BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044133
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 137 bits (345), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 166/355 (46%), Gaps = 45/355 (12%)
Query: 1 MGRLRNLVHLDLSNNHLTGHIPPTLGRXXXXXXXXXXXXXXVGNVPXXXXXXXXXXXXAI 60
+G L HLD+S N L+G + VG +P ++
Sbjct: 216 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP--PLPLKSLQYLSL 273
Query: 61 ASNQINGSIPLEIEN-LKVLHVLDLSRNEIGGSIPSTIG--------------------- 98
A N+ G IP + L LDLS N G++P G
Sbjct: 274 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 333
Query: 99 ----HLKRLRILDLSQNKLVGPIPSSVGPLT-QLTTLNMHSNRINGSIPLEIGNL----- 148
++ L++LDLS N+ G +P S+ L+ L TL++ SN +G I + NL
Sbjct: 334 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI---LPNLCQNPK 390
Query: 149 NFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENK 208
N LQ L L +N G IP T+++ L SL L +N L G IPS+LG L++L DL L N
Sbjct: 391 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 450
Query: 209 LVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGS 268
L G IP + ++ L+ L L D +D L G IP L NC+ L + L NN L+G
Sbjct: 451 LEGEIPQELMYVKTLETLIL------DFND--LTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 269 IPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFVRK 323
IP IG+L+ L L LS NS +G IP +LG + +DL+ N +G IP + K
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 557
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 157/324 (48%), Gaps = 17/324 (5%)
Query: 4 LRNLVHLDLSNNHLTGHIPPTL-GRXXXXXXXXXXXXXXVGNVPXXXXXXXXXXXXAIAS 62
L++L +L L+ N TG IP L G G VP A++S
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 63 NQINGSIPLE-IENLKVLHVLDLSRNEIGGSIPSTIGHLK-RLRILDLSQNKLVGPIPSS 120
N +G +P++ + ++ L VLDLS NE G +P ++ +L L LDLS N GPI +
Sbjct: 325 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 384
Query: 121 V--GPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSL 178
+ P L L + +N G IP + N + L L LS N L G IPS++ SL L+ L
Sbjct: 385 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 444
Query: 179 SLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSD 238
L N L G IP L ++ L L L N L G IPS + + L + LSNN+L
Sbjct: 445 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT---- 500
Query: 239 NKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLG 298
G IP + L L L NN SG+IP+++G + L +LDL+ N NG IP +
Sbjct: 501 ----GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 556
Query: 299 AIPGIHTVDLSMNNLSGGIPVFVR 322
G ++ N ++G V+++
Sbjct: 557 KQSG----KIAANFIAGKRYVYIK 576
Score = 125 bits (315), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 163/381 (42%), Gaps = 44/381 (11%)
Query: 3 RLRNLVHLDLSNNHLTGHIPPTLGRXXXXXXXXXXXXXXVGN--VPXXXXX-XXXXXXXA 59
++R L LDLS N +G +P +L +P
Sbjct: 338 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 397
Query: 60 IASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPS 119
+ +N G IP + N L L LS N + G+IPS++G L +LR L L N L G IP
Sbjct: 398 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 457
Query: 120 SVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLS 179
+ + L TL + N + G IP + N L + LS+N+L G IP I L NL L
Sbjct: 458 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 517
Query: 180 LHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSV---------------------- 217
L N+ G IP+ LG L LDL+ N G IP+++
Sbjct: 518 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 577
Query: 218 --------GHLNFLQDLDLSNNKLEDLSDNK--------LDGPIPPELMNCSKLTTLILG 261
G N L+ + + +L LS G P N + L +
Sbjct: 578 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 637
Query: 262 NNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFV 321
N+LSG IP +IG + L L+L N I+G IP ++G + G++ +DLS N L G IP +
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 322 RKVPHL---DVSGNKFGGEIP 339
+ L D+S N G IP
Sbjct: 698 SALTMLTEIDLSNNNLSGPIP 718
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 120/419 (28%), Positives = 168/419 (40%), Gaps = 85/419 (20%)
Query: 2 GRLRNLVHLDLSNNHLTGHIPPTLGRXXXXXXXXXXXXXXVGNVPXXXXXXXX-XXXXAI 60
G L LDLS NH G +PP G G +P +
Sbjct: 288 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 347
Query: 61 ASNQINGSIPLEIENLKV-LHVLDLSRNEIGG--------------------------SI 93
+ N+ +G +P + NL L LDLS N G I
Sbjct: 348 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 407
Query: 94 PSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQV 153
P T+ + L L LS N L G IPSS+G L++L L + N + G IP E+ + L+
Sbjct: 408 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 467
Query: 154 LGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPI 213
L L N L G IPS +++ NL +SL N L G IP +G L L L LS N G I
Sbjct: 468 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 527
Query: 214 PSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSK--LTTLILGN--------- 262
P+ +G L LDL+ N +G IP + S I G
Sbjct: 528 PAELGDCRSLIWLDLNT--------NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 579
Query: 263 ---------NLLS--GSIPSQIGKLQ------------------------KLCYLDLSGN 287
NLL G Q+ +L + +LD+S N
Sbjct: 580 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 639
Query: 288 SINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFV---RKVPHLDVSGNKFGGEIPTTLA 343
++G IP ++G++P + ++L N++SG IP V R + LD+S NK G IP ++
Sbjct: 640 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 143/348 (41%), Gaps = 86/348 (24%)
Query: 76 LKVLHVLDLSRNEIGGS------IPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTT 129
L L VLDLS N I G+ + G LK L I S NK+ G + V L
Sbjct: 147 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDV--DVSRCVNLEF 201
Query: 130 LNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPI 189
L++ SN + IP +G+ + LQ L +S NKL G I++ LK L++ N +GPI
Sbjct: 202 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 260
Query: 190 PSTLGHLNRLTDLDLSENKLVGPIPSSV-GHLNFLQDLDLSNN----------------- 231
P L L L L+ENK G IP + G + L LDLS N
Sbjct: 261 PPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 232 ------------------------KLEDLSDNKLDGPIPPELMNCSK------------- 254
K+ DLS N+ G +P L N S
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 255 --------------LTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAI 300
L L L NN +G IP + +L L LS N ++G IP LG++
Sbjct: 379 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 301 PGIHTVDLSMNNLSGGIP---VFVRKVPHLDVSGNKFGGEIPTTLANA 345
+ + L +N L G IP ++V+ + L + N GEIP+ L+N
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 486
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 142/296 (47%), Gaps = 49/296 (16%)
Query: 84 LSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIP--SSVGPLTQLTTLNMHSN------ 135
LS + I GS+ S L LDLS+N L GP+ +S+G + L LN+ SN
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 136 RINGSIP---LEIGNLNF-------------------LQVLGLSDNKLEGPIPSTIASLV 173
+++G + LE+ +L+ L+ L +S NK+ G + ++ V
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV 197
Query: 174 NLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKL 233
NL+ L + NN IP LG + L LD+S NKL G ++ L KL
Sbjct: 198 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTEL--------KL 248
Query: 234 EDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQI-GKLQKLCYLDLSGNSINGK 292
++S N+ GPIPP + L L L N +G IP + G L LDLSGN G
Sbjct: 249 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 293 IPYQLGAIPGIHTVDLSMNNLSGGIPV----FVRKVPHLDVSGNKFGGEIPTTLAN 344
+P G+ + ++ LS NN SG +P+ +R + LD+S N+F GE+P +L N
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 362
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 98/240 (40%), Gaps = 54/240 (22%)
Query: 1 MGRLRNLVHLDLSNNHLTGHIPPTLGRXXXXXXXXXXXXXXVGNVPXXXXXXXXXXXXAI 60
+GRL NL L LSNN +G+IP LG G +P I
Sbjct: 507 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KI 562
Query: 61 ASNQINGSIPLEIEN--------------------------LKVLHVLDLSRNEIGGSIP 94
A+N I G + I+N L + +++ GG
Sbjct: 563 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 622
Query: 95 STIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVL 154
T + + LD+S N L G IP +G + L LN+ N I+GSIP E+G+L L +L
Sbjct: 623 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 682
Query: 155 GLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIP 214
LS NKL+G IP +++L LT++DLS N L GPIP
Sbjct: 683 DLSSNKLDGRIPQAMSALT------------------------MLTEIDLSNNNLSGPIP 718
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 27/213 (12%)
Query: 156 LSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPS--TLGHLNRLTDLDLSENKLVGPI 213
LS++ + G + S +L SL L N+L GP+ + +LG + L L++S N L P
Sbjct: 81 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 139
Query: 214 PSSVG-HLNFLQDLDLSNNKLED-------------------LSDNKLDGPIPPELMNCS 253
S G LN L+ LDLS N + +S NK+ G + ++ C
Sbjct: 140 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV 197
Query: 254 KLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNL 313
L L + +N S IP +G L +LD+SGN ++G + + +++S N
Sbjct: 198 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 256
Query: 314 SGGIPVF-VRKVPHLDVSGNKFGGEIPTTLANA 345
G IP ++ + +L ++ NKF GEIP L+ A
Sbjct: 257 VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGA 289
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 137 bits (345), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/355 (33%), Positives = 166/355 (46%), Gaps = 45/355 (12%)
Query: 1 MGRLRNLVHLDLSNNHLTGHIPPTLGRXXXXXXXXXXXXXXVGNVPXXXXXXXXXXXXAI 60
+G L HLD+S N L+G + VG +P ++
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP--PLPLKSLQYLSL 276
Query: 61 ASNQINGSIPLEIEN-LKVLHVLDLSRNEIGGSIPSTIG--------------------- 98
A N+ G IP + L LDLS N G++P G
Sbjct: 277 AENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336
Query: 99 ----HLKRLRILDLSQNKLVGPIPSSVGPLT-QLTTLNMHSNRINGSIPLEIGNL----- 148
++ L++LDLS N+ G +P S+ L+ L TL++ SN +G I + NL
Sbjct: 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI---LPNLCQNPK 393
Query: 149 NFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENK 208
N LQ L L +N G IP T+++ L SL L +N L G IPS+LG L++L DL L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 209 LVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGS 268
L G IP + ++ L+ L L D +D L G IP L NC+ L + L NN L+G
Sbjct: 454 LEGEIPQELMYVKTLETLIL------DFND--LTGEIPSGLSNCTNLNWISLSNNRLTGE 505
Query: 269 IPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFVRK 323
IP IG+L+ L L LS NS +G IP +LG + +DL+ N +G IP + K
Sbjct: 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560
Score = 130 bits (326), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 109/324 (33%), Positives = 157/324 (48%), Gaps = 17/324 (5%)
Query: 4 LRNLVHLDLSNNHLTGHIPPTL-GRXXXXXXXXXXXXXXVGNVPXXXXXXXXXXXXAIAS 62
L++L +L L+ N TG IP L G G VP A++S
Sbjct: 268 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 327
Query: 63 NQINGSIPLE-IENLKVLHVLDLSRNEIGGSIPSTIGHLK-RLRILDLSQNKLVGPIPSS 120
N +G +P++ + ++ L VLDLS NE G +P ++ +L L LDLS N GPI +
Sbjct: 328 NNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387
Query: 121 V--GPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSL 178
+ P L L + +N G IP + N + L L LS N L G IPS++ SL L+ L
Sbjct: 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDL 447
Query: 179 SLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSD 238
L N L G IP L ++ L L L N L G IPS + + L + LSNN+L
Sbjct: 448 KLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT---- 503
Query: 239 NKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLG 298
G IP + L L L NN SG+IP+++G + L +LDL+ N NG IP +
Sbjct: 504 ----GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559
Query: 299 AIPGIHTVDLSMNNLSGGIPVFVR 322
G ++ N ++G V+++
Sbjct: 560 KQSG----KIAANFIAGKRYVYIK 579
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 115/381 (30%), Positives = 163/381 (42%), Gaps = 44/381 (11%)
Query: 3 RLRNLVHLDLSNNHLTGHIPPTLGRXXXXXXXXXXXXXXVGN--VPXXXXX-XXXXXXXA 59
++R L LDLS N +G +P +L +P
Sbjct: 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY 400
Query: 60 IASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPS 119
+ +N G IP + N L L LS N + G+IPS++G L +LR L L N L G IP
Sbjct: 401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460
Query: 120 SVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLS 179
+ + L TL + N + G IP + N L + LS+N+L G IP I L NL L
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK 520
Query: 180 LHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSV---------------------- 217
L N+ G IP+ LG L LDL+ N G IP+++
Sbjct: 521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580
Query: 218 --------GHLNFLQDLDLSNNKLEDLSDNK--------LDGPIPPELMNCSKLTTLILG 261
G N L+ + + +L LS G P N + L +
Sbjct: 581 DGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMS 640
Query: 262 NNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFV 321
N+LSG IP +IG + L L+L N I+G IP ++G + G++ +DLS N L G IP +
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 322 RKVPHL---DVSGNKFGGEIP 339
+ L D+S N G IP
Sbjct: 701 SALTMLTEIDLSNNNLSGPIP 721
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 120/419 (28%), Positives = 168/419 (40%), Gaps = 85/419 (20%)
Query: 2 GRLRNLVHLDLSNNHLTGHIPPTLGRXXXXXXXXXXXXXXVGNVPXXXXXXXX-XXXXAI 60
G L LDLS NH G +PP G G +P +
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350
Query: 61 ASNQINGSIPLEIENLKV-LHVLDLSRNEIGG--------------------------SI 93
+ N+ +G +P + NL L LDLS N G I
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Query: 94 PSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQV 153
P T+ + L L LS N L G IPSS+G L++L L + N + G IP E+ + L+
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470
Query: 154 LGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPI 213
L L N L G IPS +++ NL +SL N L G IP +G L L L LS N G I
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI 530
Query: 214 PSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSK--LTTLILGN--------- 262
P+ +G L LDL+ N +G IP + S I G
Sbjct: 531 PAELGDCRSLIWLDLNT--------NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDG 582
Query: 263 ---------NLLS--GSIPSQIGKLQ------------------------KLCYLDLSGN 287
NLL G Q+ +L + +LD+S N
Sbjct: 583 MKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYN 642
Query: 288 SINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFV---RKVPHLDVSGNKFGGEIPTTLA 343
++G IP ++G++P + ++L N++SG IP V R + LD+S NK G IP ++
Sbjct: 643 MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Score = 98.2 bits (243), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 143/348 (41%), Gaps = 86/348 (24%)
Query: 76 LKVLHVLDLSRNEIGGS------IPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTT 129
L L VLDLS N I G+ + G LK L I S NK+ G + V L
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAI---SGNKISGDV--DVSRCVNLEF 204
Query: 130 LNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPI 189
L++ SN + IP +G+ + LQ L +S NKL G I++ LK L++ N +GPI
Sbjct: 205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPI 263
Query: 190 PSTLGHLNRLTDLDLSENKLVGPIPSSV-GHLNFLQDLDLSNN----------------- 231
P L L L L+ENK G IP + G + L LDLS N
Sbjct: 264 PPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 232 ------------------------KLEDLSDNKLDGPIPPELMNCSK------------- 254
K+ DLS N+ G +P L N S
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 255 --------------LTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAI 300
L L L NN +G IP + +L L LS N ++G IP LG++
Sbjct: 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 301 PGIHTVDLSMNNLSGGIP---VFVRKVPHLDVSGNKFGGEIPTTLANA 345
+ + L +N L G IP ++V+ + L + N GEIP+ L+N
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNC 489
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 142/296 (47%), Gaps = 49/296 (16%)
Query: 84 LSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIP--SSVGPLTQLTTLNMHSN------ 135
LS + I GS+ S L LDLS+N L GP+ +S+G + L LN+ SN
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 136 RINGSIP---LEIGNLNF-------------------LQVLGLSDNKLEGPIPSTIASLV 173
+++G + LE+ +L+ L+ L +S NK+ G + ++ V
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV 200
Query: 174 NLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKL 233
NL+ L + NN IP LG + L LD+S NKL G ++ L KL
Sbjct: 201 NLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTEL--------KL 251
Query: 234 EDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQI-GKLQKLCYLDLSGNSINGK 292
++S N+ GPIPP + L L L N +G IP + G L LDLSGN G
Sbjct: 252 LNISSNQFVGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 293 IPYQLGAIPGIHTVDLSMNNLSGGIPV----FVRKVPHLDVSGNKFGGEIPTTLAN 344
+P G+ + ++ LS NN SG +P+ +R + LD+S N+F GE+P +L N
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365
Score = 82.0 bits (201), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 71/240 (29%), Positives = 98/240 (40%), Gaps = 54/240 (22%)
Query: 1 MGRLRNLVHLDLSNNHLTGHIPPTLGRXXXXXXXXXXXXXXVGNVPXXXXXXXXXXXXAI 60
+GRL NL L LSNN +G+IP LG G +P I
Sbjct: 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG----KI 565
Query: 61 ASNQINGSIPLEIEN--------------------------LKVLHVLDLSRNEIGGSIP 94
A+N I G + I+N L + +++ GG
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 625
Query: 95 STIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVL 154
T + + LD+S N L G IP +G + L LN+ N I+GSIP E+G+L L +L
Sbjct: 626 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNIL 685
Query: 155 GLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIP 214
LS NKL+G IP +++L LT++DLS N L GPIP
Sbjct: 686 DLSSNKLDGRIPQAMSALT------------------------MLTEIDLSNNNLSGPIP 721
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 102/213 (47%), Gaps = 27/213 (12%)
Query: 156 LSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPS--TLGHLNRLTDLDLSENKLVGPI 213
LS++ + G + S +L SL L N+L GP+ + +LG + L L++S N L P
Sbjct: 84 LSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPG 142
Query: 214 PSSVG-HLNFLQDLDLSNNKLE-------------------DLSDNKLDGPIPPELMNCS 253
S G LN L+ LDLS N + +S NK+ G + ++ C
Sbjct: 143 KVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCV 200
Query: 254 KLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNL 313
L L + +N S IP +G L +LD+SGN ++G + + +++S N
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 314 SGGIPVF-VRKVPHLDVSGNKFGGEIPTTLANA 345
G IP ++ + +L ++ NKF GEIP L+ A
Sbjct: 260 VGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGA 292
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 121/229 (52%), Gaps = 14/229 (6%)
