMAAIAWIAGQ-LLDALREALDAISFALLLNALSKWPDNTDCQTAAEQLADRLASDSRLLQAMD 203 (2316)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHH-HHHHHHhhhhhHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCHHHHHhcc
Q ss_pred hhHHHHHHHHHHhcCChHHHHHHHhcC-----------CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHH-------cC
Q 044131 245 VYVLTGLVSFYSKCGEVERAELLFRDI-----------VRPDLISCNAMISGYTCNGKTESSLRLFRQLLA-------SA 306 (784)
Q Consensus 245 ~~~~~~li~~y~~~g~~~~A~~~f~~~-----------~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------~g 306 (784)
..-...++++++|.-+-...+..-+.+ ..-+......++.++.+-.+.+.+...-..+-. ..
T Consensus 204 ~q~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~~~l~~q~va~~LNAlSKWp~~~~c~~aa~~lA~rla~~~~lr 283 (2316)
T PRK09169 204 AQEVANALNALSKWPDSPRCRNAAERLAERLADEPGLLQSLRAQEVALLLNALSKWPDDEACRQAAEALAARLAREPGLR 283 (2316)
T ss_pred hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHHHhcCHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHhcChhhh
Q ss_pred CCCChhhHHhHHHhhcCCCChh--------HHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---
Q 044131 307 ERVNSSTIVGLIPVFYPFGHLH--------LTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEK--- 375 (784)
Q Consensus 307 ~~p~~~t~~~ll~~~~~~~~~~--------~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~--- 375 (784)
...|..-+...+.++++..+-+ .+..+..... ..-..+..-....+++++|..+.+.+....+.+..+
T Consensus 284 ~~~~~Q~vAN~LNALSKwp~~~~cr~aa~~LA~rL~~~~~-l~~~~~aQ~vAN~LNALSKWp~~~~c~~Aa~~LA~rL~~ 362 (2316)
T PRK09169 284 LALDPQGVANALNALSKWPDTEACRQAAEALAERLAQERG-LLQAMNAQAVANALNALSKWPDEEACRAAAEALAARLAR 362 (2316)
T ss_pred hhcCHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHhChh-hhhhCCHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Q ss_pred --------ChhHHHHHHHHHHhCCChh----HHHHHHHHHHhC---CCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHH-
Q 044131 376 --------SLASWNAMIAGYTQNGLTE----EAISLFQEMQAS---KVAPNPVTVSSILSACAQLGAISLGKWVHELVK- 439 (784)
Q Consensus 376 --------~~~~~~~li~~~~~~g~~~----~A~~l~~~m~~~---g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~- 439 (784)
|..-....+.++++-++.+ -|..+...+... .-..|..-..+.+.+|++.+.-+...+....+.
T Consensus 363 ~~~l~~~~npQelANaLnALSKwp~~~~cr~AA~aLA~rL~~~~~l~~~fnaQ~vANaLnALsKWp~~~~c~~aa~aLA~ 442 (2316)
T PRK09169 363 DAGLRRALNAQELANALNALSKWPDEEACRAAAEALAARLARDAGLRAALNAQGVANALNALSKWPGAEACRQAALALAA 442 (2316)
T ss_pred ChhhhhhCCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHhchhhhhhcChHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q ss_pred ------HcCCCCchhhHhHHHHHHHhcCCHH----HHHHHHhhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044131 440 ------SRNFESNIYVSTALIDMYAKCGNIV----EARELFDLMS-------HKSEVTWNTMISGYGLHGHGLEALQLFS 502 (784)
Q Consensus 440 ------~~g~~~~~~~~~~Li~~y~k~g~~~----~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (784)
...-..+..-....+.+++|.++-+ .|..+...+. .-+..-....+.++++-++.+.+...-+
T Consensus 443 rl~~~a~lr~~fn~QeLaN~LnALsKWp~~~~c~~aa~~LA~rl~~~~~l~~af~~Q~lAN~LnALsKwp~~~~c~~aA~ 522 (2316)
T PRK09169 443 RLAADARLRNALSAQELANALNALSKWPDEAACRRAAEALAARLAGDAELRQALDAQGLANALNALSKWPDSDACRAAAE 522 (2316)
T ss_pred HHhhchhhhhhCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcChhhhhhcChHHHHHHHHHHhcCCccHHHHHHHH
Q ss_pred HH-------HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC------CcchHHHHHHHHHhcCCH----
Q 044131 503 EM-------LHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP------LAEHYACMVDILGRAGQL---- 565 (784)
Q Consensus 503 ~m-------~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~lv~~l~r~g~~---- 565 (784)
.+ -..--.-|..-+.+++.++++-...+.+...-+.+.....-+| +....+..+.+|++-+.-
T Consensus 523 aLA~rla~~~~l~~afnpQ~lAN~LnALSKWP~~~~cr~AA~aLA~~la~~~~l~~~~naQ~LAN~LnALSKWP~~~acr 602 (2316)
T PRK09169 523 ALADRLAQDPALLQAMDAQGLANTLNALSKWPEEPDCRAAAEALAARLARRPDLRSALNAQGLANLLNALSKWPDEDACR 602 (2316)
T ss_pred HHHHHHhcChhhhhhcCHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHhcChhhhhccCHHHHHHHHHHHhhCCCchhHH
Q ss_pred HHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc--------CCCCCcchHHHHHHHHHhcCCh
Q 044131 566 EKALEFIKGLAVEP------GPAVWGALLGACMIHKDTNLARVASEKLFE--------LDPENVGYHVLLSNIYSAERDY 631 (784)
Q Consensus 566 ~eA~~~~~~m~~~p------~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~--------l~p~~~~~~~~l~~~y~~~g~~ 631 (784)
