BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044134
(363 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 197 bits (501), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 120/305 (39%), Positives = 161/305 (52%), Gaps = 15/305 (4%)
Query: 66 SSSYYHRRCPXXXXXXXXXXXXXXWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDG- 124
+ ++Y CP + D +I SL+RLH+HDC V+GCDGS+LLNN
Sbjct: 3 TPTFYRETCPNLFPIVFGVIFDASFTDP--RIGASLMRLHFHDCFVQGCDGSVLLNNTDT 60
Query: 125 --SERRA--NVSKTLRGFEVIDDIKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDV 180
SE+ A N++ ++RG +V++DIK +E CP TVSC +VL GG W V
Sbjct: 61 IESEQDALPNIN-SIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPV 119
Query: 181 PLGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQV 239
PLGR+D + A+ +P N+T L F GL DLV LSG HT GR C+
Sbjct: 120 PLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSGGHTFGRARCSTF 179
Query: 240 QDRIYNYKGTGKPDPSINEKYLNFLQRRC-RWASED--AELDAESPWKFDNMYYKNLQNG 296
+R+YN+ TG PDP++N YL L+ RC + A+ D LD +P +FDN YY NL
Sbjct: 180 INRLYNFSNTGNPDPTLNTTYLEVLRARCPQNATGDNLTNLDLSTPDQFDNRYYSNLLQL 239
Query: 297 XXXXXXXXXXXSD--KRTEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRTN 354
S T PI + +S + + F SM K G + VL+GDEGEIR
Sbjct: 240 NGLLQSDQELFSTPGADTIPIVNSFSSNQNTFFSN-FRVSMIKMGNIGVLTGDEGEIRLQ 298
Query: 355 CNFVN 359
CNFVN
Sbjct: 299 CNFVN 303
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 192 bits (489), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 154/304 (50%), Gaps = 15/304 (4%)
Query: 67 SSYYHRRCPXXXXXXXXXXXXXXWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGS- 125
+++Y CP + D +I SL+RLH+HDC V GCD SILL++ GS
Sbjct: 5 ATFYSGTCPNASAIVRSTIQQA--LQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSI 62
Query: 126 --ERRA--NVSKTLRGFEVIDDIKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVP 181
E+ A NV+ RGF V+D+IK LE CP VSC L GG W V
Sbjct: 63 QSEKNAGPNVNSA-RGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTVL 121
Query: 182 LGRKDGRVS-IGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQ 240
LGR+D + + +P ++++ + F ++GL +DLV LSGAHT GR C
Sbjct: 122 LGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCGVFN 181
Query: 241 DRIYNYKGTGKPDPSINEKYLNFLQRRCRW---ASEDAELDAESPWKFDNMYYKNLQ--N 295
+R++N+ GTG PDP++N L+ LQ+ C AS LD +P FDN Y+ NLQ +
Sbjct: 182 NRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSND 241
Query: 296 GXXXXXXXXXXXSDKRTEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRTNC 355
G + T I + AS + + Q F SM G ++ L+G GEIR +C
Sbjct: 242 GLLQSDQELFSTTGSSTIAIVTSFASNQTLFF-QAFAQSMINMGNISPLTGSNGEIRLDC 300
Query: 356 NFVN 359
VN
Sbjct: 301 KKVN 304
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 184 bits (467), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 153/309 (49%), Gaps = 15/309 (4%)
Query: 66 SSSYYHRRCPXXXXXXXXXXXXXXWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGS 125
+ ++Y CP + D +IA S+LRLH+HDC V GCD SILL+N S
Sbjct: 4 TPTFYDNSCPNVSNIVRDTIVNE--LRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 126 ERRAN----VSKTLRGFEVIDDIKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVP 181
R + + RGF VID +KA +E CP+TVSC L GG W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 182 LGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGL-EVSDLVILSGAHTIGRTSCAQV 239
LGR+D + A+ +P + L + F+++GL SDLV LSG HT G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRSI 181
Query: 240 QDRIYNYKGTGKPDPSINEKYLNFLQRRCRW---ASEDAELDAESPWKFDNMYYKNLQNG 296
DR+YN+ TG PDP++N YL L+ C S + D +P FDN YY NL+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 297 XXXXXXXXXXXSDKR---TEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRT 353
S T P+ ++ A+ + F +M + G + L+G +G+IR
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-FVEAMDRMGNITPLTGTQGQIRL 300
Query: 354 NCNFVNSHS 362
NC VNS+S
Sbjct: 301 NCRVVNSNS 309
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 184 bits (466), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 154/309 (49%), Gaps = 15/309 (4%)