Query: 93 IPSTIGHLKRLRILDLSQ-NKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFL 151
IPS++ +L L L + N LVGPIP ++ LTQL L + ++G+IP + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 152 QVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRL-TDLDLSENKLV 210
L S N L G +P +I+SL NL ++ N + G IP + G ++L T + +S N+L
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 211 GPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLI-LGNNLLSGSI 269
G IP + +LN L +DLS N LE D + L K T I L N L+ +
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEG------DASV---LFGSDKNTQKIHLAKNSLAFDL 237
Query: 270 PSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP 318
++G + L LDL N I G +P L + +H++++S NNL G IP
Sbjct: 238 -GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 72/218 (33%), Positives = 101/218 (46%), Gaps = 12/218 (5%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVG 122
N + G IP I L LH L ++ + G+IP + +K L LD S N L G +P S+
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 123 PLTQLTTLNMHSNRINGSIPLEIGNLN-FLQVLGLSDNKLEGPIPSTIASLVNLKSLSLH 181
L L + NRI+G+IP G+ + + +S N+L G IP T A+L NL + L
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLS 205
Query: 182 YNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKL 241
N L G G + L++N L + VG L LDL NN++
Sbjct: 206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIY------- 257
Query: 242 DGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKL 279
G +P L L +L + N L G IP Q G LQ+
Sbjct: 258 -GTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRF 293
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/185 (29%), Positives = 93/185 (50%), Gaps = 15/185 (8%)
Query: 166 PSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGP--IPSSVGHLNFL 223
P+T++S L + +G + T R+ +LDLS L P IPSS+ +L +L
Sbjct: 21 PTTLSSW--LPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78
Query: 224 QDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLD 283
L + N L GPIPP + ++L L + + +SG+IP + +++ L LD
Sbjct: 79 NFLYIG-------GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131
Query: 284 LSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP----VFVRKVPHLDVSGNKFGGEIP 339
S N+++G +P + ++P + + N +SG IP F + + +S N+ G+IP
Sbjct: 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191
Query: 340 TTLAN 344
T AN
Sbjct: 192 PTFAN 196
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 3/167 (1%)
Query: 1 MGRLRNLVHLDLSNNHLTGHIPPTLGRXXXXXXXXXXXXXXVGNVPXXX-XXXXXXXXXA 59
+ +++ LV LD S N L+G +PP++ G +P
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 60 IASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPS 119
I+ N++ G IP NL + V DLSRN + G G K + + L++N L +
Sbjct: 181 ISRNRLTGKIPPTFANLNLAFV-DLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-G 238
Query: 120 SVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIP 166
VG L L++ +NRI G++P + L FL L +S N L G IP
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 60 IASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLV--GPI 117
+ +N+I G++P + LK LH L++S N + G IP G+L+R + + NK + P+
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPL 309
Query: 118 PSSV 121
P+
Sbjct: 310 PACT 313
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 87/198 (43%), Gaps = 14/198 (7%)
Query: 92 SIPSTI-GHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEI-GNLN 149
+IPS I K+L DL NKL + LT+L L ++ N++ ++P I L
Sbjct: 30 AIPSNIPADTKKL---DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELK 85
Query: 150 FLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKL 209
L+ L ++DNKL+ LVNL L L N L P L +LT L L N+L
Sbjct: 86 NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL 145
Query: 210 VGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSI 269
L L++L L NN+L+ + + D ++L TL L NN L
Sbjct: 146 QSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD--------KLTELKTLKLDNNQLKRVP 197
Query: 270 PSQIGKLQKLCYLDLSGN 287
L+KL L L N
Sbjct: 198 EGAFDSLEKLKMLQLQEN 215
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 43/105 (40%)
Query: 79 LHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRIN 138
L L L RN++ P L +L L L N+L LT L L +++N++
Sbjct: 111 LAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170
Query: 139 GSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYN 183
L L+ L L +N+L+ SL LK L L N
Sbjct: 171 RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 42/97 (43%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVG 122
NQ+ P ++L L L L NE+ L L+ L L N+L +
Sbjct: 119 NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFD 178
Query: 123 PLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDN 159
LT+L TL + +N++ +L L++L L +N
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 88/211 (41%), Gaps = 39/211 (18%)
Query: 106 LDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPI 165
+D S KL IPS++ T+ L++ SN+++ L L++L L+DNKL+
Sbjct: 21 VDCSSKKLTA-IPSNIPADTK--KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77
Query: 166 PSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQD 225
L NL++L + N L +P +G ++L +L +
Sbjct: 78 AGIFKELKNLETLWVTDNKLQA-LP--IGVFDQLVNL---------------------AE 113
Query: 226 LDLSNNKLEDLSDNKLDGPIPPELMNC-SKLTTLILGNNLLSGSIPSQIGKLQKLCYLDL 284
L L N+L+ L PP + + +KLT L LG N L KL L L L
Sbjct: 114 LRLDRNQLKSL---------PPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164
Query: 285 SGNSINGKIPY-QLGAIPGIHTVDLSMNNLS 314
N + ++P + + T+ L N L
Sbjct: 165 YNNQLK-RVPEGAFDKLTELKTLKLDNNQLK 194
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 111/261 (42%), Gaps = 63/261 (24%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVG 122
NQI PL NL L L L N+I P + +L L L+LS N + S++
Sbjct: 95 NQIADITPLA--NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALS 148
Query: 123 PLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHY 182
LT L LN SN++ PL NL L+ L +S NK+ S +A L NL+SL +
Sbjct: 149 GLTSLQQLNFSSNQVTDLKPL--ANLTTLERLDISSNKVSDI--SVLAKLTNLESL-IAT 203
Query: 183 NNLIGPIP---------------------STLGHLNRLTDLDLSENKLVGPIP------- 214
NN I I TL L LTDLDL+ N++ P
Sbjct: 204 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKL 263
Query: 215 -------------SSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILG 261
S + L L +L+L+ N+LED+S PI N LT L L
Sbjct: 264 TELKLGANQISNISPLAGLTALTNLELNENQLEDIS------PIS----NLKNLTYLTLY 313
Query: 262 NNLLSGSIP-SQIGKLQKLCY 281
N +S P S + KLQ+L +
Sbjct: 314 FNNISDISPVSSLTKLQRLFF 334
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 103/235 (43%), Gaps = 49/235 (20%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVG 122
NQI+ PL I L L L L+ N++ T+ L L LDL+ N++ P +
Sbjct: 205 NQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LS 258
Query: 123 PLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHY 182
LT+LT L + +N+I+ PL L L L L++N+LE P I++L NL L+L++
Sbjct: 259 GLTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 314
Query: 183 NNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLD 242
NN+ P V L LQ L NNK+ D+S
Sbjct: 315 NNISDISP--------------------------VSSLTKLQRLFFYNNKVSDVS----- 343
Query: 243 GPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSI-NGKIPYQ 296
L N + + L G+N +S P + L ++ L L+ + N + Y+
Sbjct: 344 -----SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYK 391
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 19/131 (14%)
Query: 217 VGHLNFLQDLDLSNNKLEDLS-------------DNKLDGPIPPELMNCSKLTTLILGNN 263
V +LN L ++ SNN+L D++ +N I P L N + LT L L NN
Sbjct: 59 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 117
Query: 264 LLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVF-VR 322
++ P + L L L+LS N+I+ L + + ++ S N ++ P+ +
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLNFSSNQVTDLKPLANLT 173
Query: 323 KVPHLDVSGNK 333
+ LD+S NK
Sbjct: 174 TLERLDISSNK 184
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 69/285 (24%), Positives = 119/285 (41%), Gaps = 35/285 (12%)
Query: 73 IENLKVLHVLDLSRNEIGG-SIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLT--QLTT 129
NLK L LDLS+N+I + + G L L+ +D S N++ + PL L+
Sbjct: 119 FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF 178
Query: 130 LNMHSNRINGSIPLEIGNLN------FLQVLGLSDNKLEGPIPSTIASLVNLKSLSLH-- 181
++ +N + + ++ G L++L +S N I ++ ++ KS +
Sbjct: 179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAIS-KSQAFSLI 237
Query: 182 -----------YNNLIGPIPSTLGHLNR--LTDLDLSENKLVGPIPSSVGHLNFLQDLDL 228
++N+ P +T L R + LDLS + L L+ L+L
Sbjct: 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL 297
Query: 229 SNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNS 288
+ NK+ ++D G +++N L NLL S L K+ Y+DL N
Sbjct: 298 AYNKINKIADEAFYGLDNLQVLN--------LSYNLLGELYSSNFYGLPKVAYIDLQKNH 349
Query: 289 INGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFVRKVPHLDVSGNK 333
I + + T+DL N L+ F+ +P + +SGNK
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNALT--TIHFIPSIPDIFLSGNK 392
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 85/216 (39%), Gaps = 32/216 (14%)
Query: 83 DLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIP 142
D +N G S++ HL DLS + L L LN+ N+IN
Sbjct: 254 DPDQNTFAGLARSSVRHL------DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307
Query: 143 LEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDL 202
L+ LQVL LS N L S L + + L N++ T L +L L
Sbjct: 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367
Query: 203 DLSENKL--VGPIPSSVGHLNFLQDLDLSNNKLED------------LSDNKLDG-PIPP 247
DL +N L + IPS + D+ LS NKL LS+N+L+ I
Sbjct: 368 DLRDNALTTIHFIPS-------IPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILY 420
Query: 248 ELMNCSKLTTLILGNNLLSGS----IPSQIGKLQKL 279
L+ L LIL N S PS+ L++L
Sbjct: 421 FLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 61/204 (29%), Positives = 88/204 (43%), Gaps = 33/204 (16%)
Query: 77 KVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKL--VGPIPS------SVGPLTQLT 128
KV ++ DL +N I T L++L+ LDL N L + IPS S L L
Sbjct: 339 KVAYI-DLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397
Query: 129 TLNMHSNRINGSIPLEIGNLNFL---------QVLGLSDNKLEG----PIPSTIASLVNL 175
+N+ +N I+ S + NL+ L Q+L L+ N+ PS SL L
Sbjct: 398 KINLTANLIHLS-ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQL 456
Query: 176 ----KSLSLHYN-NLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSN 230
L L + L + L HL L L+ N L P HL L+ L L++
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLY---LNHNYLNSLPPGVFSHLTALRGLSLNS 513
Query: 231 NKLEDLSDNKLDGPIPPELMNCSK 254
N+L LS N L P E+++ S+
Sbjct: 514 NRLTVLSHNDL--PANLEILDISR 535
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 115/243 (47%), Gaps = 49/243 (20%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVG 122
NQI PL+ NL L+ L+LS N I S S + L L+ L S N++ P +
Sbjct: 117 NQITDIDPLK--NLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDLKP--LA 170
Query: 123 PLTQLTTLNMHSNRING-SIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLH 181
LT L L++ SN+++ S+ ++ NL + L ++N++ P + L NL LSL+
Sbjct: 171 NLTTLERLDISSNKVSDISVLAKLTNL---ESLIATNNQISDITP--LGILTNLDELSLN 225
Query: 182 YNNL--IGPIPSTLGHLNRLTDLDLSENKLVGPIP--------------------SSVGH 219
N L IG TL L LTDLDL+ N++ P S +
Sbjct: 226 GNQLKDIG----TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 281
Query: 220 LNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIP-SQIGKLQK 278
L L +L+L+ N+LED+S PI N LT L L N +S P S + KLQ+
Sbjct: 282 LTALTNLELNENQLEDIS------PIS----NLKNLTYLTLYFNNISDISPVSSLTKLQR 331
Query: 279 LCY 281
L +
Sbjct: 332 LFF 334
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 117/262 (44%), Gaps = 51/262 (19%)
Query: 59 AIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIP 118
+ +SNQ+ PL NL L LD+S N++ S S + L L L + N++ P
Sbjct: 157 SFSSNQVTDLKPLA--NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP 212
Query: 119 SSVGPLTQLTTLNMHSNRINGSIPLEIG---NLNFLQVLGLSDNKLEGPIPSTIASLVNL 175
+G LT L L+++ N++ +IG +L L L L++N++ P ++ L L
Sbjct: 213 --LGILTNLDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 263
Query: 176 KSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKL--VGPIP------------------S 215
L L N + P L L LT+L+L+EN+L + PI S
Sbjct: 264 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 321
Query: 216 SVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGK 275
V L LQ L SNNK+ D+S L N + + L G+N +S P +
Sbjct: 322 PVSSLTKLQRLFFSNNKVSDVS----------SLANLTNINWLSAGHNQISDLTP--LAN 369
Query: 276 LQKLCYLDLSGNSI-NGKIPYQ 296
L ++ L L+ + N + Y+
Sbjct: 370 LTRITQLGLNDQAWTNAPVNYK 391
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 217 VGHLNFLQDLDLSNNKLEDLS-------------DNKLDGPIPPELMNCSKLTTLILGNN 263
V +LN L ++ SNN+L D++ +N I P L N + LT L L NN
Sbjct: 59 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 117
Query: 264 LLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVF-VR 322
++ P + L L L+LS N+I+ L + + + S N ++ P+ +
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKPLANLT 173
Query: 323 KVPHLDVSGNKFG 335
+ LD+S NK
Sbjct: 174 TLERLDISSNKVS 186
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 115/243 (47%), Gaps = 49/243 (20%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVG 122
NQI PL+ NL L+ L+LS N I S S + L L+ L S N++ P +
Sbjct: 117 NQITDIDPLK--NLTNLNRLELSSNTI--SDISALSGLTSLQQLSFSSNQVTDLKP--LA 170
Query: 123 PLTQLTTLNMHSNRING-SIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLH 181
LT L L++ SN+++ S+ ++ NL + L ++N++ P + L NL LSL+
Sbjct: 171 NLTTLERLDISSNKVSDISVLAKLTNL---ESLIATNNQISDITP--LGILTNLDELSLN 225
Query: 182 YNNL--IGPIPSTLGHLNRLTDLDLSENKLVGPIP--------------------SSVGH 219
N L IG TL L LTDLDL+ N++ P S +
Sbjct: 226 GNQLKDIG----TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 281
Query: 220 LNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIP-SQIGKLQK 278
L L +L+L+ N+LED+S PI N LT L L N +S P S + KLQ+
Sbjct: 282 LTALTNLELNENQLEDIS------PIS----NLKNLTYLTLYFNNISDISPVSSLTKLQR 331
Query: 279 LCY 281
L +
Sbjct: 332 LFF 334
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/262 (27%), Positives = 116/262 (44%), Gaps = 51/262 (19%)
Query: 59 AIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIP 118
+ +SNQ+ PL NL L LD+S N++ S S + L L L + N++ P
Sbjct: 157 SFSSNQVTDLKPLA--NLTTLERLDISSNKV--SDISVLAKLTNLESLIATNNQISDITP 212
Query: 119 SSVGPLTQLTTLNMHSNRINGSIPLEIG---NLNFLQVLGLSDNKLEGPIPSTIASLVNL 175
+G LT L L+++ N++ +IG +L L L L++N++ P ++ L L
Sbjct: 213 --LGILTNLDELSLNGNQLK-----DIGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 263
Query: 176 KSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKL--VGPIP------------------S 215
L L N + P L L LT+L+L+EN+L + PI S
Sbjct: 264 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 321
Query: 216 SVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGK 275
V L LQ L NNK+ D+S L N + + L G+N +S P +
Sbjct: 322 PVSSLTKLQRLFFYNNKVSDVS----------SLANLTNINWLSAGHNQISDLTP--LAN 369
Query: 276 LQKLCYLDLSGNSI-NGKIPYQ 296
L ++ L L+ + N + Y+
Sbjct: 370 LTRITQLGLNDQAWTNAPVNYK 391
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 19/131 (14%)
Query: 217 VGHLNFLQDLDLSNNKLEDLS-------------DNKLDGPIPPELMNCSKLTTLILGNN 263
V +LN L ++ SNN+L D++ +N I P L N + LT L L NN
Sbjct: 59 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 117
Query: 264 LLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVF-VR 322
++ P + L L L+LS N+I+ L + + + S N ++ P+ +
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFSSNQVTDLKPLANLT 173
Query: 323 KVPHLDVSGNK 333
+ LD+S NK
Sbjct: 174 TLERLDISSNK 184
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 3/124 (2%)
Query: 79 LHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRIN 138
+ DLS+++I + S H L L L+QN++ ++ LT L LN+ N +
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 139 GSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNR 198
NL+ L+VL LS N + + L NLK L+L N L +P G +R
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-KSVPD--GIFDR 393
Query: 199 LTDL 202
LT L
Sbjct: 394 LTSL 397
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/252 (24%), Positives = 104/252 (41%), Gaps = 33/252 (13%)
Query: 75 NLKVLHVLDLSRNEIGGSIPS----------TIGHLKRLRILDLSQNKLVGPIPSSVGPL 124
N++ HVLDL+ N++ T+ L + + D+++ L +
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211
Query: 125 TQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNN 184
T +TTL++ N S+ + ++ K++ I +++ N+ S S + N
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFD-------AIAGTKIQSLI---LSNSYNMGS-SFGHTN 260
Query: 185 LIGPIPSTLGHLNR--LTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLD 242
P T L + DLS++K+ + S H L+ L L+ N++ + DN
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
Query: 243 GPIPPELMNCSKLTTLILGNNLLSGSIPSQIGK-LQKLCYLDLSGNSINGKIPYQLGAIP 301
G + L L L N L GSI S++ + L KL LDLS N I +P
Sbjct: 321 G--------LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371
Query: 302 GIHTVDLSMNNL 313
+ + L N L
Sbjct: 372 NLKELALDTNQL 383
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 31/70 (44%)
Query: 73 IENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNM 132
ENL L VLDLS N I + L L+ L L N+L LT L + +
Sbjct: 343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWL 402
Query: 133 HSNRINGSIP 142
H+N + S P
Sbjct: 403 HTNPWDCSCP 412
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 26/141 (18%)
Query: 103 LRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLE 162
++ DLS++K+ + S T L L + N IN + DN
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK----------------IDDNAFW 320
Query: 163 GPIPSTIASLVNLKSLSLHYNNLIGPIPSTL-GHLNRLTDLDLSENKLVGPIPSSVGHLN 221
G L +L L+L N +G I S + +L++L LDLS N + S L
Sbjct: 321 G--------LTHLLKLNLS-QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP 371
Query: 222 FLQDLDLSNNKLEDLSDNKLD 242
L++L L N+L+ + D D
Sbjct: 372 NLKELALDTNQLKSVPDGIFD 392
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 2/109 (1%)
Query: 59 AIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIP 118
+A N+IN L L L+LS+N +G +L +L +LDLS N +
Sbjct: 305 TLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364
Query: 119 SSVGPLTQLTTLNMHSNRINGSIPLEIGN-LNFLQVLGLSDNKLEGPIP 166
S L L L + +N++ S+P I + L LQ + L N + P
Sbjct: 365 QSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 116/274 (42%), Gaps = 21/274 (7%)
Query: 80 HVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRING 139
+LDL +N I L L+L++N + P + L L TL + SNR+
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK- 93
Query: 140 SIPLEIGN-LNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNR 198