+-|+.+.....-.| |+.-+.++++++.+..+.+....++..+-+ ..--++....++.|.+++-.+-
T Consensus 603 ~Aa~aLA~rla~~~~~~~afn~Q~lAN~LnALSKWP~~~~cr~Aa~aLA~~L~~~~~l~~af~aQ~LaN~LnALSKWp~~ 682 (2316)
T PRK09169 603 AAAEALAGRLARDAGLLDAFNAQDLANLLNGLSKWPDEDDCRQAAEALAARLLRDAGLPRAFDAQGLANALNALSKWPDE 682 (2316)
T ss_pred HHHHHHHHHHHhccccccccCHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcchhHHhcCcHHHHHHHHHHHhCCCc
Q ss_pred HHHHHHHHHHHhC
Q 044131 632 LQAATVRQVVKKR 644 (784)
Q Consensus 632 ~~a~~~~~~m~~~ 644 (784)
+.+.+.-..+.++
T Consensus 683 ~~c~~Aa~aLA~r 695 (2316)
T PRK09169 683 AACRAAALALAER 695 (2316)
T ss_pred HHHHHHHHHHHHH
No 451
>PF11525 CopK: Copper resistance protein K; InterPro: IPR021604 CopK is a periplasmic dimeric protein which is strongly up-regulated in the presence of copper, leading to a high periplasmic accumulation []. CopK has two different binding sites for Cu(I), each with a different affinity for the metal. Binding of the first Cu(I) ion induces a conformational change of CopK which involves dissociation of the dimeric apo-protein. Binding of a second Cu(I) further increases the plasticity of the protein. CopK has features that are common with functionally related proteins such as a structure consisting of an all-beta fold and a methionine-rich Cu(I) binding site []. ; PDB: 3N7E_B 3N7D_B 3DSP_A 3DSO_A 2K0Q_A 2KM0_A 2LEL_A.
Probab=28.51 E-value=19 Score=27.15 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=15.7
Q ss_pred ceEEEecCCccccccCCcCC
Q 044131 760 RVIVVRDANRFHHFKGGVCS 779 (784)
Q Consensus 760 r~i~~rd~~rfh~f~~g~cs 779 (784)
..|=+.|.+-.|+||||+-+
T Consensus 8 ksi~LkDGstvyiFKDGKMa 27 (73)
T PF11525_consen 8 KSIPLKDGSTVYIFKDGKMA 27 (73)
T ss_dssp EEEEBTTSEEEEEETTS-EE
T ss_pred eeEecCCCCEEEEEcCCcee
Confidence 45678899999999999854
No 452
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=28.37 E-value=2.1e+02 Score=20.10 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=21.3
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044131 489 GLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLY 521 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 521 (784)
.+.|-..++..++++|.+.|+.-+...+..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345666677777777777777666666655543
No 453
>PF05119 Terminase_4: Phage terminase, small subunit; InterPro: IPR006448 This entry is represented by Streptococcus phage 7201, Orf21. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This group of sequences describe the distinct family of phage (and integrated prophage) putative terminase small subunit sequnces. Members tend to be encoded by the gene adjacent to the phage terminase large subunit gene.
Probab=28.04 E-value=1.4e+02 Score=24.62 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=29.4
Q ss_pred CCCCcchHHHHHHHHHHHHHHHHcCcccCCCcccccc
Q 044131 668 DQLHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDV 704 (784)
Q Consensus 668 d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~ 704 (784)
-..||....+......+.....+.|..|....-+-..
T Consensus 57 ~~~nP~~~~~~~~~~~~~~l~~~lGLtP~sR~kl~~~ 93 (100)
T PF05119_consen 57 PKKNPAVSILNKAMKQMRSLASELGLTPASRAKLAVP 93 (100)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcCCCHHHHhhccCC
Confidence 4689999888888888888889999999876654433
No 454
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=27.90 E-value=3e+02 Score=30.34 Aligned_cols=87 Identities=11% Similarity=0.193 Sum_probs=58.8
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--------CCcchHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDP--------ENVGYHVL 620 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p--------~~~~~~~~ 620 (784)
+..|-.++.-|+..+++++|.++.+-.. +...|.+|.+....+.+...++.+|-.+.+.+. +-++--..
T Consensus 573 V~py~~iL~e~~sssKWeqavRLCrfv~---eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~ltske~~ 649 (737)
T KOG1524|consen 573 VNPYPEILHEYLSSSKWEQAVRLCRFVQ---EQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKALTSKEEQ 649 (737)
T ss_pred ccccHHHHHHHhccchHHHHHHHHHhcc---chHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhccCcHHHH
Confidence 4556677777888888999988877543 566788888888888888888888777766542 11222334
Q ss_pred HHHHHHhcCChHHHHHHH
Q 044131 621 LSNIYSAERDYLQAATVR 638 (784)
Q Consensus 621 l~~~y~~~g~~~~a~~~~ 638 (784)
++....-.|+..||.-+.
