Query 044133
Match_columns 384
No_of_seqs 240 out of 2966
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 20:34:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044133.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044133hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.2E-41 4.2E-46 334.2 27.9 338 4-341 293-723 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.4E-39 4.8E-44 319.6 28.8 334 3-344 267-702 (768)
3 2id5_A Lingo-1, leucine rich r 100.0 4.5E-39 1.5E-43 300.2 24.2 328 4-339 31-360 (477)
4 3v47_A TOLL-like receptor 5B a 100.0 5.1E-39 1.7E-43 298.2 24.0 328 5-340 30-413 (455)
5 3t6q_A CD180 antigen; protein- 100.0 1.9E-37 6.3E-42 297.9 30.7 113 2-114 54-166 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 5.8E-38 2E-42 311.2 25.0 110 126-235 267-376 (844)
7 3t6q_A CD180 antigen; protein- 100.0 9E-37 3.1E-41 293.1 30.2 329 5-342 33-445 (606)
8 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-36 7.3E-41 294.3 32.5 334 7-340 250-627 (680)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-36 4E-41 292.3 29.9 333 1-340 52-563 (606)
10 3v47_A TOLL-like receptor 5B a 100.0 2.9E-37 1E-41 286.3 22.3 310 1-318 50-412 (455)
11 2id5_A Lingo-1, leucine rich r 100.0 1.1E-36 3.9E-41 284.0 26.3 322 7-339 13-337 (477)
12 2z63_A TOLL-like receptor 4, v 100.0 1.4E-36 4.7E-41 289.9 25.4 168 171-339 345-535 (570)
13 4eco_A Uncharacterized protein 100.0 1.2E-36 4.2E-41 292.3 25.1 321 3-338 247-603 (636)
14 4eco_A Uncharacterized protein 100.0 3.4E-37 1.2E-41 296.2 20.6 335 1-343 202-586 (636)
15 1ziw_A TOLL-like receptor 3; i 100.0 1.6E-35 5.3E-40 288.2 31.4 336 5-340 25-448 (680)
16 3o6n_A APL1; leucine-rich repe 100.0 1.2E-35 4.2E-40 269.7 26.1 310 4-336 44-353 (390)
17 4fmz_A Internalin; leucine ric 100.0 6.3E-35 2.2E-39 261.0 29.0 304 3-335 42-346 (347)
18 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-35 4.1E-40 285.3 25.6 143 5-147 32-175 (606)
19 2z63_A TOLL-like receptor 4, v 100.0 1.6E-35 5.6E-40 282.4 26.0 340 5-344 28-516 (570)
20 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.9E-35 1.3E-39 278.9 26.6 127 5-137 52-181 (562)
21 4ecn_A Leucine-rich repeat pro 100.0 1E-35 3.5E-40 291.0 22.9 332 2-342 445-825 (876)
22 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-35 5.6E-40 279.1 23.6 127 5-137 21-150 (520)
23 4ecn_A Leucine-rich repeat pro 100.0 4.6E-35 1.6E-39 286.4 27.1 322 2-339 488-844 (876)
24 3j0a_A TOLL-like receptor 5; m 100.0 6.9E-35 2.3E-39 289.2 27.4 304 4-315 23-376 (844)
25 3oja_B Anopheles plasmodium-re 100.0 1.9E-34 6.4E-39 275.6 26.1 310 4-336 50-359 (597)
26 3o6n_A APL1; leucine-rich repe 100.0 1.1E-34 3.8E-39 263.4 23.3 312 2-339 66-378 (390)
27 2z81_A CD282 antigen, TOLL-lik 100.0 3.6E-35 1.2E-39 278.7 20.5 139 5-143 26-166 (549)
28 4fmz_A Internalin; leucine ric 100.0 5.8E-34 2E-38 254.7 26.8 284 2-314 63-346 (347)
29 4g8a_A TOLL-like receptor 4; l 100.0 2.2E-33 7.4E-38 271.1 29.9 326 6-338 53-583 (635)
30 1o6v_A Internalin A; bacterial 100.0 1.5E-33 5.1E-38 261.8 27.4 305 2-336 65-389 (466)
31 2z81_A CD282 antigen, TOLL-lik 100.0 1.1E-34 3.7E-39 275.4 19.0 327 1-340 46-468 (549)
32 2z7x_B TOLL-like receptor 1, v 100.0 2.7E-33 9.2E-38 264.0 25.9 145 8-161 3-150 (520)
33 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1E-32 3.6E-37 262.1 29.3 314 4-335 30-486 (562)
34 3oja_B Anopheles plasmodium-re 100.0 1.6E-33 5.6E-38 269.1 23.2 309 2-336 72-381 (597)
35 1o6v_A Internalin A; bacterial 100.0 1.8E-32 6.2E-37 254.5 27.9 306 4-339 45-370 (466)
36 1xku_A Decorin; proteoglycan, 100.0 4.3E-32 1.5E-36 240.7 27.9 285 30-332 32-329 (330)
37 2ft3_A Biglycan; proteoglycan, 100.0 3.4E-32 1.2E-36 241.5 26.4 285 30-333 34-331 (332)
38 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-31 4.3E-36 258.8 28.4 310 1-318 72-584 (635)
39 3bz5_A Internalin-J, INLJ; leu 100.0 2.3E-31 7.8E-36 245.3 27.2 313 3-343 40-395 (457)
40 3bz5_A Internalin-J, INLJ; leu 100.0 1.2E-30 4E-35 240.6 30.0 294 2-322 61-395 (457)
41 1xku_A Decorin; proteoglycan, 100.0 1.3E-30 4.5E-35 231.2 26.1 289 6-312 32-330 (330)
42 2ft3_A Biglycan; proteoglycan, 100.0 1.4E-30 4.9E-35 231.1 25.4 288 6-312 34-331 (332)
43 1ogq_A PGIP-2, polygalacturona 100.0 1.5E-31 5E-36 235.0 14.6 246 54-333 51-302 (313)
44 1ogq_A PGIP-2, polygalacturona 100.0 8.8E-31 3E-35 230.1 17.0 249 29-312 50-302 (313)
45 2z80_A TOLL-like receptor 2, v 100.0 2E-30 6.7E-35 232.2 14.3 285 26-318 28-318 (353)
46 2z66_A Variable lymphocyte rec 100.0 1.5E-29 5.1E-34 222.0 19.2 260 53-343 28-295 (306)
47 2z66_A Variable lymphocyte rec 100.0 1.7E-29 5.9E-34 221.6 16.8 287 8-329 10-302 (306)
48 2z80_A TOLL-like receptor 2, v 100.0 5.5E-30 1.9E-34 229.3 12.9 284 4-294 30-318 (353)
49 1z7x_W Ribonuclease inhibitor; 100.0 1.8E-32 6.3E-37 254.5 -3.4 332 3-337 26-413 (461)
50 1ozn_A Reticulon 4 receptor; N 100.0 9.6E-29 3.3E-33 214.6 19.7 236 77-343 32-269 (285)
51 1z7x_W Ribonuclease inhibitor; 100.0 1.9E-32 6.6E-37 254.4 -4.3 329 4-336 2-384 (461)
52 3zyj_A Leucine-rich repeat-con 100.0 7.1E-28 2.4E-32 221.9 24.8 229 53-315 64-293 (440)
53 3zyi_A Leucine-rich repeat-con 100.0 8.3E-28 2.9E-32 222.2 25.1 231 77-317 75-306 (452)
54 1jl5_A Outer protein YOPM; leu 100.0 1.2E-26 4E-31 213.7 30.4 293 6-336 92-410 (454)
55 1jl5_A Outer protein YOPM; leu 100.0 5.1E-27 1.7E-31 216.1 27.7 296 5-343 111-437 (454)
56 3zyi_A Leucine-rich repeat-con 100.0 1.5E-27 5E-32 220.6 23.0 248 6-266 55-303 (452)
57 3zyj_A Leucine-rich repeat-con 100.0 1.7E-27 5.9E-32 219.4 23.1 248 6-266 44-292 (440)
58 1ozn_A Reticulon 4 receptor; N 100.0 8E-28 2.7E-32 208.7 19.4 256 32-323 14-270 (285)
59 4fcg_A Uncharacterized protein 99.9 5.2E-27 1.8E-31 207.3 18.4 234 5-266 81-314 (328)
60 3o53_A Protein LRIM1, AGAP0063 99.9 1.2E-28 4E-33 217.1 6.5 237 51-309 32-270 (317)
61 3o53_A Protein LRIM1, AGAP0063 99.9 2.5E-28 8.5E-33 215.0 7.0 263 7-291 12-277 (317)
62 4fcg_A Uncharacterized protein 99.9 2.3E-26 7.9E-31 203.1 19.5 225 77-314 81-314 (328)
63 3g06_A SSPH2 (leucine-rich rep 99.9 2.1E-25 7.1E-30 211.6 27.3 267 6-324 41-307 (622)
64 1wwl_A Monocyte differentiatio 99.9 3.7E-27 1.3E-31 207.1 6.7 203 100-315 94-310 (312)
65 2z62_A TOLL-like receptor 4, v 99.9 7.1E-25 2.4E-29 189.2 20.2 209 77-318 28-241 (276)
66 1wwl_A Monocyte differentiatio 99.9 8.2E-27 2.8E-31 204.8 6.9 250 24-291 38-310 (312)
67 3oja_A Leucine-rich immune mol 99.9 1.8E-26 6.2E-31 214.5 9.5 147 54-210 35-182 (487)
68 3g06_A SSPH2 (leucine-rich rep 99.9 8E-24 2.7E-28 200.7 27.5 260 29-340 40-302 (622)
69 2z62_A TOLL-like receptor 4, v 99.9 2.2E-24 7.6E-29 186.1 20.3 208 29-266 28-237 (276)
70 2o6q_A Variable lymphocyte rec 99.9 7E-24 2.4E-28 182.2 23.2 185 126-318 38-222 (270)
71 3oja_A Leucine-rich immune mol 99.9 6.4E-26 2.2E-30 210.8 10.9 237 27-285 32-270 (487)
72 2o6q_A Variable lymphocyte rec 99.9 9.3E-24 3.2E-28 181.5 22.5 202 30-234 17-218 (270)
73 3rfs_A Internalin B, repeat mo 99.9 6.5E-24 2.2E-28 182.6 17.7 185 145-343 59-243 (272)
74 1p9a_G Platelet glycoprotein I 99.9 4.7E-23 1.6E-27 178.6 20.9 180 126-317 32-211 (290)
75 3ogk_B Coronatine-insensitive 99.9 1.9E-26 6.4E-31 220.8 -1.0 326 7-337 140-528 (592)
76 3rfs_A Internalin B, repeat mo 99.9 2.1E-23 7.3E-28 179.4 17.3 211 10-233 24-234 (272)
77 1p9a_G Platelet glycoprotein I 99.9 7.3E-23 2.5E-27 177.4 20.2 200 2-208 7-206 (290)
78 2xwt_C Thyrotropin receptor; s 99.9 7.3E-23 2.5E-27 172.7 14.6 196 30-231 32-236 (239)
79 3goz_A Leucine-rich repeat-con 99.9 8.2E-25 2.8E-29 196.2 2.1 260 9-292 2-299 (362)
80 2p1m_B Transport inhibitor res 99.9 1.2E-25 4.3E-30 215.2 -4.0 136 196-335 371-519 (594)
81 3goz_A Leucine-rich repeat-con 99.9 1.2E-24 4E-29 195.2 2.5 261 34-318 3-301 (362)
82 2ast_B S-phase kinase-associat 99.9 3.8E-24 1.3E-28 190.1 3.8 256 29-299 47-315 (336)
83 2xwt_C Thyrotropin receptor; s 99.9 3.5E-22 1.2E-26 168.5 15.6 196 102-311 32-236 (239)
84 2ast_B S-phase kinase-associat 99.9 3.4E-24 1.2E-28 190.4 3.1 256 54-344 48-315 (336)
85 4glp_A Monocyte differentiatio 99.9 2.1E-22 7.2E-27 176.6 14.1 227 28-267 63-308 (310)
86 3ogk_B Coronatine-insensitive 99.9 1.7E-24 5.7E-29 207.3 -0.1 305 3-316 162-528 (592)
87 2ca6_A RAN GTPase-activating p 99.9 1.2E-24 4.2E-29 197.0 -1.9 250 44-317 23-319 (386)
88 3m19_A Variable lymphocyte rec 99.9 3.1E-21 1E-25 163.9 19.0 176 7-185 16-191 (251)
89 3m19_A Variable lymphocyte rec 99.9 3.9E-21 1.3E-25 163.2 19.1 159 150-316 36-194 (251)
90 2ca6_A RAN GTPase-activating p 99.9 2.8E-24 9.6E-29 194.6 -1.3 246 20-293 23-319 (386)
91 1h6u_A Internalin H; cell adhe 99.9 2E-21 7E-26 169.9 16.8 197 25-237 37-233 (308)
92 1h6u_A Internalin H; cell adhe 99.9 1.5E-21 5E-26 170.9 15.6 214 30-269 20-233 (308)
93 4glp_A Monocyte differentiatio 99.9 8.1E-22 2.8E-26 172.9 14.0 226 5-235 64-308 (310)
94 2p1m_B Transport inhibitor res 99.9 9.3E-24 3.2E-28 202.2 -2.7 325 3-337 64-496 (594)
95 4ay9_X Follicle-stimulating ho 99.8 1.9E-20 6.5E-25 166.9 14.8 239 8-263 12-256 (350)
96 4ay9_X Follicle-stimulating ho 99.8 1E-19 3.5E-24 162.2 17.6 240 32-287 12-256 (350)
97 2o6s_A Variable lymphocyte rec 99.8 1.1E-19 3.7E-24 149.8 15.8 160 174-345 29-188 (208)
98 2o6s_A Variable lymphocyte rec 99.8 2.9E-19 9.9E-24 147.2 16.5 158 102-274 29-186 (208)
99 4fdw_A Leucine rich hypothetic 99.8 1.3E-18 4.5E-23 156.9 22.2 267 27-314 111-383 (401)
100 3sb4_A Hypothetical leucine ri 99.8 1.5E-20 5.2E-25 166.2 9.2 104 195-308 224-328 (329)
101 4fdw_A Leucine rich hypothetic 99.8 2.5E-18 8.5E-23 155.1 23.0 266 4-290 112-383 (401)
102 2v9t_B SLIT homolog 2 protein 99.8 1.7E-18 5.9E-23 143.6 15.9 137 173-317 32-168 (220)
103 1m9s_A Internalin B; cell inva 99.8 3.5E-19 1.2E-23 168.7 12.6 193 28-236 20-212 (605)
104 1m9s_A Internalin B; cell inva 99.8 1.6E-18 5.6E-23 164.2 17.1 195 10-220 26-220 (605)
105 1h6t_A Internalin B; cell adhe 99.8 8.2E-19 2.8E-23 152.0 13.5 171 51-235 44-214 (291)
106 3sb4_A Hypothetical leucine ri 99.8 2.5E-19 8.4E-24 158.4 10.4 264 4-284 48-328 (329)
107 1h6t_A Internalin B; cell adhe 99.8 1.2E-18 4.1E-23 151.0 14.4 186 11-212 30-215 (291)
108 2v9t_B SLIT homolog 2 protein 99.8 3.6E-18 1.2E-22 141.6 15.7 133 54-186 33-165 (220)
109 2xot_A Amphoterin-induced prot 99.8 1.8E-18 6.1E-23 154.8 14.6 176 8-186 21-202 (361)
110 3cvr_A Invasion plasmid antige 99.8 5.1E-18 1.7E-22 159.1 17.8 193 78-299 60-252 (571)
111 2xot_A Amphoterin-induced prot 99.8 1.8E-18 6.1E-23 154.8 13.6 180 104-291 21-203 (361)
112 2v70_A SLIT-2, SLIT homolog 2 99.8 4.6E-18 1.6E-22 141.0 15.1 137 174-318 33-170 (220)
113 4fs7_A Uncharacterized protein 99.8 2.7E-17 9.1E-22 149.0 20.8 286 2-311 68-353 (394)
114 2v70_A SLIT-2, SLIT homolog 2 99.8 8.2E-18 2.8E-22 139.5 15.3 152 8-162 14-166 (220)
115 3e6j_A Variable lymphocyte rec 99.8 1.9E-17 6.4E-22 138.3 17.1 155 152-318 22-176 (229)
116 3cvr_A Invasion plasmid antige 99.8 3.2E-17 1.1E-21 153.7 19.7 187 54-276 60-253 (571)
117 4ezg_A Putative uncharacterize 99.8 5.5E-18 1.9E-22 138.2 12.1 154 25-186 40-194 (197)
118 3e6j_A Variable lymphocyte rec 99.8 2.9E-17 1E-21 137.1 16.3 133 53-186 40-172 (229)
119 4gt6_A Cell surface protein; l 99.7 8.9E-16 3E-20 139.0 25.8 308 6-332 65-388 (394)
120 4ezg_A Putative uncharacterize 99.7 1.9E-17 6.5E-22 135.0 12.2 154 49-210 40-194 (197)
121 4fs7_A Uncharacterized protein 99.7 4.4E-16 1.5E-20 141.0 21.3 292 17-332 59-353 (394)
122 1xeu_A Internalin C; cellular 99.7 1.2E-17 4.2E-22 142.3 10.2 171 27-212 17-187 (263)
123 1xeu_A Internalin C; cellular 99.7 1.3E-17 4.5E-22 142.1 10.3 166 7-187 21-186 (263)
124 4gt6_A Cell surface protein; l 99.7 1.6E-14 5.5E-19 130.7 24.5 292 1-313 83-390 (394)
125 1w8a_A SLIT protein; signaling 99.7 2.7E-16 9.1E-21 127.5 10.2 155 174-338 30-186 (192)
126 2ell_A Acidic leucine-rich nuc 99.7 2.5E-16 8.6E-21 124.9 9.5 133 28-162 23-160 (168)
127 1dce_A Protein (RAB geranylger 99.7 2.7E-18 9.1E-23 161.8 -3.5 122 102-228 442-567 (567)
128 1dce_A Protein (RAB geranylger 99.6 6.8E-18 2.3E-22 159.0 -1.4 193 122-328 346-566 (567)
129 1w8a_A SLIT protein; signaling 99.6 4.9E-15 1.7E-19 120.0 14.2 128 8-138 11-139 (192)
130 2ell_A Acidic leucine-rich nuc 99.6 1.1E-15 3.7E-20 121.2 9.8 132 53-186 24-160 (168)
131 2je0_A Acidic leucine-rich nuc 99.6 3.7E-16 1.3E-20 121.2 6.1 128 28-157 16-148 (149)
132 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.6E-19 118.0 14.6 127 8-138 13-139 (193)
133 2o6r_A Variable lymphocyte rec 99.6 1.3E-14 4.4E-19 116.0 13.8 133 175-318 9-141 (177)
134 2wfh_A SLIT homolog 2 protein 99.6 1.4E-14 4.9E-19 117.2 13.6 131 176-318 13-143 (193)
135 2je0_A Acidic leucine-rich nuc 99.6 1.6E-15 5.6E-20 117.6 7.5 127 53-181 17-148 (149)
136 2o6r_A Variable lymphocyte rec 99.6 3.1E-14 1.1E-18 113.8 14.9 129 7-138 9-137 (177)
137 4h09_A Hypothetical leucine ri 99.6 7.5E-13 2.6E-17 119.2 22.4 134 166-311 210-343 (379)
138 4b8c_D Glucose-repressible alc 99.6 1.5E-15 5.1E-20 147.5 4.6 140 44-187 215-355 (727)
139 4b8c_D Glucose-repressible alc 99.5 3.3E-15 1.1E-19 145.1 5.8 154 20-183 215-369 (727)
140 1a9n_A U2A', U2A'; complex (nu 99.5 6.2E-15 2.1E-19 117.7 6.5 135 24-162 14-153 (176)
141 4h09_A Hypothetical leucine ri 99.5 1.9E-12 6.5E-17 116.5 23.2 279 4-303 45-358 (379)
142 1a9n_A U2A', U2A'; complex (nu 99.5 3.2E-14 1.1E-18 113.6 8.9 136 48-186 14-153 (176)
143 3g39_A Variable lymphocyte rec 99.4 1.9E-12 6.6E-17 102.4 12.1 108 200-318 12-119 (170)
144 1ds9_A Outer arm dynein; leuci 99.4 1.6E-15 5.6E-20 123.6 -6.3 113 192-317 43-156 (198)
145 1ds9_A Outer arm dynein; leuci 99.4 1.9E-15 6.4E-20 123.2 -6.6 132 25-161 14-152 (198)
146 3g39_A Variable lymphocyte rec 99.4 2.9E-12 1E-16 101.3 11.8 105 31-138 11-115 (170)
147 2r9u_A Variable lymphocyte rec 99.4 4.9E-12 1.7E-16 100.3 11.7 104 32-138 15-118 (174)
148 2r9u_A Variable lymphocyte rec 99.4 6.2E-12 2.1E-16 99.8 12.1 107 200-317 15-121 (174)
149 3un9_A NLR family member X1; l 99.3 2.5E-14 8.6E-19 127.7 -3.8 159 29-187 72-253 (372)
150 3un9_A NLR family member X1; l 99.3 1.6E-14 5.5E-19 129.0 -5.5 93 196-292 154-254 (372)
151 2ifg_A High affinity nerve gro 99.2 1.1E-10 3.7E-15 103.7 9.8 103 177-290 12-116 (347)
152 2ifg_A High affinity nerve gro 99.1 3E-10 1E-14 100.8 10.2 103 9-114 12-116 (347)
153 2ra8_A Uncharacterized protein 99.0 1.7E-10 5.7E-15 102.2 4.8 161 167-333 166-341 (362)
154 2ra8_A Uncharacterized protein 99.0 2.6E-10 9E-15 100.9 4.7 84 147-232 250-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 1.3E-09 4.6E-14 87.1 -0.5 118 193-314 32-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.6 7E-09 2.4E-13 82.9 -0.0 116 23-138 30-164 (185)
157 3e4g_A ATP synthase subunit S, 98.5 2E-08 6.9E-13 78.2 0.3 85 28-112 60-150 (176)
158 3e4g_A ATP synthase subunit S, 98.4 3.9E-08 1.3E-12 76.6 -0.1 86 52-137 60-151 (176)
159 3rw6_A Nuclear RNA export fact 98.2 2.2E-06 7.6E-11 71.9 6.0 64 252-316 169-235 (267)
160 3rw6_A Nuclear RNA export fact 98.1 2.3E-06 7.9E-11 71.8 5.5 82 26-108 167-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 3.6E-06 1.2E-10 66.8 0.8 114 195-312 39-168 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 1.1E-05 3.7E-10 64.1 1.2 114 216-333 36-168 (197)
163 2jwa_A Receptor tyrosine-prote 97.3 0.00036 1.2E-08 39.4 4.4 30 353-382 10-39 (44)
164 3rfe_A Platelet glycoprotein I 97.3 0.00058 2E-08 50.5 6.5 59 257-317 12-71 (130)
165 2ks1_B Epidermal growth factor 97.0 0.00066 2.3E-08 38.5 3.3 24 359-382 16-39 (44)
166 2l2t_A Receptor tyrosine-prote 96.9 0.0015 5E-08 37.0 4.1 28 355-382 10-38 (44)
167 2k1k_A Ephrin type-A receptor 96.6 0.0039 1.3E-07 34.2 4.2 29 353-381 9-37 (38)
168 3rfe_A Platelet glycoprotein I 96.4 0.0091 3.1E-07 44.0 6.6 39 253-291 31-69 (130)
169 2k9y_A Ephrin type-A receptor 95.5 0.017 5.8E-07 32.5 3.6 27 355-381 14-40 (41)
170 1iij_A ERBB-2 receptor protein 95.3 0.0051 1.7E-07 32.7 0.9 28 355-382 8-35 (35)
171 2ks1_B Epidermal growth factor 94.9 0.072 2.5E-06 30.2 5.0 37 348-384 8-44 (44)
172 2lz0_A Uncharacterized protein 94.5 0.1 3.6E-06 36.1 6.1 50 14-64 5-54 (100)
173 2l2t_A Receptor tyrosine-prote 92.9 0.25 8.5E-06 27.9 4.6 38 347-384 6-43 (44)
174 2l34_A TYRO protein tyrosine k 91.7 0.25 8.5E-06 26.0 3.4 27 354-380 6-32 (33)
175 2lz0_A Uncharacterized protein 91.3 0.61 2.1E-05 32.2 6.2 48 39-87 6-53 (100)
176 2jwa_A Receptor tyrosine-prote 89.3 0.9 3.1E-05 25.6 4.5 36 348-384 9-44 (44)
177 2l9u_A Receptor tyrosine-prote 86.0 0.85 2.9E-05 23.7 2.8 22 360-381 12-33 (40)
178 2l8s_A Integrin alpha-1; trans 83.6 1.8 6E-05 25.6 3.8 22 355-376 10-31 (54)
179 1zza_A Stannin, AG8_1; helix, 78.0 2.5 8.7E-05 26.3 3.4 24 356-379 16-39 (90)
180 2l6w_A Beta-type platelet-deri 76.9 0.6 2.1E-05 25.2 0.0 23 358-380 12-34 (39)
181 1pi7_A VPU protein, U ORF prot 73.5 4.1 0.00014 21.8 3.0 8 377-384 29-36 (36)
182 2klu_A T-cell surface glycopro 73.1 5.6 0.00019 24.4 3.9 6 357-362 13-18 (70)
183 2k1k_A Ephrin type-A receptor 73.0 7 0.00024 21.2 4.0 29 350-379 10-38 (38)
184 2lk9_A Bone marrow stromal ant 72.0 6.6 0.00023 20.3 3.4 12 369-380 19-30 (35)
185 3j1r_A Archaeal adhesion filam 71.7 6.9 0.00024 18.8 3.5 13 364-376 12-24 (26)
186 1afo_A Glycophorin A; integral 69.7 5.4 0.00018 21.5 2.9 7 374-380 30-36 (40)
187 2llm_A Amyloid beta A4 protein 72.0 0.99 3.4E-05 25.0 0.0 25 356-380 18-42 (43)
188 1q90_G Cytochrome B6F complex 65.4 8.6 0.00029 20.4 3.1 21 356-376 5-25 (37)
189 2knc_B Integrin beta-3; transm 59.9 16 0.00055 23.7 4.4 9 355-363 12-20 (79)
190 2k1a_A Integrin alpha-IIB; sin 57.9 22 0.00076 19.7 4.7 22 355-376 11-32 (42)
191 3arc_X Photosystem II PSBX pro 56.7 14 0.00049 20.0 3.1 22 356-377 9-30 (39)
192 2knc_A Integrin alpha-IIB; tra 55.6 30 0.001 20.5 4.6 22 355-376 13-34 (54)
193 1spf_A Pulmonary surfactant-as 55.0 20 0.00068 18.3 3.4 10 365-374 21-30 (35)
194 3bz1_X Photosystem II PSBX pro 53.1 19 0.00064 20.7 3.3 24 355-378 18-41 (50)
195 1vf5_G Protein PET G; photosyn 51.4 7 0.00024 20.7 1.3 15 357-371 6-20 (37)
196 1s7q_A H-2KB, H-2 class I hist 49.2 5.2 0.00018 34.7 1.0 7 372-378 303-309 (348)
197 2lp1_A C99; alzheimer'S D memb 53.7 3.8 0.00013 28.3 0.0 23 357-379 32-54 (122)
198 1pfi_A Major coat protein of P 45.9 21 0.00071 19.4 2.6 20 356-375 21-40 (46)
199 2knc_B Integrin beta-3; transm 42.6 16 0.00055 23.7 2.3 12 357-368 10-21 (79)
200 1cd1_A CD1, MCD1D.1; immunolog 42.0 5.4 0.00018 34.0 0.0 7 374-380 302-308 (315)
201 1q55_A EP-cadherin, C-cadherin 41.7 8 0.00027 38.3 1.2 26 355-380 705-730 (880)
202 2k21_A Potassium voltage-gated 33.8 42 0.0014 23.7 3.4 30 352-381 50-79 (138)
203 2lx0_A Membrane fusion protein 28.4 58 0.002 15.8 3.6 13 359-371 7-19 (32)
204 2l35_A DAP12-NKG2C_TM; immunor 26.5 86 0.0029 19.0 3.4 23 355-377 7-29 (63)
205 1cd1_A CD1, MCD1D.1; immunolog 25.3 15 0.00051 31.3 0.0 9 371-379 302-310 (315)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-41 Score=334.23 Aligned_cols=338 Identities=37% Similarity=0.577 Sum_probs=271.1
Q ss_pred CCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChh-hhCCCCCcEEeccCCcccccCCcccCC-------
Q 044133 4 LRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPST-LSHLTQLTTLAIASNQINGSIPLEIEN------- 75 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~------- 75 (384)
+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+.. +.++++|++|++++|.+....+..+..
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence 477777777777777677777777777777777777776544433 666777777777777665444433332
Q ss_pred --------------------CCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCC
Q 044133 76 --------------------LKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSN 135 (384)
Q Consensus 76 --------------------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 135 (384)
+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 455666666666666666677777888888888888887777777888888888888888
Q ss_pred cCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCc
Q 044133 136 RINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPS 215 (384)
Q Consensus 136 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 215 (384)
.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++...+.
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence 88877777888888888888888888877888888888999999998888878888888889999999999988878888
Q ss_pred cCCCCCCCCeeecCCCCCC-CCCC--------------------------------------------------------
Q 044133 216 SVGHLNFLQDLDLSNNKLE-DLSD-------------------------------------------------------- 238 (384)
Q Consensus 216 ~~~~l~~L~~L~l~~n~~~-~~~~-------------------------------------------------------- 238 (384)
.+..+++|+.|++++|.+. .++.
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence 8888999999999988764 2211
Q ss_pred -----CcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCcc
Q 044133 239 -----NKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNL 313 (384)
Q Consensus 239 -----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~ 313 (384)
..+.+..+..+..+++|+.|++++|++++..|..+..+++|+.|++++|.+++.+|..+..+++|+.||+++|++
T Consensus 613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred cccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 223334455677789999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCccc---cCCCeEEcccCcCCCCCCCC
Q 044133 314 SGGIPVFV---RKVPHLDVSGNKFGGEIPTT 341 (384)
Q Consensus 314 ~~~~~~~~---~~l~~l~l~~~~~~~~~p~~ 341 (384)
++.+|..+ .+|+.+++++|+++|.+|..
T Consensus 693 ~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp EECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred cCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 99999765 57899999999999999864
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-39 Score=319.60 Aligned_cols=334 Identities=38% Similarity=0.637 Sum_probs=239.0
Q ss_pred CCCCCCEEeccCCcCccCCChhhhc-CCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcc-cCCCCCCC
Q 044133 3 RLRNLVHLDLSNNHLTGHIPPTLGR-LSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLE-IENLKVLH 80 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~ 80 (384)
.+++|++|++++|.+++..+..+.. +++|++|++++|.+.+..+..|.++++|++|++++|.+....+.. +..+++|+
T Consensus 267 ~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~ 346 (768)
T 3rgz_A 267 PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346 (768)
T ss_dssp CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCC
T ss_pred ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCC
Confidence 5789999999999999777777766 599999999999999899999999999999999999998555554 88999999
Q ss_pred EEECcCCcccccCCcCCCCCC-CCCEEEcCCCccccc--------------------------CCcCCcCCCCCCEEEcc
Q 044133 81 VLDLSRNEIGGSIPSTIGHLK-RLRILDLSQNKLVGP--------------------------IPSSVGPLTQLTTLNMH 133 (384)
Q Consensus 81 ~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~--------------------------~~~~l~~l~~L~~L~l~ 133 (384)
+|++++|.+....+..+..++ +|++|++++|.+++. .+..+..+++|+.|+++
T Consensus 347 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 426 (768)
T 3rgz_A 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426 (768)
T ss_dssp EEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECC
T ss_pred EEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECc
Confidence 999999998766666665554 566666666555443 33444444445555555
Q ss_pred CCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccC
Q 044133 134 SNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPI 213 (384)
Q Consensus 134 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 213 (384)
+|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++...
T Consensus 427 ~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 506 (768)
T 3rgz_A 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506 (768)
T ss_dssp SSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred CCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcC
Confidence 55444444444445555555555555544444444555555555555555555444555555555555555555555445
Q ss_pred CccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCch---------------------
Q 044133 214 PSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQ--------------------- 272 (384)
Q Consensus 214 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------------- 272 (384)
+..+..+++|+.|++++|. +.+.+|..+..+++|+.|++++|.+++..|..
T Consensus 507 p~~~~~l~~L~~L~L~~N~--------l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~ 578 (768)
T 3rgz_A 507 PKWIGRLENLAILKLSNNS--------FSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYI 578 (768)
T ss_dssp CGGGGGCTTCCEEECCSSC--------CEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEE
T ss_pred ChHHhcCCCCCEEECCCCc--------ccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccc
Confidence 5555555555555555554 34455677888899999999998887554433
Q ss_pred -------------------------------------------------hcCCccccEEecCCCcCCCCCchhhcCCCCC
Q 044133 273 -------------------------------------------------IGKLQKLCYLDLSGNSINGKIPYQLGAIPGI 303 (384)
Q Consensus 273 -------------------------------------------------~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 303 (384)
+..+++|+.|++++|++.+.+|..+..++.|
T Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L 658 (768)
T 3rgz_A 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYL 658 (768)
T ss_dssp ECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTC
T ss_pred ccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccC
Confidence 2335678899999999999999999999999
Q ss_pred cEEeCCCCccccccCccc---cCCCeEEcccCcCCCCCCCCCCC
Q 044133 304 HTVDLSMNNLSGGIPVFV---RKVPHLDVSGNKFGGEIPTTLAN 344 (384)
Q Consensus 304 ~~L~l~~n~~~~~~~~~~---~~l~~l~l~~~~~~~~~p~~~~~ 344 (384)
+.|++++|.+++.+|..+ .+|+.|++++|.++|.+|.....
T Consensus 659 ~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~ 702 (768)
T 3rgz_A 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSA 702 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGG
T ss_pred CEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhC
Confidence 999999999999998664 57899999999999999976543
No 3
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-39 Score=300.15 Aligned_cols=328 Identities=21% Similarity=0.214 Sum_probs=279.0
Q ss_pred CCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEE
Q 044133 4 LRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLD 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 83 (384)
.+++++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+....+..|.++++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 35799999999999988888899999999999999999988888999999999999999999877777788999999999
Q ss_pred CcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccC
Q 044133 84 LSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEG 163 (384)
Q Consensus 84 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 163 (384)
+++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+..
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 99999987778889999999999999999988888889999999999999999987777778899999999999999887
Q ss_pred CCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccC
Q 044133 164 PIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDG 243 (384)
Q Consensus 164 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 243 (384)
..+..+..+++|+.|++++|......+.......+|++|++++|.++......+..+++|+.|++++|.+..++.
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----- 265 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG----- 265 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECT-----
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccCh-----
Confidence 777788999999999999987665555555556699999999999987766778899999999999998876543
Q ss_pred CCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccCc--cc
Q 044133 244 PIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPV--FV 321 (384)
Q Consensus 244 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~--~~ 321 (384)
..+..+++|+.|++++|.+++..+..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|++.+.++. ..
T Consensus 266 ---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~ 342 (477)
T 2id5_A 266 ---SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVF 342 (477)
T ss_dssp ---TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHH
T ss_pred ---hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHH
Confidence 3456689999999999999988888999999999999999999987788889999999999999999876542 22
Q ss_pred cCCCeEEcccCcCCCCCC
Q 044133 322 RKVPHLDVSGNKFGGEIP 339 (384)
Q Consensus 322 ~~l~~l~l~~~~~~~~~p 339 (384)
.......+.++...|..|
T Consensus 343 ~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 343 RRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp TTTTSSCCTTCCCBEEES
T ss_pred hhhhccccCccCceeCCc
Confidence 333334444444444333
No 4
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.1e-39 Score=298.20 Aligned_cols=328 Identities=21% Similarity=0.246 Sum_probs=264.6
Q ss_pred CCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccc-cCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEE
Q 044133 5 RNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVG-NVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLD 83 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 83 (384)
++|++|++++|.+++..+..|.++++|++|++++|.+.+ ..+.+|.++++|++|++++|.+....+..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 679999999999998888889999999999999998863 4467899999999999999999888888899999999999
Q ss_pred CcCCcccccCC--cCCCCCCCCCEEEcCCCcccccCCcC-CcCCCCCCEEEccCCcCcccCCccccCC--cccceeeccc
Q 044133 84 LSRNEIGGSIP--STIGHLKRLRILDLSQNKLVGPIPSS-VGPLTQLTTLNMHSNRINGSIPLEIGNL--NFLQVLGLSD 158 (384)
Q Consensus 84 l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~ 158 (384)
+++|.+....+ ..+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.+.+..+..+..+ .+++.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 99999875333 34888999999999999998776655 7889999999999999987776666554 4566677776
Q ss_pred ccccCCCCcc--------ccCcCCCCeeecccccccCCCCc-------------------------------------cc
Q 044133 159 NKLEGPIPST--------IASLVNLKSLSLHYNNLIGPIPS-------------------------------------TL 193 (384)
Q Consensus 159 ~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~-------------------------------------~~ 193 (384)
|.+....+.. +..+++|+.|++++|.+....+. .+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 6665433222 12345666666666654321111 11
Q ss_pred c--CCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCc
Q 044133 194 G--HLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPS 271 (384)
Q Consensus 194 ~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 271 (384)
. ..++|+.|++++|.+....+..+..+++|++|++++|.+.++. +..+..+++|++|++++|.+++..+.
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID--------DNAFWGLTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC--------TTTTTTCTTCCEEECCSSCCCEECGG
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC--------hhHhcCcccCCEEECCCCccCCcChh
Confidence 1 2368999999999998888888999999999999999877543 24566789999999999999888888
Q ss_pred hhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccCc---cccCCCeEEcccCcCCCCCCC
Q 044133 272 QIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPV---FVRKVPHLDVSGNKFGGEIPT 340 (384)
Q Consensus 272 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~---~~~~l~~l~l~~~~~~~~~p~ 340 (384)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..+. .+++|+.+++++|+++|.+|.
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 899999999999999999988888999999999999999999875553 456889999999999998873
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.9e-37 Score=297.86 Aligned_cols=113 Identities=26% Similarity=0.255 Sum_probs=59.3
Q ss_pred CCCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCE
Q 044133 2 GRLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHV 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 81 (384)
+++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+.+|.++++|++|++++|.+....+..+.++++|++
T Consensus 54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133 (606)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred ccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence 44555555555555555555555555555555555555555454555555555555555555555443444555555555
Q ss_pred EECcCCcccccCCcCCCCCCCCCEEEcCCCccc
Q 044133 82 LDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLV 114 (384)
Q Consensus 82 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 114 (384)
|++++|.+.......+..+++|++|++++|.++
T Consensus 134 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 166 (606)
T 3t6q_A 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166 (606)
T ss_dssp EECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC
T ss_pred EECCCCcccccCcccccCCcccCEEEcccCccc
Confidence 555555554322223333555555555555444
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.8e-38 Score=311.17 Aligned_cols=110 Identities=26% Similarity=0.275 Sum_probs=67.6
Q ss_pred CCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEcc
Q 044133 126 QLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLS 205 (384)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 205 (384)
+|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 267 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 346 (844)
T 3j0a_A 267 SVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ 346 (844)
T ss_dssp CCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECC
T ss_pred CccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECC
Confidence 45555555555544444555566666666666666665555566666666666666666665555666666666666666
Q ss_pred CCcccccCCccCCCCCCCCeeecCCCCCCC
Q 044133 206 ENKLVGPIPSSVGHLNFLQDLDLSNNKLED 235 (384)
Q Consensus 206 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 235 (384)
+|.+....+..|..+++|+.|++++|.+..
T Consensus 347 ~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 347 KNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp SCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 666665555566666666666666665543
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9e-37 Score=293.09 Aligned_cols=329 Identities=22% Similarity=0.206 Sum_probs=225.4
Q ss_pred CCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEEC
Q 044133 5 RNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDL 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 84 (384)
+++++|++++|.+++..+..|.++++|++|++++|.+....+.+|.++++|++|++++|.+....+..|.++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 47999999999999888889999999999999999999888999999999999999999998888889999999999999
Q ss_pred cCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccc--eeeccccccc
Q 044133 85 SRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQ--VLGLSDNKLE 162 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~~ 162 (384)
++|.+....+..+..+++|++|++++|.+.+.....+..+++|+.|++++|.+....+..+..+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 99999876677899999999999999999875545555699999999999998877666677777777 6677766654
Q ss_pred CCCC---------------------------------------------------------------------------c
Q 044133 163 GPIP---------------------------------------------------------------------------S 167 (384)
Q Consensus 163 ~~~~---------------------------------------------------------------------------~ 167 (384)
...+ .
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 3322 2
Q ss_pred cccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCC-CCCCCcccCCCC
Q 044133 168 TIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLE-DLSDNKLDGPIP 246 (384)
Q Consensus 168 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~ 246 (384)
.+..+++|++|++++|.+. ..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. .++ +
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--------~ 343 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG--------T 343 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC--------S
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc--------h
Confidence 2334445555555555444 23334444555555555555544444444444555555555554332 111 1
Q ss_pred ccccCCCCCcEEEccCCcccCCC--CchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccCc----c
Q 044133 247 PELMNCSKLTTLILGNNLLSGSI--PSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPV----F 320 (384)
Q Consensus 247 ~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~----~ 320 (384)
..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+. .
T Consensus 344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~ 423 (606)
T 3t6q_A 344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN 423 (606)
T ss_dssp STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence 22445566666666666655433 44555566666666666666555555555666666666666665544321 2
Q ss_pred ccCCCeEEcccCcCCCCCCCCC
Q 044133 321 VRKVPHLDVSGNKFGGEIPTTL 342 (384)
Q Consensus 321 ~~~l~~l~l~~~~~~~~~p~~~ 342 (384)
+++++.+++++|.+++..|...
T Consensus 424 l~~L~~L~l~~n~l~~~~~~~~ 445 (606)
T 3t6q_A 424 LHLLKVLNLSHSLLDISSEQLF 445 (606)
T ss_dssp CTTCCEEECTTCCCBTTCTTTT
T ss_pred cccCCEEECCCCccCCcCHHHH
Confidence 3455566666665555444433
No 8
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.1e-36 Score=294.26 Aligned_cols=334 Identities=24% Similarity=0.215 Sum_probs=234.2
Q ss_pred CCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCccc---------ccCCcccCCCC
Q 044133 7 LVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQIN---------GSIPLEIENLK 77 (384)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~~~ 77 (384)
|++|++++|.+++..+..+..+++|++|++++|.+.+..+.+|.++++|+.|+++++... ......|..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 555666655555555555555566666666655555444444444444444444433211 01111344455
Q ss_pred CCCEEECcCCcccccCCcCCCCCCCCCEEEc----------------------------CCCcccccCCcCCcCCCCCCE
Q 044133 78 VLHVLDLSRNEIGGSIPSTIGHLKRLRILDL----------------------------SQNKLVGPIPSSVGPLTQLTT 129 (384)
Q Consensus 78 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l----------------------------~~~~~~~~~~~~l~~l~~L~~ 129 (384)
+|++|++++|.+....+..+..+++|++|++ ++|.+++..+..+..+++|+.