IPL + L+ L L +S+NK+ + L NLKSL + N+L+ LN
Sbjct: 94 LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNS 153
Query: 199 LTDLDLSENKLVGPIPSSVGHLNFLQDLDLSN---NKLEDLSDNKLDGPIPPELMNCSKL 255
L L L + L ++ HL+ L L L + N + D S +L E+ + L
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYL 213
Query: 256 TTL----ILGNNLLSGSIPS---------QIGKLQKLCYLDLSGNSINGKIPYQLGAIPG 302
T+ + G NL S SI + L L +L+LS N I+ L +
Sbjct: 214 DTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLR 273
Query: 303 IHTVDLSMNNLSGGIPVFVRKVPH---LDVSGNK 333
+ + L L+ P R + + L+VSGN+
Sbjct: 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 61/159 (38%), Gaps = 11/159 (6%)
Query: 86 RNEIGGSIPSTIGHLKRL-----------RILDLSQNKLVGPIPSSVGPLTQLTTLNMHS 134
R E + + H KR R+LDL +N++ L L ++
Sbjct: 6 RCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNE 65
Query: 135 NRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLG 194
N ++ P NL L+ LGL N+L+ L NL L + N ++ +
Sbjct: 66 NIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQ 125
Query: 195 HLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKL 233
L L L++ +N LV + LN L+ L L L
Sbjct: 126 DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 107/247 (43%), Gaps = 15/247 (6%)
Query: 82 LDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSI 141
LD+S N+I + L L+ L++ N LV + L L L + + SI
Sbjct: 109 LDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SI 167
Query: 142 PLE-IGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSL-HYNNLIGPIPSTLGHLNRL 199
P E + +L+ L VL L + + L LK L + H+ L P+ L LN L
Sbjct: 168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-L 226
Query: 200 TDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLI 259
T L ++ L +V HL +L+ L+LS N + + ++G + EL+ +L +
Sbjct: 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI-----STIEGSMLHELL---RLQEIQ 278
Query: 260 LGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGG--- 316
L L+ P L L L++SGN + ++ + T+ L N L+
Sbjct: 279 LVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338
Query: 317 IPVFVRK 323
+ VF R+
Sbjct: 339 LWVFRRR 345
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 25/173 (14%)
Query: 68 SIPLE-IENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQ 126
SIP E + +L L VL L I + L RL++L++S P ++ P
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH----WPYLDTMTP-NC 220
Query: 127 LTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLI 186
L LN+ S L I + N V L+ + LV L+ L+L YN +
Sbjct: 221 LYGLNLTS--------LSITHCNLTAVPYLA-----------VRHLVYLRFLNLSYNPIS 261
Query: 187 GPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDN 239
S L L RL ++ L +L P + LN+L+ L++S N+L L ++
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES 314
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 115/246 (46%), Gaps = 56/246 (22%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVG 122
NQI PL+ NL L+ L+LS N I S S + L L+ L+ G + +
Sbjct: 117 NQITDIDPLK--NLTNLNRLELSSNTI--SDISALSGLTSLQQLNF------GNQVTDLK 166
Query: 123 PLTQLTTL---NMHSNRING-SIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSL 178
PL LTTL ++ SN+++ S+ ++ NL + L ++N++ P + L NL L
Sbjct: 167 PLANLTTLERLDISSNKVSDISVLAKLTNL---ESLIATNNQISDITP--LGILTNLDEL 221
Query: 179 SLHYNNL--IGPIPSTLGHLNRLTDLDLSENKLVGPIP--------------------SS 216
SL+ N L IG TL L LTDLDL+ N++ P S
Sbjct: 222 SLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 277
Query: 217 VGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIP-SQIGK 275
+ L L +L+L+ N+LED+S PI N LT L L N +S P S + K
Sbjct: 278 LAGLTALTNLELNENQLEDIS------PIS----NLKNLTYLTLYFNNISDISPVSSLTK 327
Query: 276 LQKLCY 281
LQ+L +
Sbjct: 328 LQRLFF 333
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/235 (28%), Positives = 104/235 (44%), Gaps = 49/235 (20%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVG 122
NQI+ PL I L L L L+ N++ T+ L L LDL+ N++ P +
Sbjct: 204 NQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LS 257
Query: 123 PLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHY 182
LT+LT L + +N+I+ PL L L L L++N+LE P I++L NL L+L++
Sbjct: 258 GLTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 313
Query: 183 NNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLD 242
NN+ P V L LQ L SNNK+ D+S
Sbjct: 314 NNISDISP--------------------------VSSLTKLQRLFFSNNKVSDVS----- 342
Query: 243 GPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSI-NGKIPYQ 296
L N + + L G+N +S P + L ++ L L+ + N + Y+
Sbjct: 343 -----SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYK 390
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 32/137 (23%)
Query: 217 VGHLNFLQDLDLSNNKLEDLS-------------DNKLDGPIPPELMNCSKLTTLILGNN 263
V +LN L ++ SNN+L D++ +N I P L N + LT L L NN
Sbjct: 59 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 117
Query: 264 LLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFVRK 323
++ P + L L L+LS N+I+ + A+ G+ S+ L+ G V K
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLT----SLQQLNFGNQVTDLK 166
Query: 324 -------VPHLDVSGNK 333
+ LD+S NK
Sbjct: 167 PLANLTTLERLDISSNK 183
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 79/246 (32%), Positives = 115/246 (46%), Gaps = 56/246 (22%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVG 122
NQI PL+ NL L+ L+LS N I S S + L L+ L+ G + +
Sbjct: 117 NQITDIDPLK--NLTNLNRLELSSNTI--SDISALSGLTSLQQLNF------GNQVTDLK 166
Query: 123 PLTQLTTL---NMHSNRING-SIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSL 178
PL LTTL ++ SN+++ S+ ++ NL + L ++N++ P + L NL L
Sbjct: 167 PLANLTTLERLDISSNKVSDISVLAKLTNL---ESLIATNNQISDITP--LGILTNLDEL 221
Query: 179 SLHYNNL--IGPIPSTLGHLNRLTDLDLSENKLVGPIP--------------------SS 216
SL+ N L IG TL L LTDLDL+ N++ P S
Sbjct: 222 SLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 277
Query: 217 VGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIP-SQIGK 275
+ L L +L+L+ N+LED+S PI N LT L L N +S P S + K
Sbjct: 278 LAGLTALTNLELNENQLEDIS------PIS----NLKNLTYLTLYFNNISDISPVSSLTK 327
Query: 276 LQKLCY 281
LQ+L +
Sbjct: 328 LQRLFF 333
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 103/235 (43%), Gaps = 49/235 (20%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVG 122
NQI+ PL I L L L L+ N++ T+ L L LDL+ N++ P +
Sbjct: 204 NQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LS 257
Query: 123 PLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHY 182
LT+LT L + +N+I+ PL L L L L++N+LE P I++L NL L+L++
Sbjct: 258 GLTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 313
Query: 183 NNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLD 242
NN+ P V L LQ L NNK+ D+S
Sbjct: 314 NNISDISP--------------------------VSSLTKLQRLFFYNNKVSDVS----- 342
Query: 243 GPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSI-NGKIPYQ 296
L N + + L G+N +S P + L ++ L L+ + N + Y+
Sbjct: 343 -----SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYK 390
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 32/137 (23%)
Query: 217 VGHLNFLQDLDLSNNKLEDLS-------------DNKLDGPIPPELMNCSKLTTLILGNN 263
V +LN L ++ SNN+L D++ +N I P L N + LT L L NN
Sbjct: 59 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 117
Query: 264 LLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFVRK 323
++ P + L L L+LS N+I+ + A+ G+ S+ L+ G V K
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLT----SLQQLNFGNQVTDLK 166
Query: 324 -------VPHLDVSGNK 333
+ LD+S NK
Sbjct: 167 PLANLTTLERLDISSNK 183
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 57/169 (33%), Positives = 80/169 (47%), Gaps = 18/169 (10%)
Query: 128 TTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIG 187
TT++ S R + S+P I Q+L L DN++ P SL+NLK L L N L G
Sbjct: 22 TTVDCRSKR-HASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-G 77
Query: 188 PIP-STLGHLNRLTDLDLSENKLVGPIPSSV-GHLNFLQDLDLSNNKLEDLSDNKLDGPI 245
+P L +LT LDL N+L +PS+V L L++L + NKL +L
Sbjct: 78 ALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLTEL--------- 127
Query: 246 PPELMNCSKLTTLILGNNLLSGSIP-SQIGKLQKLCYLDLSGNSINGKI 293
P + + LT L L N L SIP +L L + L GN + +
Sbjct: 128 PRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWDCEC 175
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 85 SRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLE 144
R++ S+P+ I +IL L N++ P L L L + SN++ G++P+
Sbjct: 26 CRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVG 82
Query: 145 I-GNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLD 203
+ +L L VL L N+L + LV+LK L + N L +P + L LT L
Sbjct: 83 VFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141
Query: 204 LSENKL 209
L +N+L
Sbjct: 142 LDQNQL 147
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSV- 121
NQI P ++L L L L N++G L +L +LDL N+L +PS+V
Sbjct: 50 NQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVF 108
Query: 122 GPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEG 163
L L L M N++ +P I L L L L N+L+
Sbjct: 109 DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS 149
Score = 31.2 bits (69), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 60 IASNQINGSIPLEI-ENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIP 118
+ SNQ+ G++P+ + ++L L VLDL N++ + L L+ L + NKL +P
Sbjct: 71 LGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELP 128
Query: 119 SSVGPLTQLTTLNMHSNRINGSIP 142
+ LT LT L + N++ SIP
Sbjct: 129 RGIERLTHLTHLALDQNQLK-SIP 151
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 111/263 (42%), Gaps = 68/263 (25%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVG 122
NQI PL NL L L L N+I P + +L L L+LS N + S +
Sbjct: 99 NQIADITPLA--NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-----SDIS 149
Query: 123 PLTQLTTLNMHS--NRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSL 180
L+ LT+L S N++ PL NL L+ L +S NK+ S +A L NL+SL +
Sbjct: 150 ALSGLTSLQQLSFGNQVTDLKPL--ANLTTLERLDISSNKVSDI--SVLAKLTNLESL-I 204
Query: 181 HYNNLIGPIP---------------------STLGHLNRLTDLDLSENKLVGPIP----- 214
NN I I TL L LTDLDL+ N++ P
Sbjct: 205 ATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLT 264
Query: 215 ---------------SSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLI 259
S + L L +L+L+ N+LED+S PI N LT L
Sbjct: 265 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS------PIS----NLKNLTYLT 314
Query: 260 LGNNLLSGSIP-SQIGKLQKLCY 281
L N +S P S + KLQ+L +
Sbjct: 315 LYFNNISDISPVSSLTKLQRLFF 337
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 104/235 (44%), Gaps = 49/235 (20%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVG 122
NQI+ PL I L L L L+ N++ T+ L L LDL+ N++ P +
Sbjct: 208 NQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LS 261
Query: 123 PLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHY 182
LT+LT L + +N+I+ PL L L L L++N+LE P I++L NL L+L++
Sbjct: 262 GLTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 317
Query: 183 NNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLD 242
NN+ P V L LQ L +NNK+ D+S
Sbjct: 318 NNISDISP--------------------------VSSLTKLQRLFFANNKVSDVS----- 346
Query: 243 GPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSI-NGKIPYQ 296
L N + + L G+N +S P + L ++ L L+ + N + Y+
Sbjct: 347 -----SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYK 394
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 32/137 (23%)
Query: 217 VGHLNFLQDLDLSNNKLEDLS-------------DNKLDGPIPPELMNCSKLTTLILGNN 263
V +LN L ++ SNN+L D++ +N I P L N + LT L L NN
Sbjct: 63 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 121
Query: 264 LLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFVRK 323
++ P + L L L+LS N+I+ + A+ G+ S+ LS G V K
Sbjct: 122 QITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLT----SLQQLSFGNQVTDLK 170
Query: 324 -------VPHLDVSGNK 333
+ LD+S NK
Sbjct: 171 PLANLTTLERLDISSNK 187
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 82/263 (31%), Positives = 111/263 (42%), Gaps = 68/263 (25%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVG 122
NQI PL NL L L L N+I P + +L L L+LS N + S +
Sbjct: 100 NQIADITPLA--NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI-----SDIS 150
Query: 123 PLTQLTTLNMHS--NRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSL 180
L+ LT+L S N++ PL NL L+ L +S NK+ S +A L NL+SL +
Sbjct: 151 ALSGLTSLQQLSFGNQVTDLKPL--ANLTTLERLDISSNKVSDI--SVLAKLTNLESL-I 205
Query: 181 HYNNLIGPIP---------------------STLGHLNRLTDLDLSENKLVGPIP----- 214
NN I I TL L LTDLDL+ N++ P
Sbjct: 206 ATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLT 265
Query: 215 ---------------SSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLI 259
S + L L +L+L+ N+LED+S PI N LT L
Sbjct: 266 KLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS------PIS----NLKNLTYLT 315
Query: 260 LGNNLLSGSIP-SQIGKLQKLCY 281
L N +S P S + KLQ+L +
Sbjct: 316 LYFNNISDISPVSSLTKLQRLFF 338
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 103/235 (43%), Gaps = 49/235 (20%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVG 122
NQI+ PL I L L L L+ N++ T+ L L LDL+ N++ P +
Sbjct: 209 NQISDITPLGI--LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LS 262
Query: 123 PLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHY 182
LT+LT L + +N+I+ PL L L L L++N+LE P I++L NL L+L++
Sbjct: 263 GLTKLTELKLGANQISNISPL--AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 318
Query: 183 NNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLD 242
NN+ P V L LQ L NNK+ D+S
Sbjct: 319 NNISDISP--------------------------VSSLTKLQRLFFYNNKVSDVS----- 347
Query: 243 GPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSI-NGKIPYQ 296
L N + + L G+N +S P + L ++ L L+ + N + Y+
Sbjct: 348 -----SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYK 395
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 32/137 (23%)
Query: 217 VGHLNFLQDLDLSNNKLEDLS-------------DNKLDGPIPPELMNCSKLTTLILGNN 263
V +LN L ++ SNN+L D++ +N I P L N + LT L L NN
Sbjct: 64 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN 122
Query: 264 LLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFVRK 323
++ P + L L L+LS N+I+ + A+ G+ S+ LS G V K
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNTIS-----DISALSGLT----SLQQLSFGNQVTDLK 171
Query: 324 -------VPHLDVSGNK 333
+ LD+S NK
Sbjct: 172 PLANLTTLERLDISSNK 188
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/238 (30%), Positives = 112/238 (47%), Gaps = 47/238 (19%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVG 122
NQI PL NL L L + N+I S + +L LR L L+++ + S +
Sbjct: 76 NQITDISPLS--NLVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNI-----SDIS 126
Query: 123 PLTQLT---TLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLS 179
PL LT +LN+ +N N S + N L L ++++K++ P IA+L +L SLS
Sbjct: 127 PLANLTKXYSLNLGANH-NLSDLSPLSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183
Query: 180 LHYNNL--IGPIPS------TLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNN 231
L+YN + I P+ S ++N++TD+ + V + L L + NN
Sbjct: 184 LNYNQIEDISPLASLTSLHYFTAYVNQITDI------------TPVANXTRLNSLKIGNN 231
Query: 232 KLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSI 289
K+ DLS L N S+LT L +G N +S + + L KL L++ N I
Sbjct: 232 KITDLS----------PLANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQI 277
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 10/131 (7%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVG 122
NQI P + N L+ L + N+I P + +L +L L++ N++ ++V
Sbjct: 209 NQITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVK 262
Query: 123 PLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHY 182
LT+L LN+ SN+I+ L NL+ L L L++N+L I L NL +L L
Sbjct: 263 DLTKLKXLNVGSNQISDISVL--NNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQ 320
Query: 183 NNL--IGPIPS 191
N++ I P+ S
Sbjct: 321 NHITDIRPLAS 331
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/200 (29%), Positives = 94/200 (47%), Gaps = 30/200 (15%)
Query: 117 IPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSD----NKLEGPIPSTIAS- 171
+P + L TL + N + ++P I +LN L+ L + +L P+ ST AS
Sbjct: 119 LPDTXQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
Query: 172 ----LVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKL--VGPIPSSVGHLNFLQD 225
LVNL+SL L + I +P+++ +L L L + + L +GP ++ HL L++
Sbjct: 178 EHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNSPLSALGP---AIHHLPKLEE 233
Query: 226 LDLSN-NKLEDLSDNKLDGPIPPELMNCSKLTTLILGN--NLLSGSIPSQIGKLQKLCYL 282
LDL L + PP + L LIL + NLL+ +P I +L +L L
Sbjct: 234 LDLRGCTALRN---------YPPIFGGRAPLKRLILKDCSNLLT--LPLDIHRLTQLEKL 282
Query: 283 DLSGNSINGKIPYQLGAIPG 302
DL G ++P + +P
Sbjct: 283 DLRGCVNLSRLPSLIAQLPA 302
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/147 (32%), Positives = 70/147 (47%), Gaps = 4/147 (2%)
Query: 97 IGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGN-LNFLQVLG 155
I +L +R L L NKL S++ LT LT L + N++ S+P + + L L+ L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115
Query: 156 LSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPS 215
L +N+L+ L NL L+L +N L L LT+LDLS N+L
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175
Query: 216 SVGHLNFLQDLDLSNNKLEDLSDNKLD 242
L L+DL L N+L+ + D D
Sbjct: 176 VFDKLTQLKDLRLYQNQLKSVPDGVFD 202
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 56/138 (40%), Gaps = 2/138 (1%)
Query: 95 STIGHLKRLRILDLSQNKLVGPIPSSV-GPLTQLTTLNMHSNRINGSIPLEIGNLNFLQV 153
S + L L L L+ N+L +P+ V LT L L + N++ L L
Sbjct: 79 SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTY 137
Query: 154 LGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPI 213
L L+ N+L+ L NL L L YN L L +L DL L +N+L
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197
Query: 214 PSSVGHLNFLQDLDLSNN 231
L LQ + L +N
Sbjct: 198 DGVFDRLTSLQYIWLHDN 215
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 73 IENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNM 132
+ L L L+L+ N++ L L LDLS N+L LTQL L +
Sbjct: 129 FDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188
Query: 133 HSNRINGSIPLEIGN-LNFLQVLGLSDNKLEGPIP 166
+ N++ S+P + + L LQ + L DN + P
Sbjct: 189 YQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 5/131 (3%)
Query: 73 IENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNM 132
++ L L L L+ N++ L L+ L L +N+L LT LT LN+
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140
Query: 133 HSNRINGSIPLEIGN-LNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPS 191
N++ S+P + + L L L LS N+L+ L LK L L Y N + +P
Sbjct: 141 AHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL-YQNQLKSVPD 198
Query: 192 TLGHLNRLTDL 202
G +RLT L