T Consensus 650 mA~~~l~~G~~~eAe~iL 667 (737)
T KOG1524|consen 650 MAENSLMLGRMLEAETIL 667 (737)
T ss_pred HHHHHHHhccchhhhHHH
Confidence 555555566666666554
No 455
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=27.60 E-value=2.5e+02 Score=24.65 Aligned_cols=41 Identities=24% Similarity=0.188 Sum_probs=34.0
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 044131 572 IKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDP 612 (784)
Q Consensus 572 ~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p 612 (784)
+-.+.+-|++.+..+-|.||++-+|+..|.++++-+-..-+
T Consensus 75 l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g 115 (149)
T KOG4077|consen 75 LFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG 115 (149)
T ss_pred hhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc
Confidence 33456789999999999999999999999999998764433
No 456
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=27.04 E-value=5.6e+02 Score=24.44 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=30.1
Q ss_pred HHhcCCHHHHHHHHhhcCC------CCHHHHHHHHH-HHHHcCC--HHHHHHHHHHHHHC
Q 044131 457 YAKCGNIVEARELFDLMSH------KSEVTWNTMIS-GYGLHGH--GLEALQLFSEMLHS 507 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~~------~~~~~~~~li~-~~~~~g~--~~~A~~~~~~m~~~ 507 (784)
....|++++|..-++++.+ +-...|+.+.. +|+.++. +-+|.-+|.-....
T Consensus 39 ~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~~~ 98 (204)
T COG2178 39 LLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILKDG 98 (204)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHhcC
Confidence 3455667777766666542 23445666665 6777665 44666666655544
No 457
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.75 E-value=1.2e+03 Score=28.18 Aligned_cols=27 Identities=22% Similarity=0.576 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHh
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQA 405 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~ 405 (784)
-|..|+.-|...|..++|++++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 478889999999999999999998876
No 458
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=26.48 E-value=40 Score=26.76 Aligned_cols=41 Identities=17% Similarity=0.088 Sum_probs=27.1
Q ss_pred cCCHHHHHHHHHHHhcC------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 594 HKDTNLARVASEKLFEL------DPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 594 ~g~~~~a~~~~~~~~~l------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.|+.+.|...|++.++. -|.. .....-.|++|.+++.+|++
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~eg~ai~~~---------~~~~~~~w~~ar~~~~Km~~ 67 (79)
T cd02679 21 WGDKEQALAHYRKGLRELEEGIAVPVP---------SAGVGSQWERARRLQQKMKT 67 (79)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCC---------cccccHHHHHHHHHHHHHHH
Confidence 46777777777766541 1211 23455679999999999975
No 459
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=26.41 E-value=2.4e+02 Score=25.40 Aligned_cols=48 Identities=25% Similarity=0.166 Sum_probs=28.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044131 482 NTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLV 529 (784)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 529 (784)
..++..+.++++.-.|.++++++.+.+...+..|....|..+...|.+
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 345555555555566677777777666555666666666665555543
No 460
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=26.22 E-value=7e+02 Score=25.28 Aligned_cols=181 Identities=12% Similarity=-0.039 Sum_probs=0.0
Q ss_pred CCHHHHHHHHhhcCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHH
Q 044131 461 GNIVEARELFDLMSH-----KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSH----AGLVRE 531 (784)
Q Consensus 461 g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~ 531 (784)
+.+..|...+..... .....-.....+.....+..+|.+.|..+.+.| +......|...+.. ..+..+
T Consensus 55 ~~~~~a~~~~~~a~~~~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~ 131 (292)
T COG0790 55 PDYAKALKSYEKAAELGDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVK 131 (292)
T ss_pred ccHHHHHHHHHHhhhcCChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHH
Q ss_pred HHHHHHHhHHhcCCCCCcchHHHHHHHHHhcC-------CHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHH
Q 044131 532 GDEIFQSMIHDHGFKPLAEHYACMVDILGRAG-------QLEKALEFIKGLAVEPGPAVWGALLGAC----MIHKDTNLA 600 (784)
Q Consensus 532 a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g-------~~~eA~~~~~~m~~~p~~~~~~~ll~a~----~~~g~~~~a 600 (784)
|..+|+...+. |..+.......+...|..-+ +...|..++.++-..-+......|...+ -...|.++|
T Consensus 132 A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A 210 (292)
T COG0790 132 ALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKA 210 (292)
T ss_pred HHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHH
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcC---------------ChHHHHHHHHHHHhCCCcc
Q 044131 601 RVASEKLFELDPENVGYHVLLSNIYSAER---------------DYLQAATVRQVVKKRKLAK 648 (784)
Q Consensus 601 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g---------------~~~~a~~~~~~m~~~~~~k 648 (784)
...++++-+... ......++ ++...| ++..|...+......+...
T Consensus 211 ~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 270 (292)
T COG0790 211 FRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFDN 270 (292)
T ss_pred HHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCChh
No 461
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=26.09 E-value=1.4e+02 Score=31.75 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=22.9
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 044131 591 CMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAAT 636 (784)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~ 636 (784)
|...++.+.|.....+-+-++|...-.+..-+-++....+|.+|.+
T Consensus 238 YL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 238 YLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred hhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555554444444444444455554443
No 462
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.02 E-value=6.7e+02 Score=28.28 Aligned_cols=104 Identities=17% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHccCCHHHHHHHHHHhHHhcCC----------CCCcchHHHHHHHHHhcCCHHHHHHHHHhC---------C-CCCC--
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGF----------KPLAEHYACMVDILGRAGQLEKALEFIKGL---------A-VEPG-- 580 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~----------~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m---------~-~~p~-- 580 (784)
+.|...++++..-|......+.. +-.+.+.-.|.+++-..|+.+-|-+++++. | +.|.