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 5555555555555444444444444444444 444444445556666777777
Q ss_pred EEccCCcCccc-CCccccCCcccceeecccccccCCCCccccCcCCCCeeeccccccc--CCCCccccCCCCCCEEEccC
Q 044133 130 LNMHSNRINGS-IPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLI--GPIPSTLGHLNRLTDLDLSE 206 (384)
Q Consensus 130 L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~ 206 (384)
|++++|.+.+. .+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. +..+..+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 77777776543 3356667777777777777766666667777777888888777665 34566788889999999999
Q ss_pred CcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCC
Q 044133 207 NKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSG 286 (384)
Q Consensus 207 ~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 286 (384)
|.++.+.+..+..+++|+.|++++|.+..+....+++.....+..+++|++|++++|+++...+..|..+++|+.|++++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 99988888889999999999999999887765555444444578899999999999999977777899999999999999
Q ss_pred CcCCCCCchhhcCCCCCcEEeCCCCccccccCc----cccCCCeEEcccCcCCCCCCC
Q 044133 287 NSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPV----FVRKVPHLDVSGNKFGGEIPT 340 (384)
Q Consensus 287 n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~----~~~~l~~l~l~~~~~~~~~p~ 340 (384)
|++++..+..|..+++|+.|++++|.+++..+. .+++++.+++++|++.|.++.
T Consensus 570 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 570 NNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 999977777889999999999999999987664 467999999999999988763
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-36 Score=292.29 Aligned_cols=333 Identities=21% Similarity=0.211 Sum_probs=201.5
Q ss_pred CCCCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCC
Q 044133 1 MGRLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLH 80 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 80 (384)
|+++++|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+....+..+.++++|+
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCC
Confidence 35667777777777777666666677777777777777777666666677777777777777766655555566666677
Q ss_pred EEECcCCcccc-cCCcCCCCCCCCCEEEcCCCcccccCCcCC--------------------------------------
Q 044133 81 VLDLSRNEIGG-SIPSTIGHLKRLRILDLSQNKLVGPIPSSV-------------------------------------- 121 (384)
Q Consensus 81 ~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-------------------------------------- 121 (384)
+|++++|.+.. ..|..+.++++|++|++++|.+++..+..+
T Consensus 132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L 211 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211 (606)
T ss_dssp EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred EEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeec
Confidence 77766666653 235566666666666666665443222111
Q ss_pred --------------------------------------------------------------------------------
Q 044133 122 -------------------------------------------------------------------------------- 121 (384)
Q Consensus 122 -------------------------------------------------------------------------------- 121 (384)
T Consensus 212 ~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~ 291 (606)
T 3vq2_A 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMS 291 (606)
T ss_dssp ESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEE
T ss_pred cCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEE
Confidence
Q ss_pred ------------cCCCCCCEEEccCCcCcccC-------------------CccccCCcccceeecccccccCC--CCcc
Q 044133 122 ------------GPLTQLTTLNMHSNRINGSI-------------------PLEIGNLNFLQVLGLSDNKLEGP--IPST 168 (384)
Q Consensus 122 ------------~~l~~L~~L~l~~~~~~~~~-------------------~~~~~~~~~L~~L~l~~~~~~~~--~~~~ 168 (384)
..+++|+.|++++|.+.... ...+..+++|++|++++|.+... .+..
T Consensus 292 l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~ 371 (606)
T 3vq2_A 292 LAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYS 371 (606)
T ss_dssp EESCCCCCCCCCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEEEEECCHH
T ss_pred ecCccchhhhhccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCCCCCEEECcCCccCCCcchhhh
Confidence 11112222222222221000 00122345556666666655433 1344
Q ss_pred ccCcCCCCeeeccccccc-----------------------CCCC-ccccCCCCCCEEEccCCcccccCCccCCCCCCCC
Q 044133 169 IASLVNLKSLSLHYNNLI-----------------------GPIP-STLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQ 224 (384)
Q Consensus 169 ~~~~~~L~~L~l~~~~~~-----------------------~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 224 (384)
+..+++|++|++++|.+. ...+ ..+..+++|++|++++|.+....+..+..+++|+
T Consensus 372 ~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 372 DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451 (606)
T ss_dssp HHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred hccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence 455555555555555444 3322 2344444444444444444444444444455555
Q ss_pred eeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCc
Q 044133 225 DLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIH 304 (384)
Q Consensus 225 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 304 (384)
.|++++|.+.+. ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..|..+..+++|+
T Consensus 452 ~L~l~~n~l~~~-------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 452 TLKMAGNSFKDN-------TLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp EEECTTCEEGGG-------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred EEECCCCcCCCc-------chHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence 555555443320 1345667788899999999988877788888888999999999988877788888889999
Q ss_pred EEeCCCCccccccCc--ccc-CCCeEEcccCcCCCCCCC
Q 044133 305 TVDLSMNNLSGGIPV--FVR-KVPHLDVSGNKFGGEIPT 340 (384)
Q Consensus 305 ~L~l~~n~~~~~~~~--~~~-~l~~l~l~~~~~~~~~p~ 340 (384)
.|++++|+++...+. .++ +++.+++++|++.|.++.
T Consensus 525 ~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 525 TLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp EEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred EEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 999999988843322 233 588899999998886663
No 10
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.9e-37 Score=286.33 Aligned_cols=310 Identities=21% Similarity=0.241 Sum_probs=256.8
Q ss_pred CCCCCCCCEEeccCCcCc-cCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCC--cccCCCC
Q 044133 1 MGRLRNLVHLDLSNNHLT-GHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIP--LEIENLK 77 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~ 77 (384)
|+++++|++|++++|.+. ...+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+....+ ..+..++
T Consensus 50 ~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 129 (455)
T 3v47_A 50 FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT 129 (455)
T ss_dssp TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT
T ss_pred hccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc
Confidence 568999999999999886 3456789999999999999999998888999999999999999999875333 3488999
Q ss_pred CCCEEECcCCcccccCCcC-CCCCCCCCEEEcCCCcccccCCcCCcCC--CCCCEEEccCCcCcccCCcc--------cc
Q 044133 78 VLHVLDLSRNEIGGSIPST-IGHLKRLRILDLSQNKLVGPIPSSVGPL--TQLTTLNMHSNRINGSIPLE--------IG 146 (384)
Q Consensus 78 ~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~--------~~ 146 (384)
+|++|++++|.+....+.. +..+++|++|++++|.+.+..+..+..+ .+|+.+++++|.+....+.. +.
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~ 209 (455)
T 3v47_A 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209 (455)
T ss_dssp TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTT
T ss_pred cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccc
Confidence 9999999999998766665 7889999999999999987777666655 56677777777666443322 22
Q ss_pred CCcccceeecccccccCCCCccc-------------------------------------c--CcCCCCeeecccccccC
Q 044133 147 NLNFLQVLGLSDNKLEGPIPSTI-------------------------------------A--SLVNLKSLSLHYNNLIG 187 (384)
Q Consensus 147 ~~~~L~~L~l~~~~~~~~~~~~~-------------------------------------~--~~~~L~~L~l~~~~~~~ 187 (384)
.+++|++|++++|.+.+..+..+ . ..++|+.|++++|.+..
T Consensus 210 ~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 289 (455)
T 3v47_A 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA 289 (455)
T ss_dssp TTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE
T ss_pred ccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccc
Confidence 44566777777665543221111 1 12689999999999988
Q ss_pred CCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccC
Q 044133 188 PIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSG 267 (384)
Q Consensus 188 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 267 (384)
..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+..+. +..+..+++|++|++++|.+++
T Consensus 290 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~ 361 (455)
T 3v47_A 290 LLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSID--------SRMFENLDKLEVLDLSYNHIRA 361 (455)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC--------GGGGTTCTTCCEEECCSSCCCE
T ss_pred cchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcC--------hhHhcCcccCCEEECCCCcccc
Confidence 88888999999999999999999888889999999999999999876543 3566778999999999999998
Q ss_pred CCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccC
Q 044133 268 SIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP 318 (384)
Q Consensus 268 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 318 (384)
..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++++.+|
T Consensus 362 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 362 LGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred cChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 888999999999999999999998777788999999999999999999887
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=283.95 Aligned_cols=322 Identities=20% Similarity=0.187 Sum_probs=283.6
Q ss_pred CCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcC
Q 044133 7 LVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSR 86 (384)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 86 (384)
-+.++++++.++.. |..+ .+++++|++++|.++...+..|.++++|++|++++|.+....+..|.++++|++|++++
T Consensus 13 ~~~v~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFVAV-PEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCSSC-CSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCcC-CCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 36788888888844 4433 35899999999999988888999999999999999999988888999999999999999
Q ss_pred CcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCC
Q 044133 87 NEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIP 166 (384)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 166 (384)
|.+....+..+.++++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 99986666678999999999999999998888899999999999999999998888889999999999999999987777
Q ss_pred ccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCC
Q 044133 167 STIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIP 246 (384)
Q Consensus 167 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~ 246 (384)
..+..+++|+.|++++|.+....+..+..+++|+.|++++|......+.......+|+.|++++|.+..++.
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~-------- 241 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPY-------- 241 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCH--------
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCH--------
Confidence 789999999999999999988777889999999999999987655555555555699999999998876542
Q ss_pred ccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccCcc---ccC
Q 044133 247 PELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVF---VRK 323 (384)
Q Consensus 247 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~---~~~ 323 (384)
..+..+++|+.|++++|.+++..+..|..+++|++|++++|++.+..+..|..+++|+.|++++|.+++..+.. +.+
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 321 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGN 321 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGG
T ss_pred HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcc
Confidence 35667899999999999999888888999999999999999999888999999999999999999999765544 468
Q ss_pred CCeEEcccCcCCCCCC
Q 044133 324 VPHLDVSGNKFGGEIP 339 (384)
Q Consensus 324 l~~l~l~~~~~~~~~p 339 (384)
|+.+++++|++.|.++
T Consensus 322 L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 322 LETLILDSNPLACDCR 337 (477)
T ss_dssp CCEEECCSSCEECSGG
T ss_pred cCEEEccCCCccCccc
Confidence 8999999999987543
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=289.85 Aligned_cols=168 Identities=20% Similarity=0.245 Sum_probs=96.6
Q ss_pred CcCCCCeeecccccccCCC--CccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCC----------
Q 044133 171 SLVNLKSLSLHYNNLIGPI--PSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSD---------- 238 (384)
Q Consensus 171 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---------- 238 (384)
.+++|+.|++++|.+.... +..+..+++|++|++++|.+....+. +..+++|+.|++++|.+.....
T Consensus 345 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 423 (570)
T 2z63_A 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 423 (570)
T ss_dssp BCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred cCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCC
Confidence 3456666666666554322 33445556666666666555433332 4455555555555554432211
Q ss_pred -------CcccCCCCccccCCCCCcEEEccCCccc-CCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCC
Q 044133 239 -------NKLDGPIPPELMNCSKLTTLILGNNLLS-GSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSM 310 (384)
Q Consensus 239 -------~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 310 (384)
+.+.+..+..+..+++|++|++++|.++ +..+..+..+++|++|++++|++.+..|..+..+++|+.|++++
T Consensus 424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 503 (570)
T 2z63_A 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503 (570)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence 0111222344555667777777777665 34556666667777777777777666666677777777777777
Q ss_pred CccccccCcc---ccCCCeEEcccCcCCCCCC
Q 044133 311 NNLSGGIPVF---VRKVPHLDVSGNKFGGEIP 339 (384)
Q Consensus 311 n~~~~~~~~~---~~~l~~l~l~~~~~~~~~p 339 (384)
|.+++..+.. +++++.+++++|+++|.+|
T Consensus 504 n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 7766655433 3466777777777776655
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-36 Score=292.35 Aligned_cols=321 Identities=21% Similarity=0.323 Sum_probs=278.5
Q ss_pred CCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCc-ccc-cCChhhhCC------CCCcEEeccCCcccccCCc--c
Q 044133 3 RLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNS-LVG-NVPSTLSHL------TQLTTLAIASNQINGSIPL--E 72 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~------~~L~~L~l~~~~~~~~~~~--~ 72 (384)
++++|++|++++|.+.+..|..+.++++|++|++++|. +++ ..|..+..+ ++|++|++++|.+. ..|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 79999999999999998999999999999999999998 887 677777765 99999999999998 6677 8
Q ss_pred cCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCC-CCEEEccCCcCcccCCccccCCc--
Q 044133 73 IENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQ-LTTLNMHSNRINGSIPLEIGNLN-- 149 (384)
Q Consensus 73 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~-- 149 (384)
+..+++|++|++++|.+....+ .+..+++|++|++++|.++ ..+..+..+++ |+.|++++|.+. ..+..+...+
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred hccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence 9999999999999999986777 8899999999999999998 66777889999 999999999998 4555666544
Q ss_pred ccceeecccccccCCCCcccc-------CcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCC-
Q 044133 150 FLQVLGLSDNKLEGPIPSTIA-------SLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLN- 221 (384)
Q Consensus 150 ~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~- 221 (384)
+|+.|++++|.+.+..+..+. .+++|+.|++++|.+.......+..+++|++|++++|.++.+....+....
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence 899999999999887777777 778999999999999866666677899999999999999866555555443
Q ss_pred ------CCCeeecCCCCCCCCCCCcccCCCCcccc--CCCCCcEEEccCCcccCCCCchhcCCccccEEec------CCC
Q 044133 222 ------FLQDLDLSNNKLEDLSDNKLDGPIPPELM--NCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDL------SGN 287 (384)
Q Consensus 222 ------~L~~L~l~~n~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l------~~n 287 (384)
+|+.|++++|.+..++ ..+. .+++|+.|++++|++++ .|..+..+++|++|++ ++|
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~~lp---------~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLTKLS---------DDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp ECTTGGGCCEEECCSSCCCBCC---------GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred cccccCCccEEECcCCcCCccC---------hhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccC
Confidence 9999999999887553 3444 68999999999999997 7788889999999999 567
Q ss_pred cCCCCCchhhcCCCCCcEEeCCCCccccccCc-cccCCCeEEcccCcCCCCC
Q 044133 288 SINGKIPYQLGAIPGIHTVDLSMNNLSGGIPV-FVRKVPHLDVSGNKFGGEI 338 (384)
Q Consensus 288 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~l~l~~~~~~~~~ 338 (384)
++.+.+|..+..+++|+.|++++|.+ +.+|. ..++|+.+++++|++.+.-
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPNISID 603 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTTCEEE
T ss_pred cccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCCcccc
Confidence 88889999999999999999999999 45554 4579999999999887543
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.4e-37 Score=296.20 Aligned_cols=335 Identities=20% Similarity=0.315 Sum_probs=286.2
Q ss_pred CCCCCCCCEEeccCCcCccC-----------------CChhhh--cCCCCCeeeccCCcccccCChhhhCCCCCcEEecc
Q 044133 1 MGRLRNLVHLDLSNNHLTGH-----------------IPPTLG--RLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIA 61 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~~~-----------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 61 (384)
|.++++|++|++++|.+++. .|..+. ++++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 35789999999999999974 777788 99999999999999999999999999999999999
Q ss_pred CCc-ccc-cCCcccCCC------CCCCEEECcCCcccccCCc--CCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEE
Q 044133 62 SNQ-ING-SIPLEIENL------KVLHVLDLSRNEIGGSIPS--TIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLN 131 (384)
Q Consensus 62 ~~~-~~~-~~~~~~~~~------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (384)
+|. +.. ..|..+..+ ++|++|++++|.+. .+|. .+..+++|++|++++|.+.+..+ .+..+++|+.|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 998 765 556666554 99999999999999 7777 89999999999999999986666 888899999999
Q ss_pred ccCCcCcccCCccccCCcc-cceeecccccccCCCCccccCcC--CCCeeecccccccCCCCcccc-------CCCCCCE
Q 044133 132 MHSNRINGSIPLEIGNLNF-LQVLGLSDNKLEGPIPSTIASLV--NLKSLSLHYNNLIGPIPSTLG-------HLNRLTD 201 (384)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~ 201 (384)
+++|.+. ..+..+..+++ |++|++++|.+. ..+..+...+ +|+.|++++|.+....+..+. .+++|+.
T Consensus 360 L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 360 LAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp CCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred CCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 9999998 56667889999 999999999998 6677776654 899999999999887777777 7789999
Q ss_pred EEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhc--CCccc
Q 044133 202 LDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIG--KLQKL 279 (384)
Q Consensus 202 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L 279 (384)
|++++|.++.+....+..+++|+.|++++|.+..++...+... ...+.++++|++|++++|.++ ..+..+. .+++|
T Consensus 438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 515 (636)
T 4eco_A 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE-NENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL 515 (636)
T ss_dssp EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET-TEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC
T ss_pred EECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc-cccccccCCccEEECcCCcCC-ccChhhhhccCCCc
Confidence 9999999997766677789999999999999987766444321 112334559999999999999 5666665 89999
Q ss_pred cEEecCCCcCCCCCchhhcCCCCCcEEeC------CCCccccccCcc---ccCCCeEEcccCcCCCCCCCCCC
Q 044133 280 CYLDLSGNSINGKIPYQLGAIPGIHTVDL------SMNNLSGGIPVF---VRKVPHLDVSGNKFGGEIPTTLA 343 (384)
Q Consensus 280 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l------~~n~~~~~~~~~---~~~l~~l~l~~~~~~~~~p~~~~ 343 (384)
++|++++|++.+ +|..+..+++|+.|++ ++|.+.+.+|.. +++|+.|++++|.+ +.+|....
T Consensus 516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 999999999996 8999999999999999 567778877755 46889999999999 67777654
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.6e-35 Score=288.17 Aligned_cols=336 Identities=22% Similarity=0.212 Sum_probs=219.7
Q ss_pred CCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEEC
Q 044133 5 RNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDL 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 84 (384)
+++++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+....+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 57899999999988877778899999999999999888888888899999999999999888666667888999999999
Q ss_pred cCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCcccc--CCcccceeeccccccc
Q 044133 85 SRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIG--NLNFLQVLGLSDNKLE 162 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~ 162 (384)
++|.+....+..+.++++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+. .+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99988866667888899999999999988877777888888999999988888765554443 4467778887777666
Q ss_pred CCCCccccCc---------------------------CC--------------------------CCeeecccccccCCC
Q 044133 163 GPIPSTIASL---------------------------VN--------------------------LKSLSLHYNNLIGPI 189 (384)
Q Consensus 163 ~~~~~~~~~~---------------------------~~--------------------------L~~L~l~~~~~~~~~ 189 (384)
...+..+..+ ++ |+.|++++|.+....
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 5444333322 23 444444444444333
Q ss_pred CccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCC-CCCCcccCCCCccccCCCCCcEEEccCCcccCC
Q 044133 190 PSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLED-LSDNKLDGPIPPELMNCSKLTTLILGNNLLSGS 268 (384)
Q Consensus 190 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 268 (384)
+..+..+++|++|++++|.+....+..+..+++|+.|++++|.... ++...++......+..+++|++|++++|.+++.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~ 344 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGI 344 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCC
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCC
Confidence 3444444555555555554444444444444444444444332110 000000000011345566666666666666655
Q ss_pred CCchhcCCccccEEecC----------------------------CCcCCCCCchhhcCCCCCcEEeCCCCccccccC--
Q 044133 269 IPSQIGKLQKLCYLDLS----------------------------GNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP-- 318 (384)
Q Consensus 269 ~~~~~~~~~~L~~L~l~----------------------------~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-- 318 (384)
.+..|..+++|++|+++ +|++.+..+..+..+++|+.|++++|.+.+.++
T Consensus 345 ~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 424 (680)
T 1ziw_A 345 KSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQ 424 (680)
T ss_dssp CTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSG
T ss_pred ChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcc
Confidence 55555555555555544 444444455667777777777777777766544
Q ss_pred --ccccCCCeEEcccCcCCCCCCC
Q 044133 319 --VFVRKVPHLDVSGNKFGGEIPT 340 (384)
Q Consensus 319 --~~~~~l~~l~l~~~~~~~~~p~ 340 (384)
..+.+++.+++++|.+++..|.
T Consensus 425 ~~~~l~~L~~L~Ls~n~l~~~~~~ 448 (680)
T 1ziw_A 425 EWRGLENIFEIYLSYNKYLQLTRN 448 (680)
T ss_dssp GGTTCTTCCEEECCSCSEEECCTT
T ss_pred cccCcccccEEecCCCCcceeChh
Confidence 2345667777777766554443
No 16
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.2e-35 Score=269.73 Aligned_cols=310 Identities=21% Similarity=0.201 Sum_probs=254.9
Q ss_pred CCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEE
Q 044133 4 LRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLD 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 83 (384)
++++++|+++++.++...+..+.++++|++|++++|.++...+.+|.++++|++|++++|.+....+..|..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 58899999999999877777789999999999999999988788999999999999999999888888899999999999
Q ss_pred CcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccC
Q 044133 84 LSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEG 163 (384)
Q Consensus 84 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 163 (384)
+++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+... .+..+++|+.+++++|.+..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 999999855555578899999999999999888888899999999999999998864 35677889999999887653
Q ss_pred CCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccC
Q 044133 164 PIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDG 243 (384)
Q Consensus 164 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 243 (384)
+...++|+.|++++|.+..... ...++|+.|++++|.++.. ..+..+++|++|++++|.+..+.
T Consensus 201 -----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~------ 264 (390)
T 3o6n_A 201 -----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM------ 264 (390)
T ss_dssp -----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE------
T ss_pred -----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC------
Confidence 3445678888888887764421 2347888888888887754 46778888888888888766542
Q ss_pred CCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccCccccC
Q 044133 244 PIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFVRK 323 (384)
Q Consensus 244 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~ 323 (384)
+..+..+++|++|++++|.+++. +..+..+++|++|++++|++. .+|..+..+++|+.|++++|+++......+++
T Consensus 265 --~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~ 340 (390)
T 3o6n_A 265 --YHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 340 (390)
T ss_dssp --SGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCC
T ss_pred --hhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeCchhhcc
Confidence 34566788888888888888743 444567788888888888887 56666777888888888888888766677788
Q ss_pred CCeEEcccCcCCC
Q 044133 324 VPHLDVSGNKFGG 336 (384)
Q Consensus 324 l~~l~l~~~~~~~ 336 (384)
++.+++++|+++|
T Consensus 341 L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 341 LKNLTLSHNDWDC 353 (390)
T ss_dssp CSEEECCSSCEEH
T ss_pred CCEEEcCCCCccc
Confidence 8888888888876
No 17
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.3e-35 Score=260.97 Aligned_cols=304 Identities=26% Similarity=0.393 Sum_probs=258.6
Q ss_pred CCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEE
Q 044133 3 RLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVL 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 82 (384)
++++|++|+++++.++.. ..+..+++|++|++++|.++...+ +.++++|++|++++|.+... ..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 42 ELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred hcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 568999999999999854 348899999999999999885433 89999999999999998753 468899999999
Q ss_pred ECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeeccccccc
Q 044133 83 DLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLE 162 (384)
Q Consensus 83 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 162 (384)
++++|.+.... . +..+++|++|++++|...... ..+..+++|+.|++++|.+....+ +..+++|++|++++|.+.
T Consensus 116 ~l~~n~i~~~~-~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDIS-P-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCCG-G-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCch-h-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 99999988442 2 888999999999999755333 348889999999999999875543 788999999999999987
Q ss_pred CCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCccc
Q 044133 163 GPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLD 242 (384)
Q Consensus 163 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 242 (384)
... .+..+++|+.+++++|.+....+ +..+++|++|++++|.++...+ +..+++|++|++++|.+.++
T Consensus 191 ~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~------ 258 (347)
T 4fmz_A 191 DIS--PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI------ 258 (347)
T ss_dssp CCG--GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC------
T ss_pred ccc--cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC------
Confidence 543 38889999999999998875533 7889999999999999886544 88999999999999988765
Q ss_pred CCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccC-ccc
Q 044133 243 GPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP-VFV 321 (384)
Q Consensus 243 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~~ 321 (384)
+.+..+++|++|++++|.+++. ..+..+++|++|++++|++.+..+..+..+++|+.|++++|++++..| ..+
T Consensus 259 ----~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l 332 (347)
T 4fmz_A 259 ----NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASL 332 (347)
T ss_dssp ----GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGC
T ss_pred ----hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhh
Confidence 3466789999999999999865 568889999999999999998889999999999999999999998766 567
Q ss_pred cCCCeEEcccCcCC
Q 044133 322 RKVPHLDVSGNKFG 335 (384)
Q Consensus 322 ~~l~~l~l~~~~~~ 335 (384)
++++.+++++|.++
T Consensus 333 ~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 333 SKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEESSSCC---
T ss_pred hccceeehhhhccc
Confidence 89999999999875
No 18
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-35 Score=285.28 Aligned_cols=143 Identities=22% Similarity=0.248 Sum_probs=129.1
Q ss_pred CCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEEC
Q 044133 5 RNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDL 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 84 (384)
+++++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+....+..|.++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 67999999999999888889999999999999999999888889999999999999999999888899999999999999
Q ss_pred cCCcccccCCcCCCCCCCCCEEEcCCCcccc-cCCcCCcCCCCCCEEEccCCcCcccCCccccC
Q 044133 85 SRNEIGGSIPSTIGHLKRLRILDLSQNKLVG-PIPSSVGPLTQLTTLNMHSNRINGSIPLEIGN 147 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 147 (384)
++|.+....+..+.++++|++|++++|.+.+ ..+..+..+++|+.|++++|.+.+..+..+..
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 175 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh
Confidence 9999987766789999999999999999986 45788999999999999999988665554443
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=282.40 Aligned_cols=340 Identities=23% Similarity=0.213 Sum_probs=225.8
Q ss_pred CCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEEC
Q 044133 5 RNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDL 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 84 (384)
+++++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+....+..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 35777777777777666666777777777777777777666667777777777777777776666666777777777777
Q ss_pred cCCcccccCCcCCCCCCCCCEEEcCCCccccc-CCcCCcCCCCCCEEEccCCcCcccCCccccCCccc----ceeecccc
Q 044133 85 SRNEIGGSIPSTIGHLKRLRILDLSQNKLVGP-IPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFL----QVLGLSDN 159 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L----~~L~l~~~ 159 (384)
++|.+....+..+..+++|++|++++|.+.+. .+..+.++++|+.|++++|.+....+..+..+++| +.+++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 77776644444566777777777777776652 35666667777777777776654433333333333 33333332
Q ss_pred cccC----------------------------------------------------------------------------
Q 044133 160 KLEG---------------------------------------------------------------------------- 163 (384)
Q Consensus 160 ~~~~---------------------------------------------------------------------------- 163 (384)
.+..
T Consensus 188 ~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~ 267 (570)
T 2z63_A 188 PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYL 267 (570)
T ss_dssp CCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEET
T ss_pred CceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcc
Confidence 2211
Q ss_pred -----CCCccccCcCCCCeeeccccc----------------------ccCCCCcc-------------------ccCCC
Q 044133 164 -----PIPSTIASLVNLKSLSLHYNN----------------------LIGPIPST-------------------LGHLN 197 (384)
Q Consensus 164 -----~~~~~~~~~~~L~~L~l~~~~----------------------~~~~~~~~-------------------~~~~~ 197 (384)
..+..+..+++|+.|++++|. +....... ...++
T Consensus 268 ~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 347 (570)
T 2z63_A 268 DYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLP 347 (570)
T ss_dssp TEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCT
T ss_pred hhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCC
Confidence 111122223344444443333 32111100 14578
Q ss_pred CCCEEEccCCcccccC--CccCCCCCCCCeeecCCCCCCCCC---------------CCcccCCCC-ccccCCCCCcEEE
Q 044133 198 RLTDLDLSENKLVGPI--PSSVGHLNFLQDLDLSNNKLEDLS---------------DNKLDGPIP-PELMNCSKLTTLI 259 (384)
Q Consensus 198 ~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~---------------~~~~~~~~~-~~~~~~~~L~~L~ 259 (384)
+|++|++++|.++... +..+..+++|+.|++++|.+..++ .+.+.+..+ ..+..+++|++|+
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred CCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 8999999999887543 566788999999999999765432 223333322 3567788888888
Q ss_pred ccCCcccCCCCchhcCCccccEEecCCCcCC-CCCchhhcCCCCCcEEeCCCCccccccCcc---ccCCCeEEcccCcCC
Q 044133 260 LGNNLLSGSIPSQIGKLQKLCYLDLSGNSIN-GKIPYQLGAIPGIHTVDLSMNNLSGGIPVF---VRKVPHLDVSGNKFG 335 (384)
Q Consensus 260 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~---~~~l~~l~l~~~~~~ 335 (384)
+++|.+++..+..+..+++|++|++++|.+. +.+|..+..+++|+.|++++|++++..|.. +++|+.+++++|.++
T Consensus 428 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 507 (570)
T 2z63_A 428 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507 (570)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCC
Confidence 8888888777778888888888888888887 457788888899999999999888776644 457889999999988
Q ss_pred CCCCCCCCC
Q 044133 336 GEIPTTLAN 344 (384)
Q Consensus 336 ~~~p~~~~~ 344 (384)
+..|.....
T Consensus 508 ~~~~~~~~~ 516 (570)
T 2z63_A 508 SVPDGIFDR 516 (570)
T ss_dssp CCCTTTTTT
T ss_pred CCCHHHhhc
Confidence 876655443
No 20
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.9e-35 Score=278.88 Aligned_cols=127 Identities=24% Similarity=0.277 Sum_probs=86.8
Q ss_pred CCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEEC
Q 044133 5 RNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDL 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 84 (384)
++|++|++++|.+++..+..|.++++|++|++++|.+++..+++|.++++|++|++++|.+.... .. .+++|++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~--~l~~L~~L~L 128 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS-CC--PMASLRHLDL 128 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEEC-SC--CCTTCSEEEC
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccC-cc--ccccCCEEEC
Confidence 56777777777777666667777777777777777777666777777777777777777776433 22 6677777777
Q ss_pred cCCccccc-CCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCC--CEEEccCCcC
Q 044133 85 SRNEIGGS-IPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQL--TTLNMHSNRI 137 (384)
Q Consensus 85 ~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 137 (384)
++|.+... .+..+.++++|++|++++|.++.. .+..+++| +.|++++|.+
T Consensus 129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 77777642 245677777777777777776542 33444444 6777766665
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1e-35 Score=291.02 Aligned_cols=332 Identities=22% Similarity=0.280 Sum_probs=212.5
Q ss_pred CCCCCCCEEeccCCcCcc-----------------CCChhhh--cCCCCCeeeccCCcccccCChhhhCCCCCcEEeccC
Q 044133 2 GRLRNLVHLDLSNNHLTG-----------------HIPPTLG--RLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIAS 62 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~-----------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 62 (384)
.++++|++|++++|.+++ ..|..+. ++++|++|++++|.+.+..|..|.++++|+.|++++
T Consensus 445 ~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~ 524 (876)
T 4ecn_A 445 QRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524 (876)
T ss_dssp GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTT
T ss_pred hcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcC
Confidence 467788888888888876 2555555 888888888888887777788888888888888888
Q ss_pred Cc-ccc-cCCcc-------cCCCCCCCEEECcCCcccccCCc--CCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEE
Q 044133 63 NQ-ING-SIPLE-------IENLKVLHVLDLSRNEIGGSIPS--TIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLN 131 (384)
Q Consensus 63 ~~-~~~-~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (384)
|+ +.. ..|.. +..+++|++|++++|.+. .+|. .+..+++|++|++++|.++ ..+ .+..+++|+.|+
T Consensus 525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLK 601 (876)
T ss_dssp CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEE
T ss_pred CCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEE
Confidence 87 554 33332 334557888888888777 6666 6777888888888888777 444 677777888888
Q ss_pred ccCCcCcccCCccccCCcc-cceeecccccccCCCCccccCcC--CCCeeecccccccCCCCccc---c--CCCCCCEEE
Q 044133 132 MHSNRINGSIPLEIGNLNF-LQVLGLSDNKLEGPIPSTIASLV--NLKSLSLHYNNLIGPIPSTL---G--HLNRLTDLD 203 (384)
Q Consensus 132 l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~---~--~~~~L~~L~ 203 (384)
+++|.+. ..+..+..+++ |+.|++++|.+. ..+..+...+ +|+.|++++|.+....+... . .+++|+.|+
T Consensus 602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT 679 (876)
T ss_dssp CCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred CcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence 8888777 45556777777 888888887776 4555555443 37777777776654332211 1 234667777
Q ss_pred ccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhc--CCccccE
Q 044133 204 LSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIG--KLQKLCY 281 (384)
Q Consensus 204 l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~ 281 (384)
+++|.++.+....+..+++|+.|++++|.+..++...+.... ..+.++++|+.|++++|+++ ..+..+. .+++|+.
T Consensus 680 Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~-~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~ 757 (876)
T 4ecn_A 680 LSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKD-GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSN 757 (876)
T ss_dssp CCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTT-SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCE
T ss_pred ccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcccc-ccccccCCccEEECCCCCCc-cchHHhhhccCCCcCE
Confidence 777766644444444666677777777766655543332211 11233446666666666666 3444444 5666666
Q ss_pred EecCCCcCCCCCchhhcCCCCCcEEeCCC------CccccccCcc---ccCCCeEEcccCcCCCCCCCCC
Q 044133 282 LDLSGNSINGKIPYQLGAIPGIHTVDLSM------NNLSGGIPVF---VRKVPHLDVSGNKFGGEIPTTL 342 (384)
Q Consensus 282 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~------n~~~~~~~~~---~~~l~~l~l~~~~~~~~~p~~~ 342 (384)
|++++|.+.+ +|..+..+++|+.|++++ |.+.+.+|.. +++|+.|++++|.+ +.+|...
T Consensus 758 L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 758 MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp EECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred EEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh
Confidence 6666666664 555566666666666654 4455555533 34556666666666 4555443
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.6e-35 Score=279.13 Aligned_cols=127 Identities=26% Similarity=0.287 Sum_probs=100.0
Q ss_pred CCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEEC
Q 044133 5 RNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDL 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 84 (384)
++|++|++++|.+++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|.+.... .. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKIS-CH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEE-CC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecC-cc--ccCCccEEec
Confidence 57899999999888777778889999999999999888777888888999999999999887443 33 7888999999
Q ss_pred cCCcccc-cCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCC--CEEEccCCcC
Q 044133 85 SRNEIGG-SIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQL--TTLNMHSNRI 137 (384)
Q Consensus 85 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 137 (384)
++|.+.. ..|..+..+++|++|++++|.+.+ ..+..+++| +.|++++|.+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 9988875 356788888888888888888764 234445555 6666666655
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=4.6e-35 Score=286.40 Aligned_cols=322 Identities=20% Similarity=0.287 Sum_probs=270.5
Q ss_pred CCCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCc-ccc-cCChhhhCC-------CCCcEEeccCCcccccCCc-
Q 044133 2 GRLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNS-LVG-NVPSTLSHL-------TQLTTLAIASNQINGSIPL- 71 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~-------~~L~~L~l~~~~~~~~~~~- 71 (384)
.++++|++|++++|.+.+..|..+.++++|++|++++|. +++ ..|..+.++ ++|+.|++++|.+. ..|.
T Consensus 488 ~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 566 (876)
T 4ecn_A 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPAS 566 (876)
T ss_dssp GGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCH
T ss_pred ccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCCh
Confidence 389999999999999988999999999999999999998 876 566655554 49999999999998 6676
Q ss_pred -ccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCC-CCEEEccCCcCcccCCccccCCc
Q 044133 72 -EIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQ-LTTLNMHSNRINGSIPLEIGNLN 149 (384)
Q Consensus 72 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~ 149 (384)
.+.++++|+.|++++|.+. .+| .+..+++|++|++++|.+. ..+..+..+++ |+.|++++|.+. ..+..+...+
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred hhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence 8999999999999999998 666 8999999999999999998 66777888998 999999999998 4556666554
Q ss_pred --ccceeecccccccCCCCcc---cc--CcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCC---
Q 044133 150 --FLQVLGLSDNKLEGPIPST---IA--SLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGH--- 219 (384)
Q Consensus 150 --~L~~L~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--- 219 (384)
+|+.|++++|.+.+..+.. +. ..++|+.|++++|.+.......+..+++|+.|++++|.+..+....+..
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~ 722 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTS
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccc
Confidence 4999999999987654422 22 3458999999999998554455568999999999999998655555543
Q ss_pred ----CCCCCeeecCCCCCCCCCCCcccCCCCcccc--CCCCCcEEEccCCcccCCCCchhcCCccccEEecCC------C
Q 044133 220 ----LNFLQDLDLSNNKLEDLSDNKLDGPIPPELM--NCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSG------N 287 (384)
Q Consensus 220 ----l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~------n 287 (384)
+++|+.|++++|.+..++ ..+. .+++|+.|++++|.+++ .|..+..+++|+.|++++ |
T Consensus 723 ~l~nl~~L~~L~Ls~N~L~~lp---------~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKLTSLS---------DDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp CCTTGGGCCEEECCSSCCCCCC---------GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred cccccCCccEEECCCCCCccch---------HHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence 349999999999887553 3444 68999999999999996 677788999999999976 7
Q ss_pred cCCCCCchhhcCCCCCcEEeCCCCccccccCc-cccCCCeEEcccCcCCCCCC
Q 044133 288 SINGKIPYQLGAIPGIHTVDLSMNNLSGGIPV-FVRKVPHLDVSGNKFGGEIP 339 (384)
Q Consensus 288 ~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~l~l~~~~~~~~~p 339 (384)
.+.+.+|..+..+++|+.|++++|++ +.+|. ..++|+.|++++|++....+
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~~i~~ 844 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNISIDV 844 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTCEEEC
T ss_pred cccccChHHHhcCCCCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCCccCh
Confidence 78888999999999999999999999 56665 45789999999999875443
No 24
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.9e-35 Score=289.17 Aligned_cols=304 Identities=25% Similarity=0.265 Sum_probs=240.1
Q ss_pred CCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccc-cCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEE
Q 044133 4 LRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVG-NVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVL 82 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 82 (384)
.++|++|++++|.+++..+..|.++++|++|++++|.... ..+.+|.++++|++|++++|.+....+..|.++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 4789999999999998888899999999999999995543 447889999999999999999998889999999999999
Q ss_pred ECcCCcccccCCcC--CCCCCCCCEEEcCCCcccccCC-cCCcCCCCCCEEEccCCcCcccCCccccCC--cccceeecc
Q 044133 83 DLSRNEIGGSIPST--IGHLKRLRILDLSQNKLVGPIP-SSVGPLTQLTTLNMHSNRINGSIPLEIGNL--NFLQVLGLS 157 (384)
Q Consensus 83 ~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~ 157 (384)
++++|.+....+.. +.++++|++|++++|.+++..+ ..+..+++|+.|++++|.+....+..+..+ ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999988644444 8899999999999999886644 578899999999999999987777777766 788888888
Q ss_pred cccccCCCCccccCcCC------CCeeecccccccCCCCccc------------------------------------cC
Q 044133 158 DNKLEGPIPSTIASLVN------LKSLSLHYNNLIGPIPSTL------------------------------------GH 195 (384)
Q Consensus 158 ~~~~~~~~~~~~~~~~~------L~~L~l~~~~~~~~~~~~~------------------------------------~~ 195 (384)
+|.+....+..+..+++ |+.|++++|.+....+..+ ..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 88877666655555544 7888888775543222111 11
Q ss_pred --CCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchh
Q 044133 196 --LNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQI 273 (384)
Q Consensus 196 --~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 273 (384)
.++|+.|++++|.+....+..+..+++|+.|++++|.+..+.. ..+..+++|++|++++|.+++..+..|
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 334 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD--------EAFYGLDNLQVLNLSYNLLGELYSSNF 334 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT--------TTTTTCSSCCEEEEESCCCSCCCSCSC
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh--------HHhcCCCCCCEEECCCCCCCccCHHHh
Confidence 2578888888888777777778888888888888887665432 345567788888888888877767777
Q ss_pred cCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCcccc
Q 044133 274 GKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSG 315 (384)
Q Consensus 274 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 315 (384)
..+++|++|++++|.+....+..|..+++|+.|++++|.+++
T Consensus 335 ~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 335 YGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp SSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred cCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 778888888888888776666677777888888888777664
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-34 Score=275.64 Aligned_cols=310 Identities=21% Similarity=0.207 Sum_probs=250.8
Q ss_pred CCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEE
Q 044133 4 LRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLD 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 83 (384)
+++++.++++++.++...+..+.++++|++|++++|.+.+..+.+|..+++|+.|++++|.+....+..|.++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 47889999999999888888889999999999999999988888999999999999999999888888889999999999
Q ss_pred CcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccC
Q 044133 84 LSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEG 163 (384)
Q Consensus 84 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 163 (384)
+++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+... .+..+++|+.|++++|.+..
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc
Confidence 999999865556678999999999999999988888899999999999999998764 25567888999998887653
Q ss_pred CCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccC
Q 044133 164 PIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDG 243 (384)
Q Consensus 164 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 243 (384)
+...++|+.|++++|.+...... ..++|+.|++++|.++.. ..+..+++|+.|++++|.+..+
T Consensus 207 -----l~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~------- 269 (597)
T 3oja_B 207 -----LAIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI------- 269 (597)
T ss_dssp -----EECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE-------
T ss_pred -----ccCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCC-------
Confidence 34456788888888877643221 236788888888887643 5677788888888888876543
Q ss_pred CCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccCccccC
Q 044133 244 PIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFVRK 323 (384)
Q Consensus 244 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~ 323 (384)
.+..+..+++|+.|++++|.+++. +..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|++++.....+++
T Consensus 270 -~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 346 (597)
T 3oja_B 270 -MYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHT 346 (597)
T ss_dssp -ESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCC
T ss_pred -CHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCC
Confidence 235566778888888888888753 444566788888888888887 56777777888888888888888776677778
Q ss_pred CCeEEcccCcCCC
Q 044133 324 VPHLDVSGNKFGG 336 (384)
Q Consensus 324 l~~l~l~~~~~~~ 336 (384)
|+.+++++|+++|
T Consensus 347 L~~L~l~~N~~~~ 359 (597)
T 3oja_B 347 LKNLTLSHNDWDC 359 (597)
T ss_dssp CSEEECCSSCEEH
T ss_pred CCEEEeeCCCCCC
Confidence 8888888888765
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.1e-34 Score=263.38 Aligned_cols=312 Identities=22% Similarity=0.197 Sum_probs=261.8
Q ss_pred CCCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCE
Q 044133 2 GRLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHV 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 81 (384)
.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+....+..|..+++|++
T Consensus 66 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 145 (390)
T 3o6n_A 66 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145 (390)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcE
Confidence 35789999999999999888889999999999999999999888888999999999999999998666666889999999
Q ss_pred EECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccc
Q 044133 82 LDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKL 161 (384)
Q Consensus 82 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 161 (384)
|++++|.+....+..+..+++|++|++++|.++.. .+..+++|+.+++++|.+.. +...++|++|++++|.+
T Consensus 146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSI 217 (390)
T ss_dssp EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCC
T ss_pred EECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCee
Confidence 99999999877778899999999999999998765 45668899999999998864 34556899999999988
Q ss_pred cCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcc
Q 044133 162 EGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKL 241 (384)
Q Consensus 162 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 241 (384)
... +. ...++|+.|++++|.+... ..+..+++|++|++++|.+....+..+..+++|+.|++++|.+..++.