Sbjct: 199 --GVFDRLTSL 207
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 68 SIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQL 127
+P EI+NL L VLDLS N + S+P+ +G +L+ N +V +P G L L
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNL 318
Query: 128 TTLNMHSNRINGSIPLEIGNLNFLQ-------VLGLSDNKLEGPIP 166
L + N PLE L L + L DN+ E P+P
Sbjct: 319 QFLGVEGN------PLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 55/105 (52%), Gaps = 11/105 (10%)
Query: 189 IPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPE 248
I + + + LT L L+ N L +P+ + +L+ L+ LDLS+N+L L P E
Sbjct: 239 ISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL---------PAE 288
Query: 249 LMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKI 293
L +C +L +N+++ ++P + G L L +L + GN + +
Sbjct: 289 LGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQF 332
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 67/141 (47%), Gaps = 6/141 (4%)
Query: 105 ILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRING--SIPLEIGNLNFLQVLGLSDNKLE 162
L+ +QN + L +L TL + N + + L N++ L+ L +S N L
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 163 G-PIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLN 221
T A ++ L+L N L G + L ++ LDL N+++ IP V HL
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQ 473
Query: 222 FLQDLDLSNNKLEDLSDNKLD 242
LQ+L++++N+L+ + D D
Sbjct: 474 ALQELNVASNQLKSVPDGVFD 494
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 68/154 (44%), Gaps = 6/154 (3%)
Query: 81 VLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKL--VGPIPSSVGPLTQLTTLNMHSNRIN 138
L+ ++N S+ LKRL+ L L +N L + ++ L TL++ N +N
Sbjct: 357 FLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416
Query: 139 G-SIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLN 197
+ + VL LS N L G + + V K L LH NN I IP + HL
Sbjct: 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKV--KVLDLH-NNRIMSIPKDVTHLQ 473
Query: 198 RLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNN 231
L +L+++ N+L L LQ + L +N
Sbjct: 474 ALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 6/110 (5%)
Query: 102 RLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNF-LQVLGLSDNK 160
R + L LSQN + + L++L L + NRI S+ + N L+ L +S N+
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNR 111
Query: 161 LEGPIPSTIASLVNLKSLSLHYNNL-IGPIPSTLGHLNRLTDLDLSENKL 209
L+ +AS L+ L L +N+ + P+ G+L +LT L LS K
Sbjct: 112 LQNISCCPMAS---LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 81 VLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGS 140
VL+LS N + GS+ + ++++LDL N+++ IP V L L LN+ SN++
Sbjct: 432 VLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSV 488
Query: 141 IPLEIGNLNFLQVLGLSDNKLEGPIP 166
L LQ + L DN + P
Sbjct: 489 PDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 69/154 (44%), Gaps = 11/154 (7%)
Query: 183 NNLIGPIPST--LGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNK 240
+N +G I S G L L L+L N+L G P++ + +Q+L L NK++++S NK
Sbjct: 38 DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEIS-NK 96
Query: 241 LDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAI 300
+ + +L TL L +N +S +P L L L+L+ N N A
Sbjct: 97 M-------FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA- 148
Query: 301 PGIHTVDLSMNNLSGGIPVFVRKVPHLDVSGNKF 334
+ L+ G P VR V D+ ++F
Sbjct: 149 EWLRKKSLNGGAARCGAPSKVRDVQIKDLPHSEF 182
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 43/87 (49%)
Query: 121 VGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSL 180
G L L L + N++ G P + +Q L L +NK++ L LK+L+L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 181 HYNNLIGPIPSTLGHLNRLTDLDLSEN 207
+ N + +P + HLN LT L+L+ N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%)
Query: 82 LDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSI 141
L+L RN++ G P+ ++ L L +NK+ L QL TLN++ N+I+ +
Sbjct: 59 LELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118
Query: 142 PLEIGNLNFLQVLGLSDN 159
P +LN L L L+ N
Sbjct: 119 PGSFEHLNSLTSLNLASN 136
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%)
Query: 60 IASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPS 119
+ NQ+ G P E + L L N+I L +L+ L+L N++ +P
Sbjct: 61 LKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG 120
Query: 120 SVGPLTQLTTLNMHSNRINGSIPL 143
S L LT+LN+ SN N + L
Sbjct: 121 SFEHLNSLTSLNLASNPFNCNCHL 144
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 86/212 (40%), Gaps = 36/212 (16%)
Query: 81 VLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGS 140
L+L N I T HL+ L IL LS+N + + L L TL + NR+
Sbjct: 39 YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTV 98
Query: 141 IPLEIGNLNFLQVLGLSDNKLEGPIPS--------------------------TIASLVN 174
L+ L+ L L +N +E IPS LVN
Sbjct: 99 PTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVN 157
Query: 175 LKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLE 234
L+ L+L NL IP+ L L RL +L+LS N+L P S L L+ L L + ++
Sbjct: 158 LRYLNLGMCNL-KDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVA 215
Query: 235 DLSDNKLDGPIPPELMNCSKLTTLILGNNLLS 266
+ N D E +N S NNL+S
Sbjct: 216 TIERNAFDDLKSLEELNLSH-------NNLMS 240
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 57/185 (30%), Positives = 82/185 (44%), Gaps = 36/185 (19%)
Query: 163 GPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNF 222
+P++I VN + L+L N++ T HL L L LS+N LV I VG N
Sbjct: 27 AEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKN-LVRKI--EVGAFNG 81
Query: 223 LQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPS----------- 271
L L N LE L DN+L SKL L L NN + SIPS
Sbjct: 82 LPSL----NTLE-LFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRR 135
Query: 272 -QIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSG--GIPVFVRKVPHLD 328
+G+L++L Y +S + G + + ++L M NL + VR + L+
Sbjct: 136 LDLGELKRLEY--ISEAAFEGLV--------NLRYLNLGMCNLKDIPNLTALVR-LEELE 184
Query: 329 VSGNK 333
+SGN+
Sbjct: 185 LSGNR 189
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 65/229 (28%), Positives = 92/229 (40%), Gaps = 42/229 (18%)
Query: 64 QINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGP 123
++ SIP+ L+L N I T HL+ L IL LS+N + +
Sbjct: 28 EVPASIPVNTR------YLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNG 81
Query: 124 LTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPS---------------- 167
L L TL + NR+ L+ L+ L L +N +E IPS
Sbjct: 82 LPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES-IPSYAFNRVPSLRRLDLGE 140
Query: 168 ----------TIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSV 217
LVNL+ L+L NL IP+ L L RL +L+LS N+L P S
Sbjct: 141 LKRLEYISEAAFEGLVNLRYLNLGMCNL-KDIPN-LTALVRLEELELSGNRLDLIRPGSF 198
Query: 218 GHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLS 266
L L+ L L + ++ + N D E +N S NNL+S
Sbjct: 199 QGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSH-------NNLMS 240
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 55/186 (29%), Positives = 80/186 (43%), Gaps = 36/186 (19%)
Query: 163 GPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNF 222
+P++I VN + L+L N++ T HL L L LS+N LV I VG N
Sbjct: 27 AEVPASIP--VNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKN-LVRKI--EVGAFNG 81
Query: 223 LQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPS----------- 271
L L N LE L DN+L SKL L L NN + SIPS
Sbjct: 82 LPSL----NTLE-LFDNRLTTVPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLRR 135
Query: 272 -QIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSG--GIPVFVRKVPHLD 328
+G+L++L Y+ + + + ++L M NL + VR + L+
Sbjct: 136 LDLGELKRLEYISEAA----------FEGLVNLRYLNLGMCNLKDIPNLTALVR-LEELE 184
Query: 329 VSGNKF 334
+SGN+
Sbjct: 185 LSGNRL 190
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 117/280 (41%), Gaps = 40/280 (14%)
Query: 73 IENLKVLHVLDLSRNEIGGSIPSTI--GHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTL 130
+E L L LDLS N+I S ++ +L L+ L+LS N+ +G + QL L
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
Query: 131 NMHSNRINGSIPLE-IGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLI-GP 188
++ R++ + P NL+FLQVL L+ L+ +A L L+ L+L N+ G
Sbjct: 403 DLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGT 462
Query: 189 IPST--LGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIP 246
I T L + L L LS L+ + L + +DLS+N L
Sbjct: 463 ITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSL------------- 509
Query: 247 PELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTV 306
C + +L S + + YL+L+ NSIN P L + T+
Sbjct: 510 ----TCDSIDSL------------SHLKGI----YLNLAANSINIISPRLLPILSQQSTI 549
Query: 307 DLSMNNLSGGIPVFVRKVPHLDVSGNKFGGEIPTTLANAP 346
+LS N L + + + +K G TT AN P
Sbjct: 550 NLSHNPLDCTCSN-IHFLTWYKENLHKLEGSEETTCANPP 588
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 73/167 (43%), Gaps = 6/167 (3%)
Query: 60 IASNQINGS--IPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPI 117
++ N I S L+++NL L L+LS NE G +L +LDL+ +L
Sbjct: 354 LSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINA 413
Query: 118 PSS-VGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLE-GPIPST--IASLV 173
P S L L LN+ ++ S + L L+ L L N + G I T + ++
Sbjct: 414 PQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVG 473
Query: 174 NLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHL 220
+L+ L L L+ L +++ +DLS N L S+ HL
Sbjct: 474 SLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHL 520
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 75 NLKVLHVLDLSRNEIG-GSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMH 133
+K L LD+S+N + K L L++S N L I + P ++ L++H
Sbjct: 372 QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP--RIKVLDLH 429
Query: 134 SNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTL 193
SN+I SIP ++ L LQ L ++ N+L+ L +L+ + LH N P +
Sbjct: 430 SNKI-KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR-I 487
Query: 194 GHLNRL 199
+L+R
Sbjct: 488 DYLSRW 493
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 65/140 (46%), Gaps = 6/140 (4%)
Query: 106 LDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRIN--GSIPLEIGNLNFLQVLGLSDNKLEG 163
LD S N L + + G LT+L TL + N++ I + LQ L +S N +
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 164 PIPSTIASLV-NLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNF 222
S +L SL++ N L I L R+ LDL NK + IP V L
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEA 445
Query: 223 LQDLDLSNNKLEDLSDNKLD 242
LQ+L++++N+L+ + D D
Sbjct: 446 LQELNVASNQLKSVPDGIFD 465
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 49/104 (47%), Gaps = 4/104 (3%)
Query: 60 IASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPS 119
I+ N I+ +I +L L +L +S N I S + L LDLS NKLV
Sbjct: 28 ISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI--- 84
Query: 120 SVGPLTQLTTLNMHSNRING-SIPLEIGNLNFLQVLGLSDNKLE 162
S P L L++ N + I E GN++ L+ LGLS LE
Sbjct: 85 SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 28/142 (19%)
Query: 81 VLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGS 140
+L++S+N I S I L +LRIL +S N+ + + SV Q
Sbjct: 25 ILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQE------------- 70
Query: 141 IPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIG-PIPSTLGHLNRL 199
L+ L LS NKL + + VNLK L L +N PI G++++L
Sbjct: 71 ----------LEYLDLSHNKL---VKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQL 117
Query: 200 TDLDLSENKLVGPIPSSVGHLN 221
L LS L + HLN
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLN 139
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/169 (31%), Positives = 78/169 (46%), Gaps = 13/169 (7%)
Query: 68 SIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLV---------GPIP 118
S P + L+ L +LDLS N I + L++L ILDL N L GPI
Sbjct: 481 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 540
Query: 119 SSVGPLTQLTTLNMHSNRINGSIPLEI-GNLNFLQVLGLSDNKLEGPIPSTIASLVNLKS 177
G L+ L LN+ SN + IP+E+ +L L+++ L N L S + V+LKS
Sbjct: 541 FLKG-LSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 598
Query: 178 LSLHYNNLIGPIPSTLGHLNR-LTDLDLSENKLVGPIPSSVGHLNFLQD 225
L+L N + G R LT+LD+ N S +N++ +
Sbjct: 599 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE 647
Score = 34.7 bits (78), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%)
Query: 105 ILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGP 164
+L+L+ N+L ++ +QLT+L++ N I+ P L L+VL L N+L
Sbjct: 39 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL 98
Query: 165 IPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQ 224
T A NL L L N++ + L LDLS N L + L LQ
Sbjct: 99 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 158
Query: 225 DLDLSNNKLEDLSDNKLD 242
+L LSNNK++ L +LD
Sbjct: 159 ELLLSNNKIQALKSEELD 176
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 173 VNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNK 232
N+ L+L +N L + ++LT LD+ N + P L L+ L+L +N+
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 233 LEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSING 291
L LSD C+ LT L L +N + + K + L LDLS N ++
Sbjct: 95 LSQLSDKTFAF--------CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 145
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 68 SIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLV---------GPIP 118
S P + L+ L +LDLS N I + L++L ILDL N L GPI
Sbjct: 476 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 535
Query: 119 SSVGPLTQLTTLNMHSNRINGSIPLEI-GNLNFLQVLGLSDNKLEGPIPSTIASLVNLKS 177
G L+ L LN+ SN + IP+E+ +L L+++ L N L S + V+LKS
Sbjct: 536 FLKG-LSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 593
Query: 178 LSLHYNNLIGPIPSTLG-HLNRLTDLDLSENKLVGPIPSSVGHLNFLQD 225
L+L N + G LT+LD+ N S +N++ +
Sbjct: 594 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE 642
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%)
Query: 105 ILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGP 164
+L+L+ N+L ++ +QLT+L++ N I+ P L L+VL L N+L
Sbjct: 34 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL 93
Query: 165 IPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQ 224
T A NL L L N++ + L LDLS N L + L LQ
Sbjct: 94 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 153
Query: 225 DLDLSNNKLEDLSDNKLD 242
+L LSNNK++ L +LD
Sbjct: 154 ELLLSNNKIQALKSEELD 171
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 173 VNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNK 232
N+ L+L +N L + ++LT LD+ N + P L L+ L+L +N+
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 233 LEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSING 291
L LSD C+ LT L L +N + + K + L LDLS N ++
Sbjct: 90 LSQLSDKTFAF--------CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 140
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 52/169 (30%), Positives = 77/169 (45%), Gaps = 13/169 (7%)
Query: 68 SIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLV---------GPIP 118
S P + L+ L +LDLS N I + L++L ILDL N L GPI
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 530
Query: 119 SSVGPLTQLTTLNMHSNRINGSIPLEI-GNLNFLQVLGLSDNKLEGPIPSTIASLVNLKS 177
G L+ L LN+ SN + IP+E+ +L L+++ L N L S + V+LKS
Sbjct: 531 FLKG-LSHLHILNLESNGFD-EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKS 588
Query: 178 LSLHYNNLIGPIPSTLG-HLNRLTDLDLSENKLVGPIPSSVGHLNFLQD 225
L+L N + G LT+LD+ N S +N++ +
Sbjct: 589 LNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE 637
Score = 34.7 bits (78), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 65/138 (47%)
Query: 105 ILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGP 164
+L+L+ N+L ++ +QLT+L++ N I+ P L L+VL L N+L
Sbjct: 29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL 88
Query: 165 IPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQ 224
T A NL L L N++ + L LDLS N L + L LQ
Sbjct: 89 SDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQ 148
Query: 225 DLDLSNNKLEDLSDNKLD 242
+L LSNNK++ L +LD
Sbjct: 149 ELLLSNNKIQALKSEELD 166
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 8/119 (6%)
Query: 173 VNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNK 232
N+ L+L +N L + ++LT LD+ N + P L L+ L+L +N+
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 233 LEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSING 291
L LSD C+ LT L L +N + + K + L LDLS N ++
Sbjct: 85 LSQLSDKTFAF--------CTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 80/314 (25%), Positives = 124/314 (39%), Gaps = 44/314 (14%)
Query: 59 AIASNQINGSIPLEIENLKV--LHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGP 116
++A+NQ+ + LK L LDLS N + + +L LR L L N +
Sbjct: 228 SLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRL 287
Query: 117 IPSSVGPLTQLTTLNMHSNRINGSIPL---------EIGNLNFLQVLGLSDNKLEGPIPS 167
P S L+ L L++ S+ L L +L+ L + DN + +
Sbjct: 288 SPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNIPSTKSN 347
Query: 168 TIASLVNLKSLSL-----HYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNF 222
T LV+LK LSL L +L H LT L+L++N + + L
Sbjct: 348 TFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLT-LNLTKNHISKIANGTFSWLGQ 406
Query: 223 LQDLDLSNNKLED-LSDNKLDG--PIPPELMNCSKLTTLILGNNLLSGSI---------- 269
L+ LDL N++E LS + G I ++ +K L + L S+
Sbjct: 407 LRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVAL 466
Query: 270 ------PSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLS--------G 315
PS L+ L LDLS N+I L + + +D NNL+ G
Sbjct: 467 KNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPG 526
Query: 316 GIPVFVRKVPHLDV 329
G F++ + HL +
Sbjct: 527 GPVNFLKGLSHLHI 540
Score = 35.0 bits (79), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 105/267 (39%), Gaps = 17/267 (6%)
Query: 60 IASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPS 119
+ NQ+ P L +LD N I P L L++L+L N+L
Sbjct: 32 LTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQ 91
Query: 120 SVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLS 179
+ T LT L++ SN I+ N L L LS N L T L NL+ L
Sbjct: 92 TFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELL 151
Query: 180 LHYNNLIGPIPSTLGHL--NRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLS 237
L N ++ L L + L LDLS N L P + L L L+N +L
Sbjct: 152 LAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQL---- 207
Query: 238 DNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIG--KLQKLCYLDLSGNSI----NG 291
+ L + EL N S + L L NN L + S K L LDLS N++ NG
Sbjct: 208 NPHLTEKLCWELSNTS-IQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNG 266
Query: 292 KIPYQLGAIPGIHTVDLSMNNLSGGIP 318
Y +P + + L NN+ P
Sbjct: 267 SFSY----LPSLRYLSLEYNNIQRLSP 289
