Query 044131
Match_columns 784
No_of_seqs 926 out of 5087
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 20:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044131.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044131hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 7E-43 2.4E-47 402.4 35.4 523 22-627 36-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 6.7E-42 2.3E-46 394.1 40.4 480 152-643 62-578 (597)
3 4g26_A Pentatricopeptide repea 99.9 1.2E-26 4.3E-31 256.7 21.4 184 378-562 27-223 (501)
4 1w3b_A UDP-N-acetylglucosamine 99.9 1.1E-23 3.7E-28 228.2 40.8 372 217-630 6-388 (388)
5 4g26_A Pentatricopeptide repea 99.9 1.9E-26 6.6E-31 255.2 17.7 206 95-323 12-222 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 3.7E-23 1.3E-27 224.0 41.5 349 284-643 7-367 (388)
7 2y4t_A DNAJ homolog subfamily 99.9 2.7E-22 9.3E-27 221.7 29.8 335 244-643 25-405 (450)
8 2gw1_A Mitochondrial precursor 99.9 1.9E-21 6.7E-26 218.5 33.4 428 176-621 8-489 (514)
9 2gw1_A Mitochondrial precursor 99.9 8.5E-21 2.9E-25 213.3 30.6 424 212-643 8-477 (514)
10 3fp2_A TPR repeat-containing p 99.9 1.1E-19 3.9E-24 205.4 34.4 419 174-643 25-490 (537)
11 2y4t_A DNAJ homolog subfamily 99.9 3.6E-19 1.2E-23 196.6 33.3 295 343-643 23-357 (450)
12 3fp2_A TPR repeat-containing p 99.8 1.3E-18 4.6E-23 196.6 33.1 435 147-620 29-501 (537)
13 3ieg_A DNAJ homolog subfamily 99.8 1.5E-16 5.1E-21 169.2 36.1 291 347-643 4-334 (359)
14 3ieg_A DNAJ homolog subfamily 99.8 1E-16 3.6E-21 170.4 33.0 307 277-627 4-352 (359)
15 1xi4_A Clathrin heavy chain; a 99.8 2.2E-14 7.7E-19 167.5 53.7 551 37-637 721-1377(1630)
16 1b89_A Protein (clathrin heavy 99.8 1.9E-17 6.6E-22 174.5 23.0 223 52-305 14-236 (449)
17 1b89_A Protein (clathrin heavy 99.8 2.2E-17 7.4E-22 174.2 22.1 323 256-613 14-344 (449)
18 3hym_B Cell division cycle pro 99.8 2E-16 6.7E-21 166.3 28.9 287 342-631 18-321 (330)
19 1xi4_A Clathrin heavy chain; a 99.7 3.7E-13 1.3E-17 157.4 52.7 471 38-573 870-1379(1630)
20 2ooe_A Cleavage stimulation fa 99.7 5.3E-15 1.8E-19 166.9 36.5 127 173-304 12-158 (530)
21 2xm6_A Protein corresponding t 99.7 8.7E-15 3E-19 163.4 37.1 365 244-627 38-452 (490)
22 3hym_B Cell division cycle pro 99.7 9.4E-16 3.2E-20 161.0 27.2 263 375-643 20-298 (330)
23 2ooe_A Cleavage stimulation fa 99.7 2.9E-14 9.9E-19 160.8 38.7 392 210-643 13-491 (530)
24 1fch_A Peroxisomal targeting s 99.7 6.4E-16 2.2E-20 165.3 23.4 279 356-639 35-354 (368)
25 2xm6_A Protein corresponding t 99.7 3E-13 1E-17 150.8 39.9 351 274-645 37-433 (490)
26 3mkr_A Coatomer subunit epsilo 99.7 7.9E-14 2.7E-18 143.7 32.2 245 356-642 9-262 (291)
27 4eqf_A PEX5-related protein; a 99.7 2.5E-15 8.7E-20 160.7 21.6 259 376-639 64-351 (365)
28 1fch_A Peroxisomal targeting s 99.7 7.7E-15 2.6E-19 156.9 25.3 281 256-608 36-357 (368)
29 4eqf_A PEX5-related protein; a 99.7 1.9E-15 6.6E-20 161.6 18.5 230 411-643 64-309 (365)
30 4g1t_A Interferon-induced prot 99.7 6.2E-14 2.1E-18 155.5 31.2 369 244-655 50-470 (472)
31 3cv0_A Peroxisome targeting si 99.6 7.3E-15 2.5E-19 154.0 21.4 253 381-639 25-310 (327)
32 3spa_A Mtrpol, DNA-directed RN 99.6 2.4E-16 8.3E-21 178.5 8.9 131 443-574 123-261 (1134)
33 3cv0_A Peroxisome targeting si 99.6 1.7E-13 5.7E-18 143.5 25.3 226 275-540 20-267 (327)
34 3spa_A Mtrpol, DNA-directed RN 99.6 7.8E-16 2.7E-20 174.5 7.3 159 378-573 128-305 (1134)
35 3mkr_A Coatomer subunit epsilo 99.6 2.5E-13 8.6E-18 139.9 25.5 224 249-514 38-269 (291)
36 4g1t_A Interferon-induced prot 99.6 2.2E-13 7.5E-18 151.1 26.0 381 209-622 50-471 (472)
37 2pl2_A Hypothetical conserved 99.5 1.7E-13 5.8E-18 134.7 17.5 194 444-641 2-211 (217)
38 3uq3_A Heat shock protein STI1 99.5 5.2E-13 1.8E-17 134.4 21.1 216 379-643 7-235 (258)
39 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.6E-12 5.5E-17 132.4 22.7 240 390-638 18-269 (275)
40 3uq3_A Heat shock protein STI1 99.5 1.2E-12 4E-17 131.8 20.3 235 345-623 4-255 (258)
41 3u4t_A TPR repeat-containing p 99.5 1.5E-12 5E-17 132.5 18.4 253 348-629 5-269 (272)
42 2ho1_A Type 4 fimbrial biogene 99.4 8.2E-12 2.8E-16 125.4 22.2 195 447-643 37-237 (252)
43 2h6f_A Protein farnesyltransfe 99.4 4.2E-12 1.4E-16 135.4 20.6 243 378-627 98-365 (382)
44 3e4b_A ALGK; tetratricopeptide 99.4 5.8E-11 2E-15 130.4 30.0 345 218-645 11-388 (452)
45 2vq2_A PILW, putative fimbrial 99.4 1.2E-11 4.1E-16 121.5 22.0 196 446-643 7-210 (225)
46 2ho1_A Type 4 fimbrial biogene 99.4 3E-11 1E-15 121.3 23.7 205 377-620 37-248 (252)
47 2q7f_A YRRB protein; TPR, prot 99.4 4.2E-12 1.5E-16 126.5 16.7 215 377-627 23-239 (243)
48 1ouv_A Conserved hypothetical 99.4 7.6E-11 2.6E-15 120.1 26.4 226 376-614 5-255 (273)
49 2vq2_A PILW, putative fimbrial 99.4 4E-11 1.4E-15 117.6 22.5 208 376-622 7-223 (225)
50 2pl2_A Hypothetical conserved 99.4 1.9E-11 6.7E-16 119.8 19.6 189 379-574 7-210 (217)
51 1ouv_A Conserved hypothetical 99.4 1.6E-10 5.3E-15 117.8 26.8 223 411-645 5-252 (273)
52 2q7f_A YRRB protein; TPR, prot 99.4 8.3E-12 2.9E-16 124.4 16.6 195 446-643 22-221 (243)
53 3e4b_A ALGK; tetratricopeptide 99.4 3.8E-11 1.3E-15 131.9 23.2 338 117-508 12-388 (452)
54 2h6f_A Protein farnesyltransfe 99.3 5.5E-11 1.9E-15 126.7 22.2 223 413-641 98-344 (382)
55 3u4t_A TPR repeat-containing p 99.3 2.5E-10 8.5E-15 115.9 26.1 226 312-541 4-249 (272)
56 4a1s_A PINS, partner of inscut 99.3 1.2E-11 4E-16 134.3 16.9 259 383-643 54-371 (411)
57 4e6h_A MRNA 3'-END-processing 99.3 3.5E-09 1.2E-13 120.4 37.2 453 127-617 51-577 (679)
58 3sf4_A G-protein-signaling mod 99.3 2.9E-11 9.8E-16 130.6 19.3 263 380-643 12-335 (406)
59 4abn_A Tetratricopeptide repea 99.3 5.3E-12 1.8E-16 139.7 13.4 206 428-639 84-316 (474)
60 3ro2_A PINS homolog, G-protein 99.3 3.8E-11 1.3E-15 125.6 19.0 259 384-643 12-331 (338)
61 1xnf_A Lipoprotein NLPI; TPR, 99.3 3.6E-11 1.2E-15 122.2 17.7 217 423-644 16-244 (275)
62 3vtx_A MAMA; tetratricopeptide 99.3 1.3E-10 4.5E-15 110.4 20.1 163 477-643 4-169 (184)
63 3sf4_A G-protein-signaling mod 99.3 1.9E-11 6.4E-16 132.1 14.8 254 379-632 49-364 (406)
64 2ond_A Cleavage stimulation fa 99.3 7.5E-10 2.6E-14 115.0 24.3 220 394-617 33-277 (308)
65 4a1s_A PINS, partner of inscut 99.2 4.1E-11 1.4E-15 130.0 14.0 265 349-613 51-375 (411)
66 4gyw_A UDP-N-acetylglucosamine 99.2 7.4E-11 2.5E-15 135.9 16.2 161 477-642 8-172 (723)
67 3vtx_A MAMA; tetratricopeptide 99.2 1.9E-10 6.6E-15 109.2 16.4 167 445-615 3-175 (184)
68 4e6h_A MRNA 3'-END-processing 99.2 2.6E-08 8.8E-13 113.3 35.3 225 331-560 329-585 (679)
69 3ro2_A PINS homolog, G-protein 99.2 4.9E-10 1.7E-14 117.0 17.9 275 279-613 8-335 (338)
70 2ond_A Cleavage stimulation fa 99.2 1.8E-09 6.3E-14 112.0 21.3 210 429-644 33-270 (308)
71 3as5_A MAMA; tetratricopeptide 99.2 8.3E-10 2.9E-14 104.3 17.2 158 449-643 10-172 (186)
72 3nf1_A KLC 1, kinesin light ch 99.2 8.4E-11 2.9E-15 121.8 10.9 95 447-541 111-223 (311)
73 3ulq_A Response regulator aspa 99.2 1.4E-09 4.8E-14 116.8 20.8 222 421-643 112-367 (383)
74 3ulq_A Response regulator aspa 99.2 1.1E-09 3.8E-14 117.5 20.0 229 383-611 109-369 (383)
75 3nf1_A KLC 1, kinesin light ch 99.2 7.7E-11 2.6E-15 122.1 10.4 239 377-643 27-306 (311)
76 4i17_A Hypothetical protein; T 99.2 8.8E-10 3E-14 108.7 17.6 150 479-631 8-169 (228)
77 4i17_A Hypothetical protein; T 99.1 1.7E-09 5.6E-14 106.7 18.4 206 410-627 5-226 (228)
78 4abn_A Tetratricopeptide repea 99.1 9.7E-10 3.3E-14 121.5 18.1 177 463-643 84-286 (474)
79 3as5_A MAMA; tetratricopeptide 99.1 2.4E-09 8.4E-14 101.0 18.0 171 412-618 8-181 (186)
80 1hz4_A MALT regulatory protein 99.1 3.8E-08 1.3E-12 104.9 29.1 259 385-643 22-321 (373)
81 3q15_A PSP28, response regulat 99.1 1E-08 3.5E-13 109.7 21.7 221 421-642 110-363 (378)
82 3q15_A PSP28, response regulat 99.0 5.8E-08 2E-12 103.8 25.7 227 383-610 107-365 (378)
83 4gyw_A UDP-N-acetylglucosamine 98.9 3.1E-09 1.1E-13 122.3 12.9 163 445-612 7-176 (723)
84 1qqe_A Vesicular transport pro 98.9 2.8E-08 9.4E-13 102.2 18.3 220 361-617 32-276 (292)
85 3edt_B KLC 2, kinesin light ch 98.9 5.3E-09 1.8E-13 106.2 12.5 164 480-643 87-280 (283)
86 3qky_A Outer membrane assembly 98.9 4.3E-08 1.5E-12 98.8 18.9 204 446-690 14-247 (261)
87 1hz4_A MALT regulatory protein 98.9 4.4E-07 1.5E-11 96.6 27.4 192 349-540 96-320 (373)
88 1qqe_A Vesicular transport pro 98.9 2.7E-08 9.2E-13 102.2 16.2 186 456-641 46-266 (292)
89 3mv2_B Coatomer subunit epsilo 98.9 4.9E-07 1.7E-11 91.4 24.8 173 466-643 85-281 (310)
90 3edt_B KLC 2, kinesin light ch 98.8 9.6E-08 3.3E-12 96.7 17.7 164 447-610 85-281 (283)
91 2pzi_A Probable serine/threoni 98.8 3E-08 1E-12 114.7 15.3 168 458-630 402-583 (681)
92 4ga2_A E3 SUMO-protein ligase 98.8 2.9E-09 1E-13 97.3 5.5 137 489-630 8-149 (150)
93 2fo7_A Synthetic consensus TPR 98.8 1.2E-07 4.1E-12 83.7 15.5 128 480-642 3-130 (136)
94 3qky_A Outer membrane assembly 98.8 1.4E-07 4.7E-12 95.0 17.7 203 410-633 13-250 (261)
95 3qou_A Protein YBBN; thioredox 98.8 8.5E-08 2.9E-12 98.2 16.1 173 463-640 102-280 (287)
96 2yhc_A BAMD, UPF0169 lipoprote 98.8 2.6E-07 8.8E-12 90.7 18.8 180 448-647 5-216 (225)
97 2fo7_A Synthetic consensus TPR 98.8 1.4E-07 4.8E-12 83.2 14.4 95 551-645 3-99 (136)
98 2pzi_A Probable serine/threoni 98.7 2.1E-07 7E-12 107.6 18.1 193 423-622 402-614 (681)
99 3mv2_B Coatomer subunit epsilo 98.7 1.2E-06 3.9E-11 88.7 21.2 240 357-618 24-290 (310)
100 4ga2_A E3 SUMO-protein ligase 98.7 4.2E-08 1.5E-12 89.5 9.4 120 520-642 4-127 (150)
101 2uy1_A Cleavage stimulation fa 98.7 6.7E-06 2.3E-10 90.6 28.5 369 186-608 6-411 (493)
102 2r5s_A Uncharacterized protein 98.6 1.7E-07 5.7E-12 88.1 12.1 155 450-641 9-170 (176)
103 3urz_A Uncharacterized protein 98.6 2.1E-07 7.2E-12 90.1 12.9 126 484-614 60-190 (208)
104 2vsy_A XCC0866; transferase, g 98.6 2.5E-07 8.5E-12 104.8 15.2 159 460-622 2-169 (568)
105 3rjv_A Putative SEL1 repeat pr 98.6 1.7E-06 5.7E-11 84.0 18.9 171 466-645 5-198 (212)
106 2uy1_A Cleavage stimulation fa 98.6 1.7E-05 5.9E-10 87.4 28.9 202 294-506 197-412 (493)
107 3gyz_A Chaperone protein IPGC; 98.6 1.6E-07 5.6E-12 85.4 10.5 100 544-643 30-132 (151)
108 2vsy_A XCC0866; transferase, g 98.6 3.5E-07 1.2E-11 103.6 15.7 146 425-575 2-154 (568)
109 4gco_A Protein STI-1; structur 98.6 2.8E-07 9.7E-12 81.1 11.4 93 550-642 14-108 (126)
110 2vgx_A Chaperone SYCD; alterna 98.6 1.6E-07 5.4E-12 85.4 9.8 100 544-643 15-117 (148)
111 2ifu_A Gamma-SNAP; membrane fu 98.6 2.1E-06 7.3E-11 88.6 18.6 220 390-637 4-254 (307)
112 2c2l_A CHIP, carboxy terminus 98.5 2.1E-07 7E-12 94.9 9.7 192 446-644 3-199 (281)
113 3qou_A Protein YBBN; thioredox 98.5 3.3E-06 1.1E-10 86.2 18.2 160 413-574 118-280 (287)
114 2r5s_A Uncharacterized protein 98.5 8.8E-07 3E-11 83.0 12.4 154 415-574 9-169 (176)
115 1hh8_A P67PHOX, NCF-2, neutrop 98.5 2E-06 6.8E-11 83.2 15.3 122 518-644 11-150 (213)
116 2yhc_A BAMD, UPF0169 lipoprote 98.5 3.1E-06 1.1E-10 82.8 16.5 185 412-617 4-220 (225)
117 4gco_A Protein STI-1; structur 98.5 8.5E-07 2.9E-11 78.0 10.9 107 515-624 15-124 (126)
118 2xcb_A PCRH, regulatory protei 98.5 1.2E-06 4.3E-11 78.7 12.2 99 545-643 13-114 (142)
119 2qfc_A PLCR protein; TPR, HTH, 98.5 3.7E-06 1.3E-10 86.1 17.1 162 480-641 77-263 (293)
120 3dra_A Protein farnesyltransfe 98.4 2.8E-05 9.5E-10 79.3 23.1 219 390-642 46-285 (306)
121 3dra_A Protein farnesyltransfe 98.4 3.9E-05 1.3E-09 78.2 24.2 236 348-623 35-301 (306)
122 3urz_A Uncharacterized protein 98.4 4.1E-06 1.4E-10 80.9 16.1 182 383-589 10-198 (208)
123 3u3w_A Transcriptional activat 98.4 1.1E-05 3.7E-10 82.6 20.0 159 484-642 81-264 (293)
124 1hh8_A P67PHOX, NCF-2, neutrop 98.4 6.1E-06 2.1E-10 79.7 16.9 146 450-615 9-155 (213)
125 1na0_A Designed protein CTPR3; 98.4 2.5E-06 8.4E-11 73.9 12.2 113 515-629 11-125 (125)
126 2lni_A Stress-induced-phosphop 98.4 2.4E-06 8.1E-11 75.2 12.2 113 515-630 18-133 (133)
127 3rjv_A Putative SEL1 repeat pr 98.4 7E-06 2.4E-10 79.5 16.3 172 431-612 5-199 (212)
128 2ifu_A Gamma-SNAP; membrane fu 98.4 1.6E-06 5.5E-11 89.5 11.6 197 424-642 3-222 (307)
129 2vyi_A SGTA protein; chaperone 98.4 3.1E-06 1.1E-10 74.0 11.9 115 515-631 14-130 (131)
130 1p5q_A FKBP52, FK506-binding p 98.4 1.7E-06 5.7E-11 90.7 11.6 158 462-641 128-291 (336)
131 3upv_A Heat shock protein STI1 98.4 3.2E-06 1.1E-10 74.0 11.7 94 550-643 5-100 (126)
132 1a17_A Serine/threonine protei 98.3 5E-06 1.7E-10 76.4 13.2 123 517-642 17-144 (166)
133 3u3w_A Transcriptional activat 98.3 6.8E-05 2.3E-09 76.5 22.1 158 453-610 81-266 (293)
134 4f3v_A ESX-1 secretion system 98.3 1.5E-05 5E-10 79.5 15.8 180 459-643 18-236 (282)
135 4f3v_A ESX-1 secretion system 98.3 4.7E-06 1.6E-10 83.1 12.3 133 485-622 109-248 (282)
136 2e2e_A Formate-dependent nitri 98.2 6.3E-06 2.2E-10 77.0 11.9 115 526-643 23-143 (177)
137 3gw4_A Uncharacterized protein 98.2 1.7E-05 5.6E-10 75.7 14.8 154 459-641 4-173 (203)
138 2fbn_A 70 kDa peptidylprolyl i 98.2 2.8E-06 9.5E-11 81.3 9.1 171 452-643 9-185 (198)
139 1hxi_A PEX5, peroxisome target 98.2 3.8E-06 1.3E-10 73.1 9.1 94 550-643 18-113 (121)
140 2kck_A TPR repeat; tetratricop 98.2 7E-06 2.4E-10 69.5 10.7 96 549-644 6-106 (112)
141 2e2e_A Formate-dependent nitri 98.2 5.3E-06 1.8E-10 77.5 10.4 129 490-622 22-156 (177)
142 2qfc_A PLCR protein; TPR, HTH, 98.2 3.5E-05 1.2E-09 78.8 17.4 161 449-609 77-265 (293)
143 3q49_B STIP1 homology and U bo 98.2 1.5E-05 5.1E-10 70.6 12.3 96 548-643 8-105 (137)
144 2vgx_A Chaperone SYCD; alterna 98.2 2.9E-06 9.9E-11 76.9 7.7 104 515-621 23-129 (148)
145 1elw_A TPR1-domain of HOP; HOP 98.2 1.5E-05 5.2E-10 68.0 11.6 105 515-622 6-113 (118)
146 2dba_A Smooth muscle cell asso 98.2 2.1E-05 7.3E-10 70.5 12.9 77 551-627 67-145 (148)
147 3gw4_A Uncharacterized protein 98.1 4.7E-05 1.6E-09 72.5 16.0 127 447-573 26-171 (203)
148 1elw_A TPR1-domain of HOP; HOP 98.1 2.6E-05 8.8E-10 66.5 12.8 93 551-643 6-100 (118)
149 1wao_1 Serine/threonine protei 98.1 5.8E-06 2E-10 90.9 10.0 115 523-640 16-135 (477)
150 1na0_A Designed protein CTPR3; 98.1 3.1E-05 1.1E-09 66.8 12.8 95 549-643 9-105 (125)
151 3sz7_A HSC70 cochaperone (SGT) 98.1 1E-05 3.4E-10 74.6 9.9 91 552-642 14-106 (164)
152 3gyz_A Chaperone protein IPGC; 98.1 7.5E-06 2.5E-10 74.3 8.4 95 518-615 41-138 (151)
153 3rkv_A Putative peptidylprolyl 98.1 1.6E-05 5.4E-10 73.1 10.9 63 581-643 63-125 (162)
154 2lni_A Stress-induced-phosphop 98.1 3.1E-05 1.1E-09 67.8 12.4 95 549-643 16-112 (133)
155 2dba_A Smooth muscle cell asso 98.1 3.8E-05 1.3E-09 68.8 13.0 95 549-643 28-127 (148)
156 1a17_A Serine/threonine protei 98.1 4E-05 1.4E-09 70.2 13.4 125 480-608 15-144 (166)
157 2xcb_A PCRH, regulatory protei 98.1 1.1E-05 3.7E-10 72.4 9.0 106 516-624 21-129 (142)
158 3sz7_A HSC70 cochaperone (SGT) 98.1 2E-05 7E-10 72.5 10.9 106 515-623 13-121 (164)
159 3upv_A Heat shock protein STI1 98.1 1.8E-05 6.1E-10 69.1 9.9 106 517-625 8-122 (126)
160 2vyi_A SGTA protein; chaperone 98.0 4.6E-05 1.6E-09 66.3 12.3 95 549-643 12-108 (131)
161 3dss_A Geranylgeranyl transfer 98.0 0.00064 2.2E-08 69.7 22.1 227 389-623 41-317 (331)
162 1wao_1 Serine/threonine protei 98.0 1.1E-05 3.6E-10 88.8 9.5 117 453-573 12-134 (477)
163 3q7a_A Farnesyltransferase alp 98.0 0.0014 4.7E-08 67.6 24.2 157 380-540 57-235 (349)
164 4gcn_A Protein STI-1; structur 98.0 2.1E-05 7.1E-10 69.0 9.0 92 551-642 10-110 (127)
165 3q7a_A Farnesyltransferase alp 98.0 0.00061 2.1E-08 70.2 21.2 211 428-643 70-330 (349)
166 2c2l_A CHIP, carboxy terminus 98.0 3E-05 1E-09 78.7 11.5 93 347-440 5-100 (281)
167 2xev_A YBGF; tetratricopeptide 98.0 3.1E-05 1.1E-09 67.7 9.9 90 554-643 7-104 (129)
168 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 5E-05 1.7E-09 83.0 13.5 160 461-642 248-413 (457)
169 2hr2_A Hypothetical protein; a 98.0 9E-06 3.1E-10 73.2 6.1 62 582-643 58-130 (159)
170 3q49_B STIP1 homology and U bo 97.9 3.3E-05 1.1E-09 68.4 9.5 99 512-613 8-109 (137)
171 1elr_A TPR2A-domain of HOP; HO 97.9 5.5E-05 1.9E-09 65.8 10.6 94 550-643 5-107 (131)
172 1p5q_A FKBP52, FK506-binding p 97.9 6.6E-05 2.2E-09 78.4 11.9 139 425-568 126-283 (336)
173 2hr2_A Hypothetical protein; a 97.9 2E-05 6.9E-10 70.9 6.7 112 480-622 13-143 (159)
174 3k9i_A BH0479 protein; putativ 97.9 1.2E-05 3.9E-10 69.4 5.0 83 561-643 2-89 (117)
175 2fbn_A 70 kDa peptidylprolyl i 97.8 0.00015 5.1E-09 69.0 12.9 62 582-643 89-150 (198)
176 3n71_A Histone lysine methyltr 97.8 7.4E-05 2.5E-09 81.6 12.0 123 525-647 321-467 (490)
177 1ihg_A Cyclophilin 40; ppiase 97.8 4.8E-05 1.6E-09 80.5 9.9 138 478-637 223-363 (370)
178 2kck_A TPR repeat; tetratricop 97.8 0.00011 3.7E-09 61.9 10.4 98 516-615 9-111 (112)
179 4b4t_Q 26S proteasome regulato 97.8 0.0001 3.6E-09 79.7 12.7 162 480-641 57-242 (434)
180 3dss_A Geranylgeranyl transfer 97.8 0.0026 8.9E-08 65.2 22.1 210 429-643 47-303 (331)
181 1elr_A TPR2A-domain of HOP; HO 97.8 0.00015 5.1E-09 63.0 11.0 115 479-626 5-123 (131)
182 2xev_A YBGF; tetratricopeptide 97.8 0.00016 5.4E-09 63.0 11.0 102 520-624 9-119 (129)
183 1hxi_A PEX5, peroxisome target 97.8 6.8E-05 2.3E-09 65.0 8.4 96 517-615 21-119 (121)
184 3ro3_A PINS homolog, G-protein 97.8 0.00012 4E-09 66.3 10.5 135 479-642 10-156 (164)
185 4gcn_A Protein STI-1; structur 97.8 0.00015 5E-09 63.5 10.5 59 480-540 10-69 (127)
186 1dce_A Protein (RAB geranylger 97.7 0.00054 1.9E-08 76.6 17.2 169 461-633 43-244 (567)
187 3rkv_A Putative peptidylprolyl 97.7 7.1E-05 2.4E-09 68.6 8.2 123 478-626 11-143 (162)
188 2if4_A ATFKBP42; FKBP-like, al 97.7 5.7E-05 1.9E-09 78.9 8.4 146 479-644 180-328 (338)
189 2if4_A ATFKBP42; FKBP-like, al 97.7 4.7E-05 1.6E-09 79.6 7.6 112 515-643 181-292 (338)
190 3k9i_A BH0479 protein; putativ 97.7 3.5E-05 1.2E-09 66.3 5.3 99 527-625 4-105 (117)
191 3ro3_A PINS homolog, G-protein 97.7 0.00016 5.5E-09 65.4 10.0 94 447-540 9-116 (164)
192 2l6j_A TPR repeat-containing p 97.7 7.5E-05 2.6E-09 63.0 6.7 89 549-637 4-100 (111)
193 3ma5_A Tetratricopeptide repea 97.6 0.00021 7.2E-09 59.4 8.6 64 580-643 6-69 (100)
194 1ihg_A Cyclophilin 40; ppiase 97.6 0.00026 9E-09 74.8 11.3 112 513-643 223-335 (370)
195 1kt0_A FKBP51, 51 kDa FK506-bi 97.6 0.00048 1.6E-08 75.2 13.4 112 514-644 269-380 (457)
196 4b4t_Q 26S proteasome regulato 97.6 0.00094 3.2E-08 72.1 15.7 158 486-643 12-203 (434)
197 1na3_A Designed protein CTPR2; 97.5 0.00027 9.4E-09 56.9 8.4 81 549-629 9-91 (91)
198 3n71_A Histone lysine methyltr 97.4 0.00027 9.4E-09 77.1 9.1 115 558-690 318-450 (490)
199 2kat_A Uncharacterized protein 97.4 0.00032 1.1E-08 59.8 7.7 77 567-643 3-81 (115)
200 3bee_A Putative YFRE protein; 97.4 0.00064 2.2E-08 55.4 8.7 69 578-646 3-74 (93)
201 3qwp_A SET and MYND domain-con 97.3 0.00038 1.3E-08 74.8 8.6 113 559-689 297-427 (429)
202 1zu2_A Mitochondrial import re 97.2 0.00021 7.3E-09 64.1 4.1 84 560-643 13-119 (158)
203 2l6j_A TPR repeat-containing p 97.2 0.001 3.5E-08 55.8 7.8 65 579-643 2-66 (111)
204 3qww_A SET and MYND domain-con 97.1 0.00042 1.4E-08 74.3 6.2 82 583-682 342-431 (433)
205 1zu2_A Mitochondrial import re 97.1 0.00018 6.1E-09 64.6 2.4 105 489-620 13-130 (158)
206 1na3_A Designed protein CTPR2; 97.0 0.0038 1.3E-07 49.9 9.4 63 581-643 9-71 (91)
207 1klx_A Cysteine rich protein B 96.9 0.0029 9.8E-08 56.0 8.7 110 492-610 9-126 (138)
208 2kat_A Uncharacterized protein 96.9 0.0014 4.7E-08 55.7 6.1 80 532-614 4-86 (115)
209 3qww_A SET and MYND domain-con 96.9 0.0036 1.2E-07 67.0 10.7 70 551-620 342-426 (433)
210 1klx_A Cysteine rich protein B 96.8 0.0086 2.9E-07 52.8 11.2 112 527-646 9-128 (138)
211 3ly7_A Transcriptional activat 96.8 0.021 7.3E-07 58.6 14.8 137 476-614 192-343 (372)
212 3qwp_A SET and MYND domain-con 96.7 0.0081 2.8E-07 64.4 12.1 72 551-622 331-417 (429)
213 1dce_A Protein (RAB geranylger 96.7 0.021 7.2E-07 63.7 15.3 146 491-641 42-218 (567)
214 3mkq_A Coatomer beta'-subunit; 96.6 0.076 2.6E-06 62.2 20.5 102 354-472 660-761 (814)
215 3ma5_A Tetratricopeptide repea 96.5 0.0081 2.8E-07 49.5 8.1 63 477-540 6-68 (100)
216 2kc7_A BFR218_protein; tetratr 96.4 0.01 3.5E-07 48.4 8.2 64 555-618 6-72 (99)
217 2kc7_A BFR218_protein; tetratr 96.3 0.0082 2.8E-07 49.0 7.1 57 587-643 6-63 (99)
218 3ly7_A Transcriptional activat 96.3 0.014 4.7E-07 60.0 10.0 131 509-643 190-338 (372)
219 3lvg_A Clathrin heavy chain 1; 96.3 0.0025 8.7E-08 66.6 4.2 432 40-535 53-534 (624)
220 3mkq_A Coatomer beta'-subunit; 96.0 0.19 6.6E-06 58.7 19.7 47 457-505 662-708 (814)
221 1pc2_A Mitochondria fission pr 95.8 0.046 1.6E-06 48.3 9.6 65 579-643 30-99 (152)
222 1pc2_A Mitochondria fission pr 95.7 0.14 4.9E-06 45.2 12.2 39 583-621 73-111 (152)
223 3u64_A Protein TP_0956; tetrat 95.6 0.036 1.2E-06 54.6 8.6 87 565-651 179-276 (301)
224 2v5f_A Prolyl 4-hydroxylase su 95.3 0.066 2.3E-06 44.3 8.4 70 553-622 9-87 (104)
225 1wy6_A Hypothetical protein ST 94.9 1.5 5.3E-05 37.3 17.4 140 489-647 18-157 (172)
226 3mkq_B Coatomer subunit alpha; 94.7 0.8 2.7E-05 41.5 14.3 129 455-607 13-141 (177)
227 3bee_A Putative YFRE protein; 94.4 0.13 4.3E-06 41.6 7.5 69 547-615 4-77 (93)
228 3mkq_B Coatomer subunit alpha; 94.2 2.6 8.9E-05 38.1 16.3 104 354-474 13-116 (177)
229 4ady_A RPN2, 26S proteasome re 93.7 13 0.00045 43.1 28.1 148 354-505 498-656 (963)
230 3lvg_A Clathrin heavy chain 1; 93.6 0.0012 4.1E-08 69.1 -7.5 360 57-495 41-427 (624)
231 3u64_A Protein TP_0956; tetrat 93.3 0.56 1.9E-05 46.2 11.0 112 459-575 133-266 (301)
232 1nzn_A CGI-135 protein, fissio 92.3 1.3 4.4E-05 37.6 10.5 75 547-621 33-114 (126)
233 1nzn_A CGI-135 protein, fissio 92.3 0.69 2.4E-05 39.2 8.8 66 578-643 32-102 (126)
234 2v5f_A Prolyl 4-hydroxylase su 91.9 1.2 4.2E-05 36.4 10.1 64 580-643 4-74 (104)
235 4gns_B Protein CSD3, chitin bi 91.4 0.42 1.4E-05 54.3 8.6 55 588-642 344-398 (754)
236 1qsa_A Protein (soluble lytic 91.1 22 0.00074 39.5 28.2 263 345-622 71-356 (618)
237 1y8m_A FIS1; mitochondria, unk 91.0 3.7 0.00013 35.4 12.1 29 587-615 83-111 (144)
238 2qx5_A Nucleoporin NIC96; mRNA 86.3 12 0.00042 41.7 15.5 84 383-477 300-386 (661)
239 2p58_C Putative type III secre 85.6 10 0.00035 30.2 10.1 87 427-518 22-108 (116)
240 2wpv_A GET4, UPF0363 protein Y 85.3 32 0.0011 34.3 19.5 166 248-439 36-215 (312)
241 4h7y_A Dual specificity protei 85.3 6.1 0.00021 34.4 9.7 97 171-270 10-119 (161)
242 2uwj_G Type III export protein 85.0 9.6 0.00033 30.3 9.7 87 427-518 21-107 (115)
243 1y8m_A FIS1; mitochondria, unk 84.5 12 0.00042 32.2 11.3 68 510-580 36-109 (144)
244 1wy6_A Hypothetical protein ST 84.3 19 0.00063 30.8 13.1 136 389-542 19-154 (172)
245 3o48_A Mitochondria fission 1 84.1 4.3 0.00015 34.5 8.1 71 547-617 38-114 (134)
246 4h7y_A Dual specificity protei 83.9 7.5 0.00026 33.9 9.6 106 475-615 10-128 (161)
247 4b4t_P 26S proteasome regulato 83.3 15 0.00051 39.1 14.2 177 461-642 30-245 (445)
248 3lpz_A GET4 (YOR164C homolog); 83.1 41 0.0014 33.8 22.1 132 249-391 39-181 (336)
249 2qx5_A Nucleoporin NIC96; mRNA 82.5 32 0.0011 38.3 16.8 40 148-187 157-199 (661)
250 2wpv_A GET4, UPF0363 protein Y 82.0 43 0.0015 33.3 21.6 167 350-542 37-217 (312)
251 3ffl_A Anaphase-promoting comp 80.2 8.3 0.00028 34.2 8.8 22 555-576 128-149 (167)
252 4b4t_P 26S proteasome regulato 79.3 68 0.0023 33.9 21.5 96 480-575 139-244 (445)
253 1zbp_A Hypothetical protein VP 79.2 11 0.00037 36.5 10.0 123 488-616 7-135 (273)
254 2uwj_G Type III export protein 78.6 23 0.00078 28.2 9.7 84 328-416 23-106 (115)
255 2p58_C Putative type III secre 78.2 24 0.00083 28.1 9.9 84 328-416 24-107 (116)
256 3esl_A Checkpoint serine/threo 78.2 42 0.0014 30.8 13.7 107 566-698 61-173 (202)
257 2ff4_A Probable regulatory pro 78.2 11 0.00039 39.1 11.0 70 482-552 175-248 (388)
258 3lpz_A GET4 (YOR164C homolog); 77.1 64 0.0022 32.4 21.0 168 348-541 37-215 (336)
259 3txn_A 26S proteasome regulato 76.2 72 0.0025 33.0 16.1 55 519-573 105-163 (394)
260 1v54_E Cytochrome C oxidase po 75.6 17 0.00058 29.2 8.3 50 572-621 36-85 (109)
261 3o48_A Mitochondria fission 1 75.0 19 0.00067 30.5 9.3 81 498-581 23-111 (134)
262 2ff4_A Probable regulatory pro 74.8 5.6 0.00019 41.5 7.5 60 584-643 174-233 (388)
263 3eiq_C Programmed cell death p 70.9 33 0.0011 34.9 11.8 74 349-422 220-298 (358)
264 3ltm_A Alpha-REP4; protein eng 69.8 67 0.0023 29.4 18.7 79 445-527 93-171 (211)
265 4fhn_B Nucleoporin NUP120; pro 69.5 1.1E+02 0.0037 36.9 18.1 147 484-647 818-970 (1139)
266 4fhn_B Nucleoporin NUP120; pro 69.3 76 0.0026 38.3 16.6 143 417-567 817-989 (1139)
267 2l0z_A Glycoprotein G2; zinc-b 68.5 1.6 5.5E-05 27.8 0.9 13 771-783 16-29 (42)
268 1v54_E Cytochrome C oxidase po 68.4 33 0.0011 27.5 8.4 63 493-557 25-87 (109)
269 2y69_E Cytochrome C oxidase su 65.2 30 0.001 29.3 8.1 69 567-647 74-142 (152)
270 1wdy_A 2-5A-dependent ribonucl 64.8 97 0.0033 29.5 14.0 41 330-370 198-240 (285)
271 3ffl_A Anaphase-promoting comp 64.6 30 0.001 30.6 8.6 26 616-641 123-148 (167)
272 1wdy_A 2-5A-dependent ribonucl 64.2 55 0.0019 31.4 12.0 47 223-269 192-240 (285)
273 4gns_B Protein CSD3, chitin bi 61.5 52 0.0018 37.3 12.0 18 389-406 260-278 (754)
274 1qc6_A EVH1 domain from ENA/VA 59.7 4 0.00014 34.9 2.0 40 732-779 44-87 (130)
275 1zbp_A Hypothetical protein VP 55.6 22 0.00074 34.4 6.6 57 558-614 6-64 (273)
276 3ltj_A Alpharep-4; protein eng 55.1 1.2E+02 0.0041 27.3 19.0 80 445-528 88-167 (201)
277 2lo3_A SAGA-associated factor 54.7 3.3 0.00011 26.7 0.5 13 740-752 16-28 (44)
278 2y69_E Cytochrome C oxidase su 53.7 72 0.0025 27.1 8.4 60 496-557 71-130 (152)
279 2zu6_B Programmed cell death p 51.3 1.9E+02 0.0065 28.5 13.4 65 349-413 169-238 (307)
280 3mv2_A Coatomer subunit alpha; 49.8 69 0.0023 31.8 9.2 42 572-613 196-239 (325)
281 2nsz_A Programmed cell death p 47.6 1E+02 0.0034 26.0 9.0 65 349-413 10-79 (129)
282 4ady_A RPN2, 26S proteasome re 47.0 4E+02 0.014 31.0 31.2 214 356-575 384-620 (963)
283 4b4t_R RPN7, 26S proteasome re 46.4 67 0.0023 33.7 9.4 90 551-640 133-233 (429)
284 3kea_A K1L; tropism, ANK repea 46.4 1.5E+02 0.0051 28.6 11.7 91 215-313 131-225 (285)
285 3kea_A K1L; tropism, ANK repea 45.4 1.5E+02 0.005 28.7 11.4 23 45-67 32-54 (285)
286 1k1a_A B-cell lymphoma 3-encod 41.8 1.1E+02 0.0039 28.1 9.7 18 253-270 155-172 (241)
287 3ltm_A Alpha-REP4; protein eng 41.3 2E+02 0.0069 25.9 19.8 153 345-506 32-184 (211)
288 4a1g_A Mitotic checkpoint seri 41.1 1.8E+02 0.0061 25.3 9.7 76 566-647 52-133 (152)
289 4b4t_R RPN7, 26S proteasome re 40.9 73 0.0025 33.4 8.7 96 449-544 133-239 (429)
290 3ltj_A Alpharep-4; protein eng 40.2 2E+02 0.0069 25.6 20.6 155 343-506 25-179 (201)
291 2ion_A PDCD4, programmed cell 38.4 99 0.0034 26.9 7.6 65 349-413 12-81 (152)
292 3hra_A Ankyrin repeat family p 38.3 1.6E+02 0.0055 26.1 9.9 57 254-310 112-172 (201)
293 2zu6_B Programmed cell death p 37.9 2.9E+02 0.0098 27.3 11.9 193 349-542 6-231 (307)
294 1n11_A Ankyrin; clathrin, BAND 37.0 3.1E+02 0.011 28.2 13.1 18 253-270 118-135 (437)
295 1k1a_A B-cell lymphoma 3-encod 36.2 1.9E+02 0.0066 26.5 10.3 25 184-209 16-40 (241)
296 1qsa_A Protein (soluble lytic 35.3 4.8E+02 0.017 28.6 37.3 363 247-634 74-469 (618)
297 2wvi_A Mitotic checkpoint seri 34.0 2.3E+02 0.0078 25.0 9.2 76 566-647 47-128 (164)
298 3jxi_A Vanilloid receptor-rela 33.3 90 0.0031 29.5 7.5 87 184-271 12-116 (260)
299 3eu9_A Huntingtin-interacting 32.0 1.6E+02 0.0053 27.0 8.9 14 154-167 117-130 (240)
300 3twe_A Alpha4H; unknown functi 31.7 53 0.0018 18.0 2.8 17 674-690 3-19 (27)
301 1j0t_A MIH, MOLT-inhibiting ho 31.0 5.3 0.00018 30.3 -1.6 14 739-752 20-33 (78)
302 2k0q_A Putative uncharacterize 30.7 14 0.00048 26.9 0.6 20 760-779 8-27 (74)
303 3mkr_B Coatomer subunit alpha; 30.2 90 0.0031 30.9 6.6 42 572-613 187-230 (320)
304 3bqo_A Telomeric repeat-bindin 29.8 2.3E+02 0.0079 25.8 8.4 60 565-624 94-160 (211)
305 2hgo_A CASSIICOLIN; toxin, dis 28.2 10 0.00035 20.9 -0.3 13 772-784 8-22 (27)
306 3eu9_A Huntingtin-interacting 27.1 2E+02 0.0067 26.3 8.6 21 150-170 46-66 (240)
307 3hra_A Ankyrin repeat family p 27.0 2.5E+02 0.0086 24.8 9.1 18 51-68 12-29 (201)
308 1n11_A Ankyrin; clathrin, BAND 26.1 3E+02 0.01 28.2 10.7 53 456-513 317-372 (437)
309 2r9g_A AAA ATPase, central reg 25.4 2.9E+02 0.0099 25.2 8.4 62 381-443 15-84 (204)
310 2nsz_A Programmed cell death p 24.6 3.1E+02 0.01 22.9 8.8 62 450-511 10-76 (129)
311 2dl1_A Spartin; SPG20, MIT, st 24.5 2.1E+02 0.0071 23.5 6.6 35 600-643 48-82 (116)
312 3jxi_A Vanilloid receptor-rela 24.5 1.3E+02 0.0045 28.3 6.9 49 84-133 14-71 (260)
313 4b4t_S RPN3, 26S proteasome re 24.3 1.9E+02 0.0066 30.9 8.3 58 515-574 233-295 (523)
314 3b7b_A Euchromatic histone-lys 22.5 2.9E+02 0.0098 25.2 8.8 201 92-305 24-236 (237)
315 1ya0_A SMG-7 transcript varian 22.1 1.3E+02 0.0046 32.0 6.7 43 591-633 162-204 (497)
316 3mhs_E SAGA-associated factor 21.9 19 0.00065 28.2 -0.0 24 726-753 64-87 (96)
317 3qye_A TBC1 domain family memb 21.8 5.8E+02 0.02 25.1 11.9 88 297-384 209-301 (331)
318 4aez_C MAD3, mitotic spindle c 21.1 1.2E+02 0.0041 28.3 5.2 76 566-647 101-182 (223)
319 2pk8_A Uncharacterized protein 20.5 79 0.0027 24.5 3.1 45 673-725 14-58 (103)
320 2d2s_A Exocyst complex compone 20.5 1.9E+02 0.0066 27.2 6.7 27 547-573 89-115 (235)
321 2ion_A PDCD4, programmed cell 20.5 2.9E+02 0.01 23.8 7.4 62 450-511 12-78 (152)
322 3ljn_A Hypothetical protein; a 20.1 1.7E+02 0.0059 29.2 7.0 17 254-270 179-195 (364)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7e-43 Score=402.38 Aligned_cols=523 Identities=10% Similarity=-0.039 Sum_probs=363.8
Q ss_pred chhHHHHHHHHHHhCCCCChhhHhHHHHHhhCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHhh
Q 044131 22 QSQLTQTHAQIIIHGFQNDLSTVTKLAHRLSDFKATCYARALFFSIPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKN 101 (784)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~ 101 (784)
....+++|......++..+.. ..+...+.++|.+..++..|+.++.+++..|+.++..|.+.|++++|+. +|+.|..
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~-~~~~~~~ 112 (597)
T 2xpi_A 36 MGALNANNSNSQLSTLTISPM--TYLANNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAF-VGEKVLD 112 (597)
T ss_dssp ---------CTTSCGGGGCGG--GGGC---------------------CHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred HHHHhhccccccccceeechh--hhhcccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHH-HHHHHHh
Confidence 333444555444333332222 2233456788999999999999999999999999999999999999999 9999984
Q ss_pred CCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCC-CC--------
Q 044131 102 TALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMP-EK-------- 172 (784)
Q Consensus 102 ~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~-~~-------- 172 (784)
..|+..++..+..+|.+.|+++.|..+++.+... ++++.+++.++.+|.++|++++|+++|+++. ..
T Consensus 113 --~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 188 (597)
T 2xpi_A 113 --ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANK 188 (597)
T ss_dssp --HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC--------
T ss_pred --hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccc
Confidence 5688899999999999999999999999987644 6889999999999999999999999999544 33
Q ss_pred ----------CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhh-HHhHHHHHhcccchh--HHHHH-HHHHHH
Q 044131 173 ----------DTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTS-VAAVLPAVAEVQELR--LGMEI-QCLGLK 238 (784)
Q Consensus 173 ----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-~~~ll~a~~~~~~~~--~a~~~-~~~~~~ 238 (784)
++.+|+.++.+|.+.|++++|+++|++|.+. .|+..+ +..+...+...+..+ .+..+ +..+..
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (597)
T 2xpi_A 189 LLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV---DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265 (597)
T ss_dssp --CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHG
T ss_pred ccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHhhcccchhHHHHHHhcCCccccc
Confidence 4789999999999999999999999999875 355443 333333332222211 12222 444555
Q ss_pred hCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHh
Q 044131 239 LGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR--PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVG 316 (784)
Q Consensus 239 ~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 316 (784)
.+..+...+++.++.+|.++|++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|++|...+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------- 335 (597)
T 2xpi_A 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID---------- 335 (597)
T ss_dssp GGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------
T ss_pred chHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC----------
Confidence 55556667788889999999999999999999977 888899999999999999999999999987653
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCCh
Q 044131 317 LIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESS---EKSLASWNAMIAGYTQNGLT 393 (784)
Q Consensus 317 ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 393 (784)
+.+..+++.++..|.+.|++++|.++|+.+. ..+..+|+.++..|.+.|++
T Consensus 336 --------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 336 --------------------------PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp --------------------------TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCH
T ss_pred --------------------------cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccH
Confidence 1122334444445555555555555555432 22445566666666666666
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhc
Q 044131 394 EEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLM 473 (784)
Q Consensus 394 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~ 473 (784)
++|.++|+++... . +.+..+++.++.+|.+.|++++|.++|+++
T Consensus 390 ~~A~~~~~~~~~~-----------------------------------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 390 SEARRYFSKSSTM-----------------------------------D-PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHH-----------------------------------C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-----------------------------------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666666555442 1 234455666666666666666666666655
Q ss_pred C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc---CCCC
Q 044131 474 S---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDH---GFKP 547 (784)
Q Consensus 474 ~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p 547 (784)
. ..+..+|+.++.+|.+.|++++|+++|++|.+.. +.+..+|..+...|.+.|++++|.++|+++.+.. +..|
T Consensus 434 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p 512 (597)
T 2xpi_A 434 ARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNE 512 (597)
T ss_dssp HHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccch
Confidence 3 2366677777777777777777777777777643 3456777777777777777888877777776432 5567
Q ss_pred C--cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 548 L--AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 548 ~--~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
+ ..+|..++.+|.+.|++++|.++++++. ..| +..+|..+..+|...|++++|...++++++++|+++..+..|++
T Consensus 513 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 513 KPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 6 6788888888888888888888888763 334 77899999999999999999999999999999999999999998
Q ss_pred HHHh
Q 044131 624 IYSA 627 (784)
Q Consensus 624 ~y~~ 627 (784)
+|..
T Consensus 593 ~~~~ 596 (597)
T 2xpi_A 593 ALEE 596 (597)
T ss_dssp TTC-
T ss_pred HHhc
Confidence 8754
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=6.7e-42 Score=394.14 Aligned_cols=480 Identities=11% Similarity=-0.015 Sum_probs=402.8
Q ss_pred HhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHH
Q 044131 152 LYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGME 231 (784)
Q Consensus 152 ~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 231 (784)
.+.++|.+..++..|+.++.+++..|+.++.+|.+.|++++|+.+|++|.. ..||..++..+..+|...|+++.|..
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 62 NTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 456788889999999999999999999999999999999999999999984 46888999999999999999999999
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCC-CC------------------CeeeHHHHHHHHHhCCCc
Q 044131 232 IQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIV-RP------------------DLISCNAMISGYTCNGKT 292 (784)
Q Consensus 232 ~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~-~~------------------d~~~~~~li~~~~~~g~~ 292 (784)
++..++.. +++..+++.++.+|.++|++++|.++|+++. .. ++.+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99987643 6889999999999999999999999999653 33 478999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCChh-hHHhHHHhhcCCCChhH--HHHH-HHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHH
Q 044131 293 ESSLRLFRQLLASAERVNSS-TIVGLIPVFYPFGHLHL--TNCI-HSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKL 368 (784)
Q Consensus 293 ~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~--a~~i-~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~ 368 (784)
++|+++|++|.+.+ |+.. .+..+...+...+..+. ...+ +..+...+......+++.++.+|.++|++++|.++
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHH
Confidence 99999999999864 4433 34444433333222111 1111 34444445556667788889999999999999999
Q ss_pred HhhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCc
Q 044131 369 FDESSE--KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESN 446 (784)
Q Consensus 369 f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~ 446 (784)
|+++.+ ++..+|+.++.+|.+.|++++|+++|++|...+ +.+..++..++.++...|+.++|.+++..+.+.. +.+
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~ 372 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK 372 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence 999987 799999999999999999999999999999765 3467889999999999999999999999999764 667
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYAC 523 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 523 (784)
..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|++|.+.+ +++..++..++.+|
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 8999999999999999999999999875 4578899999999999999999999999999864 45789999999999
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhc
Q 044131 524 SHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-------AVEPG--PAVWGALLGACMIH 594 (784)
Q Consensus 524 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~--~~~~~~ll~a~~~~ 594 (784)
.+.|++++|.++|+++.+.. +.+...|.+++.+|.+.|++++|.++++++ +..|+ ..+|..++.+|..+
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~ 529 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF--QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL 529 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence 99999999999999998642 335789999999999999999999999887 45787 78999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 595 KDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 595 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|++++|...++++++++|+++..|..++++|...|+|++|.+.++.+.+
T Consensus 530 g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 578 (597)
T 2xpi_A 530 KMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLA 578 (597)
T ss_dssp TCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999998876
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.2e-26 Score=256.73 Aligned_cols=184 Identities=13% Similarity=0.110 Sum_probs=172.4
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhC---------chHHHHHHHHHHHHcCCCCchh
Q 044131 378 ASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLG---------AISLGKWVHELVKSRNFESNIY 448 (784)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~---------~~~~a~~i~~~~~~~g~~~~~~ 448 (784)
..++.+|.+|++.|+.++|+++|++|.+.|++||.+||+++|.+|+..+ .++.|.++++.|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4688899999999999999999999999999999999999999998755 3688999999999999999999
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHhhcC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044131 449 VSTALIDMYAKCGNIVEARELFDLMS----HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACS 524 (784)
Q Consensus 449 ~~~~Li~~y~k~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 524 (784)
+||+||++|+++|++++|.++|++|. .||.++||+||.+|++.|+.++|.++|++|.+.|+.||..||++|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999997 58999999999999999999999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhc
Q 044131 525 HAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRA 562 (784)
Q Consensus 525 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~ 562 (784)
+.|++++|.++|++|.+ .++.|+..+|+.+++.|.+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~-~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRD-LVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHH-HTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHH-hCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999975 49999999999999998764
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=1.1e-23 Score=228.21 Aligned_cols=372 Identities=13% Similarity=0.088 Sum_probs=269.4
Q ss_pred HHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCch
Q 044131 217 LPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR---PDLISCNAMISGYTCNGKTE 293 (784)
Q Consensus 217 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~ 293 (784)
...+...|++++|.+.+..+++.. +.+...+..+...+.+.|++++|...++.... .+..+|+.+...|.+.|+++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 345566778888888877777653 33455666667777777888888777766532 34556777777777777777
Q ss_pred HHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcC
Q 044131 294 SSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESS 373 (784)
Q Consensus 294 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~ 373 (784)
+|+..|+++... .|+ +...+..+...|.+.|++++|.+.|+++.
T Consensus 85 ~A~~~~~~al~~--~p~----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (388)
T 1w3b_A 85 EAIEHYRHALRL--KPD----------------------------------FIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHHHH--CTT----------------------------------CHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--Ccc----------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777777654 222 23344455555555555555555555433
Q ss_pred C---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhH
Q 044131 374 E---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVS 450 (784)
Q Consensus 374 ~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~ 450 (784)
. .+...|..+...|.+.|++++|.+.|+++.... +.+..++..+...+...|+++.|...++.+.+.. +.+...+
T Consensus 129 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 206 (388)
T 1w3b_A 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAY 206 (388)
T ss_dssp HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHH
Confidence 1 233455555566666666666666666665531 2234556666666666666666666666666654 3456667
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044131 451 TALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAG 527 (784)
Q Consensus 451 ~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 527 (784)
..+...|...|++++|...|++.. ..+..+|..+...|...|++++|++.|+++.+.. +.+..++..+..++...|
T Consensus 207 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKG 285 (388)
T ss_dssp HHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC
Confidence 777788888888888888887664 3457788889999999999999999999998853 334667888889999999
Q ss_pred CHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044131 528 LVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASE 605 (784)
Q Consensus 528 ~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~ 605 (784)
++++|.++|+.+.+. .+++...+..+..++.+.|++++|.+.++++. ..| +..+|..+..++...|++++|...++
T Consensus 286 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 286 SVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998854 23457888999999999999999999998873 445 57789999999999999999999999
Q ss_pred HHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 606 KLFELDPENVGYHVLLSNIYSAERD 630 (784)
Q Consensus 606 ~~~~l~p~~~~~~~~l~~~y~~~g~ 630 (784)
++++++|+++..|..++.+|...|+
T Consensus 364 ~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 364 EAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999887764
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=1.9e-26 Score=255.20 Aligned_cols=206 Identities=11% Similarity=0.060 Sum_probs=150.6
Q ss_pred HHHHHhhCCCCCCc-ccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCC
Q 044131 95 YTHLRKNTALTPDN-FTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKD 173 (784)
Q Consensus 95 ~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~ 173 (784)
+.+.+.+.+..+.+ ..++.+|.+|++.|++++|.++++.|.+.|+.||.++||+||.+|++.+...++
T Consensus 12 L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~----------- 80 (501)
T 4g26_A 12 LSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES----------- 80 (501)
T ss_dssp ------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-----------
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-----------
Confidence 66667666665443 357778888888888888888888888888888888888888888877654322
Q ss_pred cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044131 174 TVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVS 253 (784)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 253 (784)
.+.+..++|+++|++|... |+.||..||++++.+|++.|+++.|.+++..|.+.|+.||..+||+||.
T Consensus 81 -----------~~~~~l~~A~~lf~~M~~~-G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~ 148 (501)
T 4g26_A 81 -----------SPNPGLSRGFDIFKQMIVD-KVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALF 148 (501)
T ss_dssp -----------SCCHHHHHHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred -----------hhcchHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHH
Confidence 2344567889999999988 8999999999999999999999999999999888888888888888888
Q ss_pred HHHhcCChHHHHHHHhcC----CCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcC
Q 044131 254 FYSKCGEVERAELLFRDI----VRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYP 323 (784)
Q Consensus 254 ~y~~~g~~~~A~~~f~~~----~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 323 (784)
+|++.|++++|.++|++| ..||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..+..