Query: 66 SSSYYHRRCPXXXXXXXXXXXXXXWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGS 125
+ ++Y CP + D +IA S+LRLH+HDC V GCD SILL+N S
Sbjct: 4 TPTFYDNSCPNVSNIVRDTIVNE--LRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 126 ERRAN----VSKTLRGFEVIDDIKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVP 181
R + + RGF VID +KA +E CP+TVSC L GG W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 182 LGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGL-EVSDLVILSGAHTIGRTSCAQV 239
LGR+D + A+ +P + L + F+++GL SDLV LSG HT G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 240 QDRIYNYKGTGKPDPSINEKYLNFLQRRCRW---ASEDAELDAESPWKFDNMYYKNLQNG 296
DR+YN+ TG PDP++N YL L+ C S ++D +P FDN YY NL+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDMDLRTPTIFDNKYYVNLEEQ 241
Query: 297 XXXXXXXXXXXSDKR---TEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRT 353
S T P+ ++ A+ + F +M + G + L+G +G+IR
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-FVEAMDRMGNITPLTGTQGQIRL 300
Query: 354 NCNFVNSHS 362
NC VNS+S
Sbjct: 301 NCRVVNSNS 309
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 183 bits (465), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 153/309 (49%), Gaps = 15/309 (4%)
Query: 66 SSSYYHRRCPXXXXXXXXXXXXXXWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGS 125
+ ++Y CP + D +IA S+LRLH+HDC V GCD SILL+N S
Sbjct: 3 TPTFYDNSCPNVSNIVRDTIVNE--LRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 126 ERRAN----VSKTLRGFEVIDDIKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVP 181
R + + RGF VID +KA +E CP+TVSC L GG W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 182 LGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGL-EVSDLVILSGAHTIGRTSCAQV 239
LGR+D + A+ +P + L + F+++GL SDLV LSG HT G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 240 QDRIYNYKGTGKPDPSINEKYLNFLQRRCRW---ASEDAELDAESPWKFDNMYYKNLQNG 296
DR+YN+ TG PDP++N YL L+ C S + D +P FDN YY NL+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 297 XXXXXXXXXXXSDKR---TEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRT 353
S T P+ ++ A+ + F +M + G + L+G +G+IR
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-FVEAMDRMGNITPLTGTQGQIRL 299
Query: 354 NCNFVNSHS 362
NC VNS+S
Sbjct: 300 NCRVVNSNS 308
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 153/309 (49%), Gaps = 15/309 (4%)
Query: 66 SSSYYHRRCPXXXXXXXXXXXXXXWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGS 125
+ ++Y CP + D +IA S+LRLH+HDC V GCD SILL+N S
Sbjct: 4 TPTFYDNSCPNVSNIVRDTIVNE--LRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 126 ERRAN----VSKTLRGFEVIDDIKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVP 181
R + + RGF VID +KA +E CP+TVSC L GG W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 182 LGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGL-EVSDLVILSGAHTIGRTSCAQV 239
LGR+D + A+ +P + L + F+++GL SDLV LSG HT G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 240 QDRIYNYKGTGKPDPSINEKYLNFLQRRCRW---ASEDAELDAESPWKFDNMYYKNLQNG 296
DR+YN+ TG PDP++N YL L+ C S + D +P FDN YY NL+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 297 XXXXXXXXXXXSDKR---TEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRT 353
S T P+ ++ A+ + F +M + G + L+G +G+IR
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-FVEAMDRMGNITPLTGTQGQIRL 300
Query: 354 NCNFVNSHS 362
NC VNS+S
Sbjct: 301 NCRVVNSNS 309
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 183 bits (464), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 153/309 (49%), Gaps = 15/309 (4%)
Query: 66 SSSYYHRRCPXXXXXXXXXXXXXXWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGS 125
+ ++Y CP + D +IA S+LRLH+HDC V GCD SILL+N S
Sbjct: 3 TPTFYDNSCPNVSNIVRDTIVNE--LRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 126 ERRAN----VSKTLRGFEVIDDIKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVP 181
R + + RGF VID +KA +E CP+TVSC L GG W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 182 LGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGL-EVSDLVILSGAHTIGRTSCAQV 239