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 81/182 (44%), Gaps = 25/182 (13%)
Query: 73 IENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNM 132
++L+ L +L LSRN I L L L+L N+L + L++L L +
Sbjct: 84 FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143
Query: 133 HSNRINGSIP------------LEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSL 180
+N I SIP L++G L L + S+ EG L NL+ L+L
Sbjct: 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYI--SEGAFEG--------LSNLRYLNL 192
Query: 181 HYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNK 240
NL IP+ L L +L +LDLS N L P S L LQ L + ++++ + N
Sbjct: 193 AMCNL-REIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250
Query: 241 LD 242
D
Sbjct: 251 FD 252
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 90/204 (44%), Gaps = 38/204 (18%)
Query: 150 FLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKL 209
F +V+ + N E +P I++ N + L+LH N + ++ HL L L LS N +
Sbjct: 45 FSKVICVRKNLRE--VPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI 100
Query: 210 VGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSI 269
+G N L +L N LE L DN+L + SKL L L NN + SI
Sbjct: 101 R---TIEIGAFNGLANL----NTLE-LFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SI 151
Query: 270 PS------------QIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGI 317
PS +G+L++L Y +S + G + + ++L+M NL I
Sbjct: 152 PSYAFNRIPSLRRLDLGELKRLSY--ISEGAFEG--------LSNLRYLNLAMCNLR-EI 200
Query: 318 PVF--VRKVPHLDVSGNKFGGEIP 339
P + K+ LD+SGN P
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRP 224
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 9/174 (5%)
Query: 75 NLKVLHVLDLSRN--EIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNM 132
+L L LDLSRN G + L+ LDLS N ++ + +G L QL L+
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDF 403
Query: 133 -HSN---RINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGP 188
HSN S+ L + NL +L + I + ++SL LK +
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--NF 461
Query: 189 IPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLD 242
+P L LT LDLS+ +L P++ L+ LQ L++++N+L+ + D D
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 76 LKVLHVLDLSRNEIGGS-IPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHS 134
L L VL ++ N + +P L+ L LDLSQ +L P++ L+ L LNM S
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 135 NRINGSIPLEIGN-LNFLQVLGLSDNKLEGPIP 166
N++ S+P I + L LQ + L N + P
Sbjct: 504 NQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 535
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 25/156 (16%)
Query: 82 LDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSI 141
LDLS N + + L++LDLS+ ++ + L+ L+TL + N I
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 90
Query: 142 PLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTD 201
L +G + GLS + + + +ASL N PI GHL L +
Sbjct: 91 -LALGAFS-----GLSSLQKLVAVETNLASLENF------------PI----GHLKTLKE 128
Query: 202 LDLSENKLVG-PIPSSVGHLNFLQDLDLSNNKLEDL 236
L+++ N + +P +L L+ LDLS+NK++ +
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%)
Query: 69 IPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLT 128
+P L+ L LDLS+ ++ P+ L L++L+++ N+L LT L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521
Query: 129 TLNMHSNRINGSIP 142
+ +H+N + S P
Sbjct: 522 KIWLHTNPWDCSCP 535
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 2/126 (1%)
Query: 75 NLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLV-GPIPSSVGPLTQLTTLNMH 133
+L+ L LD+S + L L +L ++ N +P L LT L++
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478
Query: 134 SNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTL 193
++ P +L+ LQVL ++ N+L+ L +L+ + LH N P +
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR-I 537
Query: 194 GHLNRL 199
+L+R
Sbjct: 538 DYLSRW 543
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 11/166 (6%)
Query: 151 LQVLGLSDNKL--EGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENK 208
L+ L LS N L +G + +LK L L +N +I + LG L +L LD +
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSN 407
Query: 209 LVGPIPSSVG-HLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSG 267
L SV L L LD+S+ + +G E++ + GN+
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK-------MAGNSFQEN 460
Query: 268 SIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNL 313
+P +L+ L +LDLS + P ++ + ++++ N L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 4/147 (2%)
Query: 97 IGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGN-LNFLQVLG 155
I +L +R L L NKL S++ LT LT L + N++ S+P + + L L+ L
Sbjct: 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115
Query: 156 LSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPS 215
L +N+L+ L NL L L++N L L LT LDL N+L
Sbjct: 116 LVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG 175
Query: 216 SVGHLNFLQDLDLSNNKLEDLSDNKLD 242
L L+ L L++N+L+ + D D
Sbjct: 176 VFDKLTQLKQLSLNDNQLKSVPDGVFD 202
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 5/131 (3%)
Query: 73 IENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNM 132
++ L L L L+ N++ L L+ L L +N+L LT LT L +
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 133 HSNRINGSIPLEIGN-LNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPS 191
+ N++ S+P + + L L L L +N+L+ L LK LSL+ +N + +P
Sbjct: 141 YHNQLQ-SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLN-DNQLKSVPD 198
Query: 192 TLGHLNRLTDL 202
G +RLT L
Sbjct: 199 --GVFDRLTSL 207
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 72/181 (39%), Gaps = 7/181 (3%)
Query: 106 LDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPI 165
LDL L ++ LT+LT LN+ N++ +L L LGL++N+L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 166 PSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQD 225
L L L L N L L +L +L L+ N+L + L LQ
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 226 LDLSNNKLEDLSDNKLD--GPIPP-----ELMNCSKLTTLILGNNLLSGSIPSQIGKLQK 278
L LS N+L+ + D G + +CS+ TL L + S + G Q
Sbjct: 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETLYLSQWIRENSNKVKDGTGQN 219
Query: 279 L 279
L
Sbjct: 220 L 220
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 8/167 (4%)
Query: 69 IPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLT 128
IP + E L DL + +T L +L L+L N+L LT+L
Sbjct: 33 IPADTEKL------DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 129 TLNMHSNRINGSIPLEIGN-LNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIG 187
TL + +N++ S+PL + + L L L L N+L+ L LK L L+ N L
Sbjct: 87 TLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 188 PIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLE 234
L L L LS N+L + L LQ + L N+ +
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 60/124 (48%), Gaps = 6/124 (4%)
Query: 73 IENLKVLHVLDLSRNEIGGSIP-STIGHLKRLRILDLSQNKLVGPIPSSV-GPLTQLTTL 130
++L L L L+ N++ S+P HL +L L L N+L +PS V LT+L L
Sbjct: 79 FDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKEL 136
Query: 131 NMHSNRINGSIPL-EIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPI 189
+++N++ SIP L LQ L LS N+L+ L L++++L N
Sbjct: 137 RLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195
Query: 190 PSTL 193
TL
Sbjct: 196 CETL 199
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 78/183 (42%), Gaps = 17/183 (9%)
Query: 165 IPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQ 224
+PS I + + + L L L +T L +LT L+L N+L L L
Sbjct: 29 VPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 225 DLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQI-GKLQKLCYLD 283
L L+NN+L L D + ++L L LG N L S+PS + +L KL L
Sbjct: 87 TLGLANNQLASLPLGVFD--------HLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELR 137
Query: 284 LSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP--VFVR--KVPHLDVSGNKFGGEIP 339
L+ N + + + T+ LS N L +P F R K+ + + GN+F
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFDCSRC 196
Query: 340 TTL 342
TL
Sbjct: 197 ETL 199
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 115/268 (42%), Gaps = 41/268 (15%)
Query: 77 KVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNR 136
K+ V D S + S+ + ++K L DLS N L + + P T+L LN+ SN
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKEL---DLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 137 INGSIPLEIGNLNFLQVLGLSDNKLE----GPIPSTIASLVNLKSLSLHYNNLIGPIPST 192
+ ++ LE +L+ L+ L L++N ++ GP T+ + NN I + +
Sbjct: 70 LYETLDLE--SLSTLRTLDLNNNYVQELLVGPSIETLHAA----------NNNISRVSCS 117
Query: 193 LGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLD---LSNNKLEDLSDNKLDGPIPPEL 249
G + ++ L+ NK+ L+DLD S + DL N++D EL
Sbjct: 118 RGQGKK--NIYLANNKIT-----------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Query: 250 MNCSK-LTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDL 308
S L L L N + + Q+ KL LDLS N + P + + G+ + L
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISL 221
Query: 309 SMNNLS--GGIPVFVRKVPHLDVSGNKF 334
N L F + + H D+ GN F
Sbjct: 222 RNNKLVLIEKALRFSQNLEHFDLRGNGF 249
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 74/179 (41%), Gaps = 9/179 (5%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPI-PSSV 121
N+I+ ++ + L +L L N + G + L L LDLS N + + P++
Sbjct: 41 NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTF 100
Query: 122 GPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLH 181
L L TL++ + P L LQ L L DN L+ +T L NL L LH
Sbjct: 101 RGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLH 160
Query: 182 YNNLIGPIPSTLGH----LNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDL 236
N IPS H L+ L L L +N + P + L L L L N L L
Sbjct: 161 GNR----IPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSML 215
Score = 35.0 bits (79), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 12/157 (7%)
Query: 152 QVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVG 211
Q + L N++ ++ S NL L LH N L G + L L LDLS+N +
Sbjct: 34 QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLR 93
Query: 212 PI-PSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIP 270
+ P++ L L L L L++L P + L L L +N L
Sbjct: 94 VVDPTTFRGLGHLHTLHLDRCGLQELG--------PGLFRGLAALQYLYLQDNNLQALPD 145
Query: 271 SQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVD 307
+ L L +L L GN I +P A G+H++D
Sbjct: 146 NTFRDLGNLTHLFLHGNRI-PSVPEH--AFRGLHSLD 179
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 71/268 (26%), Positives = 115/268 (42%), Gaps = 41/268 (15%)
Query: 77 KVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNR 136
K+ V D S + S+ + ++K L DLS N L + + P T+L LN+ SN
Sbjct: 13 KIEKVTDSSLKQALASLRQSAWNVKEL---DLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 137 INGSIPLEIGNLNFLQVLGLSDNKLE----GPIPSTIASLVNLKSLSLHYNNLIGPIPST 192
+ ++ LE +L+ L+ L L++N ++ GP T+ + NN I + +
Sbjct: 70 LYETLDLE--SLSTLRTLDLNNNYVQELLVGPSIETLHAA----------NNNISRVSCS 117
Query: 193 LGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLD---LSNNKLEDLSDNKLDGPIPPEL 249
G + ++ L+ NK+ L+DLD S + DL N++D EL
Sbjct: 118 RGQGKK--NIYLANNKIT-----------MLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Query: 250 MNCSK-LTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDL 308
S L L L N + + Q+ KL LDLS N + P + + G+ + L
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISL 221
Query: 309 SMNNLS--GGIPVFVRKVPHLDVSGNKF 334
N L F + + H D+ GN F
Sbjct: 222 RNNKLVLIEKALRFSQNLEHFDLRGNGF 249
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 55/129 (42%)
Query: 106 LDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPI 165
LDL L ++ LT+LT LN+ N++ +L L LGL++N+L
Sbjct: 40 LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99
Query: 166 PSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQD 225
L L L L N L L +L +L L+ N+L + L LQ
Sbjct: 100 LGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQT 159
Query: 226 LDLSNNKLE 234
L LS N+L+
Sbjct: 160 LSLSTNQLQ 168
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 69/167 (41%), Gaps = 8/167 (4%)
Query: 69 IPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLT 128
IP + E L DL + +T L +L L+L N+L LT+L
Sbjct: 33 IPADTEKL------DLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 129 TLNMHSNRINGSIPLEIGN-LNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIG 187
TL + +N++ S+PL + + L L L L N+L+ L LK L L+ N L
Sbjct: 87 TLGLANNQL-ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS 145
Query: 188 PIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLE 234
L L L LS N+L + L LQ + L N+ +
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 76/175 (43%), Gaps = 17/175 (9%)
Query: 165 IPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQ 224
+PS I + + + L L L +T L +LT L+L N+L L L
Sbjct: 29 VPSGIPA--DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELG 86
Query: 225 DLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQI-GKLQKLCYLD 283
L L+NN+L L D + ++L L LG N L S+PS + +L KL L
Sbjct: 87 TLGLANNQLASLPLGVFD--------HLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELR 137
Query: 284 LSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP--VFVR--KVPHLDVSGNKF 334
L+ N + + + T+ LS N L +P F R K+ + + GN+F
Sbjct: 138 LNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQF 191
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 70/180 (38%), Gaps = 1/180 (0%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPI-PSSV 121
N+I+ + L +L L N + + L L LDLS N + + P++
Sbjct: 42 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 101
Query: 122 GPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLH 181
L +L TL++ + P L LQ L L DN L+ T L NL L LH
Sbjct: 102 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 161
Query: 182 YNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKL 241
N + L+ L L L +N++ P + L L L L N L L L
Sbjct: 162 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221
Score = 33.1 bits (74), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 12/157 (7%)
Query: 152 QVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVG 211
Q + L N++ ++ + NL L LH N L + L L LDLS+N +
Sbjct: 35 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 94
Query: 212 PI-PSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIP 270
+ P++ L L L L L++L P + L L L +N L
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELG--------PGLFRGLAALQYLYLQDNALQALPD 146
Query: 271 SQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVD 307
L L +L L GN I+ +P + A G+H++D
Sbjct: 147 DTFRDLGNLTHLFLHGNRIS-SVPER--AFRGLHSLD 180
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 70/180 (38%), Gaps = 1/180 (0%)
Query: 63 NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPI-PSSV 121
N+I+ + L +L L N + + L L LDLS N + + P++
Sbjct: 41 NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATF 100
Query: 122 GPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLH 181
L +L TL++ + P L LQ L L DN L+ T L NL L LH
Sbjct: 101 HGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLH 160
Query: 182 YNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKL 241
N + L+ L L L +N++ P + L L L L N L L L
Sbjct: 161 GNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 220
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 65/157 (41%), Gaps = 12/157 (7%)
Query: 152 QVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVG 211
Q + L N++ ++ + NL L LH N L + L L LDLS+N +
Sbjct: 34 QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR 93
Query: 212 PI-PSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIP 270
+ P++ L L L L L++L P + L L L +N L
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELG--------PGLFRGLAALQYLYLQDNALQALPD 145
Query: 271 SQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVD 307
L L +L L GN I+ +P + A G+H++D
Sbjct: 146 DTFRDLGNLTHLFLHGNRIS-SVPER--AFRGLHSLD 179
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 110/265 (41%), Gaps = 22/265 (8%)
Query: 72 EIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLN 131
+ +NLK LH L L N+I P L +L L LS+N+L +P + P T L L
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKM-PKT-LQELR 127
Query: 132 MHSNRINGSIPLEIGNLNFLQVLGLSDNKLE--GPIPSTIASLVNLKSLSLHYNNLIGPI 189
+H N I LN + V+ L N L+ G + L + + N I I
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTI 186
Query: 190 PSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPEL 249
P L LT+L L NK+ +S+ LN L L LS N + + + L
Sbjct: 187 PQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG--------SL 236
Query: 250 MNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLS 309
N L L L NN L +P + + + + L N+I+ I PG +T S
Sbjct: 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKAS 294
Query: 310 MNNLSGGIPVFVRKVPHLDVSGNKF 334
+ G+ +F V + ++ + F
Sbjct: 295 YS----GVSLFSNPVQYWEIQPSTF 315
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 89/233 (38%), Gaps = 36/233 (15%)
Query: 81 VLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGS 140
+LDL N+I +LK L L L NK+ P + PL +L L + N++
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL--- 112
Query: 141 IPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLT 200
+L +P T L+ L +H N + S LN++
Sbjct: 113 ------------------KELPEKMPKT------LQELRVHENEITKVRKSVFNGLNQMI 148
Query: 201 DLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLIL 260
++L N L S + + F LS ++ D + + +PP LT L L
Sbjct: 149 VVELGTNPLKS---SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS------LTELHL 199
Query: 261 GNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNL 313
N ++ + + L L L LS NSI+ L P + + L+ N L
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 73/265 (27%), Positives = 110/265 (41%), Gaps = 22/265 (8%)
Query: 72 EIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLN 131
+ +NLK LH L L N+I P L +L L LS+N+L +P + P T L L
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KELPEKM-PKT-LQELR 127
Query: 132 MHSNRINGSIPLEIGNLNFLQVLGLSDNKLE--GPIPSTIASLVNLKSLSLHYNNLIGPI 189
+H N I LN + V+ L N L+ G + L + + N I I
Sbjct: 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTI 186
Query: 190 PSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPEL 249
P L LT+L L NK+ +S+ LN L L LS N + + + L
Sbjct: 187 PQGLPP--SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG--------SL 236
Query: 250 MNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLS 309
N L L L NN L +P + + + + L N+I+ I PG +T S
Sbjct: 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKAS 294
Query: 310 MNNLSGGIPVFVRKVPHLDVSGNKF 334
+ G+ +F V + ++ + F
Sbjct: 295 YS----GVSLFSNPVQYWEIQPSTF 315