T Consensus 149 ~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 149 GFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 877777777777777776 3366777777777777777777777777777777777777777666665543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.94 E-value=3.7e-23 Score=224.00 Aligned_cols=349 Identities=13% Similarity=0.117 Sum_probs=291.3
Q ss_pred HHHHhCCCchHHHHHHHHHHHcCCCCCh-hhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCH
Q 044131 284 SGYTCNGKTESSLRLFRQLLASAERVNS-STIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEM 362 (784)
Q Consensus 284 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~ 362 (784)
..+.+.|++++|++.++++.+. .|+. ..+..+...+...++++.+...+...++.. +.+...+..+...|.+.|++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 3445566666666666665554 2333 333344445555666666666666666543 56778899999999999999
Q ss_pred HHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhhCchHHHHHHHHHH
Q 044131 363 EAARKLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNP-VTVSSILSACAQLGAISLGKWVHELV 438 (784)
Q Consensus 363 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~~ll~a~~~~~~~~~a~~i~~~~ 438 (784)
++|.+.|+++. ..+..+|..+...|.+.|++++|++.|+++... .|+. ..+..+...+...|++++|.+.+..+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999864 345668999999999999999999999999875 4554 45666777888899999999999999
Q ss_pred HHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHH
Q 044131 439 KSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGV 514 (784)
Q Consensus 439 ~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~ 514 (784)
.+.. +.+..+++.+...|.+.|++++|...|+++. ..+...|..+...+...|++++|+..|++..+. .| +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHH
Confidence 9875 5567889999999999999999999999886 345778999999999999999999999999884 45 567
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGAC 591 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~ 591 (784)
++..+..++...|++++|.+.|+.+.+ +.|+ ...|..+...|.+.|++++|.+.++++. .+++..+|..+...+
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIE---LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 888999999999999999999999985 3454 6789999999999999999999999873 355788999999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...|++++|...+++++++.|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 367 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 367 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998875
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.91 E-value=2.7e-22 Score=221.67 Aligned_cols=335 Identities=12% Similarity=0.080 Sum_probs=232.0
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHh
Q 044131 244 HVYVLTGLVSFYSKCGEVERAELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPV 320 (784)
Q Consensus 244 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 320 (784)
+...+..+...|.+.|++++|..+|+++.+ .+..+|..+...|.+.|++++|+..|+++.+.+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------- 90 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-------------- 90 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 444555555666666666666666655422 344455555555555555555555555554431
Q ss_pred hcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC---Ch---hHHHHHHHHHHhCCChh
Q 044131 321 FYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEK---SL---ASWNAMIAGYTQNGLTE 394 (784)
Q Consensus 321 ~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~---~~---~~~~~li~~~~~~g~~~ 394 (784)
+.+..++..+..+|.+.|++++|.+.|+.+... +. ..|..++..+...+
T Consensus 91 ----------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 145 (450)
T 2y4t_A 91 ----------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR--- 145 (450)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH---
T ss_pred ----------------------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHH---
Confidence 223344555555555555555555555554332 12 34444433321111
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC
Q 044131 395 EAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS 474 (784)
Q Consensus 395 ~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~ 474 (784)
+......+...|+++.|...+..+.+.. +.+..++..+..+|.++|++++|...|+++.
T Consensus 146 --------------------~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 204 (450)
T 2y4t_A 146 --------------------LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAAS 204 (450)
T ss_dssp --------------------HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHH
T ss_pred --------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1122333556677777777777777654 4567788888889999999999999988875
Q ss_pred ---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHH------------HHHHHccCCHHHHHHHHHH
Q 044131 475 ---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT-FLSV------------LYACSHAGLVREGDEIFQS 538 (784)
Q Consensus 475 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t-~~~l------------l~a~~~~g~~~~a~~~~~~ 538 (784)
..+..+|+.+...|...|++++|+..|+++.+. .|+... +..+ ..+|.+.|++++|..+|+.
T Consensus 205 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 282 (450)
T 2y4t_A 205 KLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES 282 (450)
T ss_dssp HHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 357889999999999999999999999999874 555443 3333 7889999999999999999
Q ss_pred hHHhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 044131 539 MIHDHGFKPL-----AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 539 m~~~~~~~p~-----~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~ 611 (784)
+.+. .|+ ..+|.+++.++.+.|++++|.+.++++ ...| +..+|..+..+|...|+++.|...++++++++
T Consensus 283 ~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 283 VMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred HHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 9864 455 458999999999999999999999986 3445 68899999999999999999999999999999
Q ss_pred CCCcchHHHHH------------HHHHhcC--ChHHHHHHHHHHHh
Q 044131 612 PENVGYHVLLS------------NIYSAER--DYLQAATVRQVVKK 643 (784)
Q Consensus 612 p~~~~~~~~l~------------~~y~~~g--~~~~a~~~~~~m~~ 643 (784)
|+++..+..++ +.|...| ++....++++.+++
T Consensus 360 p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 360 ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 99999999999 5577777 33333334444433
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.9e-21 Score=218.53 Aligned_cols=428 Identities=11% Similarity=-0.033 Sum_probs=285.5
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 044131 176 LWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFY 255 (784)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y 255 (784)
.|......+.+.|++++|+..|+++... .||..++..+..++...|+++.|...+..+++.. +.+...+..+..+|
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 4555666677777777777777777765 2677777777777777777777777777777654 33556777777777
Q ss_pred HhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCC-------------------CCChhh
Q 044131 256 SKCGEVERAELLFRDIVR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAE-------------------RVNSST 313 (784)
Q Consensus 256 ~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-------------------~p~~~t 313 (784)
.+.|++++|...|+++.. .+......++..+........+.+.+..+...+. .|+...
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 777777777777776632 2233333344333332222222222222221111 122222
Q ss_pred HHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHh---cCCHHHHHHHHhhcCC----------------
Q 044131 314 IVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSR---LNEMEAARKLFDESSE---------------- 374 (784)
Q Consensus 314 ~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~---~g~~~~A~~~f~~~~~---------------- 374 (784)
....+..+........ ..-+.+...+..+...+.. .|++++|...|+++..
T Consensus 164 ~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (514)
T 2gw1_A 164 MASFFGIFKPELTFAN----------YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLK 233 (514)
T ss_dssp HHHHHTTSCCCCCCSS----------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHH
T ss_pred HHHHHhhcCHHHHHHH----------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccC
Confidence 2222221111111000 0002234444444444444 7888888888876543
Q ss_pred C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHH
Q 044131 375 K-SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTAL 453 (784)
Q Consensus 375 ~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~L 453 (784)
+ +...|..+...|...|++++|+..|+++.... |+...+..+...+...|+++.|...+..+.+.. +.+..++..+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 310 (514)
T 2gw1_A 234 EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHR 310 (514)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHH
Confidence 1 24567788888888888899988888887754 447777778888888888888888888887764 4466778888
Q ss_pred HHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044131 454 IDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVR 530 (784)
Q Consensus 454 i~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 530 (784)
...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus 311 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 389 (514)
T 2gw1_A 311 GQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFD 389 (514)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHH
Confidence 888888888888888888764 3466788888888888888888888888888752 335667778888888888888
Q ss_pred HHHHHHHHhHHhcCCCCC----cchHHHHHHHHHh---cCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPL----AEHYACMVDILGR---AGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLAR 601 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r---~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~ 601 (784)
+|..+|+.+.+...-.|+ ...+..+...+.+ .|++++|.+.++++. ..| +..+|..+...+...|+++.|.
T Consensus 390 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 390 KALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHH
Confidence 888888888754322222 2378888888888 888888888887762 334 5668888888888888888888
Q ss_pred HHHHHHhcCCCCCcchHHHH
Q 044131 602 VASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 602 ~~~~~~~~l~p~~~~~~~~l 621 (784)
..++++++++|+++..+..+
T Consensus 470 ~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 470 TLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHhccccHHHHHHH
Confidence 88888888888877766655
No 9
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.88 E-value=8.5e-21 Score=213.28 Aligned_cols=424 Identities=9% Similarity=-0.041 Sum_probs=316.1
Q ss_pred hHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC---CCeeeHHHHHHHHHh
Q 044131 212 SVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR---PDLISCNAMISGYTC 288 (784)
Q Consensus 212 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~d~~~~~~li~~~~~ 288 (784)
.+...-..+...|++++|...+..+++.. |+...+..+..+|.+.|++++|...|+++.+ .+...|..+...|.+
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 85 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEG 85 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence 45556667788999999999999999976 6889999999999999999999999998743 455678899999999
Q ss_pred CCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHH---HHHHHHHhcCCHHHH
Q 044131 289 NGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLT---ALSTVYSRLNEMEAA 365 (784)
Q Consensus 289 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~---~Li~~y~~~g~~~~A 365 (784)
.|++++|+..|+++...+. ++......++..+........+.+.++.+.+.+..++....+ ..............+
T Consensus 86 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 86 LGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp TTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 9999999999999988763 344444444433322222222222121111111111000000 000111111122222
Q ss_pred HHHHhhcCC---------C-ChhHHHHHHHHHHh---CCChhHHHHHHHHHHh-----CCCCC--------CHHHHHHHH
Q 044131 366 RKLFDESSE---------K-SLASWNAMIAGYTQ---NGLTEEAISLFQEMQA-----SKVAP--------NPVTVSSIL 419 (784)
Q Consensus 366 ~~~f~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~l~~~m~~-----~g~~p--------d~~t~~~ll 419 (784)
...+..... + +...|......+.. .|++++|+..|+++.. ..-.| +..++..+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 222222221 1 23455555555554 8999999999999987 32122 345677788
Q ss_pred HHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHH
Q 044131 420 SACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLE 496 (784)
Q Consensus 420 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~ 496 (784)
..+...|+++.|...+..+.+.... ..++..+...|.+.|++++|...|+++.. .+...|..+...|...|++++
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHH
Confidence 8899999999999999999987633 88889999999999999999999998753 467899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 044131 497 ALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL- 575 (784)
Q Consensus 497 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m- 575 (784)
|+..|+++.+.. +.+..++..+...+...|++++|..+|+.+.+.. +.+...+..+...+.+.|++++|.+.++++
T Consensus 323 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 399 (514)
T 2gw1_A 323 AGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399 (514)
T ss_dssp HHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 999999999863 3356788889999999999999999999998642 224678899999999999999999999876
Q ss_pred ---CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 576 ---AVEPG----PAVWGALLGACMI---HKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 576 ---~~~p~----~~~~~~ll~a~~~---~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|-.|+ ..+|..+...+.. .|+++.|...++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 22333 4489999999999 99999999999999999999999999999999999999999999988776
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.87 E-value=1.1e-19 Score=205.41 Aligned_cols=419 Identities=12% Similarity=0.046 Sum_probs=237.9
Q ss_pred cccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHH
Q 044131 174 TVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVS 253 (784)
Q Consensus 174 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~ 253 (784)
...|..+...+.+.|++++|++.|+++... .+.+..++..+..++...|+++.|.+.+..+++.. +.+...+..+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~ 101 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 345677777888888888888888888764 23355677777777788888888888888887765 346778888889
Q ss_pred HHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHc------CCCCChhhHHhHHHhhcCCCCh
Q 044131 254 FYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLAS------AERVNSSTIVGLIPVFYPFGHL 327 (784)
Q Consensus 254 ~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~t~~~ll~~~~~~~~~ 327 (784)
.|.+.|++++|...|+.+ ..+....+..+..+...+...+|+..++++... ...|+...+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----------- 169 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----------- 169 (537)
T ss_dssp HHHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH-----------
T ss_pred HHHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH-----------
Confidence 999999999999999744 323333344455666666778888888888543 12233322222
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChh---HHHHHHHHHHh--------CCChhHH
Q 044131 328 HLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLA---SWNAMIAGYTQ--------NGLTEEA 396 (784)
Q Consensus 328 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~---~~~~li~~~~~--------~g~~~~A 396 (784)
|....+.+.+...+......+.. .+..+...+.. .|++++|
T Consensus 170 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 170 ----------------------------FFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp ----------------------------HHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred ----------------------------HHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 22333334444444333332221 22222222111 1245555
Q ss_pred HHHHHHHHhCCCCCC--------HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHH
Q 044131 397 ISLFQEMQASKVAPN--------PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARE 468 (784)
Q Consensus 397 ~~l~~~m~~~g~~pd--------~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 468 (784)
+.+|+++... .|+ ..++..+...+...|+++.|...+..+.+.. |+..++..+...|.+.|++++|..
T Consensus 222 ~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 297 (537)
T 3fp2_A 222 TDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFK 297 (537)
T ss_dssp HHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHH
T ss_pred HHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHH
Confidence 5555555543 222 1123333344445555556665555555543 234555555555666666666666
Q ss_pred HHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC
Q 044131 469 LFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGF 545 (784)
Q Consensus 469 ~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~ 545 (784)
.|+++. ..+..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|.++|+.+.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--- 373 (537)
T 3fp2_A 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--- 373 (537)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 665543 2345556666666666666666666666666532 223445555666666666666666666666543
Q ss_pred CCC-cchHHHHHHHHHhcCCHHHHHHHHHhC----C----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHH
Q 044131 546 KPL-AEHYACMVDILGRAGQLEKALEFIKGL----A----VEPGPAVWGALLGACMIH----------KDTNLARVASEK 606 (784)
Q Consensus 546 ~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m----~----~~p~~~~~~~ll~a~~~~----------g~~~~a~~~~~~ 606 (784)
.|+ ...+..+...+.+.|++++|.+.++++ | .......+..+...+... |+++.|...+++
T Consensus 374 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 453 (537)
T 3fp2_A 374 FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453 (537)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHH
Confidence 232 445566666666666666666666553 1 011122233334445555 667777777777
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 607 LFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 607 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 454 a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 454 ACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 7777777776777777777777777777776666544
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.86 E-value=3.6e-19 Score=196.56 Aligned_cols=295 Identities=11% Similarity=0.040 Sum_probs=240.7
Q ss_pred CcchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044131 343 VSNSSVLTALSTVYSRLNEMEAARKLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSIL 419 (784)
Q Consensus 343 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 419 (784)
+.+...+..+...|.+.|++++|..+|+.+. ..+..+|..+...|.+.|++++|+..|+++...+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 4456677777888888888888888887654 3466778888888888888888888888877653 33466777777
Q ss_pred HHHhhhCchHHHHHHHHHHHHcCCCCch---hhHhHH------------HHHHHhcCCHHHHHHHHhhcC---CCCHHHH
Q 044131 420 SACAQLGAISLGKWVHELVKSRNFESNI---YVSTAL------------IDMYAKCGNIVEARELFDLMS---HKSEVTW 481 (784)
Q Consensus 420 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~---~~~~~L------------i~~y~k~g~~~~A~~~f~~~~---~~~~~~~ 481 (784)
.++...|++++|...+..+.+.. +.+. ..+..+ ...|.+.|++++|...|+++. ..+...|
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 180 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELR 180 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 78888888888888888877654 2333 444444 445899999999999999876 3578899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHH-----
Q 044131 482 NTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACM----- 555 (784)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l----- 555 (784)
..+...|.+.|++++|++.|+++.+.. +.+..++..+...+...|++++|..+|+.+.+. .|+ ...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHH
Confidence 999999999999999999999998853 456788999999999999999999999999843 555 3444444
Q ss_pred -------HHHHHhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 556 -------VDILGRAGQLEKALEFIKGL-AVEPG-----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 556 -------v~~l~r~g~~~eA~~~~~~m-~~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
...+.+.|++++|.+.++++ ...|+ ...|..+..++...|+++.|...++++++++|+++..+..++
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 88999999999999999887 24454 447888899999999999999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 044131 623 NIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 623 ~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.+|...|++++|.+.++...+
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999999998876
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.84 E-value=1.3e-18 Score=196.60 Aligned_cols=435 Identities=9% Similarity=-0.032 Sum_probs=275.9
Q ss_pred HHHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcc
Q 044131 147 AALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEV 223 (784)
Q Consensus 147 ~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~ 223 (784)
..+...|.+.|++++|.+.|++... .+..+|..+..+|.+.|++++|++.|++.... -+.+..++..+..++...
T Consensus 29 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 29 KNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHc
Confidence 3344444455555555555544431 23444555555555555555555555555433 122233444444555555
Q ss_pred cchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCC------CeeeHHHHHHHHHhCCCchHHHH
Q 044131 224 QELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRP------DLISCNAMISGYTCNGKTESSLR 297 (784)
Q Consensus 224 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~------d~~~~~~li~~~~~~g~~~~A~~ 297 (784)
|++++|...+. .+.. .|+ ..+..+..+...+....|...++.+... .....+..+..+....+.+.++.
T Consensus 107 g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 107 GNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp TCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred CCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 55555555553 2211 111 1112233344444455666666665331 22223444555555555555544
Q ss_pred HHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC--
Q 044131 298 LFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEK-- 375 (784)
Q Consensus 298 l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~-- 375 (784)
.+...... .+....+...+...... . .-......|++++|..+|+.+...
T Consensus 182 ~~~~~~~~--~~~~~~~~~~l~~~~~~--------------------~------~~~~~~a~~~~~~A~~~~~~~l~~~p 233 (537)
T 3fp2_A 182 SVNTSSNY--DTAYALLSDALQRLYSA--------------------T------DEGYLVANDLLTKSTDMYHSLLSANT 233 (537)
T ss_dssp TSCCCCSS--CSSHHHHHHHHHHHHTC--------------------S------HHHHHHHHHHHHHHHHHHHHHHC--C
T ss_pred HHhhcccc--ccHHHHHHHHHHHHHHh--------------------h------hhhhHHHHHHHHHHHHHHHHHHHHCC
Confidence 43332111 11111111111100000 0 000111234677777777766543
Q ss_pred -C-------hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCch
Q 044131 376 -S-------LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNI 447 (784)
Q Consensus 376 -~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~ 447 (784)
+ ..+|..+...+...|++++|+..|++.... .|+...+..+...+...|+++.|...+..+.+.. +.+.
T Consensus 234 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 310 (537)
T 3fp2_A 234 VDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYP 310 (537)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCH
T ss_pred CcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCH
Confidence 2 224666777888899999999999999875 5667888888889999999999999999998875 5567
Q ss_pred hhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044131 448 YVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACS 524 (784)
Q Consensus 448 ~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 524 (784)
.++..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+.
T Consensus 311 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 311 PTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 889999999999999999999999875 3467899999999999999999999999999863 445668888999999
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhc----------CCHHHHHHHHHhCC-CCC-CHHHHHHHH
Q 044131 525 HAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRA----------GQLEKALEFIKGLA-VEP-GPAVWGALL 588 (784)
Q Consensus 525 ~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~----------g~~~eA~~~~~~m~-~~p-~~~~~~~ll 588 (784)
..|++++|.+.|+.+.+...-.+. ...+......|.+. |++++|...+++.- ..| +..+|..+.
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 469 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLA 469 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 999999999999998754321122 12244556777777 99999999998873 344 577999999
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCcchHHH
Q 044131 589 GACMIHKDTNLARVASEKLFELDPENVGYHVL 620 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 620 (784)
..+...|+.+.|...+++++++.|+++.....
T Consensus 470 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 470 QLKLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 99999999999999999999999998766543
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=1.5e-16 Score=169.19 Aligned_cols=291 Identities=11% Similarity=0.027 Sum_probs=199.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 044131 347 SVLTALSTVYSRLNEMEAARKLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACA 423 (784)
Q Consensus 347 ~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 423 (784)
..+..+...|.+.|++++|...|+... ..+...|..+...|...|++++|+..|+++.... +.+...+..+...+.
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 334445555555555555555555432 2234455555555555555555555555555431 123445555555555
Q ss_pred hhCchHHHHHHHHHHHHcCCC---CchhhHhHH------------HHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHH
Q 044131 424 QLGAISLGKWVHELVKSRNFE---SNIYVSTAL------------IDMYAKCGNIVEARELFDLMS---HKSEVTWNTMI 485 (784)
Q Consensus 424 ~~~~~~~a~~i~~~~~~~g~~---~~~~~~~~L------------i~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li 485 (784)
..|+++.|...+..+.+.. + .+...+..+ ...|...|++++|...|+++. ..+...|..+.
T Consensus 83 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 5555555555555555432 1 223333333 567888888888888888765 34677888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHH-----------
Q 044131 486 SGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYA----------- 553 (784)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~----------- 553 (784)
..|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+...+. .|+ ...+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHH
Confidence 88888888888888888888753 446677888888888888888888888888754 344 22222
Q ss_pred -HHHHHHHhcCCHHHHHHHHHhCC-CCCC-HH----HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 554 -CMVDILGRAGQLEKALEFIKGLA-VEPG-PA----VWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 554 -~lv~~l~r~g~~~eA~~~~~~m~-~~p~-~~----~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
.+...+.+.|++++|.+.+++.. ..|+ .. .|..+..++...|+++.|...++++++++|+++..+..++.+|.
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYL 317 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 23667889999999999988762 3343 32 35557778889999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHh
Q 044131 627 AERDYLQAATVRQVVKK 643 (784)
Q Consensus 627 ~~g~~~~a~~~~~~m~~ 643 (784)
..|++++|.+.++...+
T Consensus 318 ~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 318 IEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HTTCHHHHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHHHHh
Confidence 99999999999988775
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.79 E-value=1e-16 Score=170.39 Aligned_cols=307 Identities=12% Similarity=0.048 Sum_probs=228.7
Q ss_pred eeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHH
Q 044131 277 ISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVY 356 (784)
Q Consensus 277 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 356 (784)
..|..+...+.+.|++++|+..|+++.... +.+..++..+...|
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~------------------------------------p~~~~~~~~~a~~~ 47 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGD------------------------------------PDNYIAYYRRATVF 47 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------------------------------------cccHHHHHHHHHHH
Confidence 345666677777888888888888776542 22334455555666
Q ss_pred HhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC---C-HHHHHHH-----------
Q 044131 357 SRLNEMEAARKLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAP---N-PVTVSSI----------- 418 (784)
Q Consensus 357 ~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---d-~~t~~~l----------- 418 (784)
...|++++|...|++.. ..+...|..+...|.+.|++++|+..|++.... .| + ...+..+
T Consensus 48 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (359)
T 3ieg_A 48 LAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRS 125 (359)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHH
Confidence 66666666666666543 234456666667777777777777777776653 34 2 2222222
Q ss_pred -HHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCH
Q 044131 419 -LSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHG 494 (784)
Q Consensus 419 -l~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 494 (784)
...+...|+++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+...|..+...|...|++
T Consensus 126 ~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 126 QALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 456778888888888888888765 5567788888999999999999999998765 34678899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCH-HHHH------------HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCc-----chHHHHH
Q 044131 495 LEALQLFSEMLHSGIRPSG-VTFL------------SVLYACSHAGLVREGDEIFQSMIHDHGFKPLA-----EHYACMV 556 (784)
Q Consensus 495 ~~A~~~~~~m~~~g~~pd~-~t~~------------~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~lv 556 (784)
++|+..|++..+. .|+. ..+. .+...+...|++++|...|+.+.+. .|+. ..+..+.
T Consensus 205 ~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la 279 (359)
T 3ieg_A 205 ELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERIC 279 (359)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHH
Confidence 9999999999874 3443 2222 3356688999999999999999865 3442 3355688
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 557 DILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
..+...|++++|.+.+++.- ..| ++.+|..+...+...|+++.|...++++++++|+++..+..|..++..
T Consensus 280 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 280 HCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 89999999999999998863 345 677999999999999999999999999999999999988888777654
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.79 E-value=2.2e-14 Score=167.49 Aligned_cols=551 Identities=13% Similarity=0.083 Sum_probs=371.6
Q ss_pred CCCChhhHhHHHHHhhCCCChhHHHHHhccCCC---------------CCcc---------h-------------HHHHH
Q 044131 37 FQNDLSTVTKLAHRLSDFKATCYARALFFSIPK---------------PDLF---------L-------------FNVII 79 (784)
Q Consensus 37 ~~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~---------------~~~~---------~-------------~~~li 79 (784)
+..|+.+....|.+.++.|.+.+..++-.+-+. +|.. . ....|
T Consensus 721 ~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~flk~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~i 800 (1630)
T 1xi4_A 721 FSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYI 800 (1630)
T ss_pred ccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHHhhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHH
Confidence 456888899999999999999988888765211 1110 0 11224
Q ss_pred HHHhcCCCchhHHHHHHHHHhhCCCCC-----------CcccHHHHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHH
Q 044131 80 RGFSNNEMPKSSICFYTHLRKNTALTP-----------DNFTYSFVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAA 148 (784)
Q Consensus 80 ~~~~~~g~~~~a~~~~~~~m~~~~~~p-----------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~ 148 (784)
..|++.-++..+-. +...+.+..... +.....-|+..+-+.+++...+..++.-+..| ..|+.++|+
T Consensus 801 e~yv~~vnp~~~p~-Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hna 878 (1630)
T 1xi4_A 801 EIYVQKVNPSRLPV-VIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNA 878 (1630)
T ss_pred HHHHhccCCcccch-hhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHH
Confidence 44444333333322 222222211111 11113334444445555555666666666667 668899999
Q ss_pred HHHHhhcCCChHHHHHHhccC------------CCCCccc----------HHHHHHHHHcCCCchH-HHHHHHH------
Q 044131 149 LVDLYFKFSWVKSARKVFDKM------------PEKDTVL----------WNSMISGLMKNCCFQD-SIWVFGD------ 199 (784)
Q Consensus 149 li~~y~~~g~~~~A~~~f~~~------------~~~~~~~----------~~~li~~~~~~g~~~~-A~~l~~~------ 199 (784)
|...|...+.-.+ +.+.+= .++|+.. -.-||...-+++.++. |.-+.++
T Consensus 879 lakiyid~n~npe--~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW 956 (1630)
T 1xi4_A 879 LAKIYIDSNNNPE--RFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELW 956 (1630)
T ss_pred HHHHHhccCCCHH--HHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHH
Confidence 9999986543222 111111 1223211 2234444444444432 2222211
Q ss_pred ---------HH--------HcC-CCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcC
Q 044131 200 ---------MV--------RNG-GTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLG--FHDHVYVLTGLVSFYSKCG 259 (784)
Q Consensus 200 ---------m~--------~~~-g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g--~~~~~~~~~~li~~y~~~g 259 (784)
|+ ... .-.-|+.-.....+++...|...++.++++.++..+ +..+....+.|+.+..+.
T Consensus 957 ~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka- 1035 (1630)
T 1xi4_A 957 GSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA- 1035 (1630)
T ss_pred HHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-
Confidence 11 000 011223334567788888899999999999888432 123456677777777776
Q ss_pred ChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHH
Q 044131 260 EVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLK 339 (784)
Q Consensus 260 ~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~ 339 (784)
+..+...+.++...-+ ...+...+...|.+++|..+|++.. -.......++. ..++++.|.++...+
T Consensus 1036 D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv-- 1102 (1630)
T 1xi4_A 1036 DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC-- 1102 (1630)
T ss_pred ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc--
Confidence 5566666655554333 4557788889999999999999852 11111222222 567788888877654
Q ss_pred hCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 044131 340 SGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSIL 419 (784)
Q Consensus 340 ~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll 419 (784)
.+..+|..+..++.+.|++++|...|.+. .|...|.-++..+.+.|++++|++.|...++.. ++....+.+.
T Consensus 1103 ----n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~La 1174 (1630)
T 1xi4_A 1103 ----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 1174 (1630)
T ss_pred ----CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHH
Confidence 45788999999999999999999999664 677788889999999999999999998877654 3333334588
Q ss_pred HHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 044131 420 SACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQ 499 (784)
Q Consensus 420 ~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 499 (784)
.+|++.++++....+. + .++...+..+.+.|...|++++|...|... ..|..+...|.+.|++++|++
T Consensus 1175 faYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHH
Confidence 8899998888544442 2 345556667999999999999999999985 489999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 044131 500 LFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVE 578 (784)
Q Consensus 500 ~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~ 578 (784)
.+++. .|..+|..+-.+|...|.+..|...... +..+.+.+..++..|.+.|.++||..+++.. .++
T Consensus 1243 aarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1243 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 99976 4568899999999999999999887654 3346677889999999999999999999775 455
Q ss_pred CCH-HHHHHHHHHHHh--cCCHHHHHHHHHHHhcCCC-----CCcchHHHHHHHHHhcCChHHHHHH
Q 044131 579 PGP-AVWGALLGACMI--HKDTNLARVASEKLFELDP-----ENVGYHVLLSNIYSAERDYLQAATV 637 (784)
Q Consensus 579 p~~-~~~~~ll~a~~~--~g~~~~a~~~~~~~~~l~p-----~~~~~~~~l~~~y~~~g~~~~a~~~ 637 (784)
|.. ..|.-|..++.+ -+++.++.+.|..-..+.| ++...|.-+.-+|.+.|+|+.|...
T Consensus 1311 raH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1311 RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 543 367666655555 4577788888888777777 7778899999999999999999853
No 16
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=1.9e-17 Score=174.55 Aligned_cols=223 Identities=11% Similarity=0.073 Sum_probs=89.4
Q ss_pred hCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHH
Q 044131 52 SDFKATCYARALFFSIPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLH 131 (784)
Q Consensus 52 ~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 131 (784)
-++|++++|...+++++.|+ +|..|..++.+.|++++|++ .|.+ .+|..+|..++.+|...|++++|...+
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAId-sfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl 84 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAID-SYIK------ADDPSSYMEVVQAANTSGNWEELVKYL 84 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHH-HHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 37899999999999998775 89999999999999999999 8864 378889999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChh
Q 044131 132 GHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDST 211 (784)
Q Consensus 132 ~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~ 211 (784)
....+. .+++.+.+.|+.+|.|+|+++++.++|+. |+..+|+.+...|...|++++|...|..+ .
T Consensus 85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----------~ 149 (449)
T 1b89_A 85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------S 149 (449)
T ss_dssp --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT----------T
T ss_pred HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh----------h
Confidence 888875 56688899999999999999999998864 77789999999999999999999999976 3
Q ss_pred hHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCC
Q 044131 212 SVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGK 291 (784)
Q Consensus 212 t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~ 291 (784)
.|..+..++.+.|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 6888888888888888888888776 377888888888888888888877776654 333334467788888888
Q ss_pred chHHHHHHHHHHHc
Q 044131 292 TESSLRLFRQLLAS 305 (784)
Q Consensus 292 ~~~A~~l~~~m~~~ 305 (784)
+++|+.+++..+..
T Consensus 223 ~eEai~lLe~aL~l 236 (449)
T 1b89_A 223 FEELITMLEAALGL 236 (449)
T ss_dssp HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCC
Confidence 88888888887644
No 17
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.77 E-value=2.2e-17 Score=174.18 Aligned_cols=323 Identities=14% Similarity=0.081 Sum_probs=161.4
Q ss_pred HhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHH
Q 044131 256 SKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHS 335 (784)
Q Consensus 256 ~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~ 335 (784)
-+.|++++|.++++++..|+ +|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|+++++...+.
T Consensus 14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 37789999999999996664 9999999999999999999999763 688899999999999999999999888
Q ss_pred HHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHH
Q 044131 336 FCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTV 415 (784)
Q Consensus 336 ~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~ 415 (784)
..++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|.+++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 88874 55688999999999999999999988864 67789999999999999999999999977 368
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHH
Q 044131 416 SSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGL 495 (784)
Q Consensus 416 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 495 (784)
..+..++.++|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+++
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 89999999999999999999988 378999999999999999999988877765 44444557999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC------CcchHHHHHHHHHhcCCHHH
Q 044131 496 EALQLFSEMLHSGIRPSGV--TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP------LAEHYACMVDILGRAGQLEK 567 (784)
Q Consensus 496 ~A~~~~~~m~~~g~~pd~~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~lv~~l~r~g~~~e 567 (784)
+|+.+++...... +--.. |...++.+-.+.+++.+.++.|.+- -+++| +..+|.-++-+|...++++.
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~---ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~ 300 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKYEEYDN 300 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence 9999999987543 22233 4445555555567777777777643 36666 47899999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 568 ALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 568 A~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
|...+-+-| |+..--..+.....+-.|.|.--++..-.++-.|.
T Consensus 301 A~~tm~~h~--~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~~p~ 344 (449)
T 1b89_A 301 AIITMMNHP--TDAWKEGQFKDIITKVANVELYYRAIQFYLEFKPL 344 (449)
T ss_dssp HHHHHHHST--TTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhCC--hhhhhhHHHHHHHhchhHHHHHHHHHHHHHhcCHH
Confidence 998775543 33223334444555666666666665555554443
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=2e-16 Score=166.26 Aligned_cols=287 Identities=12% Similarity=0.044 Sum_probs=229.6
Q ss_pred CCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 044131 342 IVSNSSVLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSI 418 (784)
Q Consensus 342 ~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~l 418 (784)
.+.+..+...+...+...|++++|.++|+++.. .+...+..++..+.+.|++++|+.+|+++.... +.+...+..+
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 345566677777888888888888888887643 345567777888888899999999998888752 2345677777
Q ss_pred HHHHhhhC-chHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCH
Q 044131 419 LSACAQLG-AISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHG 494 (784)
Q Consensus 419 l~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~ 494 (784)
...+...| +++.|.+.+..+.+.. +.+...+..+...|...|++++|...|+++. ..+...|..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 78888888 8888999988888764 4467788889999999999999999998875 33567788888999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCC-------CCCcchHHHHHHHHHhcCCHHH
Q 044131 495 LEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGF-------KPLAEHYACMVDILGRAGQLEK 567 (784)
Q Consensus 495 ~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~-------~p~~~~~~~lv~~l~r~g~~~e 567 (784)
++|++.|++..+.. +.+...+..+...+...|++++|..+|+...+...- ......+..+...|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999998853 445677888888999999999999999988754211 2336788899999999999999
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHH-HhcCCh
Q 044131 568 ALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIY-SAERDY 631 (784)
Q Consensus 568 A~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y-~~~g~~ 631 (784)
|.+.+++.. ..| +..+|..+...+...|+++.|...++++++++|+++..+..++.+| ...|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 999998762 333 5678999999999999999999999999999999999999999988 455554
No 19
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=3.7e-13 Score=157.42 Aligned_cols=471 Identities=13% Similarity=0.051 Sum_probs=311.7
Q ss_pred CCChhhHhHHHHHhhCCCChhHHHHHhccC------------CCCCcch----------HHHHHHHHhcCCCchhHHHHH
Q 044131 38 QNDLSTVTKLAHRLSDFKATCYARALFFSI------------PKPDLFL----------FNVIIRGFSNNEMPKSSICFY 95 (784)
Q Consensus 38 ~~~~~~~~~l~~~y~~~g~~~~A~~~f~~~------------~~~~~~~----------~~~li~~~~~~g~~~~a~~~~ 95 (784)
..|..++|+|...|...++-. .+.+.+= .++|... -.-||...-+++.+...-+++
T Consensus 870 ~~~~~~hnalakiyid~n~np--e~fL~~n~~yd~~~vgkyce~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~aryl 947 (1630)
T 1xi4_A 870 CEEPATHNALAKIYIDSNNNP--ERFLRENPYYDSRVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYL 947 (1630)
T ss_pred CCCHHHHHHHHHHHhccCCCH--HHHhhccCcccHHHHHHHHHhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHH
Confidence 457889999999998765422 2322221 1122211 112344444444333322212
Q ss_pred HHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHHhCC--CCchhHHHHHHHHhhcCCChHHHHHHhccCCC-C
Q 044131 96 THLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIVSGY--GSDLFVGAALVDLYFKFSWVKSARKVFDKMPE-K 172 (784)
Q Consensus 96 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~-~ 172 (784)
.++ -|...|+.+|.- +-+--+++.++.....+ ..|+.--...+..|...|...+|.+++++..- +
T Consensus 948 v~r-------~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~ 1015 (1630)
T 1xi4_A 948 VRR-------KDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN 1015 (1630)
T ss_pred HHh-------cCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 221 345556665521 11223345555444432 22334446667778888888888888888762 2
Q ss_pred -----CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhH
Q 044131 173 -----DTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYV 247 (784)
Q Consensus 173 -----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~ 247 (784)
+...-|.++.+..+. +..+..+...+... ....-+...|...|.+++|.++++..- .....
T Consensus 1016 s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~--------~d~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A 1081 (1630)
T 1xi4_A 1016 SVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN--------YDAPDIANIAISNELFEEAFAIFRKFD-----VNTSA 1081 (1630)
T ss_pred CcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh--------ccHHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHH
Confidence 224456677666665 44555555544431 123346677778888888888888751 11111
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCCh
Q 044131 248 LTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHL 327 (784)
Q Consensus 248 ~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 327 (784)
.+.+ +-..|++++|.++.++... ..+|..+..++.+.|++++|++.|.+. -|...|..+..+|.+.|++
T Consensus 1082 ~~VL---ie~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGky 1150 (1630)
T 1xi4_A 1082 VQVL---IEHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNW 1150 (1630)
T ss_pred HHHH---HHHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCH
Confidence 2223 2277888888888887743 567888888999999999999988653 4667788888888899999
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 044131 328 HLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASK 407 (784)
Q Consensus 328 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 407 (784)
+++.+.+....+.. +++.+.+.++..|++.+++++..... ..++...|..+...|...|++++|..+|...
T Consensus 1151 EEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---- 1221 (1630)
T 1xi4_A 1151 EELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 1221 (1630)
T ss_pred HHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----
Confidence 99988888877765 44444556888888888888644442 4556667777888888889999999988874
Q ss_pred CCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHH
Q 044131 408 VAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISG 487 (784)
Q Consensus 408 ~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~ 487 (784)
..|..+...+.++|+++.|.+..+.+ .+..+|..+-.++...|++..|...... ...+...+..++.-
T Consensus 1222 -----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~y 1289 (1630)
T 1xi4_A 1222 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINY 1289 (1630)
T ss_pred -----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHH
Confidence 37888888888888888888888766 3557777777788888888888887765 33455566688888
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC------CcchHHHHHHH
Q 044131 488 YGLHGHGLEALQLFSEMLHSGIRPSG---VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP------LAEHYACMVDI 558 (784)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~pd~---~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p------~~~~~~~lv~~ 558 (784)
|...|.+++|+.+++..+.. .|.. .|...++.+-.+.+++.++.++|.+-. +++| +..+|.-++-+
T Consensus 1290 Ye~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhlk~f~~ri---ni~k~~r~~e~~~lW~elv~L 1364 (1630)
T 1xi4_A 1290 YQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHLELFWSRV---NIPKVLRAAEQAHLWAELVFL 1364 (1630)
T ss_pred HHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---ccchHhHHHHHHHHHHHHHHH
Confidence 88999999999999877653 3332 334555566666777777777777543 5554 36778889999
Q ss_pred HHhcCCHHHHHHHHH
Q 044131 559 LGRAGQLEKALEFIK 573 (784)
Q Consensus 559 l~r~g~~~eA~~~~~ 573 (784)
|.+.|+++.|...+-
T Consensus 1365 Y~~~~e~dnA~~tm~ 1379 (1630)
T 1xi4_A 1365 YDKYEEYDNAIITMM 1379 (1630)
T ss_pred HHhcccHHHHHHHHH
Confidence 999999998885543
No 20
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.73 E-value=5.3e-15 Score=166.91 Aligned_cols=127 Identities=10% Similarity=0.005 Sum_probs=72.5
Q ss_pred CcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHH
Q 044131 173 DTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLV 252 (784)
Q Consensus 173 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li 252 (784)
|...|..++. +.+.|++++|..+|+++.+. .+-+...|...+..+.+.|+.+.|+.+++.+++.. |++..|..++
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHH
Confidence 5667777777 46777888888888887743 22233355566666666666666666666666543 4555555555
Q ss_pred H-HHHhcCChHHHHH----HHhcCC------CCCeeeHHHHHHHHHh---------CCCchHHHHHHHHHHH
Q 044131 253 S-FYSKCGEVERAEL----LFRDIV------RPDLISCNAMISGYTC---------NGKTESSLRLFRQLLA 304 (784)
Q Consensus 253 ~-~y~~~g~~~~A~~----~f~~~~------~~d~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~ 304 (784)
. .+...|+.+.|++ +|++.. ..+...|...+....+ .|++++|..+|++.+.
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 4 2234455555543 444331 1234455555554433 4556666666666554
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.73 E-value=8.7e-15 Score=163.38 Aligned_cols=365 Identities=10% Similarity=0.013 Sum_probs=269.0
Q ss_pred chhHHHHHHHHHHh----cCChHHHHHHHhcCCC-CCeeeHHHHHHHHHh----CCCchHHHHHHHHHHHcCCCCChhhH
Q 044131 244 HVYVLTGLVSFYSK----CGEVERAELLFRDIVR-PDLISCNAMISGYTC----NGKTESSLRLFRQLLASAERVNSSTI 314 (784)
Q Consensus 244 ~~~~~~~li~~y~~----~g~~~~A~~~f~~~~~-~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~ 314 (784)
++.....|..+|.. .+++++|...|++..+ .+...+..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44445555555555 5666666666655422 344455555556665 666666666666666554 33344
Q ss_pred HhHHHhhcC----CCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHh----cCCHHHHHHHHhhcCC-CChhHHHHHHH
Q 044131 315 VGLIPVFYP----FGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSR----LNEMEAARKLFDESSE-KSLASWNAMIA 385 (784)
Q Consensus 315 ~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~-~~~~~~~~li~ 385 (784)
..+-..+.. .++.+.|...+....+.| +...+..|..+|.. .++.++|.+.|++..+ .+..++..+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~ 191 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGY 191 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444444444 566777777777766654 45667777777876 7888999988887543 46778888888
Q ss_pred HHHh----CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHH
Q 044131 386 GYTQ----NGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQ----LGAISLGKWVHELVKSRNFESNIYVSTALIDMY 457 (784)
Q Consensus 386 ~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 457 (784)
.|.+ .++.++|++.|++....| +...+..+...+.. .++.++|...+....+.+ +...+..|..+|
T Consensus 192 ~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y 265 (490)
T 2xm6_A 192 MYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYIL 265 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHH
T ss_pred HHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 8887 789999999999888764 55666666666665 778999999999888765 455677778888
Q ss_pred Hh----cCCHHHHHHHHhhcCC-CCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044131 458 AK----CGNIVEARELFDLMSH-KSEVTWNTMISGYGLH-----GHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAG 527 (784)
Q Consensus 458 ~k----~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 527 (784)
.. .++.++|...|++..+ .+..++..+...|... ++.++|+..|++..+.| +...+..+...+...|
T Consensus 266 ~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g 342 (490)
T 2xm6_A 266 EQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLG 342 (490)
T ss_dssp HHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSC
T ss_pred HCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC
Confidence 87 8999999999988764 4677888888888887 89999999999999875 4456666777777666
Q ss_pred ---CHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCC
Q 044131 528 ---LVREGDEIFQSMIHDHGFKPLAEHYACMVDILGR----AGQLEKALEFIKGLAVEPGPAVWGALLGACMI----HKD 596 (784)
Q Consensus 528 ---~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~g~ 596 (784)
+.++|.++|+...+. .+...+..+..+|.. .+++++|.+++++..-..++..+..|...+.. .+|
T Consensus 343 ~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 343 SEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp CHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC
T ss_pred CcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCC
Confidence 789999999998753 357788888888888 89999999999887434467788889888887 899
Q ss_pred HHHHHHHHHHHhcCCCC---CcchHHHHHHHHHh
Q 044131 597 TNLARVASEKLFELDPE---NVGYHVLLSNIYSA 627 (784)
Q Consensus 597 ~~~a~~~~~~~~~l~p~---~~~~~~~l~~~y~~ 627 (784)
.++|...++++.+.+|+ ++.....|+.++..
T Consensus 419 ~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 99999999999999854 67777777766554
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=9.4e-16 Score=161.04 Aligned_cols=263 Identities=11% Similarity=0.030 Sum_probs=227.2
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHH
Q 044131 375 KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALI 454 (784)
Q Consensus 375 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 454 (784)
.+...+..+...+...|++++|+++|+++.... +.+...+..+...+...|++++|..++..+.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 355677788888999999999999999998753 3344566667788899999999999999999875 55788899999
Q ss_pred HHHHhcC-CHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 044131 455 DMYAKCG-NIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVR 530 (784)
Q Consensus 455 ~~y~k~g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~ 530 (784)
..|...| ++++|...|++..+ .+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999998763 467799999999999999999999999999853 334567777889999999999
Q ss_pred HHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-C----------CCCHHHHHHHHHHHHhcCCHH
Q 044131 531 EGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-V----------EPGPAVWGALLGACMIHKDTN 598 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~----------~p~~~~~~~ll~a~~~~g~~~ 598 (784)
+|.++|+...+ +.|+ ...+..+...+.+.|++++|.+.+++.. . +.+..+|..+..++...|+++
T Consensus 177 ~A~~~~~~al~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 177 LAERFFSQALS---IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHT---TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHH---hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999874 3454 6788999999999999999999997752 1 334679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 599 LARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 599 ~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.|...+++++++.|+++..+..++.+|...|++++|.+.++...+
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999886543
No 23
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.71 E-value=2.9e-14 Score=160.81 Aligned_cols=392 Identities=10% Similarity=0.022 Sum_probs=245.2
Q ss_pred hhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCC--CCeeeHHHHHH-HH
Q 044131 210 STSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVR--PDLISCNAMIS-GY 286 (784)
Q Consensus 210 ~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~--~d~~~~~~li~-~~ 286 (784)
...|..++.. ...|+++.++.+++.+++. .+.+...|..++..+.+.|++++|+.+|++... |++..|...+. ..
T Consensus 13 ~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~ 90 (530)
T 2ooe_A 13 LDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVR 90 (530)
T ss_dssp HHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 3455555553 4556666666666666653 233555666666666666666666666666543 44444554443 22
Q ss_pred HhCCCchHHHH----HHHHHHHc-CCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHh---
Q 044131 287 TCNGKTESSLR----LFRQLLAS-AERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSR--- 358 (784)
Q Consensus 287 ~~~g~~~~A~~----l~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~--- 358 (784)
...|+.++|.+ +|++.+.. |..|+ +..+|...+....+
T Consensus 91 ~~~~~~~~a~~~~~~~~~~al~~~g~~~~----------------------------------~~~~w~~~~~~~~~~~~ 136 (530)
T 2ooe_A 91 ETKGKLPSYKEKMAQAYDFALDKIGMEIM----------------------------------SYQIWVDYINFLKGVEA 136 (530)
T ss_dssp HHTTTSTTHHHHHHHHHHHHHHHTTTSTT----------------------------------CHHHHHHHHHHHHHSCC
T ss_pred HHccchhhHHHHHHHHHHHHHHHCCCCcc----------------------------------cHHHHHHHHHHHhcCCC
Confidence 23455555544 44433322 33322 23334444333332
Q ss_pred ------cCCHHHHHHHHhhcCC-CC---hhHHHHHHHHH-------------HhCCChhHHHHHHHHHH------hCC--
Q 044131 359 ------LNEMEAARKLFDESSE-KS---LASWNAMIAGY-------------TQNGLTEEAISLFQEMQ------ASK-- 407 (784)
Q Consensus 359 ------~g~~~~A~~~f~~~~~-~~---~~~~~~li~~~-------------~~~g~~~~A~~l~~~m~------~~g-- 407 (784)
.|+++.|+++|++... |. ...|....... .+.+++.+|..++.++. ...
T Consensus 137 ~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~ 216 (530)
T 2ooe_A 137 VGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAP 216 (530)
T ss_dssp CSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred cccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence 4555555555555332 11 11222211100 12345666766666532 111
Q ss_pred -CCCCH--------HHHHHHHHHHhh----hCch----HHHHHHHHHHHHcCCCCchhhHhHHHHHHHh-------cCCH
Q 044131 408 -VAPNP--------VTVSSILSACAQ----LGAI----SLGKWVHELVKSRNFESNIYVSTALIDMYAK-------CGNI 463 (784)
Q Consensus 408 -~~pd~--------~t~~~ll~a~~~----~~~~----~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k-------~g~~ 463 (784)
+.|+. ..|...+..... .++. +.+..+++.+++.. +.+..+|..++..+.+ .|++
T Consensus 217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~ 295 (530)
T 2ooe_A 217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDM 295 (530)
T ss_dssp CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccch
Confidence 24431 233333322221 1122 35667788887763 5567888888888775 6888
Q ss_pred H-------HHHHHHhhcCC---C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCCHH
Q 044131 464 V-------EARELFDLMSH---K-SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG--VTFLSVLYACSHAGLVR 530 (784)
Q Consensus 464 ~-------~A~~~f~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~t~~~ll~a~~~~g~~~ 530 (784)
+ +|+.+|++..+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|...+..+.+.|+++
T Consensus 296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~ 373 (530)
T 2ooe_A 296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIK 373 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHH
Confidence 7 89999988753 3 577999999999999999999999999998 45653 46888888888899999
Q ss_pred HHHHHHHHhHHhcCCCCC-cchHHHHHHH-HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPL-AEHYACMVDI-LGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEK 606 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~-~~~~~~lv~~-l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~ 606 (784)
+|.++|+...+ ..|. ...|...+.+ +...|+.++|..++++. ...| ++.+|..++......|+.+.|..++++
T Consensus 374 ~A~~~~~~Al~---~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 374 SGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp HHHHHHHHHHT---CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHh---ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 99999998874 3444 2333322222 33689999999999865 2334 577999999999999999999999999
Q ss_pred HhcCCCCCcc----hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 607 LFELDPENVG----YHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 607 ~~~l~p~~~~----~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+++..|.++. .+..........|+.+.+.++.+.+.+
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9998777665 666677788888999999998887765
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.71 E-value=6.4e-16 Score=165.34 Aligned_cols=279 Identities=11% Similarity=-0.015 Sum_probs=218.2
Q ss_pred HHhcCCHHHHHH-HHhhcCC---C----ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCc
Q 044131 356 YSRLNEMEAARK-LFDESSE---K----SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGA 427 (784)
Q Consensus 356 y~~~g~~~~A~~-~f~~~~~---~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~ 427 (784)
|.-.|++++|.. .|++... . +...|..+...|.+.|++++|+..|+++.... +.+..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 344577888887 7774332 1 34568888888999999999999999988763 3466778888888889999
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--C-CHHHHHH---------------HHHHHH
Q 044131 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--K-SEVTWNT---------------MISGYG 489 (784)
Q Consensus 428 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~~~~~~~---------------li~~~~ 489 (784)
++.|...+..+.+.. +.+..++..+...|.+.|++++|...|+++.. | +...+.. .+..+.
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL 192 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence 999999999888775 55778888889999999999999999887652 2 2222221 133344
Q ss_pred HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHH
Q 044131 490 LHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEK 567 (784)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~e 567 (784)
..|++++|+..|+++.+..... +..++..+...+...|++++|..+|+.+.+. .|+ ...|..+...+.+.|++++
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~~~~ 269 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEE 269 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCCHHH
Confidence 8899999999999999853211 4788899999999999999999999998854 454 6789999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-----------cchHHHHHHHHHhcCChHHH
Q 044131 568 ALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPEN-----------VGYHVLLSNIYSAERDYLQA 634 (784)
Q Consensus 568 A~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~-----------~~~~~~l~~~y~~~g~~~~a 634 (784)
|.+.++++ ...| +..+|..+..++...|+++.|...+++++++.|++ +..+..++.+|...|++++|
T Consensus 270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999886 2344 57799999999999999999999999999999887 78899999999999999999
Q ss_pred HHHHH
Q 044131 635 ATVRQ 639 (784)
Q Consensus 635 ~~~~~ 639 (784)
..+++
T Consensus 350 ~~~~~ 354 (368)
T 1fch_A 350 GAADA 354 (368)
T ss_dssp HHHHT
T ss_pred HHhHH
Confidence 98875
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.67 E-value=3e-13 Score=150.82 Aligned_cols=351 Identities=15% Similarity=0.065 Sum_probs=293.2
Q ss_pred CCeeeHHHHHHHHHh----CCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcC----CCChhHHHHHHHHHHHhCCCcc
Q 044131 274 PDLISCNAMISGYTC----NGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYP----FGHLHLTNCIHSFCLKSGIVSN 345 (784)
Q Consensus 274 ~d~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~i~~~~~~~g~~~~ 345 (784)
.|..++..+-..|.. .+++++|+..|++..+.| +...+..+-..+.. .++.+.|...+....+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 455666677777777 899999999999998874 45566666666666 889999999999998876 5
Q ss_pred hHHHHHHHHHHHh----cCCHHHHHHHHhhcCCC-ChhHHHHHHHHHHh----CCChhHHHHHHHHHHhCCCCCCHHHHH
Q 044131 346 SSVLTALSTVYSR----LNEMEAARKLFDESSEK-SLASWNAMIAGYTQ----NGLTEEAISLFQEMQASKVAPNPVTVS 416 (784)
Q Consensus 346 ~~~~~~Li~~y~~----~g~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~pd~~t~~ 416 (784)
...+..|..+|.. .+++++|.+.|++..+. +..++..|...|.. .++.++|++.|++....| +...+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6777889999988 88999999999986544 66788888888887 789999999999998875 667777
Q ss_pred HHHHHHhh----hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHh----cCCHHHHHHHHhhcC-CCCHHHHHHHHHH
Q 044131 417 SILSACAQ----LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAK----CGNIVEARELFDLMS-HKSEVTWNTMISG 487 (784)
Q Consensus 417 ~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~-~~~~~~~~~li~~ 487 (784)
.+-..+.. .++.++|...+....+.+ +......|..+|.. .+++++|...|++.. ..+..++..+...
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~ 264 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYI 264 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77777777 789999999999999876 56678888888987 899999999999876 4567788888888
Q ss_pred HHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHhHHhcCCCCCcchHHHHHHH
Q 044131 488 YGL----HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHA-----GLVREGDEIFQSMIHDHGFKPLAEHYACMVDI 558 (784)
Q Consensus 488 ~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~ 558 (784)
|.. .++.++|++.|++..+.| +...+..+...+... ++.++|..+|+...+. -+...+..+..+
T Consensus 265 y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~ 337 (490)
T 2xm6_A 265 LEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----GDATAQANLGAI 337 (490)
T ss_dssp HHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----TCHHHHHHHHHH
T ss_pred HHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----CCHHHHHHHHHH
Confidence 888 899999999999998765 455666777777776 8999999999998753 245677788888
Q ss_pred HHhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----
Q 044131 559 LGRAG---QLEKALEFIKGLAVEPGPAVWGALLGACMI----HKDTNLARVASEKLFELDPENVGYHVLLSNIYSA---- 627 (784)
Q Consensus 559 l~r~g---~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~---- 627 (784)
|.+.| ++++|.+++++..-..++..+..|...+.. .+|.++|...++++.+.+ ++..+..|+.+|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSS
T ss_pred HHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCC
Confidence 87767 889999999887434678899999999988 899999999999998864 57799999999999
Q ss_pred cCChHHHHHHHHHHHhCC
Q 044131 628 ERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 628 ~g~~~~a~~~~~~m~~~~ 645 (784)
.++.++|.+.++...+.+
T Consensus 416 ~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 899999999999887755
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.67 E-value=7.9e-14 Score=143.67 Aligned_cols=245 Identities=10% Similarity=-0.051 Sum_probs=154.1
Q ss_pred HHhcCCHHHHHHHHhhcCCCCh----hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHH
Q 044131 356 YSRLNEMEAARKLFDESSEKSL----ASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLG 431 (784)
Q Consensus 356 y~~~g~~~~A~~~f~~~~~~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a 431 (784)
....|++..|...++.....+. ...-.+..+|...|++++|+..++. .-.|+..++..+...+...++.+.|
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3456888888888877665443 2345567788888888888876644 1345666777777777777778888
Q ss_pred HHHHHHHHHcCC-CCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 044131 432 KWVHELVKSRNF-ESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIR 510 (784)
Q Consensus 432 ~~i~~~~~~~g~-~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 510 (784)
.+.++.+...+. +.+..++..+...|...|++++|.+.|++ ..+...+..++..|.+.|+.++|++.|+++.+. .
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 160 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D 160 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence 888887776654 33556666777788888888888888887 456777777888888888888888888888774 3
Q ss_pred CCHHHH---HHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 044131 511 PSGVTF---LSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGAL 587 (784)
Q Consensus 511 pd~~t~---~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~l 587 (784)
|+.... .+.+..+...|++++|..+|+++.+. .++++.+|+.+
T Consensus 161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~----------------------------------~p~~~~~~~~l 206 (291)
T 3mkr_A 161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK----------------------------------CSPTLLLLNGQ 206 (291)
T ss_dssp TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH----------------------------------SCCCHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh----------------------------------CCCcHHHHHHH
Confidence 554211 11122223345566666666665543 12344455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH-HHHHHHHHH
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQ-AATVRQVVK 642 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~-a~~~~~~m~ 642 (784)
..++...|++++|+..++++++++|+++..+..++.++...|++++ +.++++.+.
T Consensus 207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~ 262 (291)
T 3mkr_A 207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555544 234444443
No 27
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.67 E-value=2.5e-15 Score=160.65 Aligned_cols=259 Identities=10% Similarity=-0.062 Sum_probs=210.6
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHH
Q 044131 376 SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALID 455 (784)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 455 (784)
+...|..+...+.+.|++++|+..|+++.... +.+..++..+...+...|++++|...+..+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888899999999999999999988753 3467788888889999999999999999998875 556788899999
Q ss_pred HHHhcCCHHHHHHHHhhcCC--CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 044131 456 MYAKCGNIVEARELFDLMSH--KS-----------EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIR-PSGVTFLSVLY 521 (784)
Q Consensus 456 ~y~k~g~~~~A~~~f~~~~~--~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~~t~~~ll~ 521 (784)
.|.+.|++++|...|+++.+ |+ ...+..+...|...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999988763 21 223445578889999999999999999985321 15788999999
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 044131 522 ACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTN 598 (784)
Q Consensus 522 a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~ 598 (784)
.+...|++++|.++|+...+. .| +...|..+..+|.+.|++++|.+.++++ ...| +..+|..+..++...|+++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV---RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999999854 34 4778999999999999999999999886 3445 4779999999999999999
Q ss_pred HHHHHHHHHhcCCCC------------CcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 599 LARVASEKLFELDPE------------NVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 599 ~a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
+|...+++++++.|+ +...+..|+.+|...|+.+.+.++.+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999998887 36678999999999999999887754
No 28
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.67 E-value=7.7e-15 Score=156.88 Aligned_cols=281 Identities=11% Similarity=0.035 Sum_probs=154.4
Q ss_pred HhcCChHHHHH-HHhcCCC-------CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCCh
Q 044131 256 SKCGEVERAEL-LFRDIVR-------PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHL 327 (784)
Q Consensus 256 ~~~g~~~~A~~-~f~~~~~-------~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 327 (784)
.-.|++++|.. .|++... .+...|..+...+.+.|++++|+..|+++.+..