T Consensus 218 ~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--- 289 (390)
T 3o6n_A 218 NVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL--- 289 (390)
T ss_dssp CEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC---
T ss_pred eec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc---
Confidence 754 22 2357999999999998854 578899999999999999998888899999999999999999876532
Q ss_pred cCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccCc-c
Q 044133 242 DGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPV-F 320 (384)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~ 320 (384)
.+..+++|++|++++|.++ ..+..+..+++|++|++++|++.+. + +..+++|+.|++++|++.+.... .
T Consensus 290 ------~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~~~ 359 (390)
T 3o6n_A 290 ------YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLRAL 359 (390)
T ss_dssp ------SSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred ------ccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHHHH
Confidence 3345789999999999998 4556678899999999999999854 3 67789999999999999986543 3
Q ss_pred ccCCCeEEcccCcCCCCCC
Q 044133 321 VRKVPHLDVSGNKFGGEIP 339 (384)
Q Consensus 321 ~~~l~~l~l~~~~~~~~~p 339 (384)
+..+....+..+...|..|
T Consensus 360 ~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 360 FRNVARPAVDDADQHCKID 378 (390)
T ss_dssp TTTCCTTTBCCCCSCCCTT
T ss_pred HHHHHhhcccccCceeccc
Confidence 3444444444444444433
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.6e-35 Score=278.73 Aligned_cols=139 Identities=20% Similarity=0.184 Sum_probs=86.6
Q ss_pred CCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEEC
Q 044133 5 RNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDL 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 84 (384)
++|++|++++|.+++..+..|.++++|++|++++|.+.+..+.+|.++++|++|++++|.+....+..|.++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 46677777777766666666667777777777777666666666666777777777777666555555666677777777
Q ss_pred cCCccccc-CCcCCCCCCCCCEEEcCCCc-ccccCCcCCcCCCCCCEEEccCCcCcccCCc
Q 044133 85 SRNEIGGS-IPSTIGHLKRLRILDLSQNK-LVGPIPSSVGPLTQLTTLNMHSNRINGSIPL 143 (384)
Q Consensus 85 ~~~~~~~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 143 (384)
++|.+... .+..+.++++|++|++++|. +....+..+..+++|+.|++++|.+.+..+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 76666532 33456666666666666665 3333334555566666666666655543333
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.8e-34 Score=254.74 Aligned_cols=284 Identities=29% Similarity=0.413 Sum_probs=243.1
Q ss_pred CCCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCE
Q 044133 2 GRLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHV 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 81 (384)
..+++|++|++++|.+++..+ +.++++|++|++++|.++.. .++.++++|++|++++|.+....+ +..+++|++
T Consensus 63 ~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~ 136 (347)
T 4fmz_A 63 EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYLNEDNISDISP--LANLTKMYS 136 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCE
T ss_pred hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEECcCCcccCchh--hccCCceeE
Confidence 568999999999999985533 89999999999999998854 469999999999999999875433 889999999
Q ss_pred EECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccc
Q 044133 82 LDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKL 161 (384)
Q Consensus 82 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 161 (384)
|++++|.... ....+..+++|++|++++|.+....+ +..+++|+.|++++|.+.+..+ +..+++|+.+++++|.+
T Consensus 137 L~l~~n~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l 211 (347)
T 4fmz_A 137 LNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQI 211 (347)
T ss_dssp EECTTCTTCC-CCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred EECCCCCCcc-cccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCC
Confidence 9999996553 33458899999999999999875543 7889999999999999885543 78899999999999998
Q ss_pred cCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcc
Q 044133 162 EGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKL 241 (384)
Q Consensus 162 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 241 (384)
....+ +..+++|++|++++|.+....+ +..+++|++|++++|.++.. ..+..+++|+.|++++|.+.++
T Consensus 212 ~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~----- 280 (347)
T 4fmz_A 212 TDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI----- 280 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-----
T ss_pred CCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-----
Confidence 75433 8889999999999999886533 88999999999999998764 4688999999999999988775
Q ss_pred cCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccc
Q 044133 242 DGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLS 314 (384)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~ 314 (384)
+.+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+..| +..+++|++|++++|+++
T Consensus 281 -----~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 281 -----SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -----GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred -----hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 346678999999999999998888889999999999999999997666 888999999999999986
No 29
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.2e-33 Score=271.13 Aligned_cols=326 Identities=23% Similarity=0.249 Sum_probs=230.2
Q ss_pred CCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECc
Q 044133 6 NLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLS 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 85 (384)
++++|++++|.+++..+..|.++++|++|+|++|.++.+.+++|.++++|++|++++|++....+..|.++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 68899999998888777888889999999999888887777888888999999999988887777778888899999999
Q ss_pred CCcccccCCcCCCCCCCCCEEEcCCCccccc-CCcCCcCCCCCCEEEccCCcCcccCCccccCC----------------
Q 044133 86 RNEIGGSIPSTIGHLKRLRILDLSQNKLVGP-IPSSVGPLTQLTTLNMHSNRINGSIPLEIGNL---------------- 148 (384)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~---------------- 148 (384)
+|++....+..+.++++|++|++++|.++.. .+..+..+++|+.|++++|.+.+..+..+..+
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~ 212 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 212 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCc
Confidence 8888866666788888899999988887653 45667778888888888887654332222111
Q ss_pred --------------------------------------------------------------------------------
Q 044133 149 -------------------------------------------------------------------------------- 148 (384)
Q Consensus 149 -------------------------------------------------------------------------------- 148 (384)
T Consensus 213 l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~ 292 (635)
T 4g8a_A 213 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLD 292 (635)
T ss_dssp CCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCC
T ss_pred ccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhc
Confidence
Q ss_pred -----------------------------------cccceeecccccccCCCC-------------------ccccCcCC
Q 044133 149 -----------------------------------NFLQVLGLSDNKLEGPIP-------------------STIASLVN 174 (384)
Q Consensus 149 -----------------------------------~~L~~L~l~~~~~~~~~~-------------------~~~~~~~~ 174 (384)
..++.|++.++.+..... .....+++
T Consensus 293 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~ 372 (635)
T 4g8a_A 293 YYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPS 372 (635)
T ss_dssp SCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTT
T ss_pred ccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccc
Confidence 011222222221110000 00112334
Q ss_pred CCeeecccccc--------------------------c-----------------------CC-CCccccCCCCCCEEEc
Q 044133 175 LKSLSLHYNNL--------------------------I-----------------------GP-IPSTLGHLNRLTDLDL 204 (384)
Q Consensus 175 L~~L~l~~~~~--------------------------~-----------------------~~-~~~~~~~~~~L~~L~l 204 (384)
|+.+++++|.+ . .. ....+..+++++.+++
T Consensus 373 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l 452 (635)
T 4g8a_A 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 452 (635)
T ss_dssp CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred cccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccc
Confidence 44444433221 1 00 1123344455556666
Q ss_pred cCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEec
Q 044133 205 SENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDL 284 (384)
Q Consensus 205 ~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 284 (384)
++|.+....+..+..+++++.|++++|.+.. ...+..+..+++|++|++++|++++..+..|.++++|++|++
T Consensus 453 s~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~-------~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~L 525 (635)
T 4g8a_A 453 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE-------NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 525 (635)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGG-------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccccccccccccccchhhhhhhhhhccccc-------ccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEEC
Confidence 6665555555556666666666666664321 123456777899999999999999888889999999999999
Q ss_pred CCCcCCCCCchhhcCCCCCcEEeCCCCccccccCccc----cCCCeEEcccCcCCCCC
Q 044133 285 SGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFV----RKVPHLDVSGNKFGGEI 338 (384)
Q Consensus 285 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~----~~l~~l~l~~~~~~~~~ 338 (384)
++|++.+..+..|..+++|+.|++++|++++..|..+ .+|+.+++++|++.|.+
T Consensus 526 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 526 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSG
T ss_pred CCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccC
Confidence 9999998888889999999999999999998877654 46889999999998744
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.5e-33 Score=261.79 Aligned_cols=305 Identities=32% Similarity=0.443 Sum_probs=196.9
Q ss_pred CCCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCE
Q 044133 2 GRLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHV 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 81 (384)
..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +.++++|++|++++|.+.... .+..+++|++
T Consensus 65 ~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~ 138 (466)
T 1o6v_A 65 EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID--PLKNLTNLNR 138 (466)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred hhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCCh--HHcCCCCCCE
Confidence 346677777777777764432 6677777777777776664433 667777777777777665432 2666777777
Q ss_pred EECcCCcccccCC-------------------cCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCC
Q 044133 82 LDLSRNEIGGSIP-------------------STIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIP 142 (384)
Q Consensus 82 L~l~~~~~~~~~~-------------------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 142 (384)
|++++|.+..... ..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.+..+
T Consensus 139 L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 216 (466)
T 1o6v_A 139 LELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP 216 (466)
T ss_dssp EEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred EECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc
Confidence 7777766543210 1133445555555555555432 234555566666666665554322
Q ss_pred ccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCC
Q 044133 143 LEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNF 222 (384)
Q Consensus 143 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 222 (384)
+..+++|++|++++|.+... ..+..+++|+.|++++|.+.... .+..+++|++|++++|.+....+ +..+++
T Consensus 217 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 288 (466)
T 1o6v_A 217 --LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISP--LAGLTA 288 (466)
T ss_dssp --GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred --ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch--hhhcCCCCCEEECCCCccCcccc--ccCCCc
Confidence 44556666666666655532 34556666666666666665432 25666677777777776654433 566677
Q ss_pred CCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCC
Q 044133 223 LQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPG 302 (384)
Q Consensus 223 L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 302 (384)
|+.|++++|.+.++. .+..+++|+.|++++|++++..+ +..+++|++|++++|.+.+. ..+..+++
T Consensus 289 L~~L~L~~n~l~~~~----------~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~ 354 (466)
T 1o6v_A 289 LTNLELNENQLEDIS----------PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTN 354 (466)
T ss_dssp CSEEECCSSCCSCCG----------GGGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTT
T ss_pred cCeEEcCCCcccCch----------hhcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCC
Confidence 777777777665431 25667888888888888876544 67788888888888888754 46778888
Q ss_pred CcEEeCCCCccccccC-ccccCCCeEEcccCcCCC
Q 044133 303 IHTVDLSMNNLSGGIP-VFVRKVPHLDVSGNKFGG 336 (384)
Q Consensus 303 L~~L~l~~n~~~~~~~-~~~~~l~~l~l~~~~~~~ 336 (384)
|+.|++++|++++..| ..+++++.+++++|.+++
T Consensus 355 L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 355 INWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred CCEEeCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence 9999999998887665 345678888998888876
No 31
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.1e-34 Score=275.41 Aligned_cols=327 Identities=23% Similarity=0.277 Sum_probs=224.1
Q ss_pred CCCCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCccccc-CCcccCCCCCC
Q 044133 1 MGRLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGS-IPLEIENLKVL 79 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L 79 (384)
|.++++|++|++++|.+++..+..|.++++|++|++++|.+.+..+.+|.++++|++|++++|.+... .+..+.++++|
T Consensus 46 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L 125 (549)
T 2z81_A 46 LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNL 125 (549)
T ss_dssp TSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTC
T ss_pred hhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCc
Confidence 46789999999999999988888899999999999999999977777799999999999999998753 45678899999
Q ss_pred CEEECcCCc-ccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeeccc
Q 044133 80 HVLDLSRNE-IGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSD 158 (384)
Q Consensus 80 ~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 158 (384)
++|++++|. +....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.........+..+++|++|++++
T Consensus 126 ~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~ 205 (549)
T 2z81_A 126 QTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRD 205 (549)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEES
T ss_pred cEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccC
Confidence 999999987 4544446788999999999999999888888899999999999999887644433345688899999999
Q ss_pred ccccCCC--C-ccccCcC----------------------------CCCee-----------------------------
Q 044133 159 NKLEGPI--P-STIASLV----------------------------NLKSL----------------------------- 178 (384)
Q Consensus 159 ~~~~~~~--~-~~~~~~~----------------------------~L~~L----------------------------- 178 (384)
|.+.+.. + .....++ +|+.+
T Consensus 206 n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 285 (549)
T 2z81_A 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVET 285 (549)
T ss_dssp CBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCE
T ss_pred CccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccc
Confidence 8876421 0 0011112 22222
Q ss_pred ------------------------------ecccccccCCCCcc-ccCCCCCCEEEccCCcccccC---CccCCCCCCCC
Q 044133 179 ------------------------------SLHYNNLIGPIPST-LGHLNRLTDLDLSENKLVGPI---PSSVGHLNFLQ 224 (384)
Q Consensus 179 ------------------------------~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~---~~~~~~l~~L~ 224 (384)
++++|.+.. .+.. +..+++|++|++++|.+.... +..+..+++|+
T Consensus 286 L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~-ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~ 364 (549)
T 2z81_A 286 VTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFL-VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364 (549)
T ss_dssp EEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCC-CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCC
T ss_pred ccccccccchhhhcccchhhhhhcccceEEEeccCcccc-CCHHHHhcCccccEEEccCCccccccccchhhhhccccCc
Confidence 222222221 1111 134556666666666554322 22345556666
Q ss_pred eeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCc
Q 044133 225 DLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIH 304 (384)
Q Consensus 225 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 304 (384)
.|++++|.+..++. ....+..+++|++|++++|+++ ..+..+..+++|++|++++|++.+ ++..+ .++|+
T Consensus 365 ~L~Ls~N~l~~~~~------~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~ 434 (549)
T 2z81_A 365 TLVLSQNHLRSMQK------TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLE 434 (549)
T ss_dssp EEECTTSCCCCHHH------HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCS
T ss_pred EEEccCCccccccc------chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCce
Confidence 66666665544310 0022445667777777777666 344555666677777777776652 23222 24677
Q ss_pred EEeCCCCccccccCccccCCCeEEcccCcCCCCCCC
Q 044133 305 TVDLSMNNLSGGIPVFVRKVPHLDVSGNKFGGEIPT 340 (384)
Q Consensus 305 ~L~l~~n~~~~~~~~~~~~l~~l~l~~~~~~~~~p~ 340 (384)
.|++++|.+++. +..+++|+.|++++|.++ .+|.
T Consensus 435 ~L~Ls~N~l~~~-~~~l~~L~~L~Ls~N~l~-~ip~ 468 (549)
T 2z81_A 435 VLDVSNNNLDSF-SLFLPRLQELYISRNKLK-TLPD 468 (549)
T ss_dssp EEECCSSCCSCC-CCCCTTCCEEECCSSCCS-SCCC
T ss_pred EEECCCCChhhh-cccCChhcEEECCCCccC-cCCC
Confidence 777777777653 346778888888888887 4553
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=264.01 Aligned_cols=145 Identities=27% Similarity=0.270 Sum_probs=123.2
Q ss_pred CEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCC
Q 044133 8 VHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRN 87 (384)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 87 (384)
++|++++|.++. .|..+. ++|++|++++|.+.+..+.+|.++++|++|++++|.+....+..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 689999999995 444444 89999999999999887789999999999999999999887889999999999999999
Q ss_pred cccccCCcCCCCCCCCCEEEcCCCccccc-CCcCCcCCCCCCEEEccCCcCcccCCccccCCccc--ceeecccccc
Q 044133 88 EIGGSIPSTIGHLKRLRILDLSQNKLVGP-IPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFL--QVLGLSDNKL 161 (384)
Q Consensus 88 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~ 161 (384)
.+.. ++.. .+++|++|++++|.+++. .+..+..+++|+.|++++|.+.. ..+..+++| ++|++++|.+
T Consensus 80 ~l~~-lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 80 KLVK-ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCCE-EECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTT
T ss_pred ceee-cCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccc
Confidence 9984 4444 789999999999999873 56789999999999999999875 345555666 7777777665
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1e-32 Score=262.14 Aligned_cols=314 Identities=24% Similarity=0.262 Sum_probs=219.0
Q ss_pred CCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEE
Q 044133 4 LRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLD 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 83 (384)
+...++++++++.+++ .|..+. ++|++|++++|.+.+..+.+|.++++|++|++++|.+....+..|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 4556899999999996 444343 7999999999999988888999999999999999999988888999999999999
Q ss_pred CcCCcccccCCcCCCCCCCCCEEEcCCCcccccC-CcCCcCCCCCCEEEccCCcCcccCCccccCCccc--ceeeccccc
Q 044133 84 LSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPI-PSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFL--QVLGLSDNK 160 (384)
Q Consensus 84 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~ 160 (384)
+++|.+. ..+.. .+++|++|++++|.+++.. +..+..+++|+.|++++|.+... .+..+++| ++|++++|.
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 9999998 44544 7999999999999998643 57899999999999999998753 34444444 777777776
Q ss_pred c--cCCCCccccCc------------------------------------------------------------------
Q 044133 161 L--EGPIPSTIASL------------------------------------------------------------------ 172 (384)
Q Consensus 161 ~--~~~~~~~~~~~------------------------------------------------------------------ 172 (384)
+ ....+..+..+
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 6 33333222221
Q ss_pred ---------------CCCCeeecccccccCCCCccc--------------------------------------------
Q 044133 173 ---------------VNLKSLSLHYNNLIGPIPSTL-------------------------------------------- 193 (384)
Q Consensus 173 ---------------~~L~~L~l~~~~~~~~~~~~~-------------------------------------------- 193 (384)
++|++|++++|.+.+..+..+
T Consensus 261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEES
T ss_pred CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccC
Confidence 145555555555443222221
Q ss_pred ---------cCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCc
Q 044133 194 ---------GHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNL 264 (384)
Q Consensus 194 ---------~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 264 (384)
..+++|++|++++|.++...+..+..+++|+.|++++|.+..++. .+..+..+++|++|++++|.
T Consensus 341 n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------~~~~~~~l~~L~~L~l~~N~ 414 (562)
T 3a79_B 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFK------VALMTKNMSSLETLDVSLNS 414 (562)
T ss_dssp SCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTH------HHHTTTTCTTCCEEECTTSC
T ss_pred CCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCccc------chhhhcCCCCCCEEECCCCc
Confidence 456677777777777776666777777777888887777665421 11234556677777777777
Q ss_pred ccC-CCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccCc---cccCCCeEEcccCcCC
Q 044133 265 LSG-SIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPV---FVRKVPHLDVSGNKFG 335 (384)
Q Consensus 265 ~~~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~---~~~~l~~l~l~~~~~~ 335 (384)
+++ .....+..+++|++|++++|.+.+..+..+. ++|+.|++++|.++. +|. .+++|+.+++++|.++
T Consensus 415 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCC
T ss_pred CCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCC
Confidence 765 3334456666666777776666644444332 566666666666663 332 2346666677776666
No 34
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-33 Score=269.15 Aligned_cols=309 Identities=22% Similarity=0.193 Sum_probs=260.2
Q ss_pred CCCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCE
Q 044133 2 GRLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHV 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 81 (384)
..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+....+..|.++++|++
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 151 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 151 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCE
Confidence 35789999999999999888889999999999999999999888888999999999999999998777777899999999
Q ss_pred EECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccc
Q 044133 82 LDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKL 161 (384)
Q Consensus 82 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 161 (384)
|++++|.+....+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+.. +...++|+.|++++|.+
T Consensus 152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l 223 (597)
T 3oja_B 152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSI 223 (597)
T ss_dssp EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCC
T ss_pred EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCcc
Confidence 99999999988888899999999999999998865 35667899999999998864 34557899999999988
Q ss_pred cCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcc
Q 044133 162 EGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKL 241 (384)
Q Consensus 162 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 241 (384)
...... ..++|+.|++++|.++. +..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+..++
T Consensus 224 ~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---- 294 (597)
T 3oja_B 224 NVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN---- 294 (597)
T ss_dssp CEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE----
T ss_pred cccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC----
Confidence 743322 23689999999999885 367889999999999999999888899999999999999999887653
Q ss_pred cCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccC-cc
Q 044133 242 DGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP-VF 320 (384)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~ 320 (384)
..+..+++|+.|++++|.++ ..+..+..+++|+.|++++|.+.+.. +..+++|+.|++++|++.|... ..
T Consensus 295 -----~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~~ 365 (597)
T 3oja_B 295 -----LYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRAL 365 (597)
T ss_dssp -----CSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHHH
T ss_pred -----cccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHHH
Confidence 23455799999999999998 55667788999999999999998543 6678999999999999998653 33
Q ss_pred ccCCCeEEcccCcCCC
Q 044133 321 VRKVPHLDVSGNKFGG 336 (384)
Q Consensus 321 ~~~l~~l~l~~~~~~~ 336 (384)
+..+....+.++...|
T Consensus 366 ~~~~~~~~~~~~~~~C 381 (597)
T 3oja_B 366 FRNVARPAVDDADQHC 381 (597)
T ss_dssp TTTCCTTTBCCCCCCC
T ss_pred HHHHhhhccccccccC
Confidence 3444333333443333
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.8e-32 Score=254.46 Aligned_cols=306 Identities=29% Similarity=0.398 Sum_probs=234.0
Q ss_pred CCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEE
Q 044133 4 LRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLD 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 83 (384)
++++++|+++++.++.. + .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+....+ +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 57899999999998853 3 48899999999999999986543 8999999999999999875543 88999999999
Q ss_pred CcCCcccccCCcCCCCCCCCCEEEcCCCcccccCC-------------------cCCcCCCCCCEEEccCCcCcccCCcc
Q 044133 84 LSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIP-------------------SSVGPLTQLTTLNMHSNRINGSIPLE 144 (384)
Q Consensus 84 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------------------~~l~~l~~L~~L~l~~~~~~~~~~~~ 144 (384)
+++|.+.... .+..+++|++|++++|.+..... ..+..+++|+.|++++|.+... ..
T Consensus 119 L~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~ 194 (466)
T 1o6v_A 119 LFNNQITDID--PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SV 194 (466)
T ss_dssp CCSSCCCCCG--GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GG
T ss_pred CCCCCCCCCh--HHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hh
Confidence 9999988543 38889999999999998764321 1244556677777777766543 23
Q ss_pred ccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCC
Q 044133 145 IGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQ 224 (384)
Q Consensus 145 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 224 (384)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..+++|+
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 268 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLT 268 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence 5666777777777776664432 55667777777777776643 356677788888888877765433 67777888
Q ss_pred eeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCc
Q 044133 225 DLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIH 304 (384)
Q Consensus 225 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 304 (384)
.|++++|.+..++ .+..+++|+.|++++|.+++..+ +..+++|+.|++++|++.+..+ +..+++|+
T Consensus 269 ~L~l~~n~l~~~~----------~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 269 ELKLGANQISNIS----------PLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp EEECCSSCCCCCG----------GGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred EEECCCCccCccc----------cccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 8888888766542 25568899999999998876543 7788999999999999886655 67889999
Q ss_pred EEeCCCCccccccC-ccccCCCeEEcccCcCCCCCC
Q 044133 305 TVDLSMNNLSGGIP-VFVRKVPHLDVSGNKFGGEIP 339 (384)
Q Consensus 305 ~L~l~~n~~~~~~~-~~~~~l~~l~l~~~~~~~~~p 339 (384)
.|++++|++++... ..+++|+.+++++|++++..|
T Consensus 335 ~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 335 RLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG
T ss_pred EeECCCCccCCchhhccCCCCCEEeCCCCccCccch
Confidence 99999999887522 345788999999999988776
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.3e-32 Score=240.73 Aligned_cols=285 Identities=25% Similarity=0.280 Sum_probs=165.6
Q ss_pred CCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcC
Q 044133 30 KLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLS 109 (384)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (384)
+++.++++++.++. .+..+. +.|+.|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 56666666665552 232222 456666666666665555556666666666666666665555666666666666666
Q ss_pred CCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccC--CCCccccCcCCCCeeecccccccC
Q 044133 110 QNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEG--PIPSTIASLVNLKSLSLHYNNLIG 187 (384)
Q Consensus 110 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~ 187 (384)
+|.++... ..+ .++|+.|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+..
T Consensus 109 ~n~l~~l~-~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLKELP-EKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCSBCC-SSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCCccC-hhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 66665332 222 1566666666666665555556666666666666666542 334556666666666666666653
Q ss_pred CCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccC
Q 044133 188 PIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSG 267 (384)
Q Consensus 188 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 267 (384)
. +..+ .++|++|++++|.++...+..+..+++|+.|++++|.+..+.. ..+..+++|++|++++|.++
T Consensus 186 l-~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~N~l~- 253 (330)
T 1xku_A 186 I-PQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDN--------GSLANTPHLRELHLNNNKLV- 253 (330)
T ss_dssp C-CSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECT--------TTGGGSTTCCEEECCSSCCS-
T ss_pred C-Cccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeCh--------hhccCCCCCCEEECCCCcCc-
Confidence 2 2222 2566677777666665556666666677777777666554322 23445666777777777666
Q ss_pred CCCchhcCCccccEEecCCCcCCCCCchhhcC------CCCCcEEeCCCCcccc--ccCcc---ccCCCeEEcccC
Q 044133 268 SIPSQIGKLQKLCYLDLSGNSINGKIPYQLGA------IPGIHTVDLSMNNLSG--GIPVF---VRKVPHLDVSGN 332 (384)
Q Consensus 268 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~------~~~L~~L~l~~n~~~~--~~~~~---~~~l~~l~l~~~ 332 (384)
..+..+..+++|++|++++|++.+..+..|.. .+.++.+++++|++.. ..|.. +.+++.+++++|
T Consensus 254 ~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 44455666667777777777666555554432 2566677777776653 12222 234566666655
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.4e-32 Score=241.54 Aligned_cols=285 Identities=24% Similarity=0.284 Sum_probs=193.0
Q ss_pred CCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcC
Q 044133 30 KLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLS 109 (384)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (384)
+++.++++++.++ ..|..+ .++|+.|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6777777777766 333333 2577777887777776666677777778888887777776666777777778888887
Q ss_pred CCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccC--CCCccccCcCCCCeeecccccccC
Q 044133 110 QNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEG--PIPSTIASLVNLKSLSLHYNNLIG 187 (384)
Q Consensus 110 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~ 187 (384)
+|.++.... .+. ++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+ +|+.|++++|.+..
T Consensus 111 ~n~l~~l~~-~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPP-NLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCS-SCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCccCc-ccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 777764332 222 677788888777776666667777778888887777642 445555555 77778887777765
Q ss_pred CCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccC
Q 044133 188 PIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSG 267 (384)
Q Consensus 188 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 267 (384)
. +..+ .++|++|++++|.++...+..+..+++|+.|++++|.+..+.. ..+..+++|++|++++|+++
T Consensus 187 l-~~~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~- 254 (332)
T 2ft3_A 187 I-PKDL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN--------GSLSFLPTLRELHLDNNKLS- 254 (332)
T ss_dssp C-CSSS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT--------TGGGGCTTCCEEECCSSCCC-
T ss_pred c-Cccc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh--------hHhhCCCCCCEEECCCCcCe-
Confidence 3 2222 2677788888887777766777777888888888877665432 34556778888888888777
Q ss_pred CCCchhcCCccccEEecCCCcCCCCCchhhcC------CCCCcEEeCCCCccc--cccCcc---ccCCCeEEcccCc
Q 044133 268 SIPSQIGKLQKLCYLDLSGNSINGKIPYQLGA------IPGIHTVDLSMNNLS--GGIPVF---VRKVPHLDVSGNK 333 (384)
Q Consensus 268 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~------~~~L~~L~l~~n~~~--~~~~~~---~~~l~~l~l~~~~ 333 (384)
..+..+..+++|++|++++|++.+..+..|.. .+.|+.|++++|++. +..+.. +++++.+++++|.
T Consensus 255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 55556777788888888888877665655543 356778888888776 333332 3466777777653
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-31 Score=258.79 Aligned_cols=310 Identities=25% Similarity=0.227 Sum_probs=241.9
Q ss_pred CCCCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCC
Q 044133 1 MGRLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLH 80 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 80 (384)
|+++++|++|++++|+++++.+.+|.++++|++|+|++|.++...+++|.++++|++|++++|.+....+..|.++++|+
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~ 151 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 151 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCC
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccC
Confidence 57899999999999999988888999999999999999999988788999999999999999999877777899999999
Q ss_pred EEECcCCccccc-CCcCCCCCCCCCEEEcCCCcccccCCcCCc-------------------------------------
Q 044133 81 VLDLSRNEIGGS-IPSTIGHLKRLRILDLSQNKLVGPIPSSVG------------------------------------- 122 (384)
Q Consensus 81 ~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~------------------------------------- 122 (384)
+|++++|.+... .+..+..+++|++|++++|.+++..+..+.
T Consensus 152 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l 231 (635)
T 4g8a_A 152 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 231 (635)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred eeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhh
Confidence 999999998643 466778889999999998866432211110
Q ss_pred --------------------------------------------------------------------------------
Q 044133 123 -------------------------------------------------------------------------------- 122 (384)
Q Consensus 123 -------------------------------------------------------------------------------- 122 (384)
T Consensus 232 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l 311 (635)
T 4g8a_A 232 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSF 311 (635)
T ss_dssp ESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEE
T ss_pred hcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccc
Confidence
Q ss_pred --------------CCCCCCEEEccCCcCcccCCc-------------------cccCCcccceeecccccccC------
Q 044133 123 --------------PLTQLTTLNMHSNRINGSIPL-------------------EIGNLNFLQVLGLSDNKLEG------ 163 (384)
Q Consensus 123 --------------~l~~L~~L~l~~~~~~~~~~~-------------------~~~~~~~L~~L~l~~~~~~~------ 163 (384)
....++.|++.++.+...... ....+++|+.++++.|.+..
T Consensus 312 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 391 (635)
T 4g8a_A 312 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 391 (635)
T ss_dssp EEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCH
T ss_pred cccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccccccccc
Confidence 001222333333322111000 01134556666665554321
Q ss_pred --------------------------------------------CCCccccCcCCCCeeecccccccCCCCccccCCCCC
Q 044133 164 --------------------------------------------PIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRL 199 (384)
Q Consensus 164 --------------------------------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 199 (384)
.....+..+++++.++++.|.+....+..+..++.+
T Consensus 392 ~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 392 SDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp HHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred chhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence 011234456677788888888877777888899999
Q ss_pred CEEEccCCcc-cccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCcc
Q 044133 200 TDLDLSENKL-VGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQK 278 (384)
Q Consensus 200 ~~L~l~~~~~-~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 278 (384)
+.|++++|.. ....+..|..+++|++|++++|.+..+. +..+.++++|++|+|++|++++..+..|..+++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~--------~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~ 543 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS--------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 543 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC--------TTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTT
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcC--------hHHHcCCCCCCEEECCCCcCCCCChhHHhCCCC
Confidence 9999999975 4457788999999999999999887653 356777999999999999999888889999999
Q ss_pred ccEEecCCCcCCCCCchhhcCC-CCCcEEeCCCCccccccC
Q 044133 279 LCYLDLSGNSINGKIPYQLGAI-PGIHTVDLSMNNLSGGIP 318 (384)
Q Consensus 279 L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~ 318 (384)
|+.|++++|++.+..|..+..+ ++|+.|++++|++.|.+.
T Consensus 544 L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp CCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred CCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 9999999999999999999887 689999999999998765
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.3e-31 Score=245.31 Aligned_cols=313 Identities=24% Similarity=0.242 Sum_probs=215.1
Q ss_pred CCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEE
Q 044133 3 RLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVL 82 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 82 (384)
++++|++|++++|.+++. + .+..+++|++|++++|.+++. + +..+++|++|++++|.+... .+..+++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---ecCCCCcCCEE
Confidence 468889999999988865 3 588889999999998888864 2 77888899999998888754 27788888888
Q ss_pred ECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeeccccccc
Q 044133 83 DLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLE 162 (384)
Q Consensus 83 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 162 (384)
++++|.+... + +..+++|++|++++|.+++. .+..+++|+.|++++|...+.. .+..+++|++|++++|.++
T Consensus 112 ~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 112 NCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp ECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 8888888743 2 77788888888888887754 3666777777777777433222 3556677777777777666
Q ss_pred CCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCccc
Q 044133 163 GPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLD 242 (384)
Q Consensus 163 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~ 242 (384)
.. + +..+++|+.|++++|.+... .+..+++|+.|++++|.++.+. +..+++|+.|++++|.+..++...+.
T Consensus 184 ~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~ 254 (457)
T 3bz5_A 184 EL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLS 254 (457)
T ss_dssp CC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred ee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHCC
Confidence 42 2 55666666666666666543 2556666666666666665432 55566666666666665544322221
Q ss_pred CC---------------------CCccccCCCCCcEEEccCCcccCCCCc--------hhcCCccccEEecCCCcCCCCC
Q 044133 243 GP---------------------IPPELMNCSKLTTLILGNNLLSGSIPS--------QIGKLQKLCYLDLSGNSINGKI 293 (384)
Q Consensus 243 ~~---------------------~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~n~~~~~~ 293 (384)
.. ..-.+..+++|+.|++++|...+..+. .+..+++|++|++++|++++.
T Consensus 255 ~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l- 333 (457)
T 3bz5_A 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL- 333 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC-
T ss_pred CCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc-
Confidence 10 001134567888888888865433221 256778899999999999863
Q ss_pred chhhcCCCCCcEEeCCCCccccccC--------------ccccCCCeEEcccCcCCCCCCCCCC
Q 044133 294 PYQLGAIPGIHTVDLSMNNLSGGIP--------------VFVRKVPHLDVSGNKFGGEIPTTLA 343 (384)
Q Consensus 294 ~~~l~~~~~L~~L~l~~n~~~~~~~--------------~~~~~l~~l~l~~~~~~~~~p~~~~ 343 (384)
.+..+++|+.|++++|++++... ..+..++.++++.|.++|.+|....
T Consensus 334 --~l~~l~~L~~L~l~~N~l~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 334 --DVSHNTKLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp --CCTTCTTCSEEECCSSCCCBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCB
T ss_pred --ccccCCcCcEEECCCCCCCCccccccccccCCcEEecceeeecCccccccCcEEEEcChhHh
Confidence 37889999999999999886211 0123457788899999999987653
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-30 Score=240.61 Aligned_cols=294 Identities=24% Similarity=0.253 Sum_probs=203.3
Q ss_pred CCCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCE
Q 044133 2 GRLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHV 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 81 (384)
.++++|++|++++|.+++. + +..+++|++|++++|.+++. .+.++++|++|++++|.+... + +..+++|++
T Consensus 61 ~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~---~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~ 131 (457)
T 3bz5_A 61 EKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTY 131 (457)
T ss_dssp GGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC---CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred cccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee---ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCE
Confidence 4678899999999988865 2 78889999999999988864 277888999999999988754 2 778888999
Q ss_pred EECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccc
Q 044133 82 LDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKL 161 (384)
Q Consensus 82 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 161 (384)
|++++|.+... .+..+++|++|++++|...+.. .+..+++|+.|++++|.+++.. +..+++|+.|++++|.+
T Consensus 132 L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~---l~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 132 LNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD---VSQNKLLNRLNCDTNNI 203 (457)
T ss_dssp EECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC---CTTCTTCCEEECCSSCC
T ss_pred EECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec---cccCCCCCEEECcCCcC
Confidence 99998888753 3667788888888887533222 4666777788888777776532 56667777777777776
Q ss_pred cCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCC-----------------------
Q 044133 162 EGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVG----------------------- 218 (384)
Q Consensus 162 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~----------------------- 218 (384)
+.. .+..+++|+.|++++|.+... + +..+++|+.|++++|.++......+.
T Consensus 204 ~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~ 277 (457)
T 3bz5_A 204 TKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQL 277 (457)
T ss_dssp SCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTC
T ss_pred Cee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccC
Confidence 643 366677777777777777653 2 56667777777777766654332222
Q ss_pred ------CCCCCCeeecCCCCCC-CCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCC
Q 044133 219 ------HLNFLQDLDLSNNKLE-DLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSING 291 (384)
Q Consensus 219 ------~l~~L~~L~l~~n~~~-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 291 (384)
.+++|+.|++++|... .++. .......-.+..+++|++|++++|++++. .+..+++|+.|++++|++.+
T Consensus 278 ~~~~~~~l~~L~~L~Ls~n~~l~~l~~-~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 278 IYFQAEGCRKIKELDVTHNTQLYLLDC-QAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp CEEECTTCTTCCCCCCTTCTTCCEEEC-TTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB
T ss_pred CcccccccccCCEEECCCCcccceecc-CCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC
Confidence 2344444444444321 1110 00001111356679999999999999975 38889999999999999985
Q ss_pred CCc-hh-------h---cCCCCCcEEeCCCCccccccCcccc
Q 044133 292 KIP-YQ-------L---GAIPGIHTVDLSMNNLSGGIPVFVR 322 (384)
Q Consensus 292 ~~~-~~-------l---~~~~~L~~L~l~~n~~~~~~~~~~~ 322 (384)
... .. + ..+..|..+++++|.++|.+|..+.
T Consensus 354 l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 354 FSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp CTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCB
T ss_pred ccccccccccCCcEEecceeeecCccccccCcEEEEcChhHh
Confidence 311 00 1 1235577889999999999987654
No 41
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1.3e-30 Score=231.20 Aligned_cols=289 Identities=22% Similarity=0.264 Sum_probs=245.7
Q ss_pred CCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECc
Q 044133 6 NLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLS 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 85 (384)
++++++++++.++. .|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+....+..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~-lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCS-CCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccc-cCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 78999999998884 34333 3689999999999998877789999999999999999998888899999999999999
Q ss_pred CCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcc--cCCccccCCcccceeecccccccC
Q 044133 86 RNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRING--SIPLEIGNLNFLQVLGLSDNKLEG 163 (384)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~ 163 (384)
+|.+. ..+..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99988 4444443 899999999999988777788999999999999999864 566778899999999999999875
Q ss_pred CCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccC
Q 044133 164 PIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDG 243 (384)
Q Consensus 164 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 243 (384)
. +..+. ++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+..++
T Consensus 186 l-~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp------ 256 (330)
T 1xku_A 186 I-PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVP------ 256 (330)
T ss_dssp C-CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCC------
T ss_pred C-Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCC------
Confidence 3 33332 79999999999998877888999999999999999998888888999999999999999887553
Q ss_pred CCCccccCCCCCcEEEccCCcccCCCCchhcC------CccccEEecCCCcCCC--CCchhhcCCCCCcEEeCCCCc
Q 044133 244 PIPPELMNCSKLTTLILGNNLLSGSIPSQIGK------LQKLCYLDLSGNSING--KIPYQLGAIPGIHTVDLSMNN 312 (384)
Q Consensus 244 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~n~ 312 (384)
..+..+++|++|++++|.+++..+..|.. .+.++.+++++|++.. ..|..|..++.++.+++++|+
T Consensus 257 ---~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 257 ---GGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp ---TTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ---hhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 44667899999999999999877777743 3788999999998864 567889999999999999985
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=1.4e-30 Score=231.10 Aligned_cols=288 Identities=21% Similarity=0.263 Sum_probs=245.6
Q ss_pred CCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECc
Q 044133 6 NLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLS 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 85 (384)
++++++++++.++. .|..+ .++|++|++++|.+....+.+|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 68999999999884 44433 3699999999999998878899999999999999999998888899999999999999
Q ss_pred CCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcc--cCCccccCCcccceeecccccccC
Q 044133 86 RNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRING--SIPLEIGNLNFLQVLGLSDNKLEG 163 (384)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~ 163 (384)
+|.+. ..+..+. ++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+..+ +|+.|++++|.+..
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99988 4444444 899999999999998777789999999999999999863 556667777 89999999999885
Q ss_pred CCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccC
Q 044133 164 PIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDG 243 (384)
Q Consensus 164 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 243 (384)
.+..+. ++|++|++++|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+..++
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp------ 257 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVP------ 257 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCC------
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecC------
Confidence 344333 79999999999999877788999999999999999999888888999999999999999887553
Q ss_pred CCCccccCCCCCcEEEccCCcccCCCCchhcC------CccccEEecCCCcCC--CCCchhhcCCCCCcEEeCCCCc
Q 044133 244 PIPPELMNCSKLTTLILGNNLLSGSIPSQIGK------LQKLCYLDLSGNSIN--GKIPYQLGAIPGIHTVDLSMNN 312 (384)
Q Consensus 244 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~~n~ 312 (384)
..+..+++|++|++++|.+++..+..|.. .+.++.|++++|++. +..+.+|..++.|+.+++++|+
T Consensus 258 ---~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 258 ---AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ---TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ---hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 44677899999999999999877777754 367999999999987 5678889999999999999985
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.5e-31 Score=235.05 Aligned_cols=246 Identities=29% Similarity=0.466 Sum_probs=115.4
Q ss_pred CCcEEeccCCcccc--cCCcccCCCCCCCEEECcC-CcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEE
Q 044133 54 QLTTLAIASNQING--SIPLEIENLKVLHVLDLSR-NEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTL 130 (384)
Q Consensus 54 ~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 130 (384)
.++.|++++|.+.. ..+..+.++++|++|++++ |.+....|..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444443 3344444444444444442 44433344444444444444444444443344444444444444
Q ss_pred EccCCcCcccCCccccCCcccceeecccccccCCCCccccCcC-CCCeeecccccccCCCCccccCCCCCCEEEccCCcc
Q 044133 131 NMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLV-NLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKL 209 (384)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 209 (384)
++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++ +|+.|++++|.+....+..+..++ |++|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 4444444433334444444444444444444333333344333 444444444444333333333333 44444444444
Q ss_pred cccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcC
Q 044133 210 VGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSI 289 (384)
Q Consensus 210 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 289 (384)
+...+..+ ..+++|+.|++++|.+++..+. +..+++|++|++++|.+
T Consensus 210 ~~~~~~~~--------------------------------~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l 256 (313)
T 1ogq_A 210 EGDASVLF--------------------------------GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRI 256 (313)
T ss_dssp EECCGGGC--------------------------------CTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCC
T ss_pred cCcCCHHH--------------------------------hcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcc
Confidence 33333333 3445555555555555433322 44455566666666666
Q ss_pred CCCCchhhcCCCCCcEEeCCCCccccccCcc--ccCCCeEEcccCc
Q 044133 290 NGKIPYQLGAIPGIHTVDLSMNNLSGGIPVF--VRKVPHLDVSGNK 333 (384)
Q Consensus 290 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~--~~~l~~l~l~~~~ 333 (384)
.+.+|..+..+++|+.|++++|++++.+|.. +++++.+++++|+
T Consensus 257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred cCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence 5555555666666666666666666555533 3455556666665
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=8.8e-31 Score=230.08 Aligned_cols=249 Identities=32% Similarity=0.500 Sum_probs=194.3
Q ss_pred CCCCeeeccCCcccc--cCChhhhCCCCCcEEeccC-CcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCE
Q 044133 29 SKLKILNLSSNSLVG--NVPSTLSHLTQLTTLAIAS-NQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRI 105 (384)
Q Consensus 29 ~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 105 (384)
.++++|++++|.+.+ ..+..|.++++|++|++++ |.+....|..|.++++|++|++++|.+....+..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 578889999998887 7788888999999999985 7887777888888999999999999888778888888999999
Q ss_pred EEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCc-ccceeecccccccCCCCccccCcCCCCeeeccccc
Q 044133 106 LDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLN-FLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNN 184 (384)
Q Consensus 106 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 184 (384)
|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|.+.+..+..+..++ |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999998877888888899999999999998877777888887 899999999998877788888776 9999999999
Q ss_pred ccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCc
Q 044133 185 LIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNL 264 (384)
Q Consensus 185 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 264 (384)
+....+..+..+++|+.|++++|.++...+. +..++ +|++|++++|.