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg 327 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSG 327 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccc
Q ss_pred --------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-CcchHHHHHHHHH
Q 044131 581 --------------PAVWGALLGACMIHKDTNLARVASEKLFELDPE-NVGYHVLLSNIYS 626 (784)
Q Consensus 581 --------------~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~-~~~~~~~l~~~y~ 626 (784)
-.+.-..+....+.|=+.-|.+..+-++.++|. ||-.-..+.++|+
T Consensus 328 ~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 328 NCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred cccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
No 463
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=25.82 E-value=2e+02 Score=26.74 Aligned_cols=39 Identities=8% Similarity=-0.012 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHH
Q 044131 527 GLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLE 566 (784)
Q Consensus 527 g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~ 566 (784)
+..-.|.++++.+.+. +..++..+.---++.|.+.|-+.
T Consensus 39 ~~hlSa~eI~~~L~~~-~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 39 PGAISAYDLLDLLREA-EPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred CCCCCHHHHHHHHHhh-CCCCCcchHHHHHHHHHHCCCEE
Confidence 3344455555555433 33334333333445555555544
No 464
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=25.61 E-value=3e+02 Score=22.15 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 044131 433 WVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEA 497 (784)
Q Consensus 433 ~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 497 (784)
.++..+.+.|+-.. .-.-...+...+.+.|.++++.++.+...+|.+...++...|+..-|
T Consensus 20 ~v~~~L~~~~Vlt~----~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVFTP----DMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCCCH----HHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 45556665553222 22222334556778888888888888888888888888887765544
No 465
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=25.52 E-value=1.2e+03 Score=27.76 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=24.7
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCCC--ChhHHHHH-HHHHHhC
Q 044131 351 ALSTVYSRLNEMEAARKLFDESSEK--SLASWNAM-IAGYTQN 390 (784)
Q Consensus 351 ~Li~~y~~~g~~~~A~~~f~~~~~~--~~~~~~~l-i~~~~~~ 390 (784)
.++....+||+++.|.....+-..- -...|-.. ..+|..+
T Consensus 330 ~~vyy~lR~G~lk~A~~~l~e~~~~~~~l~~~f~~y~~A~~~~ 372 (835)
T KOG2168|consen 330 PLVYYLLRCGDLKAASQFLNENKDFFEKLAELFPTYFNAYAKN 372 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhcC
Confidence 4556667888888888888776542 12233332 5666655
No 466
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=25.43 E-value=55 Score=35.33 Aligned_cols=85 Identities=21% Similarity=0.361 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHcCcccCCCccccccchHHHHhhhhhHHHHHHHHHhh----ccCCCCCeEEEEeccccCCcccchhhhhh
Q 044131 680 MLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGL----IATEPGTEIRIIKNLRVCLDCHTATKFIS 755 (784)
Q Consensus 680 ~l~~l~~~~~~~g~~~~~~~~~~~~~~~~k~~~~~~hse~la~~~~l----~~~~~~~~~~~~kn~r~c~dch~~~k~~s 755 (784)
..++....+.+.||.|-.-.+......|.....+..+-.+ ..+||. ++-.+..|+.++=-+--|.+ +.++| ||
T Consensus 277 ~~~kvr~~ld~~G~~~~~Ii~Sdg~lde~~i~~l~~~g~~-~d~FGvGT~L~~~~~~~~~~~v~Klvev~g-~p~~K-is 353 (405)
T COG1488 277 LSEKVRAHLDKLGYDPVKIIVSDGLLDEKIIALLRAFGAR-NDAFGVGTNLTTAKPRPPLDIVYKLVEVNG-KPVAK-IS 353 (405)
T ss_pred HHHHHHHHHHHcCCCceEEEEeCCcchHHHHHHHHHhCCC-ccEeccchhhccCCCCCcceeEEEEEEECC-cccee-ec
Confidence 4455677888899999444455466677777777776666 888884 44455556766554444554 88999 78
Q ss_pred hhcCceEEEecC
Q 044131 756 KVTGRVIVVRDA 767 (784)
Q Consensus 756 ~~~~r~i~~rd~ 767 (784)
+--|+.-+.|..