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--------------------- 94 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--------------------- 94 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC---------------------
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------
Confidence 33467778877 7775422 245678888888888888888888888887652
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 044131 328 HLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQ 404 (784)
Q Consensus 328 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 404 (784)
+.+..++..+...|.+.|++++|.+.|++.. ..+..+|..+...|...|++++|++.|+++.
T Consensus 95 ---------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 159 (368)
T 1fch_A 95 ---------------PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWL 159 (368)
T ss_dssp ---------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2344556667777777777777777777543 3466778888888888888888888888887
Q ss_pred hCCCCCCHHH-HHH---------------HHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHH
Q 044131 405 ASKVAPNPVT-VSS---------------ILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARE 468 (784)
Q Consensus 405 ~~g~~pd~~t-~~~---------------ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 468 (784)
... |+... +.. .+..+...|++++|...+..+.+..-..
T Consensus 160 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~----------------------- 214 (368)
T 1fch_A 160 RYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTS----------------------- 214 (368)
T ss_dssp HTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTS-----------------------
T ss_pred HhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCc-----------------------
Confidence 753 32211 110 1122224444444444444444332110
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC
Q 044131 469 LFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL 548 (784)
Q Consensus 469 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~ 548 (784)
++..+|..+...|...|++++|+..|+++.+.. +.+..++..+...+...|++++|..+|+.+.+. .|+
T Consensus 215 -------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~ 283 (368)
T 1fch_A 215 -------IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL---QPG 283 (368)
T ss_dssp -------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTT
T ss_pred -------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC
Confidence 024455555555555555555555555555431 223344555555555555555555555555432 222
Q ss_pred -cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 549 -AEHYACMVDILGRAGQLEKALEFIKGLA-VEP------------GPAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 549 -~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p------------~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
...+..+..+|.+.|++++|.+.++++- ..| ...+|..+..++...|+.+.|..++++.+
T Consensus 284 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 284 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 4445555555555555555555554431 111 14566666666666677666666655443
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.65 E-value=1.9e-15 Score=161.61 Aligned_cols=230 Identities=11% Similarity=0.039 Sum_probs=194.9
Q ss_pred CHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHH
Q 044131 411 NPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISG 487 (784)
Q Consensus 411 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~ 487 (784)
+...+......+...|++++|...+..+++.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+...
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34457788889999999999999999999875 5678899999999999999999999999876 3568899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHH
Q 044131 488 YGLHGHGLEALQLFSEMLHSGIRPSGV-----------TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMV 556 (784)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~pd~~-----------t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv 556 (784)
|...|++++|+..|+++.+. .|+.. .+..+...+...|++++|.++|+.+.+...-.++...+..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999884 34422 233457789999999999999999986533323578899999
Q ss_pred HHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 044131 557 DILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQA 634 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 634 (784)
..|.+.|++++|.+.+++.. ..| +..+|..+..++...|+++.|...++++++++|+++..+..++.+|...|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 99999999999999998863 344 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 044131 635 ATVRQVVKK 643 (784)
Q Consensus 635 ~~~~~~m~~ 643 (784)
.+.++...+
T Consensus 301 ~~~~~~al~ 309 (365)
T 4eqf_A 301 VSNFLTALS 309 (365)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988765
No 30
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.65 E-value=6.2e-14 Score=155.49 Aligned_cols=369 Identities=10% Similarity=-0.034 Sum_probs=222.7
Q ss_pred chhHHHHHHHHHHhcCChHHHHHHHhcCC-----------C-CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCCh
Q 044131 244 HVYVLTGLVSFYSKCGEVERAELLFRDIV-----------R-PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNS 311 (784)
Q Consensus 244 ~~~~~~~li~~y~~~g~~~~A~~~f~~~~-----------~-~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 311 (784)
....||.|...|...|+.++|.+.|++.. . ...++|+.+...|...|++++|+..|++.......
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~--- 126 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK--- 126 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh---
Confidence 35567888888888888888887776531 1 23456777777777777777777777765432000
Q ss_pred hhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHh--cCCHHHHHHHHhhcC---CCChhHHHHHHHH
Q 044131 312 STIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSR--LNEMEAARKLFDESS---EKSLASWNAMIAG 386 (784)
Q Consensus 312 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~--~g~~~~A~~~f~~~~---~~~~~~~~~li~~ 386 (784)
.... .-.....++..+..++.+ .+++++|...|++.. ..+...+..+...
T Consensus 127 ---------~~~~----------------~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~ 181 (472)
T 4g1t_A 127 ---------FSSP----------------YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIA 181 (472)
T ss_dssp ---------SCCS----------------SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred ---------cccc----------------cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0000 001112333333333333 345778888877643 2344555555444
Q ss_pred ---HHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHh
Q 044131 387 ---YTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQ----LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAK 459 (784)
Q Consensus 387 ---~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 459 (784)
+...++.++|++.|++..... +.+...+..+...+.. .++.+.|.+.+..+.+.. +.+..++..+...|.+
T Consensus 182 ~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~ 259 (472)
T 4g1t_A 182 SYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRR 259 (472)
T ss_dssp HHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHH
T ss_pred HHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHH
Confidence 344577788888888776642 2244445444444433 456778888888877765 5567777888888888
Q ss_pred cCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHH-------------------cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 044131 460 CGNIVEARELFDLMS---HKSEVTWNTMISGYGL-------------------HGHGLEALQLFSEMLHSGIRPSGVTFL 517 (784)
Q Consensus 460 ~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~-------------------~g~~~~A~~~~~~m~~~g~~pd~~t~~ 517 (784)
.|++++|...|++.. ..+..+|..+...|.. .+..++|+..|++..+.. +.+..++.
T Consensus 260 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 338 (472)
T 4g1t_A 260 KDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCS 338 (472)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHH
T ss_pred cCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-Cchhhhhh
Confidence 888888888888765 2345566666655532 233567888888887743 33445677
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcc----hHHHHHH-HHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 044131 518 SVLYACSHAGLVREGDEIFQSMIHDHGFKPLAE----HYACMVD-ILGRAGQLEKALEFIKGL-AVEPGPAVWGALLGAC 591 (784)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~----~~~~lv~-~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~a~ 591 (784)
.+...+...|++++|.++|++..+. .|+.. .+..+.. .+...|+.++|++.+++. .+.|+...+...+
T Consensus 339 ~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~--- 412 (472)
T 4g1t_A 339 ILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMK--- 412 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHH---
T ss_pred hHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH---
Confidence 8888999999999999999988743 34322 2233333 234778999999998775 4677655443333
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEE
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLI 655 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i 655 (784)
+.++.++++.++.+|+++..|..|+.+|...|++++|.+.+++..+.+-.-....+|+
T Consensus 413 ------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 413 ------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp ------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred ------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence 4456778888999999999999999999999999999999988777665444455554
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.64 E-value=7.3e-15 Score=153.95 Aligned_cols=253 Identities=10% Similarity=-0.039 Sum_probs=168.1
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhc
Q 044131 381 NAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKC 460 (784)
Q Consensus 381 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~ 460 (784)
..+...+.+.|++++|+.+|+++.... +.+...+..+..++...|+++.|...+..+.+.. +.+..++..+...|.+.
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 333344444444444444444443321 1133333344444444444444444444444432 22344444444555555
Q ss_pred CCHHHHHHHHhhcCC--C-CHHHHHH-------------H-HH-HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044131 461 GNIVEARELFDLMSH--K-SEVTWNT-------------M-IS-GYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522 (784)
Q Consensus 461 g~~~~A~~~f~~~~~--~-~~~~~~~-------------l-i~-~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 522 (784)
|++++|...|+++.+ | +...+.. + .. .+...|++++|++.|+++.+.. +.+..++..+...
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 181 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVL 181 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 555555555544331 1 1111111 1 12 2667788899999999988753 3467788888889
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNL 599 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~ 599 (784)
+...|++++|.++|+.+.+. .| +...+..+...+.+.|++++|.+.++++ ...| +..+|..+...+...|+++.
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 99999999999999988754 34 3678888999999999999999999876 2334 57789999999999999999
Q ss_pred HHHHHHHHhcCCCC------------CcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 600 ARVASEKLFELDPE------------NVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 600 a~~~~~~~~~l~p~------------~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
|...+++++++.|+ ++..+..++.+|...|++++|..+++
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999 78899999999999999999998875
No 32
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.63 E-value=2.4e-16 Score=178.54 Aligned_cols=131 Identities=14% Similarity=0.143 Sum_probs=111.6
Q ss_pred CCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 044131 443 FESNIYVSTALIDMYAKCGNIVEARELFDLMS-------HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVT 515 (784)
Q Consensus 443 ~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t 515 (784)
...-..+||+||++|+|+|++++|.++|++|. .||++|||+||.||++.|+.++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997653 58999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCC-HHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHh
Q 044131 516 FLSVLYACSHAGL-VREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKG 574 (784)
Q Consensus 516 ~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~ 574 (784)
|+++|.++++.|. .++|.++|++|.++ |+.||..+|+|++....|.+-++...++...
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcc
Confidence 9999999999987 57889999999765 9999999999998877777655555544333
No 33
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.59 E-value=1.7e-13 Score=143.54 Aligned_cols=226 Identities=12% Similarity=0.034 Sum_probs=122.5
Q ss_pred CeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHH
Q 044131 275 DLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALST 354 (784)
Q Consensus 275 d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 354 (784)
+...|..+...+...|++++|+.+|+++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------------------------~~~~~~~~~l~~ 63 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA------------------------------------PEREEAWRSLGL 63 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC------------------------------------TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC------------------------------------CCCHHHHHHHHH
Confidence 44556677777788888888888888776542 223445555666
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHH------------
Q 044131 355 VYSRLNEMEAARKLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSIL------------ 419 (784)
Q Consensus 355 ~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll------------ 419 (784)
.|.+.|++++|...|++.. ..+...|..+...|...|++++|++.|+++.... |+.......+
T Consensus 64 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 64 TQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC----------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHH
Confidence 6667777777777776543 2355677777777778888888888887777642 3221111111
Q ss_pred --HH--HhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcC
Q 044131 420 --SA--CAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHG 492 (784)
Q Consensus 420 --~a--~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g 492 (784)
.. +...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|+++. ..+..+|..+...|...|
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 21 445555555555555555443 2234444555555555555555555554433 123444444555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 493 HGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
++++|+..|+++.+.. +.+..++..+...+...|++++|.++|+...
T Consensus 221 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 221 RPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5555555555444421 1223344444444444444444444444443
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.59 E-value=7.8e-16 Score=174.48 Aligned_cols=159 Identities=11% Similarity=0.111 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHH
Q 044131 378 ASWNAMIAGYTQNGLTEEAISLFQEMQA---SKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALI 454 (784)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li 454 (784)
++||+||.+|++.|+.++|.++|.+|.+ .|+.||.+||+++|.++++.|.+++|.++++.|.+.|+.|
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P--------- 198 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP--------- 198 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC---------
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC---------
Confidence 4778888888888888888888777653 3566666666666666666666666666666666666554
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 044131 455 DMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGH-GLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGD 533 (784)
Q Consensus 455 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~ 533 (784)
|++|||+||.++++.|+ .++|.++|++|.+.|+.||.+||+++++++.+.+.++...
T Consensus 199 ----------------------DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vr 256 (1134)
T 3spa_A 199 ----------------------DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH 256 (1134)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred ----------------------cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHH
Confidence 56666666667777776 4688899999999999999999999998877765544444
Q ss_pred HHHHHhHHhcCCCCC------cchHHHHHHHHHhcC---------CHHHHHHHHH
Q 044131 534 EIFQSMIHDHGFKPL------AEHYACMVDILGRAG---------QLEKALEFIK 573 (784)
Q Consensus 534 ~~~~~m~~~~~~~p~------~~~~~~lv~~l~r~g---------~~~eA~~~~~ 573 (784)
++ .. ++.|+ ..+...|.+.|.+.+ .+++-.++|+
T Consensus 257 kv----~P--~f~p~~~~~~~~~t~~LL~dl~s~d~~~s~pk~~~~~~~L~~~~~ 305 (1134)
T 3spa_A 257 KV----KP--TFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305 (1134)
T ss_dssp GG----CC--CCCCCCCCCCCCCCCTTTHHHHCCCSCCCCCCCSSCHHHHHHHHH
T ss_pred Hh----Cc--ccCCCCCCcccccchHHHHHHHccCCCCcCccccCCHHHHHHHHH
Confidence 33 22 33333 455666888888776 2455555554
No 35
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.59 E-value=2.5e-13 Score=139.88 Aligned_cols=224 Identities=11% Similarity=0.069 Sum_probs=149.1
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChh
Q 044131 249 TGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLH 328 (784)
Q Consensus 249 ~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 328 (784)
..+..+|...|+++.|...++....|+..++..+...+...|+.++|++.++++...+..|+
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~------------------ 99 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVT------------------ 99 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCS------------------
T ss_pred HHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCC------------------
Confidence 34556677777777777666655445555666666667777777777777777665543333
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC
Q 044131 329 LTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKV 408 (784)
Q Consensus 329 ~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 408 (784)
+..++..+...|...|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++...
T Consensus 100 ----------------~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-- 159 (291)
T 3mkr_A 100 ----------------NTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-- 159 (291)
T ss_dssp ----------------CHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ----------------CHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--
Confidence 344556677888899999999999998 567788999999999999999999999999875
Q ss_pred CCCHHHHHHHH----HHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHH
Q 044131 409 APNPVTVSSIL----SACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTW 481 (784)
Q Consensus 409 ~pd~~t~~~ll----~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~ 481 (784)
.|+.. ...+. ..+...|++++|..+++.+.+. .+.+..+++.+...|.+.|++++|...|++.. ..+..+|
T Consensus 160 ~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l 237 (291)
T 3mkr_A 160 DEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETL 237 (291)
T ss_dssp CTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 35532 22222 2223346777777777777765 24566666666666666666666666666644 2355566
Q ss_pred HHHHHHHHHcCCHHH-HHHHHHHHHHCCCCCCHH
Q 044131 482 NTMISGYGLHGHGLE-ALQLFSEMLHSGIRPSGV 514 (784)
Q Consensus 482 ~~li~~~~~~g~~~~-A~~~~~~m~~~g~~pd~~ 514 (784)
..++..+...|+.++ +.++++++.+ +.|+..
T Consensus 238 ~~l~~~~~~~g~~~eaa~~~~~~~~~--~~P~~~ 269 (291)
T 3mkr_A 238 INLVVLSQHLGKPPEVTNRYLSQLKD--AHRSHP 269 (291)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH--hCCCCh
Confidence 666666666666654 4566666665 345443
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.58 E-value=2.2e-13 Score=151.06 Aligned_cols=381 Identities=11% Similarity=-0.011 Sum_probs=227.5
Q ss_pred ChhhHHhHHHHHhcccchhHHHHHHHHHHHh-----C--CCC-chhHHHHHHHHHHhcCChHHHHHHHhcCCC-------
Q 044131 209 DSTSVAAVLPAVAEVQELRLGMEIQCLGLKL-----G--FHD-HVYVLTGLVSFYSKCGEVERAELLFRDIVR------- 273 (784)
Q Consensus 209 d~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~-----g--~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~~~~------- 273 (784)
....|+.+-..+...|+.++|.+.+...++. + ..| ...+|+.+...|...|++++|...|++..+
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3456888888889999999999999988763 1 122 356788999999999999999998876521
Q ss_pred C----CeeeHHHHHHHHHh--CCCchHHHHHHHHHHHcCCCCChh-hHHhHHHh---hcCCCChhHHHHHHHHHHHhCCC
Q 044131 274 P----DLISCNAMISGYTC--NGKTESSLRLFRQLLASAERVNSS-TIVGLIPV---FYPFGHLHLTNCIHSFCLKSGIV 343 (784)
Q Consensus 274 ~----d~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~---~~~~~~~~~a~~i~~~~~~~g~~ 343 (784)
+ ...+++.+..++.. .+++++|++.|++.++. .|+.. .+..+..+ ....++.+.+.+.+...++.. +
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p 206 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P 206 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence 1 12345544445544 45789999999998875 35433 33333222 345677778888888887765 3
Q ss_pred cchHHHHHHHHHHHh----cCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC-HHHH
Q 044131 344 SNSSVLTALSTVYSR----LNEMEAARKLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN-PVTV 415 (784)
Q Consensus 344 ~~~~~~~~Li~~y~~----~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~~t~ 415 (784)
.+..++..+...+.. .|+.++|.+.+++.. ..+...|+.+...|.+.|++++|+..|.+.... .|+ ..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHHH
Confidence 445555555544443 466778888887643 446678888888899999999999999888764 444 3444
Q ss_pred HHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcC
Q 044131 416 SSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHG 492 (784)
Q Consensus 416 ~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g 492 (784)
..+...+...+.... ... ...........+..+.|...|+... ..+..+|..+...|...|
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhc
Confidence 444333322111000 000 0001111112234567777777654 345567888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 044131 493 HGLEALQLFSEMLHSGIRPSGV--TFLSVLY-ACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKAL 569 (784)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~pd~~--t~~~ll~-a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~ 569 (784)
++++|++.|++..+....|... .+..+.. ...+.|+.++|.+.|++.. .+.|+....... ++.+.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal---~i~~~~~~~~~~---------~~~l~ 416 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV---KINQKSREKEKM---------KDKLQ 416 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH---HSCCCCHHHHHH---------HHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCcccHHHHHH---------HHHHH
Confidence 9999999999998864333321 2222222 3457899999999999887 456664332222 23333
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 570 EFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 570 ~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
+++++. ...| ++.+|..|..++...|+.++|...++++++++|.+|.++.-++
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 444332 2233 5668999999999999999999999999999999888766554
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.53 E-value=1.7e-13 Score=134.67 Aligned_cols=194 Identities=14% Similarity=0.030 Sum_probs=155.2
Q ss_pred CCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 044131 444 ESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVL 520 (784)
Q Consensus 444 ~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll 520 (784)
+++...+..+...|.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45677788888899999999999999987653 467789999999999999999999999998853 33456788888
Q ss_pred HHHHcc-----------CCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHH
Q 044131 521 YACSHA-----------GLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEPGPAVWGAL 587 (784)
Q Consensus 521 ~a~~~~-----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~l 587 (784)
.++... |++++|...|+...+. .|+ ...+..+..+|...|++++|++.+++.- ...++..|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 888888 9999999999998853 565 6788889999999999999999998762 22778899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
..++...|++++|...++++++++|+++..+..++.+|...|++++|.+.++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999887653
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.53 E-value=5.2e-13 Score=134.42 Aligned_cols=216 Identities=11% Similarity=0.011 Sum_probs=153.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHH
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYA 458 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 458 (784)
.|..+...+...|++++|+..|++..... .+... +..+...|.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~-----------------------------------~~~~~~~~~ 49 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITY-----------------------------------LNNRAAAEY 49 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHH-----------------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHH-----------------------------------HHHHHHHHH
Confidence 45555555666666666666666555543 34444 444444555
Q ss_pred hcCCHHHHHHHHhhcCC--C----C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044131 459 KCGNIVEARELFDLMSH--K----S----EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGL 528 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~~--~----~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 528 (784)
..|++++|...|++..+ | + ...|..+...|...|++++|+..|++..+ +.|+.. .+...|+
T Consensus 50 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~~~ 120 (258)
T 3uq3_A 50 EKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKLRN 120 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHHHH
T ss_pred HcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHHhH
Confidence 55555555555544431 1 1 45677777778888888888888888777 345532 3455677
Q ss_pred HHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 044131 529 VREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGACMIHKDTNLARVASE 605 (784)
Q Consensus 529 ~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~ 605 (784)
+++|...++.+.+ ..|+ ...+..+...+.+.|++++|.+.+++.- . +.+..+|..+...+...|+++.|...++
T Consensus 121 ~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 197 (258)
T 3uq3_A 121 AEKELKKAEAEAY---VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCN 197 (258)
T ss_dssp HHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH---cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 8888888888764 3443 5677788888888888888888887762 2 3457788899999999999999999999
Q ss_pred HHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 606 KLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 606 ~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 198 ~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 198 KAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887654
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.50 E-value=1.6e-12 Score=132.36 Aligned_cols=240 Identities=13% Similarity=-0.048 Sum_probs=183.7
Q ss_pred CCChhHHHHHHHHHHhCCCC--C-CHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHH
Q 044131 390 NGLTEEAISLFQEMQASKVA--P-NPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEA 466 (784)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g~~--p-d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A 466 (784)
.|++++|+..|+++...... | +..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677788888777765321 1 34566667777777888888888888877764 44677888888889999999999
Q ss_pred HHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc
Q 044131 467 RELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDH 543 (784)
Q Consensus 467 ~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~ 543 (784)
...|++.. ..+...|..+...|...|++++|+..|+++.+. .|+.......+..+...|++++|..+++......
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 99988776 346789999999999999999999999999984 5666555556666677899999999998887542
Q ss_pred CCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch
Q 044131 544 GFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEPG-----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGY 617 (784)
Q Consensus 544 ~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 617 (784)
+++... ..++..+...++.++|.+.+++.- ..|+ ..+|..+...+...|+++.|...++++++++|++...
T Consensus 175 --~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 251 (275)
T 1xnf_A 175 --DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251 (275)
T ss_dssp --CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred --CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH
Confidence 333334 447778888889999999998763 3332 5688999999999999999999999999999987544
Q ss_pred HHHHHHHHHhcCChHHHHHHH
Q 044131 618 HVLLSNIYSAERDYLQAATVR 638 (784)
Q Consensus 618 ~~~l~~~y~~~g~~~~a~~~~ 638 (784)
+ +.++...|++++|.+-+
T Consensus 252 ~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 H---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp H---HHHHHHHHHHHHC----
T ss_pred H---HHHHHHHHHHHhhHHHH
Confidence 4 66788888888887654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.49 E-value=1.2e-12 Score=131.78 Aligned_cols=235 Identities=12% Similarity=0.033 Sum_probs=156.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCC--CCCC----HHHHH
Q 044131 345 NSSVLTALSTVYSRLNEMEAARKLFDESSE--KSLASWNAMIAGYTQNGLTEEAISLFQEMQASK--VAPN----PVTVS 416 (784)
Q Consensus 345 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~pd----~~t~~ 416 (784)
....+..+...|...|++++|...|++... .+...|..+...|...|++++|++.|++..... ..|+ ..++.
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 356788899999999999999999986432 677899999999999999999999999987632 1112 24444
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHH
Q 044131 417 SILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLE 496 (784)
Q Consensus 417 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 496 (784)
.+...+...|++++|...+..+.+.. ++. ..+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~---------------------------------~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH---------------------------------RTA-------DILTKLRNAEK 123 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC---------------------------------CCH-------HHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC---------------------------------chh-------HHHHHHhHHHH
Confidence 55555555555555555555555432 221 22344455666
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 044131 497 ALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL 575 (784)
Q Consensus 497 A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m 575 (784)
|+..++++... .| +...+..+...+...|++++|...|+...+.. +.+...|..+...|.+.|++++|.+.+++.
T Consensus 124 a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 124 ELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666553 23 23345555566666666666666666665431 123556666677777777777777776655
Q ss_pred -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC------CCCcchHHHHHH
Q 044131 576 -AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELD------PENVGYHVLLSN 623 (784)
Q Consensus 576 -~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~ 623 (784)
...| +..+|..+..++...|+.+.|...++++++++ |++...+..|..
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 2233 46678888888888888888888888888888 777666655543
No 41
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.46 E-value=1.5e-12 Score=132.54 Aligned_cols=253 Identities=13% Similarity=0.043 Sum_probs=149.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHH
Q 044131 348 VLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPN--PVTVSSILSAC 422 (784)
Q Consensus 348 ~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd--~~t~~~ll~a~ 422 (784)
+.......|...|++++|...|++..+ .+...|..+...|.+.|++++|++.|++....+..|+ ...+..+...+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~ 84 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL 84 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence 344556677777788888777776532 3445677777777777777777777777776332222 22356666666
Q ss_pred hhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHH
Q 044131 423 AQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQ 499 (784)
Q Consensus 423 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 499 (784)
...|++++|...+..+.+.. +.+..++..+...|.+.|++++|...|++..+ .+...|..+...+...+++++|++
T Consensus 85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777766653 33455666666666666666666666666552 244455555522223346666666
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCC---HHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC
Q 044131 500 LFSEMLHSGIRPS-GVTFLSVLYACSHAGL---VREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL 575 (784)
Q Consensus 500 ~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m 575 (784)
.|+++.+. .|+ ...+..+...+...|. .++|...|+...+...-.|+.. -
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~----------------------- 217 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K----------------------- 217 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H-----------------------
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h-----------------------
Confidence 66666553 232 3344444444444444 4444444444432211111100 0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 044131 576 AVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAER 629 (784)
Q Consensus 576 ~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 629 (784)
..-..+|..+...+...|+++.|...++++++++|+++.....+..+....+
T Consensus 218 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 218 --DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp --HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred --HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 0012467778888899999999999999999999999988887776655544
No 42
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.44 E-value=8.2e-12 Score=125.42 Aligned_cols=195 Identities=12% Similarity=-0.023 Sum_probs=138.6
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYAC 523 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~ 523 (784)
...+..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 3455566666677777777777776654 2356677777777777777777777777777642 33556666777777
Q ss_pred HccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHH
Q 044131 524 SHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLA 600 (784)
Q Consensus 524 ~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a 600 (784)
...|++++|.++|+.+.+ .+..|+ ...+..+...+.+.|++++|.+.+++.. ..| +..+|..+...+...|+++.|
T Consensus 116 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777764 224453 5566777777777888888877777652 233 466777777888888888888
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 601 RVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 601 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...++++++..|+++..+..++.+|...|++++|.+.++.+.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888777765
No 43
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.44 E-value=4.2e-12 Score=135.39 Aligned_cols=243 Identities=14% Similarity=0.059 Sum_probs=193.0
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhhCc-hHHHHHHHHHHHHcCCCCchhhHhHHHH
Q 044131 378 ASWNAMIAGYTQNGLTEEAISLFQEMQASKVAP-NPVTVSSILSACAQLGA-ISLGKWVHELVKSRNFESNIYVSTALID 455 (784)
Q Consensus 378 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-d~~t~~~ll~a~~~~~~-~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 455 (784)
..|+.+...+.+.|++++|++.|++.+.. .| +...|..+..++...|+ +++|...++.+++.. +.+..+++.+..
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 46777777788888888888888888764 44 45666777777778885 888888888888765 456778888888
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHH
Q 044131 456 MYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSH-AGLVRE 531 (784)
Q Consensus 456 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~-~g~~~~ 531 (784)
.|.+.|++++|+..|+++. ..+...|..+..++...|++++|+..|+++++.. +-+...|..+..++.. .|..++
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence 8888899999999988776 3577899999999999999999999999999853 2356678888888888 666577
Q ss_pred H-----HHHHHHhHHhcCCCCC-cchHHHHHHHHHhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 044131 532 G-----DEIFQSMIHDHGFKPL-AEHYACMVDILGRAG--QLEKALEFIKGLAVEP-GPAVWGALLGACMIHK------- 595 (784)
Q Consensus 532 a-----~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g--~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~g------- 595 (784)
| +++|+..++ +.|+ ...|..+..+|...| ++++|.++++++...| +...+..|...+...|
T Consensus 254 A~~~~el~~~~~Al~---l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIK---LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHH---HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 578888774 4565 678888888999888 6899999998876555 4568888888888764
Q ss_pred -C-HHHHHHHHHHH-hcCCCCCcchHHHHHHHHHh
Q 044131 596 -D-TNLARVASEKL-FELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 596 -~-~~~a~~~~~~~-~~l~p~~~~~~~~l~~~y~~ 627 (784)
+ ++.|..+++++ .+++|....+|..++..+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 3 58999999999 99999999999888876654
No 44
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.43 E-value=5.8e-11 Score=130.44 Aligned_cols=345 Identities=11% Similarity=0.051 Sum_probs=155.7
Q ss_pred HHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCh---HHHHHHHhcCCCCCeeeHHHHHHHHHhCC----
Q 044131 218 PAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEV---ERAELLFRDIVRPDLISCNAMISGYTCNG---- 290 (784)
Q Consensus 218 ~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~d~~~~~~li~~~~~~g---- 290 (784)
....+.|++++|.+++..+.+.| ++..+..|..+|...|+. ++|...|++..+.+...+..+...+...|
T Consensus 11 ~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 11 NEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 33445566666777666666655 233444555666667777 78888888776667777777776555555
Q ss_pred -CchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCCh---hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcC----CH
Q 044131 291 -KTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHL---HLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLN----EM 362 (784)
Q Consensus 291 -~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~---~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g----~~ 362 (784)
++++|+..|++..+.|... .+..+-..+...+.. ..+.+.+......| +......|..+|...+ ..
T Consensus 88 ~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 6678888888887765432 333333333322221 22333333333333 2333444445554444 33
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHhCC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHH
Q 044131 363 EAARKLFDESSEKSLASWNAMIAGYTQNG---LTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVK 439 (784)
Q Consensus 363 ~~A~~~f~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 439 (784)
+.+..+++.....+..++..|...|.+.| +.++|++.|++. .
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~a-----------------------------------a 206 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAG-----------------------------------V 206 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----------------------------------H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHH-----------------------------------H
Confidence 33444444444444445555555555544 444455444444 4
Q ss_pred HcCCCCchhhHhHHHHHHHhc----CCHHHHHHHHhhcCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCC
Q 044131 440 SRNFESNIYVSTALIDMYAKC----GNIVEARELFDLMSHKSEVTWNTMISG-Y--GLHGHGLEALQLFSEMLHSGIRPS 512 (784)
Q Consensus 440 ~~g~~~~~~~~~~Li~~y~k~----g~~~~A~~~f~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~~pd 512 (784)
+.| +++...+..|..+|... +++++|...|++....+...+..|... | ...|+.++|++.|++..+.| +
T Consensus 207 ~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~ 282 (452)
T 3e4b_A 207 SRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---Q 282 (452)
T ss_dssp HTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---C
T ss_pred HCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---C
Confidence 444 22233223444444333 455555555555442234445555444 2 23566666666666666554 3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 044131 513 GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACM 592 (784)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~ 592 (784)
...+..+...|. .|. | ...++++|.+++++.. .-++..+..|...+.
T Consensus 283 ~~A~~~Lg~~y~-~G~---------------g----------------~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~ 329 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGK---------------W----------------VPADAKAAEAHFEKAV-GREVAADYYLGQIYR 329 (452)
T ss_dssp HHHHHHHHHHHH-HCS---------------S----------------SCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCC---------------C----------------CCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence 333333333333 220 0 0114455555555444 334444444444443
Q ss_pred h----cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCC
Q 044131 593 I----HKDTNLARVASEKLFELDPENVGYHVLLSNIYSA----ERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 593 ~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~ 645 (784)
. ..|.++|...++++.+ +.++.....|+.+|.. ..+.++|...++.-.+.|
T Consensus 330 ~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 330 RGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp TTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred CCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 3 2256666666666554 2344555666666653 345666666665555544
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.43 E-value=1.2e-11 Score=121.46 Aligned_cols=196 Identities=15% Similarity=0.025 Sum_probs=142.9
Q ss_pred chhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044131 446 NIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522 (784)
Q Consensus 446 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 522 (784)
+..++..+...|...|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~ 85 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF 85 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 45566667777777777777777777654 2456677777777777888888888888777642 3355667777777
Q ss_pred HHcc-CCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHH
Q 044131 523 CSHA-GLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTN 598 (784)
Q Consensus 523 ~~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~ 598 (784)
+... |++++|..+|+.+.+ .+..|+ ...+..+...+.+.|++++|.+.++++. ..| +...|..+...+...|+++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 86 LCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 7777 888888888887765 223343 5667777777888888888888877652 333 4667777888888888888
Q ss_pred HHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 599 LARVASEKLFELDP-ENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 599 ~a~~~~~~~~~l~p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.|...++++++..| +++..+..++.++...|+.+++...++.+.+
T Consensus 165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 88888888888888 7777888888888888888888888777654
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.41 E-value=3e-11 Score=121.29 Aligned_cols=205 Identities=15% Similarity=0.076 Sum_probs=138.5
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHH
Q 044131 377 LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDM 456 (784)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 456 (784)
...|..+...|...|++++|++.|+++.... +.+... +..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~-----------------------------------~~~la~~ 80 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADA-----------------------------------HAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHH-----------------------------------HHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHH-----------------------------------HHHHHHH
Confidence 4567777777777788888888777776542 223334 4444444
Q ss_pred HHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHH
Q 044131 457 YAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREG 532 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a 532 (784)
|.+.|++++|.+.|+++. ..+...|..+...|...|++++|+++|+++.+.+..| +...+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555554433 2345566666666777777777777777766633344 344566666777777777777
Q ss_pred HHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 044131 533 DEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVE-PGPAVWGALLGACMIHKDTNLARVASEKLFE 609 (784)
Q Consensus 533 ~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~ 609 (784)
.++|+...+. .| +...+..+...+.+.|++++|.+.++++ ... .+...|..+...+...|+.+.|...++++++
T Consensus 161 ~~~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 161 KEYFEKSLRL---NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc---CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 7777777643 23 3566777888888888888888888775 233 4566788888888899999999999999999
Q ss_pred CCCCCcchHHH
Q 044131 610 LDPENVGYHVL 620 (784)
Q Consensus 610 l~p~~~~~~~~ 620 (784)
+.|+++.....
T Consensus 238 ~~p~~~~~~~~ 248 (252)
T 2ho1_A 238 LYPGSLEYQEF 248 (252)
T ss_dssp HCTTSHHHHHH
T ss_pred HCCCCHHHHHH
Confidence 99998765543
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.40 E-value=4.2e-12 Score=126.53 Aligned_cols=215 Identities=10% Similarity=0.033 Sum_probs=112.3
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHH
Q 044131 377 LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDM 456 (784)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 456 (784)
...|..+...+.+.|++++|+..|+++.... +.+...+..+...+...|++++|...+..+.+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 87 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-------------- 87 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------
Confidence 3455556666666666666666666665431 1223333333333344444444444443333321
Q ss_pred HHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 044131 457 YAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIF 536 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 536 (784)
..+...|..+...|...|++++|++.|+++.+.. +.+...+..+...+...|++++|..++
T Consensus 88 ------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~ 148 (243)
T 2q7f_A 88 ------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYL 148 (243)
T ss_dssp ------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred ------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence 2244555555666666666666666666666542 234455556666666666666666666
Q ss_pred HHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 537 QSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 537 ~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
+.+.+.. +.+...+..+...+.+.|++++|.+.++++. . +.+..+|..+..++...|+.+.|...++++++++|++
T Consensus 149 ~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 226 (243)
T 2q7f_A 149 QRAVELN--ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDH 226 (243)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHhC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcch
Confidence 6665431 1235556666666777777777777766542 2 2346677777778888888888888888888888887
Q ss_pred cchHHHHHHHHHh
Q 044131 615 VGYHVLLSNIYSA 627 (784)
Q Consensus 615 ~~~~~~l~~~y~~ 627 (784)
+..+..++.+...
T Consensus 227 ~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 227 MLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHTC----
T ss_pred HHHHHHHHHHHhh
Confidence 7777666555443
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.40 E-value=7.6e-11 Score=120.09 Aligned_cols=226 Identities=9% Similarity=-0.077 Sum_probs=132.6
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----hCchHHHHHHHHHHHHcCCCCchhhHh
Q 044131 376 SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQ----LGAISLGKWVHELVKSRNFESNIYVST 451 (784)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~----~~~~~~a~~i~~~~~~~g~~~~~~~~~ 451 (784)
+..++..+...|.+.|++++|+..|++.... -+...+..+...+.. .+++++|...+..+.+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445555555666666666666666666552 233444445555555 566666666666655554 445555
Q ss_pred HHHHHHHh----cCCHHHHHHHHhhcC-CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044131 452 ALIDMYAK----CGNIVEARELFDLMS-HKSEVTWNTMISGYGL----HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522 (784)
Q Consensus 452 ~Li~~y~k----~g~~~~A~~~f~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 522 (784)
.|..+|.. .|++++|...|++.. ..+..++..+...|.. .|++++|++.|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 56666666 666666666666544 2355566666666666 677777777777776654 34455555555
Q ss_pred HHc----cCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 044131 523 CSH----AGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGR----AGQLEKALEFIKGLAVEPGPAVWGALLGACMI- 593 (784)
Q Consensus 523 ~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~- 593 (784)
+.. .++.++|.++|+...+. .+...+..+..+|.+ .+++++|.+.+++..-..+...+..|...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 555 66777777777666532 133455556666666 66666666666554211224555666666666
Q ss_pred ---cCCHHHHHHHHHHHhcCCCCC
Q 044131 594 ---HKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 594 ---~g~~~~a~~~~~~~~~l~p~~ 614 (784)
.++.++|...++++.+++|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 666666666666666666653
No 49
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.39 E-value=4e-11 Score=117.62 Aligned_cols=208 Identities=13% Similarity=0.034 Sum_probs=141.7
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHH
Q 044131 376 SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALID 455 (784)
Q Consensus 376 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~ 455 (784)
+...|..+...|...|++++|++.|+++.... | .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~----------------------------------~~~~~~~~l~~ 50 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--P----------------------------------KNELAWLVRAE 50 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T----------------------------------TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c----------------------------------cchHHHHHHHH
Confidence 34456666666666666666666666665432 2 22334444555
Q ss_pred HHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHH
Q 044131 456 MYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLH-GHGLEALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVR 530 (784)
Q Consensus 456 ~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~ 530 (784)
.|...|++++|...|+++. ..+..+|..+...|... |++++|+..|+++.+.+..|+ ...+..+...+...|+++
T Consensus 51 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 130 (225)
T 2vq2_A 51 IYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFG 130 (225)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555543 23555677777777777 778888888877776333343 456667777788888888
Q ss_pred HHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CC--CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044131 531 EGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VE--PGPAVWGALLGACMIHKDTNLARVASEK 606 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~--p~~~~~~~ll~a~~~~g~~~~a~~~~~~ 606 (784)
+|..+|+.+.+. .|+ ...+..+...+.+.|++++|.+.++++- .. .+...|..+...+...|+.+.+...++.
T Consensus 131 ~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 131 LAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp HHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 888888877643 343 6677778888888888888888887752 22 4566777777788889999999999999
Q ss_pred HhcCCCCCcchHHHHH
Q 044131 607 LFELDPENVGYHVLLS 622 (784)
Q Consensus 607 ~~~l~p~~~~~~~~l~ 622 (784)
+.+..|+++.....+.
T Consensus 208 ~~~~~p~~~~~~~~l~ 223 (225)
T 2vq2_A 208 LQANFPYSEELQTVLT 223 (225)
T ss_dssp HHHHCTTCHHHHHHHC
T ss_pred HHHhCCCCHHHHHHhc
Confidence 9999999887766553
No 50
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.38 E-value=1.9e-11 Score=119.85 Aligned_cols=189 Identities=13% Similarity=0.049 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHH
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYA 458 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~ 458 (784)
.|..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...++.+++.. +.+...+..+...|.
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34444444444444444444444444321 1123333334444444444444444444444432 223334444444444
Q ss_pred hc-----------CCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044131 459 KC-----------GNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACS 524 (784)
Q Consensus 459 k~-----------g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 524 (784)
+. |++++|...|++.. ..+...|..+...|...|++++|+..|++..+.. .+...+..+..++.
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHH
Confidence 44 55556655555543 1244556666666666666666666666666554 45555566666666
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHh
Q 044131 525 HAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKG 574 (784)
Q Consensus 525 ~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~ 574 (784)
..|++++|...|+...+. .|+ ...+..+..++.+.|++++|.+.+++
T Consensus 163 ~~g~~~~A~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQ---APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTC-------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666666666665532 333 44555555566666666666655544
No 51
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.37 E-value=1.6e-10 Score=117.76 Aligned_cols=223 Identities=13% Similarity=-0.023 Sum_probs=193.5
Q ss_pred CHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHh----cCCHHHHHHHHhhcCC-CCHHHHHHHH
Q 044131 411 NPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAK----CGNIVEARELFDLMSH-KSEVTWNTMI 485 (784)
Q Consensus 411 d~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~~~li 485 (784)
+..++..+-..+...+++++|...+..+.+. .+...+..|..+|.. .|++++|...|++..+ .+..+|..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4566777778888999999999999999983 356778889999999 9999999999998763 4788999999
Q ss_pred HHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhHHhcCCCCCcchHHHHHH
Q 044131 486 SGYGL----HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSH----AGLVREGDEIFQSMIHDHGFKPLAEHYACMVD 557 (784)
Q Consensus 486 ~~~~~----~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 557 (784)
..|.. .+++++|+..|++..+.+ +...+..+...+.. .|+.++|.++|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 77788888889998 99999999999998753 3 5667778888
Q ss_pred HHHh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh--
Q 044131 558 ILGR----AGQLEKALEFIKGLAVEPGPAVWGALLGACMI----HKDTNLARVASEKLFELDPENVGYHVLLSNIYSA-- 627 (784)
Q Consensus 558 ~l~r----~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~-- 627 (784)
+|.+ .+++++|.+.+++.--..++..+..+...+.. .++.++|...++++++.+| +..+..|+.+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8888 99999999999886423467788889999999 9999999999999999877 6788999999999
Q ss_pred --cCChHHHHHHHHHHHhCC
Q 044131 628 --ERDYLQAATVRQVVKKRK 645 (784)
Q Consensus 628 --~g~~~~a~~~~~~m~~~~ 645 (784)
.|++++|.+.++...+.|
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 999999999998877654
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.37 E-value=8.3e-12 Score=124.38 Aligned_cols=195 Identities=10% Similarity=0.077 Sum_probs=154.4
Q ss_pred chhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044131 446 NIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522 (784)
Q Consensus 446 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 522 (784)
....+..+...|.+.|++++|...|+++. ..+...|..+...|...|++++|++.|+++.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 45567777888889999999999998875 3467899999999999999999999999999853 3467788889999
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGACMIHKDTNLA 600 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~~~~g~~~~a 600 (784)
+...|++++|.++|+.+.+.. +.+...+..+...+.+.|++++|.+.++++. . +.+..+|..+...+...|+++.|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998642 2346788899999999999999999998863 3 34677999999999999999999
Q ss_pred HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 601 RVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 601 ~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...++++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 221 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID 221 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999998765
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.37 E-value=3.8e-11 Score=131.88 Aligned_cols=338 Identities=11% Similarity=0.028 Sum_probs=165.4
Q ss_pred HHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCCh---HHHHHHhccCCCCCcccHHHHHHHHHcCC-----
Q 044131 117 AASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWV---KSARKVFDKMPEKDTVLWNSMISGLMKNC----- 188 (784)
Q Consensus 117 ~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g----- 188 (784)
...+.|++++|.+++..+.+.| ++..+..|-.+|...|+. ++|.+.|++..+.+...+..|-..+...|
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 3445667777777777777765 223334455556666777 88888888877667777777777566655
Q ss_pred CchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccch---hHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC----Ch
Q 044131 189 CFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQEL---RLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCG----EV 261 (784)
Q Consensus 189 ~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g----~~ 261 (784)
++++|+..|++..+. |... .+..+-..+...+.. ..+.+.+....+.| ++.....|..+|...+ ..
T Consensus 89 ~~~~A~~~~~~Aa~~-g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 89 EHHEAESLLKKAFAN-GEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHT-TCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGH
T ss_pred CHHHHHHHHHHHHHC-CCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCH
Confidence 667888888888775 4322 444444444443332 23444444444444 3556667777777777 45
Q ss_pred HHHHHHHhcCCCCCeeeHHHHHHHHHhCC---CchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHH
Q 044131 262 ERAELLFRDIVRPDLISCNAMISGYTCNG---KTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCL 338 (784)
Q Consensus 262 ~~A~~~f~~~~~~d~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~ 338 (784)
+.|..+++.....+...+..|...|.+.| +.++|++.|++..+.|.
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~------------------------------- 210 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT------------------------------- 210 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-------------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-------------------------------
Confidence 55666666666666668888888888888 78888888888776652
Q ss_pred HhCCCcchHHHHHHHHHHHhc----CCHHHHHHHHhhcCCCChhHHHHHHHH-H--HhCCChhHHHHHHHHHHhCCCCCC
Q 044131 339 KSGIVSNSSVLTALSTVYSRL----NEMEAARKLFDESSEKSLASWNAMIAG-Y--TQNGLTEEAISLFQEMQASKVAPN 411 (784)
Q Consensus 339 ~~g~~~~~~~~~~Li~~y~~~----g~~~~A~~~f~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~pd 411 (784)
++...+..|..+|... ++.++|.+.|+.....+...+..|... | ...+++++|++.|++....| +
T Consensus 211 -----~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~ 282 (452)
T 3e4b_A 211 -----VTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---Q 282 (452)
T ss_dssp -----SCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---C
T ss_pred -----HHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---C
Confidence 2222223333344332 455555555555442234445554444 2 23455666666666655544 3
Q ss_pred HHHHHHHHHHHhhhC-----chHHHHHHHHHHHHcCCCCchhhHhHHHHHHHh----cCCHHHHHHHHhhcCC-CCHHHH
Q 044131 412 PVTVSSILSACAQLG-----AISLGKWVHELVKSRNFESNIYVSTALIDMYAK----CGNIVEARELFDLMSH-KSEVTW 481 (784)
Q Consensus 412 ~~t~~~ll~a~~~~~-----~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k----~g~~~~A~~~f~~~~~-~~~~~~ 481 (784)
...+..+-..+. .| +.++|...+.... +.++.....|..+|.. ..++++|...|++..+ .+....
T Consensus 283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~ 357 (452)
T 3e4b_A 283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSAD 357 (452)
T ss_dssp HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHH
T ss_pred HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHH
Confidence 333333333332 22 4444444444443 1233334444444443 1244445544444332 223333
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 044131 482 NTMISGYGL----HGHGLEALQLFSEMLHSG 508 (784)
Q Consensus 482 ~~li~~~~~----~g~~~~A~~~~~~m~~~g 508 (784)
..|...|.. ..+..+|...|++..+.|
T Consensus 358 ~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 358 FAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 333333332 234455555555555444
No 54
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.35 E-value=5.5e-11 Score=126.74 Aligned_cols=223 Identities=9% Similarity=0.039 Sum_probs=191.3
Q ss_pred HHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCC-HHHHHHHHhhcC---CCCHHHHHHHHHHH
Q 044131 413 VTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGN-IVEARELFDLMS---HKSEVTWNTMISGY 488 (784)
Q Consensus 413 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~-~~~A~~~f~~~~---~~~~~~~~~li~~~ 488 (784)
..+..+...+...|+++.|...+..+++.. +.+..+++.+...|.+.|+ +++|+..|+++. ..+...|+.+...|
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456666677888999999999999999876 5678889999999999997 999999999886 35788999999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHh-cCCHH
Q 044131 489 GLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGR-AGQLE 566 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r-~g~~~ 566 (784)
...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++++. .|+ ...|+.+..+|.+ .|..+
T Consensus 177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcch
Confidence 99999999999999999853 336678899999999999999999999999854 565 7789999999999 67768
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC--------
Q 044131 567 KA-----LEFIKGL-AVEP-GPAVWGALLGACMIHK--DTNLARVASEKLFELDPENVGYHVLLSNIYSAER-------- 629 (784)
Q Consensus 567 eA-----~~~~~~m-~~~p-~~~~~~~ll~a~~~~g--~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g-------- 629 (784)
+| ++.+++. .+.| +...|..+...+...| +.+.|...++++ +.+|+++..+..|+.+|...|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 88 4666665 3556 5679999999999888 689999999998 999999999999999999975
Q ss_pred -ChHHHHHHHHHH
Q 044131 630 -DYLQAATVRQVV 641 (784)
Q Consensus 630 -~~~~a~~~~~~m 641 (784)
..++|.++++.+
T Consensus 332 ~~~~~A~~~~~~l 344 (382)
T 2h6f_A 332 DILNKALELCEIL 344 (382)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 358999999887
No 55
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.35 E-value=2.5e-10 Score=115.88 Aligned_cols=226 Identities=10% Similarity=0.005 Sum_probs=180.9
Q ss_pred hhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCC--CC----hhHHHHHHH
Q 044131 312 STIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSE--KS----LASWNAMIA 385 (784)
Q Consensus 312 ~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~--~~----~~~~~~li~ 385 (784)
..+......+...|+++.|...+..+++.. +.+..++..+...|...|++++|...|+.... .+ ..+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 345556677889999999999999999875 34566888899999999999999999987654 22 235899999
Q ss_pred HHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHH-HHHHhcCCHH
Q 044131 386 GYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALI-DMYAKCGNIV 464 (784)
Q Consensus 386 ~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li-~~y~k~g~~~ 464 (784)
.|.+.|++++|++.|++..... +.+...+..+...+...|++++|...+..+++.. +.+..++..+. ..|. .++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~~~ 159 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKEYV 159 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTCHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHHHH
Confidence 9999999999999999998853 3355788889999999999999999999998763 45677777777 5555 46999
Q ss_pred HHHHHHhhcC---CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCCH------HHHHHHHHHHHccCCHHH
Q 044131 465 EARELFDLMS---HKSEVTWNTMISGYGLHGH---GLEALQLFSEMLHSG-IRPSG------VTFLSVLYACSHAGLVRE 531 (784)
Q Consensus 465 ~A~~~f~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~pd~------~t~~~ll~a~~~~g~~~~ 531 (784)
+|...|+++. ..+...|..+...+...|+ .++|+..|++..+.. -.|+. .+|..+...+...|++++
T Consensus 160 ~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999876 3457788888899998888 888999999988742 12432 456667777888888888
Q ss_pred HHHHHHHhHH
Q 044131 532 GDEIFQSMIH 541 (784)
Q Consensus 532 a~~~~~~m~~ 541 (784)
|.++|++..+
T Consensus 240 A~~~~~~al~ 249 (272)
T 3u4t_A 240 ADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888774
No 56
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.34 E-value=1.2e-11 Score=134.29 Aligned_cols=259 Identities=15% Similarity=0.006 Sum_probs=170.0
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHhhhCchHHHHHHHHHHHHc----C-CCCchhhHhH
Q 044131 383 MIAGYTQNGLTEEAISLFQEMQASKVAPN-P----VTVSSILSACAQLGAISLGKWVHELVKSR----N-FESNIYVSTA 452 (784)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~~pd-~----~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g-~~~~~~~~~~ 452 (784)
+...+.+.|++++|+..|++..... |+ . ..+..+...+...|+++.|...+..+.+. + .+....++..
T Consensus 54 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 54 EGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 3444555566666666665555532 22 1 24444555555566666666655555432 1 1123455666
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC---------CCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHH
Q 044131 453 LIDMYAKCGNIVEARELFDLMSH---------KSEVTWNTMISGYGLHGH-----------------GLEALQLFSEMLH 506 (784)
Q Consensus 453 Li~~y~k~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~ 506 (784)
+...|...|++++|...|++..+ ....+|..+...|...|+ +++|++.|++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 67777777777777777766542 123467777777788888 7888887777654
Q ss_pred C----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC-
Q 044131 507 S----GIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALEFIKGLA- 576 (784)
Q Consensus 507 ~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m~- 576 (784)
. +-.| ...++..+...+...|++++|.++|++..+...-.++ ...+..+...|...|++++|.+.+++.-
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 1111 1235667777888888888888888877643211112 2367788888889999999988887651
Q ss_pred C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 577 V---EPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPEN------VGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 577 ~---~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
. ..+ ..+|..+...+...|+++.|...+++++++.++. ...+..++.+|...|++++|.+.++...+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 111 4577888888999999999999999998865433 34788899999999999999999877654
No 57
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.33 E-value=3.5e-09 Score=120.43 Aligned_cols=453 Identities=11% Similarity=0.047 Sum_probs=279.2
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcCCC---chHHHHHHHHH
Q 044131 127 GVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKNCC---FQDSIWVFGDM 200 (784)
Q Consensus 127 a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~l~~~m 200 (784)
-...++..++.. +.|...|..++..+.+.+.++.|+.+|+++.. .....|..-+..-.+.|. .+.+.++|++.
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 334455555554 46888999999999999999999999998864 355678888888888888 99999999998
Q ss_pred HHcCCCCCChhhHHhHHHHHhcccch--------hHHHHHHHHHHH-hCC-CCc-hhHHHHHHHHHHh---------cCC
Q 044131 201 VRNGGTWLDSTSVAAVLPAVAEVQEL--------RLGMEIQCLGLK-LGF-HDH-VYVLTGLVSFYSK---------CGE 260 (784)
Q Consensus 201 ~~~~g~~pd~~t~~~ll~a~~~~~~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~li~~y~~---------~g~ 260 (784)
.......|+...|..-+.-....++. +..+++|+.++. .|. .++ ..+|...+..... .++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 86411137777776666655444432 334577777665 355 453 4577777765442 234
Q ss_pred hHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHh
Q 044131 261 VERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKS 340 (784)
Q Consensus 261 ~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~ 340 (784)
++.++++|++...-....+..+- ..|...... + +..+-..++.-. ..+++.|+..+....+.
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w-------------~~Y~~fe~~-~--~~~~a~~~~~e~--~~~y~~Ar~~~~e~~~~ 271 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMW-------------QRYTQWEQD-V--NQLTARRHIGEL--SAQYMNARSLYQDWLNI 271 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHH-------------HHHHHHHHH-H--CTTTHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccHHHHHHH-------------HHHHHHHHh-c--CcchHHHHHHHh--hHHHHHHHHHHHHHHHH
Confidence 56666666665431111111111 111111110 0 000000000000 00111122222111110
Q ss_pred --CCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCC------ChhHHHHHHHHHHhCCC-------hhHHHHHHHHHHh
Q 044131 341 --GIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEK------SLASWNAMIAGYTQNGL-------TEEAISLFQEMQA 405 (784)
Q Consensus 341 --g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~------~~~~~~~li~~~~~~g~-------~~~A~~l~~~m~~ 405 (784)
++... +-+ . ... ......+.. ....|...|.---.++. .+.+..+|++...
T Consensus 272 ~~~l~r~----------~p~-~-~~~--~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~ 337 (679)
T 4e6h_A 272 TKGLKRN----------LPI-T-LNQ--ATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQ 337 (679)
T ss_dssp TTTCCCC----------CCS-S-STT--CCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred HHhHhhc----------ccc-c-ccc--chhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHH
Confidence 00000 000 0 000 000000000 12345555543333321 2335567777766
Q ss_pred CCCCCCHHHHHHHHHHHhhhCchHHHH-HHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---------
Q 044131 406 SKVAPNPVTVSSILSACAQLGAISLGK-WVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--------- 475 (784)
Q Consensus 406 ~g~~pd~~t~~~ll~a~~~~~~~~~a~-~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--------- 475 (784)
. ..-+...|.....-+...|+.+.|. .+++.++.. .+.+..++-.++..+-+.|+++.|+++|+.+..
T Consensus 338 ~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~ 415 (679)
T 4e6h_A 338 H-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAAL 415 (679)
T ss_dssp H-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhh
Confidence 4 3446667777777777888888996 999999875 366777788899999999999999999988753
Q ss_pred ----CC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHc-cCCHHHHHHHHH
Q 044131 476 ----KS------------EVTWNTMISGYGLHGHGLEALQLFSEMLHS-GIRPSGVTFLSVLYACSH-AGLVREGDEIFQ 537 (784)
Q Consensus 476 ----~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~pd~~t~~~ll~a~~~-~g~~~~a~~~~~ 537 (784)
|+ ...|-..+....+.|..+.|..+|.+..+. + .+....|......-.+ .++.+.|..+|+
T Consensus 416 ~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife 494 (679)
T 4e6h_A 416 MEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLE 494 (679)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred hhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 21 236888888888899999999999999986 2 1223334332222223 355999999999
Q ss_pred HhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 044131 538 SMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEP----GPAVWGALLGACMIHKDTNLARVASEKLFELDP 612 (784)
Q Consensus 538 ~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p 612 (784)
..++.++ -+...+...++.+...|+.+.|..+|++.- ..| ....|...+.--..+|+.+.+..+.+++.+..|
T Consensus 495 ~~Lk~~p--~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 495 LGLKYFA--TDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHCC--CchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9997643 235567788999999999999999999863 233 245999999999999999999999999999999
Q ss_pred CCcch
Q 044131 613 ENVGY 617 (784)
Q Consensus 613 ~~~~~ 617 (784)
+++..