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 89/233 (38%), Gaps = 36/233 (15%)
Query: 81 VLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGS 140
+LDL N+I +LK L L L NK+ P + PL +L L + N++
Sbjct: 56 LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL--- 112
Query: 141 IPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLT 200
+L +P T L+ L +H N + S LN++
Sbjct: 113 ------------------KELPEKMPKT------LQELRVHENEITKVRKSVFNGLNQMI 148
Query: 201 DLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLIL 260
++L N L S + + F LS ++ D + + +PP LT L L
Sbjct: 149 VVELGTNPLKS---SGIENGAFQGMKKLSYIRIADTNITTIPQGLPPS------LTELHL 199
Query: 261 GNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNL 313
N ++ + + L L L LS NSI+ L P + + L+ N L
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 76 LKVLHVLDLSRNEIGGS-IPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHS 134
L L VL ++ N + +P L+ L LDLSQ +L P++ L+ L LNM
Sbjct: 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527
Query: 135 NRINGSIPLEIGNLNFLQVLGLSDNKLEGP-------IPSTIASL 172
N LN LQVL S N + PS++A L
Sbjct: 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 572
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 76/165 (46%), Gaps = 11/165 (6%)
Query: 79 LHVLDLSRNEI---GGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNM-HS 134
L LDLSRN + G S G + L+ LDLS N ++ + +G L QL L+ HS
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTIS-LKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHS 430
Query: 135 N---RINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPS 191
N S+ L + NL +L + I + ++SL LK + +P
Sbjct: 431 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--NFLPD 488
Query: 192 TLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDL 236
L LT LDLS+ +L P++ L+ LQ L++S+N L
Sbjct: 489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 11/166 (6%)
Query: 151 LQVLGLSDNKL--EGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENK 208
L+ L LS N L +G + ++LK L L +N +I + LG L +L LD +
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSN 431
Query: 209 LVGPIPSSVG-HLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSG 267
L SV L L LD+S+ + +G E++ + GN+
Sbjct: 432 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK-------MAGNSFQEN 484
Query: 268 SIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNL 313
+P +L+ L +LDLS + P ++ + +++S NN
Sbjct: 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 25/156 (16%)
Query: 82 LDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSI 141
LDLS N + + L++LDLS+ ++ + L+ L+TL + N I
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 114
Query: 142 PLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTD 201
L +G + GLS + + + +ASL N PI GHL L +
Sbjct: 115 -LALGAFS-----GLSSLQKLVAVETNLASLENF------------PI----GHLKTLKE 152
Query: 202 LDLSENKLVG-PIPSSVGHLNFLQDLDLSNNKLEDL 236
L+++ N + +P +L L+ LDLS+NK++ +
Sbjct: 153 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 45/105 (42%), Gaps = 8/105 (7%)
Query: 76 LKVLHVLDLSRNEIGGS-IPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHS 134
L L VL ++ N + +P L+ L LDLSQ +L P++ L+ L LNM
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503
Query: 135 NRINGSIPLEIGNLNFLQVLGLSDNKLEGP-------IPSTIASL 172
N LN LQVL S N + PS++A L
Sbjct: 504 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 548
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 73/164 (44%), Gaps = 9/164 (5%)
Query: 79 LHVLDLSRN--EIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNM-HSN 135
L LDLSRN G + L+ LDLS N ++ + +G L QL L+ HSN
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSN 407
Query: 136 ---RINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPST 192
S+ L + NL +L + I + ++SL LK + +P
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE--NFLPDI 465
Query: 193 LGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDL 236
L LT LDLS+ +L P++ L+ LQ L++S+N L
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 509
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 25/156 (16%)
Query: 82 LDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSI 141
LDLS N + + L++LDLS+ ++ + L+ L+TL + N I
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-- 90
Query: 142 PLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTD 201
L +G + GLS + + + +ASL N PI GHL L +
Sbjct: 91 -LALGAFS-----GLSSLQKLVAVETNLASLENF------------PI----GHLKTLKE 128
Query: 202 LDLSENKLVG-PIPSSVGHLNFLQDLDLSNNKLEDL 236
L+++ N + +P +L L+ LDLS+NK++ +
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 11/166 (6%)
Query: 151 LQVLGLSDN--KLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENK 208
L+ L LS N +G + +LK L L +N +I + LG L +L LD +
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSN 407
Query: 209 LVGPIPSSVG-HLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSG 267
L SV L L LD+S+ + +G E++ + GN+
Sbjct: 408 LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK-------MAGNSFQEN 460
Query: 268 SIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNL 313
+P +L+ L +LDLS + P ++ + +++S NN
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 506
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Query: 76 LKVLHVLDLSRNEIGGS-IPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHS 134
L L VL ++ N + +P L+ L LDLSQ +L P++ L+ L LNM
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 135 NRINGSIPLEIGNLNFLQVLGLSDN 159
N LN LQVL S N
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLN 233
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 82/209 (39%), Gaps = 31/209 (14%)
Query: 106 LDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPI 165
L+L NKL LTQLT L++ SN GLS +G
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSN-------------------GLS---FKGCC 70
Query: 166 PSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVG-HLNFLQ 224
+ +LK L L +N +I + LG L +L LD + L SV L L
Sbjct: 71 SQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129
Query: 225 DLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDL 284
LD+S+ + +G E++ + GN+ +P +L+ L +LDL
Sbjct: 130 YLDISHTHTRVAFNGIFNGLSSLEVLK-------MAGNSFQENFLPDIFTELRNLTFLDL 182
Query: 285 SGNSINGKIPYQLGAIPGIHTVDLSMNNL 313
S + P ++ + +++S NN
Sbjct: 183 SQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 9/170 (5%)
Query: 73 IENLKVLHVLDLSRN--EIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTL 130
+ L L L LS N G + L+ LDLS N ++ + +G L QL L
Sbjct: 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-LEQLEHL 106
Query: 131 NM-HSN---RINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLI 186
+ HSN S+ L + NL +L + I + ++SL LK +
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-- 164
Query: 187 GPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDL 236
+P L LT LDLS+ +L P++ L+ LQ L++S+N L
Sbjct: 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 214
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 10/167 (5%)
Query: 73 IENLKVLHVLDLSRNEIGGSIPSTIGH-LKRLRILDLSQNKLVGPIPSSVGPLTQLTTLN 131
N L LDLSR EI +I H L L L L+ N + P S LT L L
Sbjct: 52 FSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110
Query: 132 MHSNRINGSIPLEIGNLNFLQVLGLSDNKLEG-PIPSTIASLVNLKSLSLHYNNLIGPIP 190
++ IG L L+ L ++ N + +P+ ++L NL + L YN +
Sbjct: 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170
Query: 191 STLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLS 237
+ L L ++LS + + PI +F+QD KL +L+
Sbjct: 171 NDLQFLRENPQVNLSLDMSLNPI-------DFIQDQAFQGIKLHELT 210
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 101 KRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEI-GNLNFLQVLGLSDN 159
K IL LS+N L +++ P T+LT LN+ + L++ G L L L LS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHN 87
Query: 160 KLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGH 219
+L+ +P +L L L + +N L L L L +L L N+L P +
Sbjct: 88 QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 220 LNFLQDLDLSNNKLEDLSDNKLDG 243
L+ L L+NN+L +L L+G
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNG 170
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 16/132 (12%)
Query: 83 DLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIP 142
+L++ ++ G++P L LDLS N+L +P L LT L++ NR+ S+P
Sbjct: 66 ELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLP 116
Query: 143 L-EIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTD 201
L + L LQ L L N+L+ P + L+ LSL NN + +P+ G LN L +
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNQLTELPA--GLLNGLEN 173
Query: 202 LD---LSENKLV 210
LD L EN L
Sbjct: 174 LDTLLLQENSLY 185
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 47/167 (28%), Positives = 71/167 (42%), Gaps = 10/167 (5%)
Query: 73 IENLKVLHVLDLSRNEIGGSIPSTIGH-LKRLRILDLSQNKLVGPIPSSVGPLTQLTTLN 131
N L LDLSR EI +I H L L L L+ N + P S LT L L
Sbjct: 47 FSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 105
Query: 132 MHSNRINGSIPLEIGNLNFLQVLGLSDNKLEG-PIPSTIASLVNLKSLSLHYNNLIGPIP 190
++ IG L L+ L ++ N + +P+ ++L NL + L YN +
Sbjct: 106 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 165
Query: 191 STLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLS 237
+ L L ++LS + + PI +F+QD KL +L+
Sbjct: 166 NDLQFLRENPQVNLSLDMSLNPI-------DFIQDQAFQGIKLHELT 205
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 101 KRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEI-GNLNFLQVLGLSDN 159
K IL LS+N L +++ P T+LT LN+ + L++ G L L L LS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHN 87
Query: 160 KLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGH 219
+L+ +P +L L L + +N L L L L +L L N+L P +
Sbjct: 88 QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 220 LNFLQDLDLSNNKLEDLSDNKLDG 243
L+ L L+NN+L +L L+G
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNG 170
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 16/132 (12%)
Query: 83 DLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIP 142
+L++ ++ G++P L LDLS N+L +P L LT L++ NR+ S+P
Sbjct: 66 ELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLP 116
Query: 143 L-EIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTD 201
L + L LQ L L N+L+ P + L+ LSL NN + +P+ G LN L +
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNQLTELPA--GLLNGLEN 173
Query: 202 LD---LSENKLV 210
LD L EN L
Sbjct: 174 LDTLLLQENSLY 185
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 73/178 (41%), Gaps = 30/178 (16%)
Query: 73 IENLKVLHVLDLSRNEIGGSIPS--TIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTL 130
+E L+ L LDLS ++I S + +L+ L+ L+LS N+ +G + QL L
Sbjct: 345 LEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAFKECPQLELL 404
Query: 131 NMHSNRINGSIPLE-IGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYN------ 183
++ ++ P NL+ L+VL LS L+ +A L +L+ L+L N
Sbjct: 405 DVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNSFQDGS 464
Query: 184 ---------------------NLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHL 220
NL+ L + LDLS N L G ++ HL
Sbjct: 465 ISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHL 522
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 63/256 (24%), Positives = 99/256 (38%), Gaps = 61/256 (23%)
Query: 103 LRILDLSQNKLVGPIPSS--------VGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVL 154
+ LDLSQN + + V PLT+LT LN +N++ L++ L L
Sbjct: 76 ITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKL---TKLDVSQNPLLTYL 132
Query: 155 GLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPI---PSTL-----GHLNRLTDLDLSE 206
+ N L ++ L L H N I + P T N++T+LD+S+
Sbjct: 133 NCARNTL---TEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQ 189
Query: 207 NKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCS--KLTTLILGNNL 264
NKL+ + N + LDL+ N I ++CS KLT +
Sbjct: 190 NKLLNRLNCDT---NNITKLDLNQN-------------IQLTFLDCSSNKLTEI------ 227
Query: 265 LSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTV--DLSMNNLSGGIPVF-- 320
+ L +L Y D S N + L + +H + DL +L+ +
Sbjct: 228 -------DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYF 280
Query: 321 ----VRKVPHLDVSGN 332
RK+ LDV+ N
Sbjct: 281 QAEGCRKIKELDVTHN 296
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 69 IPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLT 128
+P E+ N K L ++DLS N I + ++ +L L LS N+L P + L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 129 TLNMHSNRIN 138
L++H N I+
Sbjct: 106 LLSLHGNDIS 115
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 93 IPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQ 152
+P + + K L ++DLS N++ S +TQL TL + NR+ P L L+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 153 VLGLSDNKL 161
+L L N +
Sbjct: 106 LLSLHGNDI 114
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 117 IPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLK 176
+P + LT +++ +NRI+ N+ L L LS N+L P T L +L+
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 177 SLSLHYNNLIGPIPSTLGHLNRLTDL 202
LSLH N+ I +P G N L+ L
Sbjct: 106 LLSLHGND-ISVVPE--GAFNDLSAL 128
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 9/92 (9%)
Query: 199 LTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTL 258
+T+L L N+ +P + + L +DLSNN++ LS+ N ++L TL
Sbjct: 33 VTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFS--------NMTQLLTL 83
Query: 259 ILGNNLLSGSIPSQIGKLQKLCYLDLSGNSIN 290
IL N L P L+ L L L GN I+
Sbjct: 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 141 IPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLT 200
+P E+ N L ++ LS+N++ + +++ L +L L YN L P T L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLR 105
Query: 201 DLDLSENKL 209
L L N +
Sbjct: 106 LLSLHGNDI 114
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.7 bits (78), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 101 KRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEI-GNLNFLQVLGLSDN 159
K IL LS+N L +++ P T+LT LN+ + L++ G L L L LS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHN 87
Query: 160 KLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGH 219
+L+ +P +L L L + +N L L L L +L L N+L P +
Sbjct: 88 QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 220 LNFLQDLDLSNNKLEDLSDNKLDG 243
L+ L L+NN+L +L L+G
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNG 170
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 79 LHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRIN 138
L +L++ ++ G++P L LDLS N+L +P L LT L++ NR+
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 139 GSIPL-EIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLN 197
S+PL + L LQ L L N+L+ P + L+ LSL NN + +P+ G LN
Sbjct: 114 -SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNQLTELPA--GLLN 169
Query: 198 RLTDLD---LSENKLV 210
L +LD L EN L
Sbjct: 170 GLENLDTLLLQENSLY 185
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.7 bits (78), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 79/169 (46%), Gaps = 10/169 (5%)
Query: 73 IENLKVLHVLDLSRNEIGGSIPSTIG--HLKRLRILDLSQNKLVGPIPSSVGPLTQLTTL 130
+ENL+ L LDLS ++I S + +L L+ L+LS N+ + + QL L
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405
Query: 131 NMHSNRI---NGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNL-I 186
++ R+ + P + NL+ L+VL LS + L+ L L+ L+L N+
Sbjct: 406 DLAFTRLKVKDAQSPFQ--NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPK 463
Query: 187 GPIPST--LGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKL 233
G I T L L RL L LS L + L + +DLS+N+L
Sbjct: 464 GNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRL 512
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 75 NLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHS 134
+LK+++ +DLS N + S + HLK + L+L+ N + +PS + L+Q T+N+
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556
Query: 135 NRINGSIPLEIGNLNFLQVLGLSDNKLE 162
N ++ + N+ FL+ + KLE
Sbjct: 557 NPLDCT----CSNIYFLEWYKENMQKLE 580
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 4/154 (2%)
Query: 71 LEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKL-VGPIPSSVGPLTQLTT 129
L++ NL L L+LS NE +L +LDL+ +L V S L L
Sbjct: 370 LQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429
Query: 130 LNMHSNRINGSIPLEIGNLNFLQVLGLSDNKL-EGPIPST--IASLVNLKSLSLHYNNLI 186
LN+ + ++ S L LQ L L N +G I T + +L L+ L L + +L
Sbjct: 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS 489
Query: 187 GPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHL 220
L + +DLS N+L ++ HL
Sbjct: 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL 523
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 5/144 (3%)
Query: 101 KRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEI-GNLNFLQVLGLSDN 159
K IL LS+N L +++ P T+LT LN+ + L++ G L L L LS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHN 87
Query: 160 KLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGH 219
+L+ +P +L L L + +N L L L L +L L N+L P +
Sbjct: 88 QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 220 LNFLQDLDLSNNKLEDLSDNKLDG 243
L+ L L+NN+L +L L+G
Sbjct: 147 TPKLEKLSLANNQLTELPAGLLNG 170
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 79 LHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRIN 138
L +L++ ++ G++P L LDLS N+L +P L LT L++ NR+
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 139 GSIPL-EIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLN 197
S+PL + L LQ L L N+L+ P + L+ LSL NN + +P+ G LN
Sbjct: 114 -SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNQLTELPA--GLLN 169
Query: 198 RLTDLD---LSENKLV 210
L +LD L EN L
Sbjct: 170 GLENLDTLLLQENSLY 185
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
Query: 101 KRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEI-GNLNFLQVLGLSDN 159
K IL LS+N L +++ P T+LT LN+ + L++ G L L L LS N
Sbjct: 32 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHN 88
Query: 160 KLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGH 219
+L+ +P +L L L + +N L L L L +L L N+L P +
Sbjct: 89 QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 147
Query: 220 LNFLQDLDLSNNKLEDLSDNKLDG 243
L+ L L+NN L +L L+G
Sbjct: 148 TPKLEKLSLANNNLTELPAGLLNG 171
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 79 LHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRIN 138
L +L++ ++ G++P L LDLS N+L +P L LT L++ NR+
Sbjct: 63 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 114
Query: 139 GSIPL-EIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLN 197
S+PL + L LQ L L N+L+ P + L+ LSL NNL +P+ G LN
Sbjct: 115 -SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE-LPA--GLLN 170
Query: 198 RLTDLD---LSENKLV 210
L +LD L EN L