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~--------------------------------~L~~L~Ls~N~ 255 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK--------------------------------NLNGLDLRNNR 255 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT--------------------------------TCCEEECCSSC
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC--------------------------------CCCEEECcCCc
Confidence 9887888888999999999999987643332 33444 45555555555
Q ss_pred ccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCc
Q 044133 265 LSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNN 312 (384)
Q Consensus 265 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 312 (384)
+++..+..+..+++|++|++++|++.+.+|.. ..+++|+.+++++|+
T Consensus 256 l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 55455555555556666666666655555544 555666666666666
No 45
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2e-30 Score=232.20 Aligned_cols=285 Identities=21% Similarity=0.215 Sum_probs=198.3
Q ss_pred hcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCE
Q 044133 26 GRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRI 105 (384)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 105 (384)
..|+.....+++++.++. .|..+. ++|++|++++|.+....+..|.++++|++|++++|.+....+..+.++++|++
T Consensus 28 ~~C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104 (353)
T ss_dssp CEECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence 345555666666666663 333332 46777777777776665556777777777777777777666666777777777
Q ss_pred EEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCC-ccccCCcccceeeccccc-ccCCCCccccCcCCCCeeecccc
Q 044133 106 LDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIP-LEIGNLNFLQVLGLSDNK-LEGPIPSTIASLVNLKSLSLHYN 183 (384)
Q Consensus 106 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~ 183 (384)
|++++|.+++..+..+..+++|+.|++++|.+..... ..+..+++|++|++++|. +....+..+..+++|++|++++|
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n 184 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS 184 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence 7777777765554456677777777777777765444 456677777777777773 55444566777777777777777
Q ss_pred cccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCC
Q 044133 184 NLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNN 263 (384)
Q Consensus 184 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 263 (384)
.+....+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.......+. .....+.++.+++.++
T Consensus 185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-----~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS-----TGETNSLIKKFTFRNV 259 (353)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-----------CCCCCCEEEEESC
T ss_pred CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc-----cccccchhhccccccc
Confidence 77766666777777788888877776544444445567788888888877665432222 1233567888888888
Q ss_pred cccCC----CCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccC
Q 044133 264 LLSGS----IPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP 318 (384)
Q Consensus 264 ~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 318 (384)
.+++. .+..+..+++|++|++++|++.+..+..|..+++|++|++++|++.+.+|
T Consensus 260 ~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 260 KITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp BCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 87652 45667889999999999999995444446899999999999999998775
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=1.5e-29 Score=222.04 Aligned_cols=260 Identities=23% Similarity=0.208 Sum_probs=155.4
Q ss_pred CCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEc
Q 044133 53 TQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNM 132 (384)
Q Consensus 53 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (384)
++|++|++++|.+....+..|.++++|++|++++|.+.... ..+..+..+++|+.|++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~----------------------~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG----------------------CCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEE----------------------EEEHHHHSCSCCCEEEC
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCccc----------------------CcccccccccccCEEEC
Confidence 34555555555554333334455555555555555443211 01122233444555555
Q ss_pred cCCcCcccCCccccCCcccceeecccccccCCCC-ccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccc
Q 044133 133 HSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIP-STIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVG 211 (384)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 211 (384)
++|.+.. .+..+..+++|++|++++|.+..... ..+..+++|++|++++|.+....+..+..+++|++|++++|.+..
T Consensus 86 s~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 86 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp CSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 5544442 22234455555555555555543322 345556666666666666655555556666777777777776654
Q ss_pred -cCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCC
Q 044133 212 -PIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSIN 290 (384)
Q Consensus 212 -~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 290 (384)
..+..+..+++|+.|++++|.+.++. +..+..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLS--------PTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEEC--------TTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcC--------HHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCc
Confidence 45566677777777777777665432 234555677788888888777666667777788888888888888
Q ss_pred CCCchhhcCCC-CCcEEeCCCCccccccC-----ccccCCCeEEcccCcCCCCCCCCCC
Q 044133 291 GKIPYQLGAIP-GIHTVDLSMNNLSGGIP-----VFVRKVPHLDVSGNKFGGEIPTTLA 343 (384)
Q Consensus 291 ~~~~~~l~~~~-~L~~L~l~~n~~~~~~~-----~~~~~l~~l~l~~~~~~~~~p~~~~ 343 (384)
+..+..+..++ +|+.|++++|++++..+ .++.+.+.+.+..+.+.|..|....
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~ 295 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 295 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGT
T ss_pred ccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhC
Confidence 77777777774 78888888888877543 3344455556666677776665544
No 47
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.7e-29 Score=221.61 Aligned_cols=287 Identities=24% Similarity=0.248 Sum_probs=191.2
Q ss_pred CEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccC--CcccCCCCCCCEEECc
Q 044133 8 VHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSI--PLEIENLKVLHVLDLS 85 (384)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~ 85 (384)
+.++++++.++.. |..+ .++|++|++++|.++......|.++++|++|++++|.+.... +..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~~i-p~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTSV-PTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcccC-CCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 5788888888844 4333 368999999999999776677899999999999999986432 3455678999999999
Q ss_pred CCcccccCCcCCCCCCCCCEEEcCCCcccccCC-cCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCC
Q 044133 86 RNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIP-SSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGP 164 (384)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 164 (384)
+|.+. ..+..+..+++|++|++++|.+++... ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+.
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 99887 445557778888888888888775544 4566777777777777776655555555566666666666555430
Q ss_pred CCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCC
Q 044133 165 IPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGP 244 (384)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 244 (384)
..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+++.
T Consensus 166 -----------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------ 216 (306)
T 2z66_A 166 -----------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT------ 216 (306)
T ss_dssp -----------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS------
T ss_pred -----------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh------
Confidence 223344445555555555555555555556666666666666665554332
Q ss_pred CCccccCCCCCcEEEccCCcccCCCCchhcCCc-cccEEecCCCcCCCCCc--hhhcCCCCCcEEeCCCCccccccCccc
Q 044133 245 IPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQ-KLCYLDLSGNSINGKIP--YQLGAIPGIHTVDLSMNNLSGGIPVFV 321 (384)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~--~~l~~~~~L~~L~l~~n~~~~~~~~~~ 321 (384)
..+..+++|+.|++++|.+++..+..+..++ +|++|++++|++.+... .....+...+.+.+..+.+.|..|..+
T Consensus 217 --~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~ 294 (306)
T 2z66_A 217 --FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDK 294 (306)
T ss_dssp --GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred --hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhh
Confidence 2344566777777777777766666666663 77788888877765422 112223344555666777777777777
Q ss_pred cCCCeEEc
Q 044133 322 RKVPHLDV 329 (384)
Q Consensus 322 ~~l~~l~l 329 (384)
......++
T Consensus 295 ~g~~~~~~ 302 (306)
T 2z66_A 295 QGMPVLSL 302 (306)
T ss_dssp TTCBGGGC
T ss_pred CCceeeee
Confidence 65544433
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.5e-30 Score=229.31 Aligned_cols=284 Identities=23% Similarity=0.199 Sum_probs=231.2
Q ss_pred CCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEE
Q 044133 4 LRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLD 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 83 (384)
|+.....+++++.++.. |..+. ++|++|++++|.++...+..|.++++|++|++++|.+....+..|.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~i-P~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNSI-PSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSSC-CTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcccc-ccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 45666788888888844 44333 5899999999999977777899999999999999999888788899999999999
Q ss_pred CcCCcccccCCcCCCCCCCCCEEEcCCCcccccCC-cCCcCCCCCCEEEccCC-cCcccCCccccCCcccceeecccccc
Q 044133 84 LSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIP-SSVGPLTQLTTLNMHSN-RINGSIPLEIGNLNFLQVLGLSDNKL 161 (384)
Q Consensus 84 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~ 161 (384)
+++|.+....+..+..+++|++|++++|.++.... ..+..+++|+.|++++| .+....+..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 99999985544558889999999999999986655 57889999999999998 46666677888999999999999999
Q ss_pred cCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccC---CCCCCCCeeecCCCCCCCCCC
Q 044133 162 EGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSV---GHLNFLQDLDLSNNKLEDLSD 238 (384)
Q Consensus 162 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~l~~L~~L~l~~n~~~~~~~ 238 (384)
....+..+..+++|++|++++|.+.......+..+++|++|++++|.++......+ .....++.++++++.+.+...
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 87778889999999999999998865444445568999999999999876544433 345678888888887654221
Q ss_pred CcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCc
Q 044133 239 NKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIP 294 (384)
Q Consensus 239 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 294 (384)
. .++..+..+++|++|++++|++++.....|..+++|++|++++|++.+..+
T Consensus 267 ~----~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 267 F----QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp H----HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred h----hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 1 123567789999999999999996666667899999999999999996654
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.8e-32 Score=254.54 Aligned_cols=332 Identities=22% Similarity=0.204 Sum_probs=243.2
Q ss_pred CCCCCCEEeccCCcCccC----CChhhhcCCCCCeeeccCCcccccCChhh-hCCC----CCcEEeccCCcccc----cC
Q 044133 3 RLRNLVHLDLSNNHLTGH----IPPTLGRLSKLKILNLSSNSLVGNVPSTL-SHLT----QLTTLAIASNQING----SI 69 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~----~L~~L~l~~~~~~~----~~ 69 (384)
.+++|++|++++|.+++. .+..+..+++|++|++++|.+.......+ ..++ +|++|++++|.+.+ ..
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 478999999999998743 34567788999999999998875444333 3354 79999999999874 33
Q ss_pred CcccCCCCCCCEEECcCCcccccCCcC-----CCCCCCCCEEEcCCCcccccC----CcCCcCCCCCCEEEccCCcCccc
Q 044133 70 PLEIENLKVLHVLDLSRNEIGGSIPST-----IGHLKRLRILDLSQNKLVGPI----PSSVGPLTQLTTLNMHSNRINGS 140 (384)
Q Consensus 70 ~~~~~~~~~L~~L~l~~~~~~~~~~~~-----~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~ 140 (384)
+..+..+++|++|++++|.+....+.. ....++|++|++++|.++... +..+..+++|+.|++++|.+.+.
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 185 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA 185 (461)
T ss_dssp HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH
Confidence 667889999999999999886433322 233568999999999987543 44556678999999999998754
Q ss_pred CCcccc-----CCcccceeecccccccCC----CCccccCcCCCCeeecccccccCCC-----CccccCCCCCCEEEccC
Q 044133 141 IPLEIG-----NLNFLQVLGLSDNKLEGP----IPSTIASLVNLKSLSLHYNNLIGPI-----PSTLGHLNRLTDLDLSE 206 (384)
Q Consensus 141 ~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~ 206 (384)
....+. ..++|++|++++|.+... .+..+..+++|++|++++|.+.... +..+..+++|++|++++
T Consensus 186 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~ 265 (461)
T 1z7x_W 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE 265 (461)
T ss_dssp HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcC
Confidence 333332 356899999999988754 3556677899999999999876432 22234588999999999
Q ss_pred Cccccc----CCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCC----CchhcCCcc
Q 044133 207 NKLVGP----IPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSI----PSQIGKLQK 278 (384)
Q Consensus 207 ~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~ 278 (384)
|.++.. .+..+..+++|++|++++|.+.+.+...+.. ......++|++|++++|.+++.. +..+..+++
T Consensus 266 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~---~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~ 342 (461)
T 1z7x_W 266 CGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE---TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF 342 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH---HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS
T ss_pred CCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH---HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC
Confidence 988753 3455667889999999999876432211211 01112368999999999888653 445567789
Q ss_pred ccEEecCCCcCCCCCchhhcC-----CCCCcEEeCCCCcccc----ccCcc---ccCCCeEEcccCcCCCC
Q 044133 279 LCYLDLSGNSINGKIPYQLGA-----IPGIHTVDLSMNNLSG----GIPVF---VRKVPHLDVSGNKFGGE 337 (384)
Q Consensus 279 L~~L~l~~n~~~~~~~~~l~~-----~~~L~~L~l~~n~~~~----~~~~~---~~~l~~l~l~~~~~~~~ 337 (384)
|++|++++|.+.+..+..+.. .++|++|++++|.+++ .++.. .++|+.+++++|++++.
T Consensus 343 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 343 LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred ccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 999999999887655544432 6789999999998885 44433 57889999999988753
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=9.6e-29 Score=214.55 Aligned_cols=236 Identities=21% Similarity=0.218 Sum_probs=138.2
Q ss_pred CCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeec
Q 044133 77 KVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGL 156 (384)
Q Consensus 77 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 156 (384)
++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------------------- 91 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA-------------------- 91 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT--------------------
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC--------------------
Confidence 455555555555554444445555555555555555544444444445555555555443
Q ss_pred ccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCC
Q 044133 157 SDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDL 236 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 236 (384)
.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+..+
T Consensus 92 ---~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 92 ---QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp ---TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred ---CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 03333344444555555555555555544444555566666666666666555555566666666666666665544
Q ss_pred CCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccc
Q 044133 237 SDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGG 316 (384)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~ 316 (384)
+. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+.
T Consensus 169 ~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 169 PE--------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp CT--------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred CH--------HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 32 2344466777777777777766667777777777777777777766666677777888888888877765
Q ss_pred cCc--cccCCCeEEcccCcCCCCCCCCCC
Q 044133 317 IPV--FVRKVPHLDVSGNKFGGEIPTTLA 343 (384)
Q Consensus 317 ~~~--~~~~l~~l~l~~~~~~~~~p~~~~ 343 (384)
.+. ....++.+..+.+.+.|..|....
T Consensus 241 ~~~~~~~~~l~~~~~~~~~~~c~~p~~l~ 269 (285)
T 1ozn_A 241 CRARPLWAWLQKFRGSSSEVPCSLPQRLA 269 (285)
T ss_dssp GGGHHHHHHHHHCCSEECCCBEEESGGGT
T ss_pred CCcHHHHHHHHhcccccCccccCCchHhC
Confidence 542 233444455566666666665443
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.9e-32 Score=254.39 Aligned_cols=329 Identities=18% Similarity=0.141 Sum_probs=251.9
Q ss_pred CCCCCEEeccCCcCccCCChh-hhcCCCCCeeeccCCccccc----CChhhhCCCCCcEEeccCCcccccCCccc-CCCC
Q 044133 4 LRNLVHLDLSNNHLTGHIPPT-LGRLSKLKILNLSSNSLVGN----VPSTLSHLTQLTTLAIASNQINGSIPLEI-ENLK 77 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~ 77 (384)
.++|++|+++++.+++..... +..+++|++|++++|.+... .+.++..+++|++|++++|.+.+..+..+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 467899999999987654443 78899999999999998743 35667888999999999999865333222 2334
Q ss_pred ----CCCEEECcCCcccc----cCCcCCCCCCCCCEEEcCCCcccccCCcC-----CcCCCCCCEEEccCCcCcccC---
Q 044133 78 ----VLHVLDLSRNEIGG----SIPSTIGHLKRLRILDLSQNKLVGPIPSS-----VGPLTQLTTLNMHSNRINGSI--- 141 (384)
Q Consensus 78 ----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-----l~~l~~L~~L~l~~~~~~~~~--- 141 (384)
+|++|++++|.+.. ..+..+..+++|++|++++|.+....... ....++|+.|++++|.++...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 79999999999874 34677889999999999999986433222 233568999999999987643
Q ss_pred -CccccCCcccceeecccccccCCCCcccc-----CcCCCCeeecccccccCC----CCccccCCCCCCEEEccCCcccc
Q 044133 142 -PLEIGNLNFLQVLGLSDNKLEGPIPSTIA-----SLVNLKSLSLHYNNLIGP----IPSTLGHLNRLTDLDLSENKLVG 211 (384)
Q Consensus 142 -~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~ 211 (384)
+..+..+++|++|++++|.+.+.....+. ..++|+.|++++|.+... .+..+..+++|++|++++|.+.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 34566779999999999988754444443 356999999999988754 24566778999999999998765
Q ss_pred cC-----CccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcC-----CccccE
Q 044133 212 PI-----PSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGK-----LQKLCY 281 (384)
Q Consensus 212 ~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~ 281 (384)
.. +..+..+++|++|++++|.+++.+...+ +..+..+++|++|++++|.+++..+..+.. .++|++
T Consensus 242 ~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l----~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 317 (461)
T 1z7x_W 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL----CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLES 317 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH----HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred HHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH----HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence 32 2233468899999999998776322112 245666899999999999987655444432 369999
Q ss_pred EecCCCcCCCC----CchhhcCCCCCcEEeCCCCccccccCcc--------ccCCCeEEcccCcCCC
Q 044133 282 LDLSGNSINGK----IPYQLGAIPGIHTVDLSMNNLSGGIPVF--------VRKVPHLDVSGNKFGG 336 (384)
Q Consensus 282 L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~~--------~~~l~~l~l~~~~~~~ 336 (384)
|++++|.+.+. ++..+..+++|++|++++|.+++..+.. ..+++.+++++|.+++
T Consensus 318 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~ 384 (461)
T 1z7x_W 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 384 (461)
T ss_dssp EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCCh
Confidence 99999999866 4566778899999999999988754322 3589999999999985
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=7.1e-28 Score=221.95 Aligned_cols=229 Identities=25% Similarity=0.249 Sum_probs=114.2
Q ss_pred CCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEc
Q 044133 53 TQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNM 132 (384)
Q Consensus 53 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (384)
++++.|++++|.+....+..|.++++|++|++++|.+....+..+.++++|++|++++|.++...+..+..+++|+.|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34555555555555444455555555555555555555444445555555555555555555444444555555555555
Q ss_pred cCCcCcccCCccccCCcccceeeccccc-ccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccc
Q 044133 133 HSNRINGSIPLEIGNLNFLQVLGLSDNK-LEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVG 211 (384)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 211 (384)
++|.+....+..+..+++|++|++++|. +.......+..+++|+.|++++|.+... + .+..+++|++|++++|.++.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-P-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-C-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-c-ccCCCcccCEEECCCCccCc
Confidence 5555554444445555555555555432 2222223344445555555555444422 1 23444444444444444444
Q ss_pred cCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCC
Q 044133 212 PIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSING 291 (384)
Q Consensus 212 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 291 (384)
..+..|.. +++|+.|++++|.+++..+..|..+++|++|++++|++.+
T Consensus 222 ~~~~~~~~--------------------------------l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 222 IRPGSFQG--------------------------------LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp ECTTTTTT--------------------------------CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred cChhhhcc--------------------------------CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 44444444 4455555555555554444445555555555555555554
Q ss_pred CCchhhcCCCCCcEEeCCCCcccc
Q 044133 292 KIPYQLGAIPGIHTVDLSMNNLSG 315 (384)
Q Consensus 292 ~~~~~l~~~~~L~~L~l~~n~~~~ 315 (384)
..+..+..+++|+.|++++|++.+
T Consensus 270 ~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 270 LPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCTTTTSSCTTCCEEECCSSCEEC
T ss_pred cChhHhccccCCCEEEcCCCCccC
Confidence 444444555555555555555544
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=8.3e-28 Score=222.25 Aligned_cols=231 Identities=21% Similarity=0.189 Sum_probs=134.7
Q ss_pred CCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeec
Q 044133 77 KVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGL 156 (384)
Q Consensus 77 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 156 (384)
+++++|++++|.+....+..+..+++|++|++++|.+....+..|.++++|+.|++++|.+....+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 45555555555555444555555555555555555555555555555555555555555555444444555555555555
Q ss_pred ccccccCCCCccccCcCCCCeeecccc-cccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCC
Q 044133 157 SDNKLEGPIPSTIASLVNLKSLSLHYN-NLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLED 235 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 235 (384)
++|.+....+..+..+++|+.|++++| .+.......+..+++|+.|++++|.++.. ..+..+++|+.|++++|.+..
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcc
Confidence 555555444445555556666666553 23323333455566666666666665543 235556666666666665544
Q ss_pred CCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCcccc
Q 044133 236 LSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSG 315 (384)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 315 (384)
+. +..+..+++|+.|++++|.+++..+..|..+++|++|++++|++.+..+..+..+++|+.|++++|++.+
T Consensus 233 ~~--------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 233 IR--------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp EC--------GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred cC--------cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence 32 2345556666777777766666666666666777777777777665555666666777777777777665
Q ss_pred cc
Q 044133 316 GI 317 (384)
Q Consensus 316 ~~ 317 (384)
.+
T Consensus 305 dC 306 (452)
T 3zyi_A 305 DC 306 (452)
T ss_dssp ST
T ss_pred CC
Confidence 44
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=1.2e-26 Score=213.69 Aligned_cols=293 Identities=25% Similarity=0.291 Sum_probs=134.9
Q ss_pred CCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECc
Q 044133 6 NLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLS 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 85 (384)
+|++|++++|.+++ .+. .+++|++|++++|.+.+... + .++|++|++++|.+.. .+ .+.++++|++|+++
T Consensus 92 ~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~l~~--~--~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 92 HLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp TCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCCS--C--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECC
T ss_pred CCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCcccC--C--CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECC
Confidence 45555555555543 221 12455555555554442110 0 1456666666665553 33 35566666666666
Q ss_pred CCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCC
Q 044133 86 RNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPI 165 (384)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 165 (384)
+|.+.. .+.. ..+|++|++++|.+++. + .+..+++|+.|++++|.+.+.. . ..++|++|++++|.+. ..
T Consensus 162 ~N~l~~-lp~~---~~~L~~L~L~~n~l~~l-~-~~~~l~~L~~L~l~~N~l~~l~-~---~~~~L~~L~l~~n~l~-~l 230 (454)
T 1jl5_A 162 NNSLKK-LPDL---PPSLEFIAAGNNQLEEL-P-ELQNLPFLTAIYADNNSLKKLP-D---LPLSLESIVAGNNILE-EL 230 (454)
T ss_dssp SSCCSC-CCCC---CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCS-SC
T ss_pred CCcCcc-cCCC---cccccEEECcCCcCCcC-c-cccCCCCCCEEECCCCcCCcCC-C---CcCcccEEECcCCcCC-cc
Confidence 665552 2222 23566666666665542 2 3555666666666666655321 1 1135666666666555 23
Q ss_pred CccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCc--c--
Q 044133 166 PSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNK--L-- 241 (384)
Q Consensus 166 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~-- 241 (384)
+ .+..+++|++|++++|.+... +. .+++|+.|++++|.++... . .+++|+.|++++|.+..++... +
T Consensus 231 p-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~~l~-~---~~~~L~~L~ls~N~l~~l~~~~~~L~~ 301 (454)
T 1jl5_A 231 P-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLTDLP-E---LPQSLTFLDVSENIFSGLSELPPNLYY 301 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSEESCCCTTCCE
T ss_pred c-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCcccccC-c---ccCcCCEEECcCCccCcccCcCCcCCE
Confidence 3 255666666666666655532 11 1355666666666554321 1 1245666666666554432100 0
Q ss_pred ---cCCCCccccCC-CCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCcccc--
Q 044133 242 ---DGPIPPELMNC-SKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSG-- 315 (384)
Q Consensus 242 ---~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~-- 315 (384)
...-...+..+ ++|++|++++|++++ .+. .+++|++|++++|.+. .+|. .+++|++|++++|++++
T Consensus 302 L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~ 373 (454)
T 1jl5_A 302 LNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA---LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFP 373 (454)
T ss_dssp EECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCC
T ss_pred EECcCCcCCcccCCcCcCCEEECCCCcccc-ccc---cCCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCC
Confidence 00000001111 355666666665553 222 1356666666666665 3333 34566666666666665
Q ss_pred ccCccc----------------cCCCeEEcccCcCCC
Q 044133 316 GIPVFV----------------RKVPHLDVSGNKFGG 336 (384)
Q Consensus 316 ~~~~~~----------------~~l~~l~l~~~~~~~ 336 (384)
.+|..+ .+|+.+++++|++++
T Consensus 374 ~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 374 DIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLRE 410 (454)
T ss_dssp CCCTTCCEEECCC------------------------
T ss_pred CChHHHHhhhhcccccccccccCcCCEEECCCCcCCc
Confidence 444332 445666666666665
No 55
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=5.1e-27 Score=216.13 Aligned_cols=296 Identities=25% Similarity=0.330 Sum_probs=156.2
Q ss_pred CCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEEC
Q 044133 5 RNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDL 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 84 (384)
++|++|++++|++++... + .++|++|++++|.+++ .+ .|.++++|++|++++|.+.. .+.. .++|++|++
T Consensus 111 ~~L~~L~l~~n~l~~l~~--~--~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSD--L--PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCCSCCCS--C--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred CCCcEEECCCCccCcccC--C--CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEEC
Confidence 567777777777764321 1 1577777777777764 34 47777777777777777663 2322 246777777
Q ss_pred cCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCC
Q 044133 85 SRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGP 164 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 164 (384)
++|.+.. .+ .+..+++|++|++++|.+++. +.. .++|+.|++++|.+... + .+..+++|++|++++|.+..
T Consensus 181 ~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~~---~~~L~~L~l~~n~l~~l-p-~~~~l~~L~~L~l~~N~l~~- 251 (454)
T 1jl5_A 181 GNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PDL---PLSLESIVAGNNILEEL-P-ELQNLPFLTTIYADNNLLKT- 251 (454)
T ss_dssp CSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CCC---CTTCCEEECCSSCCSSC-C-CCTTCTTCCEEECCSSCCSS-
T ss_pred cCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CCC---cCcccEEECcCCcCCcc-c-ccCCCCCCCEEECCCCcCCc-
Confidence 7777664 33 466777777777777766542 211 24666777777666632 2 35666667777776666653
Q ss_pred CCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccC--Ccc-------------CCCC-CCCCeeec
Q 044133 165 IPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPI--PSS-------------VGHL-NFLQDLDL 228 (384)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~-------------~~~l-~~L~~L~l 228 (384)
.+. ..++|+.|++++|.+... +. .+++|++|++++|.++... +.. +..+ ++|+.|++
T Consensus 252 l~~---~~~~L~~L~l~~N~l~~l-~~---~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~L 324 (454)
T 1jl5_A 252 LPD---LPPSLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNV 324 (454)
T ss_dssp CCS---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEEC
T ss_pred ccc---cccccCEEECCCCccccc-Cc---ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEEC
Confidence 222 124566666666655432 11 1244555555555443311 000 1112 36777777
Q ss_pred CCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCC--CCchhhcCC------
Q 044133 229 SNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSING--KIPYQLGAI------ 300 (384)
Q Consensus 229 ~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~l~~~------ 300 (384)
++|.+..++. .+++|++|++++|++++. +. .+++|++|++++|++.+ .+|..+..+
T Consensus 325 s~N~l~~lp~------------~~~~L~~L~L~~N~l~~l-p~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~ 388 (454)
T 1jl5_A 325 SNNKLIELPA------------LPPRLERLIASFNHLAEV-PE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL 388 (454)
T ss_dssp CSSCCSCCCC------------CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--
T ss_pred CCCccccccc------------cCCcCCEEECCCCccccc-cc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccc
Confidence 7776654322 147999999999999854 33 46899999999999998 678887776
Q ss_pred -------CCCcEEeCCCCccccccCccccCCCeEEcccCcCCCCCCCCCC
Q 044133 301 -------PGIHTVDLSMNNLSGGIPVFVRKVPHLDVSGNKFGGEIPTTLA 343 (384)
Q Consensus 301 -------~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~~~~~~~~p~~~~ 343 (384)
++|+.|++++|++++. |..+.+++.+.+.+|.+.+..|....
T Consensus 389 ~~i~~~~~~L~~L~ls~N~l~~~-~~iP~sl~~L~~~~~~~~~~~~~~~~ 437 (454)
T 1jl5_A 389 AEVPELPQNLKQLHVETNPLREF-PDIPESVEDLRMNSERVVDPYEFAHE 437 (454)
T ss_dssp --------------------------------------------------
T ss_pred cccccccCcCCEEECCCCcCCcc-ccchhhHhheeCcCcccCCccccCHH
Confidence 8899999999999972 33345667777888888887765543
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.5e-27 Score=220.60 Aligned_cols=248 Identities=21% Similarity=0.219 Sum_probs=208.3
Q ss_pred CCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECc
Q 044133 6 NLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLS 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 85 (384)
..+.+++++..++. .|..+. +++++|++++|.++...+..|.++++|+.|++++|.+....+..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 34678888887774 343333 589999999999988888889999999999999999988888888999999999999
Q ss_pred CCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccC-CcCcccCCccccCCcccceeecccccccCC
Q 044133 86 RNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHS-NRINGSIPLEIGNLNFLQVLGLSDNKLEGP 164 (384)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 164 (384)
+|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++ +.+.......+..+++|++|++++|.+...
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9998866667788899999999999999877777888999999999998 455555556788899999999999988754
Q ss_pred CCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCC
Q 044133 165 IPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGP 244 (384)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 244 (384)
..+..+++|+.|++++|.+....+..|..+++|+.|++++|.++...+..|..+++|+.|++++|.+..++.
T Consensus 212 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------ 283 (452)
T 3zyi_A 212 --PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH------ 283 (452)
T ss_dssp --CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT------
T ss_pred --ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh------
Confidence 357788899999999999988878889999999999999999988888889999999999999998876654
Q ss_pred CCccccCCCCCcEEEccCCccc
Q 044133 245 IPPELMNCSKLTTLILGNNLLS 266 (384)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~~~~~ 266 (384)
..+..+++|+.|++++|.+.
T Consensus 284 --~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 284 --DLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp --TSSTTCTTCCEEECCSSCEE
T ss_pred --HHhccccCCCEEEccCCCcC
Confidence 34556789999999998765
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.7e-27 Score=219.39 Aligned_cols=248 Identities=20% Similarity=0.239 Sum_probs=203.6
Q ss_pred CCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECc
Q 044133 6 NLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLS 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 85 (384)
..+.+++++..++. .|..+. +++++|++++|.+....+..|.++++|++|++++|.+....+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLRE-VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSS-CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCc-CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 35678888887774 343333 588999999999888777888999999999999998887777888889999999999
Q ss_pred CCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCC-cCcccCCccccCCcccceeecccccccCC
Q 044133 86 RNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSN-RINGSIPLEIGNLNFLQVLGLSDNKLEGP 164 (384)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 164 (384)
+|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++| .+.......+..+++|++|++++|.+...
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 99888666667888899999999999988777778888999999999884 45555556788889999999999988743
Q ss_pred CCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCC
Q 044133 165 IPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGP 244 (384)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 244 (384)
+ .+..+++|+.|++++|.+....+..|..+++|++|++++|.++...+..|..+++|+.|++++|.+..++.
T Consensus 201 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~------ 272 (440)
T 3zyj_A 201 -P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH------ 272 (440)
T ss_dssp -C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT------
T ss_pred -c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh------
Confidence 3 47788899999999998887778888889999999999999888888888899999999999998876654
Q ss_pred CCccccCCCCCcEEEccCCccc
Q 044133 245 IPPELMNCSKLTTLILGNNLLS 266 (384)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~~~~~ 266 (384)
..+..+++|+.|++++|.+.
T Consensus 273 --~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 273 --DLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp --TTTSSCTTCCEEECCSSCEE
T ss_pred --hHhccccCCCEEEcCCCCcc
Confidence 34556789999999998765
No 58
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=8e-28 Score=208.74 Aligned_cols=256 Identities=23% Similarity=0.215 Sum_probs=172.6
Q ss_pred CeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCC
Q 044133 32 KILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQN 111 (384)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (384)
++++.+++.++. .|..+ .++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 678888887774 34333 468999999999999887788999999999999999999777889999999999999999
Q ss_pred c-ccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCC
Q 044133 112 K-LVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIP 190 (384)
Q Consensus 112 ~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 190 (384)
. +....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 170 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence 7 776667788888999999999988887666667777777777777777665544455556666666666665554444
Q ss_pred ccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCC
Q 044133 191 STLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIP 270 (384)
Q Consensus 191 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 270 (384)
..+..+++|++|++++|.++...+..+.. +++|+.|++++|.+++..+
T Consensus 171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------------------------l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRD--------------------------------LGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTT--------------------------------CTTCCEEECCSSCCSCCCH
T ss_pred HHhcCccccCEEECCCCcccccCHhHccC--------------------------------cccccEeeCCCCcCCcCCH
Confidence 44555555555555555544444444444 4555555555555554444
Q ss_pred chhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccCccccC
Q 044133 271 SQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFVRK 323 (384)
Q Consensus 271 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~ 323 (384)
..+..+++|++|++++|++....+.. .-...++.+..+.+.+.+..|..+..
T Consensus 219 ~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 219 EALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp HHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTT
T ss_pred HHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCC
Confidence 45555666666666666655332211 00112333445556666666655543
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.2e-27 Score=207.28 Aligned_cols=234 Identities=23% Similarity=0.335 Sum_probs=122.5
Q ss_pred CCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEEC
Q 044133 5 RNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDL 84 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 84 (384)
+++++|++++|.++ ..+..+.++++|++|++++|.+. ..+..+.++++|++|++++|.+. ..+..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 44555555555554 23333444555555555555554 44444455555555555555544 33444445555555555
Q ss_pred cCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCC
Q 044133 85 SRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGP 164 (384)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 164 (384)
++|+.....+..+.. . .....+..+++|+.|++++|.++ ..+..+..+++|++|++++|.+..
T Consensus 158 ~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~- 220 (328)
T 4fcg_A 158 RACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220 (328)
T ss_dssp EEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-
T ss_pred CCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-
Confidence 554433333333321 0 00001223556666666666555 334445566666666666666553
Q ss_pred CCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCC
Q 044133 165 IPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGP 244 (384)
Q Consensus 165 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 244 (384)
.+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+. +.
T Consensus 221 l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~--------~~ 292 (328)
T 4fcg_A 221 LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL--------SR 292 (328)
T ss_dssp CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC--------CC
T ss_pred CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCch--------hh
Confidence 3344556666666666666555555555666666666666666655555555666666666666665432 23
Q ss_pred CCccccCCCCCcEEEccCCccc
Q 044133 245 IPPELMNCSKLTTLILGNNLLS 266 (384)
Q Consensus 245 ~~~~~~~~~~L~~L~l~~~~~~ 266 (384)
+|..+..+++|+.+++..+.+.
T Consensus 293 iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCGGGGGSCTTCEEECCGGGSC
T ss_pred ccHHHhhccCceEEeCCHHHHH
Confidence 4455666666666666655443
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1.2e-28 Score=217.15 Aligned_cols=237 Identities=23% Similarity=0.223 Sum_probs=100.1
Q ss_pred CCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEE
Q 044133 51 HLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTL 130 (384)
Q Consensus 51 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 130 (384)
.+++|++|++++|.+....+..|..+++|++|++++|.+....+ +..+++|++|++++|.+++.. ..++|+.|
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L 104 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence 33444444444444443333344444444444444444432211 344444444444444443221 12444444
Q ss_pred EccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccc-cCCCCCCEEEccCCcc
Q 044133 131 NMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTL-GHLNRLTDLDLSENKL 209 (384)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~ 209 (384)
++++|.+....+. .+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+ ..+++|++|++++|.+
T Consensus 105 ~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 4444444432211 23344455555544443333344444444555554444443322222 2344555555555544
Q ss_pred cccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcC
Q 044133 210 VGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSI 289 (384)
Q Consensus 210 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~ 289 (384)
+.... ...+++|++|++++|.+..++ ..+..+++|+.|++++|.++ ..+..+..+++|+.|++++|++
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~l~---------~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFMG---------PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEEC---------GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred ccccc--ccccccCCEEECCCCcCCcch---------hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence 43311 112444444444444443321 12333444455555544444 2233344444555555555544
Q ss_pred C-CCCchhhcCCCCCcEEeCC
Q 044133 290 N-GKIPYQLGAIPGIHTVDLS 309 (384)
Q Consensus 290 ~-~~~~~~l~~~~~L~~L~l~ 309 (384)
. +..+..+..++.|+.++++
T Consensus 250 ~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 250 HCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp BHHHHHHHHHTCHHHHHHHHH
T ss_pred cCcCHHHHHhccccceEEECC
Confidence 4 3334444444444444444
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.5e-28 Score=215.03 Aligned_cols=263 Identities=23% Similarity=0.223 Sum_probs=214.8
Q ss_pred CCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcC
Q 044133 7 LVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSR 86 (384)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 86 (384)
++..+++.+.+.......+..+++|++|++++|.+++..+..|.++++|++|++++|.+....+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 3445555555554444556678899999999999998877899999999999999999875543 88999999999999
Q ss_pred CcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCC
Q 044133 87 NEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIP 166 (384)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 166 (384)
|.+.... ..++|++|++++|.+++..+.. +++|+.|++++|.+....+..+..+++|++|++++|.+....+
T Consensus 90 n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 90 NYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred Ccccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 9987432 3489999999999998665443 6789999999999998777788899999999999999887655
Q ss_pred ccc-cCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCC
Q 044133 167 STI-ASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPI 245 (384)
Q Consensus 167 ~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 245 (384)
..+ ..+++|++|++++|.+... .....+++|++|++++|.++...+ .+..+++|+.|++++|.+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~~l~-------- 230 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIE-------- 230 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEEC--------
T ss_pred HHHhhccCcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCcccchh--------
Confidence 655 4689999999999998755 233458999999999999986554 4888999999999999987653
Q ss_pred CccccCCCCCcEEEccCCccc-CCCCchhcCCccccEEecCCC-cCCC
Q 044133 246 PPELMNCSKLTTLILGNNLLS-GSIPSQIGKLQKLCYLDLSGN-SING 291 (384)
Q Consensus 246 ~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n-~~~~ 291 (384)
..+..+++|+.|++++|.++ +..+..+..++.|+.++++++ .+.+
T Consensus 231 -~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 231 -KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp -TTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred -hHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccC
Confidence 34566899999999999998 667778889999999999855 3443
No 62
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=2.3e-26 Score=203.09 Aligned_cols=225 Identities=23% Similarity=0.351 Sum_probs=128.4
Q ss_pred CCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeec
Q 044133 77 KVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGL 156 (384)
Q Consensus 77 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 156 (384)
+.+++|+++++.+. .++..+..+++|++|++++|.++ ..+..+..+++|+.|++++|.+. ..+..+..+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 33444444444443 33333334444444444444444 33333444444444444444444 22334444444444444
Q ss_pred ccccccCCCCcc---------ccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeee
Q 044133 157 SDNKLEGPIPST---------IASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLD 227 (384)
Q Consensus 157 ~~~~~~~~~~~~---------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 227 (384)
++|...+..+.. +..+++|+.|++++|.+. ..+..+..+++|++|++++|.++.. +..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCC-CGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcC-chhhccCCCCCEEE
Confidence 444433333333 334667777777776666 4455566677777777777766633 33466667777777
Q ss_pred cCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEe
Q 044133 228 LSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVD 307 (384)
Q Consensus 228 l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 307 (384)
+++|.+.. ..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.+|..+..+++|+.++
T Consensus 236 Ls~n~~~~--------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~ 307 (328)
T 4fcg_A 236 LRGCTALR--------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307 (328)
T ss_dssp CTTCTTCC--------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEE
T ss_pred CcCCcchh--------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEe
Confidence 77765432 2234555667777777777777666676777777777777777777777777777777777777
Q ss_pred CCCCccc
Q 044133 308 LSMNNLS 314 (384)
Q Consensus 308 l~~n~~~ 314 (384)
+..+.+.
T Consensus 308 l~~~~~~ 314 (328)
T 4fcg_A 308 VPPHLQA 314 (328)
T ss_dssp CCGGGSC
T ss_pred CCHHHHH
Confidence 7766544
No 63
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2.1e-25 Score=211.57 Aligned_cols=267 Identities=24% Similarity=0.224 Sum_probs=215.3
Q ss_pred CCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECc
Q 044133 6 NLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLS 85 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 85 (384)
++++|+++++.++. .|..+. ++|++|++++|.++.. +. .+++|++|++++|.+... +. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~~-lp~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLTT-LPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCSC-CCSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcCc-cChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEECc
Confidence 58999999999984 454443 7999999999998843 33 578999999999998744 33 67999999999
Q ss_pred CCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCC
Q 044133 86 RNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPI 165 (384)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 165 (384)
+|.+.. .+. .+++|++|++++|.++.+. . .+++|+.|++++|.+..... ..++|+.|++++|.+...
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l- 176 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTSLP-V---LPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTSL- 176 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCcCC-C---CCCCCCEEECcCCcCCCcCC----ccCCCCEEECCCCCCCCC-
Confidence 999884 333 5689999999999988543 2 24899999999999885432 357899999999998853
Q ss_pred CccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCC
Q 044133 166 PSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPI 245 (384)
Q Consensus 166 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 245 (384)
+ ..+++|+.|++++|.+.... . .+++|+.|++++|.++.+.. .+++|+.|++++|.+..++
T Consensus 177 ~---~~~~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp-------- 237 (622)
T 3g06_A 177 P---MLPSGLQELSVSDNQLASLP-T---LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP-------- 237 (622)
T ss_dssp C---CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC--------
T ss_pred c---ccCCCCcEEECCCCCCCCCC-C---ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC--------
Confidence 3 45689999999999987532 2 35899999999999885432 3578999999999888754
Q ss_pred CccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccCccccCC
Q 044133 246 PPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFVRKV 324 (384)
Q Consensus 246 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l 324 (384)
..+++|+.|++++|.+++.. . .+++|+.|++++|++. .+|..+..+++|+.|++++|++++..+..+..+
T Consensus 238 ----~~l~~L~~L~Ls~N~L~~lp-~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 238 ----VLPSELKELMVSGNRLTSLP-M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp ----CCCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred ----CCCCcCcEEECCCCCCCcCC-c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 23579999999999998543 3 5689999999999999 778889999999999999999998877655433
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=3.7e-27 Score=207.09 Aligned_cols=203 Identities=24% Similarity=0.260 Sum_probs=114.8
Q ss_pred CCCCCEEEcCCCcccccCCcCC--cCCCCCCEEEccCCcCcccCCccccCC-----cccceeecccccccCCCCccccCc
Q 044133 100 LKRLRILDLSQNKLVGPIPSSV--GPLTQLTTLNMHSNRINGSIPLEIGNL-----NFLQVLGLSDNKLEGPIPSTIASL 172 (384)
Q Consensus 100 l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~ 172 (384)
+++|++|++++|.+++..+..+ ..+++|+.|++++|.+.+. +..+..+ ++|++|++++|.+....+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 4445555555554444333332 4455555555555555443 3333333 555555555555554444555555
Q ss_pred CCCCeeecccccccCC--CCcc--ccCCCCCCEEEccCCcccc---cCCccCCCCCCCCeeecCCCCCCCCCCCcccCCC
Q 044133 173 VNLKSLSLHYNNLIGP--IPST--LGHLNRLTDLDLSENKLVG---PIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPI 245 (384)
Q Consensus 173 ~~L~~L~l~~~~~~~~--~~~~--~~~~~~L~~L~l~~~~~~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 245 (384)
++|++|++++|.+.+. .+.. +..+++|++|++++|.++. .....+..+++|+.|++++|.+.....