T Consensus 573 ~~~~~ 577 (679)
T 4e6h_A 573 EVNKL 577 (679)
T ss_dssp TCCHH
T ss_pred CCcHH
Confidence 87643
No 58
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.33 E-value=2.9e-11 Score=130.64 Aligned_cols=263 Identities=16% Similarity=0.030 Sum_probs=153.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhhCchHHHHHHHHHHHHc----CCC-CchhhH
Q 044131 380 WNAMIAGYTQNGLTEEAISLFQEMQASKVAPN----PVTVSSILSACAQLGAISLGKWVHELVKSR----NFE-SNIYVS 450 (784)
Q Consensus 380 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~~ 450 (784)
|......+...|++++|+..|++..... +.+ ...+..+...+...|+++.|...+..+.+. +-. ....++
T Consensus 12 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 12 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3333444444444445544444444431 111 123333444444445555554444443321 111 123345
Q ss_pred hHHHHHHHhcCCHHHHHHHHhhcCC-----CC----HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 044131 451 TALIDMYAKCGNIVEARELFDLMSH-----KS----EVTWNTMISGYGLHGH--------------------GLEALQLF 501 (784)
Q Consensus 451 ~~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~ 501 (784)
..+...|...|++++|...|++..+ ++ ..+|..+...|...|+ +++|++.|
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 5566666666666666666655431 11 3366666667777777 77777777
Q ss_pred HHHHHC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHH
Q 044131 502 SEMLHS----GIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALEFI 572 (784)
Q Consensus 502 ~~m~~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~ 572 (784)
++..+. +-.|. ..++..+...+...|++++|..+|+...+...-.++ ...+..+...|...|++++|.+.+
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 250 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 250 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 665431 11111 234666667777778888888777776543211122 236777777788888888888777
Q ss_pred HhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------cchHHHHHHHHHhcCChHHHHHHH
Q 044131 573 KGLA----VEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPEN------VGYHVLLSNIYSAERDYLQAATVR 638 (784)
Q Consensus 573 ~~m~----~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~ 638 (784)
++.- -.++ ..++..+...+...|+++.|...+++++++.|.. +..+..++.+|...|++++|.+.+
T Consensus 251 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 330 (406)
T 3sf4_A 251 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFA 330 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 6541 1112 4467777788888888888888888888764433 456778888888888888888887
Q ss_pred HHHHh
Q 044131 639 QVVKK 643 (784)
Q Consensus 639 ~~m~~ 643 (784)
+...+
T Consensus 331 ~~al~ 335 (406)
T 3sf4_A 331 EKHLE 335 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76543
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.33 E-value=5.3e-12 Score=139.70 Aligned_cols=206 Identities=12% Similarity=-0.010 Sum_probs=170.0
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCH-HHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044131 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNI-VEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSE 503 (784)
Q Consensus 428 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~-~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (784)
++.+.+.+....+.. +.+...+..+...|...|++ ++|.+.|++.. ..+...|..+...|...|++++|++.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444443322 34667777777888888888 88888887765 34577899999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcc---------CCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhc--------CCH
Q 044131 504 MLHSGIRPSGVTFLSVLYACSHA---------GLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRA--------GQL 565 (784)
Q Consensus 504 m~~~g~~pd~~t~~~ll~a~~~~---------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~--------g~~ 565 (784)
..+. .|+...+..+...+... |++++|.+.|++..+. .|+ ...|..+..+|.+. |++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9884 57778888888889888 9999999999998754 454 77888899999888 999
Q ss_pred HHHHHHHHhCC-CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 566 EKALEFIKGLA-VEP----GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 566 ~eA~~~~~~m~-~~p----~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
++|.+.+++.- ..| +...|..+..++...|++++|...++++++++|+++..+..++.++...|++++|.+.+.
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998863 455 678999999999999999999999999999999999999999999999999999987553
No 60
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.32 E-value=3.8e-11 Score=125.60 Aligned_cols=259 Identities=16% Similarity=0.038 Sum_probs=167.3
Q ss_pred HHHHHhCCChhHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhhCchHHHHHHHHHHHHc----CCC-CchhhHhHHH
Q 044131 384 IAGYTQNGLTEEAISLFQEMQASKVAPN----PVTVSSILSACAQLGAISLGKWVHELVKSR----NFE-SNIYVSTALI 454 (784)
Q Consensus 384 i~~~~~~g~~~~A~~l~~~m~~~g~~pd----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~~~~~Li 454 (784)
...+...|++++|+..|+++.... +.+ ...+..+...+...|+++.|...+..+.+. +-. ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 344455555555555555555432 111 133444444555555555555555544322 111 1244556667
Q ss_pred HHHHhcCCHHHHHHHHhhcCC-----CC----HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Q 044131 455 DMYAKCGNIVEARELFDLMSH-----KS----EVTWNTMISGYGLHGH--------------------GLEALQLFSEML 505 (784)
Q Consensus 455 ~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~ 505 (784)
..|...|++++|...|++..+ ++ ..++..+...|...|+ +++|++.+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 777777777777777766431 22 3366777777777777 788888777765
Q ss_pred HC----CCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC
Q 044131 506 HS----GIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALEFIKGLA 576 (784)
Q Consensus 506 ~~----g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m~ 576 (784)
.. +-.|. ..++..+...+...|++++|.++++...+...-.++ ...+..+...+.+.|++++|.+.+++.-
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 42 11111 235667777788888888888888877643211112 3367788888889999999988887651
Q ss_pred ----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 577 ----VEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPEN------VGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 577 ----~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
-.++ ..++..+...+...|+++.|...+++++++.|.. ...+..++.+|...|++++|.+.++...
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 1122 4477888888999999999999999998865543 3477889999999999999999988776
Q ss_pred h
Q 044131 643 K 643 (784)
Q Consensus 643 ~ 643 (784)
+
T Consensus 331 ~ 331 (338)
T 3ro2_A 331 E 331 (338)
T ss_dssp H
T ss_pred H
Confidence 5
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.31 E-value=3.6e-11 Score=122.24 Aligned_cols=217 Identities=11% Similarity=-0.006 Sum_probs=180.1
Q ss_pred hhhCchHHHHHHHHHHHHcCC---CCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHH
Q 044131 423 AQLGAISLGKWVHELVKSRNF---ESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLE 496 (784)
Q Consensus 423 ~~~~~~~~a~~i~~~~~~~g~---~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~ 496 (784)
...+++++|...+..+.+... +.+..++..+...|...|++++|...|+++. ..+..+|..+...|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 345789999999999987632 2256788899999999999999999999876 3568899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-
Q 044131 497 ALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL- 575 (784)
Q Consensus 497 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m- 575 (784)
|++.|+++.+.. +.+..++..+...+...|++++|..+|+.+.+. .|+..........+.+.|++++|...+++.
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999999853 335778889999999999999999999999854 566555555666677889999999999665
Q ss_pred C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC----CcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 576 A-VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPE----NVGYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 576 ~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~----~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
. .+++...|. ++..+...++.+.|...++++++..|. ++..+..++.+|...|++++|.+.++...+.
T Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 334444554 777788888999999999999988774 3678999999999999999999999988764
No 62
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.31 E-value=1.3e-10 Score=110.39 Aligned_cols=163 Identities=12% Similarity=0.041 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHH
Q 044131 477 SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACM 555 (784)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~l 555 (784)
+...|..+...|.+.|++++|++.|++.++.. +-+..++..+..++...|++++|...+...... .|+ ...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHHH
Confidence 45667777777778888888888888877742 224556777777778888888888888777643 333 5566667
Q ss_pred HHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 044131 556 VDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQ 633 (784)
Q Consensus 556 v~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 633 (784)
...+...+++++|.+.+++.. ..| +..+|..+..++...|++++|+..++++++++|+++..+..++.+|...|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 777788888888888877652 334 566888888888889999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHh
Q 044131 634 AATVRQVVKK 643 (784)
Q Consensus 634 a~~~~~~m~~ 643 (784)
|.+.++...+
T Consensus 160 A~~~~~~al~ 169 (184)
T 3vtx_A 160 AVKYFKKALE 169 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9988877654
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.29 E-value=1.9e-11 Score=132.08 Aligned_cols=254 Identities=11% Similarity=-0.002 Sum_probs=156.1
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhhhCchHHHHHHHHHHHHc----CCC-Cchh
Q 044131 379 SWNAMIAGYTQNGLTEEAISLFQEMQAS----KVAPN-PVTVSSILSACAQLGAISLGKWVHELVKSR----NFE-SNIY 448 (784)
Q Consensus 379 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~-~~~~ 448 (784)
.|..+...|...|++++|+..|++.... +-.|. ..++..+...+...|+++.|...+..+.+. +-. ....
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 128 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence 3444444444555555555544443221 11111 223334444444555555555554444322 100 0133
Q ss_pred hHhHHHHHHHhcCC--------------------HHHHHHHHhhcCC-----C----CHHHHHHHHHHHHHcCCHHHHHH
Q 044131 449 VSTALIDMYAKCGN--------------------IVEARELFDLMSH-----K----SEVTWNTMISGYGLHGHGLEALQ 499 (784)
Q Consensus 449 ~~~~Li~~y~k~g~--------------------~~~A~~~f~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~ 499 (784)
++..+...|...|+ +++|...|++... . ...+|..+...|...|++++|+.
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 45556666666666 6666666554321 1 23467777788888888888888
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHH
Q 044131 500 LFSEMLHSGI-RPS----GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALE 570 (784)
Q Consensus 500 ~~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~ 570 (784)
.|++..+... .++ ..++..+...+...|++++|..+++...+...-.++ ...+..+...|.+.|++++|.+
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 8888765210 122 236777778888889999998888877643211112 4567788888999999999988
Q ss_pred HHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC------CCCcchHHHHHHHHHhcCChH
Q 044131 571 FIKGLA----VEPG----PAVWGALLGACMIHKDTNLARVASEKLFELD------PENVGYHVLLSNIYSAERDYL 632 (784)
Q Consensus 571 ~~~~m~----~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~y~~~g~~~ 632 (784)
.+++.- -.++ ..+|..+...+...|+++.|...+++++++. |.....+..++.+|...|+..
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 887651 1122 4478888889999999999999999998863 333556778888888888764
No 64
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.26 E-value=7.5e-10 Score=114.98 Aligned_cols=220 Identities=10% Similarity=0.060 Sum_probs=162.6
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHh-------hhCch-------HHHHHHHHHHHHcCCCCchhhHhHHHHHHHh
Q 044131 394 EEAISLFQEMQASKVAPNPVTVSSILSACA-------QLGAI-------SLGKWVHELVKSRNFESNIYVSTALIDMYAK 459 (784)
Q Consensus 394 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~-------~~~~~-------~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k 459 (784)
++|+..|++..... +-+...|..+...+. ..|+. ++|..+++.+++.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777766531 224445555554443 34664 7888888888874224456688888888889
Q ss_pred cCCHHHHHHHHhhcCC--C-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCCHHHHHH
Q 044131 460 CGNIVEARELFDLMSH--K-SEV-TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACS-HAGLVREGDE 534 (784)
Q Consensus 460 ~g~~~~A~~~f~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~-~~g~~~~a~~ 534 (784)
.|++++|..+|++..+ | +.. .|..+...+.+.|+.++|..+|++..+.. +++...|........ ..|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999988763 3 343 89999999999999999999999998853 334445544433322 3699999999
Q ss_pred HHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 535 IFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA----VEP--GPAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 535 ~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~----~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
+|+..++... -+...|..+++.+.+.|++++|..++++.- +.| ....|..++.....+|+.+.|..++++++
T Consensus 191 ~~~~al~~~p--~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKYG--DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhCC--CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999886531 246788889999999999999999998762 355 36689999999999999999999999999
Q ss_pred cCCCCCcch
Q 044131 609 ELDPENVGY 617 (784)
Q Consensus 609 ~l~p~~~~~ 617 (784)
+..|+++..
T Consensus 269 ~~~p~~~~~ 277 (308)
T 2ond_A 269 TAFREEYEG 277 (308)
T ss_dssp HHTTTTTSS
T ss_pred HHccccccc
Confidence 999986643
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.24 E-value=4.1e-11 Score=129.99 Aligned_cols=265 Identities=12% Similarity=0.039 Sum_probs=180.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC---CCh----hHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCC-CHHHHH
Q 044131 349 LTALSTVYSRLNEMEAARKLFDESSE---KSL----ASWNAMIAGYTQNGLTEEAISLFQEMQAS----KVAP-NPVTVS 416 (784)
Q Consensus 349 ~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-d~~t~~ 416 (784)
+..+...|...|++++|...|++... .+. ..|..+...|...|++++|+..|++.... +-.| ....+.
T Consensus 51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 130 (411)
T 4a1s_A 51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG 130 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence 34455566677777777777765432 222 35666667777777777777777766442 1112 234555
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHHc----C-CCCchhhHhHHHHHHHhcCC-----------------HHHHHHHHhhcC
Q 044131 417 SILSACAQLGAISLGKWVHELVKSR----N-FESNIYVSTALIDMYAKCGN-----------------IVEARELFDLMS 474 (784)
Q Consensus 417 ~ll~a~~~~~~~~~a~~i~~~~~~~----g-~~~~~~~~~~Li~~y~k~g~-----------------~~~A~~~f~~~~ 474 (784)
.+...+...|+++.|...+..+.+. + .+....++..+...|...|+ +++|...|++..
T Consensus 131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al 210 (411)
T 4a1s_A 131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence 5666667777777777777666543 1 12234566777778888888 788877776643
Q ss_pred C---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 475 H---------KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGI-RPS----GVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 475 ~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
+ ....+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|.++|+...
T Consensus 211 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 211 KLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 1 1234777888888999999999999988876311 112 2367778888999999999999998876
Q ss_pred HhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 541 HDHGFKPL----AEHYACMVDILGRAGQLEKALEFIKGLA-V---EPG----PAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 541 ~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~---~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
+...-..+ ...+..+..+|.+.|++++|.+.+++.- + .++ ..++..+...+...|+.+.|...+++++
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 43211111 4677888899999999999999987651 1 112 3477888889999999999999999999
Q ss_pred cCCCC
Q 044131 609 ELDPE 613 (784)
Q Consensus 609 ~l~p~ 613 (784)
++.+.
T Consensus 371 ~~~~~ 375 (411)
T 4a1s_A 371 QLAXX 375 (411)
T ss_dssp HHCCH
T ss_pred HHHhh
Confidence 87654
No 66
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.23 E-value=7.4e-11 Score=135.88 Aligned_cols=161 Identities=15% Similarity=0.150 Sum_probs=133.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHH
Q 044131 477 SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYAC 554 (784)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~ 554 (784)
+..+|+.|...|.+.|++++|++.|++.++. .|+ ..++..+..++...|++++|.+.|++.++ +.|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~---l~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR---ISPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHH
Confidence 3557788888888888888888888888873 454 56777888888888888888888888774 3565 678888
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 044131 555 MVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYL 632 (784)
Q Consensus 555 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~ 632 (784)
+..+|.+.|++++|++.+++. .+.| +...|..|..++...|++++|+..++++++++|+++..+..|+.+|...|+|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 888888889999998888775 3556 46689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 044131 633 QAATVRQVVK 642 (784)
Q Consensus 633 ~a~~~~~~m~ 642 (784)
+|.+.+++..
T Consensus 163 ~A~~~~~kal 172 (723)
T 4gyw_A 163 DYDERMKKLV 172 (723)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988876653
No 67
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.23 E-value=1.9e-10 Score=109.24 Aligned_cols=167 Identities=13% Similarity=0.045 Sum_probs=140.4
Q ss_pred CchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 044131 445 SNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLY 521 (784)
Q Consensus 445 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~ 521 (784)
.+..+|..|...|.+.|++++|.+.|++.. ..+..+|..+...|.+.|++++|+..+++..... +.+...+..+..
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 356788889999999999999999998875 3467789999999999999999999999988753 334566777778
Q ss_pred HHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 044131 522 ACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTN 598 (784)
Q Consensus 522 a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~ 598 (784)
.+...++.+.+.+.+....+. .|+ ...+..+...|.+.|++++|++.+++. ...| ++.+|..+..++...|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 888999999999999988753 444 677888999999999999999999876 3445 5779999999999999999
Q ss_pred HHHHHHHHHhcCCCCCc
Q 044131 599 LARVASEKLFELDPENV 615 (784)
Q Consensus 599 ~a~~~~~~~~~l~p~~~ 615 (784)
+|...++++++++|+++
T Consensus 159 ~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCH
Confidence 99999999999999864
No 68
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.21 E-value=2.6e-08 Score=113.34 Aligned_cols=225 Identities=8% Similarity=0.014 Sum_probs=134.4
Q ss_pred HHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHH-HHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhC
Q 044131 331 NCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAAR-KLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQAS 406 (784)
Q Consensus 331 ~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~-~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 406 (784)
..++..++.. ++.+..+|-..+..+...|+.++|. ++|++.. ..+...|-..+...-+.|++++|.++|+++...
T Consensus 329 ~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~ 407 (679)
T 4e6h_A 329 TYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDR 407 (679)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3445555443 2345556666666666666666664 6665432 224445555666666666666666666666542
Q ss_pred C---------CCCC------------HHHHHHHHHHHhhhCchHHHHHHHHHHHHc-CCCCchhhHhHHHHHHHhcC-CH
Q 044131 407 K---------VAPN------------PVTVSSILSACAQLGAISLGKWVHELVKSR-NFESNIYVSTALIDMYAKCG-NI 463 (784)
Q Consensus 407 g---------~~pd------------~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~-g~~~~~~~~~~Li~~y~k~g-~~ 463 (784)
. -.|+ ...|...+....+.+.++.|+.++..+.+. + .....+|...+.+-.++| +.
T Consensus 408 l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 408 IHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCC
T ss_pred HHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCH
Confidence 1 0131 234666666666777788888888887765 2 112333333333444444 47
Q ss_pred HHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHH
Q 044131 464 VEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP--SGVTFLSVLYACSHAGLVREGDEIFQS 538 (784)
Q Consensus 464 ~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--d~~t~~~ll~a~~~~g~~~~a~~~~~~ 538 (784)
+.|+++|+... ..+...|...+.-....|+.+.|..+|++.......+ ....|...+.--...|+.+.+.++.++
T Consensus 487 e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R 566 (679)
T 4e6h_A 487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR 566 (679)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888887765 2456667777777777788888888888877653222 223566666666677888888888888
Q ss_pred hHHhcCCCCCcchHHHHHHHHH
Q 044131 539 MIHDHGFKPLAEHYACMVDILG 560 (784)
Q Consensus 539 m~~~~~~~p~~~~~~~lv~~l~ 560 (784)
+.+. .|+......+++-|.
T Consensus 567 ~~~~---~P~~~~~~~f~~ry~ 585 (679)
T 4e6h_A 567 FFEK---FPEVNKLEEFTNKYK 585 (679)
T ss_dssp HHHH---STTCCHHHHHHHHTC
T ss_pred HHHh---CCCCcHHHHHHHHhc
Confidence 8755 355555555566554
No 69
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.17 E-value=4.9e-10 Score=117.00 Aligned_cols=275 Identities=12% Similarity=0.026 Sum_probs=144.7
Q ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHh
Q 044131 279 CNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSR 358 (784)
Q Consensus 279 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~ 358 (784)
+......+...|++++|+..|++..... |+.... -..++..+...|..
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~------------------------------~~~~~~~l~~~~~~ 55 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKT------------------------------LSAIYSQLGNAYFY 55 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHH------------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC--cccHHH------------------------------HHHHHHHHHHHHHH
Confidence 3344456667777777777777776642 221000 02334455555666
Q ss_pred cCCHHHHHHHHhhcCC---------CChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhh
Q 044131 359 LNEMEAARKLFDESSE---------KSLASWNAMIAGYTQNGLTEEAISLFQEMQASKV-APN----PVTVSSILSACAQ 424 (784)
Q Consensus 359 ~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~ 424 (784)
.|++++|...|++... ....+|..+...|...|++++|+..|.+...... .++ ..++..+...+..
T Consensus 56 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 56 LHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHA 135 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 6666666665554321 1133566666677777777777777766543210 011 1244444445555
Q ss_pred hCc--------------------hHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHH
Q 044131 425 LGA--------------------ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--KSEVTWN 482 (784)
Q Consensus 425 ~~~--------------------~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~ 482 (784)
.|+ ++.|...+....+. +..... ....+|.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~----------------------------~~~~~~~~~~~~~~~ 187 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL----------------------------VTALGDRAAQGRAFG 187 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH----------------------------HHHHTCHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH----------------------------HHhcCCHHHHHHHHH
Confidence 555 44444444433221 001100 0122444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHH
Q 044131 483 TMISGYGLHGHGLEALQLFSEMLHSGI-RPS----GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYA 553 (784)
Q Consensus 483 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd----~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~ 553 (784)
.+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|.++++...+...-.++ ...+.
T Consensus 188 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (338)
T 3ro2_A 188 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 267 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 555555555555555555555543110 011 124555555666666666666666655432111111 34566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 554 CMVDILGRAGQLEKALEFIKGLA----VEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m~----~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
.+...|...|++++|.+.+++.- -.++ ..+|..+...+...|+++.|...+++++++.++
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 268 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 66677777777777777766541 0111 336777888888899999999999998887664
No 70
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.16 E-value=1.8e-09 Score=112.00 Aligned_cols=210 Identities=11% Similarity=0.014 Sum_probs=169.7
Q ss_pred HHHHHHHHHHHHcCCCCchhhHhHHHHHHH-------hcCCH-------HHHHHHHhhcCC---C-CHHHHHHHHHHHHH
Q 044131 429 SLGKWVHELVKSRNFESNIYVSTALIDMYA-------KCGNI-------VEARELFDLMSH---K-SEVTWNTMISGYGL 490 (784)
Q Consensus 429 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~-------k~g~~-------~~A~~~f~~~~~---~-~~~~~~~li~~~~~ 490 (784)
+.|..+++++++.. +.++.+|..++..+. +.|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888888763 567778888887776 45886 999999997653 3 56799999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHH-hcCCHH
Q 044131 491 HGHGLEALQLFSEMLHSGIRPSG-V-TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILG-RAGQLE 566 (784)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~pd~-~-t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~-r~g~~~ 566 (784)
.|++++|.++|++..+ +.|+. . .|..+...+...|++++|..+|++..+ ..|+ ...|...+.... ..|+.+
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~---~~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE---DARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT---STTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh---cCCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 56653 3 788889999999999999999999974 3444 444544433322 369999
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC---CCC-CcchHHHHHHHHHhcCChHHHHHHHHH
Q 044131 567 KALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFEL---DPE-NVGYHVLLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 567 eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l---~p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~ 640 (784)
+|.+++++.- ..| ++..|..++..+...|+.+.|..+++++++. .|+ ....+..+++.+...|++++|..+.+.
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998862 233 6779999999999999999999999999995 554 566888999999999999999999888
Q ss_pred HHhC
Q 044131 641 VKKR 644 (784)
Q Consensus 641 m~~~ 644 (784)
+.+.
T Consensus 267 a~~~ 270 (308)
T 2ond_A 267 RFTA 270 (308)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.16 E-value=8.3e-10 Score=104.26 Aligned_cols=158 Identities=13% Similarity=-0.058 Sum_probs=93.1
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 044131 449 VSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSH 525 (784)
Q Consensus 449 ~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~ 525 (784)
.+..+...|...|++++|...|+++.+ .+...|..+...|...|++++|+..|+++.+.. +.+
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~------------- 75 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDN------------- 75 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-------------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC-------------
Confidence 344455555555555555555555542 234455555555555555555555555554431 222
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 044131 526 AGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVA 603 (784)
Q Consensus 526 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~ 603 (784)
...+..+...+...|++++|.+.++++. .+.+..+|..+...+...|+++.|...
T Consensus 76 -----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~ 132 (186)
T 3as5_A 76 -----------------------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132 (186)
T ss_dssp -----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHH
Confidence 3344444445555555555555554431 223455666777777777777777777
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 604 SEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 604 ~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++++++..|+++..+..++.+|...|++++|.+.++...+
T Consensus 133 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777766544
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.16 E-value=8.4e-11 Score=121.78 Aligned_cols=95 Identities=15% Similarity=0.145 Sum_probs=54.8
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSH-----------KSEVTWNTMISGYGLHGHGLEALQLFSEMLHS------GI 509 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 509 (784)
..++..+...|...|++++|...|++..+ .....|..+...|...|++++|+++|+++.+. +-
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 190 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPD 190 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 34455555566666666666665554431 12335666666666677777777777666553 11
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 044131 510 RPS-GVTFLSVLYACSHAGLVREGDEIFQSMIH 541 (784)
Q Consensus 510 ~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 541 (784)
.|+ ..++..+...+...|++++|.++|+.+.+
T Consensus 191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222 23455566666677777777777766653
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.16 E-value=1.4e-09 Score=116.76 Aligned_cols=222 Identities=9% Similarity=0.006 Sum_probs=138.2
Q ss_pred HHhhhCchHHHHHHHHHHHHc----CCCC-chhhHhHHHHHHHhcCCHHHHHHHHhhcCC-----C-----CHHHHHHHH
Q 044131 421 ACAQLGAISLGKWVHELVKSR----NFES-NIYVSTALIDMYAKCGNIVEARELFDLMSH-----K-----SEVTWNTMI 485 (784)
Q Consensus 421 a~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~-----~~~~~~~li 485 (784)
.+...|+++.|...+..+.+. +-++ ...++..+...|...|++++|...|++..+ + ...+++.+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 445566666666666666543 1111 234566666677777777777666665431 1 134667777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhc---CCCCC-cchHHHHH
Q 044131 486 SGYGLHGHGLEALQLFSEMLHSGI-RPSG----VTFLSVLYACSHAGLVREGDEIFQSMIHDH---GFKPL-AEHYACMV 556 (784)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~-~pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~~~~~lv 556 (784)
..|...|++++|++.|++..+... .+|. .++..+...+...|++++|.++|++..+-. +..|. ...+..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 777777788887777777664211 1111 356667777777888888888777765421 22132 45677777
Q ss_pred HHHHhcCCHHHHHHHHHhCC-C-----CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 557 DILGRAGQLEKALEFIKGLA-V-----EPG-PAVWGALLGACMIHKD---TNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m~-~-----~p~-~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
..|.+.|++++|.+.+++.- + .|. ...+..+...+...|+ .+.|...+++. ...|.....+..|+.+|.
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~ 350 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYH 350 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHH
Confidence 77888888888877776541 1 122 1234556666677777 66666666665 334455557778888888
Q ss_pred hcCChHHHHHHHHHHHh
Q 044131 627 AERDYLQAATVRQVVKK 643 (784)
Q Consensus 627 ~~g~~~~a~~~~~~m~~ 643 (784)
..|++++|.+.++...+
T Consensus 351 ~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 351 ERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88888888888776543
No 74
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.15 E-value=1.1e-09 Score=117.50 Aligned_cols=229 Identities=7% Similarity=-0.034 Sum_probs=169.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHhhhCchHHHHHHHHHHHHcC--C----CCchhhHh
Q 044131 383 MIAGYTQNGLTEEAISLFQEMQASK-VAPN----PVTVSSILSACAQLGAISLGKWVHELVKSRN--F----ESNIYVST 451 (784)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g-~~pd----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~----~~~~~~~~ 451 (784)
....+...|++++|+..|++....- -.+| ..++..+...+...|+++.|...+..+.+.- . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4445667788888888888776531 0122 3456666777777888888888777776431 1 11245677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 044131 452 ALIDMYAKCGNIVEARELFDLMSH-----KS----EVTWNTMISGYGLHGHGLEALQLFSEMLHS----GI-RPSGVTFL 517 (784)
Q Consensus 452 ~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~pd~~t~~ 517 (784)
.+...|...|++++|...|++..+ ++ ..+|+.+...|...|++++|++.|++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788889999999999988887652 22 247888999999999999999999998872 33 33355788
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCC---cchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 044131 518 SVLYACSHAGLVREGDEIFQSMIHDHGFKPL---AEHYACMVDILGRAGQ---LEKALEFIKGLAVEPGPA-VWGALLGA 590 (784)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~lv~~l~r~g~---~~eA~~~~~~m~~~p~~~-~~~~ll~a 590 (784)
.+...+...|++++|.++++...+...-.++ ...+..+..++...|+ +++|..++++.+..|+.. ++..|...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8889999999999999999987643211112 3346778889999999 999999999987555443 77788889
Q ss_pred HHhcCCHHHHHHHHHHHhcCC
Q 044131 591 CMIHKDTNLARVASEKLFELD 611 (784)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~l~ 611 (784)
+...|+.+.|...+++++++.
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
No 75
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.15 E-value=7.7e-11 Score=122.06 Aligned_cols=239 Identities=15% Similarity=0.135 Sum_probs=156.5
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHH
Q 044131 377 LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDM 456 (784)
Q Consensus 377 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 456 (784)
..+|..+...|...|++++|+.+|+++.... ........+....++..+...
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~~~la~~ 78 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDL----------------------------EKTSGHDHPDVATMLNILALV 78 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------HHHHCSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------------------HHHcCCCCHHHHHHHHHHHHH
Confidence 3467777778888888888888887776420 000000111223445556666
Q ss_pred HHhcCCHHHHHHHHhhcCC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCCC-HHHHHH
Q 044131 457 YAKCGNIVEARELFDLMSH-----------KSEVTWNTMISGYGLHGHGLEALQLFSEMLHS------GIRPS-GVTFLS 518 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~pd-~~t~~~ 518 (784)
|...|++++|...|++... ....+|..+...|...|++++|+..|+++.+. +-.|+ ...+..
T Consensus 79 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 79 YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 6666666666666655431 23457888999999999999999999998874 22233 346778
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhc-----CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC--
Q 044131 519 VLYACSHAGLVREGDEIFQSMIHDH-----GFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA----------VEPG-- 580 (784)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~----------~~p~-- 580 (784)
+...+...|++++|.++|+.+.+.. +..|. ...+..+...|.+.|++++|.+.++++. ..|.
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 8889999999999999999987542 11232 5678889999999999999999987652 1111
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 581 -----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 581 -----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...+..+...+...+.+..+...++++.+..|..+..+..++.+|...|++++|.+.++...+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 112233333444556667777788888888899999999999999999999999999887643
No 76
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.15 E-value=8.8e-10 Score=108.73 Aligned_cols=150 Identities=9% Similarity=-0.030 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVD 557 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~ 557 (784)
..|......|...|++++|++.|++..+...+++...+..+..++...|++++|.+.|+...+ +.|+ ...|..+..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK---KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH---hCcchHHHHHHHHH
Confidence 344444444444555555555555544432223444444444445555555555555554442 2333 334444455
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CcchHHHHHHHHH
Q 044131 558 ILGRAGQLEKALEFIKGL-AVEP-GP-------AVWGALLGACMIHKDTNLARVASEKLFELDPE--NVGYHVLLSNIYS 626 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m-~~~p-~~-------~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~y~ 626 (784)
.|.+.|++++|.+.+++. ...| +. .+|..+...+...|+++.|...++++++++|+ ++..+..++.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 555555555555554443 1122 22 23444445555555555555555555555555 5555555555555
Q ss_pred hcCCh
Q 044131 627 AERDY 631 (784)
Q Consensus 627 ~~g~~ 631 (784)
..|+.
T Consensus 165 ~~~~~ 169 (228)
T 4i17_A 165 NNGAD 169 (228)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 77
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.13 E-value=1.7e-09 Score=106.74 Aligned_cols=206 Identities=9% Similarity=0.043 Sum_probs=139.8
Q ss_pred CCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHH
Q 044131 410 PNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMIS 486 (784)
Q Consensus 410 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~ 486 (784)
.|+..+......+...|++++|...+..+++..-+++...+..+...|.+.|++++|...|++.. ..+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 35566777777777888888888888888776633566666667778888888888888887765 234557777778
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC---cchHHHH
Q 044131 487 GYGLHGHGLEALQLFSEMLHSGIRPS-G-------VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL---AEHYACM 555 (784)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g~~pd-~-------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 555 (784)
.|...|++++|+..|++..+. .|+ . ..|..+...+...|++++|.+.|+... .+.|+ ...|..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al---~~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHAT---DVTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHH---hcCCCcccHHHHHHH
Confidence 888888888888888887774 343 3 346666667777788888888888776 34554 4556666
Q ss_pred HHHHHhcCCH--HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 556 VDILGRAGQL--EKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 556 v~~l~r~g~~--~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
..+|...|+. ++|..+. ..+...+..+. ....++++.|...++++++++|+++.....|+.+...
T Consensus 160 ~~~~~~~~~~~~~~a~~~~-----~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~~ 226 (228)
T 4i17_A 160 GVLFYNNGADVLRKATPLA-----SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKAM 226 (228)
T ss_dssp HHHHHHHHHHHHHHHGGGT-----TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcc-----cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHh
Confidence 6666555443 2222111 22233333332 2345567999999999999999999888888777543
No 78
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.12 E-value=9.7e-10 Score=121.47 Aligned_cols=177 Identities=12% Similarity=0.012 Sum_probs=155.2
Q ss_pred HHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 044131 463 IVEARELFDLMS---HKSEVTWNTMISGYGLHGHG-LEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQS 538 (784)
Q Consensus 463 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 538 (784)
+++|...++... ..+...|..+...|...|++ ++|++.|++..+.. +-+...+..+..++...|++++|.+.|+.
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 556666665543 34788999999999999999 99999999999853 33477899999999999999999999999
Q ss_pred hHHhcCCCCCcchHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--------CCHHH
Q 044131 539 MIHDHGFKPLAEHYACMVDILGRA---------GQLEKALEFIKGL-AVEP-GPAVWGALLGACMIH--------KDTNL 599 (784)
Q Consensus 539 m~~~~~~~p~~~~~~~lv~~l~r~---------g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~--------g~~~~ 599 (784)
.. .+.|+...+..+..+|.+. |++++|.+.+++. ...| +...|..+..++... |++++
T Consensus 163 al---~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 163 AL---THCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HH---TTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HH---hhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 87 5578888899999999999 9999999999886 3445 577999999999988 99999
Q ss_pred HHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 600 ARVASEKLFELDP---ENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 600 a~~~~~~~~~l~p---~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|...++++++++| +++..|..++.+|...|++++|.+.++...+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 286 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAA 286 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999 9999999999999999999999999988765
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.11 E-value=2.4e-09 Score=100.98 Aligned_cols=171 Identities=16% Similarity=-0.002 Sum_probs=131.7
Q ss_pred HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHH
Q 044131 412 PVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGY 488 (784)
Q Consensus 412 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~ 488 (784)
...+..+...+...|+++.|...+..+.+.. +.+..++..+...|...|++++|...|+++. ..+...|..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456667778889999999999999887654 4567888999999999999999999999875 35678899999999
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 044131 489 GLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKA 568 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA 568 (784)
...|++++|++.|+++.+.. +.+...+..+...+...|++++|.++|+...+. .
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~---------------------- 140 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL---R---------------------- 140 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---C----------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc---C----------------------
Confidence 99999999999999988752 345566666667777777777777777766532 1
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 569 LEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 569 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
+.+..+|..+...+...|+.+.|...++++++++|+++...
T Consensus 141 ---------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 141 ---------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181 (186)
T ss_dssp ---------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGGG
T ss_pred ---------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhhH
Confidence 22345666777777777788888888888887777765443
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.11 E-value=3.8e-08 Score=104.93 Aligned_cols=259 Identities=12% Similarity=0.005 Sum_probs=163.5
Q ss_pred HHHHhCCChhHHHHHHHHHHhCCCCCCHH----HHHHHHHHHhhhCchHHHHHHHHHHHHc----CCCC-chhhHhHHHH
Q 044131 385 AGYTQNGLTEEAISLFQEMQASKVAPNPV----TVSSILSACAQLGAISLGKWVHELVKSR----NFES-NIYVSTALID 455 (784)
Q Consensus 385 ~~~~~~g~~~~A~~l~~~m~~~g~~pd~~----t~~~ll~a~~~~~~~~~a~~i~~~~~~~----g~~~-~~~~~~~Li~ 455 (784)
..+...|++++|...+++........+.. .+..+...+...|+++.|...+....+. +... .......+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445666666666666655543222221 2333444555666666666666665532 1000 1223455666
Q ss_pred HHHhcCCHHHHHHHHhhcCC----------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C--CHHHHHHHH
Q 044131 456 MYAKCGNIVEARELFDLMSH----------K-SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIR--P--SGVTFLSVL 520 (784)
Q Consensus 456 ~y~k~g~~~~A~~~f~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--d~~t~~~ll 520 (784)
.|...|++++|...|++... + ....+..+...|...|++++|...+++..+.... | ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 77778888888777765531 1 1235566777788888888888888887763221 1 124566777
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCCcchHH-----HHHHHHHhcCCHHHHHHHHHhCC-CCCC-----HHHHHHHHH
Q 044131 521 YACSHAGLVREGDEIFQSMIHDHGFKPLAEHYA-----CMVDILGRAGQLEKALEFIKGLA-VEPG-----PAVWGALLG 589 (784)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~lv~~l~r~g~~~eA~~~~~~m~-~~p~-----~~~~~~ll~ 589 (784)
..+...|++++|..+++.......-......+. ..+..+...|++++|...+++.. ..|. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 778888899999888888764322111111222 23344778899999999988763 2221 335677778
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCC------cchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 590 ACMIHKDTNLARVASEKLFELDPEN------VGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 590 a~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++...|+.+.|...++++++..+.. ...+..++.+|...|++++|...++....
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888999999999998887654321 23677889999999999999988876543
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.05 E-value=1e-08 Score=109.74 Aligned_cols=221 Identities=13% Similarity=0.006 Sum_probs=143.9
Q ss_pred HHhhhCchHHHHHHHHHHHHcC--CC---CchhhHhHHHHHHHhcCCHHHHHHHHhhcCC-----C-----CHHHHHHHH
Q 044131 421 ACAQLGAISLGKWVHELVKSRN--FE---SNIYVSTALIDMYAKCGNIVEARELFDLMSH-----K-----SEVTWNTMI 485 (784)
Q Consensus 421 a~~~~~~~~~a~~i~~~~~~~g--~~---~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~-----~~~~~~~li 485 (784)
.+...|+++.|...+..+.+.. .. ....++..+...|...|+++.|...+++..+ + ...+++.+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 3456677777777777776431 11 1244566777778888887777777665431 1 134677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcC--CCCC-cchHHHHHH
Q 044131 486 SGYGLHGHGLEALQLFSEMLHS----GIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHG--FKPL-AEHYACMVD 557 (784)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~--~~p~-~~~~~~lv~ 557 (784)
..|...|++++|++.|++..+. +-.+ ...++..+...+...|++++|.++|++..+... ..|. ...+..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 8888888888888888877652 1111 123566777788888888888888887764111 1222 556777788
Q ss_pred HHHhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 558 ILGRAGQLEKALEFIKGL----AV--EPG-PAVWGALLGACMIHKD---TNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m----~~--~p~-~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
.+.+.|++++|.+.+++. +- .|. ...+..+...+...++ ++.|...+++. ...|+....+..++.+|..
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~ 348 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES 348 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence 888888888888888764 11 222 2245555556666777 66666666652 2334445567788999999
Q ss_pred cCChHHHHHHHHHHH
Q 044131 628 ERDYLQAATVRQVVK 642 (784)
Q Consensus 628 ~g~~~~a~~~~~~m~ 642 (784)
.|++++|.+.++...
T Consensus 349 ~g~~~~A~~~~~~al 363 (378)
T 3q15_A 349 SCHFEQAAAFYRKVL 363 (378)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 999999888877653
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.01 E-value=5.8e-08 Score=103.83 Aligned_cols=227 Identities=8% Similarity=0.031 Sum_probs=169.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhhhCchHHHHHHHHHHHHcC--C---C-CchhhHh
Q 044131 383 MIAGYTQNGLTEEAISLFQEMQASKV-APN----PVTVSSILSACAQLGAISLGKWVHELVKSRN--F---E-SNIYVST 451 (784)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~-~pd----~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g--~---~-~~~~~~~ 451 (784)
....+...|++++|+..|++....-. .+| ..++..+...+...|+++.|...+..+.+.. . . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34456678888888888888765321 122 3456667777888888888888887776431 1 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC-----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 044131 452 ALIDMYAKCGNIVEARELFDLMSH-----KS----EVTWNTMISGYGLHGHGLEALQLFSEMLH-----SGIRPSGVTFL 517 (784)
Q Consensus 452 ~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~pd~~t~~ 517 (784)
.+...|...|++++|...|++..+ ++ ..+++.+...|...|++++|++.|++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 888899999999999988877642 22 34788888999999999999999999887 32 23356788
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCC---cchHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCHH-HHHHHHHH
Q 044131 518 SVLYACSHAGLVREGDEIFQSMIHDHGFKPL---AEHYACMVDILGRAGQ---LEKALEFIKGLAVEPGPA-VWGALLGA 590 (784)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~lv~~l~r~g~---~~eA~~~~~~m~~~p~~~-~~~~ll~a 590 (784)
.+...+...|+.++|..++++..+...-.++ ...+..+...+...|+ +++|..++++....|+.. .+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8889999999999999999998765433222 3456667777888888 999999999876555433 66778889
Q ss_pred HHhcCCHHHHHHHHHHHhcC
Q 044131 591 CMIHKDTNLARVASEKLFEL 610 (784)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~l 610 (784)
+...|+.+.|...+++++++
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999988764
No 83
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.94 E-value=3.1e-09 Score=122.31 Aligned_cols=163 Identities=17% Similarity=0.195 Sum_probs=134.2
Q ss_pred CchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 044131 445 SNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS-GVTFLSVL 520 (784)
Q Consensus 445 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll 520 (784)
.+...++.|...|.+.|++++|.+.|++.. ..+..+|+.+..+|.+.|++++|++.|++.++. .|+ ...|..+.
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg 84 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 346678888888888888888888888765 245778888999999999999999999988884 554 56788888
Q ss_pred HHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 044131 521 YACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDT 597 (784)
Q Consensus 521 ~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~ 597 (784)
.++...|++++|.+.|++.++ +.|+ ...|..+..+|.+.|++++|++.+++. .+.|+ ...|..|..++...|++
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~---l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQ---INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccH
Confidence 899999999999999998874 3565 678888999999999999999998876 35664 66889999999999999
Q ss_pred HHHHHHHHHHhcCCC
Q 044131 598 NLARVASEKLFELDP 612 (784)
Q Consensus 598 ~~a~~~~~~~~~l~p 612 (784)
+.|++.+++++++.|
T Consensus 162 ~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 162 TDYDERMKKLVSIVA 176 (723)
T ss_dssp TTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCh
Confidence 999999998887654
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.93 E-value=2.8e-08 Score=102.15 Aligned_cols=220 Identities=12% Similarity=-0.020 Sum_probs=123.3
Q ss_pred CHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHhhhCchHHHHHHH
Q 044131 361 EMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQAS----KVAPN-PVTVSSILSACAQLGAISLGKWVH 435 (784)
Q Consensus 361 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~pd-~~t~~~ll~a~~~~~~~~~a~~i~ 435 (784)
++++|...|+.. ...|...|++++|++.|.+.... |-.++ ..++..+..++...|++++|...+
T Consensus 32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 366666665543 55666677777777777665432 11111 223444444444444444444444
Q ss_pred HHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCC-CC-
Q 044131 436 ELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLH-GHGLEALQLFSEMLHSGIR-PS- 512 (784)
Q Consensus 436 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~-pd- 512 (784)
..+++. +...|+...+ ..+|+.+...|... |++++|+..|++..+.... .+
T Consensus 101 ~~Al~l---------------~~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~ 154 (292)
T 1qqe_A 101 ENAIQI---------------FTHRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV 154 (292)
T ss_dssp HHHHHH---------------HHHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHH---------------HHHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh
Confidence 433321 1111111111 23566777777775 8888888888877652100 01
Q ss_pred ---HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCc-----chHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHH-
Q 044131 513 ---GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLA-----EHYACMVDILGRAGQLEKALEFIKGL-AVEPGPA- 582 (784)
Q Consensus 513 ---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~-----~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~- 582 (784)
..++..+...+...|++++|..+|+...+...-.+.. ..|..+..++...|++++|...+++. .+.|+..
T Consensus 155 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 234 (292)
T 1qqe_A 155 ALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD 234 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 2456777778888888888888888776432111111 14566777777888888888888775 3444322
Q ss_pred -----HHHHHHHHHH--hcCCHHHHHHHHHHHhcCCCCCcch
Q 044131 583 -----VWGALLGACM--IHKDTNLARVASEKLFELDPENVGY 617 (784)
Q Consensus 583 -----~~~~ll~a~~--~~g~~~~a~~~~~~~~~l~p~~~~~ 617 (784)
.+..|+.++. ..++++.|...++++.+++|.+...
T Consensus 235 ~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 235 SRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp ---HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 3444555554 3466788888888888887765433
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.92 E-value=5.3e-09 Score=106.23 Aligned_cols=164 Identities=15% Similarity=0.128 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhc-----CCCC
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHS------GIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDH-----GFKP 547 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~-----~~~p 547 (784)
+|..+...|...|++++|++.|++..+. .-.| ...++..+...+...|++++|.++|++..+.. +-.|
T Consensus 87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 166 (283)
T 3edt_B 87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDP 166 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3444444444444444444444444432 0011 12334444445555555555555555544320 0011
Q ss_pred C-cchHHHHHHHHHhcCCHHHHHHHHHhCC----------CCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHhc
Q 044131 548 L-AEHYACMVDILGRAGQLEKALEFIKGLA----------VEPG-PAVWGALLGACMIHKD------TNLARVASEKLFE 609 (784)
Q Consensus 548 ~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~----------~~p~-~~~~~~ll~a~~~~g~------~~~a~~~~~~~~~ 609 (784)
. ...+..+..+|.+.|++++|.+++++.- ..|. ...|..+.......+. +..+...++.+..
T Consensus 167 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (283)
T 3edt_B 167 NVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV 246 (283)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC
Confidence 1 3344455555555555555555554330 1111 1133333333322222 2223333333333
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 610 LDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 610 l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..|..+..+..|+.+|...|++++|.+.++...+
T Consensus 247 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4455556777788888888888888877766543
No 86
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.91 E-value=4.3e-08 Score=98.80 Aligned_cols=204 Identities=14% Similarity=0.027 Sum_probs=131.9
Q ss_pred chhhHhHHHHHHHhcCCHHHHHHHHhhcCC--C-C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHHHH
Q 044131 446 NIYVSTALIDMYAKCGNIVEARELFDLMSH--K-S---EVTWNTMISGYGLHGHGLEALQLFSEMLHSGI-RPS-GVTFL 517 (784)
Q Consensus 446 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd-~~t~~ 517 (784)
+...+-.+...+.+.|++++|...|+.+.+ | + ...|..+..+|.+.|++++|+..|++..+... .|+ ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 344555566667777777777777776652 2 2 45666677777777777777777777776421 112 23455
Q ss_pred HHHHHHHc--------cCCHHHHHHHHHHhHHhcCCCCCc-chHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 044131 518 SVLYACSH--------AGLVREGDEIFQSMIHDHGFKPLA-EHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALL 588 (784)
Q Consensus 518 ~ll~a~~~--------~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll 588 (784)
.+..++.. .|++++|...|+..++.+ |+. .....+..+....+.+ ...+..+.
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la 155 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDATQKIRELRAKL---------------ARKQYEAA 155 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence 55556666 677777777777766542 332 1221111111000000 11246677
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCccCCcccEE
Q 044131 589 GACMIHKDTNLARVASEKLFELDPENV---GYHVLLSNIYSAE----------RDYLQAATVRQVVKKRKLAKAPGCTLI 655 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~----------g~~~~a~~~~~~m~~~~~~k~~g~s~i 655 (784)
..+...|+++.|...++++++..|+++ ..+..++.+|... |++++|...++...+..
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~---------- 225 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF---------- 225 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----------
T ss_pred HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----------
Confidence 889999999999999999999999854 4788999999977 99999999998876522
Q ss_pred EECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 044131 656 EVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMRE 690 (784)
Q Consensus 656 ~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 690 (784)
..+|...+....+.++...+.+
T Consensus 226 -------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 -------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp -------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred -------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2356666777777777666654
No 87
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.90 E-value=4.4e-07 Score=96.58 Aligned_cols=192 Identities=9% Similarity=0.005 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCC-------C----ChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCC--C--CHH
Q 044131 349 LTALSTVYSRLNEMEAARKLFDESSE-------K----SLASWNAMIAGYTQNGLTEEAISLFQEMQASKVA--P--NPV 413 (784)
Q Consensus 349 ~~~Li~~y~~~g~~~~A~~~f~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--d~~ 413 (784)
...+...|...|++++|...+++... + ....+..+...|...|++++|...+++....... + ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 34455556666666666666554321 1 1124445555666667777776666665542211 1 123
Q ss_pred HHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCc-hhhHh-----HHHHHHHhcCCHHHHHHHHhhcCCCC-------HHH
Q 044131 414 TVSSILSACAQLGAISLGKWVHELVKSRNFESN-IYVST-----ALIDMYAKCGNIVEARELFDLMSHKS-------EVT 480 (784)
Q Consensus 414 t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~-~~~~~-----~Li~~y~k~g~~~~A~~~f~~~~~~~-------~~~ 480 (784)
++..+...+...|++++|...++...+..-.++ ...+. .++..+...|++++|...++....++ ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 444555555666666666666666554311111 01111 22334556666666666666654321 123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 481 WNTMISGYGLHGHGLEALQLFSEMLHS----GIRPSGV-TFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 481 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~pd~~-t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
+..+...+...|++++|...+++.... |..++.. ++..+..++...|+.++|...++...
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 445555566666666666666655431 1111121 33334444555555555555555543
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.88 E-value=2.7e-08 Score=102.25 Aligned_cols=186 Identities=9% Similarity=-0.019 Sum_probs=128.1
Q ss_pred HHHhcCCHHHHHHHHhhcCC-------C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHH
Q 044131 456 MYAKCGNIVEARELFDLMSH-------K--SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGI---RPS--GVTFLSVLY 521 (784)
Q Consensus 456 ~y~k~g~~~~A~~~f~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~pd--~~t~~~ll~ 521 (784)
.|...|++++|...|.+... + ...+|+.+...|...|++++|+..|++..+... .+. ..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45566666666666654431 1 134777888888888888888888887765211 111 346788888
Q ss_pred HHHcc-CCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC---H-----HHHHHH
Q 044131 522 ACSHA-GLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALEFIKGLA-VEPG---P-----AVWGAL 587 (784)
Q Consensus 522 a~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~---~-----~~~~~l 587 (784)
.+... |++++|..+|++..+.+.-..+ ...+..+...|.+.|++++|.+.+++.. ..|+ . ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 99996 9999999999998754211111 3568889999999999999999998762 2332 1 157777
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCcch-----HHHHHHHHH--hcCChHHHHHHHHHH
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPENVGY-----HVLLSNIYS--AERDYLQAATVRQVV 641 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~-----~~~l~~~y~--~~g~~~~a~~~~~~m 641 (784)
..++...|+++.|...++++++++|+.+.. +..|...|. ..+++++|.+.++.+
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 888899999999999999999999986653 334555664 467788888877543
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.88 E-value=4.9e-07 Score=91.42 Aligned_cols=173 Identities=10% Similarity=0.008 Sum_probs=106.9
Q ss_pred HHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 044131 466 ARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIH 541 (784)
Q Consensus 466 A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 541 (784)
|...|++.. .++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.++.|.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 455555443 2444555566666777777777777777765544322 334455566677777777777777777753
Q ss_pred hcCCCC-----CcchHHHHHHH--HHh--cCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC-
Q 044131 542 DHGFKP-----LAEHYACMVDI--LGR--AGQLEKALEFIKGLA-VEPGPAVWGALLGACMIHKDTNLARVASEKLFEL- 610 (784)
Q Consensus 542 ~~~~~p-----~~~~~~~lv~~--l~r--~g~~~eA~~~~~~m~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l- 610 (784)
. .| +..+...+..+ ... .++.++|..+|+++. ..|+...-..|+.++...|++++|+..++.+.++
T Consensus 165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~ 241 (310)
T 3mv2_B 165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY 241 (310)
T ss_dssp H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2 44 23333333333 222 337777777777763 3344223333444667778888888888877765
Q ss_pred ---------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 611 ---------DPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 611 ---------~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+|+++.++..++.++...|+ +|.+++..+++
T Consensus 242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 47777777777777777776 77777777776
No 90
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.82 E-value=9.6e-08 Score=96.75 Aligned_cols=164 Identities=11% Similarity=0.042 Sum_probs=99.6
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCC----------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CC
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSH----------K-SEVTWNTMISGYGLHGHGLEALQLFSEMLHS------GI 509 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~ 509 (784)
..++..+...|...|++++|...|++... | ...+|..+...|...|++++|+..|+++.+. +-
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 164 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPD 164 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555566666666666666666655431 1 2346777777777888888888888777763 11
Q ss_pred CCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhc------CCCCC-cchHHHHHHHHHhcC------CHHHHHHHHHhC
Q 044131 510 RPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDH------GFKPL-AEHYACMVDILGRAG------QLEKALEFIKGL 575 (784)
Q Consensus 510 ~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~------~~~p~-~~~~~~lv~~l~r~g------~~~eA~~~~~~m 575 (784)
.|+ ..++..+...+...|++++|.++|+...+.. ...|. ...|..+...+...+ .+.++...++..
T Consensus 165 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (283)
T 3edt_B 165 DPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC 244 (283)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence 332 3467777788888888888888888876431 12233 333444443333322 345555555555
Q ss_pred C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 044131 576 A-VEPG-PAVWGALLGACMIHKDTNLARVASEKLFEL 610 (784)
Q Consensus 576 ~-~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l 610 (784)
. ..|+ ..+|..|..++...|+++.|...+++++++
T Consensus 245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 2233 447888999999999999999999998875
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.81 E-value=3e-08 Score=114.69 Aligned_cols=168 Identities=10% Similarity=-0.065 Sum_probs=91.3
Q ss_pred HhcCCHHHHHHHHhhcC-----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044131 458 AKCGNIVEARELFDLMS-----------HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHA 526 (784)
Q Consensus 458 ~k~g~~~~A~~~f~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 526 (784)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 34455555555555443 2334455555555666666666666666655531 22334555555556666
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 044131 527 GLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVA 603 (784)
Q Consensus 527 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~ 603 (784)
|++++|.+.|++..+. .|+ ...|..+..+|.+.|++++ ++.+++. ...| +...|..+..++...|++++|...
T Consensus 481 g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6666666666655532 343 4455556666666666666 5555554 2333 344566666666666666666666
Q ss_pred HHHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 604 SEKLFELDPENVGYHVLLSNIYSAERD 630 (784)
Q Consensus 604 ~~~~~~l~p~~~~~~~~l~~~y~~~g~ 630 (784)
++++++++|+++..+..++.+|...|+
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCC
Confidence 666666666666666666666655443
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.81 E-value=2.9e-09 Score=97.33 Aligned_cols=137 Identities=9% Similarity=-0.033 Sum_probs=91.8
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHH
Q 044131 489 GLHGHGLEALQLFSEMLHSGIRPS-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLE 566 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~ 566 (784)
...|+.++|++.+++.... .|+ ...+..+...|...|++++|.+.|++.++. .|+ ...|..+..+|.+.|+++
T Consensus 8 ~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCchH
Confidence 3445555666655555432 222 223445555666666666666666666532 343 556666677777777777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 567 KALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARV-ASEKLFELDPENVGYHVLLSNIYSAERD 630 (784)
Q Consensus 567 eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~-~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 630 (784)
+|...+++. .+.| ++.+|..+...+...|+.++|.. .++++++++|+++..|.+.+.++...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777664 3455 46688888888888898876555 4689999999999999999999988875
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.80 E-value=1.2e-07 Score=83.71 Aligned_cols=128 Identities=23% Similarity=0.262 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDIL 559 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l 559 (784)
.|..+...|...|++++|+.+|+++.+.. +.+..++..+...+...|++++|..+|+.+.+. .|
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~------------ 66 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL---DP------------ 66 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CT------------
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH---CC------------
Confidence 45566666666777777777777766542 234445555555666666666666666665432 12
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 560 GRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 560 ~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
.+...|..+...+...|+++.|...++++++..|+++..+..++.+|...|++++|.+.++
T Consensus 67 -------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~ 127 (136)
T 2fo7_A 67 -------------------RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQ 127 (136)
T ss_dssp -------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred -------------------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHH
Confidence 1233444444455555555555555555555555555555555555555555555555555
Q ss_pred HHH
Q 044131 640 VVK 642 (784)
Q Consensus 640 ~m~ 642 (784)
.+.
T Consensus 128 ~~~ 130 (136)
T 2fo7_A 128 KAL 130 (136)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.79 E-value=1.4e-07 Score=95.02 Aligned_cols=203 Identities=11% Similarity=0.038 Sum_probs=144.7
Q ss_pred CCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCc---hhhHhHHHHHHHhcCCHHHHHHHHhhcCC--C---C-HHH
Q 044131 410 PNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESN---IYVSTALIDMYAKCGNIVEARELFDLMSH--K---S-EVT 480 (784)
Q Consensus 410 pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~---~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~---~-~~~ 480 (784)
.+...+......+...|++++|...+..+++.. +.+ ...+..+...|.+.|++++|...|++..+ | . ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356677777788889999999999999999864 333 56778889999999999999999998762 2 2 457
Q ss_pred HHHHHHHHHH--------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchH
Q 044131 481 WNTMISGYGL--------HGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHY 552 (784)
Q Consensus 481 ~~~li~~~~~--------~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 552 (784)
|..+..+|.. .|++++|+..|++..+. .|+.... ..+...+..+... -...+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~-------------~~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELV-------------DDATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTH-------------HHHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhH-------------HHHHHHHHHHHHH-----HHHHH
Confidence 7788888888 99999999999999984 4543211 1111111111110 01224
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHhcCCCCCcc-
Q 044131 553 ACMVDILGRAGQLEKALEFIKGLA-VEPG----PAVWGALLGACMIH----------KDTNLARVASEKLFELDPENVG- 616 (784)
Q Consensus 553 ~~lv~~l~r~g~~~eA~~~~~~m~-~~p~----~~~~~~ll~a~~~~----------g~~~~a~~~~~~~~~l~p~~~~- 616 (784)
..+...|.+.|++++|...+++.- ..|+ ...|..+..++... |+++.|...++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 567778888888888888887751 2232 34677777777755 8899999999999999999864
Q ss_pred --hHHHHHHHHHhcCChHH
Q 044131 617 --YHVLLSNIYSAERDYLQ 633 (784)
Q Consensus 617 --~~~~l~~~y~~~g~~~~ 633 (784)
.+..+..++...|++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 44556666655555444
No 95
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.79 E-value=8.5e-08 Score=98.16 Aligned_cols=173 Identities=11% Similarity=-0.040 Sum_probs=136.0
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 044131 463 IVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIH 541 (784)
Q Consensus 463 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 541 (784)
.+.....+......+...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|+.++|...++.+..
