Query 044133
Match_columns 384
No_of_seqs 240 out of 2966
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 11:46:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044133.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044133hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 4.3E-41 9.3E-46 339.6 26.9 340 2-341 209-590 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.9E-38 6.2E-43 319.1 24.8 341 1-342 184-567 (968)
3 KOG4194 Membrane glycoprotein 100.0 8.1E-37 1.8E-41 268.0 4.0 329 4-341 101-435 (873)
4 KOG4194 Membrane glycoprotein 100.0 6.7E-36 1.5E-40 262.3 5.2 322 5-335 78-405 (873)
5 KOG0444 Cytoskeletal regulator 99.9 6.2E-30 1.3E-34 227.1 -3.3 315 4-335 31-375 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 8.7E-28 1.9E-32 213.6 -0.8 329 3-345 76-414 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 4.4E-27 9.6E-32 198.4 -8.9 148 6-161 161-309 (565)
8 KOG0472 Leucine-rich repeat pr 99.9 2.7E-26 5.9E-31 193.7 -5.4 322 2-335 65-541 (565)
9 PLN03210 Resistant to P. syrin 99.9 4.3E-21 9.2E-26 195.1 24.1 265 55-340 591-887 (1153)
10 PLN03210 Resistant to P. syrin 99.9 5.1E-21 1.1E-25 194.5 23.6 284 5-312 589-880 (1153)
11 KOG4237 Extracellular matrix p 99.9 9.5E-25 2.1E-29 183.9 -4.2 275 6-290 68-359 (498)
12 KOG4237 Extracellular matrix p 99.9 1.4E-24 3.1E-29 182.8 -6.7 278 30-317 68-362 (498)
13 PRK15387 E3 ubiquitin-protein 99.8 4E-20 8.6E-25 175.7 17.9 268 5-324 201-468 (788)
14 KOG0618 Serine/threonine phosp 99.8 2.8E-22 6.1E-27 185.8 -3.5 281 10-313 183-488 (1081)
15 KOG0618 Serine/threonine phosp 99.8 1.2E-21 2.5E-26 181.8 -3.3 269 29-311 241-510 (1081)
16 PRK15387 E3 ubiquitin-protein 99.8 4E-18 8.6E-23 162.3 16.7 245 5-298 222-466 (788)
17 cd00116 LRR_RI Leucine-rich re 99.8 7.6E-21 1.6E-25 168.8 -2.8 280 9-312 2-318 (319)
18 cd00116 LRR_RI Leucine-rich re 99.8 8.1E-21 1.7E-25 168.6 -3.5 263 3-289 21-319 (319)
19 PRK15370 E3 ubiquitin-protein 99.7 6.7E-17 1.5E-21 154.7 13.9 247 30-315 179-429 (754)
20 PRK15370 E3 ubiquitin-protein 99.7 1.2E-16 2.6E-21 153.0 13.3 248 5-291 178-429 (754)
21 KOG0617 Ras suppressor protein 99.6 1.7E-17 3.7E-22 124.8 -3.8 157 26-187 30-187 (264)
22 KOG0617 Ras suppressor protein 99.6 4.4E-17 9.4E-22 122.7 -4.3 158 50-212 30-188 (264)
23 PLN03150 hypothetical protein; 99.5 1.5E-13 3.2E-18 131.2 9.8 110 223-340 420-533 (623)
24 KOG1909 Ran GTPase-activating 99.4 1.9E-14 4E-19 120.6 -2.5 242 48-313 25-310 (382)
25 KOG1909 Ran GTPase-activating 99.4 1.6E-14 3.5E-19 120.9 -3.6 245 23-290 24-311 (382)
26 KOG3207 Beta-tubulin folding c 99.3 5.3E-13 1.2E-17 115.1 -0.8 216 75-292 119-341 (505)
27 KOG3207 Beta-tubulin folding c 99.3 6.5E-13 1.4E-17 114.6 -0.7 209 27-235 119-340 (505)
28 PF14580 LRR_9: Leucine-rich r 99.2 1.1E-11 2.3E-16 97.5 5.9 108 196-315 18-127 (175)
29 PLN03150 hypothetical protein; 99.2 9E-11 1.9E-15 112.3 10.3 113 198-318 419-532 (623)
30 PF14580 LRR_9: Leucine-rich r 99.2 2.1E-11 4.6E-16 95.8 3.8 57 252-308 87-147 (175)
31 KOG1259 Nischarin, modulator o 99.1 7E-12 1.5E-16 103.4 0.5 128 174-315 285-413 (490)
32 KOG4658 Apoptotic ATPase [Sign 99.1 7.5E-11 1.6E-15 115.5 5.1 127 6-135 524-652 (889)
33 KOG1259 Nischarin, modulator o 99.1 2.8E-11 6.1E-16 99.8 0.0 127 197-337 284-414 (490)
34 COG4886 Leucine-rich repeat (L 99.0 3.8E-10 8.3E-15 103.1 6.9 196 33-237 97-293 (394)
35 COG4886 Leucine-rich repeat (L 99.0 7.6E-10 1.7E-14 101.2 8.0 200 57-273 97-297 (394)
36 PF13855 LRR_8: Leucine rich r 99.0 3.2E-10 7E-15 73.3 3.6 61 5-65 1-61 (61)
37 KOG0531 Protein phosphatase 1, 99.0 9.4E-11 2E-15 107.3 -0.5 246 51-318 70-322 (414)
38 KOG0531 Protein phosphatase 1, 98.9 1.1E-10 2.3E-15 107.0 -0.5 247 26-294 69-322 (414)
39 KOG4658 Apoptotic ATPase [Sign 98.9 4.5E-10 9.7E-15 110.1 3.7 203 27-235 521-731 (889)
40 PF13855 LRR_8: Leucine rich r 98.9 5.1E-10 1.1E-14 72.4 2.8 61 253-313 1-61 (61)
41 KOG0532 Leucine-rich repeat (L 98.9 1.3E-10 2.9E-15 103.8 -1.5 169 105-290 79-247 (722)
42 KOG0532 Leucine-rich repeat (L 98.8 1.2E-10 2.5E-15 104.2 -3.8 169 9-186 79-247 (722)
43 KOG2120 SCF ubiquitin ligase, 98.8 2.6E-11 5.7E-16 99.9 -8.8 179 30-208 186-374 (419)
44 KOG2120 SCF ubiquitin ligase, 98.6 3.4E-10 7.3E-15 93.4 -7.3 183 126-315 186-377 (419)
45 KOG2982 Uncharacterized conser 98.6 6.2E-09 1.3E-13 86.1 0.0 207 54-267 46-263 (418)
46 KOG1859 Leucine-rich repeat pr 98.6 3.8E-10 8.2E-15 103.8 -8.2 197 77-290 84-292 (1096)
47 COG5238 RNA1 Ran GTPase-activa 98.6 2.5E-09 5.5E-14 87.2 -3.1 169 96-266 87-285 (388)
48 KOG2982 Uncharacterized conser 98.5 3.3E-08 7.2E-13 81.9 -0.0 231 31-266 47-290 (418)
49 KOG4341 F-box protein containi 98.4 3.4E-09 7.3E-14 91.6 -6.6 276 30-313 139-438 (483)
50 KOG1859 Leucine-rich repeat pr 98.4 1.6E-09 3.5E-14 99.8 -9.1 127 54-186 165-292 (1096)
51 COG5238 RNA1 Ran GTPase-activa 98.4 5.2E-09 1.1E-13 85.4 -5.3 236 76-315 29-317 (388)
52 PF13306 LRR_5: Leucine rich r 98.4 1.1E-06 2.5E-11 66.5 7.7 124 22-151 5-128 (129)
53 PF13306 LRR_5: Leucine rich r 98.4 1E-06 2.2E-11 66.8 6.9 122 1-128 8-129 (129)
54 KOG4579 Leucine-rich repeat (L 98.3 2.2E-08 4.8E-13 73.2 -3.7 137 175-322 29-167 (177)
55 KOG4341 F-box protein containi 98.3 7.7E-09 1.7E-13 89.4 -7.6 297 6-306 139-457 (483)
56 KOG3665 ZYG-1-like serine/thre 98.1 1.9E-06 4.1E-11 82.9 3.1 180 126-316 61-265 (699)
57 KOG3665 ZYG-1-like serine/thre 98.0 1.9E-06 4.1E-11 82.9 1.7 132 29-162 122-263 (699)
58 KOG1644 U2-associated snRNP A' 98.0 1.6E-05 3.5E-10 62.6 6.3 57 79-137 44-100 (233)
59 KOG1644 U2-associated snRNP A' 98.0 1.4E-05 3E-10 62.9 5.7 108 197-314 42-153 (233)
60 PF12799 LRR_4: Leucine Rich r 98.0 8.8E-06 1.9E-10 48.1 3.2 36 278-314 2-37 (44)
61 PF12799 LRR_4: Leucine Rich r 97.9 1.6E-05 3.4E-10 47.0 3.0 37 5-42 1-37 (44)
62 KOG4579 Leucine-rich repeat (L 97.8 7.5E-07 1.6E-11 65.4 -4.2 85 173-267 53-137 (177)
63 PRK15386 type III secretion pr 97.7 0.00027 5.9E-09 63.1 9.8 139 121-287 48-187 (426)
64 PRK15386 type III secretion pr 97.7 0.00024 5.2E-09 63.5 9.2 138 145-312 48-188 (426)
65 KOG1947 Leucine rich repeat pr 97.6 4.4E-06 9.4E-11 78.7 -4.1 109 52-160 187-306 (482)
66 KOG2739 Leucine-rich acidic nu 97.5 3.6E-05 7.7E-10 63.2 0.9 61 28-90 42-104 (260)
67 KOG2123 Uncharacterized conser 97.3 6.6E-06 1.4E-10 67.9 -5.3 81 4-88 18-99 (388)
68 KOG1947 Leucine rich repeat pr 97.3 1.9E-05 4.1E-10 74.4 -3.6 111 27-137 186-307 (482)
69 KOG2739 Leucine-rich acidic nu 97.2 0.00015 3.3E-09 59.6 1.2 106 173-287 43-153 (260)
70 KOG2123 Uncharacterized conser 97.1 3.1E-05 6.7E-10 64.1 -3.2 98 197-306 19-122 (388)
71 PF08693 SKG6: Transmembrane a 96.3 0.00065 1.4E-08 38.1 -0.9 27 356-382 13-39 (40)
72 PF01102 Glycophorin_A: Glycop 96.2 0.0045 9.9E-08 45.1 2.9 21 349-369 58-78 (122)
73 PF02439 Adeno_E3_CR2: Adenovi 96.0 0.017 3.7E-07 31.9 3.7 29 354-382 6-34 (38)
74 KOG3864 Uncharacterized conser 94.9 0.0021 4.5E-08 51.0 -2.9 83 198-287 102-186 (221)
75 PF00560 LRR_1: Leucine Rich R 94.8 0.013 2.9E-07 28.5 0.9 12 279-290 2-13 (22)
76 PF00560 LRR_1: Leucine Rich R 94.5 0.017 3.7E-07 28.1 0.8 12 303-314 2-13 (22)
77 PF15102 TMEM154: TMEM154 prot 94.3 0.027 6E-07 42.1 1.8 27 357-383 62-88 (146)
78 KOG4308 LRR-containing protein 94.0 0.00028 6E-09 65.3 -11.2 184 127-314 89-303 (478)
79 KOG4308 LRR-containing protein 93.8 0.00024 5.2E-09 65.7 -12.1 209 102-314 88-331 (478)
80 KOG3864 Uncharacterized conser 93.3 0.0061 1.3E-07 48.4 -3.2 82 30-111 102-186 (221)
81 PF12191 stn_TNFRSF12A: Tumour 93.1 0.038 8.1E-07 39.9 0.8 32 352-383 76-107 (129)
82 PF05454 DAG1: Dystroglycan (D 93.0 0.028 6E-07 48.0 0.0 29 355-383 148-176 (290)
83 PF04478 Mid2: Mid2 like cell 93.0 0.025 5.4E-07 42.6 -0.3 28 356-383 50-79 (154)
84 PF13504 LRR_7: Leucine rich r 92.3 0.085 1.8E-06 23.8 1.1 10 255-264 3-12 (17)
85 PF01102 Glycophorin_A: Glycop 91.8 0.23 4.9E-06 36.4 3.4 24 352-376 65-88 (122)
86 PF12877 DUF3827: Domain of un 91.3 0.16 3.5E-06 47.6 2.7 42 342-383 257-298 (684)
87 PTZ00370 STEVOR; Provisional 91.2 0.22 4.7E-06 41.9 3.2 25 357-381 259-283 (296)
88 TIGR01478 STEVOR variant surfa 91.2 0.22 4.8E-06 41.8 3.2 25 357-381 263-287 (295)
89 PF13516 LRR_6: Leucine Rich r 90.6 0.051 1.1E-06 27.0 -0.6 15 5-19 2-16 (24)
90 PTZ00382 Variant-specific surf 90.1 0.069 1.5E-06 37.5 -0.6 28 355-382 66-95 (96)
91 PF14575 EphA2_TM: Ephrin type 90.0 0.38 8.3E-06 32.0 3.0 25 357-381 3-27 (75)
92 smart00369 LRR_TYP Leucine-ric 89.9 0.32 6.8E-06 24.6 2.0 19 5-23 2-20 (26)
93 smart00370 LRR Leucine-rich re 89.9 0.32 6.8E-06 24.6 2.0 19 5-23 2-20 (26)
94 PF01034 Syndecan: Syndecan do 89.5 0.11 2.3E-06 32.7 0.0 17 355-371 13-29 (64)
95 PF08374 Protocadherin: Protoc 89.2 0.44 9.4E-06 38.3 3.2 26 353-378 36-61 (221)
96 PF02439 Adeno_E3_CR2: Adenovi 87.2 0.91 2E-05 25.2 2.7 27 357-383 5-32 (38)
97 PF08374 Protocadherin: Protoc 87.2 0.22 4.7E-06 39.9 0.4 41 340-380 26-66 (221)
98 KOG0473 Leucine-rich repeat pr 87.1 0.015 3.3E-07 47.3 -6.1 85 25-112 38-122 (326)
99 PF07213 DAP10: DAP10 membrane 87.0 2.4 5.1E-05 28.1 5.0 27 352-378 31-57 (79)
100 TIGR01477 RIFIN variant surfac 86.8 0.69 1.5E-05 40.5 3.3 28 356-383 312-339 (353)
101 PF05545 FixQ: Cbb3-type cytoc 86.8 1.1 2.4E-05 26.9 3.3 18 364-381 16-33 (49)
102 PTZ00046 rifin; Provisional 86.7 0.71 1.5E-05 40.6 3.3 28 356-383 317-344 (358)
103 KOG0473 Leucine-rich repeat pr 84.6 0.026 5.6E-07 46.0 -5.9 61 252-314 64-124 (326)
104 PTZ00208 65 kDa invariant surf 82.7 1.1 2.4E-05 39.6 2.7 35 348-382 380-414 (436)
105 PF04971 Lysis_S: Lysis protei 80.9 1.9 4.1E-05 27.6 2.6 30 354-383 32-61 (68)
106 PF01299 Lamp: Lysosome-associ 80.2 2.4 5.1E-05 37.3 4.0 7 328-334 252-258 (306)
107 PF03302 VSP: Giardia variant- 79.6 0.86 1.9E-05 41.6 1.1 32 352-383 364-397 (397)
108 PF15102 TMEM154: TMEM154 prot 79.3 0.72 1.6E-05 34.7 0.4 28 357-384 58-86 (146)
109 PF05337 CSF-1: Macrophage col 78.4 0.67 1.4E-05 38.8 0.0 24 360-383 231-254 (285)
110 TIGR01167 LPXTG_anchor LPXTG-m 78.2 3.3 7.2E-05 22.4 2.8 9 373-381 24-32 (34)
111 KOG3763 mRNA export factor TAP 77.1 1.5 3.3E-05 40.8 1.8 40 218-263 215-254 (585)
112 TIGR01478 STEVOR variant surfa 77.1 1.9 4.1E-05 36.4 2.3 27 358-384 261-287 (295)
113 PTZ00370 STEVOR; Provisional 76.4 2 4.4E-05 36.3 2.3 27 358-384 257-283 (296)
114 PF05808 Podoplanin: Podoplani 76.3 0.83 1.8E-05 35.0 0.0 34 349-382 123-156 (162)
115 PF15065 NCU-G1: Lysosomal tra 76.1 3 6.5E-05 37.1 3.3 33 352-384 317-349 (350)
116 PTZ00382 Variant-specific surf 75.8 1 2.2E-05 31.7 0.3 15 365-379 81-95 (96)
117 PF06365 CD34_antigen: CD34/Po 75.7 2.9 6.3E-05 33.8 2.9 18 364-381 112-129 (202)
118 smart00367 LRR_CC Leucine-rich 75.6 1.3 2.7E-05 22.4 0.6 12 4-15 1-12 (26)
119 PF06809 NPDC1: Neural prolife 74.7 3.5 7.6E-05 35.4 3.2 6 376-381 221-226 (341)
120 TIGR00864 PCC polycystin catio 74.3 2.5 5.3E-05 47.4 2.8 33 259-291 1-33 (2740)
121 KOG3763 mRNA export factor TAP 74.3 1.5 3.2E-05 40.9 1.1 37 195-231 216-254 (585)
122 PF14610 DUF4448: Protein of u 73.9 1.1 2.5E-05 36.1 0.2 27 357-383 159-185 (189)
123 smart00368 LRR_RI Leucine rich 73.5 1.4 3.1E-05 22.8 0.4 15 5-19 2-16 (28)
124 PF13908 Shisa: Wnt and FGF in 72.7 1.8 4E-05 34.6 1.2 20 356-375 80-99 (179)
125 PF14991 MLANA: Protein melan- 71.8 0.76 1.7E-05 32.6 -1.1 17 364-380 34-50 (118)
126 PF15176 LRR19-TM: Leucine-ric 69.9 7.8 0.00017 27.1 3.5 22 351-372 14-35 (102)
127 PF02529 PetG: Cytochrome B6-F 69.9 10 0.00022 20.9 3.2 22 356-377 5-26 (37)
128 TIGR01495 ETRAMP Plasmodium ri 69.7 5.6 0.00012 27.1 2.8 29 355-383 52-80 (85)
129 smart00365 LRR_SD22 Leucine-ri 68.8 4.9 0.00011 20.4 1.8 14 301-314 2-15 (26)
130 TIGR03867 MprA_tail MprA prote 67.9 6.8 0.00015 19.9 2.1 20 363-382 8-27 (27)
131 PF14283 DUF4366: Domain of un 67.9 3.2 6.9E-05 34.2 1.6 10 370-379 172-181 (218)
132 KOG4242 Predicted myosin-I-bin 67.5 30 0.00065 32.1 7.5 37 252-288 439-479 (553)
133 PF07010 Endomucin: Endomucin; 67.3 10 0.00022 30.9 4.1 25 357-381 193-217 (259)
134 PF09716 ETRAMP: Malarial earl 66.4 10 0.00022 25.9 3.5 29 355-383 56-84 (84)
135 PF12301 CD99L2: CD99 antigen 66.4 8.7 0.00019 30.2 3.6 27 355-381 115-142 (169)
136 PHA03099 epidermal growth fact 66.3 9.5 0.00021 28.0 3.4 28 355-382 104-131 (139)
137 KOG4242 Predicted myosin-I-bin 66.2 79 0.0017 29.5 9.8 38 275-312 438-479 (553)
138 PF07204 Orthoreo_P10: Orthore 65.3 4 8.7E-05 27.9 1.4 18 363-381 50-67 (98)
139 PF01034 Syndecan: Syndecan do 63.6 2.5 5.4E-05 26.8 0.1 21 355-375 9-29 (64)
140 smart00364 LRR_BAC Leucine-ric 63.5 5.5 0.00012 20.2 1.3 15 222-236 3-17 (26)
141 PF05454 DAG1: Dystroglycan (D 62.8 2.4 5.3E-05 36.5 0.0 31 354-384 144-174 (290)
142 PHA03283 envelope glycoprotein 62.8 18 0.00039 33.7 5.4 24 356-379 401-424 (542)
143 PF10883 DUF2681: Protein of u 62.7 5 0.00011 27.5 1.4 21 361-381 7-27 (87)
144 PF14654 Epiglycanin_C: Mucin, 62.0 21 0.00046 24.7 4.3 26 355-380 19-44 (106)
145 PRK06287 cobalt transport prot 59.8 15 0.00033 26.4 3.6 30 354-383 77-106 (107)
146 cd01324 cbb3_Oxidase_CcoQ Cyto 58.6 19 0.00042 21.5 3.3 14 369-382 23-36 (48)
147 PF02480 Herpes_gE: Alphaherpe 58.5 3.2 7E-05 38.4 0.0 28 355-382 355-382 (439)
148 CHL00008 petG cytochrome b6/f 58.0 17 0.00037 19.9 2.6 18 357-374 6-23 (37)
149 PF02009 Rifin_STEVOR: Rifin/s 57.8 9 0.00019 33.3 2.5 20 364-383 264-283 (299)
150 PHA03164 hypothetical protein; 57.6 15 0.00032 24.0 2.8 15 356-370 62-76 (88)
151 PF06679 DUF1180: Protein of u 56.7 34 0.00074 26.8 5.3 21 360-380 100-120 (163)
152 PHA03265 envelope glycoprotein 56.6 5.8 0.00012 34.6 1.2 21 359-379 356-376 (402)
153 PRK00665 petG cytochrome b6-f 55.8 20 0.00044 19.6 2.7 17 357-373 6-22 (37)
154 TIGR00864 PCC polycystin catio 55.0 12 0.00025 42.5 3.3 36 283-318 1-36 (2740)
155 PF12768 Rax2: Cortical protei 54.3 12 0.00026 32.4 2.7 26 358-383 234-259 (281)
156 PF15012 DUF4519: Domain of un 54.2 7.5 0.00016 23.9 1.1 25 357-381 30-54 (56)
157 PF06365 CD34_antigen: CD34/Po 53.9 9.9 0.00022 30.8 2.0 30 354-383 99-128 (202)
158 TIGR02595 PEP_exosort PEP-CTER 53.1 19 0.00041 18.2 2.3 9 373-381 15-23 (26)
159 COG4736 CcoQ Cbb3-type cytochr 52.7 19 0.00042 22.7 2.7 17 366-382 18-34 (60)
160 PF07213 DAP10: DAP10 membrane 52.6 38 0.00083 22.6 4.2 35 349-383 32-66 (79)
161 PF06697 DUF1191: Protein of u 51.8 6.2 0.00014 33.6 0.6 31 349-379 207-238 (278)
162 KOG1094 Discoidin domain recep 51.0 11 0.00024 35.9 2.1 42 337-378 372-414 (807)
163 TIGR00847 ccoS cytochrome oxid 50.0 35 0.00075 20.7 3.4 16 364-379 12-27 (51)
164 PF06596 PsbX: Photosystem II 49.8 33 0.00072 19.4 3.1 22 356-377 8-30 (39)
165 PHA02844 putative transmembran 49.2 56 0.0012 21.5 4.4 13 365-377 57-69 (75)
166 PF10661 EssA: WXG100 protein 49.2 24 0.00052 27.0 3.4 22 352-373 116-137 (145)
167 CHL00114 psbX photosystem II p 49.0 24 0.00052 19.8 2.4 16 355-370 7-22 (39)
168 PF13703 PepSY_TM_2: PepSY-ass 48.2 27 0.00059 24.0 3.3 23 356-378 17-39 (88)
169 TIGR01477 RIFIN variant surfac 47.6 17 0.00037 32.2 2.6 34 351-384 310-343 (353)
170 PF08999 SP_C-Propep: Surfacta 47.4 35 0.00076 22.7 3.4 11 365-375 44-54 (93)
171 PF03597 CcoS: Cytochrome oxid 46.9 38 0.00082 19.9 3.2 16 364-379 11-26 (45)
172 PTZ00046 rifin; Provisional 46.5 18 0.00039 32.2 2.6 34 351-384 315-348 (358)
173 PF14851 FAM176: FAM176 family 46.4 23 0.0005 27.3 2.9 27 352-378 22-48 (153)
174 PF06667 PspB: Phage shock pro 45.5 37 0.0008 22.6 3.3 14 367-380 16-29 (75)
175 PF05393 Hum_adeno_E3A: Human 45.2 13 0.00028 25.2 1.2 22 363-384 38-59 (94)
176 PF13940 Ldr_toxin: Toxin Ldr, 44.3 36 0.00077 18.3 2.5 17 364-380 18-34 (35)
177 KOG1219 Uncharacterized conser 43.8 45 0.00098 37.7 5.3 19 364-382 4001-4019(4289)
178 PF11118 DUF2627: Protein of u 43.7 49 0.0011 21.9 3.6 30 354-383 40-69 (77)
179 PF10873 DUF2668: Protein of u 42.6 10 0.00023 28.4 0.5 20 357-376 63-82 (155)
180 TIGR02976 phageshock_pspB phag 42.4 41 0.00089 22.4 3.2 6 373-378 22-27 (75)
181 PF01708 Gemini_mov: Geminivir 41.1 22 0.00048 24.3 1.8 16 361-376 42-57 (91)
182 PF09777 OSTMP1: Osteopetrosis 40.4 41 0.00088 28.3 3.8 15 369-383 205-219 (237)
183 PF12259 DUF3609: Protein of u 40.4 20 0.00043 32.3 2.1 9 371-379 313-321 (361)
184 PF02060 ISK_Channel: Slow vol 39.3 41 0.00089 24.8 3.1 26 355-380 44-69 (129)
185 PRK01844 hypothetical protein; 39.3 43 0.00093 21.9 2.8 8 369-376 17-24 (72)
186 PHA03286 envelope glycoprotein 39.3 27 0.00059 31.9 2.6 12 371-382 409-420 (492)
187 PRK00523 hypothetical protein; 39.1 44 0.00096 21.9 2.9 11 366-376 15-25 (72)
188 PF11157 DUF2937: Protein of u 38.0 56 0.0012 25.8 4.0 29 356-384 139-167 (167)
189 PRK11486 flagellar biosynthesi 37.6 58 0.0013 24.1 3.7 17 364-380 25-41 (124)
190 PF11980 DUF3481: Domain of un 37.5 68 0.0015 21.7 3.6 19 361-379 24-42 (87)
191 COG0713 NuoK NADH:ubiquinone o 37.2 60 0.0013 22.8 3.5 27 356-382 63-89 (100)
192 PF04835 Pox_A9: A9 protein co 36.7 1E+02 0.0022 18.8 3.9 31 352-382 21-51 (54)
193 PF10577 UPF0560: Uncharacteri 36.4 41 0.00089 33.4 3.5 17 365-381 284-300 (807)
194 PF05283 MGC-24: Multi-glycosy 35.6 80 0.0017 25.4 4.5 13 357-369 163-175 (186)
195 TIGR03521 GldG gliding-associa 35.5 37 0.00081 32.8 3.2 14 369-382 537-550 (552)
196 PF11353 DUF3153: Protein of u 34.9 35 0.00075 28.1 2.5 17 365-381 190-206 (209)
197 PHA02935 Hypothetical protein; 34.8 74 0.0016 25.5 4.2 30 352-381 313-342 (349)
198 KOG3839 Lectin VIP36, involved 34.7 28 0.0006 30.5 1.9 23 358-380 320-342 (351)
199 TIGR03370 PEPCTERM_Roseo varia 34.0 49 0.0011 16.8 2.0 10 372-381 15-24 (26)
200 COG3889 Predicted solute bindi 33.7 31 0.00068 33.9 2.3 26 356-381 845-870 (872)
201 PRK15348 type III secretion sy 31.8 56 0.0012 27.7 3.3 20 361-380 229-248 (249)
202 TIGR03503 conserved hypothetic 31.5 18 0.00039 32.5 0.3 25 358-382 349-373 (374)
203 PF13706 PepSY_TM_3: PepSY-ass 30.8 78 0.0017 17.6 2.8 24 356-379 9-32 (37)
204 PF04639 Baculo_E56: Baculovir 30.0 60 0.0013 27.8 3.1 7 373-379 294-300 (305)
205 PF14257 DUF4349: Domain of un 29.7 65 0.0014 27.6 3.5 11 369-379 251-261 (262)
206 TIGR03141 cytochro_ccmD heme e 29.3 79 0.0017 18.5 2.7 9 360-368 10-18 (45)
207 PF15117 UPF0697: Uncharacteri 29.2 23 0.00051 23.8 0.5 15 369-383 26-40 (99)
208 PF07584 BatA: Aerotolerance r 29.0 74 0.0016 21.2 2.9 9 374-382 22-30 (77)
209 PF02656 DUF202: Domain of unk 28.4 75 0.0016 20.8 2.9 25 356-380 46-70 (73)
210 COG3088 CcmH Uncharacterized p 28.1 97 0.0021 23.8 3.6 28 354-381 103-130 (153)
211 PF05356 Phage_Coat_B: Phage C 28.0 84 0.0018 20.7 2.8 21 357-377 59-79 (83)
212 COG3197 FixS Uncharacterized p 27.7 64 0.0014 20.1 2.1 13 364-376 12-24 (58)
213 PF14610 DUF4448: Protein of u 27.5 22 0.00048 28.7 0.2 29 354-382 159-187 (189)
214 PHA02681 ORF089 virion membran 27.1 84 0.0018 21.1 2.7 14 366-379 13-26 (92)
215 PF14979 TMEM52: Transmembrane 26.3 1.1E+02 0.0023 23.3 3.5 14 369-382 37-50 (154)
216 PF03918 CcmH: Cytochrome C bi 26.2 22 0.00048 27.3 0.0 26 357-382 102-127 (148)
217 COG1862 YajC Preprotein transl 25.5 46 0.001 23.5 1.5 10 370-379 19-28 (97)
218 PF11240 DUF3042: Protein of u 25.5 89 0.0019 19.2 2.5 23 357-379 5-27 (54)
219 PF11884 DUF3404: Domain of un 25.3 69 0.0015 27.2 2.7 13 367-379 242-254 (262)
220 PRK10132 hypothetical protein; 25.1 93 0.002 22.5 3.0 16 364-379 92-107 (108)
221 KOG3653 Transforming growth fa 24.8 1.1E+02 0.0024 28.6 4.1 8 374-381 175-182 (534)
222 PF02430 AMA-1: Apical membran 24.7 25 0.00053 32.2 0.0 21 358-378 432-452 (471)
223 TIGR03068 srtB_sig_NPQTN sorta 24.7 1.3E+02 0.0028 16.2 3.4 6 374-379 26-31 (33)
224 PF14126 DUF4293: Domain of un 24.5 62 0.0013 25.0 2.1 24 360-383 57-80 (149)
225 PRK15471 chain length determin 24.3 1.4E+02 0.003 26.6 4.5 28 355-383 297-324 (325)
226 PF06809 NPDC1: Neural prolife 24.1 84 0.0018 27.4 3.0 27 357-384 200-226 (341)
227 KOG4482 Sarcoglycan complex, a 24.1 1E+02 0.0022 27.6 3.5 21 360-380 303-323 (449)
228 PF15099 PIRT: Phosphoinositid 23.5 58 0.0013 24.0 1.7 17 357-373 82-98 (129)
229 PRK10381 LPS O-antigen length 23.2 1.2E+02 0.0026 27.7 4.1 26 353-378 339-364 (377)
230 PF04341 DUF485: Protein of un 23.2 90 0.002 21.6 2.6 19 361-379 57-75 (91)
231 PF13179 DUF4006: Family of un 22.3 1.5E+02 0.0032 19.2 3.1 11 358-368 14-24 (66)
232 PF13268 DUF4059: Protein of u 22.0 1.4E+02 0.003 19.6 2.9 10 370-379 22-31 (72)
233 PF02404 SCF: Stem cell factor 21.9 30 0.00065 29.0 0.0 18 364-381 224-241 (273)
234 PRK05585 yajC preprotein trans 21.9 63 0.0014 23.2 1.6 6 374-379 32-37 (106)
235 PRK09459 pspG phage shock prot 21.5 1.7E+02 0.0037 19.4 3.3 11 369-379 53-63 (76)
236 PRK08389 putative monovalent c 21.1 2E+02 0.0044 21.0 4.2 12 354-365 74-85 (114)
237 PF15048 OSTbeta: Organic solu 20.8 1.5E+02 0.0032 21.9 3.3 21 364-384 45-65 (125)
238 PRK10920 putative uroporphyrin 20.7 1.4E+02 0.003 27.4 3.9 21 359-379 39-59 (390)
239 PF15145 DUF4577: Domain of un 20.4 3.3E+02 0.0073 19.6 4.8 8 355-362 62-69 (128)
240 PF02124 Marek_A: Marek's dise 20.3 81 0.0018 25.9 2.1 28 349-376 180-207 (211)
241 PF13314 DUF4083: Domain of un 20.2 2.1E+02 0.0045 17.9 3.3 17 358-374 9-25 (58)
242 COG1622 CyoA Heme/copper-type 20.1 94 0.002 26.4 2.6 13 369-381 50-62 (247)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.3e-41 Score=339.56 Aligned_cols=340 Identities=38% Similarity=0.604 Sum_probs=243.4
Q ss_pred CCCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCE
Q 044133 2 GRLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHV 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 81 (384)
.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.++++|+.|++++|.+....+..+.++++|++
T Consensus 209 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 288 (968)
T PLN00113 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS 288 (968)
T ss_pred cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCE
Confidence 45677777777777777667777777777777777777777667777777777777777777776666666666777777
Q ss_pred EECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccc
Q 044133 82 LDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKL 161 (384)
Q Consensus 82 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 161 (384)
|++++|.+....|..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus 289 L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred EECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 77777766655666666666666666666666655555566666666666666666555555555555555555555554
Q ss_pred cC------------------------CCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccC
Q 044133 162 EG------------------------PIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSV 217 (384)
Q Consensus 162 ~~------------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 217 (384)
.+ ..+..+..+++|+.|++++|.+.+..+..+..++.|+.|++++|.++...+..+
T Consensus 369 ~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 448 (968)
T PLN00113 369 TGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448 (968)
T ss_pred EeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh
Confidence 43 344444555566666666666555555556666666666666666655555555
Q ss_pred CCCCCCCeeecCCCCCC---------------CCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEE
Q 044133 218 GHLNFLQDLDLSNNKLE---------------DLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYL 282 (384)
Q Consensus 218 ~~l~~L~~L~l~~n~~~---------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 282 (384)
..+++|+.|++++|.+. ++..+.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|
T Consensus 449 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 528 (968)
T PLN00113 449 WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528 (968)
T ss_pred ccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEE
Confidence 56666777777766543 233444555666778888999999999999998888899999999999
Q ss_pred ecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccCccc---cCCCeEEcccCcCCCCCCCC
Q 044133 283 DLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFV---RKVPHLDVSGNKFGGEIPTT 341 (384)
Q Consensus 283 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~---~~l~~l~l~~~~~~~~~p~~ 341 (384)
++++|.+++.+|..+..+++|+.|++++|++++.+|..+ .+|+.+++++|+++|.+|..