Sbjct: 171 GLENLDTLLLQENSLY 186
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 77 KVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNR 136
K L +DLS N+I P L+ L L L NK+ S L L L +++N+
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115
Query: 137 INGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHL 196
IN +L+ L +L L DNKL+ T + L ++++ L N I HL
Sbjct: 116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC-----HL 170
Query: 197 NRLTD 201
L D
Sbjct: 171 KWLAD 175
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 5/144 (3%)
Query: 82 LDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSI 141
+ L +N I P K+LR +DLS N++ P + L L +L ++ N+I
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96
Query: 142 PLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTD 201
L LQ+L L+ NK+ L NL LSL+ N L T L +
Sbjct: 97 KSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156
Query: 202 LDLSENKLVGPIPSSVGHLNFLQD 225
+ L++N + HL +L D
Sbjct: 157 MHLAQNPFICDC-----HLKWLAD 175
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 16/132 (12%)
Query: 83 DLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIP 142
+L++ ++ G++P L LDLS N+L +P L LT L++ NR+ S+P
Sbjct: 66 ELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLP 116
Query: 143 L-EIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTD 201
L + L LQ L L N+L+ P + L+ LSL NNL +P+ G LN L +
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLEN 173
Query: 202 LD---LSENKLV 210
LD L EN L
Sbjct: 174 LDTLLLQENSLY 185
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
Query: 101 KRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEI-GNLNFLQVLGLSDN 159
K IL LS+N L +++ P T+LT LN+ + L++ G L L L LS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHN 87
Query: 160 KLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGH 219
+L+ +P +L L L + +N L L L L +L L N+L P +
Sbjct: 88 QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 220 LNFLQDLDLSNNKLEDLSDNKLDG 243
L+ L L+NN L +L L+G
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNG 170
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 52/173 (30%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 73 IENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPS-SVGPLTQLTTLN 131
+L L VL L RN I L L L+L N L IPS + L++L L
Sbjct: 95 FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELW 153
Query: 132 MHSNRINGSIPLEIGNLNFLQVLGLSD-NKLEGPIPSTIASLVNLKSLSLHYNNLIGPIP 190
+ +N I + L L L + KLE L NLK L+L N I +P
Sbjct: 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCN-IKDMP 212
Query: 191 STLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDG 243
+ L L L +L++S N P S L+ L+ L + N+++ + N DG
Sbjct: 213 N-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDG 264
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 79 LHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRIN 138
L +L++ ++ G++P L LDLS N+L +P L LT L++ NR+
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 139 GSIPL-EIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLN 197
S+PL + L LQ L L N+L+ P + L+ LSL NNL +P+ G LN
Sbjct: 114 -SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLN 169
Query: 198 RLTDLD---LSENKLV 210
L +LD L EN L
Sbjct: 170 GLENLDTLLLQENSLY 185
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
Query: 101 KRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEI-GNLNFLQVLGLSDN 159
K IL LS+N L +++ P T+LT LN+ + L++ G L L L LS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHN 87
Query: 160 KLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGH 219
+L+ +P +L L L + +N L L L L +L L N+L P +
Sbjct: 88 QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 220 LNFLQDLDLSNNKLEDLSDNKLDG 243
L+ L L+NN L +L L+G
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNG 170
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 76/171 (44%), Gaps = 20/171 (11%)
Query: 124 LTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYN 183
L L L + N+I PL+ NL + L LS N L+ S IA L ++K+L L
Sbjct: 68 LNNLIGLELKDNQITDLTPLK--NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTST 123
Query: 184 NLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDG 243
+ P L L+ L L L N++ P + L LQ L + NN++ DL+
Sbjct: 124 QITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLT------ 173
Query: 244 PIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIP 294
L N SKLTTL +N +S P + L L + L N I+ P
Sbjct: 174 ----PLANLSKLTTLRADDNKISDISP--LASLPNLIEVHLKDNQISDVSP 218
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 55/125 (44%), Gaps = 5/125 (4%)
Query: 77 KVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNR 136
K L +DLS N+I P L+ L L L NK+ S L L L +++N+
Sbjct: 56 KKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115
Query: 137 INGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHL 196
IN +L+ L +L L DNKL+ T + L ++++ L N I HL
Sbjct: 116 INXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC-----HL 170
Query: 197 NRLTD 201
L D
Sbjct: 171 KWLAD 175
Score = 32.3 bits (72), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 5/144 (3%)
Query: 82 LDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSI 141
+ L +N I P K+LR +DLS N++ P + L L +L ++ N+I
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96
Query: 142 PLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTD 201
L LQ+L L+ NK+ L NL LSL+ N L T L +
Sbjct: 97 KSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156
Query: 202 LDLSENKLVGPIPSSVGHLNFLQD 225
+ L++N + HL +L D
Sbjct: 157 MHLAQNPFICDC-----HLKWLAD 175
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 23/181 (12%)
Query: 75 NLKVLHVLDLSRNEIGGSIPS----------TIGHLKRLRILDLSQNKLVGPIPSSVGPL 124
N++ HVLDL+ N++ T+ L + + D+++ L +
Sbjct: 152 NMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211
Query: 125 TQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNN 184
T +TTL++ N S+ + ++ K++ I +++ N+ S S + N
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFD-------AIAGTKIQSLI---LSNSYNMGS-SFGHTN 260
Query: 185 LIGPIPSTLGHLNR--LTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLD 242
P T L + DLS++K+ + S H L+ L L+ N++ + DN
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW 320
Query: 243 G 243
G
Sbjct: 321 G 321
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 1/97 (1%)
Query: 103 LRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLE 162
++ DLS++K+ + S T L L + N IN L L+ L L N+L+
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK 336
Query: 163 GPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRL 199
L +L+ + LH N P + +L+R
Sbjct: 337 SVPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSRW 372
Score = 31.6 bits (70), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Query: 79 LHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRIN 138
+ DLS+++I + S H L L L+QN++ ++ LT L L + +N++
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLK 336
Query: 139 GSIPLEIGN-LNFLQVLGLSDNKLEGPIP 166
S+P I + L LQ + L N + P
Sbjct: 337 -SVPDGIFDRLTSLQKIWLHTNPWDCSCP 364
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 16/132 (12%)
Query: 83 DLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIP 142
+L++ ++ G++P L LDLS N+L +P L LT L++ NR+ S+P
Sbjct: 66 ELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLP 116
Query: 143 L-EIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTD 201
L + L LQ L L N+L+ P + L+ LSL NNL +P+ G LN L +
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLEN 173
Query: 202 LD---LSENKLV 210
LD L EN L
Sbjct: 174 LDTLLLQENSLY 185
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
Query: 101 KRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEI-GNLNFLQVLGLSDN 159
K IL LS+N L +++ P T+LT LN+ + L++ G L L L LS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHN 87
Query: 160 KLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGH 219
+L+ +P +L L L + +N L L L L +L L N+L P +
Sbjct: 88 QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 220 LNFLQDLDLSNNKLEDLSDNKLDG 243
L+ L L+NN L +L L+G
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNG 170
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/132 (34%), Positives = 67/132 (50%), Gaps = 16/132 (12%)
Query: 83 DLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIP 142
+L++ ++ G++P L LDLS N+L +P L LT L++ NR+ S+P
Sbjct: 66 ELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT-SLP 116
Query: 143 L-EIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTD 201
L + L LQ L L N+L+ P + L+ LSL NNL +P+ G LN L +
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPA--GLLNGLEN 173
Query: 202 LD---LSENKLV 210
LD L EN L
Sbjct: 174 LDTLLLQENSLY 185
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
Query: 101 KRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEI-GNLNFLQVLGLSDN 159
K IL LS+N L +++ P T+LT LN+ + L++ G L L L LS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK---LQVDGTLPVLGTLDLSHN 87
Query: 160 KLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGH 219
+L+ +P +L L L + +N L L L L +L L N+L P +
Sbjct: 88 QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 220 LNFLQDLDLSNNKLEDLSDNKLDG 243
L+ L L+NN L +L L+G
Sbjct: 147 TPKLEKLSLANNNLTELPAGLLNG 170
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 43/97 (44%), Gaps = 3/97 (3%)
Query: 106 LDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPI 165
L+L NKL LTQLT L++ N+I L L +L L +NKL+
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 166 PSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDL 202
L LK L+L N L +P G +RLT L
Sbjct: 93 NGVFDKLTQLKELALDTNQLKS-VPD--GIFDRLTSL 126
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 58/120 (48%), Gaps = 5/120 (4%)
Query: 82 LDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSV-GPLTQLTTLNMHSNRINGS 140
L+L N++ L +L L LSQN+ + +P V LT+LT L +H N++ S
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQ-S 90
Query: 141 IPLEIGN-LNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRL 199
+P + + L L+ L L N+L+ L +L+ + LH N P + +L+R
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR-IDYLSRW 149
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 4/96 (4%)
Query: 73 IENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSV-GPLTQLTTLN 131
+ L L L LS+N+I L +L IL L +NKL +P+ V LTQL L
Sbjct: 48 FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELA 106
Query: 132 MHSNRINGSIPLEIGN-LNFLQVLGLSDNKLEGPIP 166
+ +N++ S+P I + L LQ + L N + P
Sbjct: 107 LDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 40/90 (44%), Gaps = 2/90 (2%)
Query: 154 LGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPI 213
L L NKL+ L L LSL N + L +LT L L ENKL +
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS-L 91
Query: 214 PSSV-GHLNFLQDLDLSNNKLEDLSDNKLD 242
P+ V L L++L L N+L+ + D D
Sbjct: 92 PNGVFDKLTQLKELALDTNQLKSVPDGIFD 121
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 5/144 (3%)
Query: 101 KRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEI-GNLNFLQVLGLSDN 159
K IL LS+N L +++ P T+LT LN+ + L++ G L L L LS N
Sbjct: 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTK---LQVDGTLPVLGTLDLSHN 87
Query: 160 KLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGH 219
+L+ +P +L L L + +N L L L L +L L N+L P +
Sbjct: 88 QLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 220 LNFLQDLDLSNNKLEDLSDNKLDG 243
L+ L L+NN L +L L+G
Sbjct: 147 TPKLEKLSLANNDLTELPAGLLNG 170
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 68/136 (50%), Gaps = 16/136 (11%)
Query: 79 LHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRIN 138
L +L++ ++ G++P L LDLS N+L +P L LT L++ NR+
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 139 GSIPL-EIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLN 197
S+PL + L LQ L L N+L+ P + L+ LSL NN + +P+ G LN
Sbjct: 114 -SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNDLTELPA--GLLN 169
Query: 198 RLTDLD---LSENKLV 210
L +LD L EN L
Sbjct: 170 GLENLDTLLLQENSLY 185
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 58/124 (46%), Gaps = 7/124 (5%)
Query: 81 VLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSV-GPLTQLTTLNMHSNRING 139
LDL N + L L L L NKL +P+ V LT LT LN+ +N++
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQS-LPNGVFNKLTSLTYLNLSTNQLQ- 89
Query: 140 SIPLEIGN-LNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNR 198
S+P + + L L+ L L+ N+L+ L LK L L Y N + +P G +R
Sbjct: 90 SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL-YQNQLKSVPD--GVFDR 146
Query: 199 LTDL 202
LT L
Sbjct: 147 LTSL 150
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 73 IENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNM 132
L L L+LS N++ L +L+ L L+ N+L LTQL L +
Sbjct: 72 FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131
Query: 133 HSNRINGSIPLEIGN-LNFLQVLGLSDNKLEGPIP 166
+ N++ S+P + + L LQ + L DN + P
Sbjct: 132 YQNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 2/118 (1%)
Query: 126 QLTTLNMHSNRINGSIPLEIGN-LNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNN 184
Q T L++ +N + S+P + + L L L L NKL+ L +L L+L N
Sbjct: 29 QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87
Query: 185 LIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLD 242
L L +L +L L+ N+L L L+DL L N+L+ + D D
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD 145
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 38/83 (45%)
Query: 152 QVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVG 211
Q L L++N++ P LVNL+ L + N L L +LT LDL++N L
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS 95
Query: 212 PIPSSVGHLNFLQDLDLSNNKLE 234
+ +L L + L NN +
Sbjct: 96 IPRGAFDNLKSLTHIYLYNNPWD 118
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 47/98 (47%), Gaps = 6/98 (6%)
Query: 67 GSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSV-GPLT 125
S+P I K L L+ N+I P HL L+ L + NKL IP+ V LT
Sbjct: 25 ASVPAGIPTDK--QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLT 81
Query: 126 QLTTLNMHSNRINGSIPL-EIGNLNFLQVLGLSDNKLE 162
QLT L+++ N + SIP NL L + L +N +
Sbjct: 82 QLTQLDLNDNHLK-SIPRGAFDNLKSLTHIYLYNNPWD 118
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 70/276 (25%), Positives = 110/276 (39%), Gaps = 39/276 (14%)
Query: 81 VLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGS 140
+LDL N+I L+ L L L NK+ + PL +L L + N +
Sbjct: 58 LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117
Query: 141 IPLEIGNL-NFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNL--IGPIPSTLGHLN 197
P NL + L L + DN++ + L N+ + + N L G P L
Sbjct: 118 PP----NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL- 172
Query: 198 RLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTT 257
+L L +SE KL G IP + L +L L +NK++ + +L+ SKL
Sbjct: 173 KLNYLRISEAKLTG-IPKDLPET--LNELHLDHNKIQAIELE--------DLLRYSKLYR 221
Query: 258 LILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLS--- 314
L LG+N + + L L L L N ++ ++P L + + V L NN++
Sbjct: 222 LGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280
Query: 315 ----------------GGIPVFVRKVPHLDVSGNKF 334
GI +F VP+ +V F
Sbjct: 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 80/189 (42%), Gaps = 35/189 (18%)
Query: 72 EIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLN 131
+ + L+ L+ L L N+I L++L+ L +S+N LV IP ++ + L L
Sbjct: 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELR 129
Query: 132 MHSNRIN------------------GSIPLEIGNLNF---------LQVLGLSDNKLEGP 164
+H NRI G PLE N F L L +S+ KL G
Sbjct: 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE--NSGFEPGAFDGLKLNYLRISEAKLTG- 186
Query: 165 IPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQ 224
IP + +N L L +N + L ++L L L N++ S+ L L+
Sbjct: 187 IPKDLPETLN--ELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244
Query: 225 DLDLSNNKL 233
+L L NNKL
Sbjct: 245 ELHLDNNKL 253
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 159 NKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTL-GHLNRLTDLDLSENKLVGPIPS-- 215
N+LEG +P+ S + L SL+L YN I IP+ G ++ +L + NKL IP+
Sbjct: 340 NQLEGKLPA-FGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKL-KYIPNIF 396
Query: 216 SVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLS 266
++ +D S N++ + D P+ P ++++ L NN +S
Sbjct: 397 DAKSVSVXSAIDFSYNEIGSVDGKNFD-PLDPTPFKGINVSSINLSNNQIS 446
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Query: 228 LSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILG-NNLLSGSIPSQIGKLQKLCYLDLSG 286
+S +L+D D P+ K+ + +G NNL + + + + K +KL L+
Sbjct: 286 ISGEQLKDDWQALADAPVG------EKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLY 339
Query: 287 NSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPV----FVRKVPHLDVSGNK 333
N + GK+P G+ + +++L+ N ++ IP F +V +L + NK
Sbjct: 340 NQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNK 388
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 6/111 (5%)
Query: 80 HVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRING 139
VL L N+I P L +L L+L+ N+L LT+LT L +H N++
Sbjct: 43 QVLHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLK- 101
Query: 140 SIPLEI-GNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPI 189
SIP+ + NL L + L +N P + ++ LK+ + + +++ P+
Sbjct: 102 SIPMGVFDNLKSLTHIYLFNN----PWDCECSDILYLKNWIVQHASIVNPL 148
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 73/165 (44%), Gaps = 20/165 (12%)
Query: 130 LNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPI 189
L + N+I PL+ NL + L LS N L+ S IA L ++K+L L +
Sbjct: 68 LELKDNQITDLAPLK--NLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDVT 123
Query: 190 PSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPEL 249
P L L+ L L L N++ P + L LQ L + N ++ DL+ L
Sbjct: 124 P--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLT----------PL 169
Query: 250 MNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIP 294
N SKLTTL +N +S P + L L + L N I+ P
Sbjct: 170 ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP 212
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 14/98 (14%)
Query: 217 VGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKL 276
V +LN L L+L +N++ DL+ L N +K+T L L N L S I L
Sbjct: 59 VQYLNNLIGLELKDNQITDLA----------PLKNLTKITELELSGNPLKNV--SAIAGL 106
Query: 277 QKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLS 314
Q + LDL+ I P L + + + L +N ++
Sbjct: 107 QSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQIT 142
>pdb|1KS2|A Chain A, Crystal Structure Analysis Of The Rpia, Structural
Genomics, Protein Ec1268.