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------- 245 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG------- 245 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCC-------
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccc-------
Confidence 5666666665554321 1111 2456666666666666552 222233455677777777776655321
Q ss_pred CccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCcccc
Q 044133 246 PPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSG 315 (384)
Q Consensus 246 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 315 (384)
...+..+++|++|++++|.++ ..+..+. ++|++|++++|++.+. |. +..+++|++|++++|++++
T Consensus 246 ~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 246 APSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 022333567777888777777 4444444 6788888888888755 44 7778888888888888765
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=7.1e-25 Score=189.22 Aligned_cols=209 Identities=23% Similarity=0.251 Sum_probs=125.7
Q ss_pred CCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeec
Q 044133 77 KVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGL 156 (384)
Q Consensus 77 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 156 (384)
++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666666666666544445666666666666666665555555555666666666666555444444555555555555
Q ss_pred ccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCccccc-CCccCCCCCCCCeeecCCCCCCC
Q 044133 157 SDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGP-IPSSVGHLNFLQDLDLSNNKLED 235 (384)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~n~~~~ 235 (384)
++|.+... .+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+..
T Consensus 108 ~~n~l~~~------------------------~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 108 VETNLASL------------------------ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TTSCCCCS------------------------TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCCcccc------------------------CchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 55544433 333344455555555555554432 24455555566666666665544
Q ss_pred CCCCcccCCCCccccCCCCCc----EEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCC
Q 044133 236 LSDNKLDGPIPPELMNCSKLT----TLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMN 311 (384)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 311 (384)
++. ..+..+++|+ .|++++|.+++..+..+.. .+|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 164 ~~~--------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 164 IYC--------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp ECG--------GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCH--------HHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCC
Confidence 322 1222233343 7788888877555554443 47888888888888666667788899999999999
Q ss_pred ccccccC
Q 044133 312 NLSGGIP 318 (384)
Q Consensus 312 ~~~~~~~ 318 (384)
++++.++
T Consensus 235 ~~~c~c~ 241 (276)
T 2z62_A 235 PWDCSCP 241 (276)
T ss_dssp CBCCCTT
T ss_pred cccccCC
Confidence 9888765
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=8.2e-27 Score=204.84 Aligned_cols=250 Identities=24% Similarity=0.274 Sum_probs=195.9
Q ss_pred hhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccc-cCCcccC-------CCCCCCEEECcCCcccccCCc
Q 044133 24 TLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQING-SIPLEIE-------NLKVLHVLDLSRNEIGGSIPS 95 (384)
Q Consensus 24 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~ 95 (384)
.+...++|+++++++|.+ ..+..+... |+.|++++|.+.. ..+..+. ++++|++|++++|.+....+.
T Consensus 38 ~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 38 LYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 345667899999998888 455555443 8888999888853 2333333 688999999999998877777
Q ss_pred CC--CCCCCCCEEEcCCCcccccCCcCCcCC-----CCCCEEEccCCcCcccCCccccCCcccceeecccccccCC--CC
Q 044133 96 TI--GHLKRLRILDLSQNKLVGPIPSSVGPL-----TQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGP--IP 166 (384)
Q Consensus 96 ~~--~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~ 166 (384)
.+ ..+++|++|++++|.+++. +..+..+ ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 65 7889999999999998866 5556555 8999999999999887778889999999999999986532 12
Q ss_pred ccc--cCcCCCCeeecccccccCC---CCccccCCCCCCEEEccCCcccccCC-ccCCCCCCCCeeecCCCCCCCCCCCc
Q 044133 167 STI--ASLVNLKSLSLHYNNLIGP---IPSTLGHLNRLTDLDLSENKLVGPIP-SSVGHLNFLQDLDLSNNKLEDLSDNK 240 (384)
Q Consensus 167 ~~~--~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~ 240 (384)
..+ ..+++|++|++++|.+... ....+..+++|++|++++|.++...+ ..+..+++|+.|++++|.++.++.
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~-- 270 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK-- 270 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCS--
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhh--
Confidence 233 7889999999999988732 22344678999999999999887553 566778999999999999886543
Q ss_pred ccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCC
Q 044133 241 LDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSING 291 (384)
Q Consensus 241 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 291 (384)
.+. ++|++|++++|++++. +. +..+++|++|++++|++.+
T Consensus 271 -------~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 271 -------GLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -------SCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -------hcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 222 7899999999999866 44 8899999999999999885
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=1.8e-26 Score=214.47 Aligned_cols=147 Identities=20% Similarity=0.195 Sum_probs=64.6
Q ss_pred CCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEcc
Q 044133 54 QLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMH 133 (384)
Q Consensus 54 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (384)
+|+.|++++|.+....+..|..+++|++|++++|.+....+ +..+++|++|++++|.+++.. ..++|+.|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 45555555555544444444455555555555554442221 444455555555555444221 11445555555
Q ss_pred CCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCcccc-CCCCCCEEEccCCccc
Q 044133 134 SNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLG-HLNRLTDLDLSENKLV 210 (384)
Q Consensus 134 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 210 (384)
+|.+.+..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+. .+++|+.|++++|.++
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 5544432221 224444455544444443333444444444444444444433332222 3444444444444433
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=8e-24 Score=200.75 Aligned_cols=260 Identities=25% Similarity=0.274 Sum_probs=209.3
Q ss_pred CCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEc
Q 044133 29 SKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDL 108 (384)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 108 (384)
.+++.|++++|.++ .++..+. ++|+.|++++|.+... +. .+++|++|++++|.++ .++. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 46999999999998 4455444 7999999999998844 33 5789999999999988 3444 6799999999
Q ss_pred CCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCC
Q 044133 109 SQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGP 188 (384)
Q Consensus 109 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 188 (384)
++|.++.... .+++|+.|++++|.++.... .+++|++|++++|.+... +. ..++|+.|++++|.++..
T Consensus 109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l 176 (622)
T 3g06_A 109 FSNPLTHLPA----LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSL 176 (622)
T ss_dssp CSCCCCCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCC
T ss_pred cCCcCCCCCC----CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCC
Confidence 9999886433 56899999999999986433 348899999999988743 32 357899999999998864
Q ss_pred CCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCC
Q 044133 189 IPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGS 268 (384)
Q Consensus 189 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 268 (384)
+ ..+++|+.|++++|.++.+.. .+++|+.|++++|.+..++. .+++|+.|++++|++++.
T Consensus 177 -~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~l~~------------~~~~L~~L~Ls~N~L~~l 236 (622)
T 3g06_A 177 -P---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTSLPA------------LPSGLKELIVSGNRLTSL 236 (622)
T ss_dssp -C---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSCCC------------CCTTCCEEECCSSCCSCC
T ss_pred -c---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccccCC------------CCCCCCEEEccCCccCcC
Confidence 3 557899999999999885432 35799999999999887642 137899999999999864
Q ss_pred CCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccCcc---ccCCCeEEcccCcCCCCCCC
Q 044133 269 IPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVF---VRKVPHLDVSGNKFGGEIPT 340 (384)
Q Consensus 269 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~---~~~l~~l~l~~~~~~~~~p~ 340 (384)
. ..+++|+.|++++|.+. .+|. .+++|+.|++++|.++ .+|.. +++|+.+++++|++++..|.
T Consensus 237 p----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 237 P----VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp C----CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred C----CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 3 45689999999999998 4555 6789999999999999 55643 46889999999999875543
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=2.2e-24 Score=186.12 Aligned_cols=208 Identities=25% Similarity=0.245 Sum_probs=114.7
Q ss_pred CCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEc
Q 044133 29 SKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDL 108 (384)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 108 (384)
++|++|++++|.+++..+..|.++++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 35666666666666555556666666666666666666555555666666666666666666555555666666666666
Q ss_pred CCCcccccCCcCCcCCCCCCEEEccCCcCccc-CCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccC
Q 044133 109 SQNKLVGPIPSSVGPLTQLTTLNMHSNRINGS-IPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIG 187 (384)
Q Consensus 109 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 187 (384)
++|.+.+..+..+..+++|+.|++++|.+... .+..+..+++|++|++++|.+....+..+..+++|+
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----------- 176 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP----------- 176 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCT-----------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcc-----------
Confidence 66666555444555666666666666665542 244555555666666665555544334444444443
Q ss_pred CCCccccCCCCCC-EEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCccc
Q 044133 188 PIPSTLGHLNRLT-DLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLS 266 (384)
Q Consensus 188 ~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 266 (384)
.+. .|++++|.++...+..+.. .+|+.|++++|.+..++. ..+..+++|+.|++++|.++
T Consensus 177 ----------~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 177 ----------LLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPD--------GIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp ----------TCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCT--------TTTTTCCSCCEEECCSSCBC
T ss_pred ----------ccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCH--------hHhcccccccEEEccCCccc
Confidence 111 4455555444333333322 245555555555443322 22334555555555555554
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=7e-24 Score=182.24 Aligned_cols=185 Identities=24% Similarity=0.261 Sum_probs=121.9
Q ss_pred CCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEcc
Q 044133 126 QLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLS 205 (384)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 205 (384)
+++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 45555555555544444445555555555555555544444444555666666666666555444555666677777777
Q ss_pred CCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecC
Q 044133 206 ENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLS 285 (384)
Q Consensus 206 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 285 (384)
+|.++...+..|..+++|+.|++++|.+..++. ..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK--------GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLD 189 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCH--------hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECC
Confidence 776666666666777777777777776665432 234556778888888888877666677778888888888
Q ss_pred CCcCCCCCchhhcCCCCCcEEeCCCCccccccC
Q 044133 286 GNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP 318 (384)
Q Consensus 286 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 318 (384)
+|++.+..+..+..+++|+.|++++|++.+...
T Consensus 190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 190 NNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 888886666677788888888888888877654
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=6.4e-26 Score=210.81 Aligned_cols=237 Identities=24% Similarity=0.235 Sum_probs=182.6
Q ss_pred cCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEE
Q 044133 27 RLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRIL 106 (384)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 106 (384)
.+++|++|++++|.+.+..+.+|.++++|+.|++++|.+....+ +..+++|++|++++|.+.... ..++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEE
Confidence 34589999999999998888899999999999999999875544 889999999999999987432 23899999
Q ss_pred EcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCcccc-CcCCCCeeecccccc
Q 044133 107 DLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIA-SLVNLKSLSLHYNNL 185 (384)
Q Consensus 107 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 185 (384)
++++|.+++..+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999876544 357899999999999988788889999999999999999876677765 789999999999998
Q ss_pred cCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcc
Q 044133 186 IGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLL 265 (384)
Q Consensus 186 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 265 (384)
... .....+++|+.|++++|.++...+. +..+++|+.|++++|.+..++ ..+..+++|+.|++++|.+
T Consensus 182 ~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp---------~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 182 YDV--KGQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE---------KALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CEE--ECCCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC---------TTCCCCTTCCEEECTTCCB
T ss_pred ccc--cccccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccc---------hhhccCCCCCEEEcCCCCC
Confidence 755 2334578888888888887755443 666777777777777665432 2344456666666666666
Q ss_pred c-CCCCchhcCCccccEEecC
Q 044133 266 S-GSIPSQIGKLQKLCYLDLS 285 (384)
Q Consensus 266 ~-~~~~~~~~~~~~L~~L~l~ 285 (384)
. +..+..+..++.++.++++
T Consensus 250 ~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 250 HCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHTTCHHHHHHHHH
T ss_pred cCcchHHHHHhCCCCcEEecc
Confidence 5 3334445555555555543
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=9.3e-24 Score=181.47 Aligned_cols=202 Identities=24% Similarity=0.295 Sum_probs=126.3
Q ss_pred CCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcC
Q 044133 30 KLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLS 109 (384)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (384)
..+.++++++.++. +|..+. ++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 35556666555552 232222 356666666666655544556666666666666666654444445556666666666
Q ss_pred CCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCC
Q 044133 110 QNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPI 189 (384)
Q Consensus 110 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 189 (384)
+|.+....+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 66666555555566666666666666666555555666666666666666666554555666677777777777666655
Q ss_pred CccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCC
Q 044133 190 PSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLE 234 (384)
Q Consensus 190 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 234 (384)
+..|..+++|+.|++++|.++...+..+..+++|+.|++++|++.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 556667777777777777777666666777777777777777653
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=6.5e-24 Score=182.61 Aligned_cols=185 Identities=26% Similarity=0.246 Sum_probs=100.5
Q ss_pred ccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCC
Q 044133 145 IGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQ 224 (384)
Q Consensus 145 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 224 (384)
+..+++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 136 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLT 136 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCC
Confidence 33444444444444444321 2344445555555555555444444445555555555555555544444555555556
Q ss_pred eeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCc
Q 044133 225 DLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIH 304 (384)
Q Consensus 225 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 304 (384)
+|++++|.+..++. ..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 137 ~L~L~~n~l~~~~~--------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (272)
T 3rfs_A 137 YLNLAHNQLQSLPK--------GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 208 (272)
T ss_dssp EEECCSSCCCCCCT--------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred EEECCCCccCccCH--------HHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC
Confidence 66665555443322 2234455666666666666655555556666666666666666655555566666666
Q ss_pred EEeCCCCccccccCccccCCCeEEcccCcCCCCCCCCCC
Q 044133 305 TVDLSMNNLSGGIPVFVRKVPHLDVSGNKFGGEIPTTLA 343 (384)
Q Consensus 305 ~L~l~~n~~~~~~~~~~~~l~~l~l~~~~~~~~~p~~~~ 343 (384)
.|++++|++.+.+| +++.++++.|.++|.+|...+
T Consensus 209 ~L~l~~N~~~~~~~----~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 209 YIWLHDNPWDCTCP----GIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp EEECCSSCBCCCTT----TTHHHHHHHHHTGGGBBCTTS
T ss_pred EEEccCCCccccCc----HHHHHHHHHHhCCCcccCccc
Confidence 66666666665433 455566666666666665544
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=4.7e-23 Score=178.59 Aligned_cols=180 Identities=27% Similarity=0.185 Sum_probs=109.7
Q ss_pred CCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEcc
Q 044133 126 QLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLS 205 (384)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 205 (384)
+++.|++++|.+....+..+..+++|++|++++|.+..... ...+++|+.|++++|.+. ..+..+..+++|+.|+++
T Consensus 32 ~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECC
Confidence 34444444444443333344444444444444444432211 134455566666555554 233445566667777777
Q ss_pred CCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecC
Q 044133 206 ENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLS 285 (384)
Q Consensus 206 ~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 285 (384)
+|.++...+..|..+++|+.|++++|.+..++. ..+..+++|+.|++++|++++..+..|..+++|++|+++
T Consensus 109 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPP--------GLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180 (290)
T ss_dssp SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCT--------TTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCcCcccCHHHHcCCCCCCEEECCCCCCCccCh--------hhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECC
Confidence 776666666667777777777777776665432 234456777777777777776666666777788888888
Q ss_pred CCcCCCCCchhhcCCCCCcEEeCCCCcccccc
Q 044133 286 GNSINGKIPYQLGAIPGIHTVDLSMNNLSGGI 317 (384)
Q Consensus 286 ~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 317 (384)
+|++. .+|..+...+.|+.+++++|++.+.+
T Consensus 181 ~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp SSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 88777 56666667778888888888877644
No 75
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.91 E-value=1.9e-26 Score=220.80 Aligned_cols=326 Identities=16% Similarity=0.106 Sum_probs=176.0
Q ss_pred CCEEeccCCc-CccC-CChhhhcCCCCCeeeccCCcccccC----ChhhhCCCCCcEEeccCCccccc----CCcccCCC
Q 044133 7 LVHLDLSNNH-LTGH-IPPTLGRLSKLKILNLSSNSLVGNV----PSTLSHLTQLTTLAIASNQINGS----IPLEIENL 76 (384)
Q Consensus 7 L~~L~l~~~~-~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~ 76 (384)
|++|++++|. ++.. ......+|++|++|++++|.+.+.. ...+.++++|++|++++|.+... .+..+.++
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~ 219 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNC 219 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhC
Confidence 5666665553 1111 1111234556666666555544331 12234455555555555554311 11223345
Q ss_pred CCCCEEECcCCcccccCCcC---------------------------CCCCCCCCEEEcCCCcccccCCcCCcCCCCCCE
Q 044133 77 KVLHVLDLSRNEIGGSIPST---------------------------IGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTT 129 (384)
Q Consensus 77 ~~L~~L~l~~~~~~~~~~~~---------------------------~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 129 (384)
++|++|++++|.+.. .+.. +..+++|+.|+++++... ..+..+..+++|++
T Consensus 220 ~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 220 RSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRK 297 (592)
T ss_dssp TTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCE
T ss_pred CCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcE
Confidence 555555555554432 2233 334445555555443211 23334445566666
Q ss_pred EEccCCcCcccCC-ccccCCcccceeecccccccCCCCccccCcCCCCeeeccc-----------ccccCCCC-ccccCC
Q 044133 130 LNMHSNRINGSIP-LEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHY-----------NNLIGPIP-STLGHL 196 (384)
Q Consensus 130 L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~~-~~~~~~ 196 (384)
|++++|.+..... ..+..+++|++|+++++......+.....+++|++|++++ +.++.... .....+
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 6666666432211 2235566666666662211111222234556677777762 22322111 123346
Q ss_pred CCCCEEEccCCcccccCCccCCC-CCCCCeeecC----CCCCCCCCCCcccCCCCccccCCCCCcEEEccCCc--ccCCC
Q 044133 197 NRLTDLDLSENKLVGPIPSSVGH-LNFLQDLDLS----NNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNL--LSGSI 269 (384)
Q Consensus 197 ~~L~~L~l~~~~~~~~~~~~~~~-l~~L~~L~l~----~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~ 269 (384)
++|++|++..+.+++.....+.. +++|+.|+++ .+.+++.+.. ..++..+..+++|++|++++|. +++..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~---~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD---NGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH---HHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH---HHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 77777777666665443333433 6778888885 3444432211 0012335568899999997653 55444
Q ss_pred Cchh-cCCccccEEecCCCcCCCC-CchhhcCCCCCcEEeCCCCcccccc-C---ccccCCCeEEcccCcCCCC
Q 044133 270 PSQI-GKLQKLCYLDLSGNSINGK-IPYQLGAIPGIHTVDLSMNNLSGGI-P---VFVRKVPHLDVSGNKFGGE 337 (384)
Q Consensus 270 ~~~~-~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~-~---~~~~~l~~l~l~~~~~~~~ 337 (384)
...+ ..+++|++|++++|++++. ++..+..+++|++|++++|++++.. + ..+++|+.|++++|++++.
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 4444 3478899999999998753 3455678899999999999987542 2 2467899999999998865
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.1e-23 Score=179.36 Aligned_cols=211 Identities=22% Similarity=0.213 Sum_probs=151.1
Q ss_pred EeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcc
Q 044133 10 LDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEI 89 (384)
Q Consensus 10 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 89 (384)
+++..+.+.+. ....++++|+.|++++|.+... ..+..+++|++|++++|.+... ..+..+++|++|++++|.+
T Consensus 24 l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l 97 (272)
T 3rfs_A 24 ANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQL 97 (272)
T ss_dssp HHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCC
T ss_pred HHhcCcccccc--cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCcc
Confidence 33444444422 3356677888888877776632 3467778888888888877642 3567778888888888877
Q ss_pred cccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccc
Q 044133 90 GGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTI 169 (384)
Q Consensus 90 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 169 (384)
....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+
T Consensus 98 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 177 (272)
T 3rfs_A 98 QSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVF 177 (272)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHh
Confidence 76555667777888888888888776666667778888888888887776666667777888888888887776666667
Q ss_pred cCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCC
Q 044133 170 ASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKL 233 (384)
Q Consensus 170 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~ 233 (384)
..+++|+.|++++|.+....+..+..+++|+.|++++|.+. ..+++++.+++..|.+
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~ 234 (272)
T 3rfs_A 178 DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKH 234 (272)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHT
T ss_pred cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhC
Confidence 77788888888888877766666777888888888887654 3356677777776644
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=7.3e-23 Score=177.38 Aligned_cols=200 Identities=28% Similarity=0.285 Sum_probs=104.9
Q ss_pred CCCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCE
Q 044133 2 GRLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHV 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 81 (384)
++++++++++++++.++... ..+. +++++|++++|.++...+..|.++++|++|++++|.+....+. ..+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip-~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALP-PDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCC-SCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred cccCCccEEECCCCCCCcCC-CCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 34566666666666666332 2222 4666666666666655555666666666666666665543221 45566666
Q ss_pred EECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccc
Q 044133 82 LDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKL 161 (384)
Q Consensus 82 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 161 (384)
|++++|.+. ..+..+..+++|++|++++|++++..+..|..+++|+.|++++|.+....+..+..+++|+.|++++|.+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 160 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL 160 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcC
Confidence 666666555 3444455555666666666655554445555555555555555555544444444555555555555554
Q ss_pred cCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCc
Q 044133 162 EGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENK 208 (384)
Q Consensus 162 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 208 (384)
....+..+..+++|+.|++++|.+.. .+..+...++|+.+++.+|+
T Consensus 161 ~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 161 TELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCC
T ss_pred CccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCC
Confidence 43333334444444444444444442 22223333344444444443
No 78
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=7.3e-23 Score=172.65 Aligned_cols=196 Identities=16% Similarity=0.167 Sum_probs=150.9
Q ss_pred CCCeeeccCCcccccCChhhhCCCCCcEEeccCCc-ccccCCcccCCCCCCCEEECcC-CcccccCCcCCCCCCCCCEEE
Q 044133 30 KLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQ-INGSIPLEIENLKVLHVLDLSR-NEIGGSIPSTIGHLKRLRILD 107 (384)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~ 107 (384)
+|++|++++|.++...+.+|.++++|++|++++|. +....+..|.++++|++|++++ |.+....+..+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78888888888887767778888888888888886 7666666778888888888887 777766666777888888888
Q ss_pred cCCCcccccCCcCCcCCCCCC---EEEccCC-cCcccCCccccCCcccc-eeecccccccCCCCccccCcCCCCeeeccc
Q 044133 108 LSQNKLVGPIPSSVGPLTQLT---TLNMHSN-RINGSIPLEIGNLNFLQ-VLGLSDNKLEGPIPSTIASLVNLKSLSLHY 182 (384)
Q Consensus 108 l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 182 (384)
+++|.+++. +. +..+++|+ .|++++| .+....+..+..+++|+ +|++++|.+.......+.. ++|+.|++++
T Consensus 112 l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKMF-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCSC-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCccc-cc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 888887753 33 77777777 8888888 77776666788888888 8888888877444444544 7888888888
Q ss_pred cc-ccCCCCccccCC-CCCCEEEccCCcccccCCccCCCCCCCCeeecCCC
Q 044133 183 NN-LIGPIPSTLGHL-NRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNN 231 (384)
Q Consensus 183 ~~-~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 231 (384)
|. +....+..|..+ ++|+.|++++|.++..... .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 84 776666777888 8888999988888755443 5678888888775
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=8.2e-25 Score=196.21 Aligned_cols=260 Identities=21% Similarity=0.226 Sum_probs=139.7
Q ss_pred EEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCC----hhhhCCC-CCcEEeccCCcccccCCcccCCC-----CC
Q 044133 9 HLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVP----STLSHLT-QLTTLAIASNQINGSIPLEIENL-----KV 78 (384)
Q Consensus 9 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~-----~~ 78 (384)
++++++|.+++..+..+...++|++|++++|.++...+ .+|..++ +|++|++++|.+....+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45677787776666655666668888888888876655 6677777 78888888888776555444432 77
Q ss_pred CCEEECcCCcccccCCcC----CCCC-CCCCEEEcCCCcccccCCcC----CcC-CCCCCEEEccCCcCcccCCccccCC
Q 044133 79 LHVLDLSRNEIGGSIPST----IGHL-KRLRILDLSQNKLVGPIPSS----VGP-LTQLTTLNMHSNRINGSIPLEIGNL 148 (384)
Q Consensus 79 L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~----l~~-l~~L~~L~l~~~~~~~~~~~~~~~~ 148 (384)
|++|++++|.++...+.. +..+ ++|++|++++|.++...... +.. .++|+.|++++|.+.+.....+
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l--- 158 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL--- 158 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH---
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH---
Confidence 777777777776443332 2333 56666666666665433322 222 2355555555555543221111
Q ss_pred cccceeecccccccCCCCccccCcC-CCCeeecccccccCCCCc----cccCC-CCCCEEEccCCccccc----CCccCC
Q 044133 149 NFLQVLGLSDNKLEGPIPSTIASLV-NLKSLSLHYNNLIGPIPS----TLGHL-NRLTDLDLSENKLVGP----IPSSVG 218 (384)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~----~~~~~~ 218 (384)
...+...+ +|++|++++|.+....+. .+..+ ++|++|++++|.+.+. .+..+.
T Consensus 159 -----------------~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 159 -----------------IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221 (362)
T ss_dssp -----------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred -----------------HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh
Confidence 11112222 444444444444433221 12223 3555555555554431 111222
Q ss_pred C-CCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCC-------CchhcCCccccEEecCCCcCC
Q 044133 219 H-LNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSI-------PSQIGKLQKLCYLDLSGNSIN 290 (384)
Q Consensus 219 ~-l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-------~~~~~~~~~L~~L~l~~n~~~ 290 (384)
. .++|++|++++|.+.+.+...+. ..+..+++|++|++++|.+.+.. ...+..+++|+.|++++|++.
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~----~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~ 297 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLK----LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH 297 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHH----HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred cCCCCceEEECcCCCCCcHHHHHHH----HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence 2 23566666666655544321111 22344566777777776643222 223455566666667666666
Q ss_pred CC
Q 044133 291 GK 292 (384)
Q Consensus 291 ~~ 292 (384)
+.
T Consensus 298 ~~ 299 (362)
T 3goz_A 298 PS 299 (362)
T ss_dssp GG
T ss_pred Cc
Confidence 44
No 80
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=1.2e-25 Score=215.20 Aligned_cols=136 Identities=12% Similarity=0.088 Sum_probs=78.0
Q ss_pred CCCCCEEEccCCcccccCCccCC-CCCCCCeeecC--C----CCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCC
Q 044133 196 LNRLTDLDLSENKLVGPIPSSVG-HLNFLQDLDLS--N----NKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGS 268 (384)
Q Consensus 196 ~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~--~----n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 268 (384)
+++|+.|.+..+.+++.....+. .+++|+.|+++ + +.+++.+. ...++..+..+++|+.|++++ .+++.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~---~~~~~~l~~~~~~L~~L~L~~-~l~~~ 446 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL---DIGFGAIVEHCKDLRRLSLSG-LLTDK 446 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT---HHHHHHHHHHCTTCCEEECCS-SCCHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch---hhHHHHHHhhCCCccEEeecC-cccHH
Confidence 44555554444444322222222 35667777776 2 22322111 000112245567788888866 55544
Q ss_pred CCchhcC-CccccEEecCCCcCCCCCchhh-cCCCCCcEEeCCCCccccccC----ccccCCCeEEcccCcCC
Q 044133 269 IPSQIGK-LQKLCYLDLSGNSINGKIPYQL-GAIPGIHTVDLSMNNLSGGIP----VFVRKVPHLDVSGNKFG 335 (384)
Q Consensus 269 ~~~~~~~-~~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~----~~~~~l~~l~l~~~~~~ 335 (384)
....+.. +++|+.|++++|.+++.....+ ..+++|+.|++++|++++... ..+++|+.|++++|+++
T Consensus 447 ~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 4444443 6788888888888765544444 567888888888888754322 34567888888888774
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=1.2e-24 Score=195.19 Aligned_cols=261 Identities=20% Similarity=0.171 Sum_probs=159.8
Q ss_pred eeccCCcccccCChhhhCCCCCcEEeccCCcccccCC----cccCCCC-CCCEEECcCCcccccCCcCCCCCCCCCEEEc
Q 044133 34 LNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIP----LEIENLK-VLHVLDLSRNEIGGSIPSTIGHLKRLRILDL 108 (384)
Q Consensus 34 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 108 (384)
..++.|.+.+..+..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+....+..+..+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-------- 74 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI-------- 74 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHH--------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHH--------
Confidence 3455566655544444444456666666666654443 3444555 56666666665554333333221
Q ss_pred CCCcccccCCcCCcC-CCCCCEEEccCCcCcccCCcc----ccCC-cccceeecccccccCCCCccc----cC-cCCCCe
Q 044133 109 SQNKLVGPIPSSVGP-LTQLTTLNMHSNRINGSIPLE----IGNL-NFLQVLGLSDNKLEGPIPSTI----AS-LVNLKS 177 (384)
Q Consensus 109 ~~~~~~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~----~~~~-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~ 177 (384)
+.. .++|++|++++|.+.+..+.. +... ++|++|++++|.+.+.....+ .. .++|++
T Consensus 75 ------------l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 75 ------------LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp ------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred ------------HhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 111 144555555555544333222 2222 556666666666554433332 22 257788
Q ss_pred eecccccccCCCCc----cccCCC-CCCEEEccCCcccccCCc----cCCCC-CCCCeeecCCCCCCCCCCCcccCCCCc
Q 044133 178 LSLHYNNLIGPIPS----TLGHLN-RLTDLDLSENKLVGPIPS----SVGHL-NFLQDLDLSNNKLEDLSDNKLDGPIPP 247 (384)
Q Consensus 178 L~l~~~~~~~~~~~----~~~~~~-~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~~~~ 247 (384)
|++++|.+...... .+...+ +|++|++++|.++...+. .+..+ ++|+.|++++|.+.+.+...+. .
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~----~ 218 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELA----Y 218 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH----H
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHH----H
Confidence 88887777644332 334454 999999999998766543 33445 5999999999998774332222 3
Q ss_pred cccC-CCCCcEEEccCCcccCCCCc----hhcCCccccEEecCCCcCCCCCc-------hhhcCCCCCcEEeCCCCcccc
Q 044133 248 ELMN-CSKLTTLILGNNLLSGSIPS----QIGKLQKLCYLDLSGNSINGKIP-------YQLGAIPGIHTVDLSMNNLSG 315 (384)
Q Consensus 248 ~~~~-~~~L~~L~l~~~~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~-------~~l~~~~~L~~L~l~~n~~~~ 315 (384)
.+.. .++|++|++++|.+++.... .+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|++.+
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 4444 46999999999999876543 34677899999999998654433 356778889999999999887
Q ss_pred ccC
Q 044133 316 GIP 318 (384)
Q Consensus 316 ~~~ 318 (384)
..+
T Consensus 299 ~~~ 301 (362)
T 3goz_A 299 SHS 301 (362)
T ss_dssp GGC
T ss_pred cch
Confidence 633
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=3.8e-24 Score=190.15 Aligned_cols=256 Identities=19% Similarity=0.206 Sum_probs=179.7
Q ss_pred CCCCeeeccCCcccccCChhhhCC--CCCcEEeccCCcccccCCcccCCCCCCCEEECcCCccccc-CCcCCCCCCCCCE
Q 044133 29 SKLKILNLSSNSLVGNVPSTLSHL--TQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGS-IPSTIGHLKRLRI 105 (384)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~ 105 (384)
..++.++++++.+. +..+..+ +.++.+++++|.+....+. +..+++|++|++++|.+... .+..+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 34777888777655 3445555 7788888888877655444 44678888888888877643 4556677888888
Q ss_pred EEcCCCcccccCCcCCcCCCCCCEEEccCC-cCccc-CCccccCCcccceeecccc-cccCC-CCccccCcC-CCCeeec
Q 044133 106 LDLSQNKLVGPIPSSVGPLTQLTTLNMHSN-RINGS-IPLEIGNLNFLQVLGLSDN-KLEGP-IPSTIASLV-NLKSLSL 180 (384)
Q Consensus 106 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l 180 (384)
|++++|.+++..+..+..+++|+.|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 888888877655666777888888888888 45532 3444667888888888888 76643 345567778 8888888
Q ss_pred cccc--cc-CCCCccccCCCCCCEEEccCCc-ccccCCccCCCCCCCCeeecCCCC-CCCCCCCcccCCCCccccCCCCC
Q 044133 181 HYNN--LI-GPIPSTLGHLNRLTDLDLSENK-LVGPIPSSVGHLNFLQDLDLSNNK-LEDLSDNKLDGPIPPELMNCSKL 255 (384)
Q Consensus 181 ~~~~--~~-~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~~~~~~~~~~L 255 (384)
++|. ++ ...+..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +.+. . ...+..+++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~-----~~~l~~~~~L 274 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE---T-----LLELGEIPTL 274 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG---G-----GGGGGGCTTC
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH---H-----HHHHhcCCCC
Confidence 8884 33 2234455678899999999988 665666677888999999999885 2211 1 1245668999
Q ss_pred cEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcC
Q 044133 256 TTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGA 299 (384)
Q Consensus 256 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 299 (384)
+.|++++| +++.....+. ..+..|++++|++++..|..+..
T Consensus 275 ~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 275 KTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred CEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 99999998 5543333332 34677778999999887776654
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=3.5e-22 Score=168.48 Aligned_cols=196 Identities=16% Similarity=0.167 Sum_probs=101.6
Q ss_pred CCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCc-CcccCCccccCCcccceeeccc-ccccCCCCccccCcCCCCeee
Q 044133 102 RLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNR-INGSIPLEIGNLNFLQVLGLSD-NKLEGPIPSTIASLVNLKSLS 179 (384)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~ 179 (384)
++++|++++|++++..+..+..+++|+.|++++|. ++...+..|..+++|++|++++ |.+....+..|..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444444444444444444555555555543 4434444444555555555554 444443344455555555555
Q ss_pred cccccccCCCCccccCCCCCC---EEEccCC-cccccCCccCCCCCCCC-eeecCCCCCCCCCCCcccCCCCccccCCCC
Q 044133 180 LHYNNLIGPIPSTLGHLNRLT---DLDLSEN-KLVGPIPSSVGHLNFLQ-DLDLSNNKLEDLSDNKLDGPIPPELMNCSK 254 (384)
Q Consensus 180 l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 254 (384)
+++|.+.. .+. +..+++|+ .|++++| .++.+.+..|..+++|+ .|++++|.+..++... +.. ++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~--------~~~-~~ 180 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA--------FNG-TK 180 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT--------TTT-CE
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh--------cCC-CC
Confidence 55555543 222 44555555 6666666 55555555566666666 6666666555443321 111 45
Q ss_pred CcEEEccCCc-ccCCCCchhcCC-ccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCC
Q 044133 255 LTTLILGNNL-LSGSIPSQIGKL-QKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMN 311 (384)
Q Consensus 255 L~~L~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 311 (384)
|+.|++++|. +++..+..|..+ ++|+.|++++|++.+..+. .+++|+.|+++++
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 6666666663 554555555555 6666666666666532222 3455666665554
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=3.4e-24 Score=190.45 Aligned_cols=256 Identities=20% Similarity=0.282 Sum_probs=139.0
Q ss_pred CCcEEeccCCcccccCCcccCCC--CCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCccccc-CCcCCcCCCCCCEE
Q 044133 54 QLTTLAIASNQINGSIPLEIENL--KVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGP-IPSSVGPLTQLTTL 130 (384)
Q Consensus 54 ~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L 130 (384)
.++.++++++.+. +..+..+ +.++.++++++.+....+. +..+++|++|++++|.+... .+..+..+++|+.|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777766554 2333334 5666666666666533332 34456666666666655432 33344555566666
Q ss_pred EccCCcCcccCCccccCCcccceeecccc-cccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCC-c
Q 044133 131 NMHSNRINGSIPLEIGNLNFLQVLGLSDN-KLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSEN-K 208 (384)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~ 208 (384)
++++|.+.+..+..+..+++|++|++++| .+++. ..+..+..+++|++|++++| .
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-----------------------~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----------------------ALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----------------------HHHHHHHHCTTCCEEECCCCTT
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-----------------------HHHHHHhcCCCCCEEcCCCCCC
Confidence 66555554433344444555555555554 23221 01222334455555555555 4
Q ss_pred cccc-CCccCCCCC-CCCeeecCCCC--CCCCCCCcccCCCCccccCCCCCcEEEccCCc-ccCCCCchhcCCccccEEe
Q 044133 209 LVGP-IPSSVGHLN-FLQDLDLSNNK--LEDLSDNKLDGPIPPELMNCSKLTTLILGNNL-LSGSIPSQIGKLQKLCYLD 283 (384)
Q Consensus 209 ~~~~-~~~~~~~l~-~L~~L~l~~n~--~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~ 283 (384)
+++. .+..+..++ +|++|++++|. +.+ +.++..+..+++|++|++++|. +++..+..+..+++|++|+
T Consensus 181 l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~-------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~ 253 (336)
T 2ast_B 181 FTEKHVQVAVAHVSETITQLNLSGYRKNLQK-------SDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253 (336)
T ss_dssp CCHHHHHHHHHHSCTTCCEEECCSCGGGSCH-------HHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred cChHHHHHHHHhcccCCCEEEeCCCcccCCH-------HHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence 4322 223344455 56666665552 221 0112334456777777777776 5555556667777777777
Q ss_pred cCCCc-CCCCCchhhcCCCCCcEEeCCCCccccccCccc-cCCCeEEcccCcCCCCCCCCCCC
Q 044133 284 LSGNS-INGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFV-RKVPHLDVSGNKFGGEIPTTLAN 344 (384)
Q Consensus 284 l~~n~-~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~-~~l~~l~l~~~~~~~~~p~~~~~ 344 (384)
+++|. +.......+..+++|+.|++++| ++......+ ..++.+++++|.+++..|...+.
T Consensus 254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHHhhCcceEEecccCccccCCcccc
Confidence 77774 33222335667777888888877 443322223 34677778888888777766554
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.1e-22 Score=176.61 Aligned_cols=227 Identities=21% Similarity=0.213 Sum_probs=174.3
Q ss_pred CCCCCeeeccCCcccccCCh---hhhCCCCCcEEeccCCcccccCCccc--CCCCCCCEEECcCCcccccCC----cCCC
Q 044133 28 LSKLKILNLSSNSLVGNVPS---TLSHLTQLTTLAIASNQINGSIPLEI--ENLKVLHVLDLSRNEIGGSIP----STIG 98 (384)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~ 98 (384)
...++.+.+.++.+...... .+..+++|++|++++|.+....+..+ ..+++|++|++++|.+....+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34577888877766532111 12345679999999999987777777 889999999999999875433 3345
Q ss_pred CCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCccc---C-CccccCCcccceeecccccccCCCC--c-cccC
Q 044133 99 HLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGS---I-PLEIGNLNFLQVLGLSDNKLEGPIP--S-TIAS 171 (384)
Q Consensus 99 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~-~~~~~~~~~L~~L~l~~~~~~~~~~--~-~~~~ 171 (384)
.+++|++|++++|.+....+..+..+++|+.|++++|.+.+. . ...+..+++|++|++++|.++.... . .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~ 222 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA 222 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence 789999999999999888888899999999999999987531 1 2234678899999999998863211 1 2467
Q ss_pred cCCCCeeecccccccCCCCccccCC---CCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCcc
Q 044133 172 LVNLKSLSLHYNNLIGPIPSTLGHL---NRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPE 248 (384)
Q Consensus 172 ~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 248 (384)
+++|++|++++|.+....+..+..+ ++|++|++++|.++.+ +..+. ++|+.|++++|.+..++.
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N~l~~~~~---------- 289 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSNRLNRAPQ---------- 289 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSCCCCSCCC----------
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCCcCCCCch----------
Confidence 7999999999999987766556555 7999999999999854 44443 799999999999886532
Q ss_pred ccCCCCCcEEEccCCcccC
Q 044133 249 LMNCSKLTTLILGNNLLSG 267 (384)
Q Consensus 249 ~~~~~~L~~L~l~~~~~~~ 267 (384)
+..+++|+.|++++|.+++
T Consensus 290 ~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTSCCCCSCEECSSTTTSC
T ss_pred hhhCCCccEEECcCCCCCC
Confidence 3457899999999999874
No 86
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=1.7e-24 Score=207.30 Aligned_cols=305 Identities=14% Similarity=0.115 Sum_probs=204.8
Q ss_pred CCCCCCEEeccCCcCccCCC----hhhhcCCCCCeeeccCCcccc----cCChhhhCCCCCcEEeccCCcccccCCc---
Q 044133 3 RLRNLVHLDLSNNHLTGHIP----PTLGRLSKLKILNLSSNSLVG----NVPSTLSHLTQLTTLAIASNQINGSIPL--- 71 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~--- 71 (384)
++++|++|++++|.+++... .....+++|++|++++|.+.+ ..+..+.++++|+.|++++|.+.. .+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 57888888888887765532 234567888888888777652 223344567888888888776543 122
Q ss_pred ------------------------ccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCC-cCCcCCCC
Q 044133 72 ------------------------EIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIP-SSVGPLTQ 126 (384)
Q Consensus 72 ------------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~ 126 (384)
.+..+++|+.++++++... ..+..+..+++|++|++++|.++.... ..+..+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 2344455555555543222 344556678999999999998654322 33578999
Q ss_pred CCEEEccCCcCcccCCccccCCcccceeeccc-----------ccccCCCC-ccccCcCCCCeeecccccccCCCCcccc
Q 044133 127 LTTLNMHSNRINGSIPLEIGNLNFLQVLGLSD-----------NKLEGPIP-STIASLVNLKSLSLHYNNLIGPIPSTLG 194 (384)
Q Consensus 127 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 194 (384)
|+.|++.++......+.....+++|++|++++ +.++.... .....+++|++|++..+.++......+.
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 99999984322222233345788999999993 34443222 2234589999999987777654444454
Q ss_pred C-CCCCCEEEcc----CCccccc-----CCccCCCCCCCCeeecCCCC--CCCCCCCcccCCCCccccCCCCCcEEEccC
Q 044133 195 H-LNRLTDLDLS----ENKLVGP-----IPSSVGHLNFLQDLDLSNNK--LEDLSDNKLDGPIPPELMNCSKLTTLILGN 262 (384)
Q Consensus 195 ~-~~~L~~L~l~----~~~~~~~-----~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 262 (384)
. +++|+.|+++ .+.+++. ....+..+++|+.|++++|. +.+.. +. .....+++|++|++++
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~---~~----~~~~~~~~L~~L~L~~ 472 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG---LS----YIGQYSPNVRWMLLGY 472 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH---HH----HHHHSCTTCCEEEECS
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH---HH----HHHHhCccceEeeccC
Confidence 4 8999999996 4445432 11225568999999997643 32211 11 1223478999999999
Q ss_pred CcccCCC-CchhcCCccccEEecCCCcCCCC-CchhhcCCCCCcEEeCCCCccccc
Q 044133 263 NLLSGSI-PSQIGKLQKLCYLDLSGNSINGK-IPYQLGAIPGIHTVDLSMNNLSGG 316 (384)
Q Consensus 263 ~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~ 316 (384)
|.+++.. +..+..+++|++|++++|.+++. ++.....+++|+.|++++|++++.
T Consensus 473 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 473 VGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 9988643 34457889999999999998654 344456789999999999998875
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.2e-24 Score=196.95 Aligned_cols=250 Identities=21% Similarity=0.236 Sum_probs=130.9
Q ss_pred cCChhhhCCCCCcEEeccCCcccccC----CcccCCCCCCCEEECcCCccc---ccCCcC-------CCCCCCCCEEEcC
Q 044133 44 NVPSTLSHLTQLTTLAIASNQINGSI----PLEIENLKVLHVLDLSRNEIG---GSIPST-------IGHLKRLRILDLS 109 (384)
Q Consensus 44 ~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~---~~~~~~-------~~~l~~L~~L~l~ 109 (384)
....++..+++|++|++++|.+.... ...+..+++|++|++++|.+. ...|.. +..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 35566777888888888888776442 233667788888888776433 222222 2456677777777
Q ss_pred CCcccc----cCCcCCcCCCCCCEEEccCCcCcccCCcccc----CC---------cccceeecccccccCCCCccccCc
Q 044133 110 QNKLVG----PIPSSVGPLTQLTTLNMHSNRINGSIPLEIG----NL---------NFLQVLGLSDNKLEGPIPSTIASL 172 (384)
Q Consensus 110 ~~~~~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~----~~---------~~L~~L~l~~~~~~~~~~~~~~~~ 172 (384)
+|.+.. ..+..+..+++|+.|++++|.+....+..+. .+ ++|++|++++|.+.......