T Consensus 529 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 529 DLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred ECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence 999999999999999999999999999999999888654 56899999999999888753
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.9e-38 Score=319.05 Aligned_cols=341 Identities=39% Similarity=0.605 Sum_probs=281.6
Q ss_pred CCCCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCC
Q 044133 1 MGRLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLH 80 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 80 (384)
|.++++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+....+..+.++++|+
T Consensus 184 ~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 263 (968)
T PLN00113 184 LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263 (968)
T ss_pred hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCC
Confidence 35789999999999999988899999999999999999999988999999999999999999999888888999999999
Q ss_pred EEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeeccccc
Q 044133 81 VLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNK 160 (384)
Q Consensus 81 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 160 (384)
+|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 264 ~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred EEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 99999999987888889999999999999999988888889999999999999999988888889999999999999999
Q ss_pred ccCCCCccccCcCCCCeeecccccccCCCCccccC------------------------CCCCCEEEccCCcccccCCcc
Q 044133 161 LEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGH------------------------LNRLTDLDLSENKLVGPIPSS 216 (384)
Q Consensus 161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------------------------~~~L~~L~l~~~~~~~~~~~~ 216 (384)
+.+..+..+..+++|+.|++++|.+....+..+.. +++|+.|++++|.++...+..
T Consensus 344 l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~ 423 (968)
T PLN00113 344 FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE 423 (968)
T ss_pred CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh
Confidence 98888888888889999998888776544444444 455555555555555445555
Q ss_pred CCCCCCCCeeecCCCCCCCC----------------CCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCcccc
Q 044133 217 VGHLNFLQDLDLSNNKLEDL----------------SDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLC 280 (384)
Q Consensus 217 ~~~l~~L~~L~l~~n~~~~~----------------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 280 (384)
+..+++|+.|++++|.+... ..+.+.+..|..+ ..++|+.|++++|.+++..+..+..+++|+
T Consensus 424 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 502 (968)
T PLN00113 424 FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELM 502 (968)
T ss_pred HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccC
Confidence 55666666666666654421 1122222223222 246677888888888877788888899999
Q ss_pred EEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccCccc---cCCCeEEcccCcCCCCCCCCC
Q 044133 281 YLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFV---RKVPHLDVSGNKFGGEIPTTL 342 (384)
Q Consensus 281 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~---~~l~~l~l~~~~~~~~~p~~~ 342 (384)
.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+ ++|+.+++++|.+++..|...
T Consensus 503 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 567 (968)
T PLN00113 503 QLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL 567 (968)
T ss_pred EEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence 99999999998899999999999999999999999888654 578999999999999888754
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-37 Score=268.04 Aligned_cols=329 Identities=26% Similarity=0.284 Sum_probs=200.9
Q ss_pred CCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEE
Q 044133 4 LRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLD 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 83 (384)
+++|+++++..|.++ ..|.......+|+.|+|.+|.+.....+.++.++.|+.||++.|.+..+....|..-.++++|+
T Consensus 101 l~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 101 LPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred CCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence 444444444444444 2233233333444444444444444444445555555555555555544444454445555566
Q ss_pred CcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccC
Q 044133 84 LSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEG 163 (384)
Q Consensus 84 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 163 (384)
+++|.|+......|..+.+|..|.++.|+++......|.++++|+.|++..|.+.-....+|.++++|+.|.+..|++..
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc
Confidence 65555555555555555566666666666655555555556666666666665553333455566666666666666655
Q ss_pred CCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccC
Q 044133 164 PIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDG 243 (384)
Q Consensus 164 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 243 (384)
.....|..+..+++|+++.|++......++.++++|+.|++++|.+..+..+.+..+++|++|++++|.+..++.
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~----- 334 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE----- 334 (873)
T ss_pred ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh-----
Confidence 555566666666666666666666666666777777777777777777777777777777777777777766654
Q ss_pred CCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCC---chhhcCCCCCcEEeCCCCcccc---cc
Q 044133 244 PIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKI---PYQLGAIPGIHTVDLSMNNLSG---GI 317 (384)
Q Consensus 244 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~l~~~~~L~~L~l~~n~~~~---~~ 317 (384)
..|..+..|++|+|++|.++.....+|..+++|++|||+.|.+...+ ...|.++++|+.|++.||++.. ..
T Consensus 335 ---~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krA 411 (873)
T KOG4194|consen 335 ---GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRA 411 (873)
T ss_pred ---hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhh
Confidence 34445677777777777777666667777788888888888765332 3456778888888888887653 23
Q ss_pred CccccCCCeEEcccCcCCCCCCCC
Q 044133 318 PVFVRKVPHLDVSGNKFGGEIPTT 341 (384)
Q Consensus 318 ~~~~~~l~~l~l~~~~~~~~~p~~ 341 (384)
...+..|+.|++.+|.+-..-|..
T Consensus 412 fsgl~~LE~LdL~~NaiaSIq~nA 435 (873)
T KOG4194|consen 412 FSGLEALEHLDLGDNAIASIQPNA 435 (873)
T ss_pred hccCcccceecCCCCcceeecccc
Confidence 345667788888887776544443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.7e-36 Score=262.29 Aligned_cols=322 Identities=26% Similarity=0.274 Sum_probs=287.4
Q ss_pred CCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEEC
Q 044133 5 RNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDL 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 84 (384)
+.-+.|++++|.+....+..|.++++|+++++..|.++ .+|.......+|+.|++.+|.|+++....++.++.|++||+
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 34567999999999888889999999999999999988 55554445567999999999999887788999999999999
Q ss_pred cCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCC
Q 044133 85 SRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGP 164 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 164 (384)
+.|.+.......|..-.++++|++++|++++...+.|..+.+|..|.++.|+++..++..|..++.|+.|++..|.+.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 99999866556677678999999999999999999999999999999999999988889999999999999999998865
Q ss_pred CCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCC
Q 044133 165 IPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGP 244 (384)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 244 (384)
..-.|.++++|+.|.+.+|.+.......|..+.++++|++..|++......++.++.+|+.|++++|.|..+..
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~------ 310 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHI------ 310 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeec------
Confidence 56779999999999999999998888999999999999999999998888899999999999999999876644
Q ss_pred CCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccC------
Q 044133 245 IPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP------ 318 (384)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~------ 318 (384)
...+.+++|++|+|+.|.++...+..|..+..|+.|+|+.|.+.-.-..+|..+.+|++||++.|.++..+.
T Consensus 311 --d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f 388 (873)
T KOG4194|consen 311 --DSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAF 388 (873)
T ss_pred --chhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhh
Confidence 345557999999999999999999999999999999999999996667889999999999999999875432
Q ss_pred ccccCCCeEEcccCcCC
Q 044133 319 VFVRKVPHLDVSGNKFG 335 (384)
Q Consensus 319 ~~~~~l~~l~l~~~~~~ 335 (384)
..+++|+.|.+.||++-
T Consensus 389 ~gl~~LrkL~l~gNqlk 405 (873)
T KOG4194|consen 389 NGLPSLRKLRLTGNQLK 405 (873)
T ss_pred ccchhhhheeecCceee
Confidence 34778999999999987
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=6.2e-30 Score=227.08 Aligned_cols=315 Identities=31% Similarity=0.448 Sum_probs=229.9
Q ss_pred CCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccc-cCCcccCCCCCCCEE
Q 044133 4 LRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQING-SIPLEIENLKVLHVL 82 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L 82 (384)
+.+++-|.+.+.++. ..|+.++.|.+|++|.+.+|++. ...+.++.+|.|+.+.+.+|++.. -.|..+..+..|..|
T Consensus 31 Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~l 108 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTIL 108 (1255)
T ss_pred hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceee
Confidence 334455555555554 45566777778888888887776 344557778888888888887752 356666788999999
Q ss_pred ECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeeccccccc
Q 044133 83 DLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLE 162 (384)
Q Consensus 83 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 162 (384)
|+++|++. ..|..+...+++-+|++++|++.++....|.+++.|-.|++++|.+.. .|+....+..|++|.+++|.+.
T Consensus 109 DLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~ 186 (1255)
T KOG0444|consen 109 DLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLN 186 (1255)
T ss_pred ecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhh
Confidence 99999988 778888888999999999999987777778889999999999999984 5566788889999999999876
Q ss_pred CCCCccccCcCCCCeeeccccccc-CCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcc
Q 044133 163 GPIPSTIASLVNLKSLSLHYNNLI-GPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKL 241 (384)
Q Consensus 163 ~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 241 (384)
.....-+..+++|+.|++++.+-+ ...|..+..+.+|..++++.|.+. ..|+++..+++|+.|++++|+++++..+
T Consensus 187 hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~-- 263 (1255)
T KOG0444|consen 187 HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMT-- 263 (1255)
T ss_pred HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeecc--
Confidence 554445566677888888876543 345667778888899999988876 6778888889999999999988866432
Q ss_pred cCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecC-------------------------CCcCCCCCchh
Q 044133 242 DGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLS-------------------------GNSINGKIPYQ 296 (384)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~-------------------------~n~~~~~~~~~ 296 (384)
.....+|++|+++.|+++ ..|.+++.++.|+.|.+. +|.+. .+|++
T Consensus 264 -------~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEg 334 (1255)
T KOG0444|consen 264 -------EGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEG 334 (1255)
T ss_pred -------HHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchh
Confidence 122345555555555555 444555555555444444 44443 56777
Q ss_pred hcCCCCCcEEeCCCCccccccC---ccccCCCeEEcccCcCC
Q 044133 297 LGAIPGIHTVDLSMNNLSGGIP---VFVRKVPHLDVSGNKFG 335 (384)
Q Consensus 297 l~~~~~L~~L~l~~n~~~~~~~---~~~~~l~~l~l~~~~~~ 335 (384)
++.|+.|+.|.++.|.+.+ +| ..++.++.||+..|+-.
T Consensus 335 lcRC~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhhHHHHHhcccccceee-chhhhhhcCCcceeeccCCcCc
Confidence 8888888888888888764 33 44678889999888754
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=8.7e-28 Score=213.56 Aligned_cols=329 Identities=29% Similarity=0.382 Sum_probs=216.0
Q ss_pred CCCCCCEEeccCCcCcc-CCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCE
Q 044133 3 RLRNLVHLDLSNNHLTG-HIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHV 81 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 81 (384)
.+|.||.+.+.+|++.. -.|..+-++..|..|+|+.|.+. ..|..+...+++-.|++++|+|.++....|.++..|-.
T Consensus 76 ~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLf 154 (1255)
T KOG0444|consen 76 DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLF 154 (1255)
T ss_pred cchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhh
Confidence 34444444444444321 12233444555555555555554 44444555555555555555555444444555555555
Q ss_pred EECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCc-ccCCccccCCcccceeeccccc
Q 044133 82 LDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRIN-GSIPLEIGNLNFLQVLGLSDNK 160 (384)
Q Consensus 82 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 160 (384)
||+++|.+. ..|..+..+.+|++|.+++|.+.-....-+..+++|+.|.+++.+-+ .-.|.++..+.+|..++++.|+
T Consensus 155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~ 233 (1255)
T KOG0444|consen 155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN 233 (1255)
T ss_pred hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence 666665555 44445555666666666666654333333444556666666654432 2355666777788888888888
Q ss_pred ccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCc
Q 044133 161 LEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNK 240 (384)
Q Consensus 161 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 240 (384)
+. ..|+.+..+++|+.|++++|.+++. ......-.+|++|+++.|+++ ..|+++..++.|+.|...+|++.-
T Consensus 234 Lp-~vPecly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~F----- 305 (1255)
T KOG0444|consen 234 LP-IVPECLYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTF----- 305 (1255)
T ss_pred CC-cchHHHhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccc-----
Confidence 76 6778888888888888888888753 223344467888888888887 677888888899999888887643
Q ss_pred ccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccC--
Q 044133 241 LDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP-- 318 (384)
Q Consensus 241 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-- 318 (384)
+.+|+.++.+.+|+.+..++|++. ..|+.++.|..|+.|.|+.|.+. .+|+++.-++.|+.||+.+|+----.|
T Consensus 306 --eGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP 381 (1255)
T KOG0444|consen 306 --EGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKP 381 (1255)
T ss_pred --cCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCc
Confidence 234677888999999999999887 78899999999999999999998 789999999999999999998442222
Q ss_pred -ccccCCCeEEccc-----CcCCCCCCCCCCCC
Q 044133 319 -VFVRKVPHLDVSG-----NKFGGEIPTTLANA 345 (384)
Q Consensus 319 -~~~~~l~~l~l~~-----~~~~~~~p~~~~~~ 345 (384)
..-.+++.-++.. -.+-|+.|....++
T Consensus 382 ~da~~~lefYNIDFSLq~QlrlAG~~pasv~~s 414 (1255)
T KOG0444|consen 382 NDARKKLEFYNIDFSLQHQLRLAGQMPASVISS 414 (1255)
T ss_pred chhhhcceeeecceehhhHHhhccCCccccccc
Confidence 1123444443321 23456666655443
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=4.4e-27 Score=198.39 Aligned_cols=148 Identities=34% Similarity=0.557 Sum_probs=81.0
Q ss_pred CCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECc
Q 044133 6 NLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLS 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 85 (384)
++..+++.+|.++...+..+. ++.|++|+...|.++ ..|..++.+..|..|++..|++. ..| .|.+|..|+++..+
T Consensus 161 ~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g 236 (565)
T KOG0472|consen 161 KLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVG 236 (565)
T ss_pred HHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhc
Confidence 344445555555533333333 566666666555555 44455566666666666666665 333 45566666666666
Q ss_pred CCcccccCCcC-CCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccc
Q 044133 86 RNEIGGSIPST-IGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKL 161 (384)
Q Consensus 86 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 161 (384)
.|++. ..+.. ...++++.+|++++|+++ ..|+.+.-+++|+.||+++|.++ ..+..++++ .|+.|.+.+|.+
T Consensus 237 ~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 237 ENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred ccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCch
Confidence 66655 33332 335666666666666665 44455555566666666666665 234455555 555555555543
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=2.7e-26 Score=193.67 Aligned_cols=322 Identities=34% Similarity=0.507 Sum_probs=202.7
Q ss_pred CCCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCE
Q 044133 2 GRLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHV 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 81 (384)
.++..+.+|++++|++. ..|.++.++..++.++.+.|++. ..|..+...+.|++++.+.|... ..++.+..+-.++.
T Consensus 65 ~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~d 141 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLED 141 (565)
T ss_pred hcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhh
Confidence 35667788888888776 45555666666666666666665 44555555566666666665554 33333444444444
Q ss_pred EECcCCcccccCCcCCCC-----------------------CCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCc
Q 044133 82 LDLSRNEIGGSIPSTIGH-----------------------LKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRIN 138 (384)
Q Consensus 82 L~l~~~~~~~~~~~~~~~-----------------------l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 138 (384)
++..+|++. ..|.++.. ++.|++|++.+|.+. ..|..++.+.+|..|++..|.+.
T Consensus 142 l~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~ 219 (565)
T KOG0472|consen 142 LDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR 219 (565)
T ss_pred hhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc
Confidence 444444443 22222222 455666666655554 44556666777777777777776
Q ss_pred ccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCC
Q 044133 139 GSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVG 218 (384)
Q Consensus 139 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 218 (384)
. .| .|.++..|++++++.|.+.-...+...+++++..|++.+|+++ ..|..++.+.+|+.|++++|.++ ..+..++
T Consensus 220 ~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLg 295 (565)
T KOG0472|consen 220 F-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLG 295 (565)
T ss_pred c-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccc
Confidence 2 33 5677777777777777766433344457777788888888776 35566677777888888887777 4455677
Q ss_pred CCCCCCeeecCCCCCC----------------------------------------------------------------
Q 044133 219 HLNFLQDLDLSNNKLE---------------------------------------------------------------- 234 (384)
Q Consensus 219 ~l~~L~~L~l~~n~~~---------------------------------------------------------------- 234 (384)
++ +|++|.+.||++.
T Consensus 296 nl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~ql 374 (565)
T KOG0472|consen 296 NL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQL 374 (565)
T ss_pred cc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccc
Confidence 77 7777777777654
Q ss_pred -------------------CCC-----------------------CCcccCCCCccccCCCCCcEEEccCCcccCCCCch
Q 044133 235 -------------------DLS-----------------------DNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQ 272 (384)
Q Consensus 235 -------------------~~~-----------------------~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 272 (384)
+++ .+..-+.++..++.+++|..|++++|-+. ..|..
T Consensus 375 t~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e 453 (565)
T KOG0472|consen 375 TLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEE 453 (565)
T ss_pred ccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchh
Confidence 000 00111123345566788999999998887 56666
Q ss_pred hcCCccccEEecCCCcCCCCCch------------------------hhcCCCCCcEEeCCCCccccccC--ccccCCCe
Q 044133 273 IGKLQKLCYLDLSGNSINGKIPY------------------------QLGAIPGIHTVDLSMNNLSGGIP--VFVRKVPH 326 (384)
Q Consensus 273 ~~~~~~L~~L~l~~n~~~~~~~~------------------------~l~~~~~L~~L~l~~n~~~~~~~--~~~~~l~~ 326 (384)
++....|+.|+++.|.|. ..|. .+.++.+|..||+.+|.+....| ....++++
T Consensus 454 ~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~h 532 (565)
T KOG0472|consen 454 MGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRH 532 (565)
T ss_pred hhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeE
Confidence 777788999999988776 3333 35566677777777777764333 23456777
Q ss_pred EEcccCcCC
Q 044133 327 LDVSGNKFG 335 (384)
Q Consensus 327 l~l~~~~~~ 335 (384)
++++||+|.
T Consensus 533 LeL~gNpfr 541 (565)
T KOG0472|consen 533 LELDGNPFR 541 (565)
T ss_pred EEecCCccC
Confidence 777777776
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=4.3e-21 Score=195.12 Aligned_cols=265 Identities=24% Similarity=0.254 Sum_probs=119.8
Q ss_pred CcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccC
Q 044133 55 LTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHS 134 (384)
Q Consensus 55 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 134 (384)
|+.|.+.++.+. ..|..| ...+|++|++.++.+. ..+..+..+++|+.|+++++......+ .+..+++|+.|++.+
T Consensus 591 Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~ 666 (1153)
T PLN03210 591 LRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSD 666 (1153)
T ss_pred cEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecC
Confidence 455555444443 223333 2344555555554444 233334444555555554443222222 233444555555544
Q ss_pred CcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCC
Q 044133 135 NRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIP 214 (384)
Q Consensus 135 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 214 (384)
|......+..+..+++|+.|++++|......+..+ .+++|+.|++++|......+. ...+|++|++++|.+.....
T Consensus 667 c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~ 742 (1153)
T PLN03210 667 CSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPS 742 (1153)
T ss_pred CCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccccc
Confidence 44333334444444555555555443222222222 344445555544432222111 12344444444444332111
Q ss_pred -----------------------------ccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcc
Q 044133 215 -----------------------------SSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLL 265 (384)
Q Consensus 215 -----------------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 265 (384)
..+...++|+.|++++|... ..+|..+.++++|+.|++++|..
T Consensus 743 ~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l--------~~lP~si~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 743 NLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL--------VELPSSIQNLHKLEHLEIENCIN 814 (1153)
T ss_pred cccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc--------cccChhhhCCCCCCEEECCCCCC
Confidence 11112345555555555311 12334555666666666666643
Q ss_pred cCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccCc---cccCCCeEEcccCcCCCCCCC
Q 044133 266 SGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPV---FVRKVPHLDVSGNKFGGEIPT 340 (384)
Q Consensus 266 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~---~~~~l~~l~l~~~~~~~~~p~ 340 (384)
.+..|... .+++|++|++++|......|.. .++|+.|++++|.++. +|. .+.+|+.+++++|+--..+|.
T Consensus 815 L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~ 887 (1153)
T PLN03210 815 LETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSL 887 (1153)
T ss_pred cCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCCCCcc-ChHHHhcCCCCCEEECCCCCCcCccCc
Confidence 33333333 4566666666666444333332 2456677777776653 332 345677777777553333443
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=5.1e-21 Score=194.55 Aligned_cols=284 Identities=25% Similarity=0.297 Sum_probs=154.5
Q ss_pred CCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEEC
Q 044133 5 RNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDL 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 84 (384)
++|+.|.+.++.++ ..|..| .+.+|++|++.++.+. ..+..+..+++|+.|+++++......| .+..+++|+.|++
T Consensus 589 ~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L 664 (1153)
T PLN03210 589 PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKL 664 (1153)
T ss_pred cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEe
Confidence 35778888777766 344444 4577888888877766 455566777888888887765433333 3667778888888
Q ss_pred cCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCC
Q 044133 85 SRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGP 164 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 164 (384)
++|......|..+..+++|+.|++++|......+..+ ++++|+.|++++|......+. ...+|+.|+++++.+..
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~- 739 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE- 739 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-
Confidence 8776555666777777888888888775433444433 567777777777754333322 23466777777776542
Q ss_pred CCccccCcCCCCeeecccccccC-------CCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCC-CCCC
Q 044133 165 IPSTIASLVNLKSLSLHYNNLIG-------PIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNK-LEDL 236 (384)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~ 236 (384)
.|..+ .+++|+.|.+.++.... ..+..+..+++|+.|++++|......|..+..+++|+.|++++|. +..+
T Consensus 740 lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 740 FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred ccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 33322 34455555554322110 001111223455555555554433444455555555555555542 2222
Q ss_pred CCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCc
Q 044133 237 SDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNN 312 (384)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 312 (384)
+ ... .+++|+.|++++|......+. ..++++.|++++|.+. .+|..+..+++|+.|++++|+
T Consensus 819 P---------~~~-~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~ 880 (1153)
T PLN03210 819 P---------TGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCN 880 (1153)
T ss_pred C---------CCC-CccccCEEECCCCCccccccc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCC
Confidence 1 111 244555555555432222221 1234555555555544 344445555555555555543
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.88 E-value=9.5e-25 Score=183.94 Aligned_cols=275 Identities=25% Similarity=0.278 Sum_probs=165.3
Q ss_pred CCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccC-CcccccCCcccCCCCCCCEEEC
Q 044133 6 NLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIAS-NQINGSIPLEIENLKVLHVLDL 84 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l 84 (384)
.-.++.+..|+++.+.+.+|..+++||+|+|++|.|+.+.+++|.+++.|.+|.+-+ |+|++...+.|.++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 445677888888877788888888888888888888888888888888877776665 7777777777888888888888
Q ss_pred cCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCccc------------CCccccCCcccc
Q 044133 85 SRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGS------------IPLEIGNLNFLQ 152 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~------------~~~~~~~~~~L~ 152 (384)
.-|++.....++|..++++..|.+.+|.+..+....|..+..++.+.+..|.+... .+..++......
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 77777766667788888888888888887766666777777888777776663210 000111111111
Q ss_pred eeecccccccCCCCccccCcCCCCee--ecc-cccccCCC-CccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeec
Q 044133 153 VLGLSDNKLEGPIPSTIASLVNLKSL--SLH-YNNLIGPI-PSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDL 228 (384)
Q Consensus 153 ~L~l~~~~~~~~~~~~~~~~~~L~~L--~l~-~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 228 (384)
-..+.+..+...-...|.. +++.+ .+. .+...... ..-|..+++|++|++++|.++.+...+|.+...+++|.+
T Consensus 228 p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred hHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 1112222221111111111 11111 111 11111111 123555666666666666666666666666666666666
Q ss_pred CCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCC
Q 044133 229 SNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSIN 290 (384)
Q Consensus 229 ~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 290 (384)
..|++..+.. ..|.++..|+.|+|.+|+|+...|.+|....+|.+|++-.|.+.
T Consensus 306 ~~N~l~~v~~--------~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 306 TRNKLEFVSS--------GMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CcchHHHHHH--------HhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 6666555443 23334556666666666666555666666666666666555554
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=1.4e-24 Score=182.85 Aligned_cols=278 Identities=22% Similarity=0.223 Sum_probs=204.5
Q ss_pred CCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcC-CcccccCCcCCCCCCCCCEEEc
Q 044133 30 KLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSR-NEIGGSIPSTIGHLKRLRILDL 108 (384)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l 108 (384)
.-..|.|..|.|+.+.+.+|+.+++|++|++++|.|..+.|++|.+++.|.+|-+.+ |+|++....+|.++..++.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 566788888888888888888888999999999888888888888888887776655 8888777778888888888888
Q ss_pred CCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccC------------CCCccccCcCCCC
Q 044133 109 SQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEG------------PIPSTIASLVNLK 176 (384)
Q Consensus 109 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------------~~~~~~~~~~~L~ 176 (384)
.-|++.-+....|..+++|..|.+.+|.+..+...+|..+..++.+.+..|.... ..+..++......
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 8888877777788888888888888888876666677788888888777665211 0111112222222
Q ss_pred eeecccccccCCCCccccCCCCCCEE--Ec-cCC-cccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCC
Q 044133 177 SLSLHYNNLIGPIPSTLGHLNRLTDL--DL-SEN-KLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNC 252 (384)
Q Consensus 177 ~L~l~~~~~~~~~~~~~~~~~~L~~L--~l-~~~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 252 (384)
...+....+..+....|. .+++.+ .+ +.+ .........|..+++|+++++++|.++.+.... |...
T Consensus 228 p~rl~~~Ri~q~~a~kf~--c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a--------Fe~~ 297 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFL--CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA--------FEGA 297 (498)
T ss_pred hHHHHHHHhcccchhhhh--hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh--------hcch
Confidence 222333333222222221 112222 11 122 222234457899999999999999998887644 4457
Q ss_pred CCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCcccccc
Q 044133 253 SKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGI 317 (384)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 317 (384)
..+++|.|..|++......+|.++.+|+.|+|.+|+|+...|.+|..+..|.+|++-.|++.+.+
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC 362 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC 362 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCcc
Confidence 89999999999998777788999999999999999999889999999999999999999988743
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=4e-20 Score=175.75 Aligned_cols=268 Identities=25% Similarity=0.281 Sum_probs=201.2
Q ss_pred CCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEEC
Q 044133 5 RNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDL 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 84 (384)
..-..|+++++.++ ..|..+. ++|+.|++.+|.++. .+. ..++|++|++++|+++.. |. ..++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcc-cC---cccccceeec
Confidence 34567899999998 4555554 489999999999884 332 357899999999998844 33 2468999999
Q ss_pred cCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCC
Q 044133 85 SRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGP 164 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 164 (384)
++|.+. ..+.. ...|+.|++++|.++.. +. ..++|+.|++++|.+.... . ...+|+.|++++|.+..
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~L-P~---~p~~L~~LdLS~N~L~~Lp-~---lp~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLP-A---LPSELCKLWAYNNQLTS- 336 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccccc-cc---cccccceeECCCCccccCC-C---CcccccccccccCcccc-
Confidence 999887 33332 36788999999998743 32 2478999999999988543 2 23468889999998874
Q ss_pred CCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCC
Q 044133 165 IPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGP 244 (384)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 244 (384)
++. -..+|+.|++++|.+... +.. ..+|+.|++++|.++.+. . ...+|+.|++++|.+..++..
T Consensus 337 LP~---lp~~Lq~LdLS~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~LP-~---l~~~L~~LdLs~N~Lt~LP~l----- 400 (788)
T PRK15387 337 LPT---LPSGLQELSVSDNQLASL-PTL---PSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTSLPVL----- 400 (788)
T ss_pred ccc---cccccceEecCCCccCCC-CCC---CcccceehhhccccccCc-c---cccccceEEecCCcccCCCCc-----
Confidence 332 124799999999998853 332 467889999999887543 2 235799999999988765421
Q ss_pred CCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccCccccCC
Q 044133 245 IPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFVRKV 324 (384)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l 324 (384)
.++|+.|++++|.+++ .|.. ..+|+.|++++|++. .+|..+..++.|+.|++++|++++..+..+..+
T Consensus 401 -------~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 401 -------PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred -------ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 2579999999999985 3432 357889999999998 688889999999999999999998877665433
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=2.8e-22 Score=185.82 Aligned_cols=281 Identities=29% Similarity=0.344 Sum_probs=149.5
Q ss_pred EeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcc
Q 044133 10 LDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEI 89 (384)
Q Consensus 10 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 89 (384)
|++.+|.++ . -...++.+|+.|....|.+.... ..-++|+.|+.++|.+....+. ....+|++++++.+++
T Consensus 183 ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l 253 (1081)
T KOG0618|consen 183 LDLRYNEME-V--LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNL 253 (1081)
T ss_pred eecccchhh-h--hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceeeccc--cccccceeeecchhhh
Confidence 667777655 1 22455666666666555544211 1224555555555555422111 1234555556655555
Q ss_pred cccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccc
Q 044133 90 GGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTI 169 (384)
Q Consensus 90 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 169 (384)
. ..|..+..+.+|+.++..+|+++ ..+..+....+|+.|.+..|.++ ..+......++|++|++..|.+....+..+
T Consensus 254 ~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l 330 (1081)
T KOG0618|consen 254 S-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFL 330 (1081)
T ss_pred h-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHH
Confidence 5 33455555555666655555553 22333333445555555555544 222333344555555555554432111111
Q ss_pred -------------------------cCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCC
Q 044133 170 -------------------------ASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQ 224 (384)
Q Consensus 170 -------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 224 (384)
...+.|+.|++.+|.+++.....+...++|+.|+|++|.+..+....+.+++.|+
T Consensus 331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Le 410 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELE 410 (1081)
T ss_pred hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhH
Confidence 1223466666666666655555566666777777777766666666666667777
Q ss_pred eeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCc
Q 044133 225 DLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIH 304 (384)
Q Consensus 225 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 304 (384)
+|+++||.+..++ .....++.|++|...+|.+. ..| .+..++.|+.+|++-|++.......-...++|+
T Consensus 411 eL~LSGNkL~~Lp---------~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lk 479 (1081)
T KOG0618|consen 411 ELNLSGNKLTTLP---------DTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLK 479 (1081)
T ss_pred HHhcccchhhhhh---------HHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccc
Confidence 7777777665543 33445666666666666665 333 455666667777776666543222222226677
Q ss_pred EEeCCCCcc
Q 044133 305 TVDLSMNNL 313 (384)
Q Consensus 305 ~L~l~~n~~ 313 (384)
+||++||..