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~ 179 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPL 179 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCch
Confidence 334445555555455667777888888999999999999999884 45 456778888899999999999999998864
Q ss_pred hcCCCCCcchHHHH-HHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC--cc
Q 044131 542 DHGFKPLAEHYACM-VDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPEN--VG 616 (784)
Q Consensus 542 ~~~~~p~~~~~~~l-v~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~--~~ 616 (784)
..|+....... .-.+.+.|+.++|.+.+++. ...| +...+..|..++...|+.+.|...++++++.+|++ +.
T Consensus 180 ---~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~ 256 (287)
T 3qou_A 180 ---QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ 256 (287)
T ss_dssp ---GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred ---hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence 35654333222 23366778888888888775 2345 57799999999999999999999999999999998 88
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHH
Q 044131 617 YHVLLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 617 ~~~~l~~~y~~~g~~~~a~~~~~~ 640 (784)
.+..|+.+|...|+.++|...++.
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~ 280 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRR 280 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHH
Confidence 999999999999999998877654
No 96
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.78 E-value=2.6e-07 Score=90.74 Aligned_cols=180 Identities=12% Similarity=0.024 Sum_probs=114.7
Q ss_pred hhHhHHHHHHHhcCCHHHHHHHHhhcCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH----HHH
Q 044131 448 YVSTALIDMYAKCGNIVEARELFDLMSH--KS----EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGV----TFL 517 (784)
Q Consensus 448 ~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~----t~~ 517 (784)
..+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++..+. .|+.. .+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence 3444556667777888888888877652 32 246677777777888888888888887764 33321 233
Q ss_pred HHHHHHHc------------------cCCHHHHHHHHHHhHHhcCCCCCcc-hHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 044131 518 SVLYACSH------------------AGLVREGDEIFQSMIHDHGFKPLAE-HYACMVDILGRAGQLEKALEFIKGLAVE 578 (784)
Q Consensus 518 ~ll~a~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~~-~~~~lv~~l~r~g~~~eA~~~~~~m~~~ 578 (784)
.+..++.. .|+.++|...|+.+++. .|+.. .+.... +.+.+.+..
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~----~l~~~~~~~--------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATK----RLVFLKDRL--------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHH----HHHHHHHHH---------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHH----HHHHHHHHH---------
Confidence 33333332 34556666666665532 23321 111111 000000000
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 044131 579 PGPAVWGALLGACMIHKDTNLARVASEKLFELDPENV---GYHVLLSNIYSAERDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 579 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 647 (784)
......+...+...|+++.|...++++++..|+++ ..+..++.+|...|++++|.+.++.+...+..
T Consensus 147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 00123455677889999999999999999999986 56889999999999999999999998876654
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.75 E-value=1.4e-07 Score=83.22 Aligned_cols=95 Identities=21% Similarity=0.225 Sum_probs=79.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAE 628 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 628 (784)
.|..+...+.+.|++++|.++++++. .+.+..+|..+...+...|+++.|...++++++..|+++..+..++.+|...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45566777778888888888877652 2345678888888999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhCC
Q 044131 629 RDYLQAATVRQVVKKRK 645 (784)
Q Consensus 629 g~~~~a~~~~~~m~~~~ 645 (784)
|++++|.+.++.+.+..
T Consensus 83 ~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELD 99 (136)
T ss_dssp TCHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHhC
Confidence 99999999998876643
No 98
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.72 E-value=2.1e-07 Score=107.62 Aligned_cols=193 Identities=12% Similarity=0.042 Sum_probs=148.8
Q ss_pred hhhCchHHHHHHHHHHH--------HcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHc
Q 044131 423 AQLGAISLGKWVHELVK--------SRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLH 491 (784)
Q Consensus 423 ~~~~~~~~a~~i~~~~~--------~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~ 491 (784)
...|++++|.+.++.+. +. .+.+...+..+...|.+.|++++|...|++.. ..+...|..+..+|.+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 56677777777777776 32 24466778888888999999999999998876 35778999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHH
Q 044131 492 GHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKAL 569 (784)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~ 569 (784)
|++++|++.|++..+. .| +...+..+..++...|++++ .+.|++..+. .|+ ...|..+..+|.+.|++++|.
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST---NDGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh---CCchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999984 45 55678888899999999999 9999998753 565 678889999999999999999
Q ss_pred HHHHhCC-CCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 570 EFIKGLA-VEPG-PAVWGALLGACMIHKD-----TNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 570 ~~~~~m~-~~p~-~~~~~~ll~a~~~~g~-----~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
+.+++.. ..|+ ...|..+..++...++ .+...++.+.+.++.++++..+.+-.
T Consensus 555 ~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~~l~~ 614 (681)
T 2pzi_A 555 RTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVLQIRA 614 (681)
T ss_dssp HHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHHHHHH
T ss_pred HHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 9999984 7786 4578788777766555 45555666666667666666554433
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.71 E-value=1.2e-06 Score=88.68 Aligned_cols=240 Identities=9% Similarity=-0.029 Sum_probs=158.8
Q ss_pred HhcCCHHHHHHHHhhcCCCCh-hHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHH
Q 044131 357 SRLNEMEAARKLFDESSEKSL-ASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVH 435 (784)
Q Consensus 357 ~~~g~~~~A~~~f~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~ 435 (784)
.-.|.+..+..-...+...+. ..---+..+|...|++... ..-.|....+..+. .+...+ +...+
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~----a~~~l 89 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK----NIEEL 89 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT----CCHHH
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc----HHHHH
Confidence 345777777665555543322 2223344677777776632 11233332333222 222222 45566
Q ss_pred HHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 044131 436 ELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH-----KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIR 510 (784)
Q Consensus 436 ~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 510 (784)
+..+..+ .++......+...|...|++++|++++.+... .+...+-.++..|.+.|+.+.|.+.+++|.+ ..
T Consensus 90 ~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~ 166 (310)
T 3mv2_B 90 ENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AI 166 (310)
T ss_dssp HHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HS
T ss_pred HHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cC
Confidence 6665554 34455556788889999999999999988732 3556777888899999999999999999987 46
Q ss_pred C-----CHHHHHHHHHH--HHccC--CHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-C---
Q 044131 511 P-----SGVTFLSVLYA--CSHAG--LVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-V--- 577 (784)
Q Consensus 511 p-----d~~t~~~ll~a--~~~~g--~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~--- 577 (784)
| +..+...+..+ ....| ..++|..+|+++.+. .|+......+..++.+.|++++|++.++.+. .
T Consensus 167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 7 36666666666 33334 899999999998754 3543333344447889999999999987642 1
Q ss_pred -------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 578 -------EP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 578 -------~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
.| |+.+...++......|+ .|.+..+++.+..|++|...
T Consensus 244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 25 45566677766667787 88999999999999987544
No 100
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.70 E-value=4.2e-08 Score=89.48 Aligned_cols=120 Identities=12% Similarity=-0.009 Sum_probs=100.5
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 044131 520 LYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKD 596 (784)
Q Consensus 520 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~ 596 (784)
...+...|++++|.+.++... ...|+ ...+-.+..+|.+.|++++|++.+++. .+.| ++.+|..+..++...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~---~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGST---PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHS---CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhc---ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 344556788999999998775 44554 556677899999999999999999886 3556 57799999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH-HHHH
Q 044131 597 TNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVR-QVVK 642 (784)
Q Consensus 597 ~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~-~~m~ 642 (784)
++.|+..++++++++|+++..+..++.+|...|++++|.+.+ +...
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887754 5443
No 101
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.69 E-value=6.7e-06 Score=90.60 Aligned_cols=369 Identities=12% Similarity=0.025 Sum_probs=210.1
Q ss_pred cCC-CchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-hHH
Q 044131 186 KNC-CFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGE-VER 263 (784)
Q Consensus 186 ~~g-~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~-~~~ 263 (784)
+.| +.+.|..+|+.+... -|+ ++.+.+.++|+..+.. .|++.+|...++.-.+.++ .+.
T Consensus 6 ~~~~~i~~aR~vyer~l~~---~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~ 66 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL---YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFK 66 (493)
T ss_dssp ------CCHHHHHHHHHHH---HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----C
T ss_pred HcCcchHHHHHHHHHHHHH---CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHH
Confidence 345 377888888887753 233 8888999999988874 4688888888887777663 344
Q ss_pred HHHHHhcCC------CCCeeeHHHHHHHHH----hCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHH
Q 044131 264 AELLFRDIV------RPDLISCNAMISGYT----CNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCI 333 (784)
Q Consensus 264 A~~~f~~~~------~~d~~~~~~li~~~~----~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i 333 (784)
...+|+... ..+...|...+.-+. .+|+.+.+.++|++.+.. ++.. +..+-..|
T Consensus 67 i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~--~~~lw~~Y------------ 130 (493)
T 2uy1_A 67 LYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGS--LSELWKDF------------ 130 (493)
T ss_dssp THHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTT--HHHHHHHH------------
T ss_pred HHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhh--HHHHHHHH------------
Confidence 566666542 134556776666443 235677788888888763 2111 11111111
Q ss_pred HHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcC----CCChhHHHHHHHHHHhCCC-------hhHHHHHHHH
Q 044131 334 HSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESS----EKSLASWNAMIAGYTQNGL-------TEEAISLFQE 402 (784)
Q Consensus 334 ~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~----~~~~~~~~~li~~~~~~g~-------~~~A~~l~~~ 402 (784)
....+. .+..+...++.-+. +.+..|+.+++... ..+...|...+.--..++. .+.+..+|++
T Consensus 131 -~~fE~~---~~~~~~~~~~~~~~--~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~ 204 (493)
T 2uy1_A 131 -ENFELE---LNKITGKKIVGDTL--PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY 204 (493)
T ss_dssp -HHHHHH---HCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred -HHHHHH---hccccHHHHHHHHh--HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence 111110 01111111111111 12333333333221 1244467665554322211 2346678888
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHH-HHHHhhcC-------
Q 044131 403 MQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEA-RELFDLMS------- 474 (784)
Q Consensus 403 m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A-~~~f~~~~------- 474 (784)
+... .+-+...+...+.-+...|+.+.|+.+++.+++. +.+...+.. |+.....++. ..+.+...
T Consensus 205 al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~ 277 (493)
T 2uy1_A 205 ILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAESA 277 (493)
T ss_dssp HHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC-------
T ss_pred HHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccchh
Confidence 8764 3445667777777777888999999999999887 444433332 3322111111 11111110
Q ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHhHHhcCCCCC
Q 044131 475 -----HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA-CSHAGLVREGDEIFQSMIHDHGFKPL 548 (784)
Q Consensus 475 -----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a-~~~~g~~~~a~~~~~~m~~~~~~~p~ 548 (784)
......|-..+.-+.+++..+.|..+|++. .. ..++...|...... +...++.+.|..+|+...+.++-.
T Consensus 278 ~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~-- 353 (493)
T 2uy1_A 278 EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS-- 353 (493)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC--
T ss_pred hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC--
Confidence 011245777777776778889999999988 32 12233444322211 122346889999999888765322
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
...+...++...+.|+.+.|..++++.. .....|...+.--..+|+.+.+..++++.+
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3456677888888899999999998873 356688888877777888888877777665
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.65 E-value=1.7e-07 Score=88.09 Aligned_cols=155 Identities=10% Similarity=-0.061 Sum_probs=98.6
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 044131 450 STALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHA 526 (784)
Q Consensus 450 ~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~ 526 (784)
...+...+.+.|++++|...|++..+ .+...|..+...|.+.|++++|+..|++.... .|+.... .+...+
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~-~~~~~~--- 82 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYK-SLIAKL--- 82 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHH-HHHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHH-HHHHHH---
Confidence 34455566666677777666666652 34556666666666666666666666665442 2322211 111000
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 044131 527 GLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVAS 604 (784)
Q Consensus 527 g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~ 604 (784)
. +.+.+...+|...+++. ...| +...|..+..++...|++++|...+
T Consensus 83 ------------------------------~-~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~ 131 (176)
T 2r5s_A 83 ------------------------------E-LHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELL 131 (176)
T ss_dssp ------------------------------H-HHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ------------------------------H-HHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHH
Confidence 0 01111112344444443 2345 4678888899999999999999999
Q ss_pred HHHhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 605 EKLFELDPEN--VGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 605 ~~~~~l~p~~--~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
+++++.+|+. +..+..++.+|...|+.++|...++..
T Consensus 132 ~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 132 WNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQ 170 (176)
T ss_dssp HHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred HHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence 9999999875 558899999999999999998887654
No 103
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.64 E-value=2.1e-07 Score=90.10 Aligned_cols=126 Identities=10% Similarity=0.017 Sum_probs=97.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhc
Q 044131 484 MISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRA 562 (784)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~ 562 (784)
+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|++.++. .|+ ...|..+...|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHH
Confidence 8888999999999999999998853 335667888889999999999999999998853 565 67888888888766
Q ss_pred CC--HHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 563 GQ--LEKALEFIKGLAVEPGPA--VWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 563 g~--~~eA~~~~~~m~~~p~~~--~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
|. .+++...++... .|++. .|..+..++...|++++|+..+++++++.|++
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 54 455666666653 44443 45556667777899999999999999999974
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.63 E-value=2.5e-07 Score=104.81 Aligned_cols=159 Identities=13% Similarity=-0.009 Sum_probs=125.5
Q ss_pred cCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 044131 460 CGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIF 536 (784)
Q Consensus 460 ~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~ 536 (784)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|++.|++..+.. +.+...+..+..++...|++++|.++|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998763 457899999999999999999999999999853 335678888999999999999999999
Q ss_pred HHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHhcC
Q 044131 537 QSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIH---KDTNLARVASEKLFEL 610 (784)
Q Consensus 537 ~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~---g~~~~a~~~~~~~~~l 610 (784)
++..+. .|+ ...+..+..+|.+.|++++|.+.+++. ...| +...|..+..++... |+.++|...++++++.
T Consensus 81 ~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999854 454 678899999999999999999999886 3444 567899999999999 9999999999999999
Q ss_pred CCCCcchHHHHH
Q 044131 611 DPENVGYHVLLS 622 (784)
Q Consensus 611 ~p~~~~~~~~l~ 622 (784)
+|++...+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 999999888876
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.63 E-value=1.7e-06 Score=84.00 Aligned_cols=171 Identities=8% Similarity=-0.042 Sum_probs=125.0
Q ss_pred HHHHHhhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----CHHHHHHHHHHhH
Q 044131 466 ARELFDLMS-HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAG----LVREGDEIFQSMI 540 (784)
Q Consensus 466 A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g----~~~~a~~~~~~m~ 540 (784)
|.+.|++.. ..+..++..+...|...+++++|++.|++..+.| +...+..+...+.. | +.++|.++|+...
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 333443333 3456667777777777778888888888777765 45555566666666 5 7888888888775
Q ss_pred HhcCCCCCcchHHHHHHHHHh----cCCHHHHHHHHHhCC-CCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHh
Q 044131 541 HDHGFKPLAEHYACMVDILGR----AGQLEKALEFIKGLA-VEPG---PAVWGALLGACMI----HKDTNLARVASEKLF 608 (784)
Q Consensus 541 ~~~~~~p~~~~~~~lv~~l~r----~g~~~eA~~~~~~m~-~~p~---~~~~~~ll~a~~~----~g~~~~a~~~~~~~~ 608 (784)
+. -+...+..|..+|.. .+++++|.+++++.- ..|. +..+..|...+.. .+|.++|...++++.
T Consensus 81 ~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 42 245566677777766 778888988888764 4443 6788888888887 789999999999999
Q ss_pred cCCCCCcchHHHHHHHHHhc-C-----ChHHHHHHHHHHHhCC
Q 044131 609 ELDPENVGYHVLLSNIYSAE-R-----DYLQAATVRQVVKKRK 645 (784)
Q Consensus 609 ~l~p~~~~~~~~l~~~y~~~-g-----~~~~a~~~~~~m~~~~ 645 (784)
++ |.++..+..|+.+|... | ++++|.+.++...+.|
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88 67778899999999764 3 8999999998877655
No 106
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.61 E-value=1.7e-05 Score=87.36 Aligned_cols=202 Identities=12% Similarity=0.030 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHH-HHHHhhc
Q 044131 294 SSLRLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAA-RKLFDES 372 (784)
Q Consensus 294 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A-~~~f~~~ 372 (784)
.+..+|++++... +.+...|...+.-+...|+++.|..++...++. +.+..++.. |+.....++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHH
Confidence 3456666666542 333445555555556667777777777777766 334333332 2221111111 1111111
Q ss_pred C------------CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh-hCchHHHHHHHHHHH
Q 044131 373 S------------EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQ-LGAISLGKWVHELVK 439 (784)
Q Consensus 373 ~------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~-~~~~~~a~~i~~~~~ 439 (784)
. ......|-..+....+.+..+.|..+|.+. .. ...+...|......-.. .++.+.|+.+++...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 0 001234666666666667788888888877 22 11233333321111112 235788888888877
Q ss_pred HcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 440 SRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 440 ~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
+.- +.++..+...++...+.|+.+.|+.+|+.+. +....|...+.--..+|+.+.+..+++++.+
T Consensus 348 ~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 348 LKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 753 3344555667777778888888888888874 3566777777766677777777777776654
No 107
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.61 E-value=1.6e-07 Score=85.38 Aligned_cols=100 Identities=13% Similarity=0.015 Sum_probs=88.0
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHH
Q 044131 544 GFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVL 620 (784)
Q Consensus 544 ~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 620 (784)
.+.|+ ...+..+...+.+.|++++|.+.|++.- ..| ++..|..+..++...|++++|...++++++++|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45565 5677778888889999999999988763 455 57799999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 044131 621 LSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 621 l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++.+|...|++++|.+.++...+
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999988765
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.61 E-value=3.5e-07 Score=103.59 Aligned_cols=146 Identities=10% Similarity=-0.068 Sum_probs=93.1
Q ss_pred hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 044131 425 LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLF 501 (784)
Q Consensus 425 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~ 501 (784)
.|++++|.+.++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|++.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 356777777777776653 34566777777888888888888888877652 35667777888888888888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhc---CCHHHHHHHHHhC
Q 044131 502 SEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRA---GQLEKALEFIKGL 575 (784)
Q Consensus 502 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~---g~~~eA~~~~~~m 575 (784)
++..+.. +.+...+..+..++...|++++|.+.|++..+. .|+ ...+..+..++... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL---LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 8877742 234566777777888888888888888877643 343 56677777777777 8888888877765
No 109
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.60 E-value=2.8e-07 Score=81.06 Aligned_cols=93 Identities=10% Similarity=0.043 Sum_probs=53.5
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 550 EHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 550 ~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
+.+......|.+.|++++|++.|++. ...| ++.+|..+..++...|+++.|...++++++++|+++..|..++.+|..
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 34444555555555555555555543 2233 344555666666666666666666666666666666666666666666
Q ss_pred cCChHHHHHHHHHHH
Q 044131 628 ERDYLQAATVRQVVK 642 (784)
Q Consensus 628 ~g~~~~a~~~~~~m~ 642 (784)
.|++++|.+.++...
T Consensus 94 ~~~~~~A~~~~~~al 108 (126)
T 4gco_A 94 MREWSKAQRAYEDAL 108 (126)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 666666666655544
No 110
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.59 E-value=1.6e-07 Score=85.40 Aligned_cols=100 Identities=10% Similarity=0.021 Sum_probs=85.7
Q ss_pred CCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHH
Q 044131 544 GFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVL 620 (784)
Q Consensus 544 ~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 620 (784)
.+.|+ ...+..+...+.+.|++++|...+++.- ..| ++..|..+..++...|+++.|...++++++++|+++..+..
T Consensus 15 ~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 15 EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 44554 5566777888888999999998888762 344 67799999999999999999999999999999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 044131 621 LSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 621 l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++.+|...|++++|.+.++...+
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999887654
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.56 E-value=2.1e-06 Score=88.60 Aligned_cols=220 Identities=11% Similarity=-0.021 Sum_probs=150.4
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHH
Q 044131 390 NGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEAREL 469 (784)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 469 (784)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 467788888888776531 111 0 11135666666665544 4567778888888887
Q ss_pred HhhcCC-----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHccCCHHHHHHH
Q 044131 470 FDLMSH-----KS----EVTWNTMISGYGLHGHGLEALQLFSEMLHSGI---RPS--GVTFLSVLYACSHAGLVREGDEI 535 (784)
Q Consensus 470 f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~pd--~~t~~~ll~a~~~~g~~~~a~~~ 535 (784)
|.+..+ .+ ..+|+.+...|...|++++|+..|++..+.-. .|. ..++..+...+.. |++++|.++
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 776542 11 34788888899999999999999998765311 222 3467778888888 999999999
Q ss_pred HHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHHhCC-C---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 044131 536 FQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALEFIKGLA-V---EPG----PAVWGALLGACMIHKDTNLARVA 603 (784)
Q Consensus 536 ~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~---~p~----~~~~~~ll~a~~~~g~~~~a~~~ 603 (784)
|++..+.+.-..+ ...+..+..+|.+.|++++|.+.+++.- + .++ ...|..+...+...|+++.|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9988753211111 4577888999999999999999988752 1 122 22666677777888999999999
Q ss_pred HHHHhcCCCCCcch-----HHHHHHHHHhcCChHHHHHH
Q 044131 604 SEKLFELDPENVGY-----HVLLSNIYSAERDYLQAATV 637 (784)
Q Consensus 604 ~~~~~~l~p~~~~~-----~~~l~~~y~~~g~~~~a~~~ 637 (784)
+++++ ++|+.... ...++..| ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 99976543 33444545 46676655553
No 112
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.53 E-value=2.1e-07 Score=94.92 Aligned_cols=192 Identities=8% Similarity=-0.075 Sum_probs=130.7
Q ss_pred chhhHhHHHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 044131 446 NIYVSTALIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYA 522 (784)
Q Consensus 446 ~~~~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a 522 (784)
+...+..+...|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++..+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 34456667777888888888888887765 2367788888888888888888888888887742 2345667778888
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLAR 601 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~ 601 (784)
+...|++++|...|+...+. .|+ ...+...+....+.++..+... .......++..+...+.. +. .|+.+.|.
T Consensus 82 ~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l~-~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-LI-AAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-HH-HHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-HH-HHHHHHHH
Confidence 88888888888888887643 232 1112122222222222222222 222333445555444433 22 68999999
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHhC
Q 044131 602 VASEKLFELDPENVGYHVLLSNIYSAE-RDYLQAATVRQVVKKR 644 (784)
Q Consensus 602 ~~~~~~~~l~p~~~~~~~~l~~~y~~~-g~~~~a~~~~~~m~~~ 644 (784)
..++++++++|++......+..++... ++++++.+++....+.
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999888888888888887 7899999999877653
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.51 E-value=3.3e-06 Score=86.20 Aligned_cols=160 Identities=7% Similarity=-0.031 Sum_probs=102.9
Q ss_pred HHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHH-HHHHH
Q 044131 413 VTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--KSEVTWNTM-ISGYG 489 (784)
Q Consensus 413 ~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~l-i~~~~ 489 (784)
..+..+...+...|+++.|...++.+.+.. +.+...+..|...|.+.|++++|...|+++.. |+...+... ...+.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~ 196 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL 196 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence 344455555666677777777777766654 44566777788888888888888888888763 444332222 23356
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHH
Q 044131 490 LHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKAL 569 (784)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~ 569 (784)
+.++.++|+..|++..+.. +.+...+..+..++...|++++|...|+.+.+...-..+...+..++.+|...|+.++|.
T Consensus 197 ~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~ 275 (287)
T 3qou_A 197 XQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALA 275 (287)
T ss_dssp HHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHH
T ss_pred hhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHH
Confidence 6677777888887777742 334556777777777788888888887777754211112445666666666666666666
Q ss_pred HHHHh
Q 044131 570 EFIKG 574 (784)
Q Consensus 570 ~~~~~ 574 (784)
..+++
T Consensus 276 ~~~r~ 280 (287)
T 3qou_A 276 SXYRR 280 (287)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
No 114
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.49 E-value=8.8e-07 Score=83.04 Aligned_cols=154 Identities=15% Similarity=0.067 Sum_probs=108.8
Q ss_pred HHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CCHHHHHHHHHH-HHHc
Q 044131 415 VSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH--KSEVTWNTMISG-YGLH 491 (784)
Q Consensus 415 ~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~~~~~~li~~-~~~~ 491 (784)
+......+...|+++.|...++.+.+.. +.+...+..+...|.+.|++++|...|++... |+...+..+... +...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence 4455667888999999999999887654 45678899999999999999999999999874 344433322211 2222
Q ss_pred CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC---cchHHHHHHHHHhcCCHHH
Q 044131 492 GHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL---AEHYACMVDILGRAGQLEK 567 (784)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~lv~~l~r~g~~~e 567 (784)
+...+|+..|++..+. .| +...+..+..++...|++++|...|+.+.+ ..|+ ...+..+..++...|+.++
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~---~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILK---VNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---TCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH---hCcccChHHHHHHHHHHHHHhCCCCc
Confidence 3334577888887773 45 456677777778888888888888887763 3444 3456667777777777777
Q ss_pred HHHHHHh
Q 044131 568 ALEFIKG 574 (784)
Q Consensus 568 A~~~~~~ 574 (784)
|...+++
T Consensus 163 A~~~y~~ 169 (176)
T 2r5s_A 163 IASKYRR 169 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.49 E-value=2e-06 Score=83.17 Aligned_cols=122 Identities=7% Similarity=-0.067 Sum_probs=89.7
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcC
Q 044131 518 SVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGACMIHK 595 (784)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~~~~g 595 (784)
.+...+...|++++|.+.|+.. +.|+...|..+...|.+.|++++|.+.+++.- . +.+...|..+..++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAV-----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTS-----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHH-----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcc
Confidence 3444455566666666666544 23455566666666666666666666665541 2 335668888888888999
Q ss_pred CHHHHHHHHHHHhcCCCCCc----------------chHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 596 DTNLARVASEKLFELDPENV----------------GYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 596 ~~~~a~~~~~~~~~l~p~~~----------------~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
+++.|...+++++++.|++. ..+..++.+|...|++++|.+.++...+.
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 99999999999999888877 88999999999999999999999887764
No 116
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.48 E-value=3.1e-06 Score=82.85 Aligned_cols=185 Identities=11% Similarity=0.003 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCC--chhhHhHHHHHHHhcCCHHHHHHHHhhcCC--CCH----HHHHH
Q 044131 412 PVTVSSILSACAQLGAISLGKWVHELVKSRNFES--NIYVSTALIDMYAKCGNIVEARELFDLMSH--KSE----VTWNT 483 (784)
Q Consensus 412 ~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~--~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~--~~~----~~~~~ 483 (784)
...+......+...|+++.|...++.+++..-.. ....+..+...|.+.|++++|...|++..+ |+. .+|..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4455566677889999999999999999864211 235677888999999999999999998762 321 24555
Q ss_pred HHHHHHH------------------cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCCHHHHHHHHHHhHHhcC
Q 044131 484 MISGYGL------------------HGHGLEALQLFSEMLHSGIRPSGVT-FLSVLYACSHAGLVREGDEIFQSMIHDHG 544 (784)
Q Consensus 484 li~~~~~------------------~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~g~~~~a~~~~~~m~~~~~ 544 (784)
+..++.. .|+.++|+..|+++++. .|+... ...... ...+...+.
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~---- 147 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA---- 147 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence 5555554 57899999999999984 465432 211110 000111111
Q ss_pred CCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch
Q 044131 545 FKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGY 617 (784)
Q Consensus 545 ~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 617 (784)
...-.+...|.+.|++++|...++++- ..|+ ...+..+..++...|+.+.|...++++....|++...
T Consensus 148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 122346778889999999999988762 3333 2478888999999999999999999999999987654
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.47 E-value=8.5e-07 Score=77.96 Aligned_cols=107 Identities=13% Similarity=0.051 Sum_probs=78.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGAC 591 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~ 591 (784)
.+......+.+.|++++|.+.|++.++. .|+ ...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 3445556666666666666666666532 343 556666667777777777777776654 2344 466899999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLSNI 624 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 624 (784)
...|++++|...++++++++|+++..+..|+++
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999988888765
No 118
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.47 E-value=1.2e-06 Score=78.69 Aligned_cols=99 Identities=10% Similarity=-0.066 Sum_probs=83.4
Q ss_pred CCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 545 FKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 545 ~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
+.|+ ...+..+...+.+.|++++|...+++.. ..| +...|..+..++...|+++.|...++++++++|+++..+..+
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 92 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA 92 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 3443 4455667777888888888888887762 344 677899999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 044131 622 SNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 622 ~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+.+|...|++++|.+.++...+
T Consensus 93 g~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 93 AECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999987764
No 119
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.46 E-value=3.7e-06 Score=86.11 Aligned_cols=162 Identities=7% Similarity=-0.123 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cc
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG-----VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AE 550 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~ 550 (784)
.+...+..+...|++++|++.+++..+.....+. ..+..+...+...|++++|..+|+...+...-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445566677788888888888777764322111 12334445566777888888888877642211111 34
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC------Cc
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGLA----VEPG-----PAVWGALLGACMIHKDTNLARVASEKLFELDPE------NV 615 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m~----~~p~-----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~------~~ 615 (784)
.|+.+...|...|++++|.+.+++.. ..|+ ..++..+...|...|++++|...+++++++.++ -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 67778888888888888888876641 1222 257888889999999999999999998876432 15
Q ss_pred chHHHHHHHHHhcCChHHH-HHHHHHH
Q 044131 616 GYHVLLSNIYSAERDYLQA-ATVRQVV 641 (784)
Q Consensus 616 ~~~~~l~~~y~~~g~~~~a-~~~~~~m 641 (784)
..|..++.+|...|++++| ...++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 5788999999999999999 6655543
No 120
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.45 E-value=2.8e-05 Score=79.31 Aligned_cols=219 Identities=13% Similarity=0.122 Sum_probs=101.2
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHhhhC--chHHHHHHHHHHHHcCCCCchhhHhHHHHHH----Hhc--
Q 044131 390 NGLTEEAISLFQEMQASKVAPNPVT-VSSILSACAQLG--AISLGKWVHELVKSRNFESNIYVSTALIDMY----AKC-- 460 (784)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~--~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y----~k~-- 460 (784)
....++|++++.+++.. .|+..| ++.--..+..++ .++++....+.++... +.+..+++---..+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 33445777777777653 454333 343334444455 5666666666665543 22333333322222 233
Q ss_pred -CCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 044131 461 -GNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGL--EALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDE 534 (784)
Q Consensus 461 -g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 534 (784)
+++++++.+++.+. .+|..+|+--.-.+.+.|.++ ++++.++++.+.. .-|...|..-.....+.|..
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~----- 196 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHL----- 196 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGG-----
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcccc-----
Confidence 44555555555443 234445555444444455444 5555555555432 12333333333333333330
Q ss_pred HHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHHHhcCC
Q 044131 535 IFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKD-TNLARVASEKLFELD 611 (784)
Q Consensus 535 ~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~-~~~a~~~~~~~~~l~ 611 (784)
.....+++++++++++ ...| |...|+.+...+...|+ .+.....++++++++
T Consensus 197 -------------------------~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~ 251 (306)
T 3dra_A 197 -------------------------ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLE 251 (306)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGG
T ss_pred -------------------------chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhcc
Confidence 0000044555554433 1222 44455555555554444 222334445544444
Q ss_pred ---CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 612 ---PENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 612 ---p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
|.++.....++.+|.+.|+.++|.+.++.+.
T Consensus 252 ~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 252 KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 4455555555555555555555555555554
No 121
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.45 E-value=3.9e-05 Score=78.18 Aligned_cols=236 Identities=11% Similarity=-0.000 Sum_probs=159.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCC---CChhHHHHHHHHHHhCC--ChhHHHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 044131 348 VLTALSTVYSRLNEMEAARKLFDESSE---KSLASWNAMIAGYTQNG--LTEEAISLFQEMQASKVAPN-PVTVSSILSA 421 (784)
Q Consensus 348 ~~~~Li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~pd-~~t~~~ll~a 421 (784)
+...+.....+....++|.++++.+.. .+...||.--..+...| +++++++.++.+... .|. ...++.--..
T Consensus 35 ~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--nPk~y~aW~~R~~i 112 (306)
T 3dra_A 35 IMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD--NEKNYQIWNYRQLI 112 (306)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--CTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--CcccHHHHHHHHHH
Confidence 333444444455555789999987653 35568999888888888 999999999999875 343 2334333333
Q ss_pred H----hhh---CchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHH--HHHHHHhhcC---CCCHHHHHHHHHHHH
Q 044131 422 C----AQL---GAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIV--EARELFDLMS---HKSEVTWNTMISGYG 489 (784)
Q Consensus 422 ~----~~~---~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~--~A~~~f~~~~---~~~~~~~~~li~~~~ 489 (784)
+ ... ++++++..+++.+.+.. +.+..+++--.-.+.+.|.++ ++++.++++. ..|..+|+--...+.
T Consensus 113 L~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~ 191 (306)
T 3dra_A 113 IGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3 444 78899999999999875 567778877777788888888 9999998887 367889987766666
Q ss_pred HcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcC
Q 044131 490 LHGH------GLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAG 563 (784)
Q Consensus 490 ~~g~------~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g 563 (784)
..|. ++++++.+++++.. .| -+...|+.+-.++.+.|
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~--~p-----------------------------------~n~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVK--CP-----------------------------------QNPSTWNYLLGIHERFD 234 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHH--CS-----------------------------------SCHHHHHHHHHHHHHTT
T ss_pred hccccchhhhHHHHHHHHHHHHHh--CC-----------------------------------CCccHHHHHHHHHHhcC
Confidence 6554 44555555554442 12 12344444444555555
Q ss_pred CH-HHHHHHHHhCC-C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-CCCCCcchHHHHHH
Q 044131 564 QL-EKALEFIKGLA-V----EPGPAVWGALLGACMIHKDTNLARVASEKLFE-LDPENVGYHVLLSN 623 (784)
Q Consensus 564 ~~-~eA~~~~~~m~-~----~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-l~p~~~~~~~~l~~ 623 (784)
+. +++.++.++.- . ..++..+..|..++...|+.++|..+++.+.+ ++|-...++...++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 235 RSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp CCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 42 22344544431 1 23566788888888888888899999998886 78887777665543
No 122
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.44 E-value=4.1e-06 Score=80.86 Aligned_cols=182 Identities=12% Similarity=0.030 Sum_probs=108.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCC
Q 044131 383 MIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGN 462 (784)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~ 462 (784)
....+.+.|++++|+..|++.... .|+........ . .. ..........+.+...|.+.|+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-~---~~--------------~~~~~~~~~~~~lg~~~~~~g~ 69 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-N---VD--------------KNSEISSKLATELALAYKKNRN 69 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-H---SC--------------TTSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-h---hc--------------chhhhhHHHHHHHHHHHHHCCC
Confidence 345566778888888888877653 34332211110 0 00 0001112233457777888888
Q ss_pred HHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC--HHHHHHHH
Q 044131 463 IVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGL--VREGDEIF 536 (784)
Q Consensus 463 ~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~--~~~a~~~~ 536 (784)
+++|...|++.. ..+...|..+...|...|++++|+..|++.++. .| +..++..+..++...|. .+.+...+
T Consensus 70 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~ 147 (208)
T 3urz_A 70 YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDY 147 (208)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 888888887765 346678888888888888888888888888874 44 45566666666655543 33445555
Q ss_pred HHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHH
Q 044131 537 QSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEPGPAVWGALLG 589 (784)
Q Consensus 537 ~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~~~~~~~ll~ 589 (784)
+... ...|....+......+...|++++|...+++. ...|+......|..
T Consensus 148 ~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~~ 198 (208)
T 3urz_A 148 KKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLDK 198 (208)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 5443 22222223334455566678888888888775 47787766655544
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.44 E-value=1.1e-05 Score=82.59 Aligned_cols=159 Identities=8% Similarity=-0.108 Sum_probs=109.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHH
Q 044131 484 MISGYGLHGHGLEALQLFSEMLHSGI-RPSGV----TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYAC 554 (784)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~-~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 554 (784)
.+..+...|++++|+.++++..+... .|+.. .+..+...+...|++++|..+|+...+...-.++ ...|+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35566777788888888877776321 22211 2234555566667788888888877652211222 225777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------cchHH
Q 044131 555 MVDILGRAGQLEKALEFIKGLA-----V---EPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPEN------VGYHV 619 (784)
Q Consensus 555 lv~~l~r~g~~~eA~~~~~~m~-----~---~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~ 619 (784)
+...|.+.|++++|.+.++++- . .|. ..++..+...+...|++++|...+++++++.+.. +..|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 7788888888888877776541 1 122 2378889999999999999999999999865433 56789
Q ss_pred HHHHHHHhcCC-hHHHHHHHHHHH
Q 044131 620 LLSNIYSAERD-YLQAATVRQVVK 642 (784)
Q Consensus 620 ~l~~~y~~~g~-~~~a~~~~~~m~ 642 (784)
.++.+|...|+ +++|.+.++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699988876553
No 124
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.42 E-value=6.1e-06 Score=79.65 Aligned_cols=146 Identities=9% Similarity=-0.072 Sum_probs=106.8
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044131 450 STALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLV 529 (784)
Q Consensus 450 ~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 529 (784)
+..+...|...|++++|...|++...++...|..+...|...|++++|++.|++..+.. +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34556677888888888888888887788888888888888888888888888888753 34556777777888888888
Q ss_pred HHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 530 REGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPG-PAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 530 ~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
++|.+.|+...+. .|+..... +... .+...|+ ..+|..+..++...|+++.|...+++++
T Consensus 88 ~~A~~~~~~al~~---~~~~~~~~-----~~~~-----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQ---LRGNQLID-----YKIL-----------GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHT---TTTCSEEE-----CGGG-----------TBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCccHHH-----HHHh-----------ccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888877643 23211000 0000 0123443 3578888889999999999999999999
Q ss_pred cCCCCCc
Q 044131 609 ELDPENV 615 (784)
Q Consensus 609 ~l~p~~~ 615 (784)
++.|++.
T Consensus 149 ~~~p~~~ 155 (213)
T 1hh8_A 149 SMKSEPR 155 (213)
T ss_dssp TTCCSGG
T ss_pred HcCcccc
Confidence 9999863
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.40 E-value=2.5e-06 Score=73.95 Aligned_cols=113 Identities=20% Similarity=0.200 Sum_probs=73.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA--VEPGPAVWGALLGACM 592 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~--~~p~~~~~~~ll~a~~ 592 (784)
++..+...+...|++++|.++|+.+.+.. +.+...+..+...+.+.|++++|..+++++. .+.+..+|..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 33444444444555555555555444321 1123445555555666666666666655542 2335667888888899
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 044131 593 IHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAER 629 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 629 (784)
..|+++.|...++++++.+|+++..+..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998988888876654
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.40 E-value=2.4e-06 Score=75.21 Aligned_cols=113 Identities=14% Similarity=0.023 Sum_probs=73.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGAC 591 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~ 591 (784)
.+..+...+...|++++|.++|+...+ ..| +...+..+...+...|++++|.+.+++.- . +.+..+|..+..++
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~---~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIK---RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHT---TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 344444444444445555544444432 222 23445555555555566666655555431 2 23566888888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERD 630 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~ 630 (784)
...|+++.|...++++++++|++...+..++.+|...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999998887664
No 127
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.39 E-value=7e-06 Score=79.51 Aligned_cols=172 Identities=12% Similarity=-0.095 Sum_probs=110.3
Q ss_pred HHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC-CCHHHHHHHHHHHHHcC----CHHHHHHHHHHHH
Q 044131 431 GKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH-KSEVTWNTMISGYGLHG----HGLEALQLFSEML 505 (784)
Q Consensus 431 a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~ 505 (784)
|.+.+....+.| ++..+..|..+|...+++++|...|++..+ .+..++..|...|.. + +.++|++.|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444444443 455555666666666666666666666542 355566666666665 5 6777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhHHhcCCCCC---cchHHHHHHHHHh----cCCHHHHHHHHHh
Q 044131 506 HSGIRPSGVTFLSVLYACSH----AGLVREGDEIFQSMIHDHGFKPL---AEHYACMVDILGR----AGQLEKALEFIKG 574 (784)
Q Consensus 506 ~~g~~pd~~t~~~ll~a~~~----~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~lv~~l~r----~g~~~eA~~~~~~ 574 (784)
+.| +...+..|...+.. .++.++|.++|+... ...|. ...+..|..+|.. .+++++|..++++
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~---~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA---RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT---SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH---HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 654 45555666666665 677778888777765 23342 5666777777776 6778888888877
Q ss_pred CC-CCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHhcCCC
Q 044131 575 LA-VEPGPAVWGALLGACMIH-K-----DTNLARVASEKLFELDP 612 (784)
Q Consensus 575 m~-~~p~~~~~~~ll~a~~~~-g-----~~~~a~~~~~~~~~l~p 612 (784)
.. ..+++..+..|...+... | |.++|...++++.+..+
T Consensus 155 A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 155 SSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 63 234555677777766542 3 88888888888887654
No 128
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.36 E-value=1.6e-06 Score=89.54 Aligned_cols=197 Identities=10% Similarity=-0.056 Sum_probs=149.6
Q ss_pred hhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 044131 424 QLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSE 503 (784)
Q Consensus 424 ~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 503 (784)
..|++++|.++++.+.+..- .. .+...|++++|...|.. ....|...|++++|+..|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence 35778889998888876421 11 11115889999888775 35678899999999999998
Q ss_pred HHHCCC---CC-C-HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC--CC--cchHHHHHHHHHhcCCHHHHHHHHHh
Q 044131 504 MLHSGI---RP-S-GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFK--PL--AEHYACMVDILGRAGQLEKALEFIKG 574 (784)
Q Consensus 504 m~~~g~---~p-d-~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~--p~--~~~~~~lv~~l~r~g~~~eA~~~~~~ 574 (784)
..+... .+ . ..+|..+...|...|++++|..+|++..+-+.-. |. ...+..+..+|.+ |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 876311 11 1 3468888899999999999999999876543111 11 4578888999988 999999999987
Q ss_pred CC-CCC---C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc------hHHHHHHHHHhcCChHHHHHHHHH
Q 044131 575 LA-VEP---G----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVG------YHVLLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 575 m~-~~p---~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~------~~~~l~~~y~~~g~~~~a~~~~~~ 640 (784)
.- +.| + ..++..+...+...|+++.|...+++++++.|++.. .+..++.+|...|++++|...++.
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 51 111 1 457888999999999999999999999998765542 667788889999999999999987
Q ss_pred HH
Q 044131 641 VK 642 (784)
Q Consensus 641 m~ 642 (784)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 65
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.36 E-value=3.1e-06 Score=73.95 Aligned_cols=115 Identities=15% Similarity=0.079 Sum_probs=78.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACM 592 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~ 592 (784)
.+..+...+...|++++|..+|+...+.. +.+...+..+...+...|++++|.+.+++.. ..| +...|..+...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 34444445555555555555555554321 1124455555666666666666666665541 233 4667888888899
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 044131 593 IHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDY 631 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~ 631 (784)
..|+++.|...++++++++|+++..+..++.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999888875
No 130
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.35 E-value=1.7e-06 Score=90.66 Aligned_cols=158 Identities=15% Similarity=0.096 Sum_probs=109.2
Q ss_pred CHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 044131 462 NIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQS 538 (784)
Q Consensus 462 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~ 538 (784)
++++|...|+.... .+...|..+...|.+.|++++|+..|++.++. .|+...+ ..+++.+.- .
T Consensus 128 ~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~~~-~ 193 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF-----------SNEEAQKAQ-A 193 (336)
T ss_dssp EEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC-----------CSHHHHHHH-H
T ss_pred ecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC-----------ChHHHHHHH-H
Confidence 34444444444331 24557777888888888888888888888774 3332100 001111100 0
Q ss_pred hHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc
Q 044131 539 MIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVG 616 (784)
Q Consensus 539 m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~ 616 (784)
+ ....|..+..+|.+.|++++|++.+++. .+.| +...|..+..++...|+++.|...++++++++|+++.
T Consensus 194 ~--------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~ 265 (336)
T 1p5q_A 194 L--------RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265 (336)
T ss_dssp H--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred H--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence 0 1245666777777777777777777665 2344 5678999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCChHHHH-HHHHHH
Q 044131 617 YHVLLSNIYSAERDYLQAA-TVRQVV 641 (784)
Q Consensus 617 ~~~~l~~~y~~~g~~~~a~-~~~~~m 641 (784)
.+..++.+|...|+++++. +.++.|
T Consensus 266 a~~~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 266 AKTQLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999994 455555
No 131
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.35 E-value=3.2e-06 Score=74.00 Aligned_cols=94 Identities=14% Similarity=0.035 Sum_probs=76.8
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 550 EHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 550 ~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
..+..+...+.+.|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++..+..++.+|..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34555666777778888888777765 2334 567888888899999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHh
Q 044131 628 ERDYLQAATVRQVVKK 643 (784)
Q Consensus 628 ~g~~~~a~~~~~~m~~ 643 (784)
.|++++|.+.++...+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 9999999998887655
No 132
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.33 E-value=5e-06 Score=76.40 Aligned_cols=123 Identities=11% Similarity=-0.012 Sum_probs=81.1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHh
Q 044131 517 LSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVE-PGPAVWGALLGACMI 593 (784)
Q Consensus 517 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~-p~~~~~~~ll~a~~~ 593 (784)
..+...+...|++++|...|+...+. .| +...+..+...+...|++++|.+.+++. ... .+..+|..+..++..
T Consensus 17 ~~~a~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 17 KTQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 33344444455555555555544432 22 2444555555556666666666655543 122 346678888888999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcchHHHHH--HHHHhcCChHHHHHHHHHHH
Q 044131 594 HKDTNLARVASEKLFELDPENVGYHVLLS--NIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 594 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~--~~y~~~g~~~~a~~~~~~m~ 642 (784)
.|+++.|...++++++++|+++..+..+. ..+...|++++|.+.+....
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 99999999999999999999888775544 44888899999999887654
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.30 E-value=6.8e-05 Score=76.53 Aligned_cols=158 Identities=8% Similarity=-0.096 Sum_probs=119.2
Q ss_pred HHHHHHhcCCHHHHHHHHhhcCC-----CCH---H-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC----HHHHHH
Q 044131 453 LIDMYAKCGNIVEARELFDLMSH-----KSE---V-TWNTMISGYGLHGHGLEALQLFSEMLHSGIR-PS----GVTFLS 518 (784)
Q Consensus 453 Li~~y~k~g~~~~A~~~f~~~~~-----~~~---~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd----~~t~~~ 518 (784)
.+..+...|++++|...+++..+ ++. . .+..+...+...|++++|+..|++..+.... +| ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46778899999999999988653 121 1 3334666677778999999999999984332 23 236888
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcC----CCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHH
Q 044131 519 VLYACSHAGLVREGDEIFQSMIHDHG----FKPL-AEHYACMVDILGRAGQLEKALEFIKGL-------AVEPG-PAVWG 585 (784)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~m~~~~~----~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~ 585 (784)
+...+...|++++|..+|+.+.+... ..|. ...|..+...|.+.|++++|.+++++. ...+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999874321 1222 347888999999999999999998765 12233 56888
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHhcC
Q 044131 586 ALLGACMIHKD-TNLARVASEKLFEL 610 (784)
Q Consensus 586 ~ll~a~~~~g~-~~~a~~~~~~~~~l 610 (784)
.+..++...|+ .+.|...+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999995 69999999998763
No 134
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.28 E-value=1.5e-05 Score=79.54 Aligned_cols=180 Identities=10% Similarity=-0.065 Sum_probs=129.9
Q ss_pred hcCCHHHHHHHHhhcC---CCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHCCCCCCH---------------
Q 044131 459 KCGNIVEARELFDLMS---HKSEVTWNTM-------ISGYGLHGHGLEALQLFSEMLHSGIRPSG--------------- 513 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~pd~--------------- 513 (784)
..++.+.|.+.|.++. ......|+.+ ...+...++..+++..+.+-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 4688888888888776 2356688877 4556666666666666655444 33322
Q ss_pred -------HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH----H
Q 044131 514 -------VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGP----A 582 (784)
Q Consensus 514 -------~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~----~ 582 (784)
.....+..++...|++++|.+.|+.+.. ..|+......+..++.+.|++++|+..++.....|+. .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~---~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPV---AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCC---TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 1233455677888999999999987763 3454325556667888999999999999876434433 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFELD--PE-NVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~l~--p~-~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++..|..++...|+.++|+..++++..-. |. .+.....++.++.+.|+.++|...++.+..
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888889999999999999999987533 54 445778889999999999999999988876
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.28 E-value=4.7e-06 Score=83.08 Aligned_cols=133 Identities=11% Similarity=-0.076 Sum_probs=70.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC--cchHHHHHHHHHhc
Q 044131 485 ISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL--AEHYACMVDILGRA 562 (784)
Q Consensus 485 i~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~r~ 562 (784)
...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+. . .|. ...+..+..++.+.
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHHHC
Confidence 33444445555555555444432 233333333333455555555555555533210 0 110 12344555566666
Q ss_pred CCHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 563 GQLEKALEFIKGLA---VEPG--PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 563 g~~~eA~~~~~~m~---~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
|++++|++.+++.. ..|. ...+..+..+++..|+.++|...++++++.+|+ +..+..|.
T Consensus 185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~ 248 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK 248 (282)
T ss_dssp TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence 66666666666541 2143 235666777777888888888888888888887 65555553
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.25 E-value=6.3e-06 Score=77.05 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=71.1
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhcCCH--HH
Q 044131 526 AGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGA-CMIHKDT--NL 599 (784)
Q Consensus 526 ~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a-~~~~g~~--~~ 599 (784)
.|++++|...|+...+. .| +...|..+...|...|++++|...+++.- ..| +...|..+..+ +...|++ +.
T Consensus 23 ~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp ----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred ccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 34455555555554432 22 24455555555555666666665555441 222 45566666666 6677777 77
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 600 ARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 600 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|...++++++++|+++..+..++.+|...|++++|...++...+
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 88888888888888777788888888888888888887776655
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.23 E-value=1.7e-05 Score=75.74 Aligned_cols=154 Identities=14% Similarity=0.023 Sum_probs=79.9
Q ss_pred hcCCHHHHHH---HHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCCHH
Q 044131 459 KCGNIVEARE---LFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHS----GIRP-SGVTFLSVLYACSHAGLVR 530 (784)
Q Consensus 459 k~g~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-d~~t~~~ll~a~~~~g~~~ 530 (784)
..|++++|.+ .+..-+.....+|+.+...|...|++++|+..|++..+. +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4566777776 544433334556677777777777777777777766541 1111 1234455555566666666
Q ss_pred HHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 531 EGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEP--GPAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 531 ~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
+|.++|++..+...-.++ .| ...++..+...+...|+++.|...+++++
T Consensus 84 ~A~~~~~~al~~~~~~~~-----------------------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 84 AARRCFLEERELLASLPE-----------------------------DPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHHSCC-----------------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc-----------------------------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 666666555432111110 11 01234445555555555555555555555
Q ss_pred cCCC--CC----cchHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 609 ELDP--EN----VGYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 609 ~l~p--~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
++.+ .+ ...+..++.+|...|++++|.+.++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 4321 11 112456677777777777776666544
No 138
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.23 E-value=2.8e-06 Score=81.28 Aligned_cols=171 Identities=9% Similarity=-0.019 Sum_probs=101.2
Q ss_pred HHHHHHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 044131 452 ALIDMYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGL 528 (784)
Q Consensus 452 ~Li~~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~ 528 (784)
..+......|.++.|.+.|+.-.. .....|..+...+...|++++|+..|++..+. .|+...+... .
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~--------~ 78 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQ--------I 78 (198)
T ss_dssp -------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCH--------H
T ss_pred chhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcccccchh--------h
Confidence 334445556677777776664332 23456777777888888889998888888873 2221100000 0
Q ss_pred HHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 044131 529 VREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEK 606 (784)
Q Consensus 529 ~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~ 606 (784)
.+.-. ..+ ....|..+..+|.+.|++++|...+++. ...| +..+|..+..++...|+++.|...+++
T Consensus 79 ~~~~~---~~~--------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 147 (198)
T 2fbn_A 79 LLDKK---KNI--------EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYK 147 (198)
T ss_dssp HHHHH---HHH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHH---HHH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 00000 000 1234556666677777777777777654 2233 566888899999999999999999999
Q ss_pred HhcCCCCCcchHHHHHHHHHhcCChHHHH-HHHHHHHh
Q 044131 607 LFELDPENVGYHVLLSNIYSAERDYLQAA-TVRQVVKK 643 (784)
Q Consensus 607 ~~~l~p~~~~~~~~l~~~y~~~g~~~~a~-~~~~~m~~ 643 (784)
+++++|+++..+..++.++...|+.+++. ..++.|-.
T Consensus 148 al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 148 AASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999988888776 44444433
No 139
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.23 E-value=3.8e-06 Score=73.12 Aligned_cols=94 Identities=18% Similarity=0.123 Sum_probs=83.2
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 550 EHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 550 ~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
..+..+...+.+.|++++|...+++.- ..| +...|..+..++...|+.+.|+..++++++++|+++..+..|+.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 456667788889999999999998863 455 677999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHh
Q 044131 628 ERDYLQAATVRQVVKK 643 (784)
Q Consensus 628 ~g~~~~a~~~~~~m~~ 643 (784)
.|++++|...++...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999987765
No 140
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.23 E-value=7e-06 Score=69.47 Aligned_cols=96 Identities=10% Similarity=0.018 Sum_probs=79.3
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CcchHHHHHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGACMIHKDTNLARVASEKLFELDPE--NVGYHVLLSNI 624 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~--~~~~~~~l~~~ 624 (784)
...+..+...+.+.|++++|...+++.- . +.+..+|..+..++...|+++.|...+++++++.|+ ++..+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 5566677778888888888888887652 2 335678888888899999999999999999999999 88899999999
Q ss_pred HHhc-CChHHHHHHHHHHHhC
Q 044131 625 YSAE-RDYLQAATVRQVVKKR 644 (784)
Q Consensus 625 y~~~-g~~~~a~~~~~~m~~~ 644 (784)
|... |++++|.+.++...+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHhCCHHHHHHHHHHHhhc
Confidence 9999 9999999988877653
No 141
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.21 E-value=5.3e-06 Score=77.55 Aligned_cols=129 Identities=12% Similarity=0.099 Sum_probs=92.8
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHH-HHhcCCH--
Q 044131 490 LHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDI-LGRAGQL-- 565 (784)
Q Consensus 490 ~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~-l~r~g~~-- 565 (784)
..|++++|+..|++..+.. +.+...+..+...+...|++++|..+|+...+. .| +...+..+..+ +.+.|++
T Consensus 22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcch
Confidence 4567777777777776642 335566777777777888888888888877643 23 35566677777 6678887
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 566 EKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 566 ~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
++|...+++. ...| +...|..+...+...|+++.|...++++++++|+++.....+.
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 156 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVE 156 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence 8888888765 2344 4678888999999999999999999999999999876655443
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.21 E-value=3.5e-05 Score=78.75 Aligned_cols=161 Identities=7% Similarity=-0.119 Sum_probs=114.5
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHhhcC---CCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC--HH
Q 044131 449 VSTALIDMYAKCGNIVEARELFDLMS---HKSE------VTWNTMISGYGLHGHGLEALQLFSEMLHSGI---RPS--GV 514 (784)
Q Consensus 449 ~~~~Li~~y~k~g~~~~A~~~f~~~~---~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~pd--~~ 514 (784)
.+...+..|...|++++|.+.+.+.. .... ..+..+...+...|++++|+..|++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34456677888899999888886543 1111 2334455566777899999999998876321 122 34
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-----cchHHHHHHHHHhcCCHHHHHHHHHhCC-C------CCC-H
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-----AEHYACMVDILGRAGQLEKALEFIKGLA-V------EPG-P 581 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~------~p~-~ 581 (784)
++..+...+...|++++|..+|++..+.....|+ ...|..+...|.+.|++++|.+++++.- + .+. .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7788888899999999999999988733222233 2578888889999999999999887641 1 111 5
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHhc
Q 044131 582 AVWGALLGACMIHKDTNLA-RVASEKLFE 609 (784)
Q Consensus 582 ~~~~~ll~a~~~~g~~~~a-~~~~~~~~~ 609 (784)
.+|..+...+...|+.+.| ...++++++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788888899999999999 777888765
No 143
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.18 E-value=1.5e-05 Score=70.61 Aligned_cols=96 Identities=15% Similarity=0.055 Sum_probs=77.9
Q ss_pred CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 044131 548 LAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIY 625 (784)
Q Consensus 548 ~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y 625 (784)
+...+..+...+...|++++|...+++. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+|
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3556666777777777777777777664 2334 4668888888889999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHh
Q 044131 626 SAERDYLQAATVRQVVKK 643 (784)
Q Consensus 626 ~~~g~~~~a~~~~~~m~~ 643 (784)
...|++++|...++...+
T Consensus 88 ~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999998887654
No 144
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.18 E-value=2.9e-06 Score=76.90 Aligned_cols=104 Identities=12% Similarity=0.034 Sum_probs=71.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGAC 591 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~ 591 (784)
.+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|.+.+++. ...| ++..|..+..++
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3444555566666666666666665532 33 3555666666667777777777776664 2334 456788888899
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
...|+++.|+..+++++++.|+++......