pdb|1KS2|B Chain B, Crystal Structure Analysis Of The Rpia, Structural
Genomics, Protein Ec1268
Length = 219
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 149 NFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNL 185
+F+ LG ++EG + S+ AS LKSL +H +L
Sbjct: 34 HFIDALGTXKGQIEGAVSSSDASTEKLKSLGIHVFDL 70
>pdb|1LKZ|A Chain A, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia)
From Escherichia Coli.
pdb|1LKZ|B Chain B, Crystal Structure Of D-Ribose-5-Phosphate Isomerase (Rpia)
From Escherichia Coli.
pdb|1O8B|A Chain A, Structure Of Escherichia Coli Ribose-5-Phosphate
Isomerase, Rpia, Complexed With Arabinose-5-Phosphate.
pdb|1O8B|B Chain B, Structure Of Escherichia Coli Ribose-5-Phosphate
Isomerase, Rpia, Complexed With Arabinose-5-Phosphate
Length = 219
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 149 NFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNL 185
+F+ LG ++EG + S+ AS LKSL +H +L
Sbjct: 34 HFIDALGTXKGQIEGAVSSSDASTEKLKSLGIHVFDL 70
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of
Fmnl3 Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of
Fmnl3 Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of
Fmnl3 Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of
Fmnl3 Bound To Actin
Length = 402
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 59 AIASNQINGSIPLEIENLKVLHVLDLSRNE 88
A+ NQING++ E+++ K+L LDL R E
Sbjct: 26 ALKPNQINGTVFSELDDEKILEDLDLDRFE 55
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
Query: 80 HVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSV-GPLTQLTTLNMHSNRIN 138
VL L N+I P L +L LDL N+L +P+ V LTQLT L+++ N++
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLNDNQLK 91
Query: 139 GSIP 142
SIP
Sbjct: 92 -SIP 94
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 152 QVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKL 209
QVL L DN++ P L L L L N L L +LT L L++N+L
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90
>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
Member B
Length = 168
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 162 EGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLN 221
+G I A VNL+ LSL LI S L L +L L+LSEN++ G + L
Sbjct: 38 DGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95
Query: 222 FLQDLDLSNNKLEDLSD----NKLDGPIPPELMNCS 253
L L+LS NKL+D+S KL+ +L NC
Sbjct: 96 NLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE 131
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 68/161 (42%), Gaps = 26/161 (16%)
Query: 93 IPSTIG-HLKRLRILDLSQNKLVGPI---PSSVGPLTQLTTLNMHSNRIN-----GSIPL 143
+P + HLK L LDLS+N +V + G L TL + N + G I L
Sbjct: 351 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 410
Query: 144 EIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNL---IGPIPSTLGHLNRLT 200
+ NL L + S N P+P + ++ L+L + IP TL
Sbjct: 411 TLKNLTSLDI---SRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV----- 461
Query: 201 DLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKL 241
LD+S N L S L LQ+L +S NKL+ L D L
Sbjct: 462 -LDVSNNNL----DSFSLFLPRLQELYISRNKLKTLPDASL 497
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 75 NLKVLHVLDLSR-NEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMH 133
NL+VL +L SR N I G ++G L+ L DLS N L S GPL+ L LN+
Sbjct: 77 NLQVL-ILKSSRINTIEGDAFYSLGSLEHL---DLSDNHLSSLSSSWFGPLSSLKYLNLM 132
Query: 134 SN 135
N
Sbjct: 133 GN 134
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Query: 307 DLSMNNLSGGIPVFVRKVP---HLDVSGNK 333
+LS N +SGG+ V K P HL++SGNK
Sbjct: 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 68/161 (42%), Gaps = 26/161 (16%)
Query: 93 IPSTIG-HLKRLRILDLSQNKLVGPI---PSSVGPLTQLTTLNMHSNRIN-----GSIPL 143
+P + HLK L LDLS+N +V + G L TL + N + G I L
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384
Query: 144 EIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNL---IGPIPSTLGHLNRLT 200
+ NL L + S N P+P + ++ L+L + IP TL
Sbjct: 385 TLKNLTSLDI---SRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEV----- 435
Query: 201 DLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKL 241
LD+S N L S L LQ+L +S NKL+ L D L
Sbjct: 436 -LDVSNNNL----DSFSLFLPRLQELYISRNKLKTLPDASL 471
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 75 NLKVLHVLDLSR-NEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMH 133
NL+VL +L SR N I G ++G L+ L DLS N L S GPL+ L LN+
Sbjct: 51 NLQVL-ILKSSRINTIEGDAFYSLGSLEHL---DLSDNHLSSLSSSWFGPLSSLKYLNLM 106
Query: 134 SN 135
N
Sbjct: 107 GN 108
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 7/78 (8%)
Query: 67 GSIPLEI-ENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSV-GPL 124
S+P I +VL++ D N+I P L +L LDL N+L +P+ V L
Sbjct: 30 ASVPTGIPTTTQVLYLYD---NQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 85
Query: 125 TQLTTLNMHSNRINGSIP 142
TQLT L+++ N++ SIP
Sbjct: 86 TQLTQLSLNDNQLK-SIP 102
Score = 28.1 bits (61), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%)
Query: 152 QVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVG 211
QVL L DN++ P L L L L N L L +LT L L++N+L
Sbjct: 41 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 100
Query: 212 PIPSSVGHLNFLQDLDLSNNKLE 234
+ +L L + L NN +
Sbjct: 101 IPRGAFDNLKSLTHIWLLNNPWD 123
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 14/173 (8%)
Query: 79 LHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPS-SVGPLTQLTTLNMHSNRI 137
L VLDLSR EI L L L L+ N PI S ++G + L++L
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN----PIQSLALGAFSGLSSLQKLVAVE 109
Query: 138 NGSIPLE---IGNLNFLQVLGLSDNKLEG-PIPSTIASLVNLKSLSLHYNNLIGPIPSTL 193
LE IG+L L+ L ++ N ++ +P ++L NL+ L L N + + L
Sbjct: 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
Query: 194 GHLNRLTDLDLSENKLVGPI----PSSVGHLNFLQDLDLSNNKLEDLSDNKLD 242
L+++ L+LS + + P+ P + + L++L L N+L+ + D D
Sbjct: 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFD 221
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 14/173 (8%)
Query: 79 LHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPS-SVGPLTQLTTLNMHSNRI 137
L VLDLSR EI L L L L+ N PI S ++G + L++L
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN----PIQSLALGAFSGLSSLQKLVAVE 110
Query: 138 NGSIPLE---IGNLNFLQVLGLSDNKLEG-PIPSTIASLVNLKSLSLHYNNLIGPIPSTL 193
LE IG+L L+ L ++ N ++ +P ++L NL+ L L N + + L
Sbjct: 111 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
Query: 194 GHLNRLTDLDLSENKLVGPI----PSSVGHLNFLQDLDLSNNKLEDLSDNKLD 242
L+++ L+LS + + P+ P + + L++L L N+L+ + D D
Sbjct: 171 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFD 222
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 14/173 (8%)
Query: 79 LHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPS-SVGPLTQLTTLNMHSNRI 137
L VLDLSR EI L L L L+ N PI S ++G + L++L
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN----PIQSLALGAFSGLSSLQKLVALE 111
Query: 138 NGSIPLE---IGNLNFLQVLGLSDNKLEG-PIPSTIASLVNLKSLSLHYNNLIGPIPSTL 193
LE IG+L L+ L ++ N ++ +P ++L NL+ L L N + + L
Sbjct: 112 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
Query: 194 GHLNRLTDLDLSENKLVGPI----PSSVGHLNFLQDLDLSNNKLEDLSDNKLD 242
L+++ L+LS + + P+ P + + L++L L N+L+ + D D
Sbjct: 172 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFD 223
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 14/173 (8%)
Query: 79 LHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPS-SVGPLTQLTTLNMHSNRI 137
L VLDLSR EI L L L L+ N PI S ++G + L++L
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN----PIQSLALGAFSGLSSLQKLVAVE 111
Query: 138 NGSIPLE---IGNLNFLQVLGLSDNKLEG-PIPSTIASLVNLKSLSLHYNNLIGPIPSTL 193
LE IG+L L+ L ++ N ++ +P ++L NL+ L L N + + L
Sbjct: 112 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 171
Query: 194 GHLNRLTDLDLSENKLVGPI----PSSVGHLNFLQDLDLSNNKLEDLSDNKLD 242
L+++ L+LS + + P+ P + + L++L L N+L+ + D D
Sbjct: 172 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFD 223
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 81/173 (46%), Gaps = 14/173 (8%)
Query: 79 LHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPS-SVGPLTQLTTLNMHSNRI 137
L VLDLSR EI L L L L+ N PI S ++G + L++L
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN----PIQSLALGAFSGLSSLQKLVAVE 110
Query: 138 NGSIPLE---IGNLNFLQVLGLSDNKLEG-PIPSTIASLVNLKSLSLHYNNLIGPIPSTL 193
LE IG+L L+ L ++ N ++ +P ++L NL+ L L N + + L
Sbjct: 111 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 170
Query: 194 GHLNRLTDLDLSENKLVGPI----PSSVGHLNFLQDLDLSNNKLEDLSDNKLD 242
L+++ L+LS + + P+ P + + L++L L N+L+ + D D
Sbjct: 171 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVPDGIFD 222
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 67 GSIPLEI-ENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSV-GPL 124
S+P I +VL++ D N I P L +L LDL N+L +P+ V L
Sbjct: 22 ASVPTGIPTTTQVLYLYD---NRITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKL 77
Query: 125 TQLTTLNMHSNRINGSIP 142
TQLT L+++ N++ SIP
Sbjct: 78 TQLTQLSLNDNQLK-SIP 94
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 35/83 (42%)
Query: 152 QVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVG 211
QVL L DN++ P L L L L N L L +LT L L++N+L
Sbjct: 33 QVLYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKS 92
Query: 212 PIPSSVGHLNFLQDLDLSNNKLE 234
+ +L L + L NN +
Sbjct: 93 IPRGAFDNLRSLTHIWLLNNPWD 115
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 99 HLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSD 158
HL +L L L NK+ + + LT+L TL++ N+I+ +PL L LQ L LS
Sbjct: 132 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSK 187
Query: 159 NKLEGPIPSTIASLVNLKSLSL 180
N + S + +L LK+L +
Sbjct: 188 NHI-----SDLRALAGLKNLDV 204
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 99 HLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSD 158
HL +L L L NK+ + + LT+L TL++ N+I+ +PL L LQ L LS
Sbjct: 130 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSK 185
Query: 159 NKLEGPIPSTIASLVNLKSLSL 180
N + S + +L LK+L +
Sbjct: 186 NHI-----SDLRALAGLKNLDV 202
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 99 HLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSD 158
HL +L L L NK+ + + LT+L TL++ N+I+ +PL L LQ L LS
Sbjct: 132 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSK 187
Query: 159 NKLEGPIPSTIASLVNLKSLSL 180
N + S + +L LK+L +
Sbjct: 188 NHI-----SDLRALAGLKNLDV 204
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 99 HLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSD 158
HL +L L L NK+ + + LT+L TL++ N+I+ +PL L LQ L LS
Sbjct: 152 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSK 207
Query: 159 NKLEGPIPSTIASLVNLKSLSL 180
N + S + +L LK+L +
Sbjct: 208 NHI-----SDLRALAGLKNLDV 224
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 69/168 (41%), Gaps = 11/168 (6%)
Query: 79 LHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSN--R 136
L L L+ N I + L L LDLS N L S PL+ LT LN+ N +
Sbjct: 52 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 111
Query: 137 INGSIPLEIGNLNFLQVLGLSDNKLEGPIPST-IASLVNLKSLSLHYNNLIGPIPSTLGH 195
G L +L LQ+L + + I A L L+ L + ++L P +L
Sbjct: 112 TLGETSL-FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 170
Query: 196 LNRLTDLDLSENK------LVGPIPSSVGHLNFLQDLDLSNNKLEDLS 237
+ ++ L L + + + SSV L L+D DL +LS
Sbjct: 171 IQNVSHLILHMKQHILLLEIFVDVTSSVECLE-LRDTDLDTFHFSELS 217
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 99 HLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSD 158
HL +L L L NK+ + + LT+L TL++ N+I+ +PL L LQ L LS
Sbjct: 127 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPL--ACLTKLQNLYLSK 182
Query: 159 NKLEGPIPSTIASLVNLKSLSL 180
N + S + +L LK+L +
Sbjct: 183 NHI-----SDLRALCGLKNLDV 199
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 69/168 (41%), Gaps = 11/168 (6%)
Query: 79 LHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSN--R 136
L L L+ N I + L L LDLS N L S PL+ LT LN+ N +
Sbjct: 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK 137
Query: 137 INGSIPLEIGNLNFLQVLGLSDNKLEGPIPST-IASLVNLKSLSLHYNNLIGPIPSTLGH 195
G L +L LQ+L + + I A L L+ L + ++L P +L
Sbjct: 138 TLGETSL-FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196
Query: 196 LNRLTDLDLSENK------LVGPIPSSVGHLNFLQDLDLSNNKLEDLS 237
+ ++ L L + + + SSV L L+D DL +LS
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLE-LRDTDLDTFHFSELS 243
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 9/82 (10%)
Query: 99 HLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSD 158
HL +L L L NK+ + + LT+L TL++ N+I+ +PL L LQ L LS
Sbjct: 129 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPL--AGLTKLQNLYLSK 184
Query: 159 NKLEGPIPSTIASLVNLKSLSL 180
N + S + +L LK+L +
Sbjct: 185 NHI-----SDLRALAGLKNLDV 201
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 307 DLSMNNLSGGIPVFVRKVP---HLDVSGNK 333
+LS N +SG + V K P HL++SGNK
Sbjct: 75 ELSENRISGDLEVLAEKCPNLKHLNLSGNK 104
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.138 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,024,168
Number of Sequences: 62578
Number of extensions: 399475
Number of successful extensions: 1477
Number of sequences better than 100.0: 111
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 51
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 485
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)