T Consensus 480 yLdlSGN~~ 488 (1081)
T KOG0618|consen 480 YLDLSGNTR 488 (1081)
T ss_pred eeeccCCcc
Confidence 777777663
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=1.2e-21 Score=181.79 Aligned_cols=269 Identities=32% Similarity=0.394 Sum_probs=198.8
Q ss_pred CCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEc
Q 044133 29 SKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDL 108 (384)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 108 (384)
.+|++++++.+.+.. .++.+..|++|+.+...+|.+. ..+..+...++|+.+.+.+|.+. .++....+++.|++|++
T Consensus 241 ~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 467777777776663 3366677777777777777774 44555556677777777777776 45556667788888888
Q ss_pred CCCcccccCCcCCcCCCC-CCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccC
Q 044133 109 SQNKLVGPIPSSVGPLTQ-LTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIG 187 (384)
Q Consensus 109 ~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 187 (384)
..|.+.......+..... |..++.+.+.+.......=...+.|+.|.+.+|.+++.....+.....|+.|++++|.+..
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 888776444433333332 5556666666554332222345678899999999988887888899999999999999987
Q ss_pred CCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccC
Q 044133 188 PIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSG 267 (384)
Q Consensus 188 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 267 (384)
.....+.++..|++|.++||.++. .++....++.|++|...+|++..++ .+..++.|+.+|++.|+++.
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~tL~ahsN~l~~fP----------e~~~l~qL~~lDlS~N~L~~ 466 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHTLRAHSNQLLSFP----------ELAQLPQLKVLDLSCNNLSE 466 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHHHhhcCCceeech----------hhhhcCcceEEecccchhhh
Confidence 777788899999999999999984 4478889999999999999887653 45568999999999999986
Q ss_pred CCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCC
Q 044133 268 SIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMN 311 (384)
Q Consensus 268 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 311 (384)
.....-...++|++||++||......-..|..+..+...++.-+
T Consensus 467 ~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 467 VTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred hhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence 54333333489999999999865566677777777777777776
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=4e-18 Score=162.25 Aligned_cols=245 Identities=27% Similarity=0.295 Sum_probs=187.4
Q ss_pred CCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEEC
Q 044133 5 RNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDL 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 84 (384)
++|+.|++.+|+++.. |. .+++|++|++++|.++.. +. ..++|+.|++++|.+... +.. .+.|+.|++
T Consensus 222 ~~L~~L~L~~N~Lt~L-P~---lp~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~Ls~N~L~~L-p~l---p~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNPLTHL-PAL---PSGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcCCCC-CC---CCCCCcEEEecCCccCcc-cC---cccccceeeccCCchhhh-hhc---hhhcCEEEC
Confidence 4789999999999853 32 368999999999999843 43 246899999999998743 332 267899999
Q ss_pred cCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCC
Q 044133 85 SRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGP 164 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 164 (384)
++|++. ..|. ..++|+.|++++|.+++. +.. ...|+.|++++|.+..++ . ...+|+.|++++|.+..
T Consensus 290 s~N~Lt-~LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~LP-~---lp~~Lq~LdLS~N~Ls~- 356 (788)
T PRK15387 290 FGNQLT-SLPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTSLP-T---LPSGLQELSVSDNQLAS- 356 (788)
T ss_pred cCCccc-cccc---cccccceeECCCCccccC-CCC---cccccccccccCcccccc-c---cccccceEecCCCccCC-
Confidence 999988 3443 247899999999998854 322 246888999999987533 2 22579999999999884
Q ss_pred CCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCC
Q 044133 165 IPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGP 244 (384)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 244 (384)
.|.. .++|+.|++++|.+.. .+.. ..+|+.|++++|.++.... ..++|+.|++++|.+..++.
T Consensus 357 LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~N~LssIP~------ 419 (788)
T PRK15387 357 LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSLPM------ 419 (788)
T ss_pred CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCC----cccCCCEEEccCCcCCCCCc------
Confidence 3332 3578889999998874 3332 3579999999999885432 23689999999999876642
Q ss_pred CCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhc
Q 044133 245 IPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLG 298 (384)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~ 298 (384)
. ..+|+.|++++|+++ ..|..+..+++|+.|++++|++.+..+..+.
T Consensus 420 ---l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 420 ---L---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred ---c---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 1 246889999999998 5677888999999999999999988777663
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.78 E-value=7.6e-21 Score=168.80 Aligned_cols=280 Identities=25% Similarity=0.297 Sum_probs=126.7
Q ss_pred EEeccCCcCcc-CCChhhhcCCCCCeeeccCCccccc----CChhhhCCCCCcEEeccCCcccc------cCCcccCCCC
Q 044133 9 HLDLSNNHLTG-HIPPTLGRLSKLKILNLSSNSLVGN----VPSTLSHLTQLTTLAIASNQING------SIPLEIENLK 77 (384)
Q Consensus 9 ~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~ 77 (384)
.|++.++.+++ .....+..+..|++|+++++.++.. .+..+...+.|++++++++.+.. ..+..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 46677776663 3334456677788888888776532 23334556667777777765541 0112233445
Q ss_pred CCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCccc----CCccccCC-cccc
Q 044133 78 VLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGS----IPLEIGNL-NFLQ 152 (384)
Q Consensus 78 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~ 152 (384)
+|+.|++++|.+....+..+..+.+ . ++|++|++++|.+.+. ....+..+ ++|+
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~ 140 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR--------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc--------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCce
Confidence 5555555555443221111111111 1 2244444444443310 11112233 4455
Q ss_pred eeecccccccCC----CCccccCcCCCCeeecccccccCCC----CccccCCCCCCEEEccCCccccc----CCccCCCC
Q 044133 153 VLGLSDNKLEGP----IPSTIASLVNLKSLSLHYNNLIGPI----PSTLGHLNRLTDLDLSENKLVGP----IPSSVGHL 220 (384)
Q Consensus 153 ~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l 220 (384)
.|++++|.++.. ....+..+++|++|++++|.+.+.. ...+...++|+.|++++|.+++. ....+..+
T Consensus 141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~ 220 (319)
T cd00116 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL 220 (319)
T ss_pred EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence 555555544321 1222334445555555555444211 11223334555555555554321 12233444
Q ss_pred CCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCC----CCchhcCCccccEEecCCCcCCCCC---
Q 044133 221 NFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGS----IPSQIGKLQKLCYLDLSGNSINGKI--- 293 (384)
Q Consensus 221 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~--- 293 (384)
++|+.|++++|.+.+.....+... .....+.|+.|++++|.+++. ....+..+++|+++++++|.+.+..
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~---~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~ 297 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASA---LLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQL 297 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHH---HhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHH
Confidence 556666666555443211111100 000134566666666655421 1223344455666666666665432
Q ss_pred -chhhcCC-CCCcEEeCCCCc
Q 044133 294 -PYQLGAI-PGIHTVDLSMNN 312 (384)
Q Consensus 294 -~~~l~~~-~~L~~L~l~~n~ 312 (384)
...+... +.|+.+++.+|+
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 298 LAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHhhcCCchhhcccCCCC
Confidence 2222222 455566655554
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=8.1e-21 Score=168.63 Aligned_cols=263 Identities=25% Similarity=0.255 Sum_probs=152.1
Q ss_pred CCCCCCEEeccCCcCccC----CChhhhcCCCCCeeeccCCcccc------cCChhhhCCCCCcEEeccCCcccccCCcc
Q 044133 3 RLRNLVHLDLSNNHLTGH----IPPTLGRLSKLKILNLSSNSLVG------NVPSTLSHLTQLTTLAIASNQINGSIPLE 72 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 72 (384)
.+++|++++++++.+++. .+..+...+.+++++++++.+.. ..+.++..+++|++|++++|.+....+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 356799999999988643 23345567889999999887662 23356778899999999999886444444
Q ss_pred cCCC---CCCCEEECcCCcccc----cCCcCCCCC-CCCCEEEcCCCccccc----CCcCCcCCCCCCEEEccCCcCccc
Q 044133 73 IENL---KVLHVLDLSRNEIGG----SIPSTIGHL-KRLRILDLSQNKLVGP----IPSSVGPLTQLTTLNMHSNRINGS 140 (384)
Q Consensus 73 ~~~~---~~L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~ 140 (384)
+..+ ++|++|++++|.+.. .....+..+ ++|++|++++|.++.. ....+..+++|+.|++++|.+.+.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 180 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDA 180 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchH
Confidence 4333 459999999887762 122234455 7778888887776521 222344555666666666665421
Q ss_pred C----CccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCcc
Q 044133 141 I----PLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSS 216 (384)
Q Consensus 141 ~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 216 (384)
. ...+...++|++|++++|.+.+.... .....+..+++|+.|++++|.+++.....
T Consensus 181 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~--------------------~l~~~~~~~~~L~~L~ls~n~l~~~~~~~ 240 (319)
T cd00116 181 GIRALAEGLKANCNLEVLDLNNNGLTDEGAS--------------------ALAETLASLKSLEVLNLGDNNLTDAGAAA 240 (319)
T ss_pred HHHHHHHHHHhCCCCCEEeccCCccChHHHH--------------------HHHHHhcccCCCCEEecCCCcCchHHHHH
Confidence 1 11223334555555555544321110 01122344555666666655544211111
Q ss_pred C-----CCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCC----CchhcCC-ccccEEecCC
Q 044133 217 V-----GHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSI----PSQIGKL-QKLCYLDLSG 286 (384)
Q Consensus 217 ~-----~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~-~~L~~L~l~~ 286 (384)
+ ...+.|+.|++++|.+++.+...+. ..+..+++|+++++++|.+++.. ...+... +.++++++.+
T Consensus 241 l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~----~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 241 LASALLSPNISLLTLSLSCNDITDDGAKDLA----EVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHhccCCCceEEEccCCCCCcHHHHHHH----HHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 1 1235677777777766543222222 23444577888888888777542 2233334 5777777776
Q ss_pred CcC
Q 044133 287 NSI 289 (384)
Q Consensus 287 n~~ 289 (384)
|.+
T Consensus 317 ~~~ 319 (319)
T cd00116 317 DSF 319 (319)
T ss_pred CCC
Confidence 653
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=6.7e-17 Score=154.74 Aligned_cols=247 Identities=26% Similarity=0.415 Sum_probs=147.6
Q ss_pred CCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcC
Q 044133 30 KLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLS 109 (384)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (384)
+...|+++++.++. .|..+. +.|+.|++++|.+... |..+. ++|+.|++++|.+. .+|..+. ++|+.|+++
T Consensus 179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~LtsL-P~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELKSL-PENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCcC-Chhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 45566666655552 333222 3566677776666533 33222 46677777766665 3343332 457777777
Q ss_pred CCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCC
Q 044133 110 QNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPI 189 (384)
Q Consensus 110 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 189 (384)
+|.+..+ +..+. .+|+.|++++|.+... +..+. ++|+.|++++|.+.. .+..+. ++|+.|++++|.+...
T Consensus 250 ~N~L~~L-P~~l~--s~L~~L~Ls~N~L~~L-P~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~L- 319 (754)
T PRK15370 250 INRITEL-PERLP--SALQSLDLFHNKISCL-PENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTAL- 319 (754)
T ss_pred CCccCcC-ChhHh--CCCCEEECcCCccCcc-ccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccC-
Confidence 7766532 33332 3667777777766632 33222 467777777776653 232222 3677777777776632
Q ss_pred CccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCC
Q 044133 190 PSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSI 269 (384)
Q Consensus 190 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 269 (384)
+..+ .++|+.|++++|.++.+ +..+ .++|+.|++++|.+..++. .+ .+.|+.|++++|+++. .
T Consensus 320 P~~l--~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~~L~Ls~N~L~~LP~---------~l--p~~L~~LdLs~N~Lt~-L 382 (754)
T PRK15370 320 PETL--PPGLKTLEAGENALTSL-PASL--PPELQVLDVSKNQITVLPE---------TL--PPTITTLDVSRNALTN-L 382 (754)
T ss_pred Cccc--cccceeccccCCccccC-Chhh--cCcccEEECCCCCCCcCCh---------hh--cCCcCEEECCCCcCCC-C
Confidence 2222 35778888888877643 2222 2578888888887765432 11 2578888888888874 3
Q ss_pred CchhcCCccccEEecCCCcCCCCCchh----hcCCCCCcEEeCCCCcccc
Q 044133 270 PSQIGKLQKLCYLDLSGNSINGKIPYQ----LGAIPGIHTVDLSMNNLSG 315 (384)
Q Consensus 270 ~~~~~~~~~L~~L~l~~n~~~~~~~~~----l~~~~~L~~L~l~~n~~~~ 315 (384)
|..+. .+|+.|++++|++. .+|.. +..++.+..+++.+|+++.
T Consensus 383 P~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 383 PENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred CHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 44443 36888888888887 44443 3445778888888888874
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.70 E-value=1.2e-16 Score=153.03 Aligned_cols=248 Identities=27% Similarity=0.393 Sum_probs=184.1
Q ss_pred CCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEEC
Q 044133 5 RNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDL 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 84 (384)
.+..+|+++++.++. .|..+. ++|+.|++++|.++. .+..+. ++|+.|++++|.+.. +|..+. ++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEEC
Confidence 467889999998884 444443 589999999999984 444333 589999999999874 344443 57999999
Q ss_pred cCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCC
Q 044133 85 SRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGP 164 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 164 (384)
++|.+. .+|..+. .+|+.|++++|.+.. .+..+. ++|+.|++++|.++... ..+ .++|+.|++++|.+..
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~LP-~~l--p~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRTLP-AHL--PSGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECCCCccccCc-ccc--hhhHHHHHhcCCcccc-
Confidence 999988 5555443 589999999999884 444443 58999999999988543 322 2578999999998874
Q ss_pred CCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCC
Q 044133 165 IPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGP 244 (384)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 244 (384)
.+..+ .++|+.|++++|.++. .+..+ +++|+.|++++|.++.+ +..+ .++|+.|++++|.+..++.
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt~LP~------ 384 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALTNLPE------ 384 (754)
T ss_pred CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCCCCCH------
Confidence 34333 3689999999998875 44444 37999999999998743 3333 3689999999999876543
Q ss_pred CCccccCCCCCcEEEccCCcccCCCCchh----cCCccccEEecCCCcCCC
Q 044133 245 IPPELMNCSKLTTLILGNNLLSGSIPSQI----GKLQKLCYLDLSGNSING 291 (384)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~n~~~~ 291 (384)
.+. +.|+.|++++|++++ .|..+ ...+.+..+++.+|++..
T Consensus 385 ---~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 385 ---NLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred ---hHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCccH
Confidence 121 368899999999984 44433 345788999999999873
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.7e-17 Score=124.84 Aligned_cols=157 Identities=32% Similarity=0.530 Sum_probs=123.0
Q ss_pred hcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCE
Q 044133 26 GRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRI 105 (384)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 105 (384)
-++.++..|.+++|.++ ..+..+..+.+|+.|++.+|++. ..|..++.+++|+.|+++-|.+. ..|.+|+.+|.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 34566777788888877 55556777888888888888876 56677778888888888877776 67788888888888
Q ss_pred EEcCCCcccc-cCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeeccccc
Q 044133 106 LDLSQNKLVG-PIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNN 184 (384)
Q Consensus 106 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 184 (384)
|++..|++.. ..+..|..++.|+.|.+++|.++ +.|+.++++.+|+.|.+.+|++. ..|..++.++.|++|++++|.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 8888877653 46666777788888888888887 66777888888999988888876 567778888889999999888
Q ss_pred ccC
Q 044133 185 LIG 187 (384)
Q Consensus 185 ~~~ 187 (384)
++.
T Consensus 185 l~v 187 (264)
T KOG0617|consen 185 LTV 187 (264)
T ss_pred eee
Confidence 774
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=4.4e-17 Score=122.68 Aligned_cols=158 Identities=34% Similarity=0.602 Sum_probs=130.5
Q ss_pred hCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCE
Q 044133 50 SHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTT 129 (384)
Q Consensus 50 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 129 (384)
.++.++++|.+++|.++ ..|..++.+.+|+.|++++|++. ..|..+..+++|+.|+++-|++. ..+..|+.+|.|+.
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 35677888899999887 44556678899999999999988 67788888999999999988876 77888999999999
Q ss_pred EEccCCcCc-ccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCc
Q 044133 130 LNMHSNRIN-GSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENK 208 (384)
Q Consensus 130 L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 208 (384)
|+++.|.+. ...|..|..+..|+-|.+++|++. ..|...+.+++|+.|.+.+|.+. ..+..+..+..|++|++.+|.
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccce
Confidence 999888775 456777888888889999999887 67778888999999999888876 466777888899999999998
Q ss_pred cccc
Q 044133 209 LVGP 212 (384)
Q Consensus 209 ~~~~ 212 (384)
++-.
T Consensus 185 l~vl 188 (264)
T KOG0617|consen 185 LTVL 188 (264)
T ss_pred eeec
Confidence 8733
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.47 E-value=1.5e-13 Score=131.21 Aligned_cols=110 Identities=33% Similarity=0.530 Sum_probs=93.8
Q ss_pred CCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCC
Q 044133 223 LQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPG 302 (384)
Q Consensus 223 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 302 (384)
++.|++++|.+ .+.+|..+..+++|+.|+|++|.+.+..+..+..+++|+.|++++|++.+.+|..+..+++
T Consensus 420 v~~L~L~~n~L--------~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~ 491 (623)
T PLN03150 420 IDGLGLDNQGL--------RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491 (623)
T ss_pred EEEEECCCCCc--------cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCC
Confidence 55677777644 4556678888999999999999999888989999999999999999999999999999999
Q ss_pred CcEEeCCCCccccccCcccc----CCCeEEcccCcCCCCCCC
Q 044133 303 IHTVDLSMNNLSGGIPVFVR----KVPHLDVSGNKFGGEIPT 340 (384)
Q Consensus 303 L~~L~l~~n~~~~~~~~~~~----~l~~l~l~~~~~~~~~p~ 340 (384)
|+.|++++|.+++.+|..+. ++..+++.+|...|..|.
T Consensus 492 L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 492 LRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 99999999999999987654 446788899887776654
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.39 E-value=1.9e-14 Score=120.56 Aligned_cols=242 Identities=23% Similarity=0.250 Sum_probs=121.4
Q ss_pred hhhCCCCCcEEeccCCccccc----CCcccCCCCCCCEEECcCCccc---ccCC-------cCCCCCCCCCEEEcCCCcc
Q 044133 48 TLSHLTQLTTLAIASNQINGS----IPLEIENLKVLHVLDLSRNEIG---GSIP-------STIGHLKRLRILDLSQNKL 113 (384)
Q Consensus 48 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~---~~~~-------~~~~~l~~L~~L~l~~~~~ 113 (384)
....+..++.+++++|.+... ....+.+.+.|+..+++.-.-. ...| .++..+++|++|+||+|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 345667888999999887532 2233566678888888764221 1122 3455667888888888876
Q ss_pred cccCCc----CCcCCCCCCEEEccCCcCcccCCcc-------------ccCCcccceeecccccccCCC----CccccCc
Q 044133 114 VGPIPS----SVGPLTQLTTLNMHSNRINGSIPLE-------------IGNLNFLQVLGLSDNKLEGPI----PSTIASL 172 (384)
Q Consensus 114 ~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~----~~~~~~~ 172 (384)
...... .+..+..|++|.|.+|.+....... ....++|+.+..+.|.+.+.. ...|...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 433222 2345677888888877765322111 122344555555555443322 1223333
Q ss_pred CCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCC
Q 044133 173 VNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNC 252 (384)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 252 (384)
+.|+.+++..|.+..... ......+..+++|+.|++.+|.++......+. ..+..+
T Consensus 185 ~~leevr~~qN~I~~eG~--------------------~al~eal~~~~~LevLdl~DNtft~egs~~La----kaL~s~ 240 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGV--------------------TALAEALEHCPHLEVLDLRDNTFTLEGSVALA----KALSSW 240 (382)
T ss_pred cccceEEEecccccCchh--------------------HHHHHHHHhCCcceeeecccchhhhHHHHHHH----HHhccc
Confidence 445555555444432111 01122334444445555544444333222222 233344
Q ss_pred CCCcEEEccCCcccCCCCchh-----cCCccccEEecCCCcCCCC----CchhhcCCCCCcEEeCCCCcc
Q 044133 253 SKLTTLILGNNLLSGSIPSQI-----GKLQKLCYLDLSGNSINGK----IPYQLGAIPGIHTVDLSMNNL 313 (384)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~ 313 (384)
++|+.|++++|.+.+....+| ...++|+.+.+.+|.|+.. +...+...|.|+.|++++|.+
T Consensus 241 ~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 241 PHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred chheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 555555555555544333332 2345555555555555432 122233455566666666665
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.37 E-value=1.6e-14 Score=120.89 Aligned_cols=245 Identities=19% Similarity=0.220 Sum_probs=160.2
Q ss_pred hhhhcCCCCCeeeccCCccccc----CChhhhCCCCCcEEeccCC---cccccCC-------cccCCCCCCCEEECcCCc
Q 044133 23 PTLGRLSKLKILNLSSNSLVGN----VPSTLSHLTQLTTLAIASN---QINGSIP-------LEIENLKVLHVLDLSRNE 88 (384)
Q Consensus 23 ~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~---~~~~~~~-------~~~~~~~~L~~L~l~~~~ 88 (384)
.....+..+..|++++|.+... +...+.+-+.|+..++++- +..+..| .++..+++|++++|+.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 3456788999999999988743 3344566788999998863 1112222 335678999999999998
Q ss_pred ccccCCcC----CCCCCCCCEEEcCCCcccccCC-------------cCCcCCCCCCEEEccCCcCcccCC----ccccC
Q 044133 89 IGGSIPST----IGHLKRLRILDLSQNKLVGPIP-------------SSVGPLTQLTTLNMHSNRINGSIP----LEIGN 147 (384)
Q Consensus 89 ~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~-------------~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~ 147 (384)
+....+.. +..+..|++|.+.+|.+..... .....-+.|+.+..++|.+.+... ..|..
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~ 183 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQS 183 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHh
Confidence 87555443 4567999999999998753221 223445789999999999875433 35667
Q ss_pred CcccceeecccccccCCC----CccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCC
Q 044133 148 LNFLQVLGLSDNKLEGPI----PSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFL 223 (384)
Q Consensus 148 ~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L 223 (384)
.+.|+.+.+..|.+.... ...+..+++|+.|++++|.++..... .....+..+++|
T Consensus 184 ~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~--------------------~LakaL~s~~~L 243 (382)
T KOG1909|consen 184 HPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV--------------------ALAKALSSWPHL 243 (382)
T ss_pred ccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH--------------------HHHHHhcccchh
Confidence 789999999999876432 23455666666666666665533211 122344455566
Q ss_pred CeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCC----CchhcCCccccEEecCCCcCC
Q 044133 224 QDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSI----PSQIGKLQKLCYLDLSGNSIN 290 (384)
Q Consensus 224 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~~~ 290 (384)
+++++++|.+.+-+..++.... -...|.|+.+.+.+|.++... .......+.|+.|++++|.+.
T Consensus 244 ~El~l~dcll~~~Ga~a~~~al---~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 244 RELNLGDCLLENEGAIAFVDAL---KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred eeecccccccccccHHHHHHHH---hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 6666666666554443333211 122577888888888776432 222344678888888888874
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=5.3e-13 Score=115.08 Aligned_cols=216 Identities=25% Similarity=0.246 Sum_probs=113.6
Q ss_pred CCCCCCEEECcCCcccccCC-cCCCCCCCCCEEEcCCCccccc--CCcCCcCCCCCCEEEccCCcCcccCC-ccccCCcc
Q 044133 75 NLKVLHVLDLSRNEIGGSIP-STIGHLKRLRILDLSQNKLVGP--IPSSVGPLTQLTTLNMHSNRINGSIP-LEIGNLNF 150 (384)
Q Consensus 75 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~ 150 (384)
++.+|+++.+.++.+..... .....|++++.|+++.|-+... .......+|+|+.|+++.|.+..... ..-..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45667777776666552221 2345567777777777655432 22344566777777777776542211 11124456
Q ss_pred cceeecccccccCCC-CccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccC-CccCCCCCCCCeeec
Q 044133 151 LQVLGLSDNKLEGPI-PSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPI-PSSVGHLNFLQDLDL 228 (384)
Q Consensus 151 L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l 228 (384)
|+.|.++.|.++..- ......+|+|+.|+++.|............+..|++|+|++|.+-+.. ....+.++.|+.|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 667777776665321 122345667777777666422122223334556677777766654332 233455666667777
Q ss_pred CCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCC-CCchhcCCccccEEecCCCcCCCC
Q 044133 229 SNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGS-IPSQIGKLQKLCYLDLSGNSINGK 292 (384)
Q Consensus 229 ~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~ 292 (384)
+.+.+.++...... ...-...++.|++|++..|++.+. ....+...++|+.|.+..|.++.+
T Consensus 279 s~tgi~si~~~d~~--s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 279 SSTGIASIAEPDVE--SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred cccCcchhcCCCcc--chhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 76666655321110 011123356666777766666421 112334455666666666666543
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=6.5e-13 Score=114.57 Aligned_cols=209 Identities=23% Similarity=0.201 Sum_probs=112.1
Q ss_pred cCCCCCeeeccCCcccccCC-hhhhCCCCCcEEeccCCcccccC--CcccCCCCCCCEEECcCCcccccCCc-CCCCCCC
Q 044133 27 RLSKLKILNLSSNSLVGNVP-STLSHLTQLTTLAIASNQINGSI--PLEIENLKVLHVLDLSRNEIGGSIPS-TIGHLKR 102 (384)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~ 102 (384)
++.+|+++.|.++.+..... .....|++++.|+++.|-+.... ......+|+|+.|+++.|.+...... .-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45666666666665552221 24455666666666666543211 11223566667777766655421111 1123566
Q ss_pred CCEEEcCCCcccc-cCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCC-CCccccCcCCCCeeec
Q 044133 103 LRILDLSQNKLVG-PIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGP-IPSTIASLVNLKSLSL 180 (384)
Q Consensus 103 L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l 180 (384)
|+.|.++.|.++. .....+..+|+|+.|++..|............++.|+.|++++|++.+. .....+.++.|+.|.+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 7777777776642 1222344566777777766642222223334456677777777665422 1234556677777777
Q ss_pred ccccccCCCCcc------ccCCCCCCEEEccCCccccc-CCccCCCCCCCCeeecCCCCCCC
Q 044133 181 HYNNLIGPIPST------LGHLNRLTDLDLSENKLVGP-IPSSVGHLNFLQDLDLSNNKLED 235 (384)
Q Consensus 181 ~~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~ 235 (384)
+.+.+....... ...+++|+.|.+..|++.+. ....+..+++|+.|.+..|.+..
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 766665432211 24467777777777776432 22344455666777666666544
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.25 E-value=1.1e-11 Score=97.45 Aligned_cols=108 Identities=31% Similarity=0.346 Sum_probs=29.1
Q ss_pred CCCCCEEEccCCcccccCCccCC-CCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhc
Q 044133 196 LNRLTDLDLSENKLVGPIPSSVG-HLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIG 274 (384)
Q Consensus 196 ~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 274 (384)
+.++++|++.+|.++.+. .++ .+.+|+.|++++|.+..+. .+..++.|++|++++|.+++.......
T Consensus 18 ~~~~~~L~L~~n~I~~Ie--~L~~~l~~L~~L~Ls~N~I~~l~----------~l~~L~~L~~L~L~~N~I~~i~~~l~~ 85 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIE--NLGATLDKLEVLDLSNNQITKLE----------GLPGLPRLKTLDLSNNRISSISEGLDK 85 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T----------T----TT--EEE--SS---S-CHHHHH
T ss_pred cccccccccccccccccc--chhhhhcCCCEEECCCCCCcccc----------CccChhhhhhcccCCCCCCccccchHH
Confidence 344555556555554332 232 3455666666666655542 233355666666666666543221113
Q ss_pred CCccccEEecCCCcCCCC-CchhhcCCCCCcEEeCCCCcccc
Q 044133 275 KLQKLCYLDLSGNSINGK-IPYQLGAIPGIHTVDLSMNNLSG 315 (384)
Q Consensus 275 ~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~ 315 (384)
.+++|++|++++|+|.+. ....+..+++|+.|++.+||++.
T Consensus 86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 456666666666666542 12445556666666666666654
No 29
>PLN03150 hypothetical protein; Provisional
Probab=99.19 E-value=9e-11 Score=112.34 Aligned_cols=113 Identities=36% Similarity=0.593 Sum_probs=98.1
Q ss_pred CCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCc
Q 044133 198 RLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQ 277 (384)
Q Consensus 198 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 277 (384)
.++.|++++|.+....+..+..+++|+.|++++|.+. +.+|..+..+++|+.|++++|++++..|..+..++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~--------g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~ 490 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR--------GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc--------CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCC
Confidence 3788999999998888888999999999999999654 44566788899999999999999999999999999
Q ss_pred cccEEecCCCcCCCCCchhhcCC-CCCcEEeCCCCccccccC
Q 044133 278 KLCYLDLSGNSINGKIPYQLGAI-PGIHTVDLSMNNLSGGIP 318 (384)
Q Consensus 278 ~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~ 318 (384)
+|+.|++++|++.+.+|..+... .++..+++.+|+..|..|
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence 99999999999999999988763 467789999998766443
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.16 E-value=2.1e-11 Score=95.81 Aligned_cols=57 Identities=28% Similarity=0.369 Sum_probs=19.2
Q ss_pred CCCCcEEEccCCcccCC-CCchhcCCccccEEecCCCcCCCCC---chhhcCCCCCcEEeC
Q 044133 252 CSKLTTLILGNNLLSGS-IPSQIGKLQKLCYLDLSGNSINGKI---PYQLGAIPGIHTVDL 308 (384)
Q Consensus 252 ~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~---~~~l~~~~~L~~L~l 308 (384)
+|+|++|++++|++.+. ....+..+++|+.|++.+|++.... ...+..+|+|+.||-
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 44455555555544431 1233444555555555555554321 123445566665543
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.15 E-value=7e-12 Score=103.36 Aligned_cols=128 Identities=31% Similarity=0.366 Sum_probs=58.5
Q ss_pred CCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCC
Q 044133 174 NLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCS 253 (384)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 253 (384)
.|+++++++|.++. ......-.|+++.|++++|.+..+. .++.+++|+.|++++|.+..+.+.. ..+-
T Consensus 285 ~LtelDLS~N~I~~-iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~~~Gwh---------~KLG 352 (490)
T KOG1259|consen 285 ELTELDLSGNLITQ-IDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAECVGWH---------LKLG 352 (490)
T ss_pred hhhhccccccchhh-hhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhHhhhhhH---------hhhc
Confidence 34455555554442 2233344455555555555544322 2444555555555555444432211 1133
Q ss_pred CCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCC-chhhcCCCCCcEEeCCCCcccc
Q 044133 254 KLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKI-PYQLGAIPGIHTVDLSMNNLSG 315 (384)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~ 315 (384)
+.++|.+++|.+.+ ...+..+-+|..||+++|+|.... ...++.+|-|+.+.+.+|++.+
T Consensus 353 NIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 353 NIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred CEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 44555555554431 123334445555555555554321 2345555555555555555543
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.10 E-value=7.5e-11 Score=115.46 Aligned_cols=127 Identities=28% Similarity=0.368 Sum_probs=71.6
Q ss_pred CCCEEeccCCcCccCCChhhhcCCCCCeeeccCCc--ccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEE
Q 044133 6 NLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNS--LVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLD 83 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 83 (384)
..+.+.+.++.+... +. -.++++|++|-+..|. +.....+.|..+|.|+.||+++|.-...+|..++++-+|++|+
T Consensus 524 ~~rr~s~~~~~~~~~-~~-~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEHI-AG-SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchhhc-cC-CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 344555555544321 11 1234466666666654 3333344466666666666666655555666666666666666
Q ss_pred CcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCC
Q 044133 84 LSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSN 135 (384)
Q Consensus 84 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 135 (384)
+++..+. ..|..+.++..|.+|++..+......+.....+++|+.|.+...