LGR+D + A+ +P + L + F+++GL SDLV LSG HT G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 240 QDRIYNYKGTGKPDPSINEKYLNFLQRRCRW---ASEDAELDAESPWKFDNMYYKNLQNG 296
DR+YN+ TG PDP++N YL L+ C S + D +P FDN YY NL+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 297 XXXXXXXXXXXSDKR---TEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRT 353
S T P+ ++ A+ + F +M + G + L+G +G+IR
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-FVEAMDRMGNITPLTGTQGQIRL 299
Query: 354 NCNFVNSHS 362
NC VNS+S
Sbjct: 300 NCRVVNSNS 308
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 182 bits (462), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 109/309 (35%), Positives = 153/309 (49%), Gaps = 15/309 (4%)
Query: 66 SSSYYHRRCPXXXXXXXXXXXXXXWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGS 125
+ ++Y CP + D +IA S+LRLH+HDC V GCD SILL+N S
Sbjct: 4 TPTFYDNSCPNVSNIVRDTIVNE--LRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 126 ERRAN----VSKTLRGFEVIDDIKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVP 181
R + + RGF VID +KA +E CP+TVSC L GG W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 182 LGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGL-EVSDLVILSGAHTIGRTSCAQV 239
LGR+D + A+ +P + L + F+++GL SDLV LSG HT G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 240 QDRIYNYKGTGKPDPSINEKYLNFLQRRCRW---ASEDAELDAESPWKFDNMYYKNLQNG 296
DR+YN+ TG PDP++N YL L+ C S + D +P FDN YY NL+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 297 XXXXXXXXXXXSDKR---TEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRT 353
S T P+ ++ A+ + F +M + G + L+G +G+IR
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-FVEAMDRMGNITPLTGTQGQIRL 300
Query: 354 NCNFVNSHS 362
NC VNS+S
Sbjct: 301 NCRVVNSNS 309
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 181 bits (460), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 108/308 (35%), Positives = 152/308 (49%), Gaps = 15/308 (4%)
Query: 66 SSSYYHRRCPXXXXXXXXXXXXXXWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGS 125
+ ++Y CP + D +IA S+LRLH+HDC V GCD SILL+N S
Sbjct: 4 TPTFYDNSCPNVSNIVRDTIVNE--LRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 61
Query: 126 ERRAN----VSKTLRGFEVIDDIKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVP 181
R + + RGF VID +KA +E CP+TVSC L GG W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 182 LGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGL-EVSDLVILSGAHTIGRTSCAQV 239
LGR+D + A+ +P + L + F+++GL SDLV LSG HT G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 240 QDRIYNYKGTGKPDPSINEKYLNFLQRRCRW---ASEDAELDAESPWKFDNMYYKNLQNG 296
DR+YN+ TG PDP++N YL L+ C S + D +P FDN YY NL+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 297 XXXXXXXXXXXSDKR---TEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRT 353
S T P+ ++ A+ + F +M + G + L+G +G+IR
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-FVEAMDRMGNITPLTGTQGQIRL 300
Query: 354 NCNFVNSH 361
NC VNS+
Sbjct: 301 NCRVVNSN 308
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 153/309 (49%), Gaps = 15/309 (4%)
Query: 66 SSSYYHRRCPXXXXXXXXXXXXXXWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGS 125
+ ++Y CP + D +IA S+LRLH+HDC V GCD SILL+N S
Sbjct: 3 TPTFYDNSCPNVSNIVRDTIVNE--LRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 126 ERRAN----VSKTLRGFEVIDDIKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVP 181
R + + RGF VID +KA +E CP+TVSC L GG W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 182 LGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGL-EVSDLVILSGAHTIGRTSCAQV 239
LGR+D + A+ +P + L + F+++GL SDLV LSG H+ G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFI 180
Query: 240 QDRIYNYKGTGKPDPSINEKYLNFLQRRCRW---ASEDAELDAESPWKFDNMYYKNLQNG 296
DR+YN+ TG PDP++N YL L+ C S + D +P FDN YY NL+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 297 XXXXXXXXXXXSDKR---TEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRT 353