T Consensus 354 ~~Pgkk~~~r~~ 365 (405)
T COG1488 354 KNPGKKQVYRSA 365 (405)
T ss_pred CCCccceeecch
Confidence 889999988876
No 467
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=25.38 E-value=4e+02 Score=23.43 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=43.2
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHH
Q 044131 498 LQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVD 557 (784)
Q Consensus 498 ~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 557 (784)
.+-++....-.+-|++......|.||.+.+++..|..+|+.+.. ...+....|..+++
T Consensus 69 rkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 69 RKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHHH
Confidence 34445555566889999999999999999999999999998864 33444445666553
No 468
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=25.19 E-value=7.1e+02 Score=25.03 Aligned_cols=238 Identities=16% Similarity=0.165 Sum_probs=141.4
Q ss_pred cCCHHHHHHHHhhcCCC-------ChhHHHHHHHHHHhCCChhHHHHHHHHHHhC---CC--CCCHHHHHHHHHHHhhhC
Q 044131 359 LNEMEAARKLFDESSEK-------SLASWNAMIAGYTQNGLTEEAISLFQEMQAS---KV--APNPVTVSSILSACAQLG 426 (784)
Q Consensus 359 ~g~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~--~pd~~t~~~ll~a~~~~~ 426 (784)
....++|..-|++..+- ..-+.-.||..+.+.|++++.++.|.+|..- .+ .-+..+.++++.-.+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 44677777777765421 2234556888899999999999999888641 11 224566778887777666
Q ss_pred chHHHHHHHHHHHHc-----CCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--------CC-------HHHHHHHHH
Q 044131 427 AISLGKWVHELVKSR-----NFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--------KS-------EVTWNTMIS 486 (784)
Q Consensus 427 ~~~~a~~i~~~~~~~-----g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--------~~-------~~~~~~li~ 486 (784)
+.+.-..+++.-.+. +-..--.+-+-|...|...|.+..-.+++.++.. .| ...|..=|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 666665555543321 1111223345677778888888888888776641 11 235666677
Q ss_pred HHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH-----ccCCHHHHHHHHHHhHHhcCCCCCcc-----hHHHH
Q 044131 487 GYGLHGHGLEALQLFSEMLHSG-IRPSGVTFLSVLYACS-----HAGLVREGDEIFQSMIHDHGFKPLAE-----HYACM 555 (784)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g-~~pd~~t~~~ll~a~~-----~~g~~~~a~~~~~~m~~~~~~~p~~~-----~~~~l 555 (784)
.|....+-..-..+|++.+.-. --|-+ ....++.-|. +.|.+++|..-|-+..+.|.-.-++. -|-.+
T Consensus 200 mYT~qKnNKkLK~lYeqalhiKSAIPHP-lImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL 278 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQALHIKSAIPHP-LIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL 278 (440)
T ss_pred hhhhhcccHHHHHHHHHHHHhhccCCch-HHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence 7887788777788888776532 22333 3445666664 46778877654444444443222222 24556
Q ss_pred HHHHHhcC----CHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 044131 556 VDILGRAG----QLEKALEFIKGLAV--EPGPAVWGALLGACMIHKDTNLARVAS 604 (784)
Q Consensus 556 v~~l~r~g----~~~eA~~~~~~m~~--~p~~~~~~~ll~a~~~~g~~~~a~~~~ 604 (784)
..++.++| +-+||. |. .|.......|+.||.. +++.+-+++.
T Consensus 279 ANMLmkS~iNPFDsQEAK------PyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il 326 (440)
T KOG1464|consen 279 ANMLMKSGINPFDSQEAK------PYKNDPEILAMTNLVAAYQN-NDIIEFERIL 326 (440)
T ss_pred HHHHHHcCCCCCcccccC------CCCCCHHHHHHHHHHHHHhc-ccHHHHHHHH
Confidence 67777766 222221 33 3455577888888764 3444444433
No 469
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=25.04 E-value=1.1e+03 Score=27.02 Aligned_cols=55 Identities=13% Similarity=0.089 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCC-hhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 044131 348 VLTALSTVYSRLNEMEAARKLFDESSEKS-LASWNAMIAGYTQNGLTEEAISLFQEMQ 404 (784)
Q Consensus 348 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 404 (784)
.++.|+..... =+.++-.++++++.. . ...|..++++....|-.....-+.+.+.
T Consensus 312 ~f~~lv~~lR~-~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~ 367 (574)
T smart00638 312 KFLRLVRLLRT-LSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIK 367 (574)
T ss_pred HHHHHHHHHHh-CCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34444444322 234444555554443 2 4566777777777765443333333333
No 470
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=24.73 E-value=1.5e+02 Score=29.85 Aligned_cols=56 Identities=23% Similarity=0.125 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 044131 585 GALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 585 ~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~ 640 (784)
..+=+++...++++.|.+..++++.++|+++.-..--+-+|++.|...-|..-...
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~ 240 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSY 240 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHH
Confidence 34445778889999999999999999999998888889999999998888877665
No 471
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=24.69 E-value=6.1e+02 Score=28.45 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=35.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCC--hh---HHHHHHHHHHhCCChhHHHHHHHHHHh
Q 044131 350 TALSTVYSRLNEMEAARKLFDESSEKS--LA---SWNAMIAGYTQNGLTEEAISLFQEMQA 405 (784)
Q Consensus 350 ~~Li~~y~~~g~~~~A~~~f~~~~~~~--~~---~~~~li~~~~~~g~~~~A~~l~~~m~~ 405 (784)
..|+.-|.+++++++|..++..|.-.. .. +.+.+.+.+.+..-.++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 457778999999999999999987432 22 333444455555444555555555544
No 472
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=24.49 E-value=4.8e+02 Score=22.76 Aligned_cols=58 Identities=10% Similarity=0.000 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh-------cCCCCCcchHH----HHHHHHHhcCChHHHHHHHHH
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLF-------ELDPENVGYHV----LLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~-------~l~p~~~~~~~----~l~~~y~~~g~~~~a~~~~~~ 640 (784)
.+..|-.|+...|+++++...+++++ +++.+....|+ .-+-.+...|+.+||.+-++.