T Consensus 602 L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred ccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 6666665 55666666666666666665543333444445666666666543
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=2.8e-11 Score=99.82 Aligned_cols=127 Identities=28% Similarity=0.282 Sum_probs=74.1
Q ss_pred CCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCC
Q 044133 197 NRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKL 276 (384)
Q Consensus 197 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 276 (384)
..|+++++++|.++.+ .....-.|.++.|++++|.+..++. +..+++|+.|++++|.++. ...+-..+
T Consensus 284 q~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v~n----------La~L~~L~~LDLS~N~Ls~-~~Gwh~KL 351 (490)
T KOG1259|consen 284 QELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTVQN----------LAELPQLQLLDLSGNLLAE-CVGWHLKL 351 (490)
T ss_pred hhhhhccccccchhhh-hhhhhhccceeEEeccccceeeehh----------hhhcccceEeecccchhHh-hhhhHhhh
Confidence 4566777777766522 3345556677777777776655432 3345677777777776663 22333445
Q ss_pred ccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCcccccc----CccccCCCeEEcccCcCCCC
Q 044133 277 QKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGI----PVFVRKVPHLDVSGNKFGGE 337 (384)
Q Consensus 277 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~----~~~~~~l~~l~l~~~~~~~~ 337 (384)
.++++|.+.+|.+.+ ..++..+-+|..||+++|++..-. ...++-|+.+.+.+|++.+.
T Consensus 352 GNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 566777777776642 345556666777777777665421 12233455666666666543
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=3.8e-10 Score=103.15 Aligned_cols=196 Identities=38% Similarity=0.494 Sum_probs=141.0
Q ss_pred eeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCC-CCCEEECcCCcccccCCcCCCCCCCCCEEEcCCC
Q 044133 33 ILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLK-VLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQN 111 (384)
Q Consensus 33 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (384)
.+.+..+.+. .........+.++.+++.++.+..+. ....... +|+.|++++|++. ..+..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i~-~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDIP-PLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccccCc-cccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4666666653 22233455577889999998887543 3334443 8999999998887 44456778899999999999
Q ss_pred cccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCc
Q 044133 112 KLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPS 191 (384)
Q Consensus 112 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 191 (384)
++... +......+.|+.|++++|.+.... ........|+++.+++|.+. ..+..+....++..+.+..+++.. .+.
T Consensus 174 ~l~~l-~~~~~~~~~L~~L~ls~N~i~~l~-~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 174 DLSDL-PKLLSNLSNLNNLDLSGNKISDLP-PEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred hhhhh-hhhhhhhhhhhheeccCCccccCc-hhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccc
Confidence 88744 333336788899999999988543 33344555888999988543 344567777888888888777653 245
Q ss_pred cccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCC
Q 044133 192 TLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLS 237 (384)
Q Consensus 192 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 237 (384)
.+..++.++.|++++|.++.+.. +..+.+++.|+++++.+....
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred hhccccccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 67778889999999999886654 788889999999998876553
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.02 E-value=7.6e-10 Score=101.17 Aligned_cols=200 Identities=38% Similarity=0.528 Sum_probs=151.5
Q ss_pred EEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCC-CCCEEEcCCCcccccCCcCCcCCCCCCEEEccCC
Q 044133 57 TLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLK-RLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSN 135 (384)
Q Consensus 57 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 135 (384)
.++...+.+... ...+...+.++.+++.++.+. .++....... +|++|++++|.+... +..+..++.|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l-~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESL-PSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhh-hhhhhccccccccccCCc
Confidence 577777776322 233445588999999999988 4455555564 999999999998743 356788999999999999
Q ss_pred cCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCc
Q 044133 136 RINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPS 215 (384)
Q Consensus 136 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 215 (384)
++.+.. ......+.|+.|++++|.+.. .+........|+++.+++|... .....+..+.++..+.+.+|++... +.
T Consensus 174 ~l~~l~-~~~~~~~~L~~L~ls~N~i~~-l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~-~~ 249 (394)
T COG4886 174 DLSDLP-KLLSNLSNLNNLDLSGNKISD-LPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDL-PE 249 (394)
T ss_pred hhhhhh-hhhhhhhhhhheeccCCcccc-CchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeec-cc
Confidence 998543 333478899999999999884 4444445566999999998543 2445677888888888888887632 45
Q ss_pred cCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchh
Q 044133 216 SVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQI 273 (384)
Q Consensus 216 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 273 (384)
.+..+++++.|++++|.+++++. +....+++.++++++.++...+...
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i~~----------~~~~~~l~~L~~s~n~~~~~~~~~~ 297 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSISS----------LGSLTNLRELDLSGNSLSNALPLIA 297 (394)
T ss_pred hhccccccceecccccccccccc----------ccccCccCEEeccCccccccchhhh
Confidence 77888899999999999988743 4557899999999998876554443
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.00 E-value=3.2e-10 Score=73.33 Aligned_cols=61 Identities=39% Similarity=0.569 Sum_probs=40.7
Q ss_pred CCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcc
Q 044133 5 RNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQI 65 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 65 (384)
|+|++|++++|+++...+..|.++++|++|++++|.++...+++|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4566677777766666666666677777777776666666666666666677776666653
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.95 E-value=9.4e-11 Score=107.33 Aligned_cols=246 Identities=29% Similarity=0.335 Sum_probs=144.9
Q ss_pred CCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEE
Q 044133 51 HLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTL 130 (384)
Q Consensus 51 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 130 (384)
.+..++.+.+..|.+.. ....+..+++|+.+++.+|.+... ...+..+++|++|++++|.++.+ ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 34555566666666653 223356667777777777777632 22256677777888877777644 244555667777
Q ss_pred EccCCcCcccCCccccCCcccceeecccccccCCCC-ccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcc
Q 044133 131 NMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIP-STIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKL 209 (384)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 209 (384)
++.+|.+..+. .+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+... ..+.....+..+++..|.+
T Consensus 146 ~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhcc--CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 77777776442 34446777777787777664433 1 45667777777777776543 2334444455556666665
Q ss_pred cccCCccCCCCC--CCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCC
Q 044133 210 VGPIPSSVGHLN--FLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGN 287 (384)
Q Consensus 210 ~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 287 (384)
+.... +..+. .|+.+++++|.+...+ ..+..++.+..+++.++.+... ..+...+.+..+....+
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~~~---------~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~ 287 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRISRSP---------EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDN 287 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCcccccc---------ccccccccccccchhhcccccc--ccccccchHHHhccCcc
Confidence 53322 11222 3777778877766542 2234466777777777776533 22334455556666666
Q ss_pred cCCCC---Cchh-hcCCCCCcEEeCCCCccccccC
Q 044133 288 SINGK---IPYQ-LGAIPGIHTVDLSMNNLSGGIP 318 (384)
Q Consensus 288 ~~~~~---~~~~-l~~~~~L~~L~l~~n~~~~~~~ 318 (384)
.+... .... ....+.+..+.+.+|+.....+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 288 KLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred hhcchhhhhccccccccccccccccccCccccccc
Confidence 55422 1111 3456677777888887665443
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.95 E-value=1.1e-10 Score=107.00 Aligned_cols=247 Identities=30% Similarity=0.306 Sum_probs=155.7
Q ss_pred hcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCE
Q 044133 26 GRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRI 105 (384)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 105 (384)
..+..++.+.+..|.+.. ....+..+.+|+.+++.+|.+..+. ..+..+++|++|++++|.|+.. ..+..++.|+.
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~ 144 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKE 144 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheeccccccccc--cchhhccchhh
Confidence 355666666676666653 2334667788888888888886442 2266788888888888888744 34566677888
Q ss_pred EEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCC-ccccCCcccceeecccccccCCCCccccCcCCCCeeeccccc
Q 044133 106 LDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIP-LEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNN 184 (384)
Q Consensus 106 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 184 (384)
|++.+|.+... ..+..++.|+.+++++|.+..... . ...+.+++.+.+++|.+... ..+.....+..+.+..|.
T Consensus 145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~ 219 (414)
T KOG0531|consen 145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNK 219 (414)
T ss_pred heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccc
Confidence 88888888644 345557788888888888875543 2 46777788888888876533 333344444555666666
Q ss_pred ccCCCCccccCCCC--CCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccC
Q 044133 185 LIGPIPSTLGHLNR--LTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGN 262 (384)
Q Consensus 185 ~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 262 (384)
+.... .+..... |+.+++++|++.... ..+..+..+..+++.++.+..... +...+.+..+....
T Consensus 220 i~~~~--~l~~~~~~~L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~~~----------~~~~~~~~~~~~~~ 286 (414)
T KOG0531|consen 220 ISKLE--GLNELVMLHLRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNLEG----------LERLPKLSELWLND 286 (414)
T ss_pred ceecc--CcccchhHHHHHHhcccCcccccc-ccccccccccccchhhcccccccc----------ccccchHHHhccCc
Confidence 65432 2222333 788888888776332 455667778888888887765432 22234455555555
Q ss_pred CcccCC---CC-chhcCCccccEEecCCCcCCCCCc
Q 044133 263 NLLSGS---IP-SQIGKLQKLCYLDLSGNSINGKIP 294 (384)
Q Consensus 263 ~~~~~~---~~-~~~~~~~~L~~L~l~~n~~~~~~~ 294 (384)
+.+... .. ......+.+..+.+..|.+....+
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 287 NKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred chhcchhhhhccccccccccccccccccCccccccc
Confidence 554421 11 113445677777777777665443
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=4.5e-10 Score=110.11 Aligned_cols=203 Identities=28% Similarity=0.363 Sum_probs=129.8
Q ss_pred cCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCc--ccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCC
Q 044133 27 RLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQ--INGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLR 104 (384)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 104 (384)
.....+.+.+.++.+... +.+ ..+++|+.|-+..|. +.......|..++.|++||+++|.-....|..++.+-+||
T Consensus 521 ~~~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 345678888877766522 222 345689999999886 4545555588899999999998876668899999999999
Q ss_pred EEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeeccccccc--CCCCccccCcCCCCeeeccc
Q 044133 105 ILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLE--GPIPSTIASLVNLKSLSLHY 182 (384)
Q Consensus 105 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~ 182 (384)
+|+++++.+. ..|..+.++..|.+|++..+......+.....+++|++|.+...... ......+..+.+|+.+....
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 9999999987 77888999999999999887765555666667899999988765421 11122233444444444432
Q ss_pred ccccCCCCccccCCCCCC----EEEccCCcccccCCccCCCCCCCCeeecCCCCCCC
Q 044133 183 NNLIGPIPSTLGHLNRLT----DLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLED 235 (384)
Q Consensus 183 ~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 235 (384)
... .....+...++|. .+.+.++.. ......+..+.+|+.|.+.++.+.+
T Consensus 678 ~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 678 SSV--LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred chh--HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCch
Confidence 221 0001112222222 222222111 1233445566777777777776654
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.94 E-value=5.1e-10 Score=72.39 Aligned_cols=61 Identities=36% Similarity=0.500 Sum_probs=45.2
Q ss_pred CCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCcc
Q 044133 253 SKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNL 313 (384)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 313 (384)
|+|++|++++|+++...+..|..+++|++|++++|.+....+.+|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4667777777777766667777777777777777777766667777777777777777764
No 41
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.90 E-value=1.3e-10 Score=103.79 Aligned_cols=169 Identities=35% Similarity=0.548 Sum_probs=77.7
Q ss_pred EEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeeccccc
Q 044133 105 ILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNN 184 (384)
Q Consensus 105 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 184 (384)
..+++.|++. .++..+..+..|+.+.+..|.+. ..+..+.++..|+.++++.|+++ ..+..+..++ |+.|.+++|+
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 3444444444 33333444444455555555444 33344455555555555555544 2233332222 4555555555
Q ss_pred ccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCc
Q 044133 185 LIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNL 264 (384)
Q Consensus 185 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 264 (384)
++ ..+..+...++|..|+.+.|.+. ..+..+..+.+|+.|++..|.+.+++. .+.. -.|..||++.|+
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~---------El~~-LpLi~lDfScNk 222 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPE---------ELCS-LPLIRLDFSCNK 222 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCH---------HHhC-CceeeeecccCc
Confidence 44 23333444455555555555443 223344445555555555555444321 2221 234455555555
Q ss_pred ccCCCCchhcCCccccEEecCCCcCC
Q 044133 265 LSGSIPSQIGKLQKLCYLDLSGNSIN 290 (384)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~n~~~ 290 (384)
+. .+|-.|..|..|++|-|.+|.+.
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCC
Confidence 54 34444555555555555555554
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.84 E-value=1.2e-10 Score=104.18 Aligned_cols=169 Identities=34% Similarity=0.515 Sum_probs=116.0
Q ss_pred EEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCc
Q 044133 9 HLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNE 88 (384)
Q Consensus 9 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 88 (384)
..+++.|++. ..+..+..|..|+.+.+..|.+- .++.++.++..|+.++++.|++. ..|..+..++ |+.|-+++|+
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNk 154 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNK 154 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCc
Confidence 4566677666 45566667777777777776665 55667777777788888887776 4455555555 7777777777
Q ss_pred ccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCcc
Q 044133 89 IGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPST 168 (384)
Q Consensus 89 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 168 (384)
++ ..|..++...+|..|+.+.|.+.+ .+.-+.++.+|+.|.+..|.+.. .+..+..++ |..||++.|++. .+|..
T Consensus 155 l~-~lp~~ig~~~tl~~ld~s~nei~s-lpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp-Li~lDfScNkis-~iPv~ 229 (722)
T KOG0532|consen 155 LT-SLPEEIGLLPTLAHLDVSKNEIQS-LPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP-LIRLDFSCNKIS-YLPVD 229 (722)
T ss_pred cc-cCCcccccchhHHHhhhhhhhhhh-chHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc-eeeeecccCcee-ecchh
Confidence 77 666667777778888888877763 34456667777777777777764 334444333 677777777776 56667
Q ss_pred ccCcCCCCeeeccccccc
Q 044133 169 IASLVNLKSLSLHYNNLI 186 (384)
Q Consensus 169 ~~~~~~L~~L~l~~~~~~ 186 (384)
|.++..|++|-+..|.+.
T Consensus 230 fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 230 FRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhhhheeeeeccCCCC
Confidence 777777777777777665
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=2.6e-11 Score=99.85 Aligned_cols=179 Identities=23% Similarity=0.180 Sum_probs=112.4
Q ss_pred CCCeeeccCCcccc-cCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCc-ccccCC-cCCCCCCCCCEE
Q 044133 30 KLKILNLSSNSLVG-NVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNE-IGGSIP-STIGHLKRLRIL 106 (384)
Q Consensus 30 ~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~~~~l~~L~~L 106 (384)
.|+++||+...++. .....++.|.+|+.|++.++++.+.....+++..+|+.++++.+. ++.... .-+..|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 57888887776662 233345677788888888887765555556777788888887653 221111 124567888888
Q ss_pred EcCCCcccccC-CcCC-cCCCCCCEEEccCCcCc---ccCCccccCCcccceeeccccc-ccCCCCccccCcCCCCeeec
Q 044133 107 DLSQNKLVGPI-PSSV-GPLTQLTTLNMHSNRIN---GSIPLEIGNLNFLQVLGLSDNK-LEGPIPSTIASLVNLKSLSL 180 (384)
Q Consensus 107 ~l~~~~~~~~~-~~~l-~~l~~L~~L~l~~~~~~---~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l 180 (384)
+++.|...... .... .--++|..|+++|+.-. .....-...+|+|.+||++++. ++......|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 88888754321 1111 12356777777776421 1111223467888889998875 44444556778888999999
Q ss_pred cccccc-CCCCccccCCCCCCEEEccCCc
Q 044133 181 HYNNLI-GPIPSTLGHLNRLTDLDLSENK 208 (384)
Q Consensus 181 ~~~~~~-~~~~~~~~~~~~L~~L~l~~~~ 208 (384)
++|... ....-.+...|.|.+|+..++-
T Consensus 346 sRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcCCChHHeeeeccCcceEEEEecccc
Confidence 888532 2222345677888888887763
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=3.4e-10 Score=93.43 Aligned_cols=183 Identities=26% Similarity=0.267 Sum_probs=124.0
Q ss_pred CCCEEEccCCcCccc-CCccccCCcccceeecccccccCCCCccccCcCCCCeeeccccc-ccCCCC-ccccCCCCCCEE
Q 044133 126 QLTTLNMHSNRINGS-IPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNN-LIGPIP-STLGHLNRLTDL 202 (384)
Q Consensus 126 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~~L~~L 202 (384)
.|+.+|+++..++.. ....+..+.+|+.|.+.++.+.+.....++...+|+.|+++.+. +++... ..+.+|+.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 588888887776532 23346678889999999988887777778888899999998764 333221 345788999999
Q ss_pred EccCCcccccC-CccCCC-CCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCC-cccCCCCchhcCCccc
Q 044133 203 DLSENKLVGPI-PSSVGH-LNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNN-LLSGSIPSQIGKLQKL 279 (384)
Q Consensus 203 ~l~~~~~~~~~-~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L 279 (384)
++++|.+.... ...... -++|+.|+++|+.-. +....+ ......||+|..|||++| .++......|-.++.|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn-l~~sh~----~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN-LQKSHL----STLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhh-hhhhHH----HHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 99998764321 111112 247888888886311 100011 122345889999999987 4555455667788999
Q ss_pred cEEecCCCcCCCCCchh---hcCCCCCcEEeCCCCcccc
Q 044133 280 CYLDLSGNSINGKIPYQ---LGAIPGIHTVDLSMNNLSG 315 (384)
Q Consensus 280 ~~L~l~~n~~~~~~~~~---l~~~~~L~~L~l~~n~~~~ 315 (384)
++|.++.|... +|+. +...|+|.+|++.|+--.+
T Consensus 341 ~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsdt 377 (419)
T KOG2120|consen 341 QHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSDT 377 (419)
T ss_pred eeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCch
Confidence 99999999643 3443 4667889999998885543
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.62 E-value=6.2e-09 Score=86.09 Aligned_cols=207 Identities=20% Similarity=0.170 Sum_probs=104.5
Q ss_pred CCcEEeccCCcccccCC-ccc-CCCCCCCEEECcCCccccc--CCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCE
Q 044133 54 QLTTLAIASNQINGSIP-LEI-ENLKVLHVLDLSRNEIGGS--IPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTT 129 (384)
Q Consensus 54 ~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 129 (384)
.++.+.+.++.+..+.. ..| ..++.++++|+.+|.+++. +...+.++|+|+.|+++.|.+.......-....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 44455666665543311 112 2456777777777766522 2233556777777777777765332221123456777
Q ss_pred EEccCCcCcc-cCCccccCCcccceeecccccccCCC--CccccC-cCCCCeeecccccccCC--CCccccCCCCCCEEE
Q 044133 130 LNMHSNRING-SIPLEIGNLNFLQVLGLSDNKLEGPI--PSTIAS-LVNLKSLSLHYNNLIGP--IPSTLGHLNRLTDLD 203 (384)
Q Consensus 130 L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~-~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ 203 (384)
|-+.+..+.- .....+..+|.++.|+++.|.+.... ...... -+.+++++.-+|..... ....-+-+|++..+-
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 7776655431 22334556677777777776432111 011111 12344555444432210 111123345666666
Q ss_pred ccCCccccc-CCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccC
Q 044133 204 LSENKLVGP-IPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSG 267 (384)
Q Consensus 204 l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 267 (384)
+..|++.+. ....+..+|.+-.|+++.+++.++... ..+..+++|..|.++++.+.+
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasv-------D~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASV-------DALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHH-------HHHcCCchhheeeccCCcccc
Confidence 666655322 223444555555666666666554321 234446666666666666553
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.61 E-value=3.8e-10 Score=103.78 Aligned_cols=197 Identities=30% Similarity=0.308 Sum_probs=93.6
Q ss_pred CCCCEEECcCCcccccC-CcCCCCCCCCCEEEcCCCcccccCCcCCcCC-CCCCEEEccCCcCc---ccC---CccccC-
Q 044133 77 KVLHVLDLSRNEIGGSI-PSTIGHLKRLRILDLSQNKLVGPIPSSVGPL-TQLTTLNMHSNRIN---GSI---PLEIGN- 147 (384)
Q Consensus 77 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~---~~~---~~~~~~- 147 (384)
++++.+.+-...-.+.. |-.+..+.+|++|.+.+|.+.. ...+..+ ..|+.|...+. +. ... ...+.+
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNS 160 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccc
Confidence 44445544433222221 4445566777777777776653 1222222 23444443321 11 000 001111
Q ss_pred --CcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCe
Q 044133 148 --LNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQD 225 (384)
Q Consensus 148 --~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 225 (384)
...|...+++.|.+. .+.+.+.-++.++.|+++.|++++. ..+..+++|++||++.|.+..+......++. |+.
T Consensus 161 ~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 161 PVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQL 236 (1096)
T ss_pred hhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-hee
Confidence 123445555555554 3444555556666666666666543 3555666666666666655533332333333 566
Q ss_pred eecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCC-CCchhcCCccccEEecCCCcCC
Q 044133 226 LDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGS-IPSQIGKLQKLCYLDLSGNSIN 290 (384)
Q Consensus 226 L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~ 290 (384)
|.+++|.++.+ ..+.++.+|+.||+++|-+.+. ....+..+..|+.|.|.||.+-
T Consensus 237 L~lrnN~l~tL----------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 237 LNLRNNALTTL----------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeecccHHHhh----------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 66666655544 2234455566666666554431 1122334455556666666554
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.59 E-value=2.5e-09 Score=87.19 Aligned_cols=169 Identities=21% Similarity=0.192 Sum_probs=89.2
Q ss_pred CCCCCCCCCEEEcCCCcccccCC----cCCcCCCCCCEEEccCCcCcccCCcc-------------ccCCcccceeeccc
Q 044133 96 TIGHLKRLRILDLSQNKLVGPIP----SSVGPLTQLTTLNMHSNRINGSIPLE-------------IGNLNFLQVLGLSD 158 (384)
Q Consensus 96 ~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~ 158 (384)
++-+||+|+.+++++|.+....+ +.+...+.|++|.+++|.+..+...- ....|.|+.+..+.
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr 166 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR 166 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence 34456666666666665443222 23344566777777776654222111 12446777788777
Q ss_pred ccccCCCCc----cccCcCCCCeeecccccccCCCCc-----cccCCCCCCEEEccCCcccc----cCCccCCCCCCCCe
Q 044133 159 NKLEGPIPS----TIASLVNLKSLSLHYNNLIGPIPS-----TLGHLNRLTDLDLSENKLVG----PIPSSVGHLNFLQD 225 (384)
Q Consensus 159 ~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~ 225 (384)
|++...... .+.....|+++.+..|.+...... .+..+.+|+.|++.+|.++. .....+..++.|++
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE 246 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE 246 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence 776532211 122335677788877777643221 22346777777777776642 23344455566677
Q ss_pred eecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCccc
Q 044133 226 LDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLS 266 (384)
Q Consensus 226 L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 266 (384)
|.+.+|-++.-+...+.....+. ..|+|..|...+|.+.
T Consensus 247 L~lnDClls~~G~~~v~~~f~e~--~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 247 LRLNDCLLSNEGVKSVLRRFNEK--FVPNLMPLPGDYNERR 285 (388)
T ss_pred ccccchhhccccHHHHHHHhhhh--cCCCccccccchhhhc
Confidence 77777765544432222111111 1355666666555443
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=3.3e-08 Score=81.87 Aligned_cols=231 Identities=21% Similarity=0.151 Sum_probs=133.7
Q ss_pred CCeeeccCCcccccCC-hhh-hCCCCCcEEeccCCcccc--cCCcccCCCCCCCEEECcCCcccccCCcCC-CCCCCCCE
Q 044133 31 LKILNLSSNSLVGNVP-STL-SHLTQLTTLAIASNQING--SIPLEIENLKVLHVLDLSRNEIGGSIPSTI-GHLKRLRI 105 (384)
Q Consensus 31 L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~ 105 (384)
++.+.+.++.+..... ..| ..+..++.+++.+|.+++ .....+..+|.|+.|+++.|++... ...+ ....+|++
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRV 125 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEE
Confidence 3455566665553211 112 456778888888888863 2233456888888888888887632 2333 35578888
Q ss_pred EEcCCCcccc-cCCcCCcCCCCCCEEEccCCcCcccC--Ccccc-CCcccceeecccccccCC--CCccccCcCCCCeee
Q 044133 106 LDLSQNKLVG-PIPSSVGPLTQLTTLNMHSNRINGSI--PLEIG-NLNFLQVLGLSDNKLEGP--IPSTIASLVNLKSLS 179 (384)
Q Consensus 106 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~-~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~ 179 (384)
|.+.+..+.= .....+..+|.++++.++.|...... ..... --+.+.++..-.|....- .-..-..+|++..+.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 8888877531 23345566778888888777432110 00011 112344444444432100 001112356778888
Q ss_pred cccccccCC-CCccccCCCCCCEEEccCCcccc-cCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcE
Q 044133 180 LHYNNLIGP-IPSTLGHLNRLTDLDLSENKLVG-PIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTT 257 (384)
Q Consensus 180 l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~ 257 (384)
+..|++... ....+..++.+-.|.++.+++.+ ...+.+.++++|..|.++++++.+--.+. ...--.+..+++++.
T Consensus 206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~--err~llIaRL~~v~v 283 (418)
T KOG2982|consen 206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGG--ERRFLLIARLTKVQV 283 (418)
T ss_pred eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCC--cceEEEEeeccceEE
Confidence 888876543 23455667777788888887753 34467888999999999999876533221 111123455677777
Q ss_pred EEccCCccc
Q 044133 258 LILGNNLLS 266 (384)
Q Consensus 258 L~l~~~~~~ 266 (384)
|+=+ +++
T Consensus 284 LNGs--kIs 290 (418)
T KOG2982|consen 284 LNGS--KIS 290 (418)
T ss_pred ecCc--ccc
Confidence 6533 554
No 49
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.43 E-value=3.4e-09 Score=91.56 Aligned_cols=276 Identities=18% Similarity=0.130 Sum_probs=159.3
Q ss_pred CCCeeeccCCccccc--CChhhhCCCCCcEEeccCCccc-ccCCccc-CCCCCCCEEECcCCc-ccccCCc-CCCCCCCC
Q 044133 30 KLKILNLSSNSLVGN--VPSTLSHLTQLTTLAIASNQIN-GSIPLEI-ENLKVLHVLDLSRNE-IGGSIPS-TIGHLKRL 103 (384)
Q Consensus 30 ~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~-~~~~l~~L 103 (384)
.|+.|.+.++.-.+. ....-.+||++++|.+.+|... +.....+ ..|++|+++++..|. +++.... ....|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 577788877754422 2233466888888888877632 1111122 367888888887753 3332222 23467888
Q ss_pred CEEEcCCCc-cccc-CCcCCcCCCCCCEEEccCCcCcccCCccc----cCCcccceeeccccc-ccCCC-CccccCcCCC
Q 044133 104 RILDLSQNK-LVGP-IPSSVGPLTQLTTLNMHSNRINGSIPLEI----GNLNFLQVLGLSDNK-LEGPI-PSTIASLVNL 175 (384)
Q Consensus 104 ~~L~l~~~~-~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~l~~~~-~~~~~-~~~~~~~~~L 175 (384)
++++++.|. +++. ......++..++.+.+.+|.-. ....+ ...+-+.++++..|. +++.. ...-..+..|
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 888888876 3321 1122344555666655554321 11111 233345556655553 33221 1112345677
Q ss_pred Ceeeccccccc-CCCC-ccccCCCCCCEEEccCCc-ccccCCccC-CCCCCCCeeecCCCCCCCCCCCcccCCCCccccC
Q 044133 176 KSLSLHYNNLI-GPIP-STLGHLNRLTDLDLSENK-LVGPIPSSV-GHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMN 251 (384)
Q Consensus 176 ~~L~l~~~~~~-~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~ 251 (384)
+.+..+++... .... ..-.++.+|+.+.+..|+ +++.-...+ .+++.|+.+++.++...... .+...-.+
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~------tL~sls~~ 370 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG------TLASLSRN 370 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh------hHhhhccC
Confidence 88877765432 1111 222467888999888886 333322222 45678888888887543221 12233456
Q ss_pred CCCCcEEEccCCc-ccCCCCchh----cCCccccEEecCCCcC-CCCCchhhcCCCCCcEEeCCCCcc
Q 044133 252 CSKLTTLILGNNL-LSGSIPSQI----GKLQKLCYLDLSGNSI-NGKIPYQLGAIPGIHTVDLSMNNL 313 (384)
Q Consensus 252 ~~~L~~L~l~~~~-~~~~~~~~~----~~~~~L~~L~l~~n~~-~~~~~~~l~~~~~L~~L~l~~n~~ 313 (384)
++.|+.+.+++|. +++.....+ ..+..++.+.+++++. ++...+.+..+++|+.+++-+++-
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 8899999999885 444322333 4567888999999954 444667788899999999988873
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.42 E-value=1.6e-09 Score=99.75 Aligned_cols=127 Identities=30% Similarity=0.263 Sum_probs=81.0
Q ss_pred CCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEcc
Q 044133 54 QLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMH 133 (384)
Q Consensus 54 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (384)
.|...+.+.|.+. ....++.-++.|+.|++++|++... +.+..|++|++|+|+.|.+..+......++. |..|.+.
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 3555566666654 3344556667788888888877633 3667778888888888877644333333343 7778888
Q ss_pred CCcCcccCCccccCCcccceeecccccccCCC-CccccCcCCCCeeeccccccc
Q 044133 134 SNRINGSIPLEIGNLNFLQVLGLSDNKLEGPI-PSTIASLVNLKSLSLHYNNLI 186 (384)
Q Consensus 134 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 186 (384)
+|.++.. ..+.++.+|+.||+++|-+.+.. ...+..+..|+.|++.+|++-
T Consensus 241 nN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 8777633 34567777888888887665321 233445567777777777653
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.42 E-value=5.2e-09 Score=85.40 Aligned_cols=236 Identities=21% Similarity=0.190 Sum_probs=141.4
Q ss_pred CCCCCEEECcCCcccccC----CcCCCCCCCCCEEEcCCCccc----------ccCCcCCcCCCCCCEEEccCCcCcccC
Q 044133 76 LKVLHVLDLSRNEIGGSI----PSTIGHLKRLRILDLSQNKLV----------GPIPSSVGPLTQLTTLNMHSNRINGSI 141 (384)
Q Consensus 76 ~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~----------~~~~~~l~~l~~L~~L~l~~~~~~~~~ 141 (384)
+..+..+++++|.++..- ...+.+-.+|+..++++--.. ......+-.||+|+.++++.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 455666666666654221 122333456666666543111 022345667899999999999887555
Q ss_pred Ccc----ccCCcccceeecccccccCCCCcc-------------ccCcCCCCeeecccccccCCCC----ccccCCCCCC
Q 044133 142 PLE----IGNLNFLQVLGLSDNKLEGPIPST-------------IASLVNLKSLSLHYNNLIGPIP----STLGHLNRLT 200 (384)
Q Consensus 142 ~~~----~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~ 200 (384)
+.. +.+...|.+|.+.+|.+....... .+.-|.|+.+...+|++-.... ..+..-..|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 443 445678999999998765432221 2344778888888887643211 1233335788
Q ss_pred EEEccCCcccccC-----CccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchh--
Q 044133 201 DLDLSENKLVGPI-----PSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQI-- 273 (384)
Q Consensus 201 ~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-- 273 (384)
++.+.+|.+.... ...+..+.+|+.|++.+|.++..+...+. ..++.++.|+.|.+.+|-++......+
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La----~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA----DALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH----HHhcccchhhhccccchhhccccHHHHHH
Confidence 8888888764321 11223456888888888877655443222 345556778888888887765544333
Q ss_pred ----cCCccccEEecCCCcCCCCCch-----hh--cCCCCCcEEeCCCCcccc
Q 044133 274 ----GKLQKLCYLDLSGNSINGKIPY-----QL--GAIPGIHTVDLSMNNLSG 315 (384)
Q Consensus 274 ----~~~~~L~~L~l~~n~~~~~~~~-----~l--~~~~~L~~L~l~~n~~~~ 315 (384)
...++|..|-...|.+.+.... .+ ...|-|..+.+.||++..