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 129 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEFXELS 129 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcchHHH
Confidence 999999999999999999999888765443
No 145
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.16 E-value=1.5e-05 Score=67.99 Aligned_cols=105 Identities=13% Similarity=0.054 Sum_probs=49.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGAC 591 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~ 591 (784)
.+..+...+...|++++|...|+...+. .| +...+..+...+.+.|++++|.+.+++. ...| +...|..+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL---DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3444455555555555555555555432 22 2344444444555555555555544443 1122 233444444445
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
...|+++.|...++++++++|+++..+..++
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 113 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQ 113 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5555555555555555555554444444443
No 146
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=2.1e-05 Score=70.46 Aligned_cols=77 Identities=13% Similarity=-0.020 Sum_probs=49.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
.|..+...|...|++++|.+.+++. ...| +...|..+..++...|+++.|...++++++++|+++..+..+..+...
T Consensus 67 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 67 LHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 3334444444445555555444433 1223 455777777788888888888888888888888887777777666543
No 147
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.15 E-value=4.7e-05 Score=72.48 Aligned_cols=127 Identities=15% Similarity=0.044 Sum_probs=68.0
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC--
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSH---------KSEVTWNTMISGYGLHGHGLEALQLFSEMLHS----GIRP-- 511 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-- 511 (784)
..++..+...|...|++++|...|++... ....+++.+...|...|++++|+..|++..+. +-.|
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 33444455555555555555555544331 12345666777777777777777777776542 1111
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHH
Q 044131 512 SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALEFIK 573 (784)
Q Consensus 512 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~ 573 (784)
....+..+...+...|++++|..++++..+...-.++ ...+..+...+.+.|++++|.+.++
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 1234556666777777777777777766532110111 1223444555555555555555444
No 148
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.15 E-value=2.6e-05 Score=66.52 Aligned_cols=93 Identities=13% Similarity=0.039 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAE 628 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~ 628 (784)
.+..+...+...|++++|.+.+++.. ..| +...|..+...+...|+++.|...++++++++|+++..+..++.+|...
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 85 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFL 85 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 34444455555555555555555431 122 3445555555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHh
Q 044131 629 RDYLQAATVRQVVKK 643 (784)
Q Consensus 629 g~~~~a~~~~~~m~~ 643 (784)
|++++|.+.++...+
T Consensus 86 ~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 86 NRFEEAKRTYEEGLK 100 (118)
T ss_dssp TCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 555555555554443
No 149
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.12 E-value=5.8e-06 Score=90.93 Aligned_cols=115 Identities=11% Similarity=-0.004 Sum_probs=84.7
Q ss_pred HHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 044131 523 CSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNL 599 (784)
Q Consensus 523 ~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~ 599 (784)
+...|++++|.++|++..+. .|+ ...|..+..+|.+.|++++|++.+++. ...| +..+|..+..++...|++++
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 44556666666666666533 343 556666777777777777777777665 2444 46688999999999999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHH--HHhcCChHHHHHHHHH
Q 044131 600 ARVASEKLFELDPENVGYHVLLSNI--YSAERDYLQAATVRQV 640 (784)
Q Consensus 600 a~~~~~~~~~l~p~~~~~~~~l~~~--y~~~g~~~~a~~~~~~ 640 (784)
|+..++++++++|+++..+..++.+ +...|++++|.+.++.
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999988 8889999999998763
No 150
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.12 E-value=3.1e-05 Score=66.77 Aligned_cols=95 Identities=24% Similarity=0.280 Sum_probs=85.7
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
...+..+...+.+.|++++|.++++++. . +.+..+|..+...+...|+++.|...++++++..|+++..+..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 4677888899999999999999998873 2 3467789999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHh
Q 044131 627 AERDYLQAATVRQVVKK 643 (784)
Q Consensus 627 ~~g~~~~a~~~~~~m~~ 643 (784)
..|++++|.+.++.+.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999988765
No 151
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.11 E-value=1e-05 Score=74.63 Aligned_cols=91 Identities=14% Similarity=0.050 Sum_probs=45.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 044131 552 YACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAER 629 (784)
Q Consensus 552 ~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g 629 (784)
+..+...+.+.|++++|++.+++. ...| +...|..+..++...|+++.|+..++++++++|+++..|..++.+|...|
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 93 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMA 93 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence 333444444444444444444433 1222 34455555555555555555555555555555555555555555555555
Q ss_pred ChHHHHHHHHHHH
Q 044131 630 DYLQAATVRQVVK 642 (784)
Q Consensus 630 ~~~~a~~~~~~m~ 642 (784)
++++|.+.++...
T Consensus 94 ~~~~A~~~~~~al 106 (164)
T 3sz7_A 94 DYKGAKEAYEKGI 106 (164)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 5555555554443
No 152
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.09 E-value=7.5e-06 Score=74.29 Aligned_cols=95 Identities=13% Similarity=0.038 Sum_probs=53.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 044131 518 SVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIH 594 (784)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~ 594 (784)
.+...+...|++++|..+|+...+. .|+ ...|..+..+|.+.|++++|.+.+++. .+.| ++..|..+..++...
T Consensus 41 ~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~l 117 (151)
T 3gyz_A 41 SYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRL 117 (151)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 3334444444444444444444321 232 344445555555555555555555444 1233 355677777777778
Q ss_pred CCHHHHHHHHHHHhcCCCCCc
Q 044131 595 KDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 595 g~~~~a~~~~~~~~~l~p~~~ 615 (784)
|++++|...+++++++.|+++
T Consensus 118 g~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 118 KAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp TCHHHHHHHHHHHHHHCCCHH
T ss_pred CCHHHHHHHHHHHHHhCCCHH
Confidence 888888888888888877643
No 153
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.09 E-value=1.6e-05 Score=73.11 Aligned_cols=63 Identities=10% Similarity=0.023 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 581 PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 581 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..+|..+..++...|+++.|...++++++++|+++..|..++.+|...|++++|...++...+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 457888888999999999999999999999999999999999999999999999999887655
No 154
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.09 E-value=3.1e-05 Score=67.81 Aligned_cols=95 Identities=16% Similarity=0.107 Sum_probs=86.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...++++++++|+++..+..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 567888899999999999999999886 4455 67799999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHh
Q 044131 627 AERDYLQAATVRQVVKK 643 (784)
Q Consensus 627 ~~g~~~~a~~~~~~m~~ 643 (784)
..|++++|.+.++...+
T Consensus 96 ~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 99999999999987765
No 155
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=3.8e-05 Score=68.81 Aligned_cols=95 Identities=16% Similarity=0.022 Sum_probs=84.0
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
...+..+...+.+.|++++|.+.+++. ...|+ ..+|..+..++...|+++.|...++++++++|+++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 556777788888888888888888775 45676 5688899999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHh
Q 044131 624 IYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 624 ~y~~~g~~~~a~~~~~~m~~ 643 (784)
+|...|++++|.+.++...+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999987765
No 156
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.08 E-value=4e-05 Score=70.22 Aligned_cols=125 Identities=12% Similarity=-0.001 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDI 558 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~ 558 (784)
.|..+...+...|++++|+..|++..+.. +.+..++..+...+...|++++|.++|+...+. .| +...|..+...
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHHHH
Confidence 34444444445555555555555544421 223344444444555555555555555554432 22 23444455555
Q ss_pred HHhcCCHHHHHHHHHhCC-CCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHh
Q 044131 559 LGRAGQLEKALEFIKGLA-VEP-GPAVWGA--LLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 559 l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~--ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
+.+.|++++|.+.+++.. ..| +...|.. ++..+...|++++|...+++..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 555555555555554431 222 2233322 2222444556666666555543
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.07 E-value=1.1e-05 Score=72.44 Aligned_cols=106 Identities=15% Similarity=0.042 Sum_probs=71.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 044131 516 FLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACM 592 (784)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~ 592 (784)
+..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|...+++.- ..| ++..|..+..++.
T Consensus 21 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 21 LYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344445555566666666666655532 33 34555666666666677777766666542 233 4557788888889
Q ss_pred hcCCHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 044131 593 IHKDTNLARVASEKLFELDPENVGYHVLLSNI 624 (784)
Q Consensus 593 ~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 624 (784)
..|+++.|...++++++++|+++........+
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 129 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEALAARA 129 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHHHHHH
Confidence 99999999999999999999888776655444
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.06 E-value=2e-05 Score=72.52 Aligned_cols=106 Identities=19% Similarity=0.057 Sum_probs=71.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGAC 591 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~ 591 (784)
.+..+...+...|++++|.++|+..++. .| +...|..+..+|.+.|++++|++.+++. .+.| +...|..+..++
T Consensus 13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 13 KLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444445555555555555555555432 23 2455556666666666666666666554 2344 466888999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
...|+++.|...++++++++|+++..+...+-
T Consensus 90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 121 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRGL 121 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999987665543
No 159
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.05 E-value=1.8e-05 Score=69.11 Aligned_cols=106 Identities=12% Similarity=-0.024 Sum_probs=64.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 044131 517 LSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMI 593 (784)
Q Consensus 517 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~ 593 (784)
..+...+...|++++|...|+...+. .| +...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++..
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 33344444444555555554444422 22 2444555555555555555555555543 1233 45677888888888
Q ss_pred cCCHHHHHHHHHHHhcCC------CCCcchHHHHHHHH
Q 044131 594 HKDTNLARVASEKLFELD------PENVGYHVLLSNIY 625 (784)
Q Consensus 594 ~g~~~~a~~~~~~~~~l~------p~~~~~~~~l~~~y 625 (784)
.|+++.|...++++++++ |+++.....+..+.
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 888888888888888888 77777776666554
No 160
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.03 E-value=4.6e-05 Score=66.27 Aligned_cols=95 Identities=14% Similarity=0.050 Sum_probs=85.5
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
...+..+...+...|++++|.+.+++.. ..| +..+|..+...+...|+++.|...++++++++|+++..+..++.+|.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 5567788889999999999999998862 334 67789999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHh
Q 044131 627 AERDYLQAATVRQVVKK 643 (784)
Q Consensus 627 ~~g~~~~a~~~~~~m~~ 643 (784)
..|++++|.+.++...+
T Consensus 92 ~~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALE 108 (131)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 99999999999988765
No 161
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.02 E-value=0.00064 Score=69.70 Aligned_cols=227 Identities=15% Similarity=0.070 Sum_probs=141.5
Q ss_pred hCCChh-HHHHHHHHHHhCCCCCCHHH-HHHHHHHHhhhCc----------hHHHHHHHHHHHHcCCCCchhhHhHHHHH
Q 044131 389 QNGLTE-EAISLFQEMQASKVAPNPVT-VSSILSACAQLGA----------ISLGKWVHELVKSRNFESNIYVSTALIDM 456 (784)
Q Consensus 389 ~~g~~~-~A~~l~~~m~~~g~~pd~~t-~~~ll~a~~~~~~----------~~~a~~i~~~~~~~g~~~~~~~~~~Li~~ 456 (784)
+.|.++ +|++++..+... .|+..| ++.=-..+...+. ++.+..++..+.... +-+..+++--.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445544 678888877753 555443 2222122222222 566777777777654 4566667666666
Q ss_pred HHhcC--CHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----
Q 044131 457 YAKCG--NIVEARELFDLMS---HKSEVTWNTMISGYGLHGH-GLEALQLFSEMLHSGIRPSGVTFLSVLYACSHA---- 526 (784)
Q Consensus 457 y~k~g--~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~---- 526 (784)
+.+.| .+++++.+++.+. .+|..+|+--.-.+...|. .+++++.++++++.. +-|...|+.......+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 66667 4788888888776 4677788887777777777 588888888888754 33455555544444433
Q ss_pred ----------CCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhc-----------CCHHHHHHHHHhC-CCCCCHHH
Q 044131 527 ----------GLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRA-----------GQLEKALEFIKGL-AVEPGPAV 583 (784)
Q Consensus 527 ----------g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~-----------g~~~eA~~~~~~m-~~~p~~~~ 583 (784)
+.++++++++...... .|+ ...|+-+-.++.+. +.++++++.++++ ...||. .
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~ 272 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-K 272 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-H
T ss_pred ccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-c
Confidence 4577788888877643 454 55565555555555 4577787777776 356654 4
Q ss_pred HHHHHHHH-----HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHH
Q 044131 584 WGALLGAC-----MIHKDTNLARVASEKLFELDPENVGYHVLLSN 623 (784)
Q Consensus 584 ~~~ll~a~-----~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~ 623 (784)
|.-+..+. ...|..++....+.++.++||...+.|.-|..
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHH
Confidence 43222221 23566777788888888888887777766544
No 162
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.02 E-value=1.1e-05 Score=88.85 Aligned_cols=117 Identities=10% Similarity=0.039 Sum_probs=66.5
Q ss_pred HHHHHHhcCCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 044131 453 LIDMYAKCGNIVEARELFDLMS---HKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLV 529 (784)
Q Consensus 453 Li~~y~k~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~ 529 (784)
+...|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.|++..+.. +.+..++..+..++...|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 3344566677777777776554 2345667777777777777777777777766642 22345566666666667777
Q ss_pred HHHHHHHHHhHHhcCCCCC-cchHHHHHHH--HHhcCCHHHHHHHHH
Q 044131 530 REGDEIFQSMIHDHGFKPL-AEHYACMVDI--LGRAGQLEKALEFIK 573 (784)
Q Consensus 530 ~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~--l~r~g~~~eA~~~~~ 573 (784)
++|.+.|++..+. .|+ ...+..+..+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKV---KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHH---STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777777666543 232 2333333333 555566666666555
No 163
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.00 E-value=0.0014 Score=67.57 Aligned_cols=157 Identities=13% Similarity=0.017 Sum_probs=81.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHhhhC-chHHHHHHHHHHHHcCCCCchhhHhHHHHHH
Q 044131 380 WNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPV-TVSSILSACAQLG-AISLGKWVHELVKSRNFESNIYVSTALIDMY 457 (784)
Q Consensus 380 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~-t~~~ll~a~~~~~-~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y 457 (784)
|+.+-......+..++|++++.+++.. .|+.. .++.--..+...+ .++++..+.+.+++.. +.+..+++--...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 333333444455566788888777764 44433 3344334444455 3666666666666543 33445555444444
Q ss_pred Hhc-C-CHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044131 458 AKC-G-NIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGL--------EALQLFSEMLHSGIRPSGVTFLSVLYACS 524 (784)
Q Consensus 458 ~k~-g-~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 524 (784)
.+. + ++++++++++.+.+ +|..+|+--.-.+.+.|.++ ++++.++++++.. .-|...|+.-.....
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 444 4 56666666666653 35556655444444444444 5666666665542 224444444444444
Q ss_pred ccCC-------HHHHHHHHHHhH
Q 044131 525 HAGL-------VREGDEIFQSMI 540 (784)
Q Consensus 525 ~~g~-------~~~a~~~~~~m~ 540 (784)
+.+. +++++++++.++
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI 235 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSI 235 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHH
T ss_pred hccccccchHHHHHHHHHHHHHH
Confidence 4443 344444444444
No 164
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.99 E-value=2.1e-05 Score=69.03 Aligned_cols=92 Identities=13% Similarity=0.035 Sum_probs=75.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcc-------hHHHH
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVG-------YHVLL 621 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~-------~~~~l 621 (784)
.+..+...+.+.|++++|++.+++. .+.| +..+|..+..++...|+++.|+..++++++++|+++. .|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4555677777788888888887765 2445 5678999999999999999999999999999987754 57778
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 044131 622 SNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 622 ~~~y~~~g~~~~a~~~~~~m~ 642 (784)
+++|...|++++|.+.++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal 110 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSL 110 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999987654
No 165
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.98 E-value=0.00061 Score=70.16 Aligned_cols=211 Identities=11% Similarity=0.038 Sum_probs=153.1
Q ss_pred hHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcC-CHHHHHHHHhhcC---CCCHHHHHHHHHHHHHc-C-CHHHHHHHH
Q 044131 428 ISLGKWVHELVKSRNFESNIYVSTALIDMYAKCG-NIVEARELFDLMS---HKSEVTWNTMISGYGLH-G-HGLEALQLF 501 (784)
Q Consensus 428 ~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g-~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~~~ 501 (784)
.++|.++.+.++..+ +.+..+++.--..+...| .+++++..++.+. .++..+|+--...+... + +++++++++
T Consensus 70 se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 70 SERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 456778888888765 456667777777777788 5999999999876 46788999988888777 7 899999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCC-------H
Q 044131 502 SEMLHSGIRPSGVTFLSVLYACSHAGLVR--------EGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQ-------L 565 (784)
Q Consensus 502 ~~m~~~g~~pd~~t~~~ll~a~~~~g~~~--------~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~-------~ 565 (784)
+++.+.. +-|...|..-.-...+.|..+ +++++++.+++. .| +...|+....++.+.|+ +
T Consensus 149 ~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~---dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 149 HGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV---DGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccccccchHHH
Confidence 9999753 335666665555555555555 899999999864 34 46678777888888876 7
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhcCC------CCCcch
Q 044131 566 EKALEFIKGL-AVEP-GPAVWGALLGACMIHKDT--------------------NLARVASEKLFELD------PENVGY 617 (784)
Q Consensus 566 ~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~--------------------~~a~~~~~~~~~l~------p~~~~~ 617 (784)
++++++++++ ...| |...|+-+-+.+...|+. ..-...+..+.... +..+-.
T Consensus 225 ~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 225 QDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 8999998776 3445 778999888888776654 22222222332222 355566
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 618 HVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 618 ~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...|+++|...|+.++|.++++.+.+
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 77899999999999999999999864
No 166
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=97.98 E-value=3e-05 Score=78.68 Aligned_cols=93 Identities=6% Similarity=-0.088 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 044131 347 SVLTALSTVYSRLNEMEAARKLFDESS---EKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACA 423 (784)
Q Consensus 347 ~~~~~Li~~y~~~g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~ 423 (784)
..+..+...|.+.|++++|...|+... ..+...|..+...|.+.|++++|+..|++..... +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344445555556666666666655432 2244555556666666666666666666555431 123344445555555
Q ss_pred hhCchHHHHHHHHHHHH
Q 044131 424 QLGAISLGKWVHELVKS 440 (784)
Q Consensus 424 ~~~~~~~a~~i~~~~~~ 440 (784)
..|++++|...+..+.+
T Consensus 84 ~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYS 100 (281)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555543
No 167
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.97 E-value=3.1e-05 Score=67.65 Aligned_cols=90 Identities=16% Similarity=0.070 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCC-CCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC---cchHHHHHHHH
Q 044131 554 CMVDILGRAGQLEKALEFIKGLA-VEPG-P---AVWGALLGACMIHKDTNLARVASEKLFELDPEN---VGYHVLLSNIY 625 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m~-~~p~-~---~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~---~~~~~~l~~~y 625 (784)
.+...+.+.|++++|.+.+++.. ..|+ . ..|..+..++...|+++.|...++++++..|++ +..+..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 34555666677777776666541 1222 2 366667777778888888888888888888887 66678888888
Q ss_pred HhcCChHHHHHHHHHHHh
Q 044131 626 SAERDYLQAATVRQVVKK 643 (784)
Q Consensus 626 ~~~g~~~~a~~~~~~m~~ 643 (784)
...|++++|.+.++...+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888888888888776654
No 168
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.96 E-value=5e-05 Score=83.03 Aligned_cols=160 Identities=12% Similarity=0.092 Sum_probs=107.5
Q ss_pred CCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 044131 461 GNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQ 537 (784)
Q Consensus 461 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~ 537 (784)
+++++|...|+.... .....|..+...|.+.|++++|+..|++.++. .|+...+ .-++..+ ..
T Consensus 248 ~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~-----------~~~~~~~-~~ 313 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL-----------SEKESKA-SE 313 (457)
T ss_dssp EEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC-----------CHHHHHH-HH
T ss_pred hhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC-----------ChHHHHH-HH
Confidence 344455555544332 24557888888888899999999999888873 2322100 0000000 00
Q ss_pred HhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 538 SMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 538 ~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
.. ....|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|+++.|...++++++++|++.
T Consensus 314 ~~--------~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~ 385 (457)
T 1kt0_A 314 SF--------LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK 385 (457)
T ss_dssp HH--------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred HH--------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence 00 1345667777777888888888777765 2344 567899999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHHHHH-HHHHH
Q 044131 616 GYHVLLSNIYSAERDYLQAATV-RQVVK 642 (784)
Q Consensus 616 ~~~~~l~~~y~~~g~~~~a~~~-~~~m~ 642 (784)
..+..++.++...|+++++.+- ++.|-
T Consensus 386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 386 AARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988753 44443
No 169
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.96 E-value=9e-06 Score=73.19 Aligned_cols=62 Identities=10% Similarity=-0.069 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcC-------CCCCcchH----HHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 582 AVWGALLGACMIHKDTNLARVASEKLFEL-------DPENVGYH----VLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 582 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~l-------~p~~~~~~----~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
..|..+..++...|++++|...+++++++ +|+++..| ..++.+|...|++++|...++...+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888888888888888888888888 88888888 8888899999999998888877643
No 170
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=97.93 E-value=3.3e-05 Score=68.35 Aligned_cols=99 Identities=15% Similarity=0.019 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhCC-CCC-CHHHHHHHH
Q 044131 512 SGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGLA-VEP-GPAVWGALL 588 (784)
Q Consensus 512 d~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p-~~~~~~~ll 588 (784)
+...+..+...+...|++++|..+|+...+. .|+ ...|..+..++...|++++|...+++.. ..| +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 3444555555555555555555555555432 232 4455556666666666666666665541 233 466788888
Q ss_pred HHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 589 GACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
.++...|+++.|...++++++++|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888998888888888877
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.92 E-value=5.5e-05 Score=65.82 Aligned_cols=94 Identities=16% Similarity=0.077 Sum_probs=75.1
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-------cchHHH
Q 044131 550 EHYACMVDILGRAGQLEKALEFIKGLA-V-EPGPAVWGALLGACMIHKDTNLARVASEKLFELDPEN-------VGYHVL 620 (784)
Q Consensus 550 ~~~~~lv~~l~r~g~~~eA~~~~~~m~-~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~-------~~~~~~ 620 (784)
..+..+...+...|++++|...+++.- . +.+..+|..+...+...|+++.|...+++++++.|++ +..+..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 345566667777777777777776652 2 3356678888888888999999999999999988776 778899
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 044131 621 LSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 621 l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++.+|...|++++|.+.++...+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHH
Confidence 99999999999999999988765
No 172
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=97.87 E-value=6.6e-05 Score=78.40 Aligned_cols=139 Identities=10% Similarity=-0.068 Sum_probs=89.8
Q ss_pred hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC--CCC----------------HHHHHHHHH
Q 044131 425 LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS--HKS----------------EVTWNTMIS 486 (784)
Q Consensus 425 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~--~~~----------------~~~~~~li~ 486 (784)
+.+++.|...+....+.. +.+...+..+...|.+.|++++|...|++.. .|+ ...|..+..
T Consensus 126 L~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 344455544444333221 2246678889999999999999999999875 232 467777788
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCH
Q 044131 487 GYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQL 565 (784)
Q Consensus 487 ~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~ 565 (784)
+|.+.|++++|+..|++.++.. +.+...+..+..++...|++++|...|+...+. .|+ ...+..+..++.+.|+.
T Consensus 205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---~P~~~~a~~~l~~~~~~~~~~ 280 (336)
T 1p5q_A 205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL---YPNNKAAKTQLAVCQQRIRRQ 280 (336)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHHHHH
Confidence 8888888888888888877742 234556666667777777777777777766532 333 33444444444444444
Q ss_pred HHH
Q 044131 566 EKA 568 (784)
Q Consensus 566 ~eA 568 (784)
++|
T Consensus 281 ~~a 283 (336)
T 1p5q_A 281 LAR 283 (336)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 173
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.86 E-value=2e-05 Score=70.92 Aligned_cols=112 Identities=13% Similarity=-0.042 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--------H-----HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRPS--------G-----VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFK 546 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd--------~-----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 546 (784)
.|......+.+.|++++|+..|++.++ +.|+ . ..|..+..++...|++++|+..|+..++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~--l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~----- 85 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAME--ISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH----- 85 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH--HHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----
Confidence 445555566667777777777777766 3333 1 1444444444445555555444444331
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHHh-CCCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHH
Q 044131 547 PLAEHYACMVDILGRAGQLEKALEFIKG-LAVEPGPA-VW----GALLGACMIHKDTNLARVASEKLFELDPENVGYHVL 620 (784)
Q Consensus 547 p~~~~~~~lv~~l~r~g~~~eA~~~~~~-m~~~p~~~-~~----~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~ 620 (784)
+|++ ..+.|+.. .| .....++...|++++|...|+++++++|++.+.+--
T Consensus 86 ------------------------l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 86 ------------------------YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp ------------------------HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred ------------------------hhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 1111 23478654 88 999999999999999999999999999999887655
Q ss_pred HH
Q 044131 621 LS 622 (784)
Q Consensus 621 l~ 622 (784)
+.
T Consensus 142 ~~ 143 (159)
T 2hr2_A 142 KE 143 (159)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 174
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.86 E-value=1.2e-05 Score=69.43 Aligned_cols=83 Identities=11% Similarity=0.041 Sum_probs=60.6
Q ss_pred hcCCHHHHHHHHHhC-CC---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 044131 561 RAGQLEKALEFIKGL-AV---EPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAA 635 (784)
Q Consensus 561 r~g~~~eA~~~~~~m-~~---~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~ 635 (784)
..|++++|+..+++. .. .|+ ..+|..+..++...|+++.|...++++++++|+++..+..++.+|...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 356677777777665 23 243 4477788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHh
Q 044131 636 TVRQVVKK 643 (784)
Q Consensus 636 ~~~~~m~~ 643 (784)
..++...+
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776544
No 175
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=97.84 E-value=0.00015 Score=69.02 Aligned_cols=62 Identities=16% Similarity=-0.069 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 582 AVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 582 ~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.+|..+..++...|+++.|...++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 68888999999999999999999999999999999999999999999999999999987764
No 176
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.84 E-value=7.4e-05 Score=81.62 Aligned_cols=123 Identities=10% Similarity=0.042 Sum_probs=82.6
Q ss_pred ccCCHHHHHHHHHHhHHhcC--CCCC----cchHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHH
Q 044131 525 HAGLVREGDEIFQSMIHDHG--FKPL----AEHYACMVDILGRAGQLEKALEFIKGL---------AVEPGPA-VWGALL 588 (784)
Q Consensus 525 ~~g~~~~a~~~~~~m~~~~~--~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll 588 (784)
..|++++|..++++.++... +.|+ ..+++.|..+|...|++++|+.++++. +-.|+.. +++.|.
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 44555555555544433211 1121 345566666666666666666665543 2344433 788888
Q ss_pred HHHHhcCCHHHHHHHHHHHhc-----CCCCCcch---HHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 044131 589 GACMIHKDTNLARVASEKLFE-----LDPENVGY---HVLLSNIYSAERDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~~-----l~p~~~~~---~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 647 (784)
..|...|++++|+..++++++ +.|++|.+ ..+|...+...|++++|..++..++++-.+
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999888886 57777654 457788899999999999999999875533
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.82 E-value=4.8e-05 Score=80.50 Aligned_cols=138 Identities=9% Similarity=0.024 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cchHHHHH
Q 044131 478 EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AEHYACMV 556 (784)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv 556 (784)
...|..+...|.+.|++++|++.|++.++. .|+. ...-..++ .. .+.|. ...|..+.
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~-------~~---~~~~~~~~~~~nla 280 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDAD-------GA---KLQPVALSCVLNIG 280 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHH-------HG---GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHH-------HH---HHHHHHHHHHHHHH
Confidence 446777778888888888888888887752 1110 00000111 10 12232 56778888
Q ss_pred HHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 044131 557 DILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQA 634 (784)
Q Consensus 557 ~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a 634 (784)
.+|.+.|++++|++.+++. ...| +...|..+..++...|++++|...++++++++|+++..+..++.++...++.+++
T Consensus 281 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 281 ACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999998876 4556 5668999999999999999999999999999999999999999999999888877
Q ss_pred HHH
Q 044131 635 ATV 637 (784)
Q Consensus 635 ~~~ 637 (784)
.+.
T Consensus 361 ~k~ 363 (370)
T 1ihg_A 361 EKA 363 (370)
T ss_dssp HHC
T ss_pred HHH
Confidence 653
No 178
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=97.81 E-value=0.00011 Score=61.86 Aligned_cols=98 Identities=15% Similarity=0.069 Sum_probs=63.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHH
Q 044131 516 FLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGL-AVEP---GPAVWGALLGAC 591 (784)
Q Consensus 516 ~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p---~~~~~~~ll~a~ 591 (784)
+..+...+...|++++|..+|+...+.. +.+...+..+...+.+.|++++|.+.+++. ...| +..+|..+...+
T Consensus 9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 9 YYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL 86 (112)
T ss_dssp GGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence 4444455555566666666666555321 122445556666666667777777666654 2333 466788888888
Q ss_pred Hhc-CCHHHHHHHHHHHhcCCCCCc
Q 044131 592 MIH-KDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 592 ~~~-g~~~~a~~~~~~~~~l~p~~~ 615 (784)
... |+.+.|...++++++..|+++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHhCCHHHHHHHHHHHhhcccCCC
Confidence 888 888888888888888888764
No 179
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.0001 Score=79.70 Aligned_cols=162 Identities=8% Similarity=-0.085 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHccCCHHHHHHHHHHhHHhc---CCCCC-cc
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSG-IRPSGV----TFLSVLYACSHAGLVREGDEIFQSMIHDH---GFKPL-AE 550 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~pd~~----t~~~ll~a~~~~g~~~~a~~~~~~m~~~~---~~~p~-~~ 550 (784)
++..+...|...|++++|.+++.++...- ..++.. ....+-..+...|..+++.++++...... +..+. ..
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 35667777777788888887777765421 112221 12222233445677888888777665321 22222 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---CC----c
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGLA-------VEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDP---EN----V 615 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m~-------~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p---~~----~ 615 (784)
.+..+...|...|++++|..++++.. -+|. ..++..++..|...||++.|..++++++...| +. .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 66778888888888888888877541 1232 33778888889999999999999988876532 22 2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 616 GYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 616 ~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
..+..++.+|...|+|++|.+.+...
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45667788888899999998876544
No 180
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.80 E-value=0.0026 Score=65.16 Aligned_cols=210 Identities=12% Similarity=0.027 Sum_probs=146.0
Q ss_pred HHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCC----------HHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC--
Q 044131 429 SLGKWVHELVKSRNFESNIYVSTALIDMYAKCGN----------IVEARELFDLMS---HKSEVTWNTMISGYGLHGH-- 493 (784)
Q Consensus 429 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~----------~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~-- 493 (784)
++|....+.++..+ +.+..+++.--..+...|. +++++..++.+. .++..+|+--.-.+...|+
T Consensus 47 ~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~ 125 (331)
T 3dss_A 47 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 125 (331)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCccc
Confidence 36777777777654 3344455543333333332 678888888776 4688899988888888884
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhc---------
Q 044131 494 GLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGL-VREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRA--------- 562 (784)
Q Consensus 494 ~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~-~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~--------- 562 (784)
+++++++++++.+.. +-|...|..-...+.+.|. +++++++++.+++. .| +...|+....++.+.
T Consensus 126 ~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~---~p~N~SAW~~R~~ll~~l~~~~~~~~~ 201 (331)
T 3dss_A 126 WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR---NFSNYSSWHYRSCLLPQLHPQPDSGPQ 201 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHHSCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhhhccccccc
Confidence 899999999999864 4466677776667777887 69999999999864 34 456666666666554
Q ss_pred -----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 044131 563 -----GQLEKALEFIKGL-AVEP-GPAVWGALLGACMIH-----------KDTNLARVASEKLFELDPENVGYHVLLSNI 624 (784)
Q Consensus 563 -----g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~-----------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 624 (784)
+.++++++++++. ...| |..+|+-+-+.+... +-++.+...++++++++|++.-.+..++.+
T Consensus 202 ~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~ 281 (331)
T 3dss_A 202 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 281 (331)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHH
Confidence 5688999998876 2445 778998777776665 457899999999999999985444333322
Q ss_pred H---HhcCChHHHHHHHHHHHh
Q 044131 625 Y---SAERDYLQAATVRQVVKK 643 (784)
Q Consensus 625 y---~~~g~~~~a~~~~~~m~~ 643 (784)
. ...|..+++...+..+.+
T Consensus 282 ~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 282 MRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHCTTTTHHHHHHHHHHHHH
T ss_pred HHhhcccccHHHHHHHHHHHHH
Confidence 2 135666666666666654
No 181
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=97.78 E-value=0.00015 Score=62.98 Aligned_cols=115 Identities=6% Similarity=-0.114 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDI 558 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~ 558 (784)
..|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|..+|+...+.. |+
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~---------- 70 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RE---------- 70 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HH----------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cc----------
Confidence 355556666666666666666666666532 2234445555555555566666655555554321 10
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 559 LGRAGQLEKALEFIKGLAVEPG----PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 559 l~r~g~~~eA~~~~~~m~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
..++ ..+|..+..++...|+++.|...+++++++.| ++.....+..++.
T Consensus 71 ------------------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~ 123 (131)
T 1elr_A 71 ------------------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK 123 (131)
T ss_dssp ------------------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred ------------------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 0122 44677777788888888888888888888887 4656666655543
No 182
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.77 E-value=0.00016 Score=63.01 Aligned_cols=102 Identities=11% Similarity=0.042 Sum_probs=64.0
Q ss_pred HHHHHccCCHHHHHHHHHHhHHhcCCCCCc----chHHHHHHHHHhcCCHHHHHHHHHhCC-CCCC----HHHHHHHHHH
Q 044131 520 LYACSHAGLVREGDEIFQSMIHDHGFKPLA----EHYACMVDILGRAGQLEKALEFIKGLA-VEPG----PAVWGALLGA 590 (784)
Q Consensus 520 l~a~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~----~~~~~~ll~a 590 (784)
...+...|++++|...|+...+. .|+. ..+..+...+.+.|++++|.+.+++.- ..|+ +.++..+..+
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 33444555555555555555533 2221 345555666666666666666665541 2232 4567777788
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 044131 591 CMIHKDTNLARVASEKLFELDPENVGYHVLLSNI 624 (784)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 624 (784)
+...|+.+.|...++++++..|+++........+
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l 119 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL 119 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 8888999999999999999999877655544443
No 183
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.77 E-value=6.8e-05 Score=65.00 Aligned_cols=96 Identities=14% Similarity=0.102 Sum_probs=63.6
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhHHhcCCCC-CcchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 044131 517 LSVLYACSHAGLVREGDEIFQSMIHDHGFKP-LAEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMI 593 (784)
Q Consensus 517 ~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~ 593 (784)
..+...+...|++++|...|+..++. .| +...|..+..++.+.|++++|+..+++. .+.| +...|..|..++..
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34445566667777777777666643 34 3566666777777777777777777665 2445 45688888888888
Q ss_pred cCCHHHHHHHHHHHhcCCCCCc
Q 044131 594 HKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 594 ~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
.|+.++|...++++++++|+++
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 8999999999999999888754
No 184
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.77 E-value=0.00012 Score=66.34 Aligned_cols=135 Identities=13% Similarity=0.013 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCH----HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIR-PSG----VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYA 553 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-pd~----~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 553 (784)
.++..+...|...|++++|+..|++..+.... ++. .++..+...+...|++++|.++++...+...
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~--------- 80 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR--------- 80 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------
Confidence 35666666777777777777777776652110 111 2344444555555555555555555432110
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC------CCcchHHHHHHHHH
Q 044131 554 CMVDILGRAGQLEKALEFIKGLAVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDP------ENVGYHVLLSNIYS 626 (784)
Q Consensus 554 ~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p------~~~~~~~~l~~~y~ 626 (784)
..+..+ ...++..+...+...|+++.|...+++++++.+ ..+..+..++.+|.
T Consensus 81 --------------------~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 140 (164)
T 3ro3_A 81 --------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 140 (164)
T ss_dssp --------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------------------HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHH
Confidence 000000 123556666667777777777777777665422 22346778888888
Q ss_pred hcCChHHHHHHHHHHH
Q 044131 627 AERDYLQAATVRQVVK 642 (784)
Q Consensus 627 ~~g~~~~a~~~~~~m~ 642 (784)
..|++++|.+.++...
T Consensus 141 ~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 141 ALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHH
Confidence 8899888888876654
No 185
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.76 E-value=0.00015 Score=63.45 Aligned_cols=59 Identities=5% Similarity=-0.086 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHSGIRP-SGVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
+|..+...|.+.|++++|++.|++.++. .| +...|..+..++...|++++|++.|+..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 4555666666667777777777766663 33 34455566666666666666666666655
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.73 E-value=0.00054 Score=76.60 Aligned_cols=169 Identities=11% Similarity=-0.037 Sum_probs=133.0
Q ss_pred CCHHHHHHHHhhcC---CCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 044131 461 GNIVEARELFDLMS---HKSEVTWNTMISGYGLHGH----------GLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAG 527 (784)
Q Consensus 461 g~~~~A~~~f~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g 527 (784)
..-++|.+.++.+. ..+...|+.--..+...|+ ++++++.++++.+.. +-+..+|..-.-++.+.|
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 34466777777765 3456678877777777776 899999999998853 335667777777778888
Q ss_pred --CHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-------
Q 044131 528 --LVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAG-QLEKALEFIKGL-AVEP-GPAVWGALLGACMIH------- 594 (784)
Q Consensus 528 --~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g-~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~------- 594 (784)
+++++.++++.+.+. .|. ...|+.-..++.+.| .++++.++++++ ...| |...|+....++...
T Consensus 122 ~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence 779999999999854 444 666777777888888 899999999887 3455 677998888877663
Q ss_pred -------CCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 044131 595 -------KDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQ 633 (784)
Q Consensus 595 -------g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 633 (784)
+.++++.+.++++++++|++.++|..+..++...++.++
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 457899999999999999999999999999999998655
No 187
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.72 E-value=7.1e-05 Score=68.64 Aligned_cols=123 Identities=13% Similarity=0.018 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCC-cc
Q 044131 478 EVTWNTMISGYGLHGHGLEALQLFSEMLHSG------IRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPL-AE 550 (784)
Q Consensus 478 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~-~~ 550 (784)
...|......+.+.|++++|+..|++.+..- -.|+...+ .. +.|. ..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~--------------------~~------~~~~~~~ 64 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEW--------------------VE------LDRKNIP 64 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHH--------------------HH------HHHTHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHH--------------------HH------HHHHHHH
Confidence 3456666667777777777777777766520 01110000 00 0122 45
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc-chHHHHHHHHH
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENV-GYHVLLSNIYS 626 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~-~~~~~l~~~y~ 626 (784)
.|..+..+|.+.|++++|...+++. .+.| ++..|..+..++...|+++.|...++++++++|+++ .....|..+..
T Consensus 65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~ 143 (162)
T 3rkv_A 65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE 143 (162)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 6777778888888888888888765 2445 566899999999999999999999999999999988 55556655443
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.72 E-value=5.7e-05 Score=78.92 Aligned_cols=146 Identities=11% Similarity=-0.024 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHH
Q 044131 479 VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDI 558 (784)
Q Consensus 479 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~ 558 (784)
..|..+...+.+.|++++|+..|++... ..|+... +...|..+++...+. ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHHH
Confidence 4566677777788888888888888776 3455432 223333344332221 1256777888
Q ss_pred HHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHH-HhcCChHHHH
Q 044131 559 LGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIY-SAERDYLQAA 635 (784)
Q Consensus 559 l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y-~~~g~~~~a~ 635 (784)
|.+.|++++|...+++. ...| +...|..+..++...|+++.|+..++++++++|+++..+..|..+. ...+..+.+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888765 2344 5668888888888899999999999999999998888888888884 4456677777
Q ss_pred HHHHHHHhC
Q 044131 636 TVRQVVKKR 644 (784)
Q Consensus 636 ~~~~~m~~~ 644 (784)
++++.|-+.
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 777777543
No 189
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.71 E-value=4.7e-05 Score=79.57 Aligned_cols=112 Identities=8% Similarity=-0.104 Sum_probs=90.0
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIH 594 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~ 594 (784)
.+..+...+...|++++|...|+..++. .|+.. .+...|+.+++...+.. ..|..+..++...
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~~-------~~~~nla~~~~~~ 243 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVKN-------PCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHHT-------HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHHH-------HHHHHHHHHHHHc
Confidence 3555667788899999999999988743 34322 23345556666554432 3788899999999
Q ss_pred CCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 595 KDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 595 g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|+++.|...++++++++|+++..|..++.+|...|++++|.+.++...+
T Consensus 244 g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp TCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987654
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.69 E-value=3.5e-05 Score=66.30 Aligned_cols=99 Identities=13% Similarity=0.005 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 044131 527 GLVREGDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVA 603 (784)
Q Consensus 527 g~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~ 603 (784)
|++++|...|++.++...-.|+ ...+..+..+|.+.|++++|.+.+++. ...| +..+|..+..++...|++++|...
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555555554421000122 445555666666666666666666654 2233 456777788888888888888888
Q ss_pred HHHHhcCCCCCcchHHHHHHHH
Q 044131 604 SEKLFELDPENVGYHVLLSNIY 625 (784)
Q Consensus 604 ~~~~~~l~p~~~~~~~~l~~~y 625 (784)
++++++..|+++........+.
T Consensus 84 ~~~al~~~p~~~~~~~~~~ai~ 105 (117)
T 3k9i_A 84 LLKIIAETSDDETIQSYKQAIL 105 (117)
T ss_dssp HHHHHHHHCCCHHHHHTHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHH
Confidence 8888888888876554433333
No 191
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.68 E-value=0.00016 Score=65.39 Aligned_cols=94 Identities=10% Similarity=-0.027 Sum_probs=70.6
Q ss_pred hhhHhHHHHHHHhcCCHHHHHHHHhhcCC-----CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----
Q 044131 447 IYVSTALIDMYAKCGNIVEARELFDLMSH-----KS----EVTWNTMISGYGLHGHGLEALQLFSEMLHSGI-RPS---- 512 (784)
Q Consensus 447 ~~~~~~Li~~y~k~g~~~~A~~~f~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~pd---- 512 (784)
..++..+...|...|++++|...|++..+ .+ ..++..+...|...|++++|++.|++..+... .++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45678888999999999999999987652 22 24788889999999999999999999876311 111
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 513 GVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
...+..+...+...|++++|.++++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 2345566667777788888877777664
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.65 E-value=7.5e-05 Score=63.04 Aligned_cols=89 Identities=12% Similarity=0.023 Sum_probs=71.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC------cchHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPEN------VGYHVL 620 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~------~~~~~~ 620 (784)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|++ ...+..
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 445666777788888888888888765 2344 57789999999999999999999999999999998 777888
Q ss_pred HHHHHHhcCChHHHHHH
Q 044131 621 LSNIYSAERDYLQAATV 637 (784)
Q Consensus 621 l~~~y~~~g~~~~a~~~ 637 (784)
++.++...|++++|.+.
T Consensus 84 ~~~~~~~~~~~~~a~~~ 100 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVE 100 (111)
T ss_dssp HHHHHHHHHCCCCCSSS
T ss_pred HHHHHHHHHhHhhhHhH
Confidence 88888888877766543
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.60 E-value=0.00021 Score=59.36 Aligned_cols=64 Identities=23% Similarity=0.191 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 580 GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 580 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++.+|..+..++...|+++.|+..++++++++|+++..|..++.+|...|++++|.+.++...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999999999999999999999999999999887654
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.59 E-value=0.00026 Score=74.76 Aligned_cols=112 Identities=10% Similarity=0.007 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 044131 513 GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEP-GPAVWGALLGAC 591 (784)
Q Consensus 513 ~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p-~~~~~~~ll~a~ 591 (784)
...+..+...+...|++++|.+.|++.++.. |.. ...-..+++.+ ..| +..+|..+..++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGAK------LQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHHH------HHHHHHHHHHHHHHHH
Confidence 3456677777888888888888888776421 100 00011111111 233 355889999999
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 592 MIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 592 ~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...|++++|+..++++++++|+++..|..++.+|...|++++|.+.++...+
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999987765
No 195
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.57 E-value=0.00048 Score=75.19 Aligned_cols=112 Identities=9% Similarity=-0.083 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 044131 514 VTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMI 593 (784)
Q Consensus 514 ~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~ 593 (784)
..+..+...+...|++++|...|++.++.. |+...+ .-++..+. +. -...+|..+..++..
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~-----------~~~~~~~~-~~----~~~~~~~nla~~~~~ 329 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL---EMEYGL-----------SEKESKAS-ES----FLLAAFLNLAMCYLK 329 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---TTCCSC-----------CHHHHHHH-HH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccC-----------ChHHHHHH-HH----HHHHHHHHHHHHHHH
Confidence 345566666677777777777777665432 221100 00111100 00 014688899999999
Q ss_pred cCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 044131 594 HKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKR 644 (784)
Q Consensus 594 ~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~ 644 (784)
.|+++.|...++++++++|+++..|..++.+|...|++++|...++...+.
T Consensus 330 ~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988763
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.57 E-value=0.00094 Score=72.07 Aligned_cols=158 Identities=12% Similarity=0.000 Sum_probs=118.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC----------------HHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCc
Q 044131 486 SGYGLHGHGLEALQLFSEMLHSGIRPS----------------GVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLA 549 (784)
Q Consensus 486 ~~~~~~g~~~~A~~~~~~m~~~g~~pd----------------~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~ 549 (784)
..+.+.|++++|++.|.++.+...... ...+..+...|...|++++|.+++..+.+..+-.++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345677999999999999887532211 1246788899999999999999999987654433332
Q ss_pred ----chHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC------C
Q 044131 550 ----EHYACMVDILGRAGQLEKALEFIKGL-------AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFEL------D 611 (784)
Q Consensus 550 ----~~~~~lv~~l~r~g~~~eA~~~~~~m-------~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l------~ 611 (784)
...+.+...+...|++++|.++++.. ...+. ..++..|...+...|+++.|...+++++.. .
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 23344455566788999999888654 23333 457888999999999999999999988753 2
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 612 PENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 612 p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|.....|..++.+|...|+|++|...++....
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 33456888999999999999999999876653
No 197
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.54 E-value=0.00027 Score=56.95 Aligned_cols=81 Identities=23% Similarity=0.316 Sum_probs=63.9
Q ss_pred cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 044131 549 AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYS 626 (784)
Q Consensus 549 ~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~ 626 (784)
...+..+...+.+.|++++|.+.+++. ...| +..+|..+..++...|+++.|...++++++++|+++..+..++.+|.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 345566667777777777777777665 2233 56688888889999999999999999999999999999999998887
Q ss_pred hcC
Q 044131 627 AER 629 (784)
Q Consensus 627 ~~g 629 (784)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.44 E-value=0.00027 Score=77.11 Aligned_cols=115 Identities=10% Similarity=-0.019 Sum_probs=88.3
Q ss_pred HHHhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCc---chHH
Q 044131 558 ILGRAGQLEKALEFIKGL---------AVEPGP-AVWGALLGACMIHKDTNLARVASEKLFE-----LDPENV---GYHV 619 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m---------~~~p~~-~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~~~ 619 (784)
.+...|++++|+.++++. +-.|+. .+++.|..+|...|++++|+..++++++ +.|++| ..+.
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456889999999998764 123433 3889999999999999999999999886 456655 4678
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHH
Q 044131 620 LLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMRE 690 (784)
Q Consensus 620 ~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~ 690 (784)
.|+.+|...|++++|..++++..+.-.+ +-| ..||.+.++..+|.....+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLV-----------------THG-PSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHH-----------------HhC-CCChHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998776541111 112 4799999999888877766554
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.42 E-value=0.00032 Score=59.80 Aligned_cols=77 Identities=13% Similarity=0.019 Sum_probs=64.1
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 567 KALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 567 eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
+|.+.+++. ...| +...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|...++...+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555443 3344 5678889999999999999999999999999999999999999999999999999999887654
No 200
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.40 E-value=0.00064 Score=55.42 Aligned_cols=69 Identities=13% Similarity=0.049 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044131 578 EPGPAVWGALLGACMIHKD---TNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 578 ~p~~~~~~~ll~a~~~~g~---~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 646 (784)
++|+..|..+..+....++ .+.|...++++++++|+++....++++++...|++++|...++.+.+...
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4577788888888876655 79999999999999999999999999999999999999999999987543
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.34 E-value=0.00038 Score=74.84 Aligned_cols=113 Identities=14% Similarity=0.118 Sum_probs=77.2
Q ss_pred HHhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCc---chHHH
Q 044131 559 LGRAGQLEKALEFIKGL------AVEPG----PAVWGALLGACMIHKDTNLARVASEKLFE-----LDPENV---GYHVL 620 (784)
Q Consensus 559 l~r~g~~~eA~~~~~~m------~~~p~----~~~~~~ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~~~~ 620 (784)
+.+.|++++|++++++. .+.|+ ..+++.|..+|...|++++|+..++++++ +.|++| ..+..
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34455556665555433 02222 23677777888888888888888887775 345554 46778
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 044131 621 LSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMR 689 (784)
Q Consensus 621 l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~ 689 (784)
|+.+|...|++++|..++++..+--.+ .-| ..||...+++..|++...+|+
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i~~~-----------------~lG-~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDIMRV-----------------THG-REHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH-----------------HTC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHH-----------------hcC-CCChHHHHHHHHHHHHHHHHh
Confidence 999999999999999988766541110 112 479999999999988887775
No 202
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.21 E-value=0.00021 Score=64.07 Aligned_cols=84 Identities=14% Similarity=0.068 Sum_probs=63.4
Q ss_pred HhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 044131 560 GRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKD----------TNLARVASEKLFELDPENVGYHVLLSNIYSA 627 (784)
Q Consensus 560 ~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~----------~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~ 627 (784)
.|.+++++|.+.+++. ...| ++..|..+..++...++ +++|+..++++++++|+++..|..|+++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3445566666666554 2334 45566666666555554 5699999999999999999999999999998
Q ss_pred cC-----------ChHHHHHHHHHHHh
Q 044131 628 ER-----------DYLQAATVRQVVKK 643 (784)
Q Consensus 628 ~g-----------~~~~a~~~~~~m~~ 643 (784)
.| ++++|.+.+++..+
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHH
Confidence 75 89999999988765
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.15 E-value=0.001 Score=55.79 Aligned_cols=65 Identities=12% Similarity=-0.098 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 579 PGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 579 p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 35668889999999999999999999999999999999999999999999999999999988765
No 204
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.13 E-value=0.00042 Score=74.33 Aligned_cols=82 Identities=15% Similarity=0.171 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccE
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFE-----LDPENV---GYHVLLSNIYSAERDYLQAATVRQVVKKRKLAKAPGCTL 654 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~~---~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~k~~g~s~ 654 (784)
+++.|..+|...|++++|+..++++++ +.|++| ..|..|+.+|...|++++|..++++..+--.+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~------- 414 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEV------- 414 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-------
Confidence 677777777777888777777777775 345544 46778888999999999999988765541111
Q ss_pred EEECCEEEEEEeCCCCCcchHHHHHHHH
Q 044131 655 IEVGGTPHVFTSGDQLHPQSTAIYAMLE 682 (784)
Q Consensus 655 i~~~~~~~~f~~~d~~h~~~~~i~~~l~ 682 (784)
+-| ..||.+.+++..|+
T Consensus 415 ----------~lG-~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 415 ----------AHG-KDHPYISEIKQEIE 431 (433)
T ss_dssp ----------HTC-TTCHHHHHHHHHHH
T ss_pred ----------HcC-CCChHHHHHHHHHh
Confidence 112 47898888777664
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.10 E-value=0.00018 Score=64.59 Aligned_cols=105 Identities=10% Similarity=-0.050 Sum_probs=59.7
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 044131 489 GLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKA 568 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA 568 (784)
.+.+++++|++.+++..+.. +.+...+..+..++...|.++.+.... +.+++|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al--------------------------~~~~eA 65 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAK--------------------------QMIQEA 65 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------------HHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhH--------------------------hHHHHH
Confidence 34555666666666666632 224445555555555554432111100 013355
Q ss_pred HHHHHhC-CCCCC-HHHHHHHHHHHHhc-----------CCHHHHHHHHHHHhcCCCCCcchHHH
Q 044131 569 LEFIKGL-AVEPG-PAVWGALLGACMIH-----------KDTNLARVASEKLFELDPENVGYHVL 620 (784)
Q Consensus 569 ~~~~~~m-~~~p~-~~~~~~ll~a~~~~-----------g~~~~a~~~~~~~~~l~p~~~~~~~~ 620 (784)
+..+++. .+.|+ ..+|..|..++... |++++|...++++++++|++..+...
T Consensus 66 i~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 66 ITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 5555443 23443 34566666666554 58999999999999999998644433
No 206
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.98 E-value=0.0038 Score=49.95 Aligned_cols=63 Identities=29% Similarity=0.273 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 581 PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 581 ~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...|..+...+...|+++.|...++++++++|+++..+..++.+|...|++++|.+.++...+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 457888889999999999999999999999999999999999999999999999999887765
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.91 E-value=0.0029 Score=56.00 Aligned_cols=110 Identities=12% Similarity=-0.046 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHh----cCCHHH
Q 044131 492 GHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGR----AGQLEK 567 (784)
Q Consensus 492 g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r----~g~~~e 567 (784)
++.++|++.|++..+.| .|+.. +...+...+.+++|.++|++..+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 45677777777777766 33333 445555566677777777766532 234445555555554 455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcC
Q 044131 568 ALEFIKGLAVEPGPAVWGALLGACMI----HKDTNLARVASEKLFEL 610 (784)
Q Consensus 568 A~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~~~~~~~~l 610 (784)
|.+++++..-.-++..+..|...+.. .+|.++|...++++.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 55555544222334444444444444 44555555555555444
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=96.88 E-value=0.0014 Score=55.73 Aligned_cols=80 Identities=16% Similarity=0.089 Sum_probs=50.9
Q ss_pred HHHHHHHhHHhcCCCCC-cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 044131 532 GDEIFQSMIHDHGFKPL-AEHYACMVDILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLF 608 (784)
Q Consensus 532 a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~ 608 (784)
+.+.|+... ...|+ ...+..+...|.+.|++++|...+++. ...| +...|..+..++...|+.+.|...+++++
T Consensus 4 a~~~~~~al---~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAML---AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHH---TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455444 22333 455556666666666666666666554 2233 45577778788888888888888888888
Q ss_pred cCCCCC
Q 044131 609 ELDPEN 614 (784)
Q Consensus 609 ~l~p~~ 614 (784)
++.|++
T Consensus 81 ~~~~~~ 86 (115)
T 2kat_A 81 AAAQSR 86 (115)
T ss_dssp HHHHHH
T ss_pred Hhcccc
Confidence 877653
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.88 E-value=0.0036 Score=67.03 Aligned_cols=70 Identities=13% Similarity=0.040 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCc
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGL---------AVEPGPA-VWGALLGACMIHKDTNLARVASEKLFE-----LDPENV 615 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~~ 615 (784)
+++.|..+|...|++++|+.++++. +..|+.. +++.|...|...|++++|+..++++++ +.|++|
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp 421 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHP 421 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence 3444444444444444444444332 2344433 778888888888888888888888876 578877
Q ss_pred chHHH
Q 044131 616 GYHVL 620 (784)
Q Consensus 616 ~~~~~ 620 (784)
.+-.+
T Consensus 422 ~~~~l 426 (433)
T 3qww_A 422 YISEI 426 (433)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 210
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.84 E-value=0.0086 Score=52.85 Aligned_cols=112 Identities=10% Similarity=-0.052 Sum_probs=93.8
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 044131 527 GLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMI----HKDTNLARV 602 (784)
Q Consensus 527 g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~----~g~~~~a~~ 602 (784)
++.++|.++|++..+. | .|+ .. |..+|...+..++|.+++++.--.-++..+..|...+.. .+|.++|..