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~---- 178 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE---- 178 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH----
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH----
Confidence 776654 2333455566666666666665432222221 12 44555555544443111110
Q ss_pred CCCCeeecccccccCCCCccccCCCCCCEEEccCCcccc-----cCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCc
Q 044133 173 VNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVG-----PIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPP 247 (384)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~ 247 (384)
....+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+++.+. ..++.
T Consensus 179 ----------------l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~----~~l~~ 238 (386)
T 2ca6_A 179 ----------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS----SALAI 238 (386)
T ss_dssp ----------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH----HHHHH
T ss_pred ----------------HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH----HHHHH
Confidence 00123344455555555554431 111244455555556665555432111 01123
Q ss_pred cccCCCCCcEEEccCCcccCC----CCchhc--CCccccEEecCCCcCCC----CCchhh-cCCCCCcEEeCCCCccccc
Q 044133 248 ELMNCSKLTTLILGNNLLSGS----IPSQIG--KLQKLCYLDLSGNSING----KIPYQL-GAIPGIHTVDLSMNNLSGG 316 (384)
Q Consensus 248 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~--~~~~L~~L~l~~n~~~~----~~~~~l-~~~~~L~~L~l~~n~~~~~ 316 (384)
.+..+++|++|++++|.+++. .+..+. .+++|++|++++|.+.+ .++..+ ..+++|+.|++++|++++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 344556666666666666543 223332 25666666666666664 245555 4456677777777766654
Q ss_pred c
Q 044133 317 I 317 (384)
Q Consensus 317 ~ 317 (384)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 4
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=3.1e-21 Score=163.88 Aligned_cols=176 Identities=25% Similarity=0.298 Sum_probs=85.8
Q ss_pred CCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcC
Q 044133 7 LVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSR 86 (384)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 86 (384)
.++++++++.++.. |..+. +++++|++++|.+.+..+.+|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~~~-p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDSV-PSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSSC-CSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcccc-CCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 45555555555522 22222 3555555555555555445555555555555555555544444455555555555555
Q ss_pred CcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCC
Q 044133 87 NEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIP 166 (384)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 166 (384)
|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 55554434444455555555555555544444444445555555555554444333344444444444444444443333
Q ss_pred ccccCcCCCCeeecccccc
Q 044133 167 STIASLVNLKSLSLHYNNL 185 (384)
Q Consensus 167 ~~~~~~~~L~~L~l~~~~~ 185 (384)
..+..+++|+.|++++|.+
T Consensus 173 ~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 173 GAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTTTCTTCCEEECCSCCB
T ss_pred HHHhCCCCCCEEEeeCCce
Confidence 3344444444444444433
No 89
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=3.9e-21 Score=163.22 Aligned_cols=159 Identities=26% Similarity=0.276 Sum_probs=96.3
Q ss_pred ccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecC
Q 044133 150 FLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLS 229 (384)
Q Consensus 150 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 229 (384)
.++.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..|..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 34444444444444444444455555555555555554444445555566666666666555555555666666666666
Q ss_pred CCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCC
Q 044133 230 NNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLS 309 (384)
Q Consensus 230 ~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 309 (384)
+|.+..++. ..+..+++|++|++++|++++..+..|..+++|++|++++|++.+..+..+..+++|+.|+++
T Consensus 116 ~N~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 116 GNQLKSLPS--------GVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp SSCCCCCCT--------TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCcCCCcCh--------hHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 665554432 233446677777777777766655567777777777777777776666667777777777777
Q ss_pred CCccccc
Q 044133 310 MNNLSGG 316 (384)
Q Consensus 310 ~n~~~~~ 316 (384)
+|++++.
T Consensus 188 ~N~~~c~ 194 (251)
T 3m19_A 188 GNQFDCS 194 (251)
T ss_dssp SCCBCTT
T ss_pred CCceeCC
Confidence 7777765
No 90
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.8e-24 Score=194.60 Aligned_cols=246 Identities=20% Similarity=0.242 Sum_probs=156.0
Q ss_pred CCChhhhcCCCCCeeeccCCcccccCC----hhhhCCCCCcEEeccCCccc---ccCCcc-------cCCCCCCCEEECc
Q 044133 20 HIPPTLGRLSKLKILNLSSNSLVGNVP----STLSHLTQLTTLAIASNQIN---GSIPLE-------IENLKVLHVLDLS 85 (384)
Q Consensus 20 ~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~---~~~~~~-------~~~~~~L~~L~l~ 85 (384)
.....+..+++|++|++++|.+....+ ..+..+++|++|++++|.+. ...|.. +..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 345677889999999999999886533 34678999999999997543 222333 3688999999999
Q ss_pred CCcccc----cCCcCCCCCCCCCEEEcCCCcccccCCcC----CcCC---------CCCCEEEccCCcCccc-CC---cc
Q 044133 86 RNEIGG----SIPSTIGHLKRLRILDLSQNKLVGPIPSS----VGPL---------TQLTTLNMHSNRINGS-IP---LE 144 (384)
Q Consensus 86 ~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~----l~~l---------~~L~~L~l~~~~~~~~-~~---~~ 144 (384)
+|.+.. ..+..+..+++|++|++++|.+....+.. +..+ ++|+.|++++|.+... .+ ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999885 34556788999999999999986433322 3333 8999999999998732 22 24
Q ss_pred ccCCcccceeecccccccCC-----CCccccCcCCCCeeeccccccc----CCCCccccCCCCCCEEEccCCcccccCCc
Q 044133 145 IGNLNFLQVLGLSDNKLEGP-----IPSTIASLVNLKSLSLHYNNLI----GPIPSTLGHLNRLTDLDLSENKLVGPIPS 215 (384)
Q Consensus 145 ~~~~~~L~~L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 215 (384)
+..+++|++|++++|.+... .+..+..+++|+.|++++|.++ ...+..+..+++|+.|++++|.+
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i------ 256 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL------ 256 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC------
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCC------
Confidence 55677888888888776521 1124455556666666655553 12223344444455555544444
Q ss_pred cCCCCCCCCeeecCCCCCCCCCCCcccCCCCccc--cCCCCCcEEEccCCcccC----CCCchh-cCCccccEEecCCCc
Q 044133 216 SVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPEL--MNCSKLTTLILGNNLLSG----SIPSQI-GKLQKLCYLDLSGNS 288 (384)
Q Consensus 216 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~n~ 288 (384)
.+.+...+ +..+ ..+++|+.|++++|.+++ ..+..+ .++++|++|++++|+
T Consensus 257 ------------------~~~~~~~l----~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 257 ------------------SARGAAAV----VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp ------------------CHHHHHHH----HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred ------------------chhhHHHH----HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 32211001 1122 124566666666666654 233333 445666666666666
Q ss_pred CCCCC
Q 044133 289 INGKI 293 (384)
Q Consensus 289 ~~~~~ 293 (384)
+.+..
T Consensus 315 l~~~~ 319 (386)
T 2ca6_A 315 FSEED 319 (386)
T ss_dssp SCTTS
T ss_pred CCcch
Confidence 66554
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2e-21 Score=169.93 Aligned_cols=197 Identities=23% Similarity=0.350 Sum_probs=148.5
Q ss_pred hhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCC
Q 044133 25 LGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLR 104 (384)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 104 (384)
..++++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 45677888888888877643 2 57778888888888888765433 77888888888888887643 3577788888
Q ss_pred EEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeeccccc
Q 044133 105 ILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNN 184 (384)
Q Consensus 105 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 184 (384)
+|++++|.++... .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 8888888877542 37778888888888888875433 7778888888888888775322 7788888888888888
Q ss_pred ccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCC
Q 044133 185 LIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLS 237 (384)
Q Consensus 185 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 237 (384)
+.... .+..+++|++|++++|.++... .+..+++|+.|++++|.+...+
T Consensus 185 l~~~~--~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 185 ISDIS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCCCG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCC
T ss_pred cCcCh--hhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCC
Confidence 77543 3677888888888888887554 3778888888888888876543
No 92
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=1.5e-21 Score=170.87 Aligned_cols=214 Identities=28% Similarity=0.371 Sum_probs=171.2
Q ss_pred CCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcC
Q 044133 30 KLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLS 109 (384)
Q Consensus 30 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (384)
.+..+.+..+.+.... .+..+++|++|++++|.+... + .+..+++|++|++++|.+.... . +..+++|++|+++
T Consensus 20 ~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~-~-~~~l~~L~~L~L~ 93 (308)
T 1h6u_A 20 NAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLA-P-LKNLTKITELELS 93 (308)
T ss_dssp HHHHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG-G-GTTCCSCCEEECC
T ss_pred HHHHHHhCCCCcCcee--cHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCCh-h-HccCCCCCEEEcc
Confidence 3444455555554322 355688999999999988754 3 5788999999999999988443 3 8889999999999
Q ss_pred CCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCC
Q 044133 110 QNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPI 189 (384)
Q Consensus 110 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 189 (384)
+|.+.+. ..+..+++|+.|++++|.+.+.. .+..+++|++|++++|.+.... .+..+++|+.|++++|.+....
T Consensus 94 ~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 94 GNPLKNV--SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp SCCCSCC--GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG
T ss_pred CCcCCCc--hhhcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCCCh
Confidence 9998754 36888999999999999998643 4888999999999999987543 3888899999999999887543
Q ss_pred CccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCC
Q 044133 190 PSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSI 269 (384)
Q Consensus 190 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 269 (384)
+ +..+++|+.|++++|.++...+ +..+++|+.|++++|.+.++. .+..+++|+.|++++|.+++..
T Consensus 168 ~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~----------~l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 168 P--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS----------PLANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp G--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG----------GGTTCTTCCEEEEEEEEEECCC
T ss_pred h--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc----------cccCCCCCCEEEccCCeeecCC
Confidence 2 8889999999999999876543 788999999999999887653 3567899999999999997543
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=8.1e-22 Score=172.90 Aligned_cols=226 Identities=20% Similarity=0.215 Sum_probs=179.7
Q ss_pred CCCCEEeccCCcCccCCCh---hhhcCCCCCeeeccCCcccccCChhh--hCCCCCcEEeccCCcccccCC----cccCC
Q 044133 5 RNLVHLDLSNNHLTGHIPP---TLGRLSKLKILNLSSNSLVGNVPSTL--SHLTQLTTLAIASNQINGSIP----LEIEN 75 (384)
Q Consensus 5 ~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~ 75 (384)
..++.+.+.++.++..... .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+....+ ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3578888888876532111 13346789999999999998888777 889999999999999875433 33457
Q ss_pred CCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCccccc----CCcCCcCCCCCCEEEccCCcCcccCCc---cccCC
Q 044133 76 LKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGP----IPSSVGPLTQLTTLNMHSNRINGSIPL---EIGNL 148 (384)
Q Consensus 76 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~ 148 (384)
+++|++|++++|.+....+..+..+++|++|++++|++.+. ....+..+++|+.|++++|.++..... .+..+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l 223 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAG 223 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcC
Confidence 89999999999999877778899999999999999987542 123446789999999999998643221 24678
Q ss_pred cccceeecccccccCCCCccccCc---CCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCe
Q 044133 149 NFLQVLGLSDNKLEGPIPSTIASL---VNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQD 225 (384)
Q Consensus 149 ~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 225 (384)
++|++|++++|.+.+..+..+..+ ++|++|++++|.++. .+..+. ++|++|++++|.++... .+..+++|+.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~--~~L~~L~Ls~N~l~~~~--~~~~l~~L~~ 298 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP--AKLRVLDLSSNRLNRAP--QPDELPEVDN 298 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--SCCSCEECCSCCCCSCC--CTTSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--CCCCEEECCCCcCCCCc--hhhhCCCccE
Confidence 999999999999987766666666 699999999999984 454443 89999999999998652 3678899999
Q ss_pred eecCCCCCCC
Q 044133 226 LDLSNNKLED 235 (384)
Q Consensus 226 L~l~~n~~~~ 235 (384)
|++++|++++
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999998875
No 94
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.86 E-value=9.3e-24 Score=202.20 Aligned_cols=325 Identities=14% Similarity=0.148 Sum_probs=170.6
Q ss_pred CCCCCCEEeccCCcC-ccC--C------------ChhhhcCCCCCeeeccCCcccccCChhhh-CCCCCcEEeccCC-cc
Q 044133 3 RLRNLVHLDLSNNHL-TGH--I------------PPTLGRLSKLKILNLSSNSLVGNVPSTLS-HLTQLTTLAIASN-QI 65 (384)
Q Consensus 3 ~~~~L~~L~l~~~~~-~~~--~------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~-~~ 65 (384)
++++|++|+++++.. .+. . ......+++|++|++++|.+++.....+. .+++|++|++++| .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 467778888777632 111 0 11134567788888877776654444453 5777777777777 33
Q ss_pred ccc-CCcccCCCCCCCEEECcCCcccccCCcC----CCCCCCCCEEEcCCCc--ccc-cCCcCCcCCCCCCEEEccCCcC
Q 044133 66 NGS-IPLEIENLKVLHVLDLSRNEIGGSIPST----IGHLKRLRILDLSQNK--LVG-PIPSSVGPLTQLTTLNMHSNRI 137 (384)
Q Consensus 66 ~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~--~~~-~~~~~l~~l~~L~~L~l~~~~~ 137 (384)
... .+..+..+++|++|++++|.+.+..+.. ...+++|++|++++|. +.. ........+++|+.|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 321 2222346777777777777755333222 2355677777777765 111 0111123356777777766622
Q ss_pred cccCCccccCCcccceeeccccc--------------------------cc----CCCCccccCcCCCCeeecccccccC
Q 044133 138 NGSIPLEIGNLNFLQVLGLSDNK--------------------------LE----GPIPSTIASLVNLKSLSLHYNNLIG 187 (384)
Q Consensus 138 ~~~~~~~~~~~~~L~~L~l~~~~--------------------------~~----~~~~~~~~~~~~L~~L~l~~~~~~~ 187 (384)
....+..+..+++|++|+++.+. +. ...+..+..+++|+.|++++|.+..
T Consensus 224 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~ 303 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303 (594)
T ss_dssp HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCH
T ss_pred HHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCH
Confidence 11122233344444444432221 00 0111112234566666666555332
Q ss_pred CC-CccccCCCCCCEEEccCCccccc-CCccCCCCCCCCeeec----------------------------------CCC
Q 044133 188 PI-PSTLGHLNRLTDLDLSENKLVGP-IPSSVGHLNFLQDLDL----------------------------------SNN 231 (384)
Q Consensus 188 ~~-~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l----------------------------------~~n 231 (384)
.. ...+..+++|++|++.+| +.+. .......+++|++|++ ..+
T Consensus 304 ~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~ 382 (594)
T 2p1m_B 304 YDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCR 382 (594)
T ss_dssp HHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcC
Confidence 11 112334555666665555 2211 1111122444555544 333
Q ss_pred CCCCCCCCcccCCCCccc-cCCCCCcEEEcc--C----CcccCCCC-----chhcCCccccEEecCCCcCCCCCchhhcC
Q 044133 232 KLEDLSDNKLDGPIPPEL-MNCSKLTTLILG--N----NLLSGSIP-----SQIGKLQKLCYLDLSGNSINGKIPYQLGA 299 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~-~~~~~L~~L~l~--~----~~~~~~~~-----~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 299 (384)
.+++.. ...+ ..+++|+.|+++ + +.+++... ..+..+++|++|++++ .+.+..+..+..
T Consensus 383 ~l~~~~--------~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~ 453 (594)
T 2p1m_B 383 QMTNAA--------LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT 453 (594)
T ss_dssp CCCHHH--------HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH
T ss_pred CcCHHH--------HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH
Confidence 332210 0111 246778888887 3 34442211 1245677888888876 555444455554
Q ss_pred -CCCCcEEeCCCCccccccC----ccccCCCeEEcccCcCCCC
Q 044133 300 -IPGIHTVDLSMNNLSGGIP----VFVRKVPHLDVSGNKFGGE 337 (384)
Q Consensus 300 -~~~L~~L~l~~n~~~~~~~----~~~~~l~~l~l~~~~~~~~ 337 (384)
+++|+.|++++|.+++... ..+++|+.|++++|.+++.
T Consensus 454 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~ 496 (594)
T 2p1m_B 454 YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDK 496 (594)
T ss_dssp HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHH
T ss_pred hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHH
Confidence 7889999999998876443 3368899999999998643
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=1.9e-20 Score=166.94 Aligned_cols=239 Identities=19% Similarity=0.112 Sum_probs=153.7
Q ss_pred CEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccc-cCCcccCCCCCCCE-EECc
Q 044133 8 VHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQING-SIPLEIENLKVLHV-LDLS 85 (384)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~-L~l~ 85 (384)
++++.+++.++. .|..+ .+++++|++++|.++...+++|.++++|++|++++|.+.. +.+..|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 567778877774 34433 3578888888888886666778888888888888887744 34456777777665 4455
Q ss_pred CCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccC-CcCcccCCccccCCc-ccceeecccccccC
Q 044133 86 RNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHS-NRINGSIPLEIGNLN-FLQVLGLSDNKLEG 163 (384)
Q Consensus 86 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 163 (384)
+|++....+..+..+++|++|++++|.+....+..+....++..+++.+ +.+.......+..+. .++.|++++|.++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 5777766677778888888888888887766555555566677777754 455555555555543 46777777777764
Q ss_pred CCCccccCcCCCCeeeccc-ccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCC-CCCCCCCCcc
Q 044133 164 PIPSTIASLVNLKSLSLHY-NNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNN-KLEDLSDNKL 241 (384)
Q Consensus 164 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~ 241 (384)
..+..+ ..++|+++.+.+ |.+.......|..+++|++|++++|.++.+....+.+ |+.|.+.++ .+..+
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~---L~~L~~l~~~~l~~l----- 239 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN---LKKLRARSTYNLKKL----- 239 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT---CCEEECTTCTTCCCC-----
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc---chHhhhccCCCcCcC-----
Confidence 433333 345677777754 4555544456677777777777777777655544443 344443332 12222
Q ss_pred cCCCCccccCCCCCcEEEccCC
Q 044133 242 DGPIPPELMNCSKLTTLILGNN 263 (384)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~l~~~ 263 (384)
+.+..+++|+.+++.++
T Consensus 240 -----P~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 240 -----PTLEKLVALMEASLTYP 256 (350)
T ss_dssp -----CCTTTCCSCCEEECSCH
T ss_pred -----CCchhCcChhhCcCCCC
Confidence 13455677777777553
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.83 E-value=1e-19 Score=162.24 Aligned_cols=240 Identities=17% Similarity=0.137 Sum_probs=166.1
Q ss_pred CeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCccccc-CCcCCCCCCCCCE-EEcC
Q 044133 32 KILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGS-IPSTIGHLKRLRI-LDLS 109 (384)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~-L~l~ 109 (384)
++++.+++.++ .+|..+ .+++++|++++|++..+.+.+|.++++|++|++++|.+... .+.+|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56777777777 444444 25788999999998877777888899999999999887533 3456778887775 4556
Q ss_pred CCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeeccc-ccccCCCCccccCcC-CCCeeecccccccC
Q 044133 110 QNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSD-NKLEGPIPSTIASLV-NLKSLSLHYNNLIG 187 (384)
Q Consensus 110 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 187 (384)
.|+++.+.+..|..+++|+.|++++|.+....+..+.....+..+++.+ +.+.......|..+. .++.|++++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6778877778888888999999988888766666666666777777765 345544444555543 57778888887775
Q ss_pred CCCccccCCCCCCEEEccC-CcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCccc
Q 044133 188 PIPSTLGHLNRLTDLDLSE-NKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLS 266 (384)
Q Consensus 188 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 266 (384)
.....+ ...+|+++.+.+ |.++.+..+.|..+++|+.|++++|.++.++... +.+|+.|...++...
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~-----------~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG-----------LENLKKLRARSTYNL 236 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS-----------CTTCCEEECTTCTTC
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh-----------hccchHhhhccCCCc
Confidence 544444 345677888764 5566666677788888888888888777664322 345666666555333
Q ss_pred CCCCchhcCCccccEEecCCC
Q 044133 267 GSIPSQIGKLQKLCYLDLSGN 287 (384)
Q Consensus 267 ~~~~~~~~~~~~L~~L~l~~n 287 (384)
...| .+..+++|+.+++.++
T Consensus 237 ~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 237 KKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CCCC-CTTTCCSCCEEECSCH
T ss_pred CcCC-CchhCcChhhCcCCCC
Confidence 2333 3666777777777654
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.1e-19 Score=149.76 Aligned_cols=160 Identities=23% Similarity=0.206 Sum_probs=93.7
Q ss_pred CCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCC
Q 044133 174 NLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCS 253 (384)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~ 253 (384)
++++|++++|.+....+..+..+++|++|++++|.++...+..|..+++|++|++++|.+..++. ..+..++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--------~~~~~l~ 100 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPN--------GVFDKLT 100 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------TTTTTCT
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCH--------hHhcCcc
Confidence 45555555555544444444555555555555555554444455555666666666665544322 2234456
Q ss_pred CCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccCccccCCCeEEcccCc
Q 044133 254 KLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIPVFVRKVPHLDVSGNK 333 (384)
Q Consensus 254 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~~~ 333 (384)
+|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+.. ++++.++++.|.
T Consensus 101 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~----~~l~~L~~~~n~ 176 (208)
T 2o6s_A 101 QLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC----PGIRYLSEWINK 176 (208)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT----TTTHHHHHHHHH
T ss_pred CCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC----CCHHHHHHHHHh
Confidence 6666666666666555555666666777777777666555555666677777777777666543 356666677777
Q ss_pred CCCCCCCCCCCC
Q 044133 334 FGGEIPTTLANA 345 (384)
Q Consensus 334 ~~~~~p~~~~~~ 345 (384)
++|.+|...+..
T Consensus 177 ~~g~ip~~~~~l 188 (208)
T 2o6s_A 177 HSGVVRNSAGSV 188 (208)
T ss_dssp CTTTBBCTTSSB
T ss_pred CCceeeccCccc
Confidence 777776655443
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=2.9e-19 Score=147.20 Aligned_cols=158 Identities=27% Similarity=0.292 Sum_probs=72.7
Q ss_pred CCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecc
Q 044133 102 RLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLH 181 (384)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 181 (384)
+|++|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444443333334444444444444444443333333444444444444444443333334444455555555
Q ss_pred cccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEcc
Q 044133 182 YNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILG 261 (384)
Q Consensus 182 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 261 (384)
+|.+....+..+..+++|+.|++++|.++...+..+..+++|+.|++++|.+. ..++.|+.|+++
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---------------~~~~~l~~L~~~ 173 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---------------CTCPGIRYLSEW 173 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---------------CCTTTTHHHHHH
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---------------cCCCCHHHHHHH
Confidence 54444333334445555555555555555444444455555555555555321 113445555555
Q ss_pred CCcccCCCCchhc
Q 044133 262 NNLLSGSIPSQIG 274 (384)
Q Consensus 262 ~~~~~~~~~~~~~ 274 (384)
.|++++..|..++
T Consensus 174 ~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 174 INKHSGVVRNSAG 186 (208)
T ss_dssp HHHCTTTBBCTTS
T ss_pred HHhCCceeeccCc
Confidence 5555544444443
No 99
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.82 E-value=1.3e-18 Score=156.92 Aligned_cols=267 Identities=10% Similarity=0.088 Sum_probs=173.0
Q ss_pred cCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEE
Q 044133 27 RLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRIL 106 (384)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 106 (384)
.+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+......+|.+|++|+.+
T Consensus 111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 346666666643 4555566677765 5777777665 555556666664 577777765 4554555677777777777
Q ss_pred EcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeeccccccc
Q 044133 107 DLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLI 186 (384)
Q Consensus 107 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 186 (384)
+++.|.++.+....|. +.+|+.+.+..+ +..+...+|.++++|+.+++..+ +......+|.. .+|+.+.+. +.+.
T Consensus 186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 7777777666666665 467777777643 55566667777777777777653 34445556665 677777773 3455
Q ss_pred CCCCccccCCCCCCEEEccCCccc-----ccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEcc
Q 044133 187 GPIPSTLGHLNRLTDLDLSENKLV-----GPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILG 261 (384)
Q Consensus 187 ~~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 261 (384)
......|..|++|+.+.+.++... .+...+|.+|++|+.+.+.+ .+..++. .+|.+|++|+.+.+.
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~--------~aF~~c~~L~~l~lp 331 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQ--------GLLGGNRKVTQLTIP 331 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECT--------TTTTTCCSCCEEEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhh--------hhhcCCCCccEEEEC
Confidence 555667777777777777666543 35666777777777777773 3555443 344457777777775
Q ss_pred CCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCC-CCcEEeCCCCccc
Q 044133 262 NNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIP-GIHTVDLSMNNLS 314 (384)
Q Consensus 262 ~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l~~n~~~ 314 (384)
.+ ++.....+|.++ +|+.+++.+|.........|.+++ .+..|++..+.+.
T Consensus 332 ~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 332 AN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 44 555666677777 777777777776655566666663 5667777666543
No 100
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.82 E-value=1.5e-20 Score=166.18 Aligned_cols=104 Identities=18% Similarity=0.204 Sum_probs=89.3
Q ss_pred CCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCc-EEEccCCcccCCCCchh
Q 044133 195 HLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLT-TLILGNNLLSGSIPSQI 273 (384)
Q Consensus 195 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~ 273 (384)
.+++|+.+++++|.++.+...+|.++.+|+.+++.+| +..++. .+|.+|++|+ .+++.+ .++.....+|
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~--------~aF~~~~~L~~~l~l~~-~l~~I~~~aF 293 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQ--------RVFSNCGRLAGTLELPA-SVTAIEFGAF 293 (329)
T ss_dssp HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECT--------TTTTTCTTCCEEEEECT-TCCEECTTTT
T ss_pred hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehH--------HHhhCChhccEEEEEcc-cceEEchhhh
Confidence 3789999999998888888889999999999999987 666654 4556688999 999988 7777788899
Q ss_pred cCCccccEEecCCCcCCCCCchhhcCCCCCcEEeC
Q 044133 274 GKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDL 308 (384)
Q Consensus 274 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 308 (384)
.+|++|+.+++++|.+....+.+|.++++|+.++.
T Consensus 294 ~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 294 MGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 99999999999999998777889999999998864
No 101
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.82 E-value=2.5e-18 Score=155.13 Aligned_cols=266 Identities=11% Similarity=0.063 Sum_probs=214.6
Q ss_pred CCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEE
Q 044133 4 LRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLD 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 83 (384)
+..++++.+.++ ++.+...+|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+..+...+|.+|++|+.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 466777888764 555777889887 7999999765 776788899886 699999987 56667778899999999999
Q ss_pred CcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccC
Q 044133 84 LSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEG 163 (384)
Q Consensus 84 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 163 (384)
+..+.+......+|. +.+|+.+.+..+ ++.+...+|.++++|+.+.+..+ +..+...+|.+ .+|+.+.+.. .+..
T Consensus 187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~ 261 (401)
T 4fdw_A 187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTN 261 (401)
T ss_dssp CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCE
T ss_pred cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccE
Confidence 999988866666676 689999999854 77788889999999999999874 55566777877 7899999954 4665
Q ss_pred CCCccccCcCCCCeeeccccccc-----CCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCC
Q 044133 164 PIPSTIASLVNLKSLSLHYNNLI-----GPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSD 238 (384)
Q Consensus 164 ~~~~~~~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 238 (384)
....+|..+++|+.+.+.++... ......|..|++|+.+.+.+ .+..+...+|.++.+|+.+.+.++ +..++.
T Consensus 262 I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~ 339 (401)
T 4fdw_A 262 IASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINF 339 (401)
T ss_dssp ECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECT
T ss_pred EChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcH
Confidence 67788999999999999887654 35667899999999999984 577788889999999999999665 555544
Q ss_pred CcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCc-cccEEecCCCcCC
Q 044133 239 NKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQ-KLCYLDLSGNSIN 290 (384)
Q Consensus 239 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~ 290 (384)
.+|.++ +|+.+++.++.........|.+++ .+..|.+..+.+.
T Consensus 340 --------~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 340 --------SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp --------TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred --------HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 455668 999999999988877777887774 7888888776543
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=1.7e-18 Score=143.59 Aligned_cols=137 Identities=21% Similarity=0.271 Sum_probs=92.2
Q ss_pred CCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCC
Q 044133 173 VNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNC 252 (384)
Q Consensus 173 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 252 (384)
++++.|++++|.+....+..|..+++|+.|++++|.++...+..|..+++|+.|++++|.+..++. ..+..+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~--------~~f~~l 103 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK--------SLFEGL 103 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCT--------TTTTTC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCH--------hHccCC
Confidence 355666666666655545556666666666666666666666666677777777777776665433 234456
Q ss_pred CCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCcccccc
Q 044133 253 SKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGI 317 (384)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 317 (384)
++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|++.+..
T Consensus 104 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 104 FSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSG
T ss_pred CCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCC
Confidence 77777777777777666667777777777777777777666666777777777777777776644
No 103
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=3.5e-19 Score=168.74 Aligned_cols=193 Identities=26% Similarity=0.334 Sum_probs=140.3
Q ss_pred CCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEE
Q 044133 28 LSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILD 107 (384)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 107 (384)
+..+..+.+..+.+.... .+..++.|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|+
T Consensus 20 l~~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 20 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 345566667666665433 256778899999999988744 257788999999999998875433 77888999999
Q ss_pred cCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccC
Q 044133 108 LSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIG 187 (384)
Q Consensus 108 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 187 (384)
+++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+..
T Consensus 94 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 94 LDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp CCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 999888753 3677788888888888888753 4577778888888888877654 567777777888877777765
Q ss_pred CCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCC
Q 044133 188 PIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDL 236 (384)
Q Consensus 188 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 236 (384)
..+ +..+++|+.|++++|.++.. ..+..+++|+.|++++|.+...
T Consensus 168 ~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 168 IVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred chh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 433 66777777777777777654 3466677777777777766554
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=1.6e-18 Score=164.20 Aligned_cols=195 Identities=25% Similarity=0.343 Sum_probs=152.9
Q ss_pred EeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcc
Q 044133 10 LDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEI 89 (384)
Q Consensus 10 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 89 (384)
+.+..+.+++. ..+..+++|+.|++++|.+... + .+..+++|+.|++++|.+....+ +..+++|+.|++++|.+
T Consensus 26 l~l~~~~i~~~--~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCSCTTSE--ECHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HhccCCCcccc--cchhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 34555555533 2356788999999998888744 2 58889999999999998875543 78889999999999988
Q ss_pred cccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccc
Q 044133 90 GGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTI 169 (384)
Q Consensus 90 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 169 (384)
... ..+..+++|++|++++|.+... ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+ +
T Consensus 100 ~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l 171 (605)
T 1m9s_A 100 KDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 171 (605)
T ss_dssp CCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G
T ss_pred CCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h
Confidence 742 3688889999999999988754 4577889999999999998865 568888999999999998876544 8
Q ss_pred cCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCC
Q 044133 170 ASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHL 220 (384)
Q Consensus 170 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 220 (384)
..+++|+.|++++|.+... ..+..+++|+.|++++|.+.......+..+
T Consensus 172 ~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 172 AGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp TTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred ccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccE
Confidence 8889999999999988754 468889999999999998876544444333
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=8.2e-19 Score=152.02 Aligned_cols=171 Identities=27% Similarity=0.353 Sum_probs=86.2
Q ss_pred CCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEE
Q 044133 51 HLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTL 130 (384)
Q Consensus 51 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 130 (384)
.+++|+.|++++|.+... ..+..+++|++|++++|.+....+ +..+++|++|++++|.+... ..+..+++|+.|
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 444555555555544422 124445555555555555442221 44555555555555554432 124455555555
Q ss_pred EccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCccc
Q 044133 131 NMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLV 210 (384)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 210 (384)
++++|.+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+....+ +..+++|+.|++++|.++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 5555555432 2344555555555555555433 345555555555555555553322 555556666666666555
Q ss_pred ccCCccCCCCCCCCeeecCCCCCCC
Q 044133 211 GPIPSSVGHLNFLQDLDLSNNKLED 235 (384)
Q Consensus 211 ~~~~~~~~~l~~L~~L~l~~n~~~~ 235 (384)
... .+..+++|+.|++++|.+..
T Consensus 192 ~l~--~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 DLR--ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp BCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred CCh--hhccCCCCCEEECcCCcccC
Confidence 432 35555666666666665544
No 106
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.79 E-value=2.5e-19 Score=158.38 Aligned_cols=264 Identities=13% Similarity=0.073 Sum_probs=188.5
Q ss_pred CCCCCEEeccCCcCc--cCCChhhhcCCCCCeeeccCCcccccCChhhhC--------CCCCcEEeccCCcccccCCccc
Q 044133 4 LRNLVHLDLSNNHLT--GHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSH--------LTQLTTLAIASNQINGSIPLEI 73 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~L~~L~l~~~~~~~~~~~~~ 73 (384)
+++|++|++++|++. ...... ++.++.+.+..+. +...+|.+ |++|+.+++.+ .+..+...+|
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~---I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF 120 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANF---VPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAF 120 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTE---ECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTT
T ss_pred hccCeEEecCcceeEEecCcccc---ccccccccccccc---cCHHHhcccccccccccCCCcEEECCc-cccchhHHHh
Confidence 678999999999887 222222 2234555555553 44567788 99999999998 7877888889
Q ss_pred CCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcc----cccCCcCCcCCCCCC-EEEccCCcCc-ccCCccccC
Q 044133 74 ENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKL----VGPIPSSVGPLTQLT-TLNMHSNRIN-GSIPLEIGN 147 (384)
Q Consensus 74 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~~l~~l~~L~-~L~l~~~~~~-~~~~~~~~~ 147 (384)
.+|++|+.+++.++.+....+.+|..+.++..+....... .......|.++..|+ .+.+...... ......-..
T Consensus 121 ~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~ 200 (329)
T 3sb4_A 121 KGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQ 200 (329)
T ss_dssp TTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCC
T ss_pred hcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccC
Confidence 9999999999999988777788888888888877766332 223344566677776 4544432211 000001113
Q ss_pred CcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCC-ee
Q 044133 148 LNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQ-DL 226 (384)
Q Consensus 148 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~-~L 226 (384)
..+++.+.+.++-...........+++|+.+++.+|.++......|..|.+|+++++.+| +..+...+|.++++|+ .+
T Consensus 201 ~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 201 PRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEE
Confidence 455666766654221111111123789999999998888888889999999999999987 7778888999999999 99
Q ss_pred ecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEec
Q 044133 227 DLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDL 284 (384)
Q Consensus 227 ~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 284 (384)
++.+ .+..++. .+|.+|++|+.+++.++.++.....+|.++++|+.+..
T Consensus 280 ~l~~-~l~~I~~--------~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 280 ELPA-SVTAIEF--------GAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EECT-TCCEECT--------TTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEcc-cceEEch--------hhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9988 6666654 45667899999999999999888889999999998864
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=1.2e-18 Score=150.97 Aligned_cols=186 Identities=25% Similarity=0.367 Sum_probs=148.1
Q ss_pred eccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCccc
Q 044133 11 DLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIG 90 (384)
Q Consensus 11 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 90 (384)
.+..+.+++. ..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 30 ~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 103 (291)
T 1h6t_A 30 NLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK 103 (291)
T ss_dssp HTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred HhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC
Confidence 3444444432 2356788999999999888754 347888999999999998875543 788999999999999887
Q ss_pred ccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCcccc
Q 044133 91 GSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIA 170 (384)
Q Consensus 91 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 170 (384)
.. ..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+ +.
T Consensus 104 ~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~ 175 (291)
T 1h6t_A 104 DL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA 175 (291)
T ss_dssp CG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hc
Confidence 42 3488889999999999988754 4677889999999999998865 568888999999999998876543 88
Q ss_pred CcCCCCeeecccccccCCCCccccCCCCCCEEEccCCccccc
Q 044133 171 SLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGP 212 (384)
Q Consensus 171 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 212 (384)
.+++|+.|++++|.+... ..+..+++|+.|++++|.+...
T Consensus 176 ~l~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp TCTTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEECC
T ss_pred CCCccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccCC
Confidence 899999999999988754 3488899999999999988754
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=3.6e-18 Score=141.64 Aligned_cols=133 Identities=29% Similarity=0.320 Sum_probs=65.7
Q ss_pred CCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEcc
Q 044133 54 QLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMH 133 (384)
Q Consensus 54 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (384)
+|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.++...+..|..+++|+.|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 44445555544444444444444555555555554444444444455555555555555444444444445555555555
Q ss_pred CCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeeccccccc
Q 044133 134 SNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLI 186 (384)
Q Consensus 134 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 186 (384)
+|.+....+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 55555444444555555555555555554444444555555555555555443
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.8e-18 Score=154.77 Aligned_cols=176 Identities=28% Similarity=0.253 Sum_probs=118.6
Q ss_pred CEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhh-CCCCCcEEeccCCcccccCCcccCCCCCCCEEECcC
Q 044133 8 VHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLS-HLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSR 86 (384)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 86 (384)
++++++++.++.. |..+. +.+++|++++|.++...+..|. ++++|+.|++++|.+....+..|.++++|++|++++
T Consensus 21 ~~l~c~~~~l~~i-P~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSC-CSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcc-CccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 4677777777643 33222 3577777777777766666666 777777777777777766666677777777777777
Q ss_pred CcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccc---cCCcccceeecccccccC
Q 044133 87 NEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEI---GNLNFLQVLGLSDNKLEG 163 (384)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 163 (384)
|.+....+..+..+++|++|++++|.+....+..|..+++|+.|++++|.+.......+ ..+++|+.|++++|.+..
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77775555667777777777777777776666677777777777777777775544444 456777777777777765
Q ss_pred CCCccccCcCC--CCeeeccccccc
Q 044133 164 PIPSTIASLVN--LKSLSLHYNNLI 186 (384)
Q Consensus 164 ~~~~~~~~~~~--L~~L~l~~~~~~ 186 (384)
.....+..++. ++.|++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 54455555554 366777776654
No 110
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=5.1e-18 Score=159.12 Aligned_cols=193 Identities=23% Similarity=0.312 Sum_probs=114.7
Q ss_pred CCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecc
Q 044133 78 VLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLS 157 (384)
Q Consensus 78 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 157 (384)
+++.|++++|.+.. +|..+ +++|++|++++|.++.+ + ..+++|+.|++++|.++.+ +. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~i-p---~~l~~L~~L~Ls~N~l~~i-p~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-P---ELPASLEYLDACDNRLSTL-PE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCC-CC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCccc-c---cccCCCCEEEccCCCCCCc-ch-hhc--CCCEEECC
Confidence 78888888887774 44444 37788888888887733 3 3467788888888877753 33 433 77777777
Q ss_pred cccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCC
Q 044133 158 DNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLS 237 (384)
Q Consensus 158 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 237 (384)
+|.++. ++. .+++|+.|++++|.++.. +. .+++|+.|++++|.++.+.. +. ++|+.|++++|.++.++
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~L~~lp~--l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTML-PE---LPTSLEVLSVRNNQLTFLPE--LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC--CC--TTCCEEECCSSCCSSCC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcC-CC---cCCCcCEEECCCCCCCCcch--hh--CCCCEEECcCCCCCchh
Confidence 777764 333 456777777777776642 22 45667777777776665332 33 66777777776666543
Q ss_pred CCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcC
Q 044133 238 DNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGA 299 (384)
Q Consensus 238 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~ 299 (384)
. +.+ ......+.|+.|++++|.++. .|..+..+++|+.|++++|.+.+..|..+..
T Consensus 197 ~--~~~---~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 197 A--VPV---RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp C--CC-----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred h--HHH---hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence 3 111 001112223666666666653 3444444666666666666666555555443
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.8e-18 Score=154.79 Aligned_cols=180 Identities=24% Similarity=0.190 Sum_probs=126.6
Q ss_pred CEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCcccc-CCcccceeecccccccCCCCccccCcCCCCeeeccc
Q 044133 104 RILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIG-NLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHY 182 (384)
Q Consensus 104 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 182 (384)
+.++++++.++.+ |..+ .+.++.|++++|.++...+..+. .+++|+.|++++|.+....+..|..+++|+.|++++
T Consensus 21 ~~l~c~~~~l~~i-P~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNV-PQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSC-CSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcc-CccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 5788888877643 3333 24578888888888776666666 778888888888887766666777888888888888
Q ss_pred ccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccC
Q 044133 183 NNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGN 262 (384)
Q Consensus 183 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 262 (384)
|.+....+..|..+++|+.|++++|.+....+..|..+++|+.|++++|.+..++...+.+ +..+++|+.|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-----~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKD-----GNKLPKLMLLDLSS 172 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC---------CTTCCEEECCS
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcC-----cccCCcCCEEECCC
Confidence 8777666666777888888888888877777777777788888888888777654322211 13467777777777
Q ss_pred CcccCCCCchhcCCcc--ccEEecCCCcCCC
Q 044133 263 NLLSGSIPSQIGKLQK--LCYLDLSGNSING 291 (384)
Q Consensus 263 ~~~~~~~~~~~~~~~~--L~~L~l~~n~~~~ 291 (384)
|.+++..+..+..++. ++.|++++|.+..
T Consensus 173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp SCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 7777655556666665 3667777777664
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=4.6e-18 Score=141.01 Aligned_cols=137 Identities=19% Similarity=0.226 Sum_probs=91.9
Q ss_pred CCCeeecccccccCCCC-ccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCC
Q 044133 174 NLKSLSLHYNNLIGPIP-STLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNC 252 (384)
Q Consensus 174 ~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 252 (384)
.++.|++++|.+....+ ..|..+++|+.|++++|.++.+.+..|..+++|++|++++|.+..+.. ..+..+
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l 104 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH--------KMFKGL 104 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG--------GGGTTC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH--------hHhcCC
Confidence 34555565555554322 345566666777776666666666666677777777777776654432 345556
Q ss_pred CCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccC
Q 044133 253 SKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP 318 (384)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 318 (384)
++|++|++++|.+++..+..|..+++|++|++++|++.+..|..|..+++|+.|++++|++.+.++
T Consensus 105 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 105 ESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred cCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 777777777777776666777777777777777777776667777777778888888887776554
No 113
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.77 E-value=2.7e-17 Score=149.00 Aligned_cols=286 Identities=11% Similarity=0.057 Sum_probs=147.4
Q ss_pred CCCCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCE
Q 044133 2 GRLRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHV 81 (384)
Q Consensus 2 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 81 (384)
..|.+|+++.+..+ ++.+...+|.+|++|+.+++..+ ++.+...+|.+|.+|+.+.+..+ +..+...+|.++..++.