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred HhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 2346777777777765543221 11 346667777777787764
No 52
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.41 E-value=1.1e-06 Score=66.54 Aligned_cols=124 Identities=16% Similarity=0.172 Sum_probs=55.1
Q ss_pred ChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCC
Q 044133 22 PPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLK 101 (384)
Q Consensus 22 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 101 (384)
..+|.+|++|+.+.+.. .+..+...+|.++++|+.+.+.++ +.......|..+++++.+.+.. .+.......+..++
T Consensus 5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~ 81 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT 81 (129)
T ss_dssp TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence 34566777777777653 444455566777767777777664 4445555666666677777654 33323344555666
Q ss_pred CCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCccc
Q 044133 102 RLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFL 151 (384)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 151 (384)
+|+.+.+..+ +..+....|.++ .|+.+.+.. .+..+....|.++++|
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 6666666553 444444555555 666666554 3333344445444443
No 53
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.39 E-value=1e-06 Score=66.79 Aligned_cols=122 Identities=16% Similarity=0.196 Sum_probs=74.2
Q ss_pred CCCCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCC
Q 044133 1 MGRLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLH 80 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 80 (384)
|..+++|+.+.+.. .++.+...+|.++++|+.+.+..+ +......+|.+++.|+.+.+.+ .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 56788999999986 466677788999999999999875 7767778899999999999986 45446667888899999
Q ss_pred EEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCC
Q 044133 81 VLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLT 128 (384)
Q Consensus 81 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 128 (384)
.+++..+ +.......+.++ +|+.+.+.. .+..+....|.++++|+
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 9999765 554556678887 999999886 45556667888887764
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=2.2e-08 Score=73.19 Aligned_cols=137 Identities=24% Similarity=0.152 Sum_probs=71.6
Q ss_pred CCeeecccccccCC--CCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCC
Q 044133 175 LKSLSLHYNNLIGP--IPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNC 252 (384)
Q Consensus 175 L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 252 (384)
+..+++++|++... ....+.....|+..++++|.+.++.......++.++.+++++|++.+++. .+..+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPe---------E~Aam 99 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPE---------ELAAM 99 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchH---------HHhhh
Confidence 34445555544311 11122333445556666666655544444555566666676666666533 34446
Q ss_pred CCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccCcccc
Q 044133 253 SKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFVR 322 (384)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~ 322 (384)
|.|+.|+++.|.+. ..++.+..+.++.+|+..+|.+...... +......-..++.++++.+..+..++
T Consensus 100 ~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d-l~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 100 PALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD-LFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred HHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH-HhccccHHHHHhcCCcccccCccccc
Confidence 66777777777666 4444444466666677766666633323 32222222334455556655554433
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.29 E-value=7.7e-09 Score=89.38 Aligned_cols=297 Identities=20% Similarity=0.145 Sum_probs=169.9
Q ss_pred CCCEEeccCCcCccC-CCh-hhhcCCCCCeeeccCCc-ccccCChhh-hCCCCCcEEeccCCc-ccccCCc-ccCCCCCC
Q 044133 6 NLVHLDLSNNHLTGH-IPP-TLGRLSKLKILNLSSNS-LVGNVPSTL-SHLTQLTTLAIASNQ-INGSIPL-EIENLKVL 79 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~-~~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~~L 79 (384)
.|++|++.++.-.+. ... ...+|+++++|.+.+|. ++......+ ..|++|+++++..|. +++.... .-..|++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 578888888854322 222 33578999999998885 332222222 568899999998854 3322222 22478999
Q ss_pred CEEECcCCc-ccccCC-cCCCCCCCCCEEEcCCCccccc--CCcCCcCCCCCCEEEccCCc-CcccCC-ccccCCcccce
Q 044133 80 HVLDLSRNE-IGGSIP-STIGHLKRLRILDLSQNKLVGP--IPSSVGPLTQLTTLNMHSNR-INGSIP-LEIGNLNFLQV 153 (384)
Q Consensus 80 ~~L~l~~~~-~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~-~~~~~~-~~~~~~~~L~~ 153 (384)
+++++++|. +..... ....++..++.+...+|.-.+. ....-..+..+..+++..+. +++... ..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 999999875 332111 2234566677777776542111 11111234455556655442 222111 11124556788
Q ss_pred eeccccc-ccCCCCccc-cCcCCCCeeeccccc-ccCCCCccc-cCCCCCCEEEccCCcccc--cCCccCCCCCCCCeee
Q 044133 154 LGLSDNK-LEGPIPSTI-ASLVNLKSLSLHYNN-LIGPIPSTL-GHLNRLTDLDLSENKLVG--PIPSSVGHLNFLQDLD 227 (384)
Q Consensus 154 L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~ 227 (384)
+..+++. +.+.....+ .++.+|+.+.+++|+ ++......+ ++++.|+.+++.++.... .....-.+++.|+++.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 8887764 222222222 356788888888875 333222222 457788888888775421 1223335678888888
Q ss_pred cCCCCC-CCCCCCcccCCCCccccCCCCCcEEEccCCccc-CCCCchhcCCccccEEecCCCc-CCCCCchhh-cCCCCC
Q 044133 228 LSNNKL-EDLSDNKLDGPIPPELMNCSKLTTLILGNNLLS-GSIPSQIGKLQKLCYLDLSGNS-INGKIPYQL-GAIPGI 303 (384)
Q Consensus 228 l~~n~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~l-~~~~~L 303 (384)
+++|.. ++.+...+. ..-.....++.+.+.++..+ +.....+..+++|+.+++-+++ ++......| .++|++
T Consensus 379 lshce~itD~gi~~l~----~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i 454 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLS----SSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNI 454 (483)
T ss_pred hhhhhhhhhhhhhhhh----hccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccc
Confidence 888754 333221222 22344678889999998654 3445567888999999998884 333333333 346666
Q ss_pred cEE
Q 044133 304 HTV 306 (384)
Q Consensus 304 ~~L 306 (384)
+..
T Consensus 455 ~v~ 457 (483)
T KOG4341|consen 455 KVH 457 (483)
T ss_pred eeh
Confidence 554
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.09 E-value=1.9e-06 Score=82.93 Aligned_cols=180 Identities=18% Similarity=0.175 Sum_probs=88.9
Q ss_pred CCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCcc-------------c--cCcCCCCeeecccccccC-CC
Q 044133 126 QLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPST-------------I--ASLVNLKSLSLHYNNLIG-PI 189 (384)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~--~~~~~L~~L~l~~~~~~~-~~ 189 (384)
++..+++.+............. ..|+++.+++-......... + ..-.+|+.|++++...-. .-
T Consensus 61 ~ltki~l~~~~~~~~~~~~l~~-~~L~sl~LGnl~~~k~~~~~~~~idi~~lL~~~Ln~~sr~nL~~LdI~G~~~~s~~W 139 (699)
T KOG3665|consen 61 NLTKIDLKNVTLQHQTLEMLRK-QDLESLKLGNLDKIKQDYLDDATIDIISLLKDLLNEESRQNLQHLDISGSELFSNGW 139 (699)
T ss_pred eeEEeeccceecchhHHHHHhh-ccccccCCcchHhhhhhhhhhhhccHHHHHHHHHhHHHHHhhhhcCccccchhhccH
Confidence 5566666665554322222323 33777777764432110000 0 011356677766543211 00
Q ss_pred C-ccccCCCCCCEEEccCCccccc-CCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccC
Q 044133 190 P-STLGHLNRLTDLDLSENKLVGP-IPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSG 267 (384)
Q Consensus 190 ~-~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 267 (384)
+ ..-..+|+|+.|.+++-.+... .......+|+|..||+++.+++++ ..++.+++|+.|.+.+-.+..
T Consensus 140 ~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl----------~GIS~LknLq~L~mrnLe~e~ 209 (699)
T KOG3665|consen 140 PKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL----------SGISRLKNLQVLSMRNLEFES 209 (699)
T ss_pred HHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc----------HHHhccccHHHHhccCCCCCc
Confidence 1 1112366777777765444221 122335566677777777666654 224456666666666655543
Q ss_pred -CCCchhcCCccccEEecCCCcCCCCC--c----hhhcCCCCCcEEeCCCCccccc
Q 044133 268 -SIPSQIGKLQKLCYLDLSGNSINGKI--P----YQLGAIPGIHTVDLSMNNLSGG 316 (384)
Q Consensus 268 -~~~~~~~~~~~L~~L~l~~n~~~~~~--~----~~l~~~~~L~~L~l~~n~~~~~ 316 (384)
.....+..+++|+.||+|........ . +.-..+|.|+.||.+++.+...
T Consensus 210 ~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 210 YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 22334556666677776665444221 1 1112356666666666665543
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.02 E-value=1.9e-06 Score=82.88 Aligned_cols=132 Identities=22% Similarity=0.237 Sum_probs=58.3
Q ss_pred CCCCeeeccCCcccccCC--hhhhCCCCCcEEeccCCccccc-CCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCE
Q 044133 29 SKLKILNLSSNSLVGNVP--STLSHLTQLTTLAIASNQINGS-IPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRI 105 (384)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 105 (384)
.+|++|++++.......+ ..-.-+|.|++|.+.+-.+... ......++|+|..||+++++++.. .++..+++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 355555555543221111 1112245555555555443211 112234555555555555555422 44555555555
Q ss_pred EEcCCCcccc-cCCcCCcCCCCCCEEEccCCcCcccCC------ccccCCcccceeeccccccc
Q 044133 106 LDLSQNKLVG-PIPSSVGPLTQLTTLNMHSNRINGSIP------LEIGNLNFLQVLGLSDNKLE 162 (384)
Q Consensus 106 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~------~~~~~~~~L~~L~l~~~~~~ 162 (384)
|.+.+-.+.. .....+..+++|+.||++......... ..-..+|+|+.||.+++++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence 5555544332 111234445555555555443322110 01123555666666655544
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.01 E-value=1.6e-05 Score=62.58 Aligned_cols=57 Identities=30% Similarity=0.410 Sum_probs=24.9
Q ss_pred CCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcC
Q 044133 79 LHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRI 137 (384)
Q Consensus 79 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 137 (384)
...+|+++|.+... +.|..++.|++|.++.|+++.+.+..-..+++|+.|.+++|.+
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 34444544444311 2334444445555555554444333333344444444444444
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.00 E-value=1.4e-05 Score=62.94 Aligned_cols=108 Identities=29% Similarity=0.382 Sum_probs=73.6
Q ss_pred CCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCC-CCchhcC
Q 044133 197 NRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGS-IPSQIGK 275 (384)
Q Consensus 197 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~ 275 (384)
.....+++++|.+-.. ..|..++.|.+|.+.+|.|+.+... .-.-+|+|..|.+.+|.+... ..+.+..
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~--------L~~~~p~l~~L~LtnNsi~~l~dl~pLa~ 111 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPD--------LDTFLPNLKTLILTNNSIQELGDLDPLAS 111 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccc--------hhhhccccceEEecCcchhhhhhcchhcc
Confidence 4566788888876432 4567778888888888888776431 122257788888888877642 2344567
Q ss_pred CccccEEecCCCcCCCCC---chhhcCCCCCcEEeCCCCccc
Q 044133 276 LQKLCYLDLSGNSINGKI---PYQLGAIPGIHTVDLSMNNLS 314 (384)
Q Consensus 276 ~~~L~~L~l~~n~~~~~~---~~~l~~~~~L~~L~l~~n~~~ 314 (384)
|+.|++|.+-+|++...- -..++.+|+|+.||+.+-.-.
T Consensus 112 ~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 112 CPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred CCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 788888888888777432 234677888888888776543
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.97 E-value=8.8e-06 Score=48.05 Aligned_cols=36 Identities=42% Similarity=0.638 Sum_probs=17.9
Q ss_pred cccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccc
Q 044133 278 KLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLS 314 (384)
Q Consensus 278 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 314 (384)
+|++|++++|++. .++..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555555 33334555555555555555554
No 61
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.86 E-value=1.6e-05 Score=47.00 Aligned_cols=37 Identities=51% Similarity=0.823 Sum_probs=22.6
Q ss_pred CCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCccc
Q 044133 5 RNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLV 42 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 42 (384)
++|++|++++|++++ .+..+.+|++|++|++++|.++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 456777777777763 3334667777777777776665
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.78 E-value=7.5e-07 Score=65.36 Aligned_cols=85 Identities=20% Similarity=0.140 Sum_probs=45.6
Q ss_pred CCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCC
Q 044133 173 VNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNC 252 (384)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 252 (384)
..|..+++++|.+.+..+..-..++.++.|++++|.++++. ..+..++.|+.++++.|.+...+ ..+..+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvP-eE~Aam~aLr~lNl~~N~l~~~p---------~vi~~L 122 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVP-EELAAMPALRSLNLRFNPLNAEP---------RVIAPL 122 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhch-HHHhhhHHhhhcccccCccccch---------HHHHHH
Confidence 44555566666655443333344556666666666665333 33666666666666666554432 223334
Q ss_pred CCCcEEEccCCcccC
Q 044133 253 SKLTTLILGNNLLSG 267 (384)
Q Consensus 253 ~~L~~L~l~~~~~~~ 267 (384)
.++-.|+..+|.+-.
T Consensus 123 ~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 123 IKLDMLDSPENARAE 137 (177)
T ss_pred HhHHHhcCCCCcccc
Confidence 555566666665553
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.72 E-value=0.00027 Score=63.12 Aligned_cols=139 Identities=17% Similarity=0.199 Sum_probs=73.0
Q ss_pred CcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCC
Q 044133 121 VGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLT 200 (384)
Q Consensus 121 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 200 (384)
+..+.+++.|++++|.++.. | ...++|++|.+++|......+..+ .++|+.|.+++|...... .+.|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sL------P~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGL------PESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccc------ccccc
Confidence 34467788888888876643 2 123468888887754333444433 247788888776321111 24567
Q ss_pred EEEccCCcccccCCccCCCC-CCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccc
Q 044133 201 DLDLSENKLVGPIPSSVGHL-NFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKL 279 (384)
Q Consensus 201 ~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 279 (384)
.|++.++.... +..+ ++|+.|.+.++..... ......+ .++|++|++++|... ..|..++ .+|
T Consensus 116 ~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~--~~lp~~L------PsSLk~L~Is~c~~i-~LP~~LP--~SL 179 (426)
T PRK15386 116 SLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQ--ARIDNLI------SPSLKTLSLTGCSNI-ILPEKLP--ESL 179 (426)
T ss_pred eEEeCCCCCcc-----cccCcchHhheeccccccccc--ccccccc------CCcccEEEecCCCcc-cCccccc--ccC
Confidence 77766543321 2223 2566666644321000 0000001 156777777777654 3333333 577
Q ss_pred cEEecCCC
Q 044133 280 CYLDLSGN 287 (384)
Q Consensus 280 ~~L~l~~n 287 (384)
++|.++.+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 77777665
No 64
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00024 Score=63.45 Aligned_cols=138 Identities=18% Similarity=0.299 Sum_probs=87.3
Q ss_pred ccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCc-ccccCCccCCCCCCC
Q 044133 145 IGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENK-LVGPIPSSVGHLNFL 223 (384)
Q Consensus 145 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L 223 (384)
+..+.+++.|++++|.+.. +|. -.++|+.|.+++|.-....+..+ +++|+.|++++|. +. .. .++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sL------P~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GL------PESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cc------cccc
Confidence 4456889999999997763 341 23469999998865444445444 3689999999883 33 22 2368
Q ss_pred CeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCccc-C-CCCchhcCCccccEEecCCCcCCCCCchhhcCCC
Q 044133 224 QDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLS-G-SIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIP 301 (384)
Q Consensus 224 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~ 301 (384)
+.|++.++....+.. +| ++|+.|.+.+++.. . ..+..+ .++|++|++++|... ..|..+. .
T Consensus 115 e~L~L~~n~~~~L~~------LP------ssLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~ 177 (426)
T PRK15386 115 RSLEIKGSATDSIKN------VP------NGLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--E 177 (426)
T ss_pred ceEEeCCCCCccccc------Cc------chHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--c
Confidence 888887765443321 11 46778887553311 1 111112 268999999999866 3454443 5
Q ss_pred CCcEEeCCCCc
Q 044133 302 GIHTVDLSMNN 312 (384)
Q Consensus 302 ~L~~L~l~~n~ 312 (384)
+|+.|+++.+.
T Consensus 178 SLk~L~ls~n~ 188 (426)
T PRK15386 178 SLQSITLHIEQ 188 (426)
T ss_pred cCcEEEecccc
Confidence 89999998763
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.55 E-value=4.4e-06 Score=78.72 Aligned_cols=109 Identities=18% Similarity=0.071 Sum_probs=50.7
Q ss_pred CCCCcEEeccCCccccc--CCcccCCCCCCCEEECcCC-cccccC----CcCCCCCCCCCEEEcCCCc-ccccCCcCCc-
Q 044133 52 LTQLTTLAIASNQINGS--IPLEIENLKVLHVLDLSRN-EIGGSI----PSTIGHLKRLRILDLSQNK-LVGPIPSSVG- 122 (384)
Q Consensus 52 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~- 122 (384)
++.|+.+.+.++..... .......++.|++|+++++ ...... ......+++|+.|+++.+. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666665533211 1122345566666666552 111010 1122334666666666665 3322222222
Q ss_pred CCCCCCEEEccCCc-CcccC-CccccCCcccceeeccccc
Q 044133 123 PLTQLTTLNMHSNR-INGSI-PLEIGNLNFLQVLGLSDNK 160 (384)
Q Consensus 123 ~l~~L~~L~l~~~~-~~~~~-~~~~~~~~~L~~L~l~~~~ 160 (384)
.+++|+.|.+.++. +++.. ......++.|++|+++++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 25666666655554 33221 1122345667777776654
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.48 E-value=3.6e-05 Score=63.21 Aligned_cols=61 Identities=26% Similarity=0.448 Sum_probs=25.1
Q ss_pred CCCCCeeeccCCcccccCChhhhCCCCCcEEeccCC--cccccCCcccCCCCCCCEEECcCCccc
Q 044133 28 LSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASN--QINGSIPLEIENLKVLHVLDLSRNEIG 90 (384)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~ 90 (384)
+..|+.+++.+..++.. ..|..+++|++|.++.| ++..........+|+|+++++++|++.
T Consensus 42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 34444444444433321 12344455555555555 222222212223355555555555443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=6.6e-06 Score=67.92 Aligned_cols=81 Identities=26% Similarity=0.271 Sum_probs=52.6
Q ss_pred CCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCC-cccCCCCCCCEE
Q 044133 4 LRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIP-LEIENLKVLHVL 82 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L 82 (384)
+.+.+.|++-+|.++++ ....+|+.|++|.|+-|.++.. ..|..|.+|++|.|..|.|.+... ..+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34556677777776643 3456777777777777777643 346777777777777777764321 235677777777
Q ss_pred ECcCCc
Q 044133 83 DLSRNE 88 (384)
Q Consensus 83 ~l~~~~ 88 (384)
+|..|.
T Consensus 94 WL~ENP 99 (388)
T KOG2123|consen 94 WLDENP 99 (388)
T ss_pred hhccCC
Confidence 776654
No 68
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.26 E-value=1.9e-05 Score=74.37 Aligned_cols=111 Identities=21% Similarity=0.132 Sum_probs=51.8
Q ss_pred cCCCCCeeeccCCccccc--CChhhhCCCCCcEEeccCC-cccccC----CcccCCCCCCCEEECcCCc-ccccCCcCCC
Q 044133 27 RLSKLKILNLSSNSLVGN--VPSTLSHLTQLTTLAIASN-QINGSI----PLEIENLKVLHVLDLSRNE-IGGSIPSTIG 98 (384)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~-~~~~~~----~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~ 98 (384)
.++.|+.+.+..+.-... .......++.|+.|+++++ ...... ......+++|+.++++++. +++.....+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 356666666655532222 1223345666666666652 111111 1122345666666666655 3333222222
Q ss_pred -CCCCCCEEEcCCCc-ccccCC-cCCcCCCCCCEEEccCCcC
Q 044133 99 -HLKRLRILDLSQNK-LVGPIP-SSVGPLTQLTTLNMHSNRI 137 (384)
Q Consensus 99 -~l~~L~~L~l~~~~-~~~~~~-~~l~~l~~L~~L~l~~~~~ 137 (384)
.|++|++|.+..|. ++...- .....++.|++|+++.+..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 25666666655555 332211 1223455666666665543
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.17 E-value=0.00015 Score=59.63 Aligned_cols=106 Identities=29% Similarity=0.278 Sum_probs=60.1
Q ss_pred CCCCeeecccccccCCCCccccCCCCCCEEEccCCc--ccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCcccc
Q 044133 173 VNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENK--LVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELM 250 (384)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~ 250 (384)
..|+.+.+.+..++.. ..+..+++|++|.++.|. ...-...-...+|+|+++++++|.+.++... ..+.
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-------~pl~ 113 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-------RPLK 113 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-------chhh
Confidence 3444455554444422 345566777777777773 3322222233457777888887777664321 3344
Q ss_pred CCCCCcEEEccCCcccCC---CCchhcCCccccEEecCCC
Q 044133 251 NCSKLTTLILGNNLLSGS---IPSQIGKLQKLCYLDLSGN 287 (384)
Q Consensus 251 ~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~n 287 (384)
.+++|..|++.+|..+.. -...|..+++|++|+-...
T Consensus 114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred hhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 566777788877766542 2234566677777654433
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=3.1e-05 Score=64.10 Aligned_cols=98 Identities=23% Similarity=0.285 Sum_probs=50.2
Q ss_pred CCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCC-CchhcC
Q 044133 197 NRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSI-PSQIGK 275 (384)
Q Consensus 197 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~ 275 (384)
.+.++|++.+|.++++. ....++.|+.|.|+-|.|+.+ ..+..|++|++|+|..|.|.+.. ...+.+
T Consensus 19 ~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL----------~pl~rCtrLkElYLRkN~I~sldEL~YLkn 86 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSL----------APLQRCTRLKELYLRKNCIESLDELEYLKN 86 (388)
T ss_pred HHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccc----------hhHHHHHHHHHHHHHhcccccHHHHHHHhc
Confidence 34556666666655431 234556666666666665554 33445566666666666554322 122345
Q ss_pred CccccEEecCCCcCCCCCch-----hhcCCCCCcEE
Q 044133 276 LQKLCYLDLSGNSINGKIPY-----QLGAIPGIHTV 306 (384)
Q Consensus 276 ~~~L~~L~l~~n~~~~~~~~-----~l~~~~~L~~L 306 (384)
+++|+.|.|..|.-.+.-+. .+..+|+|++|
T Consensus 87 lpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKL 122 (388)
T KOG2123|consen 87 LPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKL 122 (388)
T ss_pred CchhhhHhhccCCcccccchhHHHHHHHHcccchhc
Confidence 55556665555544433221 23445555554
No 71
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=96.27 E-value=0.00065 Score=38.13 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeccc
Q 044133 356 RLVAIILAMVAFLALIFGILIIRRRRD 382 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (384)
+-.+++++++++++++..+++.+|||+
T Consensus 13 Ia~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 13 IAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred EEEEEEechHHHHHHHHHHhheEEecc
Confidence 334445555555555544444444444
No 72
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=96.20 E-value=0.0045 Score=45.13 Aligned_cols=21 Identities=19% Similarity=0.327 Sum_probs=8.7
Q ss_pred CcccchhHHHHHHHHHHHHHH
Q 044133 349 HHKTIATRLVAIILAMVAFLA 369 (384)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~ 369 (384)
.+......++++++++++.++
T Consensus 58 ~h~fs~~~i~~Ii~gv~aGvI 78 (122)
T PF01102_consen 58 VHRFSEPAIIGIIFGVMAGVI 78 (122)
T ss_dssp SSSSS-TCHHHHHHHHHHHHH
T ss_pred ccCccccceeehhHHHHHHHH
Confidence 333333444444444444443
No 73
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=95.97 E-value=0.017 Score=31.86 Aligned_cols=29 Identities=14% Similarity=0.288 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheeccc
Q 044133 354 ATRLVAIILAMVAFLALIFGILIIRRRRD 382 (384)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (384)
..+++++++++++.++.++.+++++||.+
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 34455555555555555555555555543
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.93 E-value=0.0021 Score=51.02 Aligned_cols=83 Identities=22% Similarity=0.216 Sum_probs=46.6
Q ss_pred CCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCC-CCCCCcccCCCCccccCCCCCcEEEccCC-cccCCCCchhcC
Q 044133 198 RLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLE-DLSDNKLDGPIPPELMNCSKLTTLILGNN-LLSGSIPSQIGK 275 (384)
Q Consensus 198 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~ 275 (384)
.++.++-+++.+..+..+.+..++.++.|.+.+|.-- +.....+.+ -.++|+.|++++| .||+.....+..
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-------~~~~L~~L~lsgC~rIT~~GL~~L~~ 174 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG-------LAPSLQDLDLSGCPRITDGGLACLLK 174 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc-------cccchheeeccCCCeechhHHHHHHH
Confidence 4667777777776666666677777777777766421 111111111 1356666666666 455555555555
Q ss_pred CccccEEecCCC
Q 044133 276 LQKLCYLDLSGN 287 (384)
Q Consensus 276 ~~~L~~L~l~~n 287 (384)
+++|+.|.+.+-
T Consensus 175 lknLr~L~l~~l 186 (221)
T KOG3864|consen 175 LKNLRRLHLYDL 186 (221)
T ss_pred hhhhHHHHhcCc
Confidence 566666655543
No 75
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.83 E-value=0.013 Score=28.52 Aligned_cols=12 Identities=67% Similarity=1.063 Sum_probs=5.5
Q ss_pred ccEEecCCCcCC
Q 044133 279 LCYLDLSGNSIN 290 (384)
Q Consensus 279 L~~L~l~~n~~~ 290 (384)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 76
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.47 E-value=0.017 Score=28.12 Aligned_cols=12 Identities=50% Similarity=0.656 Sum_probs=6.0
Q ss_pred CcEEeCCCCccc
Q 044133 303 IHTVDLSMNNLS 314 (384)
Q Consensus 303 L~~L~l~~n~~~ 314 (384)
|++||+++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 444555555444
No 77
>PF15102 TMEM154: TMEM154 protein family
Probab=94.26 E-value=0.027 Score=42.07 Aligned_cols=27 Identities=22% Similarity=0.588 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhheecccC
Q 044133 357 LVAIILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
++..++++++++++++++++|+|||.|
T Consensus 62 lIP~VLLvlLLl~vV~lv~~~kRkr~K 88 (146)
T PF15102_consen 62 LIPLVLLVLLLLSVVCLVIYYKRKRTK 88 (146)
T ss_pred eHHHHHHHHHHHHHHHheeEEeecccC
Confidence 333344455555556666666665554
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.02 E-value=0.00028 Score=65.28 Aligned_cols=184 Identities=28% Similarity=0.246 Sum_probs=84.0
Q ss_pred CCEEEccCCcCcccC----CccccCCcccceeecccccccCCCCcc----ccCc-CCCCeeecccccccCCCC----ccc
Q 044133 127 LTTLNMHSNRINGSI----PLEIGNLNFLQVLGLSDNKLEGPIPST----IASL-VNLKSLSLHYNNLIGPIP----STL 193 (384)
Q Consensus 127 L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~----~~~ 193 (384)
+..+.+.+|.+.... ...+...+.|+.|++++|.+.+..... +... ..+++|.+..|.++.... ..+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 666777777765432 233455677777888777766432221 1222 345556666665553322 233
Q ss_pred cCCCCCCEEEccCCcccc----cCCccCC----CCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCC-CcEEEccCCc
Q 044133 194 GHLNRLTDLDLSENKLVG----PIPSSVG----HLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSK-LTTLILGNNL 264 (384)
Q Consensus 194 ~~~~~L~~L~l~~~~~~~----~~~~~~~----~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~ 264 (384)
.....++.++++.|.+.. ..+..+. ...+++.|.+.+|.+++..-.. +...+...+. +..+++..|+
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~----l~~~l~~~~~~~~el~l~~n~ 244 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCAL----LDEVLASGESLLRELDLASNK 244 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHH----HHHHHhccchhhHHHHHHhcC
Confidence 345556666666555421 1111222 2344555555555544221111 1122222333 3445555555
Q ss_pred ccCCC----CchhcCC-ccccEEecCCCcCCCCCc----hhhcCCCCCcEEeCCCCccc
Q 044133 265 LSGSI----PSQIGKL-QKLCYLDLSGNSINGKIP----YQLGAIPGIHTVDLSMNNLS 314 (384)
Q Consensus 265 ~~~~~----~~~~~~~-~~L~~L~l~~n~~~~~~~----~~l~~~~~L~~L~l~~n~~~ 314 (384)
+.+.. ...+..+ ..++.++++.|.+.+... ..+..++.++.+.+++|++.
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 44321 1222233 344555555555554322 22333445555555555544
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.81 E-value=0.00024 Score=65.71 Aligned_cols=209 Identities=23% Similarity=0.227 Sum_probs=136.6
Q ss_pred CCCEEEcCCCccccc----CCcCCcCCCCCCEEEccCCcCcccCCc----cccCC-cccceeecccccccCCC----Ccc
Q 044133 102 RLRILDLSQNKLVGP----IPSSVGPLTQLTTLNMHSNRINGSIPL----EIGNL-NFLQVLGLSDNKLEGPI----PST 168 (384)
Q Consensus 102 ~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~----~~~ 168 (384)
.+..+.+.+|.+... ....+...+.|..|++++|.+.+.... .+... +.++.|.+..|.++... ...
T Consensus 88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 378888888887643 334566778999999999988743222 22333 56777888888776543 344
Q ss_pred ccCcCCCCeeecccccccCCC----Cccc----cCCCCCCEEEccCCccccc----CCccCCCCCC-CCeeecCCCCCCC
Q 044133 169 IASLVNLKSLSLHYNNLIGPI----PSTL----GHLNRLTDLDLSENKLVGP----IPSSVGHLNF-LQDLDLSNNKLED 235 (384)
Q Consensus 169 ~~~~~~L~~L~l~~~~~~~~~----~~~~----~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~-L~~L~l~~n~~~~ 235 (384)
+...+.++.++++.|.+.... ...+ ....+++.|.+++|.++.. ....+...+. +.++++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 556788899999888775321 1222 2456788999998877532 2233445555 7779999998877
Q ss_pred CCCCcccCCCCccccCC-CCCcEEEccCCcccCCCC----chhcCCccccEEecCCCcCCCCCc----hhhcCCCCCcEE
Q 044133 236 LSDNKLDGPIPPELMNC-SKLTTLILGNNLLSGSIP----SQIGKLQKLCYLDLSGNSINGKIP----YQLGAIPGIHTV 306 (384)
Q Consensus 236 ~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~~~~~----~~l~~~~~L~~L 306 (384)
.....+. +.+... +.++.++++.|.+++... ..+..++.++.+.+.+|.+.+... ..+.....+..+
T Consensus 248 ~g~~~L~----~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~ 323 (478)
T KOG4308|consen 248 VGVEKLL----PCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHL 323 (478)
T ss_pred HHHHHHH----HHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhh
Confidence 6332221 333334 677899999999987543 344677899999999999885432 233344555566
Q ss_pred eCCCCccc
Q 044133 307 DLSMNNLS 314 (384)
Q Consensus 307 ~l~~n~~~ 314 (384)
.+.++...