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4678999999998754 4 233 33 788888888999999999987545678888889888887 899999999
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 044131 603 ASEKLFELDPENVGYHVLLSNIYSA----ERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 603 ~~~~~~~l~p~~~~~~~~l~~~y~~----~g~~~~a~~~~~~m~~~~~ 646 (784)
.++++.+. .++..+..|+.+|.. .+++++|.+.+++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999887 567899999999999 8999999999998887664
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.76 E-value=0.021 Score=58.62 Aligned_cols=137 Identities=13% Similarity=0.038 Sum_probs=60.1
Q ss_pred CCHHHHHHHHHHHHH--cCC---HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHc----cCC----HHHHHHHHHHhHH
Q 044131 476 KSEVTWNTMISGYGL--HGH---GLEALQLFSEMLHSGIRPSGV-TFLSVLYACSH----AGL----VREGDEIFQSMIH 541 (784)
Q Consensus 476 ~~~~~~~~li~~~~~--~g~---~~~A~~~~~~m~~~g~~pd~~-t~~~ll~a~~~----~g~----~~~a~~~~~~m~~ 541 (784)
.+..+|...+.+... .+. ..+|+.+|++.++ ..|+.. .+..+..++.. .+. .......++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 355566666655432 232 4678889998888 467643 33333333320 000 0000011111000
Q ss_pred hcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 542 DHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLA-VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 542 ~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
......+...|..+.-.+...|++++|...++++. +.|+...|..+...+...|+.++|...+++++.++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 00112223344444443444455555555554442 33444444444444445555555555555555555543
No 212
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.73 E-value=0.0081 Score=64.39 Aligned_cols=72 Identities=17% Similarity=0.025 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhC---------CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCc
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGL---------AVEPGPA-VWGALLGACMIHKDTNLARVASEKLFE-----LDPENV 615 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m---------~~~p~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~-----l~p~~~ 615 (784)
+++.+..+|...|++++|+.++++. +..|+.. +++.|...+...|++++|+..++++++ +.|++|
T Consensus 331 ~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 331 VLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444455555555555555554433 2344433 778888888888888888888888876 578887
Q ss_pred chHHHHH
Q 044131 616 GYHVLLS 622 (784)
Q Consensus 616 ~~~~~l~ 622 (784)
.+-..+.
T Consensus 411 ~~~~~~~ 417 (429)
T 3qwp_A 411 LIEDLIL 417 (429)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 213
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=96.67 E-value=0.021 Score=63.67 Aligned_cols=146 Identities=14% Similarity=0.069 Sum_probs=116.1
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHccCC----------HHHHHHHHHHhHHhcCCCCC-cchHHHHHHH
Q 044131 491 HGHGLEALQLFSEMLHSGIRPSGVT-FLSVLYACSHAGL----------VREGDEIFQSMIHDHGFKPL-AEHYACMVDI 558 (784)
Q Consensus 491 ~g~~~~A~~~~~~m~~~g~~pd~~t-~~~ll~a~~~~g~----------~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~ 558 (784)
....++|++.++++.+ +.|+..| |+.--.++.+.|. +++++++++.+.+. .|. ...|.--..+
T Consensus 42 ~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 42 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHRCWL 116 (567)
T ss_dssp TCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHH
Confidence 3446789999999998 5676554 5544445555566 89999999999864 454 5677777778
Q ss_pred HHhcC--CHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-----
Q 044131 559 LGRAG--QLEKALEFIKGLA-VEP-GPAVWGALLGACMIHK-DTNLARVASEKLFELDPENVGYHVLLSNIYSAE----- 628 (784)
Q Consensus 559 l~r~g--~~~eA~~~~~~m~-~~p-~~~~~~~ll~a~~~~g-~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~----- 628 (784)
+.+.| ++++|.++++++- ..| +..+|+.-..+....| ..+.+...++++++.+|+|.++|...+.++...
T Consensus 117 l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCC
T ss_pred HHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccc
Confidence 88899 7799999999883 444 6779999999999989 899999999999999999999999999998874
Q ss_pred ---------CChHHHHHHHHHH
Q 044131 629 ---------RDYLQAATVRQVV 641 (784)
Q Consensus 629 ---------g~~~~a~~~~~~m 641 (784)
++++++.+..+..
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~a 218 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNA 218 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHH
Confidence 5567777766544
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.60 E-value=0.076 Score=62.20 Aligned_cols=102 Identities=16% Similarity=0.162 Sum_probs=71.4
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHH
Q 044131 354 TVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKW 433 (784)
Q Consensus 354 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 433 (784)
..+..+|+++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...++.+....
T Consensus 660 ~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 660 ELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred ehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 34567899999999887764 567899999999999999999999998753 3344444555666666666
Q ss_pred HHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhh
Q 044131 434 VHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDL 472 (784)
Q Consensus 434 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~ 472 (784)
+-+.+...| -++.-...|.++|++++|.+++.+
T Consensus 729 ~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 729 LAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHHH
Confidence 655555544 234445557777777777776554
No 215
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.51 E-value=0.0081 Score=49.47 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhH
Q 044131 477 SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMI 540 (784)
Q Consensus 477 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~ 540 (784)
+...|..+...|.+.|++++|+..|++..+.. +.+...|..+..++...|++++|.+.|++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44566666666666666666666666666632 2234455666666666666666666666554
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.42 E-value=0.01 Score=48.44 Aligned_cols=64 Identities=22% Similarity=0.279 Sum_probs=50.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchH
Q 044131 555 MVDILGRAGQLEKALEFIKGL-AVEP-GPA-VWGALLGACMIHKDTNLARVASEKLFELDPENVGYH 618 (784)
Q Consensus 555 lv~~l~r~g~~~eA~~~~~~m-~~~p-~~~-~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~ 618 (784)
....+.+.|++++|.+.+++. ...| +.. .|..+..++...|+++.|...++++++++|+++..+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 345667778888888888765 2344 556 788888888999999999999999999999988776
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.34 E-value=0.0082 Score=49.02 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=52.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 587 LLGACMIHKDTNLARVASEKLFELDPENVG-YHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~-~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
....+...|+++.|...++++++.+|+++. .+..++.+|...|++++|.+.++...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455677889999999999999999999999 999999999999999999999988765
No 218
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.33 E-value=0.014 Score=60.03 Aligned_cols=131 Identities=14% Similarity=0.104 Sum_probs=90.4
Q ss_pred CCCCHHHHHHHHHHHHc--cC---CHHHHHHHHHHhHHhcCCCCC-cchHHHHHHHHH----hcC-------CHHHHHHH
Q 044131 509 IRPSGVTFLSVLYACSH--AG---LVREGDEIFQSMIHDHGFKPL-AEHYACMVDILG----RAG-------QLEKALEF 571 (784)
Q Consensus 509 ~~pd~~t~~~ll~a~~~--~g---~~~~a~~~~~~m~~~~~~~p~-~~~~~~lv~~l~----r~g-------~~~eA~~~ 571 (784)
.+.|...|...+.+... .+ ...+|..+|++.++ +.|+ ...|..+.-+|. ..+ .+.+|.+-
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~---lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ---SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 45566667766665433 33 35789999999984 4787 344443332221 111 11223332
Q ss_pred HHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 572 IKGLA-VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 572 ~~~m~-~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...++ .+.++.+|.++.-.....|+++.|...++++++++|+ ...|..++.++.-.|++++|.+.++....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Alr 338 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFN 338 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33333 2446778888888788889999999999999999985 66889999999999999999999876654
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.27 E-value=0.0025 Score=66.64 Aligned_cols=432 Identities=10% Similarity=0.075 Sum_probs=228.7
Q ss_pred ChhhHhHHHHHhhCCCChhHHHHHhccCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 044131 40 DLSTVTKLAHRLSDFKATCYARALFFSIPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAAS 119 (784)
Q Consensus 40 ~~~~~~~l~~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~ 119 (784)
.+.+|+.|-.++.+.|.+.+|..-|-+ ..|...|..+|....+.|.+++-+. .+...++..-.| ..=+.|+-+++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~-yL~MaRk~~ke~--~IDteLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVK-YLQMARKKARES--YVETELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHH-HHHTTSTTCCST--TTTHHHHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHH-HHHHHHHHhccc--ccHHHHHHHHH
Confidence 455677777777777777666654433 3344455667777777777777766 555444432223 22345666666
Q ss_pred cCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCC------------------------CCcc
Q 044131 120 ACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPE------------------------KDTV 175 (784)
Q Consensus 120 ~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~------------------------~~~~ 175 (784)
+.+++.+..++.. .|++.-....-+-+...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 6665544333221 23332233333444445555555555554431 2566
Q ss_pred cHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhHHHHHhcccchhHHHHHHHHHHHhCCC-CchhHHHHHHHH
Q 044131 176 LWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAVLPAVAEVQELRLGMEIQCLGLKLGFH-DHVYVLTGLVSF 254 (784)
Q Consensus 176 ~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~-~~~~~~~~li~~ 254 (784)
+|-.+-.+|+..+.+.-|--.--.+.- ...-+..++.-|-..|.+++-..+++..+ |++ ....+++-|.-.
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIv------hadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaIL 272 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVV------HADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAIL 272 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHC------CSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcc------cHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHH
Confidence 787777778777777666544333321 11223445666666777777666666554 333 467788888888
Q ss_pred HHhcCChHHHHHHHhc----C--CC-----CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcC
Q 044131 255 YSKCGEVERAELLFRD----I--VR-----PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYP 323 (784)
Q Consensus 255 y~~~g~~~~A~~~f~~----~--~~-----~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 323 (784)
|+|-. .++-.+-++. + |+ .....|.-++-.|.+..+++.|... |.+. .|+...-..+.....+
T Consensus 273 YsKY~-PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h--~~~Aw~h~~Fkdii~K 346 (624)
T 3lvg_A 273 YSKFK-PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITK 346 (624)
T ss_dssp HHSSC-TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSC--HHHHCCGGGGTTTGGG
T ss_pred HHhcC-HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhC--ChhhccHHHHHHHHHH
Confidence 98873 4444333332 2 11 3456788888888888888766532 2111 1111111111222222
Q ss_pred CCChhHHHHHHHHHHHhCCCcchHHHHHH-------------HHHHHhcCCHHHHHHHHhhcCCCChh-HHHHHHHHHHh
Q 044131 324 FGHLHLTNCIHSFCLKSGIVSNSSVLTAL-------------STVYSRLNEMEAARKLFDESSEKSLA-SWNAMIAGYTQ 389 (784)
Q Consensus 324 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~L-------------i~~y~~~g~~~~A~~~f~~~~~~~~~-~~~~li~~~~~ 389 (784)
..+++.--+....-+ +-.+...+-| ++++.+.|++.-....+......|.. .-.++-..|..
T Consensus 347 VaN~EiyYKAi~FYL----~e~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 347 VANVELYYRAIQFYL----EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT 422 (624)
T ss_dssp CSCSHHHHHHHHHHT----TSCCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH----HhChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 233222211111111 1111122222 34555566665555555555555543 33345556666
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHH
Q 044131 390 NGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEAREL 469 (784)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~ 469 (784)
..+++.- +. -+.+|-+-.....|.++ .++ .-...-..-...|.|.++++++..+
T Consensus 423 EEDy~~L----R~---------------SId~ydNFD~i~LA~rL----EkH---eL~eFRrIAA~LYkkn~rw~qsi~l 476 (624)
T 3lvg_A 423 EEDYQAL----RT---------------SIDAYDNFDNISLAQRL----EKH---ELIEFRRIAAYLFKGNNRWKQSVEL 476 (624)
T ss_dssp TTCCHHH----HH---------------TTSSCCCSCTTHHHHHH----HTC---SSHHHHHHHHHHHHTTCHHHHHSSC
T ss_pred hhhHHHH----HH---------------HHHHhccccHHHHHHHH----hhC---chHHHHHHHHHHHHhcccHHHHHHH
Confidence 6665421 11 12222222223222222 111 1122222334567888888888776
Q ss_pred HhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 044131 470 FDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEI 535 (784)
Q Consensus 470 f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~ 535 (784)
.++=. .|--.|..-+..|+.+-|.++++-..+.| +...|.+.|..|...=+.|-.+++
T Consensus 477 ~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 477 CKKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp SSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 54322 12223444567788888888988888866 566788999999888888777765
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.05 E-value=0.19 Score=58.72 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=26.1
Q ss_pred HHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 044131 457 YAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEML 505 (784)
Q Consensus 457 y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 505 (784)
...+|++++|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.
T Consensus 662 ~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 344555555555555442 34556666666666666666666665543
No 221
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.83 E-value=0.046 Score=48.32 Aligned_cols=65 Identities=15% Similarity=0.028 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCC-C-CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 579 PGPAVWGALLGACMIHK---DTNLARVASEKLFELD-P-ENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 579 p~~~~~~~ll~a~~~~g---~~~~a~~~~~~~~~l~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++..+.-.+.+++.+.+ ++++|..+++.+++.+ | ++...+..|+-.|.+.|++++|.+.++...+
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 34445555555555544 4445555555555555 4 3344555555555555555555555555443
No 222
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.68 E-value=0.14 Score=45.17 Aligned_cols=39 Identities=18% Similarity=-0.026 Sum_probs=32.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 583 VWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 583 ~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
.+-.|.-++.+.|+++.|.+.++++++.+|++.....+.
T Consensus 73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 73 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 556677788999999999999999999999987665544
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.56 E-value=0.036 Score=54.61 Aligned_cols=87 Identities=14% Similarity=0.116 Sum_probs=69.1
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHhcCCCCC-cchHHHHHHHHHhc-CChHH
Q 044131 565 LEKALEFIKGL-AVEPG---PAVWGALLGACMI-----HKDTNLARVASEKLFELDPEN-VGYHVLLSNIYSAE-RDYLQ 633 (784)
Q Consensus 565 ~~eA~~~~~~m-~~~p~---~~~~~~ll~a~~~-----~g~~~~a~~~~~~~~~l~p~~-~~~~~~l~~~y~~~-g~~~~ 633 (784)
..+|...+++. .+.|+ ...|..|...|.. -|+.+.|++.++++++++|+. ...++..+..|+.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 45555555554 35666 5578888888877 499999999999999999975 99999999999884 99999
Q ss_pred HHHHHHHHHhCCCccCCc
Q 044131 634 AATVRQVVKKRKLAKAPG 651 (784)
Q Consensus 634 a~~~~~~m~~~~~~k~~g 651 (784)
+.+.+++......+..|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999888766664454
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.28 E-value=0.066 Score=44.28 Aligned_cols=70 Identities=19% Similarity=0.095 Sum_probs=49.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 553 ACMVDILGRAGQLEKALEFIKGLA---------VEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 553 ~~lv~~l~r~g~~~eA~~~~~~m~---------~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
-.|...+.+.|+++.|...++..- -.+...++..|..++.+.|+++.|...++++++++|+++.....+.
T Consensus 9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence 344455555555555555554320 1234568899999999999999999999999999999987755554
No 225
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.93 E-value=1.5 Score=37.26 Aligned_cols=140 Identities=11% Similarity=0.010 Sum_probs=93.7
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHH
Q 044131 489 GLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKA 568 (784)
Q Consensus 489 ~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA 568 (784)
.-.|..++..++..+.... .+..-++.++.-...+-+-+-..+.++.+-+-+.+. .+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 3457777777777777653 233445555544444555555666666664433332 34555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 044131 569 LEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKLA 647 (784)
Q Consensus 569 ~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~~ 647 (784)
...+-.+. .+....+--+.....+|.-++-..++..++.-+|-+|...+-++++|.+.|+..++.+++++.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 55444442 223344555677778899999999999877777777899999999999999999999999999999986
No 226
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.72 E-value=0.8 Score=41.48 Aligned_cols=129 Identities=14% Similarity=0.115 Sum_probs=80.6
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 044131 455 DMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDE 534 (784)
Q Consensus 455 ~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~ 534 (784)
+.-..+|+++.|.++-+.+ .+...|..+......+|+.+-|.+.|.+... |..++--|.-.|+.+.-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3456778888888887766 4677888888888888888888888887654 4455555666677655554
Q ss_pred HHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 044131 535 IFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKL 607 (784)
Q Consensus 535 ~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~ 607 (784)
+-+....+ .-++.-...+.-.|+++++.+++.+...-|.+. -..+.+|-.+.|.++.+.+
T Consensus 82 la~iA~~~-------g~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-------EDFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-------TCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-------ccHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 43332211 123444444556778888888777665322221 1223467777777776654
No 227
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.36 E-value=0.13 Score=41.56 Aligned_cols=69 Identities=14% Similarity=0.055 Sum_probs=52.8
Q ss_pred CCcchHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 547 PLAEHYACMVDILGRAGQ---LEKALEFIKGL-AVEPG-PAVWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 547 p~~~~~~~lv~~l~r~g~---~~eA~~~~~~m-~~~p~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
++.+.+..+..++...+. .++|..++++. ...|+ +..+..|...+...|+++.|...++++++.+|.++
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 446677777777765544 68888888776 35564 55777788889999999999999999999999843
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.18 E-value=2.6 Score=38.10 Aligned_cols=104 Identities=11% Similarity=0.101 Sum_probs=70.3
Q ss_pred HHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHH
Q 044131 354 TVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKW 433 (784)
Q Consensus 354 ~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~ 433 (784)
+....+|+++.|.++-+.+ .+...|..|.....+.|+++-|.+.|.+... +..++-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445788999998888776 4567899999999999999999998887642 3344444555676666665
Q ss_pred HHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC
Q 044131 434 VHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS 474 (784)
Q Consensus 434 i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~ 474 (784)
+-+.....| -++.-...+.-.|+++++.++|.+..
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 555555444 13333444555677777777766544
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.70 E-value=13 Score=43.07 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=62.6
Q ss_pred HHHHhcCCHHHHHHHHhhcCC--CC-hhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCH-HHHH---HHHHHHhhhC
Q 044131 354 TVYSRLNEMEAARKLFDESSE--KS-LASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNP-VTVS---SILSACAQLG 426 (784)
Q Consensus 354 ~~y~~~g~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~-~t~~---~ll~a~~~~~ 426 (784)
-.|.-.|+-+....++..+.+ .+ +.-.-++.-|+...|+.+.+..+.+.+... .|+ .-|. .+.-+|+..|
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTG 574 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTG 574 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSC
T ss_pred hhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCC
Confidence 334445555555555443221 11 112222333444556666666666665542 222 1222 1223455566
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcC-CCCHHH--HHHHHHHHHHcCCH-HHHHHHHH
Q 044131 427 AISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMS-HKSEVT--WNTMISGYGLHGHG-LEALQLFS 502 (784)
Q Consensus 427 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~-~~~~~~--~~~li~~~~~~g~~-~~A~~~~~ 502 (784)
+.....+++..+.... ..++.-...+.-+....|+.+.+.++++.+. ..|... --++.-|....|.. .+|+.++.
T Consensus 575 n~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~ 653 (963)
T 4ady_A 575 NNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLD 653 (963)
T ss_dssp CHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred CHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 6655555666555432 1222222222222333455555555555433 222222 22222233333332 45666666
Q ss_pred HHH
Q 044131 503 EML 505 (784)
Q Consensus 503 ~m~ 505 (784)
.+.
T Consensus 654 ~L~ 656 (963)
T 4ady_A 654 PLT 656 (963)
T ss_dssp HHH
T ss_pred HHc
Confidence 665
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=93.59 E-value=0.0012 Score=69.06 Aligned_cols=360 Identities=11% Similarity=0.088 Sum_probs=203.5
Q ss_pred hhHHHHHhccCCCCCcchHHHHHHHHhcCCCchhHHHHHHHHHhhCCCCCCcccHHHHHHHHhcCCCchHHHHHHHHHHH
Q 044131 57 TCYARALFFSIPKPDLFLFNVIIRGFSNNEMPKSSICFYTHLRKNTALTPDNFTYSFVLSAASACCDRSIGVLLHGHAIV 136 (784)
Q Consensus 57 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 136 (784)
++.|...-++...| ..|..|-.+..+.+...+|++ .|- -.-|+..|..++.++.+.|.+++-...+..+.+
T Consensus 41 ldRa~eyA~~~n~p--~VWs~LgkAqL~~~~v~eAId-syI------kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 41 LDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAID-SYI------KADDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp STTTTTSSSSCCCC--CCSSSHHHHTTTSSSCTTTTT-SSC------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred cHHHHHHHHHhCCc--cHHHHHHHHHHccCchHHHHH-HHH------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 34444333333344 469999999999999999988 331 124677899999999999999998888877776
Q ss_pred hCCCCchhHHHHHHHHhhcCCChHHHHHHhccCCCCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChhhHHhH
Q 044131 137 SGYGSDLFVGAALVDLYFKFSWVKSARKVFDKMPEKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDSTSVAAV 216 (784)
Q Consensus 137 ~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~t~~~l 216 (784)
. ..++.+=+.|+-+|+|.+++.+-++.+. .||+.--..+-.-|...|.++.|.-+|..+.. |.-+
T Consensus 112 ~--~ke~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN----------~akL 176 (624)
T 3lvg_A 112 K--ARESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRL 176 (624)
T ss_dssp T--CCSTTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC----------CTTT
T ss_pred H--hcccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc----------HHHH
Confidence 6 3455666899999999999776544432 36777777788888888888888777765432 1122
Q ss_pred HHHHhcccchhHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHH
Q 044131 217 LPAVAEVQELRLGMEIQCLGLKLGFHDHVYVLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSL 296 (784)
Q Consensus 217 l~a~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~ 296 (784)
...+..+ |++..|...-++ ..++.+|-.+-.+|+..+.+.-|-
T Consensus 177 AstLV~L-----------------------------------~~yq~AVdaArK--Ans~ktWKeV~~ACvd~~EfrLAq 219 (624)
T 3lvg_A 177 ASTLVHL-----------------------------------GEYQAAVDGARK--ANSTRTWKEVCFACVDGKEFRLAQ 219 (624)
T ss_dssp SSSSSSC-----------------------------------SGGGSSTTTTTT--CCSSCSHHHHTHHHHHSCTTTTTT
T ss_pred HHHHHHH-----------------------------------HHHHHHHHHHHh--cCChhHHHHHHHHHhCchHHHHHH
Confidence 2222333 333333221111 145566666666666666665543
Q ss_pred HHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCC-CcchHHHHHHHHHHHhcCCHHHHHHHHh----h
Q 044131 297 RLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGI-VSNSSVLTALSTVYSRLNEMEAARKLFD----E 371 (784)
Q Consensus 297 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~-~~~~~~~~~Li~~y~~~g~~~~A~~~f~----~ 371 (784)
-.--.+. +.| .-+..++..|-..|.+++-..+++..+ |+ .....+++-|.-.|+|-. .++-.+.++ +
T Consensus 220 icGLniI---vha--deL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaILYsKY~-PeKlmEHlklf~sr 291 (624)
T 3lvg_A 220 MCGLHIV---VHA--DELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAILYSKFK-PQKMREHLELFWSR 291 (624)
T ss_dssp HHHHHHH---CCS--SCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHHHHSSC-TTHHHHHHTTSSSS
T ss_pred Hhcchhc---ccH--HHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh
Confidence 3222221 111 223345555666666666555555443 22 245667788888888763 333333333 2
Q ss_pred cCCC-------ChhHHHHHHHHHHhCCChhHHHHHHHHHHhC-----------C---CCCCHHHHHHHHHHHhhhCchHH
Q 044131 372 SSEK-------SLASWNAMIAGYTQNGLTEEAISLFQEMQAS-----------K---VAPNPVTVSSILSACAQLGAISL 430 (784)
Q Consensus 372 ~~~~-------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----------g---~~pd~~t~~~ll~a~~~~~~~~~ 430 (784)
+.-| ....|.-++-.|.+..+++.|... |... . -.+|...|-..|.-|.... +..
T Consensus 292 iNipKviracE~ahLW~ElvfLY~~ydE~DnA~lt---Mi~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e~-P~l 367 (624)
T 3lvg_A 292 VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEFK-PLL 367 (624)
T ss_dssp SCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHT---TTSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTSC-CTT
T ss_pred ccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHH---HHhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHHhC-hHH
Confidence 3222 334699999999998888877532 2211 0 0233344444444443321 111
Q ss_pred HHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHH-HHHHHHHHcCCHH
Q 044131 431 GKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWN-TMISGYGLHGHGL 495 (784)
Q Consensus 431 a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~-~li~~~~~~g~~~ 495 (784)
-..++..+ ...+.. +-.++++.|.|++.-....+......|...-| ++-..|....+++
T Consensus 368 L~DLL~vL-~prlDh-----~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~ 427 (624)
T 3lvg_A 368 LNDLLMVL-SPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQ 427 (624)
T ss_dssp SHHHHHHH-CTTCCS-----TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHhc-cccCCh-----HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHH
Confidence 11111111 111111 13345666677766666666666655554443 3334455555543
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=93.28 E-value=0.56 Score=46.21 Aligned_cols=112 Identities=11% Similarity=0.072 Sum_probs=74.0
Q ss_pred hcCCHHHHHHHHhhcCCCCH--HHHHHHHHH-HHHc--CC------HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 044131 459 KCGNIVEARELFDLMSHKSE--VTWNTMISG-YGLH--GH------GLEALQLFSEMLHSGIRPS---GVTFLSVLYACS 524 (784)
Q Consensus 459 k~g~~~~A~~~f~~~~~~~~--~~~~~li~~-~~~~--g~------~~~A~~~~~~m~~~g~~pd---~~t~~~ll~a~~ 524 (784)
+.|+..+-.+.+.+....|+ ..|..++.+ ++.. |. ..+|...+++.++ +.|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 34555555555666654443 467777654 3332 32 4567777787777 5676 456777777777
Q ss_pred c-----cCCHHHHHHHHHHhHHhcCCCCC--cchHHHHHHHHHhc-CCHHHHHHHHHhC
Q 044131 525 H-----AGLVREGDEIFQSMIHDHGFKPL--AEHYACMVDILGRA-GQLEKALEFIKGL 575 (784)
Q Consensus 525 ~-----~g~~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~r~-g~~~eA~~~~~~m 575 (784)
. .|+.++|.++|++.++ +.|+ ..++..+.+.|++. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~---LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTR---YCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHH---HCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHH---hCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 7 4888888888888873 4563 67777777777774 7777777777664
No 232
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.30 E-value=1.3 Score=37.56 Aligned_cols=75 Identities=13% Similarity=-0.057 Sum_probs=47.2
Q ss_pred CCcchHHHHHHHHHhcCCHHH---HHHHHHhCC-CC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHH
Q 044131 547 PLAEHYACMVDILGRAGQLEK---ALEFIKGLA-VE-P--GPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHV 619 (784)
Q Consensus 547 p~~~~~~~lv~~l~r~g~~~e---A~~~~~~m~-~~-p--~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~ 619 (784)
|+..+--.+..+|.++....+ ++.+++..- .. | .....-.|.-++.+.|+++.|.+..+.+++.+|+|..+..
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 444444444445555554443 445544432 11 2 1123445667899999999999999999999999877665
Q ss_pred HH
Q 044131 620 LL 621 (784)
Q Consensus 620 ~l 621 (784)
+.
T Consensus 113 Lk 114 (126)
T 1nzn_A 113 LE 114 (126)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=92.26 E-value=0.69 Score=39.22 Aligned_cols=66 Identities=12% Similarity=-0.007 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhcCC-C-CCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 578 EPGPAVWGALLGACMIHKDTNL---ARVASEKLFELD-P-ENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 578 ~p~~~~~~~ll~a~~~~g~~~~---a~~~~~~~~~l~-p-~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
.|+..+--.+.+++.+.++... |+.+++.+++.+ | ..-.....|+-.|.+.|++++|.+..+.+.+
T Consensus 32 ~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 32 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4777777788888887776555 999999999877 5 4556778899999999999999999988875
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=91.90 E-value=1.2 Score=36.36 Aligned_cols=64 Identities=13% Similarity=-0.044 Sum_probs=54.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 580 GPAVWGALLGACMIHKDTNLARVASEKLFELD-------PENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 580 ~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~-------p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
++.-.-.|...+...|+++.|...++++++.. +..+..+..|+.+|.+.|++++|....+...+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 44556688899999999999999999998752 34566789999999999999999999887764
No 235
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.38 E-value=0.42 Score=54.29 Aligned_cols=55 Identities=16% Similarity=0.048 Sum_probs=50.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 588 LGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 588 l~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
..-|...|+++.|..+++++...-|++-..+..|+.+|...|+|+.|.-....+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3457789999999999999999999999999999999999999999999988774
No 236
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.14 E-value=22 Score=39.50 Aligned_cols=263 Identities=10% Similarity=0.041 Sum_probs=142.5
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 044131 345 NSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQ 424 (784)
Q Consensus 345 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 424 (784)
...+-+.-+..+.+.+++......+.. +..+...-.....+....|+..+|....+.+-..| ...+.....++.....
T Consensus 71 ~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~ 148 (618)
T 1qsa_A 71 ARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRA 148 (618)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHH
Confidence 334455566677788889888887776 44455555556677788888888888777776665 2233445556666665
Q ss_pred hCchHHH--HHHHHHHHHcC-----------CCCc-hhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHH---HHHHHHH
Q 044131 425 LGAISLG--KWVHELVKSRN-----------FESN-IYVSTALIDMYAKCGNIVEARELFDLMSHKSEVT---WNTMISG 487 (784)
Q Consensus 425 ~~~~~~a--~~i~~~~~~~g-----------~~~~-~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~---~~~li~~ 487 (784)
.|.+... .+=...+...| ++++ ......++..+.+-..+ ....... .++... ...-+.-
T Consensus 149 ~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~~~~-~~~~~~~~~~~~~~~r 224 (618)
T 1qsa_A 149 SGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFARTT-GATDFTRQMAAVAFAS 224 (618)
T ss_dssp TTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHHhcc-CCChhhHHHHHHHHHH
Confidence 4443221 11112222221 1111 11223333333222222 2222221 112211 1112223
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcC
Q 044131 488 YGLHGHGLEALQLFSEMLHSGIRPSGVTFLS----VLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAG 563 (784)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~----ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g 563 (784)
+++ .+.+.|..+|....... ..+...... +.......+...++...+...... .++.....-.+....+.|
T Consensus 225 lar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~ 299 (618)
T 1qsa_A 225 VAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTG 299 (618)
T ss_dssp HHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHT
T ss_pred HHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCC
Confidence 333 37889999998887543 223332222 222333344356677777765422 233323333444455789
Q ss_pred CHHHHHHHHHhCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHH
Q 044131 564 QLEKALEFIKGLAVEP-G-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLS 622 (784)
Q Consensus 564 ~~~eA~~~~~~m~~~p-~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~ 622 (784)
+++.|...|+.|+-.+ + ....--+..+....|+.+.|..+++++.+ + .++|-.|+
T Consensus 300 d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lA 356 (618)
T 1qsa_A 300 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVA 356 (618)
T ss_dssp CHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHH
T ss_pred CHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHH
Confidence 9999999999997443 2 22223344567778999999999999875 3 35776664
No 237
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.04 E-value=3.7 Score=35.40 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=14.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 587 LLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 587 ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
|.-++.+.|+++.|.+..+.+++.+|+|.
T Consensus 83 LAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 83 LTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 33345555555555555555555555543
No 238
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=86.28 E-value=12 Score=41.69 Aligned_cols=84 Identities=13% Similarity=0.068 Sum_probs=45.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHh---
Q 044131 383 MIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAK--- 459 (784)
Q Consensus 383 li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k--- 459 (784)
....+.-.|+++.|++.+... ...|.+.+...+..+.-++- ...++..- .+ .| ..-+..||..|.+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~~--~~-~~-~lN~arLI~~Yt~~F~ 368 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLTK--KP-KR-DIRFANILANYTKSFR 368 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC------------------------CHHHHHHHHHTTTT
T ss_pred HHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCcccccC--CC-cc-cccHHHHHHHHHHHhh
Confidence 445566689999999987644 35566677666655444332 21111110 01 11 2235678888865
Q ss_pred cCCHHHHHHHHhhcCCCC
Q 044131 460 CGNIVEARELFDLMSHKS 477 (784)
Q Consensus 460 ~g~~~~A~~~f~~~~~~~ 477 (784)
.++..+|.+.|--+.-++
T Consensus 369 ~td~~~Al~Y~~li~l~~ 386 (661)
T 2qx5_A 369 YSDPRVAVEYLVLITLNE 386 (661)
T ss_dssp TTCHHHHHHHHHGGGGSC
T ss_pred cCCHHHHHHHHHHHhccC
Confidence 578888888877665333
No 239
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=85.59 E-value=10 Score=30.22 Aligned_cols=87 Identities=13% Similarity=0.088 Sum_probs=63.6
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 427 AISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 427 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
..++|..|-+.+...+- ...+.-.-+..+...|++++|..+.+....||...|-++-. .+.|..+++..-+.++..
T Consensus 22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 97 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR 97 (116)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45677777777666553 33333334456778999999999999999999999998855 467888888888878887
Q ss_pred CCCCCCHHHHHH
Q 044131 507 SGIRPSGVTFLS 518 (784)
Q Consensus 507 ~g~~pd~~t~~~ 518 (784)
+| .|....|..
T Consensus 98 sg-~p~~q~Fa~ 108 (116)
T 2p58_C 98 SQ-DPRIQTFVN 108 (116)
T ss_dssp CC-CHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 76 565555543
No 240
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=85.34 E-value=32 Score=34.30 Aligned_cols=166 Identities=9% Similarity=0.054 Sum_probs=97.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHH----HHHHHHcCCCCChhhHHhHHHhhcC
Q 044131 248 LTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRL----FRQLLASAERVNSSTIVGLIPVFYP 323 (784)
Q Consensus 248 ~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~~ 323 (784)
+.++..=|.+.+++++|..++.. -...+.+.|+...|-++ .+...+.+++++..+...++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34455667788888888877533 23445667776666554 4555566888888887777776655
Q ss_pred CCChh-HHHHHHHHHH----HhC--CCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhC---CCh
Q 044131 324 FGHLH-LTNCIHSFCL----KSG--IVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQN---GLT 393 (784)
Q Consensus 324 ~~~~~-~a~~i~~~~~----~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~---g~~ 393 (784)
...-+ .-..+...++ +.| -..|+.....+...|.+.|++.+|+..|-.-...|...+..|+.-+.+. |..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 33211 1233333333 333 2357888899999999999999999887633222455555555444443 443
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHH
Q 044131 394 EEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVK 439 (784)
Q Consensus 394 ~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~ 439 (784)
.++-- +.-..+| -+...+++..|..++....
T Consensus 185 ~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 185 STVAE--------------FFSRLVF-NYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHH
T ss_pred chHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHH
Confidence 33211 1112222 2335667777777766543
No 241
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=85.30 E-value=6.1 Score=34.45 Aligned_cols=97 Identities=16% Similarity=0.145 Sum_probs=59.4
Q ss_pred CCCcccHHHHHHHHHcCCCc------hHHHHHHHHHHHcCCCCCChh----hHHhHHHHH---hcccchhHHHHHHHHHH
Q 044131 171 EKDTVLWNSMISGLMKNCCF------QDSIWVFGDMVRNGGTWLDST----SVAAVLPAV---AEVQELRLGMEIQCLGL 237 (784)
Q Consensus 171 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~~g~~pd~~----t~~~ll~a~---~~~~~~~~a~~~~~~~~ 237 (784)
..|..+|=..+.-.-+.|++ ++.+++|++... .++|+.. .|..+.--| ...+|++.|++++..++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR 87 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45777888888888778888 888888888776 3666542 122221111 22367777777777776
Q ss_pred HhCCCCchhHHHHHHHHHHhcCChHHHHHHHhc
Q 044131 238 KLGFHDHVYVLTGLVSFYSKCGEVERAELLFRD 270 (784)
Q Consensus 238 ~~g~~~~~~~~~~li~~y~~~g~~~~A~~~f~~ 270 (784)
+..-.. ..++......-.+.|+++.|++++.+
T Consensus 88 ~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~ 119 (161)
T 4h7y_A 88 ANCKKF-AFVHISFAQFELSQGNVKKSKQLLQK 119 (161)
T ss_dssp HHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 652222 55555555555556666666655543
No 242
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=84.96 E-value=9.6 Score=30.32 Aligned_cols=87 Identities=14% Similarity=0.056 Sum_probs=64.3
Q ss_pred chHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 044131 427 AISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLH 506 (784)
Q Consensus 427 ~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 506 (784)
..++|..|-+.+...+- ...+.-.-+..+...|++++|..+.+....||...|-++-. .+.|..+++..-+.++..
T Consensus 21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~ 96 (115)
T 2uwj_G 21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG 96 (115)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence 45667777777666553 33333334456778999999999999999999999988855 577888888888888888
Q ss_pred CCCCCCHHHHHH
Q 044131 507 SGIRPSGVTFLS 518 (784)
Q Consensus 507 ~g~~pd~~t~~~ 518 (784)
+| .|....|..
T Consensus 97 sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 97 SS-DPALADFAA 107 (115)
T ss_dssp CS-SHHHHHHHH
T ss_pred CC-CHHHHHHHH
Confidence 77 565555544
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=84.54 E-value=12 Score=32.19 Aligned_cols=68 Identities=12% Similarity=0.080 Sum_probs=39.7
Q ss_pred CCCHHHHHHHHHHHHccCC---HHHHHHHHHHhHHhcCCCCC--cchHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC
Q 044131 510 RPSGVTFLSVLYACSHAGL---VREGDEIFQSMIHDHGFKPL--AEHYACMVDILGRAGQLEKALEFIKGL-AVEPG 580 (784)
Q Consensus 510 ~pd~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~r~g~~~eA~~~~~~m-~~~p~ 580 (784)
.|+..|--...-++.++.. +.+|..+++.+.+. .|. .+..-.|.-++.|.|++++|.++.+.+ ..+|+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~---~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~ 109 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE---AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 109 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH---CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 4555554455555555553 45677777777653 232 333344555677777777777777665 35554
No 244
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=84.34 E-value=19 Score=30.80 Aligned_cols=136 Identities=13% Similarity=0.105 Sum_probs=80.9
Q ss_pred hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHH
Q 044131 389 QNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARE 468 (784)
Q Consensus 389 ~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~ 468 (784)
-.|..++..++..+.... .+..-++.++--.....+-+...++++.+-+ ..| ..+||++.....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~ 82 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVE 82 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHH
Confidence 356666666766666543 2333344444333333333333333333221 112 235666666666
Q ss_pred HHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 044131 469 LFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHD 542 (784)
Q Consensus 469 ~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 542 (784)
.+-.+.. +..-.+..+..+...|.-++-.+++..+.. +.+|++.....+.+||.+.|+..++.+++.+..+.
T Consensus 83 C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 83 CGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 6655543 333445556777788888888888887544 35778888888888888888888888888887654
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=84.06 E-value=4.3 Score=34.52 Aligned_cols=71 Identities=11% Similarity=0.065 Sum_probs=38.0
Q ss_pred CCcchHHHHHHHHHhcCCH---HHHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcch
Q 044131 547 PLAEHYACMVDILGRAGQL---EKALEFIKGL-AVEP-G-PAVWGALLGACMIHKDTNLARVASEKLFELDPENVGY 617 (784)
Q Consensus 547 p~~~~~~~lv~~l~r~g~~---~eA~~~~~~m-~~~p-~-~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~ 617 (784)
|+..+--.+..+|.++... .+++.+++.. ...| . ...+--|.-++.+.|+++.|.+..+.+++.+|+|..+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 4444444455555555543 2344444443 1223 1 2244455556666777777777777777777765443
No 246
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=83.87 E-value=7.5 Score=33.90 Aligned_cols=106 Identities=8% Similarity=0.090 Sum_probs=65.9
Q ss_pred CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHCCCCCCHH----HHHHHHHH---HHccCCHHHHHHHHHHhHH
Q 044131 475 HKSEVTWNTMISGYGLHGHG------LEALQLFSEMLHSGIRPSGV----TFLSVLYA---CSHAGLVREGDEIFQSMIH 541 (784)
Q Consensus 475 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~pd~~----t~~~ll~a---~~~~g~~~~a~~~~~~m~~ 541 (784)
..|..+|-..+.-....|+. ++..++|++.... ++|+.. .|..+.-- +...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 46778888888888888888 7888888888775 667531 11111110 1112445555555554432
Q ss_pred hcCCCCCcchHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCc
Q 044131 542 DHGFKPLAEHYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENV 615 (784)
Q Consensus 542 ~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~ 615 (784)
. -+.-+.+|-....--.++|++..|..++.+++.+.|...
T Consensus 89 ~----------------------------------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 89 N----------------------------------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp H----------------------------------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred H----------------------------------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 1 011155676666666778888888888888888887643
No 247
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.30 E-value=15 Score=39.07 Aligned_cols=177 Identities=14% Similarity=0.143 Sum_probs=114.4
Q ss_pred CCHHHHHHHHhhcCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHH----Hcc
Q 044131 461 GNIVEARELFDLMSH---------KSEVTWNTMISGYGLHGHGLEALQLFSEMLH-SGIRPSGVTFLSVLYAC----SHA 526 (784)
Q Consensus 461 g~~~~A~~~f~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~pd~~t~~~ll~a~----~~~ 526 (784)
|+++.|.+.+-.+.+ ........++..+...|+++...+.+.-+.. .|..+..++ .++..| ...
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~--~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQ--YMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHH--HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHH--HHHHHHHHHHhcC
Confidence 678888887754431 2345677888999999999999888776654 333333333 233222 222
Q ss_pred CCHHH--HHHHHHHhHHhcCCCCC--------cchHHHHHHHHHhcCCHHHHHHHHHhCC---C--CCC---HHHHHHHH
Q 044131 527 GLVRE--GDEIFQSMIHDHGFKPL--------AEHYACMVDILGRAGQLEKALEFIKGLA---V--EPG---PAVWGALL 588 (784)
Q Consensus 527 g~~~~--a~~~~~~m~~~~~~~p~--------~~~~~~lv~~l~r~g~~~eA~~~~~~m~---~--~p~---~~~~~~ll 588 (784)
...+. -....+.. ..+... ......|.++|...|++.+|.+++..++ . .+. ...+.-.+
T Consensus 108 ~~~d~~~~~~~i~~l---~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 108 KSLDLNTRISVIETI---RVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp CTTHHHHHHHHHHCC---SSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHH---HHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 32222 11222111 122221 1223568899999999999999998874 1 111 33667777
Q ss_pred HHHHhcCCHHHHHHHHHHHhc---CCCCC----cchHHHHHHHHHhcCChHHHHHHHHHHH
Q 044131 589 GACMIHKDTNLARVASEKLFE---LDPEN----VGYHVLLSNIYSAERDYLQAATVRQVVK 642 (784)
Q Consensus 589 ~a~~~~g~~~~a~~~~~~~~~---l~p~~----~~~~~~l~~~y~~~g~~~~a~~~~~~m~ 642 (784)
..|...+|+..|..+.+++.. -.|.+ ..+|.+++.++...++|.+|.+.+...-
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 899999999999999988642 12222 2477889999999999999998876653
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=83.07 E-value=41 Score=33.79 Aligned_cols=132 Identities=17% Similarity=0.139 Sum_probs=81.7
Q ss_pred HHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHH----HHHHHcCCCCChhhHHhHHHhhcCC
Q 044131 249 TGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLF----RQLLASAERVNSSTIVGLIPVFYPF 324 (784)
Q Consensus 249 ~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~~~ 324 (784)
.++.+=|.+.+++++|.+++-. -...+.+.|+...|-++- +-..+.++++|..+...++..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 3455567888888888887532 234456677766655544 5556678889988888777777665
Q ss_pred CChh-HHHHHHHHH----HHhC--CCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCC
Q 044131 325 GHLH-LTNCIHSFC----LKSG--IVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNG 391 (784)
Q Consensus 325 ~~~~-~a~~i~~~~----~~~g--~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g 391 (784)
..-+ .-..+...+ .+.| -..|+.....+...|.+.+++.+|+..|-.-.+.++..+..|+.-+...+
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~ 181 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQD 181 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence 5322 112233333 3334 34577788888888999999999888874322222345555554444443
No 249
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=82.54 E-value=32 Score=38.34 Aligned_cols=40 Identities=15% Similarity=0.140 Sum_probs=25.7
Q ss_pred HHHHHhhcCCChHHHHHHhccCCC---CCcccHHHHHHHHHcC
Q 044131 148 ALVDLYFKFSWVKSARKVFDKMPE---KDTVLWNSMISGLMKN 187 (784)
Q Consensus 148 ~li~~y~~~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~ 187 (784)
++|--+.|||++++|.++.++... .-...+-..+..|+.+
T Consensus 157 a~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s 199 (661)
T 2qx5_A 157 ALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASS 199 (661)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC---
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhC
Confidence 466677899999999999887652 1224666777777643
No 250
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=81.99 E-value=43 Score=33.31 Aligned_cols=167 Identities=14% Similarity=0.130 Sum_probs=98.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHH----HHHHHhCCCCCCHHHHHHHHHHHhhh
Q 044131 350 TALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISL----FQEMQASKVAPNPVTVSSILSACAQL 425 (784)
Q Consensus 350 ~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~pd~~t~~~ll~a~~~~ 425 (784)
.++..=|.+.+++++|.+++.. -...+.+.|+...|-++ .+-..+.++++|..+...++..+...
T Consensus 37 Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~ 105 (312)
T 2wpv_A 37 RTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL 105 (312)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence 3444556677777777776542 12334556665554443 44455567888887777777766553
Q ss_pred CchH-HHHHHHHHHH----HcCC--CCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHc---CCHH
Q 044131 426 GAIS-LGKWVHELVK----SRNF--ESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLH---GHGL 495 (784)
Q Consensus 426 ~~~~-~a~~i~~~~~----~~g~--~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~---g~~~ 495 (784)
..-+ .=..+...++ +.|- .-++.....+...|.+.|++.+|+.-|-.-...|...+..|+.-+.+. |...
T Consensus 106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~ 185 (312)
T 2wpv_A 106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS 185 (312)
T ss_dssp CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence 3211 1123333333 3322 237788899999999999999999988743333566666665554444 5444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 044131 496 EALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHD 542 (784)
Q Consensus 496 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 542 (784)
++--..-+ ++| -|.-.|++..|...|+...+.
T Consensus 186 e~dlf~~R--------------aVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 186 TVAEFFSR--------------LVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHH--------------HHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred hHHHHHHH--------------HHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 43222222 122 244678899999988877654
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.16 E-value=8.3 Score=34.25 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=13.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC
Q 044131 555 MVDILGRAGQLEKALEFIKGLA 576 (784)
Q Consensus 555 lv~~l~r~g~~~eA~~~~~~m~ 576 (784)
+...|...|+.++|+..++.+|
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHCCHHHHHHHHhcCC
Confidence 4555566666666666666665
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.28 E-value=68 Score=33.87 Aligned_cols=96 Identities=11% Similarity=0.075 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHhHHh-cCCCC--C--c
Q 044131 480 TWNTMISGYGLHGHGLEALQLFSEMLHS--GIRPS---GVTFLSVLYACSHAGLVREGDEIFQSMIHD-HGFKP--L--A 549 (784)
Q Consensus 480 ~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~pd---~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~-~~~~p--~--~ 549 (784)
....|...|...|++.+|..++.++... |..+. ...+...+..|...+++.+|..++.++... ....+ + .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 4455777788889999999999887643 22221 124566677899999999999999887432 12222 2 4
Q ss_pred chHHHHHHHHHhcCCHHHHHHHHHhC
Q 044131 550 EHYACMVDILGRAGQLEKALEFIKGL 575 (784)
Q Consensus 550 ~~~~~lv~~l~r~g~~~eA~~~~~~m 575 (784)
..|.+++..+...+++.+|...|...
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 56788999999999999998877554
No 253
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.16 E-value=11 Score=36.49 Aligned_cols=123 Identities=20% Similarity=0.111 Sum_probs=63.6
Q ss_pred HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHH
Q 044131 488 YGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEK 567 (784)
Q Consensus 488 ~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~e 567 (784)
..+.|+.++|++....-++.. +-|...-..++.-++-.|++++|.+-++...+ +.|+...-..+..-+.++....+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~aE~~R~ 82 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAAQARK 82 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHHHHHHH
Confidence 445677777777777666642 33444455566677777777777777776652 34543222211111212111111
Q ss_pred HHHHHH--hCC-CCCCHHHHHH-HHHHHH--hcCCHHHHHHHHHHHhcCCCCCcc
Q 044131 568 ALEFIK--GLA-VEPGPAVWGA-LLGACM--IHKDTNLARVASEKLFELDPENVG 616 (784)
Q Consensus 568 A~~~~~--~m~-~~p~~~~~~~-ll~a~~--~~g~~~~a~~~~~~~~~l~p~~~~ 616 (784)
++|. ..| +.-.+.-|.. |+.+.. ..|+.+.|..+-+++++.-|..++
T Consensus 83 --~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 83 --DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp --HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred --HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1221 112 1111222433 344433 458888888888888877776655
No 254
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=78.56 E-value=23 Score=28.21 Aligned_cols=84 Identities=13% Similarity=0.150 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 044131 328 HLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASK 407 (784)
Q Consensus 328 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 407 (784)
++|..|-+.+...+- ...+--.-+......|++++|..+.+....||.++|-+|-. .+.|..+++..-+.++..+|
T Consensus 23 qEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 98 (115)
T 2uwj_G 23 EEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 444444444444432 33333333445677899999999999999999999988865 46788888888887887766
Q ss_pred CCCCHHHHH
Q 044131 408 VAPNPVTVS 416 (784)
Q Consensus 408 ~~pd~~t~~ 416 (784)
.|....|.
T Consensus 99 -~p~~q~Fa 106 (115)
T 2uwj_G 99 -DPALADFA 106 (115)
T ss_dssp -SHHHHHHH
T ss_pred -CHHHHHHH
Confidence 44444443
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=78.25 E-value=24 Score=28.13 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHhCCCcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCC
Q 044131 328 HLTNCIHSFCLKSGIVSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASK 407 (784)
Q Consensus 328 ~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 407 (784)
++|..|-+.+...+- ...+--.-+......|++++|..+.+....||.++|-+|-. .+.|..+++..-+.++..+|
T Consensus 24 qEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg 99 (116)
T 2p58_C 24 EEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ 99 (116)
T ss_dssp HHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence 444444444444432 33333333445677899999999999999999999988866 35677777777777777665
Q ss_pred CCCCHHHHH
Q 044131 408 VAPNPVTVS 416 (784)
Q Consensus 408 ~~pd~~t~~ 416 (784)
.|....|.
T Consensus 100 -~p~~q~Fa 107 (116)
T 2p58_C 100 -DPRIQTFV 107 (116)
T ss_dssp -CHHHHHHH
T ss_pred -CHHHHHHH
Confidence 44444443
No 256
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=78.16 E-value=42 Score=30.83 Aligned_cols=107 Identities=12% Similarity=0.255 Sum_probs=73.3
Q ss_pred HHHHHHHHhCC-CCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 566 EKALEFIKGLA-VEPGPA---VWGALLGACMIHKDTNLARVASEKLFE--LDPENVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 566 ~eA~~~~~~m~-~~p~~~---~~~~ll~a~~~~g~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
+.+...|...+ .+-|+- +|-.++..| ..++......+++.+.. +.-..+..|...+..+...|+|.+|.++++
T Consensus 61 Erc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 139 (202)
T 3esl_A 61 ERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLE 139 (202)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444433 444544 666666655 34556788888888775 667788899999999999999999999999
Q ss_pred HHHhCCCccCCcccEEEECCEEEEEEeCCCCCcchHHHHHHHHHHHHHHHHcCcccCCC
Q 044131 640 VVKKRKLAKAPGCTLIEVGGTPHVFTSGDQLHPQSTAIYAMLEKLNGKMREAGFQTETV 698 (784)
Q Consensus 640 ~m~~~~~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~ 698 (784)
.-.+++.+ | .+.+.....+...+|...+.+.+..
T Consensus 140 ~GI~~~A~------------------------P-~~rL~~~~~~F~~R~~~~~~~~~~~ 173 (202)
T 3esl_A 140 LGAENNCR------------------------P-YNRLLRSLSNYEDRLREMNIVENQN 173 (202)
T ss_dssp HHHHTTCB------------------------S-HHHHHHHHHHHHHHHHHTTCCCC--
T ss_pred HHHHcCCc------------------------c-HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 87776654 3 2445666677788888887744433
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=78.16 E-value=11 Score=39.14 Aligned_cols=70 Identities=7% Similarity=0.022 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH----hcCCCCCcchH
Q 044131 482 NTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIH----DHGFKPLAEHY 552 (784)
Q Consensus 482 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~~ 552 (784)
..++..+...|++.+|+..++.+.... +-+...+..++.++...|+..+|++.|+...+ +.|+.|..++-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 345566667777777777777776542 44666777777777777777777777776543 45777775543
No 258
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.13 E-value=64 Score=32.39 Aligned_cols=168 Identities=11% Similarity=0.054 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHH----HHHHhCCCCCCHHHHHHHHHHHh
Q 044131 348 VLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLF----QEMQASKVAPNPVTVSSILSACA 423 (784)
Q Consensus 348 ~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~pd~~t~~~ll~a~~ 423 (784)
.+.++..=|.+.+++++|.+++.. =...+.+.|+...|-++- +-..+.++++|..+...++..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 345566678889999999887643 123455667765554443 44556778888888888887776
Q ss_pred hhCchHHH-HHHHHHHH----HcC--CCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHH
Q 044131 424 QLGAISLG-KWVHELVK----SRN--FESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLE 496 (784)
Q Consensus 424 ~~~~~~~a-~~i~~~~~----~~g--~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~ 496 (784)
....-+-. ..+...++ +.| -.-|+.....+...|.+.+++.+|+.-|---.++.+..+..|+.-+...+...+
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e 185 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHT 185 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGG
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCcc
Confidence 65532211 22333333 333 233677888899999999999999998853333334566555554444332222
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHH
Q 044131 497 ALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIH 541 (784)
Q Consensus 497 A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~ 541 (784)
+ |...-.++| -|...+++..|...|+...+
T Consensus 186 ~--------------dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 186 A--------------PLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp H--------------HHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred H--------------HHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 1 111112222 35567788888887776654
No 259
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=76.16 E-value=72 Score=32.97 Aligned_cols=55 Identities=11% Similarity=-0.026 Sum_probs=24.5
Q ss_pred HHHHHHccCCHHHHHHHHHHhHHhcCCCCC----cchHHHHHHHHHhcCCHHHHHHHHH
Q 044131 519 VLYACSHAGLVREGDEIFQSMIHDHGFKPL----AEHYACMVDILGRAGQLEKALEFIK 573 (784)
Q Consensus 519 ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~lv~~l~r~g~~~eA~~~~~ 573 (784)
+...+...|++.+|.+++..+.+...-..+ .+.|..-+.+|...|++.++...+.
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~ 163 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALT 163 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 344444555555555555444433211111 2334444455555555555554443
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=75.56 E-value=17 Score=29.16 Aligned_cols=50 Identities=20% Similarity=0.173 Sum_probs=38.1
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHH
Q 044131 572 IKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLL 621 (784)
Q Consensus 572 ~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l 621 (784)
+-.+-+-|++.+..+-|.||++.+|+..|.++++-+-..-.+....|-.+
T Consensus 36 l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~ 85 (109)
T 1v54_E 36 LVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV 85 (109)
T ss_dssp HTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred HhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHH
Confidence 33456889999999999999999999999999998765433334444433
No 261
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=75.02 E-value=19 Score=30.53 Aligned_cols=81 Identities=12% Similarity=0.137 Sum_probs=51.2
Q ss_pred HHHHHHHH-HC-CCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHhHHhcCCCCC--cchHHHHHHHHHhcCCHHHHHH
Q 044131 498 LQLFSEML-HS-GIRPSGVTFLSVLYACSHAGL---VREGDEIFQSMIHDHGFKPL--AEHYACMVDILGRAGQLEKALE 570 (784)
Q Consensus 498 ~~~~~~m~-~~-g~~pd~~t~~~ll~a~~~~g~---~~~a~~~~~~m~~~~~~~p~--~~~~~~lv~~l~r~g~~~eA~~ 570 (784)
+..|++-- ++ +-.|+..|--...-++.++.. ..+|..+++.+.+. + |. .+.+--+.-++.|.|++++|.+
T Consensus 23 L~~l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~--~~~~Rd~LYyLAvg~yklgdY~~Ar~ 99 (134)
T 3o48_A 23 LEILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-A--ESRRRECLYYLTIGCYKLGEYSMAKR 99 (134)
T ss_dssp HHHHHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-C--GGGHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C--cchhHHHHHHHHHHHHHhhhHHHHHH
Confidence 44444333 22 334566555555556666654 45788888888754 2 42 4555566777888899999988
Q ss_pred HHHhC-CCCCCH
Q 044131 571 FIKGL-AVEPGP 581 (784)
Q Consensus 571 ~~~~m-~~~p~~ 581 (784)
+++.+ ..+|+.
T Consensus 100 y~d~lL~~eP~N 111 (134)
T 3o48_A 100 YVDTLFEHERNN 111 (134)
T ss_dssp HHHHHHTTCTTC
T ss_pred HHHHHHhhCCCC
Confidence 88876 467753
No 262
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=74.84 E-value=5.6 Score=41.49 Aligned_cols=60 Identities=17% Similarity=-0.016 Sum_probs=48.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 584 WGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 584 ~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
...++.++...|+.+.+...++.++..+|-+-..|..|..+|...|+..+|.+.++..++
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566777788888888888888888888888888888888888998888888776643
No 263
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=70.89 E-value=33 Score=34.89 Aligned_cols=74 Identities=11% Similarity=0.082 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044131 349 LTALSTVYSRLNEMEAARKLFDESSEKS---LASWNAMIAGYTQNGL--TEEAISLFQEMQASKVAPNPVTVSSILSAC 422 (784)
Q Consensus 349 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 422 (784)
.+.++.=|...|+.++|.+.++++..+. .+...++..++-+.++ .+...+++..+...|+-+.......+.+.+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcchHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 4678888999999999999999998763 2344555555554433 355778888888887665544443333333
No 264
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=69.81 E-value=67 Score=29.36 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=33.1
Q ss_pred CchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044131 445 SNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACS 524 (784)
Q Consensus 445 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 524 (784)
++..+-...+....+.|..+....+.+.+..++...-...+.++...|.. +++..+.++.. .||...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444444444455555443333333333444444444444444444442 23333333332 234444344444444
Q ss_pred ccC
Q 044131 525 HAG 527 (784)
Q Consensus 525 ~~g 527 (784)
..|
T Consensus 169 ~~~ 171 (211)
T 3ltm_A 169 EIG 171 (211)
T ss_dssp HHC
T ss_pred HhC
Confidence 444
No 265
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.53 E-value=1.1e+02 Score=36.90 Aligned_cols=147 Identities=9% Similarity=-0.055 Sum_probs=81.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcC
Q 044131 484 MISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAG 563 (784)
Q Consensus 484 li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g 563 (784)
++..+...|.++-|.++..- .+-|...--.+..++...|++++|.++|++.. .|+.++.... .