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 34444455555555555444444433 45555444333 344567778999999988864
No 473
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=24.08 E-value=1.3e+02 Score=25.76 Aligned_cols=73 Identities=21% Similarity=0.334 Sum_probs=50.4
Q ss_pred cEEEECCEEEEEEeCCC-CCcchHHHHHHHHHHHHHHHHcCcccCCCccccccchHHHHhhhhhHHHHHHHHHhhccCCC
Q 044131 653 TLIEVGGTPHVFTSGDQ-LHPQSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFGLIATEP 731 (784)
Q Consensus 653 s~i~~~~~~~~f~~~d~-~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~k~~~~~~hse~la~~~~l~~~~~ 731 (784)
.|++.+|.+-.+...+. .+|...++...++++..++.. ...++.-|++++ ..||-.|++-+.|
T Consensus 22 ~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~-----~v~f~kVdid~~----------~~la~~f~V~sIP- 85 (111)
T cd02965 22 DWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG-----RFRAAVVGRADE----------QALAARFGVLRTP- 85 (111)
T ss_pred HHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC-----cEEEEEEECCCC----------HHHHHHcCCCcCC-
Confidence 45566666666767765 789999999999888776432 123344555553 3588889999999
Q ss_pred CCeEEEEecccc
Q 044131 732 GTEIRIIKNLRV 743 (784)
Q Consensus 732 ~~~~~~~kn~r~ 743 (784)
++.++||=++
T Consensus 86 --Tli~fkdGk~ 95 (111)
T cd02965 86 --ALLFFRDGRY 95 (111)
T ss_pred --EEEEEECCEE
Confidence 7788887543
No 474
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=24.03 E-value=9.1e+02 Score=25.88 Aligned_cols=52 Identities=13% Similarity=-0.025 Sum_probs=30.7
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----c--cCCHHHHHHHHHH
Q 044131 487 GYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACS----H--AGLVREGDEIFQS 538 (784)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~----~--~g~~~~a~~~~~~ 538 (784)
.+...+++..|.++|+++.+...+|+..++...+..++ . .-+.++|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 34456788888888888888766665544333332222 1 3445566666653
No 475
>PRK14700 recombination factor protein RarA; Provisional
Probab=24.01 E-value=7e+02 Score=25.66 Aligned_cols=48 Identities=15% Similarity=0.237 Sum_probs=37.3
Q ss_pred HHHHHHHHHHh---CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhC
Q 044131 379 SWNAMIAGYTQ---NGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLG 426 (784)
Q Consensus 379 ~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 426 (784)
.+.-+|+++.+ ..+++.|+-.+-+|.+.|..|..+.-..++-++-..|
T Consensus 125 ~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIG 175 (300)
T PRK14700 125 EFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIG 175 (300)
T ss_pred hhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34445666654 5789999999999999999998887777777776666
No 476
>COG4890 Predicted outer membrane lipoprotein [Function unknown]
Probab=23.93 E-value=38 Score=21.51 Aligned_cols=12 Identities=50% Similarity=0.653 Sum_probs=9.2
Q ss_pred HHHHHHHhhccC
Q 044131 718 EKLAIAFGLIAT 729 (784)
Q Consensus 718 e~la~~~~l~~~ 729 (784)
--||-|||+|+.
T Consensus 10 ~lLAcAFgiinA 21 (37)
T COG4890 10 LLLACAFGIINA 21 (37)
T ss_pred HHHHHHHHHHHH
Confidence 358899999863
No 477
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=23.27 E-value=4.8e+02 Score=22.80 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHcCCCCc-hhhHhHHHHHHHhcCCHHHHHHHHhh
Q 044131 430 LGKWVHELVKSRNFESN-IYVSTALIDMYAKCGNIVEARELFDL 472 (784)
Q Consensus 430 ~a~~i~~~~~~~g~~~~-~~~~~~Li~~y~k~g~~~~A~~~f~~ 472 (784)
.+.+++..|...|+-.. ...|..-...+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66777777777665443 45566677777777888888777753
No 478
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=23.09 E-value=1.2e+03 Score=26.75 Aligned_cols=59 Identities=14% Similarity=0.225 Sum_probs=30.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHH
Q 044131 380 WNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKS 440 (784)
Q Consensus 380 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~ 440 (784)
|..-+.-+...++.. ....+++...-.-.+.....-++..|.+.|-.+.+..+.+.+-.
T Consensus 375 W~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~ 433 (566)
T PF07575_consen 375 WQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQ 433 (566)
T ss_dssp HHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444444444333222 44444444433334556667778888888888877777776544
No 479
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=22.55 E-value=52 Score=35.31 Aligned_cols=147 Identities=18% Similarity=0.216 Sum_probs=0.0
Q ss_pred CCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCC----ChHHHHHHhccCCCCC-----
Q 044131 103 ALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFS----WVKSARKVFDKMPEKD----- 173 (784)
Q Consensus 103 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g----~~~~A~~~f~~~~~~~----- 173 (784)
++.||.++|.+=..+--+......|+..++.++ ||...... +.+-..- .-..-+++|+.+.-.|
T Consensus 410 ~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLI-----Pd~~~~~~--n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e 482 (650)
T KOG4334|consen 410 GVLPDLFPYGSGVGASKKTAKLVAARDTLEILI-----PDLRVSED--NVCDGKVEEDGKQQGFLELFKKIKIEDPRVVE 482 (650)
T ss_pred cccccccccccccccchHHHHHHHHHHHHHHhc-----chhhhccc--ccccccccccccchhHHHHhhcccccCchHHH
Q ss_pred -------cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchh
Q 044131 174 -------TVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVY 246 (784)
Q Consensus 174 -------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~ 246 (784)
...||.|..++.++-.+. -+.+=.+|...+.-+........=..+-+...+..+|+|+-.+.+-.-+.|...