T Consensus 324 ~l~~~~~~ 331 (478)
T KOG4308|consen 324 VLGGTGKG 331 (478)
T ss_pred hccccCcc
Confidence 66655543
No 80
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.30 E-value=0.0061 Score=48.42 Aligned_cols=82 Identities=23% Similarity=0.197 Sum_probs=56.0
Q ss_pred CCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCC-ccc-CCCCCCCEEECcCCc-ccccCCcCCCCCCCCCEE
Q 044133 30 KLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIP-LEI-ENLKVLHVLDLSRNE-IGGSIPSTIGHLKRLRIL 106 (384)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L 106 (384)
.++.++-+++.+..+..+.+.+++.++.|.+.+|...+..- ..+ .-.++|+.|++++|. |++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46777778877776666777888888888888876542210 111 145789999999874 565555556677888888
Q ss_pred EcCCC
Q 044133 107 DLSQN 111 (384)
Q Consensus 107 ~l~~~ 111 (384)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77664
No 81
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=93.14 E-value=0.038 Score=39.88 Aligned_cols=32 Identities=31% Similarity=0.484 Sum_probs=1.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhheecccC
Q 044133 352 TIATRLVAIILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
...+.+.+.+.++++|++++.++++|+|.|+|
T Consensus 76 ~l~~pi~~sal~v~lVl~llsg~lv~rrcrrr 107 (129)
T PF12191_consen 76 PLLWPILGSALSVVLVLALLSGFLVWRRCRRR 107 (129)
T ss_dssp SSS-----------------------------
T ss_pred ceehhhhhhHHHHHHHHHHHHHHHHHhhhhcc
Confidence 33444544555555666666666666665544
No 82
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=93.03 E-value=0.028 Score=47.99 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheecccC
Q 044133 355 TRLVAIILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
.++.++++++++++|+++++++|+|||+.
T Consensus 148 T~IpaVVI~~iLLIA~iIa~icyrrkR~G 176 (290)
T PF05454_consen 148 TFIPAVVIAAILLIAGIIACICYRRKRKG 176 (290)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 34455555555555555555556655554
No 83
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=92.95 E-value=0.025 Score=42.56 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=12.6
Q ss_pred HHHHHHHHH--HHHHHHHHHHhhheecccC
Q 044133 356 RLVAIILAM--VAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 356 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 383 (384)
+++|++||+ .+++++++.+|++++|++|
T Consensus 50 IVIGvVVGVGg~ill~il~lvf~~c~r~kk 79 (154)
T PF04478_consen 50 IVIGVVVGVGGPILLGILALVFIFCIRRKK 79 (154)
T ss_pred EEEEEEecccHHHHHHHHHhheeEEEeccc
Confidence 455555553 3333334444444444443
No 84
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.34 E-value=0.085 Score=23.78 Aligned_cols=10 Identities=60% Similarity=0.544 Sum_probs=3.1
Q ss_pred CcEEEccCCc
Q 044133 255 LTTLILGNNL 264 (384)
Q Consensus 255 L~~L~l~~~~ 264 (384)
|+.|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 85
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=91.76 E-value=0.23 Score=36.42 Aligned_cols=24 Identities=13% Similarity=0.384 Sum_probs=13.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhh
Q 044133 352 TIATRLVAIILAMVAFLALIFGILI 376 (384)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (384)
...++++|+++|+++++ +++.|++
T Consensus 65 ~i~~Ii~gv~aGvIg~I-lli~y~i 88 (122)
T PF01102_consen 65 AIIGIIFGVMAGVIGII-LLISYCI 88 (122)
T ss_dssp CHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred ceeehhHHHHHHHHHHH-HHHHHHH
Confidence 45666666666665555 4333333
No 86
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=91.27 E-value=0.16 Score=47.61 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=29.2
Q ss_pred CCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhheecccC
Q 044133 342 LANAPPPHHKTIATRLVAIILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
.+.++........|+++|+++.+++|+++++++.|+.+|++|
T Consensus 257 ~a~P~~~s~~~NlWII~gVlvPv~vV~~Iiiil~~~LCRk~K 298 (684)
T PF12877_consen 257 QAEPPAKSPPNNLWIIAGVLVPVLVVLLIIIILYWKLCRKNK 298 (684)
T ss_pred ccCCCCCCCCCCeEEEehHhHHHHHHHHHHHHHHHHHhcccc
Confidence 344455555677788888888888787777777776666554
No 87
>PTZ00370 STEVOR; Provisional
Probab=91.24 E-value=0.22 Score=41.91 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhheecc
Q 044133 357 LVAIILAMVAFLALIFGILIIRRRR 381 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (384)
+.+.|+.+++|+.++..+|.|+|||
T Consensus 259 iaalvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 259 IAALVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444444444444444444444
No 88
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=91.21 E-value=0.22 Score=41.78 Aligned_cols=25 Identities=28% Similarity=0.627 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhheecc
Q 044133 357 LVAIILAMVAFLALIFGILIIRRRR 381 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (384)
+.+.|+.+++|+.++..+|.|+|||
T Consensus 263 iaalvllil~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 263 IAALVLIILTVVLIILYIWLYRRRK 287 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3334444444444444444444444
No 89
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.56 E-value=0.051 Score=27.03 Aligned_cols=15 Identities=60% Similarity=0.751 Sum_probs=6.9
Q ss_pred CCCCEEeccCCcCcc
Q 044133 5 RNLVHLDLSNNHLTG 19 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~ 19 (384)
++|++|++++|++++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 455555555555543
No 90
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=90.08 E-value=0.069 Score=37.51 Aligned_cols=28 Identities=21% Similarity=0.109 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHH--HHHHhhheeccc
Q 044133 355 TRLVAIILAMVAFLAL--IFGILIIRRRRD 382 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 382 (384)
..++++++++++++.+ .+.+||+.+|||
T Consensus 66 gaiagi~vg~~~~v~~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 66 GAIAGISVAVVAVVGGLVGFLCWWFVCRGK 95 (96)
T ss_pred ccEEEEEeehhhHHHHHHHHHhheeEEeec
Confidence 3455555554444432 234444444444
No 91
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=90.01 E-value=0.38 Score=32.01 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhheecc
Q 044133 357 LVAIILAMVAFLALIFGILIIRRRR 381 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (384)
++++++++++++++++++++++||+
T Consensus 3 i~~~~~g~~~ll~~v~~~~~~~rr~ 27 (75)
T PF14575_consen 3 IASIIVGVLLLLVLVIIVIVCFRRC 27 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCTT-
T ss_pred EehHHHHHHHHHHhheeEEEEEeeE
Confidence 4445555555555555555555443
No 92
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.91 E-value=0.32 Score=24.63 Aligned_cols=19 Identities=53% Similarity=0.639 Sum_probs=10.0
Q ss_pred CCCCEEeccCCcCccCCCh
Q 044133 5 RNLVHLDLSNNHLTGHIPP 23 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~ 23 (384)
++|++|++++|+++...+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555566666655544333
No 93
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.91 E-value=0.32 Score=24.63 Aligned_cols=19 Identities=53% Similarity=0.639 Sum_probs=10.0
Q ss_pred CCCCEEeccCCcCccCCCh
Q 044133 5 RNLVHLDLSNNHLTGHIPP 23 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~ 23 (384)
++|++|++++|+++...+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 4555566666655544333
No 94
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=89.48 E-value=0.11 Score=32.72 Aligned_cols=17 Identities=12% Similarity=0.247 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHH
Q 044133 355 TRLVAIILAMVAFLALI 371 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~ 371 (384)
..+.+++++++.+++++
T Consensus 13 avIaG~Vvgll~ailLI 29 (64)
T PF01034_consen 13 AVIAGGVVGLLFAILLI 29 (64)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444433333
No 95
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=89.22 E-value=0.44 Score=38.27 Aligned_cols=26 Identities=19% Similarity=0.539 Sum_probs=12.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhe
Q 044133 353 IATRLVAIILAMVAFLALIFGILIIR 378 (384)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (384)
...+++++++|+++|+++++++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~vR 61 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLVR 61 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHHH
Confidence 34445555555555444444444433
No 96
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=87.25 E-value=0.91 Score=25.22 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHH-HHHHHHhhheecccC
Q 044133 357 LVAIILAMVAFL-ALIFGILIIRRRRDK 383 (384)
Q Consensus 357 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 383 (384)
.+++++++++.+ .+++.+++|-.++||
T Consensus 5 ~IaIIv~V~vg~~iiii~~~~YaCcykk 32 (38)
T PF02439_consen 5 TIAIIVAVVVGMAIIIICMFYYACCYKK 32 (38)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 344555555555 444555555567766
No 97
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=87.18 E-value=0.22 Score=39.91 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=29.6
Q ss_pred CCCCCCCCCCcccchhHHHHHHHHHHHHHHHHHHHhhheec
Q 044133 340 TTLANAPPPHHKTIATRLVAIILAMVAFLALIFGILIIRRR 380 (384)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (384)
......+.+........++++++++++||++++++++|+.+
T Consensus 26 ~d~~~~~~~d~~~I~iaiVAG~~tVILVI~i~v~vR~CRq~ 66 (221)
T PF08374_consen 26 GDPASSRSKDYVKIMIAIVAGIMTVILVIFIVVLVRYCRQS 66 (221)
T ss_pred CCCCccccccceeeeeeeecchhhhHHHHHHHHHHHHHhhc
Confidence 33444444556777777788888888888889999988743
No 98
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.08 E-value=0.015 Score=47.34 Aligned_cols=85 Identities=21% Similarity=0.312 Sum_probs=39.0
Q ss_pred hhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCC
Q 044133 25 LGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLR 104 (384)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 104 (384)
++.....+.||++.|++.. ....|+-+..|.+|+++.|.+. ..|.++.....++.++...|..+ ..|.+++..++++
T Consensus 38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 4444555555555554431 2223444445555555555543 33344444444444444444444 3344444445555
Q ss_pred EEEcCCCc
Q 044133 105 ILDLSQNK 112 (384)
Q Consensus 105 ~L~l~~~~ 112 (384)
++++..+.
T Consensus 115 ~~e~k~~~ 122 (326)
T KOG0473|consen 115 KNEQKKTE 122 (326)
T ss_pred hhhhccCc
Confidence 44444443
No 99
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=87.02 E-value=2.4 Score=28.14 Aligned_cols=27 Identities=19% Similarity=0.107 Sum_probs=16.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhe
Q 044133 352 TIATRLVAIILAMVAFLALIFGILIIR 378 (384)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (384)
-....++|++++-+++-.+++++.|++
T Consensus 31 ls~g~LaGiV~~D~vlTLLIv~~vy~c 57 (79)
T PF07213_consen 31 LSPGLLAGIVAADAVLTLLIVLVVYYC 57 (79)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455678888888665554444444443
No 100
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=86.82 E-value=0.69 Score=40.54 Aligned_cols=28 Identities=32% Similarity=0.530 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheecccC
Q 044133 356 RLVAIILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
+++.+++.+++|++.++++++.|.||+|
T Consensus 312 IiaSiIAIvvIVLIMvIIYLILRYRRKK 339 (353)
T TIGR01477 312 IIASIIAILIIVLIMVIIYLILRYRRKK 339 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3444444444444444444444444443
No 101
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=86.82 E-value=1.1 Score=26.94 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHhhheecc
Q 044133 364 MVAFLALIFGILIIRRRR 381 (384)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~ 381 (384)
++.+++.+++++|.+|+|
T Consensus 16 v~~~~~F~gi~~w~~~~~ 33 (49)
T PF05545_consen 16 VLFFVFFIGIVIWAYRPR 33 (49)
T ss_pred HHHHHHHHHHHHHHHccc
Confidence 344444444444444444
No 102
>PTZ00046 rifin; Provisional
Probab=86.66 E-value=0.71 Score=40.60 Aligned_cols=28 Identities=32% Similarity=0.509 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheecccC
Q 044133 356 RLVAIILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
+++.+++.+++|++.++++++.|.||+|
T Consensus 317 IiaSiiAIvVIVLIMvIIYLILRYRRKK 344 (358)
T PTZ00046 317 IIASIVAIVVIVLIMVIIYLILRYRRKK 344 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3444444444444444444444444443
No 103
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.58 E-value=0.026 Score=46.05 Aligned_cols=61 Identities=13% Similarity=0.134 Sum_probs=33.1
Q ss_pred CCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccc
Q 044133 252 CSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLS 314 (384)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 314 (384)
++.+..|+++.|.+. ..|..+.....+.+++..+|... ..|..+.+.+.+++++.-++++.
T Consensus 64 ~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 64 LTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred HHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhhccCcch
Confidence 344555555555554 44445555555555555555554 44555555666666666555543
No 104
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=82.71 E-value=1.1 Score=39.62 Aligned_cols=35 Identities=17% Similarity=0.435 Sum_probs=21.6
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHhhheeccc
Q 044133 348 PHHKTIATRLVAIILAMVAFLALIFGILIIRRRRD 382 (384)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (384)
+++.....+++++++++++++++.++|+++.||||
T Consensus 380 ~~~~~~~~i~~avl~p~~il~~~~~~~~~~v~rrr 414 (436)
T PTZ00208 380 SRHQRTAMIILAVLVPAIILAIIAVAFFIMVKRRR 414 (436)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHhheeeeecc
Confidence 35555556666677766666656665666666655
No 105
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=80.90 E-value=1.9 Score=27.61 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheecccC
Q 044133 354 ATRLVAIILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
.+..++++.++++.++-.+.=+|+++|+.|
T Consensus 32 qW~aIGvi~gi~~~~lt~ltN~YFK~k~dr 61 (68)
T PF04971_consen 32 QWAAIGVIGGIFFGLLTYLTNLYFKIKEDR 61 (68)
T ss_pred cchhHHHHHHHHHHHHHHHhHhhhhhhHhh
Confidence 355666666666666655666666665444
No 106
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=80.24 E-value=2.4 Score=37.34 Aligned_cols=7 Identities=43% Similarity=0.691 Sum_probs=2.8
Q ss_pred EcccCcC
Q 044133 328 DVSGNKF 334 (384)
Q Consensus 328 ~l~~~~~ 334 (384)
++.++.+
T Consensus 252 ~~~~~~F 258 (306)
T PF01299_consen 252 RVKNNTF 258 (306)
T ss_pred EecCCCC
Confidence 3344444
No 107
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=79.58 E-value=0.86 Score=41.59 Aligned_cols=32 Identities=16% Similarity=0.085 Sum_probs=19.6
Q ss_pred cchhHHHHHHHHHHHHH--HHHHHHhhheecccC
Q 044133 352 TIATRLVAIILAMVAFL--ALIFGILIIRRRRDK 383 (384)
Q Consensus 352 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 383 (384)
.+...|++|.|++|+|| ++.|..||+..|+|+
T Consensus 364 LstgaIaGIsvavvvvVgglvGfLcWwf~crgka 397 (397)
T PF03302_consen 364 LSTGAIAGISVAVVVVVGGLVGFLCWWFICRGKA 397 (397)
T ss_pred ccccceeeeeehhHHHHHHHHHHHhhheeecccC
Confidence 34456666666666555 555666676667663
No 108
>PF15102 TMEM154: TMEM154 protein family
Probab=79.34 E-value=0.72 Score=34.71 Aligned_cols=28 Identities=14% Similarity=0.324 Sum_probs=21.0
Q ss_pred HHHHHHH-HHHHHHHHHHHhhheecccCC
Q 044133 357 LVAIILA-MVAFLALIFGILIIRRRRDKE 384 (384)
Q Consensus 357 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 384 (384)
++.++|+ ++++++++++++.+.+.||||
T Consensus 58 iLmIlIP~VLLvlLLl~vV~lv~~~kRkr 86 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVVCLVIYYKRKR 86 (146)
T ss_pred EEEEeHHHHHHHHHHHHHHHheeEEeecc
Confidence 5555555 777778888888888888886
No 109
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=78.40 E-value=0.67 Score=38.81 Aligned_cols=24 Identities=29% Similarity=0.570 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHhhheecccC
Q 044133 360 IILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
.|-.|++|+++|.+..||+||||.
T Consensus 231 LVPSiILVLLaVGGLLfYr~rrRs 254 (285)
T PF05337_consen 231 LVPSIILVLLAVGGLLFYRRRRRS 254 (285)
T ss_dssp ------------------------
T ss_pred cccchhhhhhhccceeeecccccc
Confidence 444567777788888888887764
No 110
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=78.16 E-value=3.3 Score=22.41 Aligned_cols=9 Identities=44% Similarity=0.981 Sum_probs=3.4
Q ss_pred HHhhheecc
Q 044133 373 GILIIRRRR 381 (384)
Q Consensus 373 ~~~~~~~~~ 381 (384)
+.++++|||
T Consensus 24 ~~~~~~~rk 32 (34)
T TIGR01167 24 GGLLLRKRK 32 (34)
T ss_pred HHHHheecc
Confidence 333334433
No 111
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.08 E-value=1.5 Score=40.81 Aligned_cols=40 Identities=33% Similarity=0.299 Sum_probs=19.2
Q ss_pred CCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCC
Q 044133 218 GHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNN 263 (384)
Q Consensus 218 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 263 (384)
.+.+.+..+++++|.+..++.. + ......|.|+.|+|++|
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~--s----slsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDAL--S----SLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cCCcceeeeecccchhhchhhh--h----HHHHhcchhheeecccc
Confidence 3445555666666665544321 1 11222455555555555
No 112
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=77.05 E-value=1.9 Score=36.41 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhheecccCC
Q 044133 358 VAIILAMVAFLALIFGILIIRRRRDKE 384 (384)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (384)
.|+.+.+++++++++++.|.|-+||||
T Consensus 261 cgiaalvllil~vvliiLYiWlyrrRK 287 (295)
T TIGR01478 261 YGIAALVLIILTVVLIILYIWLYRRRK 287 (295)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456666666667777777777788875
No 113
>PTZ00370 STEVOR; Provisional
Probab=76.39 E-value=2 Score=36.32 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhhheecccCC
Q 044133 358 VAIILAMVAFLALIFGILIIRRRRDKE 384 (384)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (384)
.|+.+.+++++++++++.|.|-+|||+
T Consensus 257 ygiaalvllil~vvliilYiwlyrrRK 283 (296)
T PTZ00370 257 YGIAALVLLILAVVLIILYIWLYRRRK 283 (296)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456666666667777777777788875
No 114
>PF05808 Podoplanin: Podoplanin; InterPro: IPR008783 This family consists of several mammalian podoplanin-like proteins which are thought to control specifically the unique shape of podocytes [].; GO: 0016021 integral to membrane; PDB: 3IET_X.
Probab=76.31 E-value=0.83 Score=34.97 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=0.0
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHhhheeccc
Q 044133 349 HHKTIATRLVAIILAMVAFLALIFGILIIRRRRD 382 (384)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (384)
........+++|++++++.+.++++++++..||.
T Consensus 123 k~GL~T~tLVGIIVGVLlaIG~igGIIivvvRKm 156 (162)
T PF05808_consen 123 KDGLSTVTLVGIIVGVLLAIGFIGGIIIVVVRKM 156 (162)
T ss_dssp ----------------------------------
T ss_pred cCCcceeeeeeehhhHHHHHHHHhheeeEEeehh
Confidence 3344556888999999998888888887777664
No 115
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=76.06 E-value=3 Score=37.08 Aligned_cols=33 Identities=24% Similarity=0.415 Sum_probs=20.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhheecccCC
Q 044133 352 TIATRLVAIILAMVAFLALIFGILIIRRRRDKE 384 (384)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (384)
...+.++++..|+-++++++.+++++.||+|+|
T Consensus 317 ~lvi~i~~vgLG~P~l~li~Ggl~v~~~r~r~~ 349 (350)
T PF15065_consen 317 PLVIMIMAVGLGVPLLLLILGGLYVCLRRRRKR 349 (350)
T ss_pred HHHHHHHHHHhhHHHHHHHHhhheEEEeccccC
Confidence 344455555556666666777777766665553
No 116
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=75.75 E-value=1 Score=31.69 Aligned_cols=15 Identities=7% Similarity=-0.166 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhhhee
Q 044133 365 VAFLALIFGILIIRR 379 (384)
Q Consensus 365 ~~~~~~~~~~~~~~~ 379 (384)
+++.++...+++.+|
T Consensus 81 ~lv~~l~w~f~~r~k 95 (96)
T PTZ00382 81 GLVGFLCWWFVCRGK 95 (96)
T ss_pred HHHHHHhheeEEeec
Confidence 344444444444443
No 117
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=75.73 E-value=2.9 Score=33.76 Aligned_cols=18 Identities=22% Similarity=0.218 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhhheecc
Q 044133 364 MVAFLALIFGILIIRRRR 381 (384)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~ 381 (384)
++++++.+++++++.||.
T Consensus 112 lLla~~~~~~Y~~~~Rrs 129 (202)
T PF06365_consen 112 LLLAILLGAGYCCHQRRS 129 (202)
T ss_pred HHHHHHHHHHHHhhhhcc
Confidence 444444444455555543
No 118
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=75.58 E-value=1.3 Score=22.41 Aligned_cols=12 Identities=50% Similarity=0.481 Sum_probs=6.9
Q ss_pred CCCCCEEeccCC
Q 044133 4 LRNLVHLDLSNN 15 (384)
Q Consensus 4 ~~~L~~L~l~~~ 15 (384)
+++|++|++++|
T Consensus 1 c~~L~~L~l~~C 12 (26)
T smart00367 1 CPNLRELDLSGC 12 (26)
T ss_pred CCCCCEeCCCCC
Confidence 355666666655
No 119
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=74.69 E-value=3.5 Score=35.40 Aligned_cols=6 Identities=33% Similarity=0.346 Sum_probs=2.2
Q ss_pred hheecc
Q 044133 376 IIRRRR 381 (384)
Q Consensus 376 ~~~~~~ 381 (384)
||+-+|
T Consensus 221 W~Rlqr 226 (341)
T PF06809_consen 221 WYRLQR 226 (341)
T ss_pred EEEecc
Confidence 333333
No 120
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=74.35 E-value=2.5 Score=47.37 Aligned_cols=33 Identities=30% Similarity=0.312 Sum_probs=19.7
Q ss_pred EccCCcccCCCCchhcCCccccEEecCCCcCCC
Q 044133 259 ILGNNLLSGSIPSQIGKLQKLCYLDLSGNSING 291 (384)
Q Consensus 259 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 291 (384)
+|++|+|+...+..|..+++|++|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 355666665555556666666666666666553
No 121
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=74.33 E-value=1.5 Score=40.86 Aligned_cols=37 Identities=32% Similarity=0.312 Sum_probs=21.3
Q ss_pred CCCCCCEEEccCCcccccC--CccCCCCCCCCeeecCCC
Q 044133 195 HLNRLTDLDLSENKLVGPI--PSSVGHLNFLQDLDLSNN 231 (384)
Q Consensus 195 ~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~n 231 (384)
+.+.+..+.+++|++.... ..--...|+|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 4566667777777654321 112234567777777777
No 122
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=73.95 E-value=1.1 Score=36.12 Aligned_cols=27 Identities=22% Similarity=0.202 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhheecccC
Q 044133 357 LVAIILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
.+++++.+++++++++++.++.++|++
T Consensus 159 ~laI~lPvvv~~~~~~~~~~~~~~R~~ 185 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIMYGFFFWNRKK 185 (189)
T ss_pred eEEEEccHHHHHHHHHHHhhheeeccc
Confidence 344445555555555555555544443
No 123
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=73.54 E-value=1.4 Score=22.78 Aligned_cols=15 Identities=53% Similarity=0.634 Sum_probs=9.2
Q ss_pred CCCCEEeccCCcCcc
Q 044133 5 RNLVHLDLSNNHLTG 19 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~ 19 (384)
++|++|++++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 456666666666653
No 124
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=72.70 E-value=1.8 Score=34.58 Aligned_cols=20 Identities=25% Similarity=0.434 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 044133 356 RLVAIILAMVAFLALIFGIL 375 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~ 375 (384)
+++++++++++++++++++.
T Consensus 80 iivgvi~~Vi~Iv~~Iv~~~ 99 (179)
T PF13908_consen 80 IIVGVICGVIAIVVLIVCFC 99 (179)
T ss_pred eeeehhhHHHHHHHhHhhhe
Confidence 33444444444433333333
No 125
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=71.75 E-value=0.76 Score=32.61 Aligned_cols=17 Identities=24% Similarity=0.448 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhheec
Q 044133 364 MVAFLALIFGILIIRRR 380 (384)
Q Consensus 364 ~~~~~~~~~~~~~~~~~ 380 (384)
++++++++++.|+|+||
T Consensus 34 VILgiLLliGCWYckRR 50 (118)
T PF14991_consen 34 VILGILLLIGCWYCKRR 50 (118)
T ss_dssp -----------------
T ss_pred HHHHHHHHHhheeeeec
Confidence 34444556666666665
No 126
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=69.88 E-value=7.8 Score=27.07 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=10.5
Q ss_pred ccchhHHHHHHHHHHHHHHHHH
Q 044133 351 KTIATRLVAIILAMVAFLALIF 372 (384)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~ 372 (384)
......++|++++++..-++++
T Consensus 14 g~sW~~LVGVv~~al~~SlLIa 35 (102)
T PF15176_consen 14 GRSWPFLVGVVVTALVTSLLIA 35 (102)
T ss_pred CcccHhHHHHHHHHHHHHHHHH
Confidence 4445555555555444433333
No 127
>PF02529 PetG: Cytochrome B6-F complex subunit 5; InterPro: IPR003683 This family consists of cytochrome b6/f complex subunit 5 (PetG). The cytochrome bf complex, found in green plants, eukaryotic algae and cyanobacteria, connects photosystem I to photosystem II in the electron transport chain, functioning as a plastoquinol:plastocyanin/cytochrome c6 oxidoreductase []. The purified complex from the unicellular alga Chlamydomonas reinhardtii contains seven subunits; namely four high molecular weight subunits (cytochrome f, Rieske iron-sulphur protein, cytochrome b6, and subunit IV) and three approximately miniproteins (PetG, PetL, and PetX) []. Stoichiometry measurements are consistent with every subunit being present as two copies per b6/f dimer. The absence of PetG affects either the assembly or stability of the cytochrome bf complex in C. reinhardtii [].; GO: 0009512 cytochrome b6f complex; PDB: 1Q90_G 2ZT9_G 1VF5_G 2D2C_G 2E74_G 2E75_G 2E76_G.
Probab=69.87 E-value=10 Score=20.87 Aligned_cols=22 Identities=14% Similarity=0.126 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 044133 356 RLVAIILAMVAFLALIFGILII 377 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~ 377 (384)
.+.+++.+.+-+..+...+..|
T Consensus 5 lL~GiVlGli~vtl~Glfv~Ay 26 (37)
T PF02529_consen 5 LLSGIVLGLIPVTLAGLFVAAY 26 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHhHHHHHHHHHHHHH
Confidence 3556666655555444444443
No 128
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=69.67 E-value=5.6 Score=27.15 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheecccC
Q 044133 355 TRLVAIILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
..+.++++++.+++++++++-+|..|+++
T Consensus 52 i~iS~ias~la~lv~t~~G~g~y~~~kk~ 80 (85)
T TIGR01495 52 ILYSSIASGLALLVGAGVGLGYYYKKKNK 80 (85)
T ss_pred eehHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 34445555555555566666665555543
No 129
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.80 E-value=4.9 Score=20.43 Aligned_cols=14 Identities=29% Similarity=0.544 Sum_probs=10.0
Q ss_pred CCCcEEeCCCCccc
Q 044133 301 PGIHTVDLSMNNLS 314 (384)
Q Consensus 301 ~~L~~L~l~~n~~~ 314 (384)
.+|+.|++++|.++
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46777777777765
No 130
>TIGR03867 MprA_tail MprA protease C-terminal sorting domain. This model describes a protein C-terminal domain that occurs in species of the genus Ralstonia and is predicted to play a role in protein targeting. This sequence, though limited to members of the MprA serine in species distribution, resembles C-terminal sorting sequences of the sortase and exosortase systems, as well as a Shewanella-type C-terminal sequence modeled by TIGR03501. For all such cases, member proteins have homologs in other species with essentially full-length homology, save for the lack of the domain modeled here. All members of the present family are predicted serine proteases
Probab=67.94 E-value=6.8 Score=19.91 Aligned_cols=20 Identities=40% Similarity=0.468 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhhheeccc
Q 044133 363 AMVAFLALIFGILIIRRRRD 382 (384)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~ 382 (384)
...+++.++++..-+.|||+
T Consensus 8 ~~~A~Lll~aG~~~~~rR~r 27 (27)
T TIGR03867 8 PWLAALLLAAGLLGFARRRR 27 (27)
T ss_pred HHHHHHHHHHHhhhHHhhcC
Confidence 45566666666666666653
No 131
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=67.91 E-value=3.2 Score=34.20 Aligned_cols=10 Identities=10% Similarity=-0.097 Sum_probs=4.5
Q ss_pred HHHHHhhhee
Q 044133 370 LIFGILIIRR 379 (384)
Q Consensus 370 ~~~~~~~~~~ 379 (384)
++++++||++
T Consensus 172 ~gGGa~yYfK 181 (218)
T PF14283_consen 172 IGGGAYYYFK 181 (218)
T ss_pred hhcceEEEEE
Confidence 3334445444
No 132
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=67.51 E-value=30 Score=32.06 Aligned_cols=37 Identities=19% Similarity=0.091 Sum_probs=18.4
Q ss_pred CCCCcEEEccCCcccCCC----CchhcCCccccEEecCCCc
Q 044133 252 CSKLTTLILGNNLLSGSI----PSQIGKLQKLCYLDLSGNS 288 (384)
Q Consensus 252 ~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~n~ 288 (384)
-+.+..|++++|...... +.+......++....+.|.
T Consensus 439 tqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 439 TQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred CcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 356667777777665432 2333333344444444443
No 133
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=67.26 E-value=10 Score=30.90 Aligned_cols=25 Identities=8% Similarity=0.230 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhheecc
Q 044133 357 LVAIILAMVAFLALIFGILIIRRRR 381 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (384)
++++++++.+.++++++++.+||++
T Consensus 193 vvIaliVitl~vf~LvgLyr~C~k~ 217 (259)
T PF07010_consen 193 VVIALIVITLSVFTLVGLYRMCWKT 217 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 3333444444555556666655554
No 134
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=66.44 E-value=10 Score=25.90 Aligned_cols=29 Identities=14% Similarity=0.282 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheecccC
Q 044133 355 TRLVAIILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
..+.++..+++++++.++++-+|..|+++
T Consensus 56 iiiS~i~s~lalli~~~~G~g~y~~~k~k 84 (84)
T PF09716_consen 56 IIISTIASGLALLIATALGYGYYKKKKKK 84 (84)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 34455555566666777777777766653
No 135
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=66.40 E-value=8.7 Score=30.18 Aligned_cols=27 Identities=15% Similarity=0.383 Sum_probs=12.8
Q ss_pred hHHHHHHHH-HHHHHHHHHHHhhheecc
Q 044133 355 TRLVAIILA-MVAFLALIFGILIIRRRR 381 (384)
Q Consensus 355 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 381 (384)
.+|.+||.+ +++++-++..++.|.+||
T Consensus 115 g~IaGIvsav~valvGAvsSyiaYqkKK 142 (169)
T PF12301_consen 115 GTIAGIVSAVVVALVGAVSSYIAYQKKK 142 (169)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444444433 333444455555555554
No 136
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=66.29 E-value=9.5 Score=27.97 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheeccc
Q 044133 355 TRLVAIILAMVAFLALIFGILIIRRRRD 382 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (384)
..++++.++++++.++..++.|++|||.