T Consensus 818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa--~~~~~~~~l~----------~ 880 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS--LVLYSHTSQF----------A 880 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC--CSCTTCCCSC----------S
T ss_pred HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh--hhhcccchhh----------h
Confidence 45556666776666554332 22233333344556777888888888887653 2443332211 1
Q ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-CCcc----hHHHHHHHHHhcCChHHHHHH
Q 044131 564 QLEKALEFIKGLAV-EPGPAVWGALLGACMIHKDTNLARVASEKLFELDP-ENVG----YHVLLSNIYSAERDYLQAATV 637 (784)
Q Consensus 564 ~~~eA~~~~~~m~~-~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p-~~~~----~~~~l~~~y~~~g~~~~a~~~ 637 (784)
...+...+...-+. ..-+.-|.-++..+..+|.++.+.+.++.+++..+ ++.. .|..+-+.+...|++++|...
T Consensus 881 ~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 881 VLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp SHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred hhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 11111122222221 11233456666777778888888888877776443 3321 455566667777888888887
Q ss_pred HHHHHhCCCc
Q 044131 638 RQVVKKRKLA 647 (784)
Q Consensus 638 ~~~m~~~~~~ 647 (784)
...+.+...+
T Consensus 961 L~~~pd~~~r 970 (1139)
T 4fhn_B 961 LMVLSTTPLK 970 (1139)
T ss_dssp HHHHHHSSSC
T ss_pred HHhCCCHHHH
Confidence 7777665544
No 266
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=69.31 E-value=76 Score=38.29 Aligned_cols=143 Identities=11% Similarity=0.013 Sum_probs=91.8
Q ss_pred HHHHHHhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCC---------C-----------
Q 044131 417 SILSACAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSH---------K----------- 476 (784)
Q Consensus 417 ~ll~a~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~---------~----------- 476 (784)
.++..|...+..+.++++.... +.++...-.+..+|..+|++++|...|.+... .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 3555566667666666654332 23444444566778889999999999987641 0
Q ss_pred ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--H--HHHHHHHHHHccCCHHHHHHHHHHhHHhcCCC
Q 044131 477 ------SEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG--V--TFLSVLYACSHAGLVREGDEIFQSMIHDHGFK 546 (784)
Q Consensus 477 ------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~--~--t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~ 546 (784)
-..-|.-++..|.++|.++.++++-+..++..-+-+. . .|..+..++...|++++|...+-.+... .
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence 1123566777888889998888888777664222121 2 3677888888999999998888776421 1
Q ss_pred CCcchHHHHHHHHHhcCCHHH
Q 044131 547 PLAEHYACMVDILGRAGQLEK 567 (784)
Q Consensus 547 p~~~~~~~lv~~l~r~g~~~e 567 (784)
-.......+|..++..|.+++
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHhCCChhh
Confidence 224456666766666665544
No 267
>2l0z_A Glycoprotein G2; zinc-binding domain, virus envelope glycoprotein, GPC, junin arenavirus, viral protein; NMR {Junin virus}
Probab=68.49 E-value=1.6 Score=27.83 Aligned_cols=13 Identities=46% Similarity=1.160 Sum_probs=9.9
Q ss_pred ccc-cCCcCCCCCC
Q 044131 771 HHF-KGGVCSCGDY 783 (784)
Q Consensus 771 h~f-~~g~csc~d~ 783 (784)
|.. ++|.||||-|
T Consensus 16 HRL~~~~~C~CG~y 29 (42)
T 2l0z_A 16 HRLNSLGGCRCGKY 29 (42)
T ss_dssp SCCCTTSSBTTTTB
T ss_pred ceecCCceeccccc
Confidence 444 5899999977
No 268
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=68.36 E-value=33 Score=27.53 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHH
Q 044131 493 HGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVD 557 (784)
Q Consensus 493 ~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 557 (784)
+.-+..+-++.+....+-|++....+.|.||.+.+++..|..+|+.+..+. .+....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 344566666677777789999999999999999999999999999987543 344566777764
No 269
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=65.20 E-value=30 Score=29.34 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=47.4
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 044131 567 KALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKKRKL 646 (784)
Q Consensus 567 eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~~~~ 646 (784)
.++.-+-.+.+-|++.+..+-|.||++.+|+..|.+++|-+-..-.+....|-.+. .++.-.+.+-|+
T Consensus 74 rglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l------------qElkPtl~ELGI 141 (152)
T 2y69_E 74 KGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI------------QELRPTLNELGI 141 (152)
T ss_dssp HHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH------------HHHHHHHHHHTC
T ss_pred HHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH------------HHHhhHHHHhCC
Confidence 33333445568899999999999999999999999999987654322244444332 344555556665
Q ss_pred c
Q 044131 647 A 647 (784)
Q Consensus 647 ~ 647 (784)
.
T Consensus 142 ~ 142 (152)
T 2y69_E 142 S 142 (152)
T ss_dssp C
T ss_pred C
Confidence 4
No 270
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.84 E-value=97 Score=29.50 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhCCCcchH--HHHHHHHHHHhcCCHHHHHHHHh
Q 044131 330 TNCIHSFCLKSGIVSNSS--VLTALSTVYSRLNEMEAARKLFD 370 (784)
Q Consensus 330 a~~i~~~~~~~g~~~~~~--~~~~Li~~y~~~g~~~~A~~~f~ 370 (784)
...+...+++.|..++.. ...+.+...++.|..+-+..+++
T Consensus 198 ~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 198 VEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp HHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344445555555443321 11122333444555555555554
No 271
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=64.63 E-value=30 Score=30.64 Aligned_cols=26 Identities=12% Similarity=0.135 Sum_probs=21.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHH
Q 044131 616 GYHVLLSNIYSAERDYLQAATVRQVV 641 (784)
Q Consensus 616 ~~~~~l~~~y~~~g~~~~a~~~~~~m 641 (784)
..-..++..|.+.|++++|..+.+.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 45567999999999999999987654
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=64.24 E-value=55 Score=31.35 Aligned_cols=47 Identities=13% Similarity=-0.072 Sum_probs=24.1
Q ss_pred ccchhHHHHHHHHHHHhCCCCchh--HHHHHHHHHHhcCChHHHHHHHh
Q 044131 223 VQELRLGMEIQCLGLKLGFHDHVY--VLTGLVSFYSKCGEVERAELLFR 269 (784)
Q Consensus 223 ~~~~~~a~~~~~~~~~~g~~~~~~--~~~~li~~y~~~g~~~~A~~~f~ 269 (784)
.++.....++...+++.|..++.. ...+.+...++.|..+-+..+++
T Consensus 192 ~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE 240 (285)
T ss_dssp CSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 344444455666666666655432 12233444455566666665555
No 273
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=61.46 E-value=52 Score=37.29 Aligned_cols=18 Identities=6% Similarity=0.076 Sum_probs=12.4
Q ss_pred hCCC-hhHHHHHHHHHHhC
Q 044131 389 QNGL-TEEAISLFQEMQAS 406 (784)
Q Consensus 389 ~~g~-~~~A~~l~~~m~~~ 406 (784)
-.++ .+.|+++|+++...
T Consensus 260 ~t~~~~~~a~~~le~L~~~ 278 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKK 278 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhh
Confidence 3444 47788888888775
No 274
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=59.71 E-value=4 Score=34.91 Aligned_cols=40 Identities=10% Similarity=0.327 Sum_probs=28.7
Q ss_pred CCeEEEE----eccccCCcccchhhhhhhhcCceEEEecCCccccccCCcCC
Q 044131 732 GTEIRII----KNLRVCLDCHTATKFISKVTGRVIVVRDANRFHHFKGGVCS 779 (784)
Q Consensus 732 ~~~~~~~----kn~r~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~cs 779 (784)
.-.+||+ ++.+||-+| .|+..-..-+++-+||+|+++.|-
T Consensus 44 ~~~~Riv~~~~~~~~vi~n~--------~i~~~~~y~~~~~~Fh~w~~~~~~ 87 (130)
T 1qc6_A 44 SSTFRVVGVKLQDQQVVINY--------SIVKGLKYNQATPTFHQWRDARQV 87 (130)
T ss_dssp TTEEEEEEECTTTCCEEEEE--------ECCTTCEEEEEETTEEEEECSSCE
T ss_pred CcEEEEEEEeCCCCeEEEee--------EEeCCcEEeccCCeeEEEEcCCEE
Confidence 4467776 567888777 344444455799999999999873
No 275
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=55.60 E-value=22 Score=34.42 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=34.9
Q ss_pred HHHhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 044131 558 ILGRAGQLEKALEFIKGL-AVEP-GPAVWGALLGACMIHKDTNLARVASEKLFELDPEN 614 (784)
Q Consensus 558 ~l~r~g~~~eA~~~~~~m-~~~p-~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~ 614 (784)
.+.+.|.+++|++.+..- .-.| |...-..|...++..|+++.|..-++.+.+++|+.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 345667777776665432 2334 44455556666677777777777777777777653
No 276
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=55.14 E-value=1.2e+02 Score=27.29 Aligned_cols=80 Identities=14% Similarity=0.088 Sum_probs=34.6
Q ss_pred CchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 044131 445 SNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACS 524 (784)
Q Consensus 445 ~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~ 524 (784)
++..+-...+.++.+.|..+....+...+..+|...-...+.++...|.. +++..+.++.. .+|...-...+.++.
T Consensus 88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~ 163 (201)
T 3ltj_A 88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALG 163 (201)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 34444444455555555443333333344445544444444555544442 23333333332 234444444444444
Q ss_pred ccCC
Q 044131 525 HAGL 528 (784)
Q Consensus 525 ~~g~ 528 (784)
..|.
T Consensus 164 ~~~~ 167 (201)
T 3ltj_A 164 EIGG 167 (201)
T ss_dssp HHCS
T ss_pred HhCc
Confidence 4443
No 277
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=54.71 E-value=3.3 Score=26.66 Aligned_cols=13 Identities=31% Similarity=0.687 Sum_probs=10.3
Q ss_pred ccccCCcccchhh
Q 044131 740 NLRVCLDCHTATK 752 (784)
Q Consensus 740 n~r~c~dch~~~k 752 (784)
|.|||.+||--+-
T Consensus 16 ~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 16 QYRVCEKCGKPLA 28 (44)
T ss_dssp CEEECTTTCCEEE
T ss_pred cchhhcccCCcch
Confidence 6899999996543
No 278
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=53.72 E-value=72 Score=27.12 Aligned_cols=60 Identities=15% Similarity=0.207 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHH
Q 044131 496 EALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVD 557 (784)
Q Consensus 496 ~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~ 557 (784)
+..+-++.+....+-|++....+.|.||.+.+++..|..+|+.++.+ ..+..+.|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 45555666666778999999999999999999999999999998654 3455667877764
No 279
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=51.29 E-value=1.9e+02 Score=28.54 Aligned_cols=65 Identities=14% Similarity=0.161 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHhCCC--hhHHHHHHHHHHhCCCCCCHH
Q 044131 349 LTALSTVYSRLNEMEAARKLFDESSEKSL---ASWNAMIAGYTQNGL--TEEAISLFQEMQASKVAPNPV 413 (784)
Q Consensus 349 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~ 413 (784)
.+.++.-|...|+.++|.+.++++..|.- +....+..++-+.++ .+....++..+...|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 45688889899999999999999987622 344455555544433 345667888888777555443
No 280
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=49.80 E-value=69 Score=31.81 Aligned_cols=42 Identities=10% Similarity=0.094 Sum_probs=34.4
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 572 IKGLAVEPG--PAVWGALLGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 572 ~~~m~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
|...+++|. ..++.+-++.+.+++|+..|...+++++++.|.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 239 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISS 239 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 334456664 337888889999999999999999999999985
No 281
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=47.59 E-value=1e+02 Score=25.96 Aligned_cols=65 Identities=12% Similarity=0.153 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCh---hHHHHHHHHHHhCCC--hhHHHHHHHHHHhCCCCCCHH
Q 044131 349 LTALSTVYSRLNEMEAARKLFDESSEKSL---ASWNAMIAGYTQNGL--TEEAISLFQEMQASKVAPNPV 413 (784)
Q Consensus 349 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~~---~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~ 413 (784)
.+.++.-|...|+.++|.+.++++..|.- +....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~q 79 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 79 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 46688889999999999999999876622 344555555555442 356778888888877655443
No 282
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=46.98 E-value=4e+02 Score=30.97 Aligned_cols=214 Identities=10% Similarity=0.008 Sum_probs=107.9
Q ss_pred HHhcCCHHHHHHHHhhcCC----CCh--hHHHHHHHHHHhCCChhHHHHHHHHHHhCCC--CCC---HHH-HHH-HHHHH
Q 044131 356 YSRLNEMEAARKLFDESSE----KSL--ASWNAMIAGYTQNGLTEEAISLFQEMQASKV--APN---PVT-VSS-ILSAC 422 (784)
Q Consensus 356 y~~~g~~~~A~~~f~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~pd---~~t-~~~-ll~a~ 422 (784)
....|+.+++..+++.-.. .+. ..-..+.-|.+..|..++++.++.......- .-+ ... ... +--+.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4456778888888887554 122 2333444566777777788887777654311 011 111 111 11112
Q ss_pred hhhCc-hHHHHHHHHHHHHcCCCCch--hhHhHHHHHHHhcCCHHHHHHHHhhcC-C-CC-HHHHHHHHHHHHHcCCHHH
Q 044131 423 AQLGA-ISLGKWVHELVKSRNFESNI--YVSTALIDMYAKCGNIVEARELFDLMS-H-KS-EVTWNTMISGYGLHGHGLE 496 (784)
Q Consensus 423 ~~~~~-~~~a~~i~~~~~~~g~~~~~--~~~~~Li~~y~k~g~~~~A~~~f~~~~-~-~~-~~~~~~li~~~~~~g~~~~ 496 (784)
+..|. -+.+...+..++...- ... ...-+|.-.|.-.|+-+....++..+. . .+ +.-.-++.-|+...|+.+.
T Consensus 464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~ 542 (963)
T 4ady_A 464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL 542 (963)
T ss_dssp HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence 22222 2344444444443221 111 112233344555677766666666543 1 22 2223333344556788888
Q ss_pred HHHHHHHHHHCCCCCCHH-HHH---HHHHHHHccCCHHHHHHHHHHhHHhcCCCCCcchHHHHHHHHHhcCCHHHHHHHH
Q 044131 497 ALQLFSEMLHSGIRPSGV-TFL---SVLYACSHAGLVREGDEIFQSMIHDHGFKPLAEHYACMVDILGRAGQLEKALEFI 572 (784)
Q Consensus 497 A~~~~~~m~~~g~~pd~~-t~~---~ll~a~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~lv~~l~r~g~~~eA~~~~ 572 (784)
+..+.+.+... +|.. -|. ++..+|+..|+.....+++..+.++ ...++.....+.-++.-.|+.+.+.+++
T Consensus 543 ~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 543 ADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred HHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888888763 3333 233 3345677788887777788887653 1222332333333333456655556665
Q ss_pred HhC
Q 044131 573 KGL 575 (784)
Q Consensus 573 ~~m 575 (784)
+.+
T Consensus 618 ~~L 620 (963)
T 4ady_A 618 QLL 620 (963)
T ss_dssp TTG
T ss_pred HHH
Confidence 543
No 283
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.42 E-value=67 Score=33.72 Aligned_cols=90 Identities=11% Similarity=0.047 Sum_probs=42.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--CCCcc----hHH
Q 044131 551 HYACMVDILGRAGQLEKALEFIKGLA-----VEPGPAVWGALLGACMIHKDTNLARVASEKLFELD--PENVG----YHV 619 (784)
Q Consensus 551 ~~~~lv~~l~r~g~~~eA~~~~~~m~-----~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~--p~~~~----~~~ 619 (784)
.+..+.+.|.+.|++++|.+.+.++. ...-...+-.++..|...+|+..+....+++..+- ..++. ...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 44455555556666666655555541 11112345555555555666666666555554321 11111 112
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q 044131 620 LLSNIYSAERDYLQAATVRQV 640 (784)
Q Consensus 620 ~l~~~y~~~g~~~~a~~~~~~ 640 (784)
.-+-++...++|.+|.+.|-.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e 233 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVD 233 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHH
Confidence 233344455666666655533
No 284
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=46.38 E-value=1.5e+02 Score=28.60 Aligned_cols=91 Identities=12% Similarity=0.066 Sum_probs=39.8
Q ss_pred hHHHHHhcccchhHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCChHHHHHHHhcC---CCCCeeeHHHHHHHHHhCC
Q 044131 215 AVLPAVAEVQELRLGMEIQCLGLKLGFHD-HVYVLTGLVSFYSKCGEVERAELLFRDI---VRPDLISCNAMISGYTCNG 290 (784)
Q Consensus 215 ~ll~a~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~li~~y~~~g~~~~A~~~f~~~---~~~d~~~~~~li~~~~~~g 290 (784)
+.+...+..|+.+.. ..+++.|..+ +.....+.+...+..|..+-+..+++.- ..+|..-++..+..-++.|
T Consensus 131 t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~ 206 (285)
T 3kea_A 131 TSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK 206 (285)
T ss_dssp SHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHT
T ss_pred CHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcC
Confidence 344444444554333 3333444333 1113344444555666666665555432 1223223333222222333
Q ss_pred CchHHHHHHHHHHHcCCCCChhh
Q 044131 291 KTESSLRLFRQLLASAERVNSST 313 (784)
Q Consensus 291 ~~~~A~~l~~~m~~~g~~p~~~t 313 (784)
+ .++.+.+++.|..|+...
T Consensus 207 ~----~~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 207 D----IEMLQALFKYDINIYSAN 225 (285)
T ss_dssp C----HHHHHHHTTSCBCSTTTT
T ss_pred C----HHHHHHHHHcCCCCCCCC
Confidence 3 344555566676666554
No 285
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=45.41 E-value=1.5e+02 Score=28.71 Aligned_cols=23 Identities=4% Similarity=-0.226 Sum_probs=13.7
Q ss_pred hHHHHHhhCCCChhHHHHHhccC
Q 044131 45 TKLAHRLSDFKATCYARALFFSI 67 (784)
Q Consensus 45 ~~l~~~y~~~g~~~~A~~~f~~~ 67 (784)
.+.+...+..|+.+-...+++.-
T Consensus 32 ~t~L~~A~~~g~~~~v~~Ll~~g 54 (285)
T 3kea_A 32 HSASYYAIADNNVRLVCTLLNAG 54 (285)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCHHHHHHHcCCHHHHHHHHhCC
Confidence 34445555667777776666653
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=41.75 E-value=1.1e+02 Score=28.14 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=8.6
Q ss_pred HHHHhcCChHHHHHHHhc
Q 044131 253 SFYSKCGEVERAELLFRD 270 (784)
Q Consensus 253 ~~y~~~g~~~~A~~~f~~ 270 (784)
...++.|+.+-+..+++.
T Consensus 155 ~~A~~~~~~~~v~~Ll~~ 172 (241)
T 1k1a_A 155 IHAVENNSLSMVQLLLQH 172 (241)
T ss_dssp HHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHc
Confidence 333445555555555443
No 287
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=41.30 E-value=2e+02 Score=25.92 Aligned_cols=153 Identities=12% Similarity=0.073 Sum_probs=87.4
Q ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 044131 345 NSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQ 424 (784)
Q Consensus 345 ~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~ 424 (784)
+..+-...+....+.|..+....+.+.+.++|...-...+.++.+.+.. ++...+.++.. .+|...-...+.++..
T Consensus 32 ~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~ 107 (211)
T 3ltm_A 32 SYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQ 107 (211)
T ss_dssp SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Confidence 3444444444444555433334444445555554444455555555543 34444445443 4666666677777777
Q ss_pred hCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 044131 425 LGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFSEM 504 (784)
Q Consensus 425 ~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 504 (784)
.+..+....+.. +.+ .++..+-...+.++++.|..+....+...+..+|...-...+.++...+. .++...+.++
T Consensus 108 ~~~~~~~~~L~~-~l~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~ 182 (211)
T 3ltm_A 108 IGDERAVEPLIK-ALK---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKL 182 (211)
T ss_dssp HCCGGGHHHHHH-HTT---CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHH
T ss_pred hCcHHHHHHHHH-HHh---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence 776543333333 222 45666667777777777776544445555556777776777777777776 5566666666
Q ss_pred HH
Q 044131 505 LH 506 (784)
Q Consensus 505 ~~ 506 (784)
.+
T Consensus 183 l~ 184 (211)
T 3ltm_A 183 AE 184 (211)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 288
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=41.13 E-value=1.8e+02 Score=25.28 Aligned_cols=76 Identities=12% Similarity=0.034 Sum_probs=51.8
Q ss_pred HHHHHHHHhCC-CCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 566 EKALEFIKGLA-VEPGPA---VWGALLGACMIHKDTNLARVASEKLFE--LDPENVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 566 ~eA~~~~~~m~-~~p~~~---~~~~ll~a~~~~g~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
+.+...|...+ .+-|+- +|-..+..| .+ ...+++.+.. +.-..+..|...+..+...|++++|.+|++
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 125 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN---SD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQ 125 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---SC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44455554443 445544 454444432 22 6777877775 556778899999999999999999999998
Q ss_pred HHHhCCCc
Q 044131 640 VVKKRKLA 647 (784)
Q Consensus 640 ~m~~~~~~ 647 (784)
.-.+++.+
T Consensus 126 ~Gi~~~A~ 133 (152)
T 4a1g_A 126 RGIQNQAE 133 (152)
T ss_dssp HHHHTTCB
T ss_pred HHHHcCCc
Confidence 87766544
No 289
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.87 E-value=73 Score=33.40 Aligned_cols=96 Identities=10% Similarity=-0.032 Sum_probs=65.1
Q ss_pred hHhHHHHHHHhcCCHHHHHHHHhhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---CCCCCCHHHHH--
Q 044131 449 VSTALIDMYAKCGNIVEARELFDLMSH------KSEVTWNTMISGYGLHGHGLEALQLFSEMLH---SGIRPSGVTFL-- 517 (784)
Q Consensus 449 ~~~~Li~~y~k~g~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~pd~~t~~-- 517 (784)
+...+.+.|.++|+++.|.+.|.++.. .-+..|-..|..+...+++..+...+.+... .+-.|+...-.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556788888899999999888887752 2345677778888888999998888887654 33333332211
Q ss_pred HHHHHHHccCCHHHHHHHHHHhHHhcC
Q 044131 518 SVLYACSHAGLVREGDEIFQSMIHDHG 544 (784)
Q Consensus 518 ~ll~a~~~~g~~~~a~~~~~~m~~~~~ 544 (784)
.-...+...+++.+|...|-.....+.
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 112234567888888888877765543
No 290
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=40.17 E-value=2e+02 Score=25.64 Aligned_cols=155 Identities=12% Similarity=0.072 Sum_probs=94.6
Q ss_pred CcchHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 044131 343 VSNSSVLTALSTVYSRLNEMEAARKLFDESSEKSLASWNAMIAGYTQNGLTEEAISLFQEMQASKVAPNPVTVSSILSAC 422 (784)
Q Consensus 343 ~~~~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~ 422 (784)
.+|..+....+....+.|..+....+.+.+..++...-...+.++.+.|.. ++...+.++.. .++...-...+.++
T Consensus 25 ~~~~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 25 DDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVAL 100 (201)
T ss_dssp CSCHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 344555555555555555544444555555566655544555566666654 44555555553 46777777777888
Q ss_pred hhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 044131 423 AQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVEARELFDLMSHKSEVTWNTMISGYGLHGHGLEALQLFS 502 (784)
Q Consensus 423 ~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 502 (784)
...+..+....+...+ . .++..+-...+.+.++.|..+....+...+..++...-...+.++...|. .+++..+.
T Consensus 101 ~~~~~~~~~~~L~~~l-~---d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-~~~~~~L~ 175 (201)
T 3ltj_A 101 GQIGDERAVEPLIKAL-K---DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAME 175 (201)
T ss_dssp HHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHH
T ss_pred HHhCcHHHHHHHHHHH-c---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHH
Confidence 8877755444443332 2 45667777777888888876555555555566777777777777777775 45666666
Q ss_pred HHHH
Q 044131 503 EMLH 506 (784)
Q Consensus 503 ~m~~ 506 (784)
++.+
T Consensus 176 ~~l~ 179 (201)
T 3ltj_A 176 KLAE 179 (201)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6665
No 291
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=38.40 E-value=99 Score=26.93 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=45.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCC---hhHHHHHHHHHHhCCC--hhHHHHHHHHHHhCCCCCCHH
Q 044131 349 LTALSTVYSRLNEMEAARKLFDESSEKS---LASWNAMIAGYTQNGL--TEEAISLFQEMQASKVAPNPV 413 (784)
Q Consensus 349 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~pd~~ 413 (784)
.+.++.-|...|+.++|.+.++++..|. .+....+..++-+.++ .+.+..++..+...|+-+...
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~~q 81 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQ 81 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHHH
Confidence 4678888999999999999999997662 2344555555555332 355778888888877655443
No 292
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=38.33 E-value=1.6e+02 Score=26.12 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=25.1
Q ss_pred HHHhcCChHHHHHHHhcC-CC---CCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCC
Q 044131 254 FYSKCGEVERAELLFRDI-VR---PDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVN 310 (784)
Q Consensus 254 ~y~~~g~~~~A~~~f~~~-~~---~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 310 (784)
..++.|+.+-+..+++.- .. +|..-++.+..+.........-.++.+.+.+.|..++
T Consensus 112 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 112 PAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence 344455665555555443 11 2333334443333222223333455555555555544
No 293
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=37.94 E-value=2.9e+02 Score=27.26 Aligned_cols=193 Identities=11% Similarity=0.135 Sum_probs=94.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcCCCCh--hHHHHHHHHHHhCCCh--hHHHHHHHHHHhCCCCCCHH--HHHHHHHHH
Q 044131 349 LTALSTVYSRLNEMEAARKLFDESSEKSL--ASWNAMIAGYTQNGLT--EEAISLFQEMQASKVAPNPV--TVSSILSAC 422 (784)
Q Consensus 349 ~~~Li~~y~~~g~~~~A~~~f~~~~~~~~--~~~~~li~~~~~~g~~--~~A~~l~~~m~~~g~~pd~~--t~~~ll~a~ 422 (784)
..++++-|...|+.++|...++++..+.- ..-..+|..-...++. +.+-.++..+...-+.++.+ .|..++..+
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCGTVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 45678889899999999999999876642 1222333333333322 33445667775422333222 344455444
Q ss_pred hhhC-chHHHHHHH----HHHHHcCCCCchhhHhHHHHHHHhcCC--HHHHHHHHhh------cC--------CCCH---
Q 044131 423 AQLG-AISLGKWVH----ELVKSRNFESNIYVSTALIDMYAKCGN--IVEARELFDL------MS--------HKSE--- 478 (784)
Q Consensus 423 ~~~~-~~~~a~~i~----~~~~~~g~~~~~~~~~~Li~~y~k~g~--~~~A~~~f~~------~~--------~~~~--- 478 (784)
.... +...|..++ .+++..++-|-..+....-..-...|. +..|..++.. +. ....
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~eel 165 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVNHL 165 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHHHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHHHH
Confidence 4433 333444433 334444443332222211100000000 2233333310 00 0111
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--HHHHHHHHHHhHHh
Q 044131 479 -VTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGL--VREGDEIFQSMIHD 542 (784)
Q Consensus 479 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~--~~~a~~~~~~m~~~ 542 (784)
...+.++.-|...|+.+||.+.++++......| .+....+..+..+.+. .+....++..+.+.
T Consensus 166 kkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~ 231 (307)
T 2zu6_B 166 VKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKS 231 (307)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHC
Confidence 145667888888899999998888875211111 2334445555555433 34455666666543
No 294
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=36.98 E-value=3.1e+02 Score=28.17 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=9.3
Q ss_pred HHHHhcCChHHHHHHHhc
Q 044131 253 SFYSKCGEVERAELLFRD 270 (784)
Q Consensus 253 ~~y~~~g~~~~A~~~f~~ 270 (784)
...++.|+.+-...+++.
T Consensus 118 ~~A~~~g~~~~v~~Ll~~ 135 (437)
T 1n11_A 118 HIAAREGHVETVLALLEK 135 (437)
T ss_dssp HHHHHHTCHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhC
Confidence 334445566555555544
No 295
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=36.16 E-value=1.9e+02 Score=26.49 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=11.8
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCC
Q 044131 184 LMKNCCFQDSIWVFGDMVRNGGTWLD 209 (784)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~~g~~pd 209 (784)
.++.|+.+-...+++.+... +..++
T Consensus 16 A~~~g~~~~v~~Ll~~~~~~-~~~~~ 40 (241)
T 1k1a_A 16 AVVQGNLPAVHRLVNLFQQG-GRELD 40 (241)
T ss_dssp HHHTTCHHHHHHHHHHHHHT-TCCSC
T ss_pred HHHcCCHHHHHHHHHHHHhc-CCCCC
Confidence 34455555555555444444 44443
No 296
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=35.34 E-value=4.8e+02 Score=28.61 Aligned_cols=363 Identities=10% Similarity=-0.007 Sum_probs=170.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHHHHHHHHHhCCCchHHHHHHHHHHHcCCCCChhhHHhHHHhhcCCCC
Q 044131 247 VLTGLVSFYSKCGEVERAELLFRDIVRPDLISCNAMISGYTCNGKTESSLRLFRQLLASAERVNSSTIVGLIPVFYPFGH 326 (784)
Q Consensus 247 ~~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 326 (784)
.-+.-+..+.+.+++......+.. +..+...--....+....|+..+|....+.+-..|- .....+..++....+.|.
T Consensus 74 Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~ 151 (618)
T 1qsa_A 74 LQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGK 151 (618)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCC
Confidence 334455556666777776665555 322333333345556666776667666666655442 223344444444443333
Q ss_pred hhH--HHHHHHHHHHhC-----------CCcc-hHHHHHHHHHHHhcCCHHHHHHHHhhcCCCChhH---HHHHHHHHHh
Q 044131 327 LHL--TNCIHSFCLKSG-----------IVSN-SSVLTALSTVYSRLNEMEAARKLFDESSEKSLAS---WNAMIAGYTQ 389 (784)
Q Consensus 327 ~~~--a~~i~~~~~~~g-----------~~~~-~~~~~~Li~~y~~~g~~~~A~~~f~~~~~~~~~~---~~~li~~~~~ 389 (784)
+.. ..+=...+...| +.++ ......++..+.+-..+. ...... .++... ...-+.-+++
T Consensus 152 lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~---~~~~~~-~~~~~~~~~~~~~~~rlar 227 (618)
T 1qsa_A 152 QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVL---TFARTT-GATDFTRQMAAVAFASVAR 227 (618)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHH---HHHHHS-CCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHH---HHHhcc-CCChhhHHHHHHHHHHHHh
Confidence 221 111111111111 1111 112222332222222221 111111 111111 1111222333
Q ss_pred CCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH----HhhhCchHHHHHHHHHHHHcCCCCchhhHhHHHHHHHhcCCHHH
Q 044131 390 NGLTEEAISLFQEMQASKVAPNPVTVSSILSA----CAQLGAISLGKWVHELVKSRNFESNIYVSTALIDMYAKCGNIVE 465 (784)
Q Consensus 390 ~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a----~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y~k~g~~~~ 465 (784)
.+.+.|..+|....... ..+......+-.. ....+....+...+....... .+.....-.+..-.+.|+++.
T Consensus 228 -~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 -QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp -HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHH
T ss_pred -cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHH
Confidence 36788888888876543 2333333222222 233342334444444444332 222223334444456799999
Q ss_pred HHHHHhhcCCC--C-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhHHh
Q 044131 466 ARELFDLMSHK--S-EVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSGVTFLSVLYACSHAGLVREGDEIFQSMIHD 542 (784)
Q Consensus 466 A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~~~~~m~~~ 542 (784)
|...|..|... + ....-=+..++...|+.++|..+|+++... . +|..++.+ .+.|..-. + ..
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lAa-~~Lg~~~~-------~-~~ 368 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVAA-QRIGEEYE-------L-KI 368 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHHH-HHTTCCCC-------C-CC
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHHH-HHcCCCCC-------C-CC
Confidence 99999998753 2 222223445667789999999999988642 1 45555533 22221000 0 00
Q ss_pred cCCCCC-cc-----hHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC---C
Q 044131 543 HGFKPL-AE-----HYACMVDILGRAGQLEKALEFIKGLAVEPGPAVWGALLGACMIHKDTNLARVASEKLFELDP---E 613 (784)
Q Consensus 543 ~~~~p~-~~-----~~~~lv~~l~r~g~~~eA~~~~~~m~~~p~~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p---~ 613 (784)
..+.+. .. .-..-+..|.+.|...+|...+....-..+......+.......|..+.+.....+.-..+. .
T Consensus 369 ~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~~~~~~ 448 (618)
T 1qsa_A 369 DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEER 448 (618)
T ss_dssp CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTTCHHHH
T ss_pred CCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhcchhhh
Confidence 001111 00 11223456778899999988776653233444444555555678888888877655433220 1
Q ss_pred CcchHHHHHHHHHhcCChHHH
Q 044131 614 NVGYHVLLSNIYSAERDYLQA 634 (784)
Q Consensus 614 ~~~~~~~l~~~y~~~g~~~~a 634 (784)
-|..|.-+..-+++.-..+..
T Consensus 449 ~P~~y~~~i~~~a~~~gv~~~ 469 (618)
T 1qsa_A 449 FPLAYNDLFKRYTSGKEIPQS 469 (618)
T ss_dssp SCCTTHHHHHHHHTTSSSCHH
T ss_pred CCcchHHHHHHHHHHcCCCHH
Confidence 123454455555554444443
No 297
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=34.02 E-value=2.3e+02 Score=24.98 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=51.4
Q ss_pred HHHHHHHHhCC-CCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 566 EKALEFIKGLA-VEPGPA---VWGALLGACMIHKDTNLARVASEKLFE--LDPENVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 566 ~eA~~~~~~m~-~~p~~~---~~~~ll~a~~~~g~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
+.+...|..-+ .+-|+- +|-.++..| ++ ...+++.+.. +.-..+..|...+..|...|+|.+|.+|++
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444443332 444544 555555543 33 5566776664 556778899999999999999999999998
Q ss_pred HHHhCCCc
Q 044131 640 VVKKRKLA 647 (784)
Q Consensus 640 ~m~~~~~~ 647 (784)
.-.+++.+
T Consensus 121 ~Gi~~~A~ 128 (164)
T 2wvi_A 121 EGIQQKAE 128 (164)
T ss_dssp HHHHTTCB
T ss_pred HHHHcCCC
Confidence 87776654
No 298
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=33.26 E-value=90 Score=29.50 Aligned_cols=87 Identities=10% Similarity=-0.038 Sum_probs=42.3
Q ss_pred HHcCCCchHHHHHHHHHHHcCCCCCChhh-------HHhHHHHHh--cccchhHHHHHHHHHHHhCC---------CCch
Q 044131 184 LMKNCCFQDSIWVFGDMVRNGGTWLDSTS-------VAAVLPAVA--EVQELRLGMEIQCLGLKLGF---------HDHV 245 (784)
Q Consensus 184 ~~~~g~~~~A~~l~~~m~~~~g~~pd~~t-------~~~ll~a~~--~~~~~~~a~~~~~~~~~~g~---------~~~~ 245 (784)
.++.|+.+....+++.+... |..++... .+.+..|+. ..|+.+..+.+++.....+. ....
T Consensus 12 A~~~g~~~~v~~ll~~l~~~-~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d 90 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTH-KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVY 90 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHH-TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSS
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccc
Confidence 44567777666666666555 55555332 223333332 45666666666655433110 0000
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHhcC
Q 044131 246 YVLTGLVSFYSKCGEVERAELLFRDI 271 (784)
Q Consensus 246 ~~~~~li~~y~~~g~~~~A~~~f~~~ 271 (784)
....+.+...+..|+.+-+..+++.-
T Consensus 91 ~~g~t~L~~A~~~g~~~~v~~Ll~~g 116 (260)
T 3jxi_A 91 YRGQTALHIAIERRCKHYVELLVEKG 116 (260)
T ss_dssp EESBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence 01222334445567776666666544
No 299
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=32.01 E-value=1.6e+02 Score=27.04 Aligned_cols=14 Identities=7% Similarity=0.097 Sum_probs=6.4
Q ss_pred hcCCChHHHHHHhc
Q 044131 154 FKFSWVKSARKVFD 167 (784)
Q Consensus 154 ~~~g~~~~A~~~f~ 167 (784)
++.|..+-+..+++
T Consensus 117 ~~~~~~~~~~~Ll~ 130 (240)
T 3eu9_A 117 AQFGHTSIVAYLIA 130 (240)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCHHHHHHHHHh
Confidence 34455444444444
No 300
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=31.69 E-value=53 Score=18.04 Aligned_cols=17 Identities=29% Similarity=0.642 Sum_probs=13.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 044131 674 STAIYAMLEKLNGKMRE 690 (784)
Q Consensus 674 ~~~i~~~l~~l~~~~~~ 690 (784)
.+++|.+|+.|..++++
T Consensus 3 adelykeledlqerlrk 19 (27)
T 3twe_A 3 ADELYKELEDLQERLRK 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56788888888777664
No 301
>1j0t_A MIH, MOLT-inhibiting hormone; alpha-helical protein, hormone/growth factor complex; NMR {Marsupenaeus japonicus} SCOP: a.163.1.1
Probab=30.98 E-value=5.3 Score=30.30 Aligned_cols=14 Identities=43% Similarity=0.850 Sum_probs=10.8
Q ss_pred eccccCCcccchhh
Q 044131 739 KNLRVCLDCHTATK 752 (784)
Q Consensus 739 kn~r~c~dch~~~k 752 (784)
|--|||.|||+...
T Consensus 20 kldrVCdDCyNLyR 33 (78)
T 1j0t_A 20 KVVRVCEDCTNIFR 33 (78)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 34599999998764
No 302
>2k0q_A Putative uncharacterized protein COPK; copper, heavy metal resistance, open barrel, plasmid- encoded, metal binding protein; NMR {Cupriavidus metallidurans} PDB: 2km0_A 2lel_A 3dso_A 3dsp_A 3n7d_A 3n7e_A
Probab=30.68 E-value=14 Score=26.93 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=16.7
Q ss_pred ceEEEecCCccccccCCcCC
Q 044131 760 RVIVVRDANRFHHFKGGVCS 779 (784)
Q Consensus 760 r~i~~rd~~rfh~f~~g~cs 779 (784)
..|=+.|.+-.|+||||+-+
T Consensus 8 k~v~LkDGstvyiFKDGKMa 27 (74)
T 2k0q_A 8 KTYDLQDGSKVHVFKDGKMG 27 (74)
T ss_dssp EEEEBTTSCEEEEETTSCEE
T ss_pred eeEecCCCcEEEEEcCCcee
Confidence 45778899999999999854
No 303
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.20 E-value=90 Score=30.93 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=34.0
Q ss_pred HHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 044131 572 IKGLAVEPG--PAVWGALLGACMIHKDTNLARVASEKLFELDPE 613 (784)
Q Consensus 572 ~~~m~~~p~--~~~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~ 613 (784)
|....++|. ..++.+-++.+.+++|+..|...+++++++.|.
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~ 230 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPK 230 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCC
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence 334456664 337888889999999999999999999999886
No 304
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=29.77 E-value=2.3e+02 Score=25.75 Aligned_cols=60 Identities=20% Similarity=0.204 Sum_probs=36.4
Q ss_pred HHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHH
Q 044131 565 LEKALEFIKGLAVEPGPA-------VWGALLGACMIHKDTNLARVASEKLFELDPENVGYHVLLSNI 624 (784)
Q Consensus 565 ~~eA~~~~~~m~~~p~~~-------~~~~ll~a~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~ 624 (784)
++.|+.+++.+.-.-+.. +--.....|...|.+++|++++++.++-+|++...-.-|.++
T Consensus 94 LESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~I 160 (211)
T 3bqo_A 94 LESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMI 160 (211)
T ss_dssp HHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 566777777775332311 122344689999999999999999999887766554444444
No 305
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=28.15 E-value=10 Score=20.92 Aligned_cols=13 Identities=46% Similarity=1.515 Sum_probs=8.1
Q ss_pred cccCCcC--CCCCCC
Q 044131 772 HFKGGVC--SCGDYW 784 (784)
Q Consensus 772 ~f~~g~c--sc~d~w 784 (784)
.|.+|.| .||+-|
T Consensus 8 ~fgngfcgdncgnsw 22 (27)
T 2hgo_A 8 NFGNGFCGDNCGNSW 22 (27)
T ss_dssp EETTTEEECSSSCEE
T ss_pred eecCccccCCcCCcc
Confidence 4677777 466555
No 306
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=27.09 E-value=2e+02 Score=26.31 Aligned_cols=21 Identities=5% Similarity=-0.097 Sum_probs=10.5
Q ss_pred HHHhhcCCChHHHHHHhccCC
Q 044131 150 VDLYFKFSWVKSARKVFDKMP 170 (784)
Q Consensus 150 i~~y~~~g~~~~A~~~f~~~~ 170 (784)
+...++.|+.+-+..+++.-.
T Consensus 46 L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 46 LHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHcCC
Confidence 344445555555555554433
No 307
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=27.04 E-value=2.5e+02 Score=24.76 Aligned_cols=18 Identities=6% Similarity=0.086 Sum_probs=11.4
Q ss_pred hhCCCChhHHHHHhccCC
Q 044131 51 LSDFKATCYARALFFSIP 68 (784)
Q Consensus 51 y~~~g~~~~A~~~f~~~~ 68 (784)
.+..|+.+....++..-+
T Consensus 12 A~~~g~~~~v~~ll~~~~ 29 (201)
T 3hra_A 12 AANQRDTKKVKEILQDTT 29 (201)
T ss_dssp HHHTTCHHHHHHHHTCTT
T ss_pred HHHhccHHHHHHHHHcCC
Confidence 345677777777776543
No 308
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=26.13 E-value=3e+02 Score=28.20 Aligned_cols=53 Identities=19% Similarity=0.401 Sum_probs=24.5
Q ss_pred HHHhcCCHHHHHHHHhhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH
Q 044131 456 MYAKCGNIVEARELFDLMSH---KSEVTWNTMISGYGLHGHGLEALQLFSEMLHSGIRPSG 513 (784)
Q Consensus 456 ~y~k~g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~pd~ 513 (784)
.-++.|+.+-+.-+++.-.. +|..-++.|..+ ++.|+. ++.+.+.+.|..|+.
T Consensus 317 ~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A-~~~g~~----~iv~~Ll~~ga~~~~ 372 (437)
T 1n11_A 317 VASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA-AQQGHT----DIVTLLLKNGASPNE 372 (437)
T ss_dssp HHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHH-HHTTCH----HHHHHHHHTTCCSCC
T ss_pred HHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH-HHCChH----HHHHHHHHCcCCCCC
Confidence 33455666655555553322 222223333332 234543 344555566766654
No 309
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=25.35 E-value=2.9e+02 Score=25.17 Aligned_cols=62 Identities=5% Similarity=0.082 Sum_probs=40.4
Q ss_pred HHHHHHHH---hCCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhhCc-----hHHHHHHHHHHHHcCC
Q 044131 381 NAMIAGYT---QNGLTEEAISLFQEMQASKVAPNPVTVSSILSACAQLGA-----ISLGKWVHELVKSRNF 443 (784)
Q Consensus 381 ~~li~~~~---~~g~~~~A~~l~~~m~~~g~~pd~~t~~~ll~a~~~~~~-----~~~a~~i~~~~~~~g~ 443 (784)
--+|+++. +..+++.|+-.+-+|++.| .|..+.-..++.+.-..|. +..+...++....-|+
T Consensus 15 Yd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 84 (204)
T 2r9g_A 15 YDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGL 84 (204)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34555554 5689999999999999999 7776666666666655552 3334444444445554
No 310
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.58 E-value=3.1e+02 Score=22.88 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=40.5
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCC
Q 044131 450 STALIDMYAKCGNIVEARELFDLMSHKS---EVTWNTMISGYGLHGH--GLEALQLFSEMLHSGIRP 511 (784)
Q Consensus 450 ~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 511 (784)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.+. .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4567788888889999999888887653 2344455555555432 345667777777666443
No 311
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.54 E-value=2.1e+02 Score=23.50 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=23.6
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 044131 600 ARVASEKLFELDPENVGYHVLLSNIYSAERDYLQAATVRQVVKK 643 (784)
Q Consensus 600 a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~~m~~ 643 (784)
|+..+++.+.+..+-+. ..-..|++|.++..+|++
T Consensus 48 GI~eLe~Gl~I~~~~~~---------~~g~~we~Ar~lq~KM~~ 82 (116)
T 2dl1_A 48 GIGHLLRGISISSKESE---------HTGPGWESARQMQQKMKE 82 (116)
T ss_dssp HHHHHHHHHSSCCCCTT---------CCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccCCC---------CCChhHHHHHHHHHHHHH
Confidence 55666666666554221 233569999999999986
No 312
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=24.54 E-value=1.3e+02 Score=28.26 Aligned_cols=49 Identities=6% Similarity=-0.115 Sum_probs=22.5
Q ss_pred cCCCchhHHHHHHHHHhhCCCCCCcc-------cHHHHHHHHh--cCCCchHHHHHHHH
Q 044131 84 NNEMPKSSICFYTHLRKNTALTPDNF-------TYSFVLSAAS--ACCDRSIGVLLHGH 133 (784)
Q Consensus 84 ~~g~~~~a~~~~~~~m~~~~~~p~~~-------t~~~ll~~~~--~~~~~~~a~~~~~~ 133 (784)
+.|+.+.... +++.+...|..++.. -.+.|..++. +.|+.+..+.+++.
T Consensus 14 ~~g~~~~v~~-ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 14 SRGSPDGLEG-LLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDI 71 (260)
T ss_dssp HHTCGGGGTT-HHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHH
T ss_pred HhCCHHHHHH-HHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHh
Confidence 4455555544 555444444444422 2233333332 44565555555544
No 313
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=24.35 E-value=1.9e+02 Score=30.87 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=31.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhHHhcCC--CCC---cchHHHHHHHHHhcCCHHHHHHHHHh
Q 044131 515 TFLSVLYACSHAGLVREGDEIFQSMIHDHGF--KPL---AEHYACMVDILGRAGQLEKALEFIKG 574 (784)
Q Consensus 515 t~~~ll~a~~~~g~~~~a~~~~~~m~~~~~~--~p~---~~~~~~lv~~l~r~g~~~eA~~~~~~ 574 (784)
.++.++.-|.+.+.+++|..+..+.. +.. .++ ...+-.+...+.-.+++.+|.+.+..
T Consensus 233 l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~ 295 (523)
T 4b4t_S 233 LINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIA 295 (523)
T ss_dssp HHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 45666677777777777777776552 110 011 11112234455566677777666654
No 314
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.55 E-value=2.9e+02 Score=25.20 Aligned_cols=201 Identities=12% Similarity=0.011 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCCCcccHH--HHHHHHhcCCCchHHHHHHHHHHHhCCCCchhHHHHHHHHhhcCCChHHHHHHhccC
Q 044131 92 ICFYTHLRKNTALTPDNFTYS--FVLSAASACCDRSIGVLLHGHAIVSGYGSDLFVGAALVDLYFKFSWVKSARKVFDKM 169 (784)
Q Consensus 92 ~~~~~~~m~~~~~~p~~~t~~--~ll~~~~~~~~~~~a~~~~~~~~~~g~~~d~~~~~~li~~y~~~g~~~~A~~~f~~~ 169 (784)
.+ +++.+.+.|..++..... +.|...+..++.+..+.+.+. ...+........+.+...+..|+.+-+..+++.-
T Consensus 24 ~~-~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~ 100 (237)
T 3b7b_A 24 VD-ICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100 (237)
T ss_dssp HH-HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred HH-HHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q ss_pred C----CCCcccHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCChh--hHHhHHHHHhcccchhHHHHHHHHHHHhCCCC
Q 044131 170 P----EKDTVLWNSMISGLMKNCCFQDSIWVFGDMVRNGGTWLDST--SVAAVLPAVAEVQELRLGMEIQCLGLKLGFHD 243 (784)
Q Consensus 170 ~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~~g~~pd~~--t~~~ll~a~~~~~~~~~a~~~~~~~~~~g~~~ 243 (784)
+ .++...++.+..+..... .++++.+.+. |..++.. .-.+.+...+..|+.+ +...+++.|..+
T Consensus 101 ~~~~~~~~~~g~t~L~~A~~~~~-----~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~ 170 (237)
T 3b7b_A 101 QMDVNCQDDGGWTPMIWATEYKH-----VDLVKLLLSK-GSDINIRDNEENICLHWAAFSGCVD----IAEILLAAKCDL 170 (237)
T ss_dssp CCCTTCCCTTSCCHHHHHHHTTC-----HHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCCHH----HHHHHHTTTCCT
T ss_pred CCCcccCCCCCCCHHHHHHHcCC-----HHHHHHHHHC-CCCCCccCCCCCCHHHHHHHCCCHH----HHHHHHHcCCCC
Q ss_pred chhH--HHHHHHHHHhcCChHHHHHHHhcCCCCCeeeHH--HHHHHHHhCCCchHHHHHHHHHHHc
Q 044131 244 HVYV--LTGLVSFYSKCGEVERAELLFRDIVRPDLISCN--AMISGYTCNGKTESSLRLFRQLLAS 305 (784)
Q Consensus 244 ~~~~--~~~li~~y~~~g~~~~A~~~f~~~~~~d~~~~~--~li~~~~~~g~~~~A~~l~~~m~~~ 305 (784)
+... ..+.+...++.|+.+-+.-+++.-..++....+ +-+...+..|+...++++.+.+++.
T Consensus 171 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~ds 236 (237)
T 3b7b_A 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQDS 236 (237)
T ss_dssp TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHHC
T ss_pred CCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhcc
No 315
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=22.14 E-value=1.3e+02 Score=32.03 Aligned_cols=43 Identities=21% Similarity=0.090 Sum_probs=22.1
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 044131 591 CMIHKDTNLARVASEKLFELDPENVGYHVLLSNIYSAERDYLQ 633 (784)
Q Consensus 591 ~~~~g~~~~a~~~~~~~~~l~p~~~~~~~~l~~~y~~~g~~~~ 633 (784)
.+.....+.|...|+++..+.|++...|..|+-++...|+.-+
T Consensus 162 ~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~ 204 (497)
T 1ya0_A 162 ARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLT 204 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHH
Confidence 3334444555555555555555555555555555555554444
No 316
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=21.85 E-value=19 Score=28.20 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=16.5
Q ss_pred hccCCCCCeEEEEeccccCCcccchhhh
Q 044131 726 LIATEPGTEIRIIKNLRVCLDCHTATKF 753 (784)
Q Consensus 726 l~~~~~~~~~~~~kn~r~c~dch~~~k~ 753 (784)
||.-|-.++ -|.|||.+|+--+++
T Consensus 64 ii~~~Ld~~----~~YRvCn~CGkPI~l 87 (96)
T 3mhs_E 64 LIEDPLDKP----IQYRVCEKCGKPLAL 87 (96)
T ss_dssp CCSSTTSSS----CCCEEETTTCCEECG
T ss_pred hhcccCCCc----ccchhhhccCCceeH
Confidence 344444444 589999999987764
No 317
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=21.78 E-value=5.8e+02 Score=25.09 Aligned_cols=88 Identities=11% Similarity=0.060 Sum_probs=59.7
Q ss_pred HHHHHHHHcCCCCChhhHHhHHHhhcCCCChhHHHHHHHHHHHhCCCcchHHHHHHHHHH----HhcCCHHHHHHHHhh-
Q 044131 297 RLFRQLLASAERVNSSTIVGLIPVFYPFGHLHLTNCIHSFCLKSGIVSNSSVLTALSTVY----SRLNEMEAARKLFDE- 371 (784)
Q Consensus 297 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~i~~~~~~~g~~~~~~~~~~Li~~y----~~~g~~~~A~~~f~~- 371 (784)
++++.+.+.|+.|..+++..++..++..=.++.+..+++.....|...-..+.-+++..+ .++.+.++....+..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~~ 288 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKST 288 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHHT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhh
Confidence 466677778899998999999998888878899999999998888664444555555433 234566666666665
Q ss_pred cCCCChhHHHHHH
Q 044131 372 SSEKSLASWNAMI 384 (784)
Q Consensus 372 ~~~~~~~~~~~li 384 (784)
++..+......+|
T Consensus 289 ~p~~~~~di~~li 301 (331)
T 3qye_A 289 LPNLGLVQMEKTI 301 (331)
T ss_dssp TTCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 3333333333333
No 318
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=21.12 E-value=1.2e+02 Score=28.30 Aligned_cols=76 Identities=13% Similarity=0.072 Sum_probs=50.6
Q ss_pred HHHHHHHHhCC-CCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHhc--CCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 044131 566 EKALEFIKGLA-VEPGPA---VWGALLGACMIHKDTNLARVASEKLFE--LDPENVGYHVLLSNIYSAERDYLQAATVRQ 639 (784)
Q Consensus 566 ~eA~~~~~~m~-~~p~~~---~~~~ll~a~~~~g~~~~a~~~~~~~~~--l~p~~~~~~~~l~~~y~~~g~~~~a~~~~~ 639 (784)
+.+...|...+ .+-|+- +|-.++..| +....+|+.+.. +.-..+..|...+..|...|+|.+|.+|++
T Consensus 101 Erc~~~F~~~~rYknD~RyLklWl~Ya~~~------~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~ 174 (223)
T 4aez_C 101 ERCTREFVRNPLYKDDVRYLRIWMQYVNYI------DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQ 174 (223)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHTTC------SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHHHHcc------CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33444444432 444544 555544422 355567777764 556778899999999999999999999998
Q ss_pred HHHhCCCc
Q 044131 640 VVKKRKLA 647 (784)
Q Consensus 640 ~m~~~~~~ 647 (784)
.-.+++.+
T Consensus 175 ~Gi~~~A~ 182 (223)
T 4aez_C 175 KGKRMKAK 182 (223)
T ss_dssp HHHHHTCB
T ss_pred HHHHcCCc
Confidence 76665543
No 319
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=20.54 E-value=79 Score=24.54 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHHHHHHHcCcccCCCccccccchHHHHhhhhhHHHHHHHHHh
Q 044131 673 QSTAIYAMLEKLNGKMREAGFQTETVTALHDVEEEEKELMMKVHSEKLAIAFG 725 (784)
Q Consensus 673 ~~~~i~~~l~~l~~~~~~~g~~~~~~~~~~~~~~~~k~~~~~~hse~la~~~~ 725 (784)
...+|...+++-..+++..||.||...+ ..| ...+-+|-+-.-||
T Consensus 14 dlirIl~~ieekinELk~dG~ePDIiL~----G~e----ayef~~e~v~~e~g 58 (103)
T 2pk8_A 14 DLIRILGEIEEKMNELKMDGFNPDIILF----GRE----AYNFLSNLLKKEME 58 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEEEE----CHH----HHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCeEEE----cHH----HHHHHHHHHhHhhc
Confidence 3467888888888999999999998664 222 23344555555555
No 320
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=20.48 E-value=1.9e+02 Score=27.20 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=18.9
Q ss_pred CCcchHHHHHHHHHhcCCHHHHHHHHH
Q 044131 547 PLAEHYACMVDILGRAGQLEKALEFIK 573 (784)
Q Consensus 547 p~~~~~~~lv~~l~r~g~~~eA~~~~~ 573 (784)
++.......+..|.|.|+.++|.++|-
T Consensus 89 ~~~~~~r~~v~~L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 89 NEIVHLKSGTENMIKLGLPEQALDLFL 115 (235)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCChhHHHHHHH
Confidence 344455566777888888888887763
No 321
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.46 E-value=2.9e+02 Score=23.83 Aligned_cols=62 Identities=18% Similarity=0.236 Sum_probs=39.4
Q ss_pred HhHHHHHHHhcCCHHHHHHHHhhcCCCC---HHHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCC
Q 044131 450 STALIDMYAKCGNIVEARELFDLMSHKS---EVTWNTMISGYGLHGH--GLEALQLFSEMLHSGIRP 511 (784)
Q Consensus 450 ~~~Li~~y~k~g~~~~A~~~f~~~~~~~---~~~~~~li~~~~~~g~--~~~A~~~~~~m~~~g~~p 511 (784)
.+.++.-|...|+.++|.+.++++..|. .+...++..++-+.++ .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4567788888888888888888887653 2344455555554322 344666677776665433
No 322
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=20.05 E-value=1.7e+02 Score=29.25 Aligned_cols=17 Identities=12% Similarity=0.083 Sum_probs=9.1
Q ss_pred HHHhcCChHHHHHHHhc
Q 044131 254 FYSKCGEVERAELLFRD 270 (784)
Q Consensus 254 ~y~~~g~~~~A~~~f~~ 270 (784)
..+..|+.+-+..+++.
T Consensus 179 ~A~~~g~~~~v~~Ll~~ 195 (364)
T 3ljn_A 179 RAMEFRNREALDLMMDT 195 (364)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 34455666655555543
Done!