T Consensus 483 ~ctk~~~psPy~iL~~cl~Rn~g~~-d~~ik~E~i~~~nqkse~im~~Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~ 561 (650)
T KOG4334|consen 483 MCTKCAIPSPYNILRDCLSRNLGWN-DLVIKKEMIGNGNQKSEVIMILGKHTEEAECKNKRQGKQLASQRILQKLHPHLL 561 (650)
T ss_pred HhhhcCCCCHHHHHHHHHHhhcCCc-ceeeeeeccCCCCccceeEeeeccceeeeeeechhHHHHHHHHHHHHHhCHHhh
Q ss_pred HHHHHHHHHHh
Q 044131 247 VLTGLVSFYSK 257 (784)
Q Consensus 247 ~~~~li~~y~~ 257 (784)
+|.+|+.+|.+
T Consensus 562 twGSlLriYGr 572 (650)
T KOG4334|consen 562 TWGSLLRIYGR 572 (650)
T ss_pred hHHHHHHHhhh
No 480
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.29 E-value=7e+02 Score=23.91 Aligned_cols=87 Identities=11% Similarity=0.002 Sum_probs=48.7
Q ss_pred HhhhCchHHHHHHHHHHHHcCCCCc--hhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHH--HHHHHHHHcCCHHHH
Q 044131 422 CAQLGAISLGKWVHELVKSRNFESN--IYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWN--TMISGYGLHGHGLEA 497 (784)
Q Consensus 422 ~~~~~~~~~a~~i~~~~~~~g~~~~--~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~--~li~~~~~~g~~~~A 497 (784)
....++++.|...+.......-+.+ ..+---|.......|..|+|...++....++-.+-- .-...+...|+-++|
T Consensus 99 ~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~A 178 (207)
T COG2976 99 EVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEA 178 (207)
T ss_pred HHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHH
Confidence 4455666666666665553321111 111123444556677777777777776655433322 223456777777777
Q ss_pred HHHHHHHHHCC
Q 044131 498 LQLFSEMLHSG 508 (784)
Q Consensus 498 ~~~~~~m~~~g 508 (784)
..-|++.++.+
T Consensus 179 r~ay~kAl~~~ 189 (207)
T COG2976 179 RAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHcc
Confidence 77777777754
No 481
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=22.26 E-value=4.2e+02 Score=23.86 Aligned_cols=46 Identities=17% Similarity=0.122 Sum_probs=30.5
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhC
Q 044131 381 NAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLG 426 (784)
Q Consensus 381 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~ 426 (784)
-.++..+.+.++.-.|.++++++...+...+..|.-..|..+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3455566666666777777777777776666666666666665555
No 482
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=22.26 E-value=97 Score=24.50 Aligned_cols=27 Identities=22% Similarity=0.449 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHHHHcCcccCCCcc
Q 044131 674 STAIYAMLEKLNGKMREAGFQTETVTA 700 (784)
Q Consensus 674 ~~~i~~~l~~l~~~~~~~g~~~~~~~~ 700 (784)
..+|...+++...+++..||.||.-.+
T Consensus 7 li~il~~ie~~inELk~dG~ePDivL~ 33 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIVLV 33 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EEEE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEE
Confidence 356777888888999999999998654
No 483
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=22.02 E-value=1.8e+02 Score=28.43 Aligned_cols=54 Identities=19% Similarity=0.115 Sum_probs=48.5
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~ 645 (784)
...+|.+.+-+++.+++++-|+....+..++...-++|+.+.|.+.++...+..