T Consensus 104 ~~il~il~~i~is~~~~~~yr~~r~~~~ 131 (139)
T PHA03099 104 PGIVLVLVGIIITCCLLSVYRFTRRTKL 131 (139)
T ss_pred hHHHHHHHHHHHHHHHHhhheeeecccC
Confidence 3556777778888899999999999874
No 137
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=66.15 E-value=79 Score=29.52 Aligned_cols=38 Identities=29% Similarity=0.382 Sum_probs=18.3
Q ss_pred CCccccEEecCCCcCCCC----CchhhcCCCCCcEEeCCCCc
Q 044133 275 KLQKLCYLDLSGNSINGK----IPYQLGAIPGIHTVDLSMNN 312 (384)
Q Consensus 275 ~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~ 312 (384)
.-+.+.+|++++|..... +|..+.....++.+..+.|.
T Consensus 438 stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~ 479 (553)
T KOG4242|consen 438 STQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNL 479 (553)
T ss_pred cCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCC
Confidence 345566666666644322 33344444444444444443
No 138
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=65.28 E-value=4 Score=27.94 Aligned_cols=18 Identities=11% Similarity=0.385 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHhhheecc
Q 044133 363 AMVAFLALIFGILIIRRRR 381 (384)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~ 381 (384)
++++++++ +++++++|.|
T Consensus 50 G~iLilIi-i~Lv~CC~~K 67 (98)
T PF07204_consen 50 GLILILII-IALVCCCRAK 67 (98)
T ss_pred hhhhHHHH-HHHHHHhhhh
Confidence 44444444 4444444433
No 139
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=63.63 E-value=2.5 Score=26.76 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 044133 355 TRLVAIILAMVAFLALIFGIL 375 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~ 375 (384)
.+++++++++++.+++++.++
T Consensus 9 ~vlaavIaG~Vvgll~ailLI 29 (64)
T PF01034_consen 9 EVLAAVIAGGVVGLLFAILLI 29 (64)
T ss_dssp ---------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 345666666555554444443
No 140
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.49 E-value=5.5 Score=20.22 Aligned_cols=15 Identities=47% Similarity=0.736 Sum_probs=8.8
Q ss_pred CCCeeecCCCCCCCC
Q 044133 222 FLQDLDLSNNKLEDL 236 (384)
Q Consensus 222 ~L~~L~l~~n~~~~~ 236 (384)
+|+.|++++|+++.+
T Consensus 3 ~L~~L~vs~N~Lt~L 17 (26)
T smart00364 3 SLKELNVSNNQLTSL 17 (26)
T ss_pred ccceeecCCCccccC
Confidence 455666666665554
No 141
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=62.83 E-value=2.4 Score=36.45 Aligned_cols=31 Identities=26% Similarity=0.184 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheecccCC
Q 044133 354 ATRLVAIILAMVAFLALIFGILIIRRRRDKE 384 (384)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (384)
......+.++++++++++++++++++.||||
T Consensus 144 ~yL~T~IpaVVI~~iLLIA~iIa~icyrrkR 174 (290)
T PF05454_consen 144 DYLHTFIPAVVIAAILLIAGIIACICYRRKR 174 (290)
T ss_dssp -------------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 4555666666777778888899999999886
No 142
>PHA03283 envelope glycoprotein E; Provisional
Probab=62.82 E-value=18 Score=33.69 Aligned_cols=24 Identities=13% Similarity=0.040 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhee
Q 044133 356 RLVAIILAMVAFLALIFGILIIRR 379 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~ 379 (384)
.+++++.+.++++++++++|.|.|
T Consensus 401 ~~~~~~~~~~~~~~~~l~vw~c~~ 424 (542)
T PHA03283 401 AFLLAIICTCAALLVALVVWGCIL 424 (542)
T ss_pred hhHHHHHHHHHHHHHHHhhhheee
Confidence 344444444444455555555544
No 143
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=62.73 E-value=5 Score=27.47 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHhhheecc
Q 044133 361 ILAMVAFLALIFGILIIRRRR 381 (384)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~ 381 (384)
+.++++++++++++.+|+-++
T Consensus 7 v~~~~~v~~~i~~y~~~k~~k 27 (87)
T PF10883_consen 7 VGGVGAVVALILAYLWWKVKK 27 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555443
No 144
>PF14654 Epiglycanin_C: Mucin, catalytic, TM and cytoplasmic tail region
Probab=62.00 E-value=21 Score=24.73 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheec
Q 044133 355 TRLVAIILAMVAFLALIFGILIIRRR 380 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (384)
-++++-++.+++++-+.+++++|.|+
T Consensus 19 eIfLItLasVvvavGl~aGLfFcvR~ 44 (106)
T PF14654_consen 19 EIFLITLASVVVAVGLFAGLFFCVRN 44 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444555566666666677777664
No 145
>PRK06287 cobalt transport protein CbiN; Validated
Probab=59.84 E-value=15 Score=26.39 Aligned_cols=30 Identities=20% Similarity=0.481 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheecccC
Q 044133 354 ATRLVAIILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
...++..+++++++++++.++.+..+||+.
T Consensus 77 ~g~ilsgiiGv~i~l~l~~~~~~~l~r~~~ 106 (107)
T PRK06287 77 IGEIIAMVIGTLLVLALAYGVGKIFKKKSS 106 (107)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 345555666666666665555555555543
No 146
>cd01324 cbb3_Oxidase_CcoQ Cytochrome cbb oxidase CcoQ. Cytochrome cbb3 oxidase, the terminal oxidase in the respiratory chains of proteobacteria, is a multi-chain transmembrane protein located in the cell membrane. Like other cytochrome oxidases, it catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. Found exclusively in proteobacteria, cbb3 is believed to be a modern enzyme that has evolved independently to perform a specialized function in microaerobic energy metabolism. The cbb3 operon contains four genes (ccoNOQP or fixNOQP), with ccoN coding for subunit I. Instead of a CuA-containing subunit II analogous to other cytochrome oxidases, cbb3 utilizes subunits ccoO and ccoP, which contain one and two hemes, respectively, to transfer electrons to the binuclear center. ccoQ, the fourth subunit, is a single transmembrane helix protein. It has been shown to protect the core complex from proteolytic degradation by serine proteases. See cd00919, cd01322
Probab=58.63 E-value=19 Score=21.49 Aligned_cols=14 Identities=21% Similarity=0.112 Sum_probs=5.6
Q ss_pred HHHHHHhhheeccc
Q 044133 369 ALIFGILIIRRRRD 382 (384)
Q Consensus 369 ~~~~~~~~~~~~~~ 382 (384)
++++.++.++.++|
T Consensus 23 Figiv~wa~~p~~k 36 (48)
T cd01324 23 FLGVVVWAFRPGRK 36 (48)
T ss_pred HHHHHHHHhCCCcc
Confidence 33333344443443
No 147
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=58.51 E-value=3.2 Score=38.35 Aligned_cols=28 Identities=18% Similarity=0.276 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheeccc
Q 044133 355 TRLVAIILAMVAFLALIFGILIIRRRRD 382 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (384)
..++++++++++++++++.+..++||||
T Consensus 355 l~vVlgvavlivVv~viv~vc~~~rrrR 382 (439)
T PF02480_consen 355 LGVVLGVAVLIVVVGVIVWVCLRCRRRR 382 (439)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHHHHHhheeeeehhcc
Confidence 3444444444444444444444444443
No 148
>CHL00008 petG cytochrome b6/f complex subunit V
Probab=58.01 E-value=17 Score=19.90 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044133 357 LVAIILAMVAFLALIFGI 374 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~ 374 (384)
+.++|.+.+-+..+...+
T Consensus 6 L~GiVLGlipvTl~Glfv 23 (37)
T CHL00008 6 LFGIVLGLIPITLAGLFV 23 (37)
T ss_pred hhhHHHHhHHHHHHHHHH
Confidence 445555544444443333
No 149
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=57.75 E-value=9 Score=33.34 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhheecccC
Q 044133 364 MVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~ 383 (384)
++++++++..++|+..|.||
T Consensus 264 aIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 264 AILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444455555555665
No 150
>PHA03164 hypothetical protein; Provisional
Probab=57.64 E-value=15 Score=24.00 Aligned_cols=15 Identities=27% Similarity=0.598 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHHH
Q 044133 356 RLVAIILAMVAFLAL 370 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~ 370 (384)
++.+.++++++.+++
T Consensus 62 vLtgLaIamILfiif 76 (88)
T PHA03164 62 VLTGLAIAMILFIIF 76 (88)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 151
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=56.71 E-value=34 Score=26.76 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHhhheec
Q 044133 360 IILAMVAFLALIFGILIIRRR 380 (384)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~ 380 (384)
+++++.+++++.+++.+++-|
T Consensus 100 Vl~g~s~l~i~yfvir~~R~r 120 (163)
T PF06679_consen 100 VLVGLSALAILYFVIRTFRLR 120 (163)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 333444444444444544433
No 152
>PHA03265 envelope glycoprotein D; Provisional
Probab=56.56 E-value=5.8 Score=34.63 Aligned_cols=21 Identities=14% Similarity=0.150 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHhhhee
Q 044133 359 AIILAMVAFLALIFGILIIRR 379 (384)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ 379 (384)
+.++++++|-+++...|-.++
T Consensus 356 ~~i~glv~vg~il~~~~rr~k 376 (402)
T PHA03265 356 LGIAGLVLVGVILYVCLRRKK 376 (402)
T ss_pred cchhhhhhhhHHHHHHhhhhh
Confidence 334444444455555555554
No 153
>PRK00665 petG cytochrome b6-f complex subunit PetG; Reviewed
Probab=55.77 E-value=20 Score=19.62 Aligned_cols=17 Identities=18% Similarity=0.217 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044133 357 LVAIILAMVAFLALIFG 373 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~~~ 373 (384)
+.++|.+.+-+..+...
T Consensus 6 L~GiVLGlipiTl~Glf 22 (37)
T PRK00665 6 LCGIVLGLIPVTLAGLF 22 (37)
T ss_pred hhhHHHHhHHHHHHHHH
Confidence 44555554444433333
No 154
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=54.95 E-value=12 Score=42.50 Aligned_cols=36 Identities=22% Similarity=0.177 Sum_probs=22.4
Q ss_pred ecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccC
Q 044133 283 DLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP 318 (384)
Q Consensus 283 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 318 (384)
||++|+|....+..|..+++|+.|+|++|++.|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 456666665555566666666666666666666543
No 155
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=54.27 E-value=12 Score=32.40 Aligned_cols=26 Identities=46% Similarity=0.465 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHhhheecccC
Q 044133 358 VAIILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
+++.++++++++++.+++.+.|||++
T Consensus 234 lAiALG~v~ll~l~Gii~~~~~r~~~ 259 (281)
T PF12768_consen 234 LAIALGTVFLLVLIGIILAYIRRRRQ 259 (281)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 44555555555555555555555543
No 156
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=54.22 E-value=7.5 Score=23.86 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhheecc
Q 044133 357 LVAIILAMVAFLALIFGILIIRRRR 381 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (384)
+..+++..++++++++++++|..-|
T Consensus 30 v~tVVlP~l~~~~~~Ivv~vy~kTR 54 (56)
T PF15012_consen 30 VFTVVLPTLAAVFLFIVVFVYLKTR 54 (56)
T ss_pred heeEehhHHHHHHHHHhheeEEecc
Confidence 4445667777777777777666544
No 157
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=53.94 E-value=9.9 Score=30.78 Aligned_cols=30 Identities=13% Similarity=0.008 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheecccC
Q 044133 354 ATRLVAIILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
..++|++|+...+++++++++..|+.+.|+
T Consensus 99 ~~~lI~lv~~g~~lLla~~~~~~Y~~~~Rr 128 (202)
T PF06365_consen 99 YPTLIALVTSGSFLLLAILLGAGYCCHQRR 128 (202)
T ss_pred ceEEEehHHhhHHHHHHHHHHHHHHhhhhc
Confidence 346777777777899999999999999886
No 158
>TIGR02595 PEP_exosort PEP-CTERM putative exosortase interaction domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms.
Probab=53.14 E-value=19 Score=18.23 Aligned_cols=9 Identities=67% Similarity=1.331 Sum_probs=3.9
Q ss_pred HHhhheecc
Q 044133 373 GILIIRRRR 381 (384)
Q Consensus 373 ~~~~~~~~~ 381 (384)
+++..+|||
T Consensus 15 ~~~~~rrrk 23 (26)
T TIGR02595 15 GFLLLRRRR 23 (26)
T ss_pred HHHHHhhcc
Confidence 444444444
No 159
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=52.72 E-value=19 Score=22.66 Aligned_cols=17 Identities=24% Similarity=0.067 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhheeccc
Q 044133 366 AFLALIFGILIIRRRRD 382 (384)
Q Consensus 366 ~~~~~~~~~~~~~~~~~ 382 (384)
..++.++++++.+|+++
T Consensus 18 ~~l~fiavi~~ayr~~~ 34 (60)
T COG4736 18 FTLFFIAVIYFAYRPGK 34 (60)
T ss_pred HHHHHHHHHHHHhcccc
Confidence 33344444444444433
No 160
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=52.57 E-value=38 Score=22.63 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=16.9
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHhhheecccC
Q 044133 349 HHKTIATRLVAIILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
.......++.+=++..++++.++....-.+||+++
T Consensus 32 s~g~LaGiV~~D~vlTLLIv~~vy~car~r~r~~~ 66 (79)
T PF07213_consen 32 SPGLLAGIVAADAVLTLLIVLVVYYCARPRRRPTQ 66 (79)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCcc
Confidence 33444455555444444444444444445555444
No 161
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=51.80 E-value=6.2 Score=33.61 Aligned_cols=31 Identities=13% Similarity=0.186 Sum_probs=13.2
Q ss_pred CcccchhH-HHHHHHHHHHHHHHHHHHhhhee
Q 044133 349 HHKTIATR-LVAIILAMVAFLALIFGILIIRR 379 (384)
Q Consensus 349 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 379 (384)
+.+...+. +++++.|+++++++.+.+++..|
T Consensus 207 ~~~~~~W~iv~g~~~G~~~L~ll~~lv~~~vr 238 (278)
T PF06697_consen 207 RKRSWWWKIVVGVVGGVVLLGLLSLLVAMLVR 238 (278)
T ss_pred CCcceeEEEEEEehHHHHHHHHHHHHHHhhhh
Confidence 34444444 33334444444444334444333
No 162
>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]
Probab=50.97 E-value=11 Score=35.91 Aligned_cols=42 Identities=21% Similarity=0.384 Sum_probs=17.4
Q ss_pred CCCCCCCCCCCCCc-ccchhHHHHHHHHHHHHHHHHHHHhhhe
Q 044133 337 EIPTTLANAPPPHH-KTIATRLVAIILAMVAFLALIFGILIIR 378 (384)
Q Consensus 337 ~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (384)
..|.+.+..+.-.. .+...+++++++++.+++++++.+..|+
T Consensus 372 ~~P~s~~~~~v~~~~~~~t~~~~~~f~~if~iva~ii~~~L~R 414 (807)
T KOG1094|consen 372 TFPESRGYQPVLKVDGSPTAILIIIFVAIFLIVALIIALMLWR 414 (807)
T ss_pred CCCCccccceeEEEcCCCceehHHHHHHHHHHHHHHHHHHHHH
Confidence 44544443333222 2233344444444444444444444444
No 163
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=50.00 E-value=35 Score=20.74 Aligned_cols=16 Identities=6% Similarity=-0.106 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHhhhee
Q 044133 364 MVAFLALIFGILIIRR 379 (384)
Q Consensus 364 ~~~~~~~~~~~~~~~~ 379 (384)
++++++++++++|..|
T Consensus 12 l~l~~~~l~~f~Wavk 27 (51)
T TIGR00847 12 LLLGGVGLVAFLWSLK 27 (51)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3334444444444433
No 164
>PF06596 PsbX: Photosystem II reaction centre X protein (PsbX); InterPro: IPR009518 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. The low molecular weight transmembrane protein PsbX found in PSII is associated with the oxygen-evolving complex. Its expression is light-regulated. PsbX appears to be involved in the regulation of the amount of PSII [], and may be involved in the binding or turnover of quinone molecules at the Qb (PsbA) site [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0016020 membrane; PDB: 3ARC_x 3A0H_X 3A0B_X 3PRR_X 1S5L_x 4FBY_j 3PRQ_X 3KZI_X 3BZ2_X 3BZ1_X.
Probab=49.84 E-value=33 Score=19.39 Aligned_cols=22 Identities=5% Similarity=0.329 Sum_probs=9.4
Q ss_pred HHHHHHHHH-HHHHHHHHHHhhh
Q 044133 356 RLVAIILAM-VAFLALIFGILII 377 (384)
Q Consensus 356 ~~~~~~~~~-~~~~~~~~~~~~~ 377 (384)
.+..++.+. ++++.+.+++++.
T Consensus 8 fl~Sl~aG~~iVv~~i~~ali~V 30 (39)
T PF06596_consen 8 FLLSLVAGAVIVVIPIAGALIFV 30 (39)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhhhhheEEE
Confidence 444455555 3333333333333
No 165
>PHA02844 putative transmembrane protein; Provisional
Probab=49.20 E-value=56 Score=21.46 Aligned_cols=13 Identities=15% Similarity=0.319 Sum_probs=5.0
Q ss_pred HHHHHHHHHHhhh
Q 044133 365 VAFLALIFGILII 377 (384)
Q Consensus 365 ~~~~~~~~~~~~~ 377 (384)
.+++++++.+.|.
T Consensus 57 ~v~~~~~~~flYL 69 (75)
T PHA02844 57 FVVFATFLTFLYL 69 (75)
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444443
No 166
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=49.15 E-value=24 Score=27.04 Aligned_cols=22 Identities=9% Similarity=-0.013 Sum_probs=9.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 044133 352 TIATRLVAIILAMVAFLALIFG 373 (384)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~ 373 (384)
...+++++++.+++++++.++.
T Consensus 116 ~~~~~i~~~i~g~ll~i~~giy 137 (145)
T PF10661_consen 116 PISPTILLSIGGILLAICGGIY 137 (145)
T ss_pred chhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 167
>CHL00114 psbX photosystem II protein X; Reviewed
Probab=49.02 E-value=24 Score=19.85 Aligned_cols=16 Identities=6% Similarity=0.202 Sum_probs=7.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 044133 355 TRLVAIILAMVAFLAL 370 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~ 370 (384)
..+...+.+.+++++.
T Consensus 7 nF~~SL~~Ga~ivvip 22 (39)
T CHL00114 7 AFINSLLLGAIIVVIP 22 (39)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 3445555555554433
No 168
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=48.15 E-value=27 Score=23.96 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhe
Q 044133 356 RLVAIILAMVAFLALIFGILIIR 378 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~ 378 (384)
..+..+++++.+++++.+++.+.
T Consensus 17 ~~iv~~~al~~l~~~isGl~l~~ 39 (88)
T PF13703_consen 17 RWIVGILALLLLLLLISGLYLWW 39 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555555666666554
No 169
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=47.55 E-value=17 Score=32.23 Aligned_cols=34 Identities=15% Similarity=0.368 Sum_probs=26.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhheecccCC
Q 044133 351 KTIATRLVAIILAMVAFLALIFGILIIRRRRDKE 384 (384)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (384)
.+...-++++++.+++.+++-.+.+|.|++|.++
T Consensus 310 t~IiaSiIAIvvIVLIMvIIYLILRYRRKKKMkK 343 (353)
T TIGR01477 310 TPIIASIIAILIIVLIMVIIYLILRYRRKKKMKK 343 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 4566667777777888888888899988887653
No 170
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=47.37 E-value=35 Score=22.68 Aligned_cols=11 Identities=36% Similarity=0.603 Sum_probs=4.2
Q ss_pred HHHHHHHHHHh
Q 044133 365 VAFLALIFGIL 375 (384)
Q Consensus 365 ~~~~~~~~~~~ 375 (384)
++++++++++.
T Consensus 44 VlvVvvivg~L 54 (93)
T PF08999_consen 44 VLVVVVIVGAL 54 (93)
T ss_dssp HHHHHHHHHHH
T ss_pred ehhHHHHHHHH
Confidence 33333333433
No 171
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=46.92 E-value=38 Score=19.94 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHhhhee
Q 044133 364 MVAFLALIFGILIIRR 379 (384)
Q Consensus 364 ~~~~~~~~~~~~~~~~ 379 (384)
++++++++++++|-.|
T Consensus 11 l~l~~~~l~~f~Wavk 26 (45)
T PF03597_consen 11 LILGLIALAAFLWAVK 26 (45)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 3333344444444333
No 172
>PTZ00046 rifin; Provisional
Probab=46.52 E-value=18 Score=32.18 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=25.6
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhhheecccCC
Q 044133 351 KTIATRLVAIILAMVAFLALIFGILIIRRRRDKE 384 (384)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (384)
.....-+++++|.+++.+++-.+.+|.|++|.++
T Consensus 315 taIiaSiiAIvVIVLIMvIIYLILRYRRKKKMkK 348 (358)
T PTZ00046 315 TAIIASIVAIVVIVLIMVIIYLILRYRRKKKMKK 348 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHH
Confidence 4556667777777888888888888888887653
No 173
>PF14851 FAM176: FAM176 family
Probab=46.40 E-value=23 Score=27.29 Aligned_cols=27 Identities=11% Similarity=0.047 Sum_probs=19.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhe
Q 044133 352 TIATRLVAIILAMVAFLALIFGILIIR 378 (384)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (384)
....++.+|.+|+++.++++++-+.|+
T Consensus 22 ~aLYFv~gVC~GLlLtLcllV~risc~ 48 (153)
T PF14851_consen 22 FALYFVSGVCAGLLLTLCLLVIRISCR 48 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhheee
Confidence 345677888888888888876666663
No 174
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=45.45 E-value=37 Score=22.60 Aligned_cols=14 Identities=43% Similarity=0.581 Sum_probs=5.3
Q ss_pred HHHHHHHHhhheec
Q 044133 367 FLALIFGILIIRRR 380 (384)
Q Consensus 367 ~~~~~~~~~~~~~~ 380 (384)
+++.+-.+..|+.|
T Consensus 16 fVap~WL~lHY~sk 29 (75)
T PF06667_consen 16 FVAPIWLILHYRSK 29 (75)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333333344433
No 175
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=45.15 E-value=13 Score=25.15 Aligned_cols=22 Identities=9% Similarity=0.176 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHhhheecccCC
Q 044133 363 AMVAFLALIFGILIIRRRRDKE 384 (384)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~ 384 (384)
++++.+++.+++.|+.+.++||
T Consensus 38 lvI~~iFil~VilwfvCC~kRk 59 (94)
T PF05393_consen 38 LVICGIFILLVILWFVCCKKRK 59 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555555555555554
No 176
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=44.31 E-value=36 Score=18.35 Aligned_cols=17 Identities=18% Similarity=0.172 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHhhheec
Q 044133 364 MVAFLALIFGILIIRRR 380 (384)
Q Consensus 364 ~~~~~~~~~~~~~~~~~ 380 (384)
+++.+++.+++=|..+|
T Consensus 18 ~iagIi~s~iv~w~~~R 34 (35)
T PF13940_consen 18 IIAGIIASLIVGWLRNR 34 (35)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 33444444444444433
No 177
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=43.78 E-value=45 Score=37.71 Aligned_cols=19 Identities=11% Similarity=0.403 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHhhheeccc
Q 044133 364 MVAFLALIFGILIIRRRRD 382 (384)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~ 382 (384)
+++++++.+.++|++||+.
T Consensus 4001 ~l~~ifilvvlf~~crKk~ 4019 (4289)
T KOG1219|consen 4001 LLALIFILVVLFWKCRKKN 4019 (4289)
T ss_pred HHHHHHHHHHHHHhhhhhc
Confidence 4444444444667666644
No 178
>PF11118 DUF2627: Protein of unknown function (DUF2627); InterPro: IPR020138 This entry represents uncharacterised membrane proteins with no known function.
Probab=43.73 E-value=49 Score=21.95 Aligned_cols=30 Identities=20% Similarity=0.322 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheecccC
Q 044133 354 ATRLVAIILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
....++.++..++-+..++++++++-||+.
T Consensus 40 wlqfl~G~~lf~~G~~Fi~GfI~~RDRKrn 69 (77)
T PF11118_consen 40 WLQFLAGLLLFAIGVGFIAGFILHRDRKRN 69 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhheeecccc
Confidence 445566666667777777787777766654
No 179
>PF10873 DUF2668: Protein of unknown function (DUF2668); InterPro: IPR022640 Members in this family of proteins are annotated as cysteine and tyrosine-rich protein 1, however currently no function is known [].
Probab=42.64 E-value=10 Score=28.39 Aligned_cols=20 Identities=25% Similarity=0.615 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 044133 357 LVAIILAMVAFLALIFGILI 376 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~ 376 (384)
+.|++.++|.++.++++++.
T Consensus 63 IaGIVfgiVfimgvva~i~i 82 (155)
T PF10873_consen 63 IAGIVFGIVFIMGVVAGIAI 82 (155)
T ss_pred eeeeehhhHHHHHHHHHHHH
Confidence 34444444444444444433
No 180
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=42.44 E-value=41 Score=22.38 Aligned_cols=6 Identities=50% Similarity=0.301 Sum_probs=2.3
Q ss_pred HHhhhe
Q 044133 373 GILIIR 378 (384)
Q Consensus 373 ~~~~~~ 378 (384)
.+..|.
T Consensus 22 l~lHY~ 27 (75)
T TIGR02976 22 LILHYR 27 (75)
T ss_pred HHHHHH
Confidence 333344
No 181
>PF01708 Gemini_mov: Geminivirus putative movement protein ; InterPro: IPR002621 This family consists of putative movement proteins from Maize streak virus and Wheat dwarf virus [].; GO: 0046740 spread of virus in host, cell to cell, 0016021 integral to membrane
Probab=41.11 E-value=22 Score=24.28 Aligned_cols=16 Identities=25% Similarity=0.281 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHhh
Q 044133 361 ILAMVAFLALIFGILI 376 (384)
Q Consensus 361 ~~~~~~~~~~~~~~~~ 376 (384)
++..++|.++-.++.|
T Consensus 42 i~~lvaVg~~YL~y~~ 57 (91)
T PF01708_consen 42 IFTLVAVGCLYLAYTW 57 (91)
T ss_pred ehHHHHHHHHHHHHHH
Confidence 3334444444444333
No 182
>PF09777 OSTMP1: Osteopetrosis-associated transmembrane protein 1 precursor; InterPro: IPR019172 Osteopetrosis-associated transmembrane protein 1 (OSTM1) is required for osteoclast and melanocyte maturation and function. Mutations in OSTM1 give rise to autosomal recessive osteopetrosis, also called autosomal recessive Albers-Schonberg disease [, ].
Probab=40.43 E-value=41 Score=28.33 Aligned_cols=15 Identities=7% Similarity=0.270 Sum_probs=6.3
Q ss_pred HHHHHHhhheecccC
Q 044133 369 ALIFGILIIRRRRDK 383 (384)
Q Consensus 369 ~~~~~~~~~~~~~~~ 383 (384)
++-++.++..+||++
T Consensus 205 ~FY~~s~~~~~~~~r 219 (237)
T PF09777_consen 205 LFYLSSYLHSERKKR 219 (237)
T ss_pred HHHHhheeeeccccc
Confidence 333444444444443
No 183
>PF12259 DUF3609: Protein of unknown function (DUF3609); InterPro: IPR022048 This domain family is found in eukaryotes and viruses, and is typically between 348 and 360 amino acids in length.
Probab=40.37 E-value=20 Score=32.28 Aligned_cols=9 Identities=11% Similarity=0.361 Sum_probs=3.6
Q ss_pred HHHHhhhee
Q 044133 371 IFGILIIRR 379 (384)
Q Consensus 371 ~~~~~~~~~ 379 (384)
++++.|++|
T Consensus 313 l~~~~~~~~ 321 (361)
T PF12259_consen 313 LISLAWLYR 321 (361)
T ss_pred HHHHHhhee
Confidence 333334444
No 184
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=39.29 E-value=41 Score=24.77 Aligned_cols=26 Identities=8% Similarity=0.312 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheec
Q 044133 355 TRLVAIILAMVAFLALIFGILIIRRR 380 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (384)
...+.++++.-+++++.+.+-+.+-|
T Consensus 44 ~lYIL~vmgfFgff~~gImlsyvRSK 69 (129)
T PF02060_consen 44 YLYILVVMGFFGFFTVGIMLSYVRSK 69 (129)
T ss_dssp T-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444454444444444444443333
No 185
>PRK01844 hypothetical protein; Provisional
Probab=39.27 E-value=43 Score=21.95 Aligned_cols=8 Identities=25% Similarity=0.712 Sum_probs=3.2
Q ss_pred HHHHHHhh
Q 044133 369 ALIFGILI 376 (384)
Q Consensus 369 ~~~~~~~~ 376 (384)
.+++++++
T Consensus 17 G~~~Gff~ 24 (72)
T PRK01844 17 GVALGFFI 24 (72)
T ss_pred HHHHHHHH
Confidence 33344443
No 186
>PHA03286 envelope glycoprotein E; Provisional
Probab=39.26 E-value=27 Score=31.92 Aligned_cols=12 Identities=33% Similarity=0.360 Sum_probs=5.1
Q ss_pred HHHHhhheeccc
Q 044133 371 IFGILIIRRRRD 382 (384)
Q Consensus 371 ~~~~~~~~~~~~ 382 (384)
+.++..|+|||+
T Consensus 409 ~~~~~~~~r~~~ 420 (492)
T PHA03286 409 LCIAGLYRRRRR 420 (492)
T ss_pred HHhHhHhhhhhh
Confidence 333444444443
No 187
>PRK00523 hypothetical protein; Provisional
Probab=39.14 E-value=44 Score=21.88 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=4.5
Q ss_pred HHHHHHHHHhh
Q 044133 366 AFLALIFGILI 376 (384)
Q Consensus 366 ~~~~~~~~~~~ 376 (384)
+++-+++++++
T Consensus 15 li~G~~~Gffi 25 (72)
T PRK00523 15 LIVGGIIGYFV 25 (72)
T ss_pred HHHHHHHHHHH
Confidence 33334444444
No 188
>PF11157 DUF2937: Protein of unknown function (DUF2937); InterPro: IPR022584 This family of proteins with unknown function appears to be found mainly in Proteobacteria.
Probab=38.05 E-value=56 Score=25.78 Aligned_cols=29 Identities=24% Similarity=0.185 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheecccCC
Q 044133 356 RLVAIILAMVAFLALIFGILIIRRRRDKE 384 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (384)
.+++.+++.+++-.+...+.+..|||++|
T Consensus 139 g~vg~l~~~~l~~~l~~l~~~~~rr~rrr 167 (167)
T PF11157_consen 139 GLVGALLGALLVELLLGLLRRPFRRRRRR 167 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccCC
Confidence 33334433333334444445554555543
No 189
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=37.63 E-value=58 Score=24.13 Aligned_cols=17 Identities=24% Similarity=0.540 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhheec
Q 044133 364 MVAFLALIFGILIIRRR 380 (384)
Q Consensus 364 ~~~~~~~~~~~~~~~~~ 380 (384)
.+++++++++++|..||
T Consensus 25 L~lVl~lI~~~aWLlkR 41 (124)
T PRK11486 25 LIGIIALILAAAWLVKR 41 (124)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555444
No 190
>PF11980 DUF3481: Domain of unknown function (DUF3481); InterPro: IPR022579 This domain of unknown function is located in the C terminus of the eukaryotic neuropilin receptor family of proteins. It is found in association with PF00754 from PFAM, PF00431 from PFAM and PF00629 from PFAM. There are two completely conserved residues (Y and E) that may be functionally important.