T Consensus 68 ~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~ 144 (394)
T 4fs7_A 68 QGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEI 144 (394)
T ss_dssp TTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEE
T ss_pred hCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccccccc
Confidence 44555555555432 44444455555555555555432 33344445555555555544432 22223333333332222
Q ss_pred EECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccc
Q 044133 82 LDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKL 161 (384)
Q Consensus 82 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 161 (384)
..... .......+|.+|++|+.+.+..+. ..+....|.++.+|+.+.+..+ +..+...+|.++..|+.+.+..+..
T Consensus 145 ~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~ 220 (394)
T 4fs7_A 145 TIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY 220 (394)
T ss_dssp ECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred ccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence 21111 112334567778888888887653 3466677888888888887655 4445556677777777777665432
Q ss_pred cCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcc
Q 044133 162 EGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKL 241 (384)
Q Consensus 162 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 241 (384)
. . ........+|+.+.+... ........+..+..++.+.+..+.. .+....|..+..++.+......+.+
T Consensus 221 ~-i-~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~------ 290 (394)
T 4fs7_A 221 Y-L-GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPE------ 290 (394)
T ss_dssp E-E-CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECT------
T ss_pred E-e-ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeecc------
Confidence 2 1 122233456666666432 2333445566666677666655432 2444555556666655554433221
Q ss_pred cCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCC
Q 044133 242 DGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMN 311 (384)
Q Consensus 242 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 311 (384)
..+..+.+|+.+.+.++ ++.....+|.++.+|+.+++.++ +......+|.+|.+|+.+++..+
T Consensus 291 -----~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 291 -----KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp -----TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred -----ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 22334555555555443 33344455555555555555432 33333455555555555555444
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=8.2e-18 Score=139.49 Aligned_cols=152 Identities=21% Similarity=0.228 Sum_probs=90.4
Q ss_pred CEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCC-hhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcC
Q 044133 8 VHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVP-STLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSR 86 (384)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 86 (384)
++++++++.++.. |..+ .+.+++|++++|.++...+ ..|.++++|+.|++++|.+....+..|.++++|++|++++
T Consensus 14 ~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4566666666533 3222 2345666666666665422 3456666666666666666655555666666666666666
Q ss_pred CcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeeccccccc
Q 044133 87 NEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLE 162 (384)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 162 (384)
|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 6666444455666666666666666666555556666666666666666666555555555666666666665543
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=1.9e-17 Score=138.28 Aligned_cols=155 Identities=23% Similarity=0.251 Sum_probs=102.3
Q ss_pred ceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCC
Q 044133 152 QVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNN 231 (384)
Q Consensus 152 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n 231 (384)
+.++.+++.+.. .+..+ .++|+.|++++|.+....+..+..+++|++|++++|.+..+.+..|..+++|+.|++++|
T Consensus 22 ~~v~c~~~~l~~-ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHAS-VPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCc-cCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 445555544442 22222 256666666666666555556666667777777777666555566667777777777777
Q ss_pred CCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCC
Q 044133 232 KLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMN 311 (384)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 311 (384)
.+..++. ..+..+++|++|++++|+++ ..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|
T Consensus 99 ~l~~l~~--------~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 99 QLTVLPS--------AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CCCCCCT--------TTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred cCCccCh--------hHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 6655432 23445677777777777777 45566677788888888888887666667777888888888888
Q ss_pred ccccccC
Q 044133 312 NLSGGIP 318 (384)
Q Consensus 312 ~~~~~~~ 318 (384)
++.+.++
T Consensus 170 ~~~c~c~ 176 (229)
T 3e6j_A 170 PWDCECR 176 (229)
T ss_dssp CBCTTBG
T ss_pred CccCCcc
Confidence 8877654
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.76 E-value=3.2e-17 Score=153.69 Aligned_cols=187 Identities=23% Similarity=0.336 Sum_probs=132.3
Q ss_pred CCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEcc
Q 044133 54 QLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMH 133 (384)
Q Consensus 54 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (384)
+|+.|++++|.+.. .|..+ .++|++|++++|.+. .+| ..+++|++|++++|.+++ .+. +.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888775 34433 267888888888887 444 446888888888888876 333 443 88888888
Q ss_pred CCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccC
Q 044133 134 SNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPI 213 (384)
Q Consensus 134 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 213 (384)
+|.++++.. .+++|+.|++++|.++. .+. .+++|+.|++++|.++. .+. +. ++|+.|++++|.++.+.
T Consensus 129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp 196 (571)
T 3cvr_A 129 NNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLP 196 (571)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCC
T ss_pred CCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchh
Confidence 888876433 56788888888888775 333 46788888888888775 333 44 78888888888887443
Q ss_pred CccCCCCCCC-------CeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCC
Q 044133 214 PSSVGHLNFL-------QDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKL 276 (384)
Q Consensus 214 ~~~~~~l~~L-------~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 276 (384)
. +.. +| +.|++++|.++.++ ..+..+++|+.|++++|.+++..+..+..+
T Consensus 197 ~--~~~--~L~~~~~~L~~L~Ls~N~l~~lp---------~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 197 A--VPV--RNHHSEETEIFFRCRENRITHIP---------ENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C--CC----------CCEEEECCSSCCCCCC---------GGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred h--HHH--hhhcccccceEEecCCCcceecC---------HHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 3 433 66 88888888777543 445557888888888888887666666543
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=5.5e-18 Score=138.16 Aligned_cols=154 Identities=15% Similarity=0.223 Sum_probs=121.2
Q ss_pred hhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCC
Q 044133 25 LGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLR 104 (384)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 104 (384)
..++++|++|++++|.+. ..+ .+..+++|++|++++|.+.. ...+..+++|++|++++|.+....+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 467888899999888887 333 57888889999999886642 34677888899999998888866677788889999
Q ss_pred EEEcCCCcccccCCcCCcCCCCCCEEEccCCc-CcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccc
Q 044133 105 ILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNR-INGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYN 183 (384)
Q Consensus 105 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 183 (384)
+|++++|.+++..+..+..+++|+.|++++|. +... + .+..+++|++|++++|.+.+. + .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-M-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-G-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-H-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCc
Confidence 99999998887666778888899999999887 6543 3 577888899999999888753 2 6778889999999888
Q ss_pred ccc
Q 044133 184 NLI 186 (384)
Q Consensus 184 ~~~ 186 (384)
.+.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 765
No 118
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=2.9e-17 Score=137.10 Aligned_cols=133 Identities=27% Similarity=0.304 Sum_probs=69.9
Q ss_pred CCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEc
Q 044133 53 TQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNM 132 (384)
Q Consensus 53 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (384)
++|++|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 44555555555555444444555555555555555554333334455555555555555555444444555555555555
Q ss_pred cCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeeccccccc
Q 044133 133 HSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLI 186 (384)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 186 (384)
++|.+. ..+..+..+++|++|++++|.+....+..+..+++|+.|++.+|.+.
T Consensus 120 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 120 CCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 555555 23344455555555555555555444444555555666666555544
No 119
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.74 E-value=8.9e-16 Score=138.99 Aligned_cols=308 Identities=9% Similarity=0.107 Sum_probs=176.0
Q ss_pred CCCEEeccCCcCccCCChhhhcCCCCCeeeccCC---cccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEE
Q 044133 6 NLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSN---SLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVL 82 (384)
Q Consensus 6 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 82 (384)
.|+++.+..+ ++.+...+|.+|.+|+.+.+..+ .++.+...+|.+|.+|+.+.+..+ +..+....|..+.+|+.+
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i 142 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTV 142 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccc
Confidence 3666666543 44455566666666666666543 244445556666666666666543 333444556666666666
Q ss_pred ECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeeccccccc
Q 044133 83 DLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLE 162 (384)
Q Consensus 83 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 162 (384)
.+... +......++..+..|+.+.+..+ ++.+...+|.. ..|+.+.+..+.. .....++..+.+++..........
T Consensus 143 ~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~~~ 218 (394)
T 4gt6_A 143 TIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECFALSTITSDSESYP 218 (394)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSSSC
T ss_pred cccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhccccceecccccccc
Confidence 66543 22244455666666666666543 33344444432 4566666554322 233445555555555544433221
Q ss_pred CCCCccc-------------cCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecC
Q 044133 163 GPIPSTI-------------ASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLS 229 (384)
Q Consensus 163 ~~~~~~~-------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 229 (384)
......+ .....+..+.+. +.+.......|..+..|+.+.+.++.. .+...+|..+++|+.+.+.
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip-~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~ 296 (394)
T 4gt6_A 219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIP-NGVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS 296 (394)
T ss_dssp BSSSCEEEECTTSCEEEEECCTTCCCSEEECC-TTEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC
T ss_pred cccceeecccccccccccccccccccceEEcC-CcceEcccceeeecccccEEecccccc-eecCcccccccccccccCC
Confidence 1100000 011122233332 123334456788888899998875533 3667788888899998886
Q ss_pred CCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCC
Q 044133 230 NNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLS 309 (384)
Q Consensus 230 ~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 309 (384)
. .+..++. ..|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+..+ +......+|.+|++|+.+++.
T Consensus 297 ~-~i~~I~~--------~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 297 S-RITELPE--------SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp T-TCCEECT--------TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEES
T ss_pred C-cccccCc--------eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEEC
Confidence 3 3444443 45666889999999765 66577788999999999999765 665667889999999999998
Q ss_pred CCccccccCccccCCCeEEcccC
Q 044133 310 MNNLSGGIPVFVRKVPHLDVSGN 332 (384)
Q Consensus 310 ~n~~~~~~~~~~~~l~~l~l~~~ 332 (384)
++......-....+|+.+.+..+
T Consensus 366 ~~~~~~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 366 GSRSQWNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp SCHHHHHTCBCCCCC--------
T ss_pred CceeehhhhhccCCCCEEEeCCC
Confidence 88644322233345666655543
No 120
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.9e-17 Score=134.95 Aligned_cols=154 Identities=19% Similarity=0.250 Sum_probs=130.1
Q ss_pred hhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCC
Q 044133 49 LSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLT 128 (384)
Q Consensus 49 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 128 (384)
...+++|++|++++|.+.+. + .+..+++|++|++++|.+.. +..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 40 ~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVTDL-T-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHHTCCEEEEESSCCSCC-T-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhhcCCccEEeccCCCccCh-H-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 46788999999999998843 3 67889999999999997653 34688899999999999999877788899999999
Q ss_pred EEEccCCcCcccCCccccCCcccceeeccccc-ccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCC
Q 044133 129 TLNMHSNRINGSIPLEIGNLNFLQVLGLSDNK-LEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSEN 207 (384)
Q Consensus 129 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 207 (384)
.|++++|.+.+..+..+..+++|++|++++|. +.. .+ .+..+++|+.|++++|.+.... .+..+++|+.|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence 99999999987677788899999999999998 654 33 6889999999999999988543 6788999999999999
Q ss_pred ccc
Q 044133 208 KLV 210 (384)
Q Consensus 208 ~~~ 210 (384)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 865
No 121
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.73 E-value=4.4e-16 Score=141.02 Aligned_cols=292 Identities=10% Similarity=0.024 Sum_probs=212.0
Q ss_pred CccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcC
Q 044133 17 LTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPST 96 (384)
Q Consensus 17 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 96 (384)
++.+...+|.+|.+|+.+.+.. .++.+...+|.+|.+|+.+++.++ +..+...+|.++..|+.+.+..+ +......+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 4556778899999999999964 577677889999999999999865 55566778999999998887654 44355567
Q ss_pred CCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCC
Q 044133 97 IGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLK 176 (384)
Q Consensus 97 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 176 (384)
|.++..++...... .......+|.++++|+.+.+.++. ..+....|.++.+|+.+.+..+ +......+|..+..|+
T Consensus 136 F~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~ 211 (394)
T 4fs7_A 136 FKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLE 211 (394)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCC
T ss_pred eecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccc
Confidence 77765444333332 233556789999999999997654 4466778999999999999875 4445667889999999
Q ss_pred eeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCc
Q 044133 177 SLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLT 256 (384)
Q Consensus 177 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~ 256 (384)
.+.+..+... . ...+..+..|+.+.+... .+.+....+..+..++.+.+..+.. .++. ..+..++.++
T Consensus 212 ~i~~~~~~~~-i-~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~-~i~~--------~~F~~~~~l~ 279 (394)
T 4fs7_A 212 NMEFPNSLYY-L-GDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKL-RIGG--------SLFYNCSGLK 279 (394)
T ss_dssp BCCCCTTCCE-E-CTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTC-EECS--------CTTTTCTTCC
T ss_pred eeecCCCceE-e-ehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcc-eeec--------cccccccccc
Confidence 9988765432 2 223445678999998754 3446667889999999999987632 2322 4466688898
Q ss_pred EEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccC---ccccCCCeEEcccC
Q 044133 257 TLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP---VFVRKVPHLDVSGN 332 (384)
Q Consensus 257 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~---~~~~~l~~l~l~~~ 332 (384)
.+......+ ...+|..+.+|+.+.+.++ +......+|.++.+|+.+++.++ ++.... ....+|+.+.+..+
T Consensus 280 ~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 280 KVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp EEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred eeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 888876543 3457889999999999875 55456788999999999999765 332222 33457787777544
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=1.2e-17 Score=142.34 Aligned_cols=171 Identities=23% Similarity=0.325 Sum_probs=117.1
Q ss_pred cCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEE
Q 044133 27 RLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRIL 106 (384)
Q Consensus 27 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 106 (384)
++.++..++++.+.++... .+..+++|+.|++++|.+.+. + .+..+++|++|++++|.+....+ +..+++|++|
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 4555666677777666432 466677777777777776643 2 56677777777777777764332 6677777777
Q ss_pred EcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeeccccccc
Q 044133 107 DLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLI 186 (384)
Q Consensus 107 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 186 (384)
++++|++++... +.. ++|+.|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.
T Consensus 91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 91 SVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp ECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCC
T ss_pred ECCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCc
Confidence 777777764322 222 7777788887777653 3467777788888888877654 35777788888888888777
Q ss_pred CCCCccccCCCCCCEEEccCCccccc
Q 044133 187 GPIPSTLGHLNRLTDLDLSENKLVGP 212 (384)
Q Consensus 187 ~~~~~~~~~~~~L~~L~l~~~~~~~~ 212 (384)
.. ..+..+++|+.|++++|.++..
T Consensus 164 ~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 164 NT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ch--HHhccCCCCCEEeCCCCcccCC
Confidence 55 5577788888888888877644
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.72 E-value=1.3e-17 Score=142.13 Aligned_cols=166 Identities=23% Similarity=0.332 Sum_probs=100.9
Q ss_pred CCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcC
Q 044133 7 LVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSR 86 (384)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 86 (384)
+..++++++.+++.. .+.++++|++|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 344555666555332 456666777777776666533 2 46666677777777766654332 66667777777777
Q ss_pred CcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCC
Q 044133 87 NEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIP 166 (384)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 166 (384)
|.+... +. +.. ++|++|++++|.+++. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+.
T Consensus 95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 95 NRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--GGGGGCTTCCEEECTTSCCCBC--
T ss_pred CccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--hHHccCCCCCEEECCCCcCcch--
Confidence 666532 22 222 6677777777766543 2456666777777777766644 2456666677777777666644
Q ss_pred ccccCcCCCCeeecccccccC
Q 044133 167 STIASLVNLKSLSLHYNNLIG 187 (384)
Q Consensus 167 ~~~~~~~~L~~L~l~~~~~~~ 187 (384)
..+..+++|+.|++++|.+..
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEEC
T ss_pred HHhccCCCCCEEeCCCCcccC
Confidence 456666667777776666653
No 124
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.68 E-value=1.6e-14 Score=130.74 Aligned_cols=292 Identities=11% Similarity=0.121 Sum_probs=210.3
Q ss_pred CCCCCCCCEEeccCC---cCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCC
Q 044133 1 MGRLRNLVHLDLSNN---HLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLK 77 (384)
Q Consensus 1 ~~~~~~L~~L~l~~~---~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 77 (384)
|..|.+|+.+.+..+ .++.+...+|.+|.+|+.+.+..+ ++.+...+|.+|.+|+.+.+..+ ...+....|.++.
T Consensus 83 F~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~ 160 (394)
T 4gt6_A 83 FYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCY 160 (394)
T ss_dssp TTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred hhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhcccccccccce-eeeecccceeccc
Confidence 678999999999875 367677889999999999998654 56577789999999999999865 3446677899999
Q ss_pred CCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccc------------
Q 044133 78 VLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEI------------ 145 (384)
Q Consensus 78 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~------------ 145 (384)
.|+.+.+..+ +......+|.. ..|+.+.+..+- ......++..+..+.................+
T Consensus 161 ~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~-~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (394)
T 4gt6_A 161 SLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKV-TRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIR 237 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTC-CEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEE
T ss_pred ccccccccce-eeEeccccccc-cceeEEEECCcc-cccccchhhhccccceecccccccccccceeecccccccccccc
Confidence 9999999765 44355556654 679999998754 34667788889999888766554332111111
Q ss_pred -cCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCC
Q 044133 146 -GNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQ 224 (384)
Q Consensus 146 -~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 224 (384)
.....+..+.+.. .+......+|..+..|+.+.+..+. .......|..++.|+.+.+. +.+..+...+|.++.+|+
T Consensus 238 ~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~ 314 (394)
T 4gt6_A 238 YPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLK 314 (394)
T ss_dssp CCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCC
T ss_pred cccccccceEEcCC-cceEcccceeeecccccEEeccccc-ceecCcccccccccccccCC-CcccccCceeecCCCCcC
Confidence 1122334444433 2333456788999999999997543 34566788999999999997 456667788999999999
Q ss_pred eeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCc
Q 044133 225 DLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIH 304 (384)
Q Consensus 225 ~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 304 (384)
.+.+..+ ++.++. .+|.+|.+|+.+.+..+ ++.....+|.+|++|+.+++.++... ..++..+.+|+
T Consensus 315 ~i~lp~~-v~~I~~--------~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~ 381 (394)
T 4gt6_A 315 SIDIPEG-ITQILD--------DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQ 381 (394)
T ss_dssp EEECCTT-CCEECT--------TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC-
T ss_pred EEEeCCc-ccEehH--------hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCC
Confidence 9999764 555544 45667999999999765 66678889999999999999988644 35677888999
Q ss_pred EEeCCCCcc
Q 044133 305 TVDLSMNNL 313 (384)
Q Consensus 305 ~L~l~~n~~ 313 (384)
.+.+..+.+
T Consensus 382 ~i~i~~~~~ 390 (394)
T 4gt6_A 382 NLPVAPGSI 390 (394)
T ss_dssp ---------
T ss_pred EEEeCCCCE
Confidence 988876643
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.66 E-value=2.7e-16 Score=127.47 Aligned_cols=155 Identities=26% Similarity=0.351 Sum_probs=71.0
Q ss_pred CCCeeecccccccCCCCc-cccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCC
Q 044133 174 NLKSLSLHYNNLIGPIPS-TLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNC 252 (384)
Q Consensus 174 ~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~ 252 (384)
++++|++++|.+....+. .+..+++|++|++++|.++...+..|..+++|++|++++|.+..+.. ..+..+
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l 101 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISN--------KMFLGL 101 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECS--------SSSTTC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCH--------HHhcCC
Confidence 444444444444433221 24444555555555555544444445555555555555554443321 223334
Q ss_pred CCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCch-hhcCCCCCcEEeCCCCccccccCccccCCCeEEccc
Q 044133 253 SKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPY-QLGAIPGIHTVDLSMNNLSGGIPVFVRKVPHLDVSG 331 (384)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~l~l~~ 331 (384)
++|++|++++|++++..+..+..+++|++|++++|.+.+..+. .+. ..++...+.++...+..|..+......++..
T Consensus 102 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~~~~C~~P~~l~~~~l~~l~~ 179 (192)
T 1w8a_A 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGGAARCGAPSKVRDVQIKDLPH 179 (192)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGGGCBBCSSTTTTTSBGGGSCT
T ss_pred CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCCCCCCCCChHHcCCChhhCcH
Confidence 5555555555555544455555555555555555555543221 110 0111112333444445555555555555555
Q ss_pred CcCCCCC
Q 044133 332 NKFGGEI 338 (384)
Q Consensus 332 ~~~~~~~ 338 (384)
+.++|..
T Consensus 180 ~~~~C~~ 186 (192)
T 1w8a_A 180 SEFKCSS 186 (192)
T ss_dssp TTCCCCC
T ss_pred hhcCcCC
Confidence 5555443
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.5e-16 Score=124.89 Aligned_cols=133 Identities=21% Similarity=0.207 Sum_probs=91.1
Q ss_pred CCCCCeeeccCCccc-ccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEE
Q 044133 28 LSKLKILNLSSNSLV-GNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRIL 106 (384)
Q Consensus 28 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 106 (384)
.++|++|++++|.+. +..+..+..+++|+.|++++|.+... ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 356777777777766 44555566777777777777776644 556677777777777777765455555557777777
Q ss_pred EcCCCcccccCC-cCCcCCCCCCEEEccCCcCcccCC---ccccCCcccceeeccccccc
Q 044133 107 DLSQNKLVGPIP-SSVGPLTQLTTLNMHSNRINGSIP---LEIGNLNFLQVLGLSDNKLE 162 (384)
Q Consensus 107 ~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 162 (384)
++++|.+++... ..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 777777765422 566677777788887777775544 36677778888888777655
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=2.7e-18 Score=161.78 Aligned_cols=122 Identities=28% Similarity=0.330 Sum_probs=82.1
Q ss_pred CCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecc
Q 044133 102 RLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLH 181 (384)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 181 (384)
.|+.|++++|.++++ +. +..+++|+.|++++|.++ ..|..+..+++|+.|++++|.++. .+ .+..+++|+.|+++
T Consensus 442 ~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 467777777777643 33 666777777777777776 445567777777777777777764 34 67777777777777
Q ss_pred cccccCCC-CccccCCCCCCEEEccCCcccccCCcc---CCCCCCCCeeec
Q 044133 182 YNNLIGPI-PSTLGHLNRLTDLDLSENKLVGPIPSS---VGHLNFLQDLDL 228 (384)
Q Consensus 182 ~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~l~~L~~L~l 228 (384)
+|.+.... +..+..+++|+.|++++|.++...+.. +..+++|+.|++
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77777654 667777777777777777776543321 233677777653
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=6.8e-18 Score=159.03 Aligned_cols=193 Identities=20% Similarity=0.193 Sum_probs=134.9
Q ss_pred cCCCCCCEEEccCCcCcccCCccccCCcccceeeccccc-------------ccCCCCccccCcCCCCeee-cccccccC
Q 044133 122 GPLTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNK-------------LEGPIPSTIASLVNLKSLS-LHYNNLIG 187 (384)
Q Consensus 122 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~L~~L~-l~~~~~~~ 187 (384)
..+++|+.|++++|.++ ..|..++.+++|+.|++++|. ..+..+..+..+++|+.|+ ++.+.+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence 44566667777777665 345566666677777665543 2223344555666666666 34332221
Q ss_pred CCCc-----ccc--CCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEc
Q 044133 188 PIPS-----TLG--HLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLIL 260 (384)
Q Consensus 188 ~~~~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 260 (384)
.... .+. ....|+.|++++|.++.+ +. +..+++|+.|++++|.+..+ |..+..+++|+.|++
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~~l---------p~~~~~l~~L~~L~L 493 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLRAL---------PPALAALRCLEVLQA 493 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCCCC---------CGGGGGCTTCCEEEC
T ss_pred hhhhhhhcccccccCccCceEEEecCCCCCCC-cC-ccccccCcEeecCccccccc---------chhhhcCCCCCEEEC
Confidence 0000 000 113588999999988864 33 88899999999999987754 356777899999999
Q ss_pred cCCcccCCCCchhcCCccccEEecCCCcCCCCC-chhhcCCCCCcEEeCCCCccccccCcc------ccCCCeEE
Q 044133 261 GNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKI-PYQLGAIPGIHTVDLSMNNLSGGIPVF------VRKVPHLD 328 (384)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~~~~~~~~~------~~~l~~l~ 328 (384)
++|.+++ .| .+..+++|+.|++++|.+.+.. |..+..+++|+.|++++|++++..+.. +++|+.|+
T Consensus 494 s~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 494 SDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 9999986 34 7888999999999999999776 889999999999999999998765532 56777765
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.63 E-value=4.9e-15 Score=119.96 Aligned_cols=128 Identities=27% Similarity=0.338 Sum_probs=77.7
Q ss_pred CEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCCh-hhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcC
Q 044133 8 VHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPS-TLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSR 86 (384)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 86 (384)
++++++++.++.. |..+. .+|++|++++|.+....+. .|.++++|++|++++|.+....+..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~~i-p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSC-CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcC-ccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 5666666666533 33222 2666666666666644443 366666666666666666655566666666666666666
Q ss_pred CcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCc
Q 044133 87 NEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRIN 138 (384)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 138 (384)
|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 6666555555666666666666666666555556666666666666666554
No 130
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.1e-15 Score=121.18 Aligned_cols=132 Identities=22% Similarity=0.244 Sum_probs=78.5
Q ss_pred CCCcEEeccCCccc-ccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEE
Q 044133 53 TQLTTLAIASNQIN-GSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLN 131 (384)
Q Consensus 53 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (384)
++|++|++++|.+. ...+..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 23344455666666666666666533 4556666666666666666554444455566666666
Q ss_pred ccCCcCcccCC-ccccCCcccceeecccccccCCCC---ccccCcCCCCeeeccccccc
Q 044133 132 MHSNRINGSIP-LEIGNLNFLQVLGLSDNKLEGPIP---STIASLVNLKSLSLHYNNLI 186 (384)
Q Consensus 132 l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 186 (384)
+++|.+.+... ..+..+++|++|++++|.+....+ ..+..+++|+.|++++|...
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666654322 455566666666666666654433 35566666666666666554
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=3.7e-16 Score=121.24 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=84.9
Q ss_pred CCCCCeeeccCCccc-ccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEE
Q 044133 28 LSKLKILNLSSNSLV-GNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRIL 106 (384)
Q Consensus 28 ~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 106 (384)
.++|++|++++|.+. +..+..+..+++|+.|++++|.+... ..+..+++|++|++++|.+....+..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 356777777777665 45555666677777777777766544 556667777777777777664455555556777777
Q ss_pred EcCCCccccc-CCcCCcCCCCCCEEEccCCcCcccCC---ccccCCcccceeecc
Q 044133 107 DLSQNKLVGP-IPSSVGPLTQLTTLNMHSNRINGSIP---LEIGNLNFLQVLGLS 157 (384)
Q Consensus 107 ~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 157 (384)
++++|.+++. .+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777776643 22556677777777777777775554 356677777777765
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=1.1e-14 Score=118.00 Aligned_cols=127 Identities=27% Similarity=0.321 Sum_probs=82.6
Q ss_pred CEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCC
Q 044133 8 VHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRN 87 (384)
Q Consensus 8 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 87 (384)
++++++++.++.. |..+ .++|++|++++|.++ ..+..|.++++|+.|++++|.+....+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4667777766633 3222 246777777777766 44466777777777777777776666666667777777777777
Q ss_pred cccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCc
Q 044133 88 EIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRIN 138 (384)
Q Consensus 88 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 138 (384)
.+....+..+..+++|++|++++|.++...+..|..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 766555556666677777777777666555555666666666666666654
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.60 E-value=1.3e-14 Score=115.97 Aligned_cols=133 Identities=24% Similarity=0.250 Sum_probs=98.2
Q ss_pred CCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCC
Q 044133 175 LKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSK 254 (384)
Q Consensus 175 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 254 (384)
.+.++++++.+... +.. ..++|+.|++++|.+....+..+..+++|++|++++|.+..++. ..+..+++
T Consensus 9 ~~~l~~~~~~l~~~-p~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~ 77 (177)
T 2o6r_A 9 GTEIRCNSKGLTSV-PTG--IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD--------GVFDKLTK 77 (177)
T ss_dssp TTEEECCSSCCSSC-CTT--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCT--------TTTTTCTT
T ss_pred CCEEEecCCCCccC-CCC--CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeCh--------hHccCCCc
Confidence 35566666655533 221 23577888888887776666667778888888888887765432 33456788
Q ss_pred CcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccC
Q 044133 255 LTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP 318 (384)
Q Consensus 255 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 318 (384)
|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..+
T Consensus 78 L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888888888887777777888899999999998886666667888999999999999888665
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.60 E-value=1.4e-14 Score=117.18 Aligned_cols=131 Identities=25% Similarity=0.317 Sum_probs=89.6
Q ss_pred CeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCC
Q 044133 176 KSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKL 255 (384)
Q Consensus 176 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L 255 (384)
+.++++++.++.. +..+ .++|++|++++|.++.+ +..+..+++|+.|++++|.++.+.. ..|..+++|
T Consensus 13 ~~l~~~~~~l~~i-p~~~--~~~l~~L~L~~n~i~~i-p~~~~~l~~L~~L~Ls~N~i~~i~~--------~~f~~l~~L 80 (193)
T 2wfh_A 13 TVVRCSNKGLKVL-PKGI--PRDVTELYLDGNQFTLV-PKELSNYKHLTLIDLSNNRISTLSN--------QSFSNMTQL 80 (193)
T ss_dssp TEEECTTSCCSSC-CSCC--CTTCCEEECCSSCCCSC-CGGGGGCTTCCEEECCSSCCCCCCT--------TTTTTCTTC
T ss_pred CEEEcCCCCCCcC-CCCC--CCCCCEEECCCCcCchh-HHHhhcccCCCEEECCCCcCCEeCH--------hHccCCCCC
Confidence 3455555555432 2222 24677777777776633 3566777777777777777665433 345557778
Q ss_pred cEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccC
Q 044133 256 TTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP 318 (384)
Q Consensus 256 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 318 (384)
++|++++|.+++..+..|..+++|++|++++|.+....+..|..+++|+.|++++|++.+...
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 888888888877777778888888888888888886666677788888888888888876543
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.6e-15 Score=117.61 Aligned_cols=127 Identities=20% Similarity=0.258 Sum_probs=79.6
Q ss_pred CCCcEEeccCCccc-ccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEE
Q 044133 53 TQLTTLAIASNQIN-GSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLN 131 (384)
Q Consensus 53 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (384)
++|+.|++++|.+. ...+..+..+++|++|++++|.+... ..+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56677777777665 34455556667777777777766643 5566667777777777766654455555566777777
Q ss_pred ccCCcCcccC-CccccCCcccceeecccccccCCCC---ccccCcCCCCeeecc
Q 044133 132 MHSNRINGSI-PLEIGNLNFLQVLGLSDNKLEGPIP---STIASLVNLKSLSLH 181 (384)
Q Consensus 132 l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 181 (384)
+++|.+++.. +..+..+++|++|++++|.+.+..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777666432 2456666677777777776664443 356666666666654
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=3.1e-14 Score=113.78 Aligned_cols=129 Identities=26% Similarity=0.271 Sum_probs=80.2
Q ss_pred CCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcC
Q 044133 7 LVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSR 86 (384)
Q Consensus 7 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 86 (384)
.+.++++++.++... ..+ .++|++|++++|.+.+..+..|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p-~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVP-TGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCC-TTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCC-CCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 356667776666432 221 25677777777766655555666667777777777766655555566666777777776
Q ss_pred CcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCc
Q 044133 87 NEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRIN 138 (384)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 138 (384)
|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 6666444445566666666666666666555545556666666666666654
No 137
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.56 E-value=7.5e-13 Score=119.17 Aligned_cols=134 Identities=13% Similarity=0.170 Sum_probs=90.3
Q ss_pred CccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCC
Q 044133 166 PSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPI 245 (384)
Q Consensus 166 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 245 (384)
...+..+.+++.+.+..+ +.......+..+..|+.+.+..+ ++.+...+|..+.+|+.+.+..+ +..++.
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~------- 279 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPY------- 279 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECT-------
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccc-------
Confidence 344555666777766543 33345566777778888887654 45566667777788888877643 333333
Q ss_pred CccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCC
Q 044133 246 PPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMN 311 (384)
Q Consensus 246 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 311 (384)
..|..|++|+.+.+.++.++.....+|.+|.+|+.+.+.++ +......+|.+|++|+.+.+..+
T Consensus 280 -~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 280 -LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp -TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred -cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 34556788888888877777677778888888888888654 44445677888888888777544
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=1.5e-15 Score=147.48 Aligned_cols=140 Identities=28% Similarity=0.338 Sum_probs=82.6
Q ss_pred cCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcC
Q 044133 44 NVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGP 123 (384)
Q Consensus 44 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 123 (384)
..++.|..++.|+.|++++|.+. .++..+..+++|++|++++|.+. .+|..+..+++|++|+|++|.++ ..+..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 33555666777777777777766 33444446677777777777766 55666667777777777777766 44666666
Q ss_pred CCCCCEEEccCCcCcccCCccccCCcccceeecccccccCCCCccccCcCC-CCeeecccccccC
Q 044133 124 LTQLTTLNMHSNRINGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVN-LKSLSLHYNNLIG 187 (384)
Q Consensus 124 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~ 187 (384)
+++|+.|++++|.+.. ++..+..+++|+.|++++|.+.+..+..+..... ...+++.+|.+..
T Consensus 292 l~~L~~L~L~~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp GTTCSEEECCSSCCCC-CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCEEECCCCCCCc-cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 7777777777776663 3444667777777777777766554444433211 1224455555543
No 139
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=3.3e-15 Score=145.08 Aligned_cols=154 Identities=24% Similarity=0.351 Sum_probs=114.3
Q ss_pred CCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCC
Q 044133 20 HIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGH 99 (384)
Q Consensus 20 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 99 (384)
..+..+..+++|+.|+|++|.+. .++..+.++++|++|+|++|.+. .+|..|.++++|++|++++|.+. .+|..+..
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34667888999999999999998 55555668999999999999998 66788899999999999999999 67888999
Q ss_pred CCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCCccccCCcc-cceeecccccccCCCCccccCcCCCCee
Q 044133 100 LKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIPLEIGNLNF-LQVLGLSDNKLEGPIPSTIASLVNLKSL 178 (384)
Q Consensus 100 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L 178 (384)
+++|++|+|++|.++ ..+..|..+++|+.|++++|.+++..+..+..... ...+++++|.+....+. .|+.|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFI 364 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------cccee
Confidence 999999999999997 55667999999999999999998766665544322 23467777777655443 34455
Q ss_pred ecccc
Q 044133 179 SLHYN 183 (384)
Q Consensus 179 ~l~~~ 183 (384)
++..|
T Consensus 365 ~l~~n 369 (727)
T 4b8c_D 365 EINTD 369 (727)
T ss_dssp -----
T ss_pred Eeecc
Confidence 55544
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.54 E-value=6.2e-15 Score=117.68 Aligned_cols=135 Identities=21% Similarity=0.164 Sum_probs=101.2
Q ss_pred hhhcCCCCCeeeccCCcccccCChhhhCC-CCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCC
Q 044133 24 TLGRLSKLKILNLSSNSLVGNVPSTLSHL-TQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKR 102 (384)
Q Consensus 24 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 102 (384)
.+.++++|++|++++|.+... +. +..+ ++|+.|++++|.+... ..+..+++|++|++++|.+....+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 356778888888888888743 33 4444 4888888888888755 56778888888888888887554444577888
Q ss_pred CCEEEcCCCcccccCC-cCCcCCCCCCEEEccCCcCcccCCc---cccCCcccceeeccccccc
Q 044133 103 LRILDLSQNKLVGPIP-SSVGPLTQLTTLNMHSNRINGSIPL---EIGNLNFLQVLGLSDNKLE 162 (384)
Q Consensus 103 L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~ 162 (384)
|++|++++|.+..... ..+..+++|+.|++++|.+...... .+..+++|+.|++++|...
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999998888864332 2677888899999999988754433 4778889999999888654
No 141
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.54 E-value=1.9e-12 Score=116.53 Aligned_cols=279 Identities=9% Similarity=0.056 Sum_probs=189.0
Q ss_pred CCCCCEEeccCCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEE
Q 044133 4 LRNLVHLDLSNNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLD 83 (384)
Q Consensus 4 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 83 (384)
..+|+.+.+... ++.+...+|.+|.+|+.+.+.. .++.+...+|.++ +|+.+.+..+ +..+...+|..+ +|+.++
T Consensus 45 ~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~ 119 (379)
T 4h09_A 45 RDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAS-TVTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFE 119 (379)
T ss_dssp GGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECT-TCCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEE
T ss_pred ccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCC-cceEechhhhcCC-CCceEECCce-eeEeccceeccC-Cccccc
Confidence 457888888764 6667778899999999999964 4666777888887 6888877654 444555667665 688888
Q ss_pred CcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCc---------------------------
Q 044133 84 LSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNR--------------------------- 136 (384)
Q Consensus 84 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~--------------------------- 136 (384)
+..+- ......++.++ +++.+.+..+ ++.+....+..+..++.+.+....
T Consensus 120 lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (379)
T 4h09_A 120 FPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG 196 (379)
T ss_dssp CCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred CCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence 86542 22333344433 4444444432 222333444444444444433211
Q ss_pred --------CcccCCccccCCcccceeecccccccCCCCccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCc
Q 044133 137 --------INGSIPLEIGNLNFLQVLGLSDNKLEGPIPSTIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENK 208 (384)
Q Consensus 137 --------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 208 (384)
........+....+++.+.+..+ +......++..+..|+.+.+..+ ++......|..+.+|+.+.+..+
T Consensus 197 ~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~- 273 (379)
T 4h09_A 197 TEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK- 273 (379)
T ss_dssp SEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-
T ss_pred cccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-
Confidence 11122334455667777777553 33355667888999999999764 55566778899999999999754
Q ss_pred ccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccccEEecCCCc
Q 044133 209 LVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNS 288 (384)
Q Consensus 209 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 288 (384)
+..+...+|.++.+|+.+.+.++.+..++. .+|.+|.+|+.+.+..+ ++.+...+|.+|++|+.+.+..+
T Consensus 274 i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~--------~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~- 343 (379)
T 4h09_A 274 VKTVPYLLCSGCSNLTKVVMDNSAIETLEP--------RVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS- 343 (379)
T ss_dssp CSEECTTTTTTCTTCCEEEECCTTCCEECT--------TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-
T ss_pred ceeccccccccccccccccccccccceehh--------hhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-
Confidence 555677889999999999999887777665 35566899999999765 66677889999999999999765
Q ss_pred CCCCCchhhcCCCCC
Q 044133 289 INGKIPYQLGAIPGI 303 (384)
Q Consensus 289 ~~~~~~~~l~~~~~L 303 (384)
+......+|.+++.+
T Consensus 344 v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 344 ITLIESGAFEGSSIT 358 (379)
T ss_dssp CCEECTTTTTTSSCC
T ss_pred cCEEchhHhhCCCCC
Confidence 554456677666433
No 142
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=3.2e-14 Score=113.56 Aligned_cols=136 Identities=18% Similarity=0.152 Sum_probs=99.1
Q ss_pred hhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCCcccccCCcCCcCCCCC
Q 044133 48 TLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQNKLVGPIPSSVGPLTQL 127 (384)
Q Consensus 48 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 127 (384)
.+.++++|+.|++++|.+... +......++|++|++++|.+... ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 356677888888888888743 33223334888888888888754 567788888888888888876655555778888
Q ss_pred CEEEccCCcCcccCC-ccccCCcccceeecccccccCCCCc---cccCcCCCCeeeccccccc
Q 044133 128 TTLNMHSNRINGSIP-LEIGNLNFLQVLGLSDNKLEGPIPS---TIASLVNLKSLSLHYNNLI 186 (384)
Q Consensus 128 ~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~ 186 (384)
+.|++++|.+..... ..+..+++|+.|++++|.+...... .+..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888888864432 2677788888888888887743222 3777888888888877654
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=1.9e-12 Score=102.36 Aligned_cols=108 Identities=23% Similarity=0.213 Sum_probs=67.5
Q ss_pred CEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccc
Q 044133 200 TDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKL 279 (384)
Q Consensus 200 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 279 (384)
+.++++++.++.+.. .+ .++++.|++++|.+..+. +..+..+++|++|++++|++++..+..|..+++|
T Consensus 12 ~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~--------~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 80 (170)
T 3g39_A 12 TTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLE--------PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80 (170)
T ss_dssp TEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCC--------TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccC--------hhhhcCcccCCEEECCCCCcCccChhhccCCCCC
Confidence 455555555553322 12 245666666666555442 2334456667777777777766666666777777
Q ss_pred cEEecCCCcCCCCCchhhcCCCCCcEEeCCCCccccccC
Q 044133 280 CYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGIP 318 (384)
Q Consensus 280 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 318 (384)
++|++++|++.+..+..|..+++|+.|++++|++++..+
T Consensus 81 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 81 TQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CEEECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 777777777776555667777777777777777776543
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=1.6e-15 Score=123.56 Aligned_cols=113 Identities=25% Similarity=0.235 Sum_probs=60.9
Q ss_pred cccCCCCCCEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCc
Q 044133 192 TLGHLNRLTDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPS 271 (384)
Q Consensus 192 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 271 (384)
.+..+++|++|++++|.++.+ + .+..+++|+.|++++|.+.+++ ..+..+++|++|++++|.+++. +
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l-~-~~~~l~~L~~L~l~~n~l~~l~---------~~~~~~~~L~~L~L~~N~l~~l-~- 109 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKKIE---------NLDAVADTLEELWISYNQIASL-S- 109 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCC-C-CHHHHTTCCEEEEEEEEECSCS---------SHHHHHHHCSEEEEEEEECCCH-H-
T ss_pred HHhcCCCCCEEECCCCCCccc-c-ccccCCCCCEEECCCCCccccc---------chhhcCCcCCEEECcCCcCCcC-C-
Confidence 344455555555555555432 2 4445555555555555544321 2233345666666666666542 2
Q ss_pred hhcCCccccEEecCCCcCCCCCc-hhhcCCCCCcEEeCCCCcccccc
Q 044133 272 QIGKLQKLCYLDLSGNSINGKIP-YQLGAIPGIHTVDLSMNNLSGGI 317 (384)
Q Consensus 272 ~~~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~ 317 (384)
.+..+++|++|++++|++.+..+ ..+..+++|+.|++++|++++.+
T Consensus 110 ~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~ 156 (198)
T 1ds9_A 110 GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDY 156 (198)
T ss_dssp HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHH
T ss_pred ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccc
Confidence 45556666666666666663222 35566666666666666665543
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.40 E-value=1.9e-15 Score=123.21 Aligned_cols=132 Identities=27% Similarity=0.318 Sum_probs=62.0
Q ss_pred hhcCCCCCeeeccCCcccccCCh------hhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCC
Q 044133 25 LGRLSKLKILNLSSNSLVGNVPS------TLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIG 98 (384)
Q Consensus 25 ~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 98 (384)
+.....++.++++.+.+.+..+. .+..+++|++|++++|.+.. .+ .+..+++|+.|++++|.+. ..+..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 33445555555555555544333 55555666666666655553 22 4455555555555555554 2333333
Q ss_pred CCCCCCEEEcCCCcccccCCcCCcCCCCCCEEEccCCcCcccCC-ccccCCcccceeecccccc
Q 044133 99 HLKRLRILDLSQNKLVGPIPSSVGPLTQLTTLNMHSNRINGSIP-LEIGNLNFLQVLGLSDNKL 161 (384)
Q Consensus 99 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~ 161 (384)
.+++|++|++++|.+++. + .+..+++|+.|++++|.+..... ..+..+++|++|++++|.+
T Consensus 91 ~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 91 VADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred cCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 344555555555544432 1 23334444444444444432211 2233444444444444443
No 146
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=2.9e-12 Score=101.32 Aligned_cols=105 Identities=26% Similarity=0.284 Sum_probs=65.4
Q ss_pred CCeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCC
Q 044133 31 LKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQ 110 (384)
Q Consensus 31 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (384)
.++++++++.++. ++..+ .++|+.|++++|.+....+..|..+++|++|++++|.+....+..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 3556666665553 22222 25566666666666655556666666666666666666654445556667777777777
Q ss_pred CcccccCCcCCcCCCCCCEEEccCCcCc
Q 044133 111 NKLVGPIPSSVGPLTQLTTLNMHSNRIN 138 (384)
Q Consensus 111 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 138 (384)
|.+++..+..+..+++|+.|++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 7766555556667777777777777665
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=4.9e-12 Score=100.35 Aligned_cols=104 Identities=24% Similarity=0.302 Sum_probs=69.2
Q ss_pred CeeeccCCcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCcccccCCcCCCCCCCCCEEEcCCC
Q 044133 32 KILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNEIGGSIPSTIGHLKRLRILDLSQN 111 (384)
Q Consensus 32 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (384)
+.++++++.++ .+|..+. ++|++|++++|.+....+..|.++++|++|++++|.+....+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 55666666665 3333332 56777777777776666666677777777777777776544445667777777777777
Q ss_pred cccccCCcCCcCCCCCCEEEccCCcCc
Q 044133 112 KLVGPIPSSVGPLTQLTTLNMHSNRIN 138 (384)
Q Consensus 112 ~~~~~~~~~l~~l~~L~~L~l~~~~~~ 138 (384)
.++...+..+..+++|+.|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 777655556777777777777777765
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=6.2e-12 Score=99.79 Aligned_cols=107 Identities=21% Similarity=0.202 Sum_probs=61.1
Q ss_pred CEEEccCCcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCCchhcCCccc
Q 044133 200 TDLDLSENKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIPSQIGKLQKL 279 (384)
Q Consensus 200 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 279 (384)
+.++++++.+..+.. .+ .++|+.|++++|.+..+. +..+..+++|++|++++|++++..+..|..+++|
T Consensus 15 ~~l~~~~n~l~~iP~-~~--~~~L~~L~Ls~N~l~~~~--------~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 15 TLVNCQNIRLASVPA-GI--PTDKQRLWLNNNQITKLE--------PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL 83 (174)
T ss_dssp SEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCCCC--------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cEEEeCCCCCCccCC-Cc--CCCCcEEEeCCCCccccC--------HHHhcCCcCCCEEECCCCCCCccChhHhCCcchh
Confidence 345555555443222 12 145555666665554432 2334445666666666666665555555666677
Q ss_pred cEEecCCCcCCCCCchhhcCCCCCcEEeCCCCcccccc
Q 044133 280 CYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGI 317 (384)
Q Consensus 280 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 317 (384)
++|++++|++.+..+..|..+++|+.|++++|++.+..