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 457899999999999999999999999999999999999999999988776543
No 484
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=21.83 E-value=2.5e+02 Score=32.12 Aligned_cols=24 Identities=0% Similarity=-0.043 Sum_probs=16.8
Q ss_pred cchHHHHHHHHhcCCCchhHHHHHHH
Q 044131 72 LFLFNVIIRGFSNNEMPKSSICFYTH 97 (784)
Q Consensus 72 ~~~~~~li~~~~~~g~~~~a~~~~~~ 97 (784)
..-|+ .+..+.-.|.+++|.+ +++
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~-lL~ 172 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQ-LLR 172 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHH-HH-
T ss_pred hhHHH-HHHHHHHcCCHHHHHH-HHH
Confidence 44576 6778888899999988 663
No 485
>PRK10220 hypothetical protein; Provisional
Probab=21.73 E-value=50 Score=27.67 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=19.2
Q ss_pred eccccCCcc-cchhhhhhhhcCceEEEecCCc
Q 044131 739 KNLRVCLDC-HTATKFISKVTGRVIVVRDANR 769 (784)
Q Consensus 739 kn~r~c~dc-h~~~k~~s~~~~r~i~~rd~~r 769 (784)
-++-||.+| |+|..--.....-.+++||+|-
T Consensus 18 ~~~~vCpeC~hEW~~~~~~~~~~~~~vkDsnG 49 (111)
T PRK10220 18 NGMYICPECAHEWNDAEPAQESDELIVKDANG 49 (111)
T ss_pred CCeEECCcccCcCCccccccccCCceEEcCCC
Confidence 457899999 7776543222223367899874
No 486
>PF00322 Endothelin: Endothelin family; InterPro: IPR001928 Endothelins (ET's) are the most potent vasoconstrictors known [, , ]. They stimulate cardiac contraction, regulate release of vasoactive substances, and stimulate mitogenesis in blood vessels in primary culture. They also stimulate contraction in almost all other smooth muscles (e.g., uterus, bronchus, vas deferensa and stomach) and stimulate secretion in several tissues (e.g., kidney, liver and adrenals). Endothelin receptors have also been found in the brain, e.g. cerebral cortex, cerebellum and glial cells. Endothelins have been implicated in a variety of pathophysiological conditions associated with stress, including hypertension, myocardial infarction, subarachnoid haemorrhage and renal failure. Endothelins are synthesised by proteolysis of large preproendothelins, which are cleaved to 'big endothelins' before being processed to the mature peptide. Sarafotoxins (SRTX) and bibrotoxin (BTX) are cardiotoxins from the venom of snakes of the Atractaspis family, structurally and functionally [, ] similar to endothelin. As shown in the following schematic representation, these peptides which are 21 residues long contain two intramolecular disulphide bonds. +-------------+ | | CxCxxxxxxxCxxxCxxxxxx | | +-------+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0019229 regulation of vasoconstriction, 0005576 extracellular region; PDB: 1V6R_A 1T7H_A 1EDP_A 1EDN_A 3CMH_A 6CMH_A 1SRB_A 2LDF_A.
Probab=21.73 E-value=38 Score=21.06 Aligned_cols=8 Identities=38% Similarity=1.111 Sum_probs=5.0
Q ss_pred CcCCCCCC
Q 044131 776 GVCSCGDY 783 (784)
Q Consensus 776 g~csc~d~ 783 (784)
+.|||.++
T Consensus 4 pRCsC~s~ 11 (31)
T PF00322_consen 4 PRCSCASW 11 (31)
T ss_dssp --ECCSSS
T ss_pred cceecCCC
Confidence 68999875
No 487
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=21.40 E-value=4e+02 Score=30.38 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=12.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 483 TMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
++..+|.++|++..+.++++....
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~ 56 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID 56 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc
Confidence 445555555555555555555443
No 488
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=21.12 E-value=2.5e+02 Score=21.83 Aligned_cols=40 Identities=25% Similarity=0.355 Sum_probs=30.3
Q ss_pred HhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCc
Q 044131 388 TQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGA 427 (784)
Q Consensus 388 ~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 427 (784)
...|+.+.+.+++++....|..|..+....+..+....|.
T Consensus 12 l~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG~ 51 (79)
T PF02607_consen 12 LLAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIGE 51 (79)
T ss_dssp HHTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999988888887777767766655553
No 489
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=20.64 E-value=1.1e+03 Score=25.39 Aligned_cols=67 Identities=9% Similarity=-0.062 Sum_probs=43.8
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHH--hcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 044131 522 ACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILG--RAGQLEKALEFIKGLAVEPGPAVWGALLG 589 (784)
Q Consensus 522 a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~--r~g~~~eA~~~~~~m~~~p~~~~~~~ll~ 589 (784)
...+.+++..|.++|+.+..+ .+.|+ ...|..+..+|. ..-++++|.+.++++....+...|..+..
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r-~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~~~~~~~~~~~~~~~~ 211 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRR-LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLNDPLPERLALYQVTSHD 211 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhc-ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhhccchhhhhhhhhhhh
Confidence 456778999999999999865 54444 334455555554 56688999999997533334445544443
No 490
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=20.64 E-value=7.5e+02 Score=23.62 Aligned_cols=88 Identities=5% Similarity=0.011 Sum_probs=46.5
Q ss_pred CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhC------------
Q 044131 274 PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSG------------ 341 (784)
Q Consensus 274 ~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g------------ 341 (784)
+-.+.|-....+-++.-..+++-+.|-- ..-.+++-.|.+..++..|+.+++.+-+..
T Consensus 105 k~~vPFceFAetV~k~~q~~e~dK~~LG----------RiGiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~ 174 (233)
T PF14669_consen 105 KPGVPFCEFAETVCKDPQNDEVDKTLLG----------RIGISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGP 174 (233)
T ss_pred cCCCCHHHHHHHHhcCCccchhhhhhhh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCc
Confidence 4445555555555555444443332211 112345555666667777777766665432
Q ss_pred --CCcchHHHHHHHHHHHhcCCHHHHHHHHhh
Q 044131 342 --IVSNSSVLTALSTVYSRLNEMEAARKLFDE 371 (784)
Q Consensus 342 --~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~ 371 (784)
..+--.+.|.-...+.++|.+|.|..++++
T Consensus 175 e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 175 EKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred cccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 123334556666666666666666666653
No 491
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=20.30 E-value=4.8e+02 Score=26.77 Aligned_cols=52 Identities=10% Similarity=0.172 Sum_probs=32.7
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHh
Q 044131 352 LSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQA 405 (784)
Q Consensus 352 Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 405 (784)
++..+.+...+......+..+. .+..-...+..+...|++..|+++..+.+.
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~ 155 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQ 155 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4444555555555555444442 333445567777889999999998888765
Done!