Probab=37.47 E-value=68 Score=21.67 Aligned_cols=19 Identities=11% Similarity=-0.017 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHhhhee
Q 044133 361 ILAMVAFLALIFGILIIRR 379 (384)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~ 379 (384)
.++++.+.+.++.+++|.|
T Consensus 24 ga~llL~~v~l~vvL~C~r 42 (87)
T PF11980_consen 24 GALLLLVAVCLGVVLYCHR 42 (87)
T ss_pred cHHHHHHHHHHHHHHhhhh
Confidence 3333333334344455444
No 191
>COG0713 NuoK NADH:ubiquinone oxidoreductase subunit 11 or 4L (chain K) [Energy production and conversion]
Probab=37.16 E-value=60 Score=22.83 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeccc
Q 044133 356 RLVAIILAMVAFLALIFGILIIRRRRD 382 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (384)
..+..+++.-+++.+.+.+.+|+||+.
T Consensus 63 ifvitvAAaE~aVGLailv~~yR~~~t 89 (100)
T COG0713 63 IFVITVAAAEAAVGLAILVALYRRRGT 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 334444445555566666666666653
No 192
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=36.66 E-value=1e+02 Score=18.84 Aligned_cols=31 Identities=16% Similarity=0.373 Sum_probs=19.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhheeccc
Q 044133 352 TIATRLVAIILAMVAFLALIFGILIIRRRRD 382 (384)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (384)
...-.++-+++.++..++++++.++...+..
T Consensus 21 sF~fViik~vismimylilGi~L~yis~~~~ 51 (54)
T PF04835_consen 21 SFWFVIIKSVISMIMYLILGIALIYISSNDD 51 (54)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhccCcc
Confidence 3444555666667777777777776655543
No 193
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=36.39 E-value=41 Score=33.39 Aligned_cols=17 Identities=29% Similarity=0.430 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhheecc
Q 044133 365 VAFLALIFGILIIRRRR 381 (384)
Q Consensus 365 ~~~~~~~~~~~~~~~~~ 381 (384)
++++++++.++||||||
T Consensus 284 livl~lL~vLl~yCrrk 300 (807)
T PF10577_consen 284 LIVLILLCVLLCYCRRK 300 (807)
T ss_pred HHHHHHHHHHHHhhhcc
Confidence 33334444455555554
No 194
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=35.64 E-value=80 Score=25.36 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 044133 357 LVAIILAMVAFLA 369 (384)
Q Consensus 357 ~~~~~~~~~~~~~ 369 (384)
++|++|.++.+++
T Consensus 163 FiGGIVL~LGv~a 175 (186)
T PF05283_consen 163 FIGGIVLTLGVLA 175 (186)
T ss_pred hhhHHHHHHHHHH
Confidence 3444433333333
No 195
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=35.55 E-value=37 Score=32.77 Aligned_cols=14 Identities=21% Similarity=0.081 Sum_probs=5.8
Q ss_pred HHHHHHhhheeccc
Q 044133 369 ALIFGILIIRRRRD 382 (384)
Q Consensus 369 ~~~~~~~~~~~~~~ 382 (384)
+++.+++|++||||
T Consensus 537 l~~G~~~~~~Rrr~ 550 (552)
T TIGR03521 537 LLFGLSFTYIRKRK 550 (552)
T ss_pred HHHHHHHHHHHHhh
Confidence 33334444444443
No 196
>PF11353 DUF3153: Protein of unknown function (DUF3153); InterPro: IPR021499 This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.
Probab=34.88 E-value=35 Score=28.11 Aligned_cols=17 Identities=41% Similarity=0.614 Sum_probs=6.5
Q ss_pred HHHHHHHHHHhhheecc
Q 044133 365 VAFLALIFGILIIRRRR 381 (384)
Q Consensus 365 ~~~~~~~~~~~~~~~~~ 381 (384)
+++++++++.++.+++|
T Consensus 190 v~I~~l~~~~~~l~~~r 206 (209)
T PF11353_consen 190 VLIVLLILLGFLLRRRR 206 (209)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 33333333334444333
No 197
>PHA02935 Hypothetical protein; Provisional
Probab=34.76 E-value=74 Score=25.47 Aligned_cols=30 Identities=17% Similarity=0.409 Sum_probs=14.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhheecc
Q 044133 352 TIATRLVAIILAMVAFLALIFGILIIRRRR 381 (384)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (384)
....+++..+..++++++++++++.|+|.|
T Consensus 313 limivlitmlsiiiiiivviaaiamykrsk 342 (349)
T PHA02935 313 LIMIVLITMLSIIIIIIVVIAAIAMYKRSK 342 (349)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 333444444444444555555555665543
No 198
>KOG3839 consensus Lectin VIP36, involved in the transport of glycoproteins carrying high mannose-type glycans [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.72 E-value=28 Score=30.45 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHhhheec
Q 044133 358 VAIILAMVAFLALIFGILIIRRR 380 (384)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~ 380 (384)
+.+.+.+++++.+++++.++..|
T Consensus 320 ill~~vv~~v~~ai~s~~i~q~r 342 (351)
T KOG3839|consen 320 ILLFVVVFLVGGAIFSIVIFQVR 342 (351)
T ss_pred HHHHHHHHHHHhhheEEEEEeeh
Confidence 33333344444555555555443
No 199
>TIGR03370 PEPCTERM_Roseo variant PEP-CTERM putative exosortase signal, Roseobacter type. A probable protein export sorting signal, PEP-CTERM, was described by Haft, et al. (PubMed:16930487). It is predicted to interact with a putative transpeptidase we designate exosortase. Most examples of this signal are recognized by model TIGR02595, but some unusual clades require different models. This model describes a variant with conserved motif VPLPA, rather than VPEP. This variant is found prominently in two members of the Rhodobacterales, namely Jannaschia sp. CCS1 and Roseobacter denitrificans OCh 114. One interesting member protein has a full-length duplication and therefore two copies of this putative sorting domain.
Probab=34.01 E-value=49 Score=16.83 Aligned_cols=10 Identities=50% Similarity=0.677 Sum_probs=4.3
Q ss_pred HHHhhheecc
Q 044133 372 FGILIIRRRR 381 (384)
Q Consensus 372 ~~~~~~~~~~ 381 (384)
.+..+.+|||
T Consensus 15 ggl~~~rRRr 24 (26)
T TIGR03370 15 GGLGAMRRRR 24 (26)
T ss_pred HHHHHHHHhh
Confidence 3444444444
No 200
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=33.67 E-value=31 Score=33.92 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheecc
Q 044133 356 RLVAIILAMVAFLALIFGILIIRRRR 381 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (384)
+..+.+++.+++++.++++.+..|||
T Consensus 845 tt~~~i~g~i~iiv~LaAla~lLrRR 870 (872)
T COG3889 845 TTGGGICGPIVIIVGLAALALLLRRR 870 (872)
T ss_pred ccccccchHHHHHHHHHHHHHHHHhh
Confidence 44444444443333333333333443
No 201
>PRK15348 type III secretion system lipoprotein SsaJ; Provisional
Probab=31.79 E-value=56 Score=27.68 Aligned_cols=20 Identities=20% Similarity=0.547 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHhhheec
Q 044133 361 ILAMVAFLALIFGILIIRRR 380 (384)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~ 380 (384)
+.+.+++...+++.+|+.||
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~ 248 (249)
T PRK15348 229 LTGLLLGVGILIGYFCLRRR 248 (249)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33333344444445555444
No 202
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=31.55 E-value=18 Score=32.54 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHhhheeccc
Q 044133 358 VAIILAMVAFLALIFGILIIRRRRD 382 (384)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (384)
+.++++-+++++++++.|+.+|||+
T Consensus 349 ~~ii~~N~v~lllg~~~~~~~rk~k 373 (374)
T TIGR03503 349 IIIIVGNVVILLLGGIGFFVWRKKK 373 (374)
T ss_pred HhhHhhhhhhhhhheeeEEEEEEee
Confidence 3344444455544444444455443
No 203
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=30.83 E-value=78 Score=17.56 Aligned_cols=24 Identities=25% Similarity=0.643 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhee
Q 044133 356 RLVAIILAMVAFLALIFGILIIRR 379 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~ 379 (384)
.-+|++++++.+++.+.+.+.+.+
T Consensus 9 ~W~Gl~~g~~l~~~~~tG~~~~f~ 32 (37)
T PF13706_consen 9 RWLGLILGLLLFVIFLTGAVMVFR 32 (37)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Confidence 345667777777777766666554
No 204
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=29.98 E-value=60 Score=27.80 Aligned_cols=7 Identities=43% Similarity=0.966 Sum_probs=2.8
Q ss_pred HHhhhee
Q 044133 373 GILIIRR 379 (384)
Q Consensus 373 ~~~~~~~ 379 (384)
+++++++
T Consensus 294 g~~ifK~ 300 (305)
T PF04639_consen 294 GYFIFKR 300 (305)
T ss_pred hheeeEe
Confidence 3344443
No 205
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=29.67 E-value=65 Score=27.56 Aligned_cols=11 Identities=18% Similarity=0.060 Sum_probs=4.0
Q ss_pred HHHHHHhhhee
Q 044133 369 ALIFGILIIRR 379 (384)
Q Consensus 369 ~~~~~~~~~~~ 379 (384)
++++++++++|
T Consensus 251 ~~~~~~~~~~~ 261 (262)
T PF14257_consen 251 LIIGLLVRFVR 261 (262)
T ss_pred HHHHHHHheEe
Confidence 33333333333
No 206
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=29.30 E-value=79 Score=18.51 Aligned_cols=9 Identities=11% Similarity=0.416 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 044133 360 IILAMVAFL 368 (384)
Q Consensus 360 ~~~~~~~~~ 368 (384)
...++.+++
T Consensus 10 ~sYg~t~l~ 18 (45)
T TIGR03141 10 LAYGITALV 18 (45)
T ss_pred HHHHHHHHH
Confidence 333333333
No 207
>PF15117 UPF0697: Uncharacterised protein family UPF0697
Probab=29.24 E-value=23 Score=23.77 Aligned_cols=15 Identities=27% Similarity=0.696 Sum_probs=7.2
Q ss_pred HHHHHHhhheecccC
Q 044133 369 ALIFGILIIRRRRDK 383 (384)
Q Consensus 369 ~~~~~~~~~~~~~~~ 383 (384)
.+-+++++|.||-++
T Consensus 26 lvS~~l~~YarrNKr 40 (99)
T PF15117_consen 26 LVSFGLFMYARRNKR 40 (99)
T ss_pred HHhhHHHHhhhhcCc
Confidence 344455555555433
No 208
>PF07584 BatA: Aerotolerance regulator N-terminal; InterPro: IPR024163 The Batl operon appears to be important in pathogenicity and aerotolerance. BatA ensures bacterial survival in the early stages of the infection process, when the infected sites are aerobic, and is produced under conditions of oxidative stress []. Proteins produced by the Batl operon share a highly-conserved sequence at their N terminus and the full length proteins carry multiple membrane-spanning domains []. This entry represents the conserved N-terminal domain, which is also found in some uncharacterised proteins.
Probab=29.02 E-value=74 Score=21.15 Aligned_cols=9 Identities=44% Similarity=0.519 Sum_probs=3.4
Q ss_pred Hhhheeccc
Q 044133 374 ILIIRRRRD 382 (384)
Q Consensus 374 ~~~~~~~~~ 382 (384)
++++.+||+
T Consensus 22 ~~~~~~~~~ 30 (77)
T PF07584_consen 22 IHYFLRRRR 30 (77)
T ss_pred HHHHhcccC
Confidence 333333333
No 209
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=28.37 E-value=75 Score=20.75 Aligned_cols=25 Identities=36% Similarity=0.810 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheec
Q 044133 356 RLVAIILAMVAFLALIFGILIIRRR 380 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (384)
..++++..++++++++.+++-|+++
T Consensus 46 ~~~~~~~~~~~~~~~~~~~~ry~~~ 70 (73)
T PF02656_consen 46 KVLGLLLIVLGLLTLIYGIYRYRRR 70 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 210
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=28.10 E-value=97 Score=23.76 Aligned_cols=28 Identities=25% Similarity=0.140 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheecc
Q 044133 354 ATRLVAIILAMVAFLALIFGILIIRRRR 381 (384)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (384)
..+++..+..++++++-++.++.+.|||
T Consensus 103 ~~T~lLW~~Pv~llllG~~~~~~~~rrr 130 (153)
T COG3088 103 GQTLLLWGLPVVLLLLGGVLLVRRARRR 130 (153)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 3445555555555554444444444444
No 211
>PF05356 Phage_Coat_B: Phage Coat protein B ; InterPro: IPR008020 The major coat protein in the capsid of filamentous bacteriophage forms a helical assembly of about 7000 identical protomers, with each protomer comprised of 46 amino acids, after the cleavage of the signal peptide. Each protomer forms a slightly curved helix that combines to form a tubular structure that encapsulates the viral DNA [].; PDB: 1QL1_A 2XKM_A 4IFM_A 1QL2_A 1IFM_A 2KLV_A 1IFN_A 2IFN_A 3IFM_A 2KSJ_A ....
Probab=28.01 E-value=84 Score=20.66 Aligned_cols=21 Identities=19% Similarity=0.191 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 044133 357 LVAIILAMVAFLALIFGILII 377 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~ 377 (384)
+.+.+++++++++++..++..
T Consensus 59 vgg~IVgvl~~laVaGlI~~l 79 (83)
T PF05356_consen 59 VGGYIVGVLVILAVAGLIYSL 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 344445544444444444333
No 212
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=27.69 E-value=64 Score=20.07 Aligned_cols=13 Identities=8% Similarity=-0.159 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHhh
Q 044133 364 MVAFLALIFGILI 376 (384)
Q Consensus 364 ~~~~~~~~~~~~~ 376 (384)
++++.+.+.+++|
T Consensus 12 i~l~~v~l~~flW 24 (58)
T COG3197 12 ILLGAVGLGAFLW 24 (58)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333334443
No 213
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=27.49 E-value=22 Score=28.70 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=18.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheeccc
Q 044133 354 ATRLVAIILAMVAFLALIFGILIIRRRRD 382 (384)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (384)
...+++=++.+++++++++.+++.+++||
T Consensus 159 ~laI~lPvvv~~~~~~~~~~~~~~R~~Rr 187 (189)
T PF14610_consen 159 ALAIALPVVVVVLALIMYGFFFWNRKKRR 187 (189)
T ss_pred eEEEEccHHHHHHHHHHHhhheeecccee
Confidence 44455555555667777777777887665
No 214
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=27.07 E-value=84 Score=21.09 Aligned_cols=14 Identities=21% Similarity=0.306 Sum_probs=6.0
Q ss_pred HHHHHHHHHhhhee
Q 044133 366 AFLALIFGILIIRR 379 (384)
Q Consensus 366 ~~~~~~~~~~~~~~ 379 (384)
++++..+++..|+|
T Consensus 13 V~IVclliya~YRR 26 (92)
T PHA02681 13 ISIVCYIVIMMYRR 26 (92)
T ss_pred HHHHHHHHHHHHHh
Confidence 33333444444544
No 215
>PF14979 TMEM52: Transmembrane 52
Probab=26.32 E-value=1.1e+02 Score=23.34 Aligned_cols=14 Identities=7% Similarity=-0.078 Sum_probs=6.6
Q ss_pred HHHHHHhhheeccc
Q 044133 369 ALIFGILIIRRRRD 382 (384)
Q Consensus 369 ~~~~~~~~~~~~~~ 382 (384)
+.+..+.++++||+
T Consensus 37 ~ta~C~rfCClrk~ 50 (154)
T PF14979_consen 37 LTASCVRFCCLRKQ 50 (154)
T ss_pred HHHHHHHHHHhccc
Confidence 44444554444444
No 216
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=26.17 E-value=22 Score=27.34 Aligned_cols=26 Identities=12% Similarity=-0.081 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhheeccc
Q 044133 357 LVAIILAMVAFLALIFGILIIRRRRD 382 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (384)
.+..+.+++++++.+++++.+.||++
T Consensus 102 ~~lW~~P~~~l~~g~~~~~~~~rr~~ 127 (148)
T PF03918_consen 102 WLLWLGPFLLLLLGGALLFRRLRRWR 127 (148)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34445555555555555555554443
No 217
>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]
Probab=25.55 E-value=46 Score=23.45 Aligned_cols=10 Identities=20% Similarity=0.248 Sum_probs=3.8
Q ss_pred HHHHHhhhee
Q 044133 370 LIFGILIIRR 379 (384)
Q Consensus 370 ~~~~~~~~~~ 379 (384)
.++.+|..+|
T Consensus 19 ~~ifyFli~R 28 (97)
T COG1862 19 FAIFYFLIIR 28 (97)
T ss_pred HHHHHHhhcC
Confidence 3333333344
No 218
>PF11240 DUF3042: Protein of unknown function (DUF3042); InterPro: IPR021402 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=25.52 E-value=89 Score=19.25 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhee
Q 044133 357 LVAIILAMVAFLALIFGILIIRR 379 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~ 379 (384)
.-|+++|.++.++++++..+.++
T Consensus 5 ~~G~l~G~~~t~aa~a~av~~~k 27 (54)
T PF11240_consen 5 GKGFLTGVAATLAAIAGAVFTFK 27 (54)
T ss_pred hhhHHHhHHHHHHHHHHHHHHHH
Confidence 34555666666655555555443
No 219
>PF11884 DUF3404: Domain of unknown function (DUF3404); InterPro: IPR021821 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 260 amino acids in length. This domain is found associated with PF02518 from PFAM, PF00512 from PFAM.
Probab=25.27 E-value=69 Score=27.23 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=4.8
Q ss_pred HHHHHHHHhhhee
Q 044133 367 FLALIFGILIIRR 379 (384)
Q Consensus 367 ~~~~~~~~~~~~~ 379 (384)
.++++++-..|+|
T Consensus 242 ~i~l~~gw~~y~~ 254 (262)
T PF11884_consen 242 NILLVLGWSLYRW 254 (262)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 220
>PRK10132 hypothetical protein; Provisional
Probab=25.09 E-value=93 Score=22.47 Aligned_cols=16 Identities=25% Similarity=0.418 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhhhee
Q 044133 364 MVAFLALIFGILIIRR 379 (384)
Q Consensus 364 ~~~~~~~~~~~~~~~~ 379 (384)
+.+++.+++++++.+|
T Consensus 92 iaagvG~llG~Ll~RR 107 (108)
T PRK10132 92 TAAAVGIFIGALLSLR 107 (108)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3444444555554443
No 221
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=24.84 E-value=1.1e+02 Score=28.56 Aligned_cols=8 Identities=38% Similarity=0.559 Sum_probs=3.0
Q ss_pred Hhhheecc
Q 044133 374 ILIIRRRR 381 (384)
Q Consensus 374 ~~~~~~~~ 381 (384)
++.|+.||
T Consensus 175 ~~~~r~~k 182 (534)
T KOG3653|consen 175 FLGYRQRK 182 (534)
T ss_pred HHHHHHhh
Confidence 33333333
No 222
>PF02430 AMA-1: Apical membrane antigen 1; InterPro: IPR003298 A novel antigen of Plasmodium falciparum has been cloned that contains a hydrophobic domain typical of an integral membrane protein. The antigen is designated apical membrane antigen 1 (AMA-1) by virtue of appearing to be located in the apical complex []. AMA-1 appears to be transported to the merozoite surface close to the time of schizont rupture. The 66kDa merozoite surface antigen (PK66) of Plasmodium knowlesi, a simian malaria, possesses vaccine-related properties believed to originate from a receptor-like role in parasite invasion of erythrocytes []. The sequence of PK66 is conserved throughout plasmodium, and shows high similarity to P. falciparum AMA-1. Following schizont rupture, the distribution of PK66 changes in a coordinate manner associated with merozoite invasion. Prior to rupture, the protein is concentrated at the apical end, following which it distributes itself entirely across the surface of the free merozoite. Immunofluorescence studies suggest that, during invasion, PK66 is excluded from the erythrocyte at, and behind, the invasion interface []. ; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2Y8R_D 2X2Z_A 2Y8T_A 2Y8S_D 1HN6_A 2Z8V_B 2Z8W_A 1Z40_E 2Q8B_A 2Q8A_A ....
Probab=24.69 E-value=25 Score=32.23 Aligned_cols=21 Identities=19% Similarity=0.094 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhe
Q 044133 358 VAIILAMVAFLALIFGILIIR 378 (384)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~ 378 (384)
+++++++++++++++++|+|+
T Consensus 432 ~~~~~~~~~~~~~l~~~~~~k 452 (471)
T PF02430_consen 432 IIISIATGAVLLALAIYWYYK 452 (471)
T ss_dssp ---------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444
No 223
>TIGR03068 srtB_sig_NPQTN sortase B signal domain, NPQTN class. This model represents one of the boutique (rare) sortase signals, recognized by sortase B (SrtB) rather than by the housekeeping-type SrtA class sortase. This sequence, beginning NPQTN, shows little similarity to several other SrtB substrates.
Probab=24.65 E-value=1.3e+02 Score=16.21 Aligned_cols=6 Identities=33% Similarity=0.512 Sum_probs=2.2
Q ss_pred Hhhhee
Q 044133 374 ILIIRR 379 (384)
Q Consensus 374 ~~~~~~ 379 (384)
+.++.|
T Consensus 26 ~~i~~~ 31 (33)
T TIGR03068 26 ITLFVR 31 (33)
T ss_pred HHHHhc
Confidence 333333
No 224
>PF14126 DUF4293: Domain of unknown function (DUF4293)
Probab=24.52 E-value=62 Score=24.98 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHhhheecccC
Q 044133 360 IILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
.+..++.++..+++++.|++|+.|
T Consensus 57 ~il~~l~~~lal~aIFlyKnR~lQ 80 (149)
T PF14126_consen 57 FILLVLSAILALIAIFLYKNRKLQ 80 (149)
T ss_pred HHHHHHHHHHHHHHHHccccHHHH
Confidence 344455555666666777777654
No 225
>PRK15471 chain length determinant protein WzzB; Provisional
Probab=24.28 E-value=1.4e+02 Score=26.63 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheecccC
Q 044133 355 TRLVAIILAMVAFLALIFGILIIRRRRDK 383 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (384)
+.++++++|.++.++++. +....|++++
T Consensus 297 Ilil~~~lG~~lg~~~vL-~r~~~r~~~~ 324 (325)
T PRK15471 297 TLVLAVLLGGMIGAGIVL-GRNALRNYNA 324 (325)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhhhc
Confidence 344444444444443333 3334444433
No 226
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=24.13 E-value=84 Score=27.43 Aligned_cols=27 Identities=22% Similarity=0.039 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhheecccCC
Q 044133 357 LVAIILAMVAFLALIFGILIIRRRRDKE 384 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (384)
++.|++.++ +.++++++..++|.|.+|
T Consensus 200 lv~Iv~~cv-aG~aAliva~~cW~Rlqr 226 (341)
T PF06809_consen 200 LVLIVVCCV-AGAAALIVAGYCWYRLQR 226 (341)
T ss_pred eehhHHHHH-HHHHHHHHhhheEEEecc
Confidence 333333333 344566777888888764
No 227
>KOG4482 consensus Sarcoglycan complex, alpha/epsilon subunits [Function unknown]
Probab=24.10 E-value=1e+02 Score=27.61 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhhheec
Q 044133 360 IILAMVAFLALIFGILIIRRR 380 (384)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~ 380 (384)
|..++.++++.+.++++|+||
T Consensus 303 Ipl~Valll~~~La~imc~rr 323 (449)
T KOG4482|consen 303 IPLGVALLLVLALAYIMCCRR 323 (449)
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 333344444445555555555
No 228
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=23.47 E-value=58 Score=24.02 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044133 357 LVAIILAMVAFLALIFG 373 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~~~ 373 (384)
+.|.+...+.++.++.+
T Consensus 82 ~~G~vlLs~GLmlL~~~ 98 (129)
T PF15099_consen 82 IFGPVLLSLGLMLLACS 98 (129)
T ss_pred hehHHHHHHHHHHHHhh
Confidence 44444444444444444
No 229
>PRK10381 LPS O-antigen length regulator; Provisional
Probab=23.24 E-value=1.2e+02 Score=27.66 Aligned_cols=26 Identities=8% Similarity=0.080 Sum_probs=11.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhe
Q 044133 353 IATRLVAIILAMVAFLALIFGILIIR 378 (384)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (384)
..+.+++.++|.++.++++.+=.+++
T Consensus 339 ~lIlvl~~llG~~lg~~~vL~r~~~r 364 (377)
T PRK10381 339 ALIVILAALIGGMLACGFVLLRHAMR 364 (377)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555444444433333
No 230
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=23.23 E-value=90 Score=21.63 Aligned_cols=19 Identities=11% Similarity=0.065 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHhhhee
Q 044133 361 ILAMVAFLALIFGILIIRR 379 (384)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~ 379 (384)
++++..+++..+..++|.+
T Consensus 57 ~~g~~~~~~~~~l~~~Yv~ 75 (91)
T PF04341_consen 57 VLGLGQIVFAWVLTWLYVR 75 (91)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333433
No 231
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=22.28 E-value=1.5e+02 Score=19.16 Aligned_cols=11 Identities=27% Similarity=0.631 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 044133 358 VAIILAMVAFL 368 (384)
Q Consensus 358 ~~~~~~~~~~~ 368 (384)
.|.++++++++
T Consensus 14 ~G~LIAvvLLL 24 (66)
T PF13179_consen 14 TGMLIAVVLLL 24 (66)
T ss_pred HhHHHHHHHHH
Confidence 33333333333
No 232
>PF13268 DUF4059: Protein of unknown function (DUF4059)
Probab=22.04 E-value=1.4e+02 Score=19.58 Aligned_cols=10 Identities=50% Similarity=0.803 Sum_probs=3.8
Q ss_pred HHHHHhhhee
Q 044133 370 LIFGILIIRR 379 (384)
Q Consensus 370 ~~~~~~~~~~ 379 (384)
++.++|..+|
T Consensus 22 ~~~~~wi~~R 31 (72)
T PF13268_consen 22 LVSGIWILWR 31 (72)
T ss_pred HHHHHHHHHH
Confidence 3333443333
No 233
>PF02404 SCF: Stem cell factor; InterPro: IPR003452 Stem cell factor (SCF) is a homodimer involved in hematopoiesis. SCF binds to and activates the SCF receptor (SCFR), a receptor tyrosine kinase. SCF stimulates the proliferation of mast cells and is able to augment the proliferation of both myeloid and lymphoid hematopoietic progenitors in bone marrow culture. It also mediates cell-cell adhesion and acts synergistically with other cytokines. SCF is a type I membrane protein, but is also found in a secretable, soluble form. The crystal structure of human SCF has been resolved and a potential receptor-binding site identified [].; GO: 0005173 stem cell factor receptor binding, 0007155 cell adhesion, 0016020 membrane; PDB: 1EXZ_A 1SCF_D 2E9W_C 2O26_A 2O27_A.
Probab=21.92 E-value=30 Score=29.04 Aligned_cols=18 Identities=11% Similarity=0.497 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhheecc
Q 044133 364 MVAFLALIFGILIIRRRR 381 (384)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~ 381 (384)
+-.|+.+++|+.+|+++.
T Consensus 224 ~SLVIGFvlG~l~WKkkq 241 (273)
T PF02404_consen 224 FSLVIGFVLGALYWKKKQ 241 (273)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 334455555555554443
No 234
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=21.90 E-value=63 Score=23.22 Aligned_cols=6 Identities=33% Similarity=0.578 Sum_probs=2.3
Q ss_pred Hhhhee
Q 044133 374 ILIIRR 379 (384)
Q Consensus 374 ~~~~~~ 379 (384)
+++..|
T Consensus 32 yf~~~R 37 (106)
T PRK05585 32 YFLIIR 37 (106)
T ss_pred HHHhcc
Confidence 333333
No 235
>PRK09459 pspG phage shock protein G; Reviewed
Probab=21.49 E-value=1.7e+02 Score=19.39 Aligned_cols=11 Identities=18% Similarity=0.338 Sum_probs=5.3
Q ss_pred HHHHHHhhhee
Q 044133 369 ALIFGILIIRR 379 (384)
Q Consensus 369 ~~~~~~~~~~~ 379 (384)
.+++++|+|+.
T Consensus 53 l~~v~vW~~r~ 63 (76)
T PRK09459 53 LAVVVVWVIRA 63 (76)
T ss_pred HHHHHHHHHHH
Confidence 34445555554
No 236
>PRK08389 putative monovalent cation/H+ antiporter subunit C; Reviewed
Probab=21.11 E-value=2e+02 Score=20.96 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=4.9
Q ss_pred hhHHHHHHHHHH
Q 044133 354 ATRLVAIILAMV 365 (384)
Q Consensus 354 ~~~~~~~~~~~~ 365 (384)
...+.++++++.
T Consensus 74 alvLtaIVI~~a 85 (114)
T PRK08389 74 ALVLTAIVIGVS 85 (114)
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 237
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=20.79 E-value=1.5e+02 Score=21.94 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhhheecccCC
Q 044133 364 MVAFLALIFGILIIRRRRDKE 384 (384)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~ 384 (384)
+++++.++....-....|+||
T Consensus 45 vvlvi~~~LLgrsi~ANRnrK 65 (125)
T PF15048_consen 45 VVLVISFFLLGRSIQANRNRK 65 (125)
T ss_pred HHHHHHHHHHHHHhHhccccc
Confidence 333333444444445556554
No 238
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=20.73 E-value=1.4e+02 Score=27.37 Aligned_cols=21 Identities=19% Similarity=0.105 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhhee
Q 044133 359 AIILAMVAFLALIFGILIIRR 379 (384)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~ 379 (384)
..++++++++++++|++||.+
T Consensus 39 l~~~aili~la~g~g~y~~~~ 59 (390)
T PRK10920 39 LSAVAIAIALAAGAGLYYHGK 59 (390)
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 334444445566666666643
No 239
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=20.37 E-value=3.3e+02 Score=19.60 Aligned_cols=8 Identities=25% Similarity=0.459 Sum_probs=3.0
Q ss_pred hHHHHHHH
Q 044133 355 TRLVAIIL 362 (384)
Q Consensus 355 ~~~~~~~~ 362 (384)
..+++.++
T Consensus 62 lffvglii 69 (128)
T PF15145_consen 62 LFFVGLII 69 (128)
T ss_pred ehHHHHHH
Confidence 33333333
No 240
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=20.28 E-value=81 Score=25.89 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=12.7
Q ss_pred CcccchhHHHHHHHHHHHHHHHHHHHhh
Q 044133 349 HHKTIATRLVAIILAMVAFLALIFGILI 376 (384)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (384)
.+......+++++.+++++.+++++...
T Consensus 180 ~~~p~v~~i~~Vi~g~~~~g~~~~i~al 207 (211)
T PF02124_consen 180 QGFPMVISIIGVICGAGALGLLVLIAAL 207 (211)
T ss_pred CCCcEEEehHHHHHHHHHHHHHHhhEEE
Confidence 3444444454555554444444343333
No 241
>PF13314 DUF4083: Domain of unknown function (DUF4083)
Probab=20.20 E-value=2.1e+02 Score=17.91 Aligned_cols=17 Identities=6% Similarity=0.436 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044133 358 VAIILAMVAFLALIFGI 374 (384)
Q Consensus 358 ~~~~~~~~~~~~~~~~~ 374 (384)
..+|+++++..++.++.
T Consensus 9 ~~~Vi~l~vl~~~~Ftl 25 (58)
T PF13314_consen 9 YILVIILIVLFGASFTL 25 (58)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 242
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=20.10 E-value=94 Score=26.36 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=5.1
Q ss_pred HHHHHHhhheecc
Q 044133 369 ALIFGILIIRRRR 381 (384)
Q Consensus 369 ~~~~~~~~~~~~~ 381 (384)
++.+.+.+.+|++
T Consensus 50 ~~~~~~~~k~R~~ 62 (247)
T COG1622 50 VLLVYFAWKYRAS 62 (247)
T ss_pred HHHHHHHhhhhhc
Confidence 3333334444433
Done!