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 77777777666544555666777777777777766544
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.34 E-value=2.5e-14 Score=127.72 Aligned_cols=159 Identities=19% Similarity=0.184 Sum_probs=75.5
Q ss_pred CCCCeeeccCCcccccCChhhhC-----CCCCcEEeccCCcccccCCccc-CCCCCCCEEECcCCcccccCCcCC-----
Q 044133 29 SKLKILNLSSNSLVGNVPSTLSH-----LTQLTTLAIASNQINGSIPLEI-ENLKVLHVLDLSRNEIGGSIPSTI----- 97 (384)
Q Consensus 29 ~~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~----- 97 (384)
++|++|++++|.++......+.. .++|++|++++|.+.+.....+ ..+++|++|++++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45555555555554332222221 2455555555555532211111 123455555665555543222222
Q ss_pred CCCCCCCEEEcCCCccccc----CCcCCcCCCCCCEEEccCCcCcccC----CccccCCcccceeecccccccCCCC---
Q 044133 98 GHLKRLRILDLSQNKLVGP----IPSSVGPLTQLTTLNMHSNRINGSI----PLEIGNLNFLQVLGLSDNKLEGPIP--- 166 (384)
Q Consensus 98 ~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~--- 166 (384)
...++|++|++++|.++.. ....+..+++|++|++++|.+.+.. ...+...++|++|++++|.+++...
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2345566666666655432 1122344555666666666654321 2234445566666666666553222
Q ss_pred -ccccCcCCCCeeecccccccC
Q 044133 167 -STIASLVNLKSLSLHYNNLIG 187 (384)
Q Consensus 167 -~~~~~~~~L~~L~l~~~~~~~ 187 (384)
..+...++|++|++++|.+..
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHhCCCCCEEeccCCCCCH
Confidence 223344666666666666654
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=1.6e-14 Score=128.98 Aligned_cols=93 Identities=20% Similarity=0.178 Sum_probs=42.3
Q ss_pred CCCCCEEEccCCccccc----CCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCC-
Q 044133 196 LNRLTDLDLSENKLVGP----IPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIP- 270 (384)
Q Consensus 196 ~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~- 270 (384)
.++|++|++++|.+++. .+..+..+++|++|++++|.+.+.+...+. ..+..+++|++|++++|.+++...
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~----~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLA----AQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHH----HHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHH----HHHhcCCCcCeEECCCCCCCHHHHH
Confidence 34555555555554321 112223445555555555554432211111 223334555666666665554322
Q ss_pred ---chhcCCccccEEecCCCcCCCC
Q 044133 271 ---SQIGKLQKLCYLDLSGNSINGK 292 (384)
Q Consensus 271 ---~~~~~~~~L~~L~l~~n~~~~~ 292 (384)
.++..+++|++|++++|.+.+.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHH
Confidence 2223345566666666655543
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.15 E-value=1.1e-10 Score=103.67 Aligned_cols=103 Identities=23% Similarity=0.233 Sum_probs=57.5
Q ss_pred eeecccc-cccCCCCccccCCCCCCEEEccC-CcccccCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCC
Q 044133 177 SLSLHYN-NLIGPIPSTLGHLNRLTDLDLSE-NKLVGPIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSK 254 (384)
Q Consensus 177 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~ 254 (384)
.++++++ .++. .|. +..+++|++|+|++ |.+..+.+..|..+++|+.|+|++|.+..+. +..|..+++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~--------~~~~~~l~~ 81 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA--------PDAFHFTPR 81 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC--------TTGGGSCSC
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC--------HHHhcCCcC
Confidence 3455554 4543 344 56666666666664 6666555556666666666666666554432 233445566
Q ss_pred CcEEEccCCcccCCCCchhcCCccccEEecCCCcCC
Q 044133 255 LTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSIN 290 (384)
Q Consensus 255 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 290 (384)
|+.|+|++|++++..+..|..++ |+.|++.+|.+.
T Consensus 82 L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 82 LSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 66666666666554444444433 666666666555
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.10 E-value=3e-10 Score=100.84 Aligned_cols=103 Identities=24% Similarity=0.184 Sum_probs=70.2
Q ss_pred EEeccCC-cCccCCChhhhcCCCCCeeeccC-CcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcC
Q 044133 9 HLDLSNN-HLTGHIPPTLGRLSKLKILNLSS-NSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSR 86 (384)
Q Consensus 9 ~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 86 (384)
.++++++ .++. .|. +..+++|++|+|++ |.+.+..+..|.++++|+.|+|++|.+....+..|.++++|++|+|++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4567766 6764 444 77777777777775 777766666777777777777777777766666777777777777777
Q ss_pred CcccccCCcCCCCCCCCCEEEcCCCccc
Q 044133 87 NEIGGSIPSTIGHLKRLRILDLSQNKLV 114 (384)
Q Consensus 87 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 114 (384)
|.+....+..+..++ |+.|++.+|.+.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 777644444444444 777777777654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=1.7e-10 Score=102.18 Aligned_cols=161 Identities=16% Similarity=0.182 Sum_probs=93.5
Q ss_pred ccccCcCCCCeeecccccccCCCCccccCCCCCCEEEccCCcccccCCccC--CCCCCCCeeecCCC--CCCCCCCCccc
Q 044133 167 STIASLVNLKSLSLHYNNLIGPIPSTLGHLNRLTDLDLSENKLVGPIPSSV--GHLNFLQDLDLSNN--KLEDLSDNKLD 242 (384)
Q Consensus 167 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~n--~~~~~~~~~~~ 242 (384)
..+..+|+|+.|.++++.-... +. +. .++|+.|++..|.+.......+ ..+|+|+.|+|+.+ .... ...+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l~l-~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~--~~~~~ 240 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNLSI-GK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGF--DGDMN 240 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTCBC-CS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTC--CSCGG
T ss_pred HHHhcCCCCcEEEEeCCCCcee-cc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEecccccccc--chhHH
Confidence 3345567777777766531111 11 22 5677777777666543222222 25677777776431 1110 00010
Q ss_pred CCCCccc--cCCCCCcEEEccCCcccCCCCchh---cCCccccEEecCCCcCCCCC----chhhcCCCCCcEEeCCCCcc
Q 044133 243 GPIPPEL--MNCSKLTTLILGNNLLSGSIPSQI---GKLQKLCYLDLSGNSINGKI----PYQLGAIPGIHTVDLSMNNL 313 (384)
Q Consensus 243 ~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~~ 313 (384)
+ +...+ ..+|+|+.|++.+|.+++.....+ ..++.|++|+++.|.+.+.. +..+..+++|+.|++++|.+
T Consensus 241 ~-l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 241 V-FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp G-TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred H-HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 0 00111 247899999999888875433333 35788999999999887643 33345578999999999988
Q ss_pred ccccCccccC-C-CeEEcccCc
Q 044133 314 SGGIPVFVRK-V-PHLDVSGNK 333 (384)
Q Consensus 314 ~~~~~~~~~~-l-~~l~l~~~~ 333 (384)
++.....+.. + ..+++++++
T Consensus 320 ~d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 320 SDEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp CHHHHHHHHHHCCSEEECCSBC
T ss_pred CHHHHHHHHHHcCCEEEecCCc
Confidence 8654444443 2 456666655
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.98 E-value=2.6e-10 Score=100.91 Aligned_cols=84 Identities=15% Similarity=0.254 Sum_probs=46.2
Q ss_pred CCcccceeecccccccCCCCccc---cCcCCCCeeecccccccCCCC----ccccCCCCCCEEEccCCcccccCCccCCC
Q 044133 147 NLNFLQVLGLSDNKLEGPIPSTI---ASLVNLKSLSLHYNNLIGPIP----STLGHLNRLTDLDLSENKLVGPIPSSVGH 219 (384)
Q Consensus 147 ~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 219 (384)
.+|+|+.|++.+|.+.+.....+ ..+++|+.|+++.|.+..... ..+..+++|+.|++++|.+++.....+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 35667777776666543222222 245677777777776654322 12234577788888777765443332322
Q ss_pred -CCCCCeeecCCCC
Q 044133 220 -LNFLQDLDLSNNK 232 (384)
Q Consensus 220 -l~~L~~L~l~~n~ 232 (384)
+ ..++++++++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 1 2456777665
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.70 E-value=1.3e-09 Score=87.11 Aligned_cols=118 Identities=14% Similarity=0.183 Sum_probs=61.5
Q ss_pred ccCCCCCCEEEccCC-ccccc----CCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccC
Q 044133 193 LGHLNRLTDLDLSEN-KLVGP----IPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSG 267 (384)
Q Consensus 193 ~~~~~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 267 (384)
+...+.|++|++++| .+.+. ....+...++|++|++++|.+.+.+...+. ..+...+.|++|+|++|.+++
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~----~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA----EMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH----HHHHHCSSCCEEECCSSCCCH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH----HHHHhCCCcCEEECcCCcCCH
Confidence 334455555555555 44321 122333445566666666655443221111 233345566667776666664
Q ss_pred CC----CchhcCCccccEEec--CCCcCCCC----CchhhcCCCCCcEEeCCCCccc
Q 044133 268 SI----PSQIGKLQKLCYLDL--SGNSINGK----IPYQLGAIPGIHTVDLSMNNLS 314 (384)
Q Consensus 268 ~~----~~~~~~~~~L~~L~l--~~n~~~~~----~~~~l~~~~~L~~L~l~~n~~~ 314 (384)
.. ..++...++|++|++ ++|.+.+. +...+...+.|++|++++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 32 334455566777777 66666643 2334455667777777777654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.56 E-value=7e-09 Score=82.90 Aligned_cols=116 Identities=17% Similarity=0.180 Sum_probs=83.0
Q ss_pred hhhhcCCCCCeeeccCC-ccccc----CChhhhCCCCCcEEeccCCcccccC----CcccCCCCCCCEEECcCCccccc-
Q 044133 23 PTLGRLSKLKILNLSSN-SLVGN----VPSTLSHLTQLTTLAIASNQINGSI----PLEIENLKVLHVLDLSRNEIGGS- 92 (384)
Q Consensus 23 ~~~~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~- 92 (384)
..+..+++|++|++++| .+... ...++...+.|++|++++|.+.+.. ...+...++|++|++++|.+++.
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34566788999999888 77643 3345566788999999998876432 23345567899999999888743
Q ss_pred ---CCcCCCCCCCCCEEEc--CCCccccc----CCcCCcCCCCCCEEEccCCcCc
Q 044133 93 ---IPSTIGHLKRLRILDL--SQNKLVGP----IPSSVGPLTQLTTLNMHSNRIN 138 (384)
Q Consensus 93 ---~~~~~~~l~~L~~L~l--~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~ 138 (384)
....+...++|++|++ ++|.+... ....+...+.|+.|++++|.+.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2445666788999999 77887643 2334556688999999988875
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.47 E-value=2e-08 Score=78.20 Aligned_cols=85 Identities=12% Similarity=0.170 Sum_probs=64.4
Q ss_pred CCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCc-ccccCCcccCCC----CCCCEEECcCCc-ccccCCcCCCCCC
Q 044133 28 LSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQ-INGSIPLEIENL----KVLHVLDLSRNE-IGGSIPSTIGHLK 101 (384)
Q Consensus 28 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~----~~L~~L~l~~~~-~~~~~~~~~~~l~ 101 (384)
-.+|++|++++|.++......+.+|++|++|++++|. +++..-..++.+ ++|++|++++|. +++.....+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3468999999998887766778889999999999985 544322334443 479999999985 7765556677889
Q ss_pred CCCEEEcCCCc
Q 044133 102 RLRILDLSQNK 112 (384)
Q Consensus 102 ~L~~L~l~~~~ 112 (384)
+|++|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 99999999886
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.38 E-value=3.9e-08 Score=76.58 Aligned_cols=86 Identities=10% Similarity=0.066 Sum_probs=67.4
Q ss_pred CCCCcEEeccCCcccccCCcccCCCCCCCEEECcCCc-ccccCCcCCCCC----CCCCEEEcCCCc-ccccCCcCCcCCC
Q 044133 52 LTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRNE-IGGSIPSTIGHL----KRLRILDLSQNK-LVGPIPSSVGPLT 125 (384)
Q Consensus 52 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~l~~l~ 125 (384)
-..|+.|++++|.+++.....+..+++|++|++++|. +++.....+..+ ++|++|++++|. ++......+..++
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 3579999999999876655667899999999999995 665544455553 579999999986 7765555677889
Q ss_pred CCCEEEccCCcC
Q 044133 126 QLTTLNMHSNRI 137 (384)
Q Consensus 126 ~L~~L~l~~~~~ 137 (384)
+|+.|+++++.-
T Consensus 140 ~L~~L~L~~c~~ 151 (176)
T 3e4g_A 140 NLKYLFLSDLPG 151 (176)
T ss_dssp TCCEEEEESCTT
T ss_pred CCCEEECCCCCC
Confidence 999999998863
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.17 E-value=2.2e-06 Score=71.90 Aligned_cols=64 Identities=27% Similarity=0.301 Sum_probs=31.1
Q ss_pred CCCCcEEEccCCcccCC--CCchhcCCccccEEecCCCcCCCC-CchhhcCCCCCcEEeCCCCccccc
Q 044133 252 CSKLTTLILGNNLLSGS--IPSQIGKLQKLCYLDLSGNSINGK-IPYQLGAIPGIHTVDLSMNNLSGG 316 (384)
Q Consensus 252 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~ 316 (384)
+++|+.|+|++|.+++. .+..+..+++|+.|+|++|++.+. ....+..+ +|++|++++|++++.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~ 235 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDT 235 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccc
Confidence 44555555555555442 123344555555555555555533 11122222 566666666666543
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.14 E-value=2.3e-06 Score=71.81 Aligned_cols=82 Identities=24% Similarity=0.268 Sum_probs=60.7
Q ss_pred hcCCCCCeeeccCCccccc--CChhhhCCCCCcEEeccCCccccc-CCcccCCCCCCCEEECcCCcccccCC-------c
Q 044133 26 GRLSKLKILNLSSNSLVGN--VPSTLSHLTQLTTLAIASNQINGS-IPLEIENLKVLHVLDLSRNEIGGSIP-------S 95 (384)
Q Consensus 26 ~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~-------~ 95 (384)
.++++|++|+|++|.+.+. .+..+..+++|+.|+|++|.+.+. ....+..+ +|++|++++|.+....+ .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 5688999999999998863 346677899999999999998754 11233344 89999999998875433 2
Q ss_pred CCCCCCCCCEEEc
Q 044133 96 TIGHLKRLRILDL 108 (384)
Q Consensus 96 ~~~~l~~L~~L~l 108 (384)
.+..+++|+.|+=
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3566788888863
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.82 E-value=3.6e-06 Score=66.80 Aligned_cols=114 Identities=11% Similarity=0.184 Sum_probs=57.5
Q ss_pred CCCCCCEEEccCC-cccc----cCCccCCCCCCCCeeecCCCCCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCC
Q 044133 195 HLNRLTDLDLSEN-KLVG----PIPSSVGHLNFLQDLDLSNNKLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSI 269 (384)
Q Consensus 195 ~~~~L~~L~l~~~-~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 269 (384)
.-+.|++|+++++ .+.+ .....+..-..|+.|+|++|.+.+.+...+. +.+...+.|+.|+|++|.|++..
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA----~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLI----ELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHH----HHHHHCSSCCEEECCSSBCCHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHH----HHHhcCCccCeEecCCCcCCHHH
Confidence 3445555555543 3322 1223334445566666666665554332222 34445566666777666666433
Q ss_pred C----chhcCCccccEEecCCCc---CCCC----CchhhcCCCCCcEEeCCCCc
Q 044133 270 P----SQIGKLQKLCYLDLSGNS---INGK----IPYQLGAIPGIHTVDLSMNN 312 (384)
Q Consensus 270 ~----~~~~~~~~L~~L~l~~n~---~~~~----~~~~l~~~~~L~~L~l~~n~ 312 (384)
. +++...+.|++|+|++|. +.+. +...+...+.|+.|+++.|.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 2 233445566666666542 2221 23345556666666665554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.65 E-value=1.1e-05 Score=64.06 Aligned_cols=114 Identities=13% Similarity=0.104 Sum_probs=79.4
Q ss_pred cCCCCCCCCeeecCCC-CCCCCCCCcccCCCCccccCCCCCcEEEccCCcccCCCC----chhcCCccccEEecCCCcCC
Q 044133 216 SVGHLNFLQDLDLSNN-KLEDLSDNKLDGPIPPELMNCSKLTTLILGNNLLSGSIP----SQIGKLQKLCYLDLSGNSIN 290 (384)
Q Consensus 216 ~~~~l~~L~~L~l~~n-~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~n~~~ 290 (384)
.+..-+.|++|+++++ .+.+.+...+. +.+...+.|+.|+|++|.+.+... .++...+.|++|+|++|.|.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la----~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLI----EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHH----HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHH----HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 3445678999999985 77654332222 456667899999999999986543 34456789999999999998
Q ss_pred CC----CchhhcCCCCCcEEeCCCC---cccccc----Cccc---cCCCeEEcccCc
Q 044133 291 GK----IPYQLGAIPGIHTVDLSMN---NLSGGI----PVFV---RKVPHLDVSGNK 333 (384)
Q Consensus 291 ~~----~~~~l~~~~~L~~L~l~~n---~~~~~~----~~~~---~~l~~l~l~~~~ 333 (384)
+. +.+++...+.|++|++++| .+.... ...+ +.+..++++.+.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 65 3345677888999999876 334322 2222 467777776443
No 163
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=97.34 E-value=0.00036 Score=39.38 Aligned_cols=30 Identities=17% Similarity=0.285 Sum_probs=15.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhheeccc
Q 044133 353 IATRLVAIILAMVAFLALIFGILIIRRRRD 382 (384)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (384)
....+++++++++++++++.++++|.|||+
T Consensus 10 ~~~~Ia~~vVGvll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 10 PLTSIISAVVGILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccchHHHHHHHHHHHHHHHHHHhheehhh
Confidence 334456666665555555555555555443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.29 E-value=0.00058 Score=50.50 Aligned_cols=59 Identities=25% Similarity=0.325 Sum_probs=39.2
Q ss_pred EEEccCCccc-CCCCchhcCCccccEEecCCCcCCCCCchhhcCCCCCcEEeCCCCcccccc
Q 044133 257 TLILGNNLLS-GSIPSQIGKLQKLCYLDLSGNSINGKIPYQLGAIPGIHTVDLSMNNLSGGI 317 (384)
Q Consensus 257 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 317 (384)
.++.+++.++ ...|..+. +++++|+|++|+++...+..|..+++|+.|++++|++.+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 5666666665 12333232 46777888888877666666777788888888888877644
No 165
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=97.01 E-value=0.00066 Score=38.54 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHhhheeccc
Q 044133 359 AIILAMVAFLALIFGILIIRRRRD 382 (384)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~ 382 (384)
+++.++++++++++++++|.|||+
T Consensus 16 gVVgGv~~~~ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 16 GMVGALLLLLVVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ehhHHHHHHHHHHHHHHHHhhhhH
Confidence 333334444445555555555443
No 166
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=96.91 E-value=0.0015 Score=36.98 Aligned_cols=28 Identities=11% Similarity=0.254 Sum_probs=14.0
Q ss_pred hHHHHHHHH-HHHHHHHHHHHhhheeccc
Q 044133 355 TRLVAIILA-MVAFLALIFGILIIRRRRD 382 (384)
Q Consensus 355 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 382 (384)
..+++.+++ ++++++++.++++|.|||+
T Consensus 10 ~aIA~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 10 PLIAAGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ceEEEeehHHHHHHHHHHHHHHHHhhhhh
Confidence 344445554 5555555555555555444
No 167
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=96.58 E-value=0.0039 Score=34.22 Aligned_cols=29 Identities=38% Similarity=0.669 Sum_probs=17.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhheecc
Q 044133 353 IATRLVAIILAMVAFLALIFGILIIRRRR 381 (384)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (384)
....+.++++++++.+++++++.++++||
T Consensus 9 s~GaIAGiVvG~v~gv~li~~l~~~~~rr 37 (38)
T 2k1k_A 9 TGGEIVAVIFGLLLGAALLLGILVFRSRR 37 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCceeeeehHHHHHHHHHHHHHHHHeec
Confidence 45567777877776665555544444433
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.37 E-value=0.0091 Score=43.96 Aligned_cols=39 Identities=26% Similarity=0.259 Sum_probs=30.6
Q ss_pred CCCcEEEccCCcccCCCCchhcCCccccEEecCCCcCCC
Q 044133 253 SKLTTLILGNNLLSGSIPSQIGKLQKLCYLDLSGNSING 291 (384)
Q Consensus 253 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 291 (384)
++|+.|+|++|.++......|..+++|+.|+|.+|.+..
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 467888888888887777777888888888888887763
No 169
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=95.47 E-value=0.017 Score=32.53 Aligned_cols=27 Identities=26% Similarity=0.310 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheecc
Q 044133 355 TRLVAIILAMVAFLALIFGILIIRRRR 381 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (384)
.+..+++.++++++++++++++++|||
T Consensus 14 ~I~~~vv~Gv~ll~~iv~~~~~~~rRr 40 (41)
T 2k9y_A 14 AVIGGVAVGVVLLLVLAGVGFFIHRRR 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred EEEeehhHHHHHHHHHHHHheeEeeec
Confidence 334444444444332444444444443
No 170
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=95.29 E-value=0.0051 Score=32.69 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheeccc
Q 044133 355 TRLVAIILAMVAFLALIFGILIIRRRRD 382 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (384)
..+++.++++++++++..++.+|.|||+
T Consensus 8 ~sIaagVvglll~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 8 TFIIATVVGVLLFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTHHHHHCC
T ss_pred cEeHHHHHHHHHHHHHHHHhheEEeecC
Confidence 4456666666666666666666666654
No 171
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=94.93 E-value=0.072 Score=30.18 Aligned_cols=37 Identities=24% Similarity=0.199 Sum_probs=30.4
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHhhheecccCC
Q 044133 348 PHHKTIATRLVAIILAMVAFLALIFGILIIRRRRDKE 384 (384)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (384)
+........+++.++++++++++++.++-.+++++||
T Consensus 8 s~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~kR 44 (44)
T 2ks1_B 8 PKIPSIATGMVGALLLLLVVALGIGLFMRRRHIVRKR 44 (44)
T ss_dssp SCSSSSTHHHHHHHHHHHHHHHHHHHHHHTTTCCSCC
T ss_pred CCcceEEeehhHHHHHHHHHHHHHHHHhhhhHhhccC
Confidence 4556677888888888888889999999999888775
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=94.46 E-value=0.1 Score=36.10 Aligned_cols=50 Identities=10% Similarity=0.110 Sum_probs=34.2
Q ss_pred CCcCccCCChhhhcCCCCCeeeccCCcccccCChhhhCCCCCcEEeccCCc
Q 044133 14 NNHLTGHIPPTLGRLSKLKILNLSSNSLVGNVPSTLSHLTQLTTLAIASNQ 64 (384)
Q Consensus 14 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 64 (384)
+..++.+...+|.+|.+|+.+.+-. .++.+...+|.+|.+|+.+.+.+..
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~~~~ 54 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILTGED 54 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEECCSC
T ss_pred CCccCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEcCCC
Confidence 3455666667777788888777754 4555666777777777777776643
No 173
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=92.89 E-value=0.25 Score=27.92 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=30.2
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHHHHhhheecccCC
Q 044133 347 PPHHKTIATRLVAIILAMVAFLALIFGILIIRRRRDKE 384 (384)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (384)
.+........+++.++++++++.+++.++-.+|+++||
T Consensus 6 ~s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~kr 43 (44)
T 2l2t_A 6 HARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKKKR 43 (44)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCC
T ss_pred CCCcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 34456677888888888888889999999988887775
No 174
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=91.73 E-value=0.25 Score=26.00 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhheec
Q 044133 354 ATRLVAIILAMVAFLALIFGILIIRRR 380 (384)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (384)
...+.+++++.+++.++++..+||++|
T Consensus 6 ~gaIaGIVvgdi~~t~~i~~~vy~~~r 32 (33)
T 2l34_A 6 PGVLAGIVVGDLVLTVLIALAVYFLGR 32 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cceEEeEeHHHHHHHHHHHHHHhheec
Confidence 356778888877777766666666554
No 175
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=91.29 E-value=0.61 Score=32.17 Aligned_cols=48 Identities=19% Similarity=0.139 Sum_probs=32.0
Q ss_pred CcccccCChhhhCCCCCcEEeccCCcccccCCcccCCCCCCCEEECcCC
Q 044133 39 NSLVGNVPSTLSHLTQLTTLAIASNQINGSIPLEIENLKVLHVLDLSRN 87 (384)
Q Consensus 39 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 87 (384)
..++.+...+|.+|..|+.+.|..+ ++.+...+|.+|.+|+.+.+...
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455566667777777777777764 34455667777777777777653
No 176
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=89.28 E-value=0.9 Score=25.59 Aligned_cols=36 Identities=17% Similarity=0.216 Sum_probs=23.0
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHhhheecccCC
Q 044133 348 PHHKTIATRLVAIILAMVAFLALIFGILIIRRRRDKE 384 (384)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (384)
+........+++ ++.++++..+++.++--++.++||
T Consensus 9 ~~~~~Ia~~vVG-vll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 9 SPLTSIISAVVG-ILLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp CSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHCSCCCC
T ss_pred CcccchHHHHHH-HHHHHHHHHHHHhheehhhhhccC
Confidence 444566677777 556666666666677666665554
No 177
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=86.05 E-value=0.85 Score=23.68 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhhheecc
Q 044133 360 IILAMVAFLALIFGILIIRRRR 381 (384)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~ 381 (384)
++++.+++..++.+-+.|+|.|
T Consensus 12 ~i~gl~vif~~lg~tflywrgr 33 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFLYWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCceeEEEccc
Confidence 3344444444444455555544
No 178
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=83.59 E-value=1.8 Score=25.60 Aligned_cols=22 Identities=18% Similarity=0.107 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 044133 355 TRLVAIILAMVAFLALIFGILI 376 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~ 376 (384)
+++++.+++.++++++++.+.|
T Consensus 10 WiIi~svl~GLLLL~Lii~~Lw 31 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALW 31 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 179
>1zza_A Stannin, AG8_1; helix, membrane protein; NMR {Homo sapiens}
Probab=78.02 E-value=2.5 Score=26.25 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhee
Q 044133 356 RLVAIILAMVAFLALIFGILIIRR 379 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~ 379 (384)
+++.+++++.++-+++.+.|+|.|
T Consensus 16 tv~viliavaalg~li~gcwcylr 39 (90)
T 1zza_A 16 TVIVILIAIAALGALILGCWCYLR 39 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred EehhHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555566677777666
No 180
>2l6w_A Beta-type platelet-derived growth factor receptor; transmembrane helix, receptor tyrosine kinase, heptad repeat membrane protein; NMR {Homo sapiens}
Probab=76.92 E-value=0.6 Score=25.19 Aligned_cols=23 Identities=13% Similarity=0.293 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHhhheec
Q 044133 358 VAIILAMVAFLALIFGILIIRRR 380 (384)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~ 380 (384)
+++++.++++++.+++.++.|++
T Consensus 12 ~avlal~vi~iisLIiLi~~w~q 34 (39)
T 2l6w_A 12 SAILALVVLTIISLIILIMLWQK 34 (39)
Confidence 33333333333333333333333
No 181
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=73.51 E-value=4.1 Score=21.78 Aligned_cols=8 Identities=25% Similarity=0.244 Sum_probs=3.4
Q ss_pred heecccCC
Q 044133 377 IRRRRDKE 384 (384)
Q Consensus 377 ~~~~~~~~ 384 (384)
|++-+|||
T Consensus 29 Yrk~~kQ~ 36 (36)
T 1pi7_A 29 GRGGKKKK 36 (36)
T ss_pred HHHHHhcC
Confidence 44434443
No 182
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=73.10 E-value=5.6 Score=24.37 Aligned_cols=6 Identities=0% Similarity=0.085 Sum_probs=2.3
Q ss_pred HHHHHH
Q 044133 357 LVAIIL 362 (384)
Q Consensus 357 ~~~~~~ 362 (384)
++|.++
T Consensus 13 vlGg~~ 18 (70)
T 2klu_A 13 VLGGVA 18 (70)
T ss_dssp HHHHHH
T ss_pred HHhHHH
Confidence 333333
No 183
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=73.05 E-value=7 Score=21.21 Aligned_cols=29 Identities=17% Similarity=0.135 Sum_probs=16.4
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHhhhee
Q 044133 350 HKTIATRLVAIILAMVAFLALIFGILIIRR 379 (384)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (384)
......+++++++++++ +++++.++|.+|
T Consensus 10 ~GaIAGiVvG~v~gv~l-i~~l~~~~~rrr 38 (38)
T 2k1k_A 10 GGEIVAVIFGLLLGAAL-LLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHCCC
T ss_pred CCceeeeehHHHHHHHH-HHHHHHHHeecC
Confidence 44555566666555554 445555667664
No 184
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=71.96 E-value=6.6 Score=20.30 Aligned_cols=12 Identities=17% Similarity=0.221 Sum_probs=4.4
Q ss_pred HHHHHHhhheec
Q 044133 369 ALIFGILIIRRR 380 (384)
Q Consensus 369 ~~~~~~~~~~~~ 380 (384)
++.+..++|..|
T Consensus 19 ~LgV~LI~f~~k 30 (35)
T 2lk9_A 19 ILGVPLIIFTIK 30 (35)
T ss_dssp HHHHHHHHHC--
T ss_pred HhcchheEEeee
Confidence 344444444443
No 185
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=71.66 E-value=6.9 Score=18.77 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHhh
Q 044133 364 MVAFLALIFGILI 376 (384)
Q Consensus 364 ~~~~~~~~~~~~~ 376 (384)
++++++++..+.|
T Consensus 12 viav~aaVllylW 24 (26)
T 3j1r_A 12 LIAVAAAVLLYTW 24 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333344443333
No 186
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=69.72 E-value=5.4 Score=21.48 Aligned_cols=7 Identities=43% Similarity=0.178 Sum_probs=2.7
Q ss_pred Hhhheec
Q 044133 374 ILIIRRR 380 (384)
Q Consensus 374 ~~~~~~~ 380 (384)
+.|+.||
T Consensus 30 I~y~I~r 36 (40)
T 1afo_A 30 ISYGIRR 36 (40)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333343
No 187
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=72.02 E-value=0.99 Score=24.99 Aligned_cols=25 Identities=12% Similarity=0.367 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheec
Q 044133 356 RLVAIILAMVAFLALIFGILIIRRR 380 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (384)
.+++..++.+++.++++.-.+..||
T Consensus 18 a~iGL~v~gVai~~vIVvsl~mlRr 42 (43)
T 2llm_A 18 AIIGLMVGGVVIATVIVITLVMLKK 42 (43)
Confidence 3444444444444333333333333
No 188
>1q90_G Cytochrome B6F complex subunit PETG; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.26.1
Probab=65.42 E-value=8.6 Score=20.36 Aligned_cols=21 Identities=19% Similarity=0.168 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 044133 356 RLVAIILAMVAFLALIFGILI 376 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~ 376 (384)
.+.++|++++-+..+...+..
T Consensus 5 lL~GIVlGlipvtlaGLfv~A 25 (37)
T 1q90_G 5 LLCGIVLGLVPVTIAGLFVTA 25 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhhHHHHHHHHHHHH
Confidence 345555555544444433333
No 189
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=59.92 E-value=16 Score=23.65 Aligned_cols=9 Identities=22% Similarity=0.316 Sum_probs=3.5
Q ss_pred hHHHHHHHH
Q 044133 355 TRLVAIILA 363 (384)
Q Consensus 355 ~~~~~~~~~ 363 (384)
.++.+++++
T Consensus 12 ~Iv~gvi~g 20 (79)
T 2knc_B 12 VVLLSVMGA 20 (79)
T ss_dssp HHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 333343333
No 190
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=57.86 E-value=22 Score=19.73 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 044133 355 TRLVAIILAMVAFLALIFGILI 376 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~ 376 (384)
+.+++.+++.++++++++.+.|
T Consensus 11 wiIi~s~l~GLllL~li~~~Lw 32 (42)
T 2k1a_A 11 WWVLVGVLGGLLLLTILVLAMW 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 191
>3arc_X Photosystem II PSBX protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3prq_X* 3prr_X* 3kzi_X* 3a0b_X* 3a0h_X*
Probab=56.70 E-value=14 Score=20.03 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh
Q 044133 356 RLVAIILAMVAFLALIFGILII 377 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~ 377 (384)
.+..++.+.++++++.+++++.
T Consensus 9 Fl~Sl~aG~vvvv~i~~ali~V 30 (39)
T 3arc_X 9 FFIGLLSGAVVLGLTFAVLIAI 30 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHheeE
Confidence 4444555555444444444443
No 192
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=55.60 E-value=30 Score=20.46 Aligned_cols=22 Identities=9% Similarity=0.107 Sum_probs=9.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh
Q 044133 355 TRLVAIILAMVAFLALIFGILI 376 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~ 376 (384)
+++++.+++.++++++++.+.|
T Consensus 13 wiIi~svl~GLllL~li~~~Lw 34 (54)
T 2knc_A 13 WWVLVGVLGGLLLLTILVLAMW 34 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444
No 193
>1spf_A Pulmonary surfactant-associated polypeptide C; lipoprotein(surface FILM); NMR {Sus scrofa} SCOP: j.35.1.1
Probab=55.02 E-value=20 Score=18.29 Aligned_cols=10 Identities=30% Similarity=0.531 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 044133 365 VAFLALIFGI 374 (384)
Q Consensus 365 ~~~~~~~~~~ 374 (384)
+.++++++++
T Consensus 21 VlvVvVivGa 30 (35)
T 1spf_A 21 VLVVVVIVGA 30 (35)
T ss_dssp HHHHHHHHHH
T ss_pred hhhHHHHHHH
Confidence 3333333333
No 194
>3bz1_X Photosystem II PSBX protein; electron transport photosystem, membrane complex, transmembrane alpha-helix; HET: CLA PHO HEM PL9 BCR DGD LHG SQD LMG LMT; 2.90A {Thermosynechococcus elongatus} PDB: 1s5l_X* 3bz2_X*
Probab=53.11 E-value=19 Score=20.69 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=12.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhe
Q 044133 355 TRLVAIILAMVAFLALIFGILIIR 378 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~ 378 (384)
-.+..++.+.++++++.+++++..
T Consensus 18 NFl~SlvaG~vVvv~i~~aLi~VS 41 (50)
T 3bz1_X 18 GFFIGLLSGAVVLGLTFAVLIAIS 41 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHheeee
Confidence 345555555555555444444443
No 195
>1vf5_G Protein PET G; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.26.1 PDB: 2d2c_G* 2e74_G* 2e75_G* 2e76_G* 2zt9_G*
Probab=51.36 E-value=7 Score=20.69 Aligned_cols=15 Identities=20% Similarity=0.051 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHHH
Q 044133 357 LVAIILAMVAFLALI 371 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~ 371 (384)
+.++|.+++-+..+.
T Consensus 6 L~GIVlGlipvtl~G 20 (37)
T 1vf5_G 6 LDGLVLGLVFATLGG 20 (37)
T ss_dssp ---CHHHHHHHHHHH
T ss_pred hhhHHHhhHHHHHHH
Confidence 344444444444333
No 196
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=49.17 E-value=5.2 Score=34.72 Aligned_cols=7 Identities=0% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHhhhe
Q 044133 372 FGILIIR 378 (384)
Q Consensus 372 ~~~~~~~ 378 (384)
+++++|+
T Consensus 303 ~~~~~~~ 309 (348)
T 1s7q_A 303 VAFVMKM 309 (348)
T ss_dssp -------
T ss_pred EEEEEEE
Confidence 3344444
No 197
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=53.67 E-value=3.8 Score=28.31 Aligned_cols=23 Identities=13% Similarity=0.368 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhee
Q 044133 357 LVAIILAMVAFLALIFGILIIRR 379 (384)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~ 379 (384)
+++..++.+++.+++++.+.+.|
T Consensus 32 ~igL~v~~vai~~viVv~l~v~r 54 (122)
T 2lp1_A 32 IIGLMVGGVVIATVIVITLVMLK 54 (122)
Confidence 44444444443333333333333
No 198
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=45.94 E-value=21 Score=19.45 Aligned_cols=20 Identities=20% Similarity=0.152 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 044133 356 RLVAIILAMVAFLALIFGIL 375 (384)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~ 375 (384)
.+.+-++++++++++...++
T Consensus 21 si~~~IVGaLvil~VAGLiy 40 (46)
T 1pfi_A 21 AIGGYIVGALVILAVAGLIY 40 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444555554444443333
No 199
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=42.56 E-value=16 Score=23.66 Aligned_cols=12 Identities=8% Similarity=0.553 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHH
Q 044133 357 LVAIILAMVAFL 368 (384)
Q Consensus 357 ~~~~~~~~~~~~ 368 (384)
+.+++.++++.+
T Consensus 10 ~~~Iv~gvi~gi 21 (79)
T 2knc_B 10 ILVVLLSVMGAI 21 (79)
T ss_dssp SHHHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 444444444433
No 200
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=41.99 E-value=5.4 Score=34.04 Aligned_cols=7 Identities=57% Similarity=0.743 Sum_probs=0.0
Q ss_pred Hhhheec
Q 044133 374 ILIIRRR 380 (384)
Q Consensus 374 ~~~~~~~ 380 (384)
++|++||
T Consensus 302 ~~~~~~~ 308 (315)
T 1cd1_A 302 YYIWRRR 308 (315)
T ss_dssp -------
T ss_pred Hhheehh
Confidence 3344333
No 201
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction, adhesion, structural protein; HET: NAG NDG; 30.00A {Mus musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Probab=41.74 E-value=8 Score=38.31 Aligned_cols=26 Identities=23% Similarity=0.453 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheec
Q 044133 355 TRLVAIILAMVAFLALIFGILIIRRR 380 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (384)
..++++++++++++++++.+++++||
T Consensus 705 ~aii~il~~~~~ll~~~ll~~~~~~~ 730 (880)
T 1q55_A 705 PIILVILGSVLALLILFLLLLLFLKR 730 (880)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 33455555555555544444444433
No 202
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=33.81 E-value=42 Score=23.73 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=13.8
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhheecc
Q 044133 352 TIATRLVAIILAMVAFLALIFGILIIRRRR 381 (384)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (384)
....+.+.++++.-+++++.+.+-+.+-||
T Consensus 50 ~~~ylYIL~vmgffgff~~GImLsYiRSKk 79 (138)
T 2k21_A 50 KLEALYVLMVLGFFGFFTLGIMLSYIRSKK 79 (138)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceeehHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 333444545555544444444444444333
No 203
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=28.41 E-value=58 Score=15.81 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 044133 359 AIILAMVAFLALI 371 (384)
Q Consensus 359 ~~~~~~~~~~~~~ 371 (384)
-++++.++++.++
T Consensus 7 eviaglvalltfl 19 (32)
T 2lx0_A 7 EVIAGLVALLTFL 19 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444445554333
No 204
>2l35_A DAP12-NKG2C_TM; immunoreceptor, transmembrane assembly, DAP12-NKG2C complex; NMR {Homo sapiens}
Probab=26.50 E-value=86 Score=19.03 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Q 044133 355 TRLVAIILAMVAFLALIFGILII 377 (384)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~ 377 (384)
..+++++++-+++.+.++...||
T Consensus 7 ~tvaGIIv~DIi~TllLal~VY~ 29 (63)
T 2l35_A 7 GVLAGIVVGDLVLTVLIALAVYF 29 (63)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hheehhHHHHHHHHHHHHHHHHh
Confidence 35666776654444444333333
No 205
>1cd1_A CD1, MCD1D.1; immunology, MHC, TCR, glycoprotein, signal, immunoglobulin fold, T-cell; 2.67A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=25.31 E-value=15 Score=31.25 Aligned_cols=9 Identities=0% Similarity=-0.356 Sum_probs=0.0
Q ss_pred HHHHhhhee
Q 044133 371 IFGILIIRR 379 (384)
Q Consensus 371 ~~~~~~~~~ 379 (384)
++.++.-++
T Consensus 302 ~~~~~~~~~ 310 (315)
T 1cd1_A 302 YYIWRRRSA 310 (315)
T ss_dssp ---------
T ss_pred HhheehhcC
Confidence 344444433
Done!