S T P+ ++ A+ + F +M + G + L+G +G+IR
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-FVEAMDRMGNITPLTGTQGQIRL 299
Query: 354 NCNFVNSHS 362
NC VNS+S
Sbjct: 300 NCRVVNSNS 308
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 181 bits (460), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 151/307 (49%), Gaps = 15/307 (4%)
Query: 66 SSSYYHRRCPXXXXXXXXXXXXXXWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGS 125
+ ++Y CP + D +IA S+LRLH+HDC V GCD SILL+N S
Sbjct: 3 TPTFYDNSCPNVSNIVRDTIVNE--LRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 126 ERRAN----VSKTLRGFEVIDDIKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVP 181
R + + RGF VID +KA +E CP+TVSC L GG W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 182 LGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGL-EVSDLVILSGAHTIGRTSCAQV 239
LGR+D + A+ +P + L + F+++GL SDLV LSG HT G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 240 QDRIYNYKGTGKPDPSINEKYLNFLQRRCRW---ASEDAELDAESPWKFDNMYYKNLQNG 296
DR+YN+ TG PDP++N YL L+ C S + D +P FDN YY NL+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 297 XXXXXXXXXXXSDKR---TEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRT 353
S T P+ ++ A+ + F +M + G + L+G +G+IR
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-FVEAMDRMGNITPLTGTQGQIRL 299
Query: 354 NCNFVNS 360
NC VNS
Sbjct: 300 NCRVVNS 306
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 181 bits (458), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 100/274 (36%), Positives = 140/274 (51%), Gaps = 11/274 (4%)
Query: 97 IAPSLLRLHYHDCAVRGCDGSILL----NNDGSERRANVSKTLRGFEVIDDIKAELEKEC 152
IAP L+R+H+HDC VRGCD S+LL NN + + +LRGFEVI K+ +E C
Sbjct: 32 IAPGLIRMHFHDCFVRGCDASVLLDSTANNTAEKDAIPNNPSLRGFEVITAAKSAVEAAC 91
Query: 153 PKTVSCXXXXXXXXXXXTVLLGGEYWDVPLGRKDGRVSIGKEADI-VPMGHDNVTTLLEF 211
P+TVSC L G + VP GR+DG VS+ EA+ +P N T L+
Sbjct: 92 PQTVSCADILAFAARDSANLAGNITYQVPSGRRDGTVSLASEANAQIPSPLFNATQLINS 151
Query: 212 FQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRC--- 268
F + L ++V LSGAH+IG C+ +R+YN+ DP+++ Y L+ C
Sbjct: 152 FANKTLTADEMVTLSGAHSIGVAHCSSFTNRLYNFNSGSGIDPTLSPSYAALLRNTCPAN 211
Query: 269 --RWASEDAELDAESPWKFDNMYYKNLQNGXXXXXXXXXXXSDKRTEPIAKALASMPSFL 326
R+ LD +P DNMYY +Q ++ KA A M
Sbjct: 212 STRFTPITVSLDIITPSVLDNMYYTGVQLTLGLLTSDQALVTEANLSAAVKANA-MNLTA 270
Query: 327 YGQIFGASMKKFGKVNVLSGDEGEIRTNCNFVNS 360
+ F +M K G++ VL+G +GEIRTNC+ VNS
Sbjct: 271 WASKFAQAMVKMGQIEVLTGTQGEIRTNCSVVNS 304
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/303 (35%), Positives = 148/303 (48%), Gaps = 13/303 (4%)
Query: 67 SSYYHRRCPXXXXXXXXXXXXXXWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGS- 125
+++Y CP D +I SL+RLH+HDC V GCD SILL+N GS
Sbjct: 6 ATFYAGTCPNASAMVRTIVQQA--FQSDSRIGASLIRLHFHDCFVLGCDASILLDNSGSI 63
Query: 126 --ERRANV-SKTLRGFEVIDDIKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVPL 182
E+ A + + RGF V+D+IK LE CP VSC L GG W V L
Sbjct: 64 ISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWTVDL 123
Query: 183 GRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQD 241
GR+D + A+ +P ++ + F ++GL +DLV LSGAHT GR +C +
Sbjct: 124 GRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGVFSN 183
Query: 242 RIYNYKGTGKPDPSINEKYLNFLQRRCRW---ASEDAELDAESPWKFDNMYYKNLQ--NG 296
R++N+ G G PDP++N L+ LQ C S LD +P FDN Y+ NLQ NG
Sbjct: 184 RLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDAFDNNYFTNLQSNNG 243
Query: 297 XXXXXXXXXXXSDKRTEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRTNCN 356
+ T I + AS + + Q F SM G ++ L+G GEIR +C
Sbjct: 244 LLQSDQELFSTTGSATIAIVTSFASNQTLFF-QAFAQSMINMGNISPLTGSSGEIRLDCK 302
Query: 357 FVN 359
N
Sbjct: 303 KTN 305
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/309 (34%), Positives = 152/309 (49%), Gaps = 15/309 (4%)
Query: 66 SSSYYHRRCPXXXXXXXXXXXXXXWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGS 125
+ ++Y CP + D +IA S+LRLH+ DC V GCD SILL+N S
Sbjct: 4 TPTFYDNSCPNVSNIVRDTIVNE--LRSDPRIAASILRLHFEDCFVNGCDASILLDNTTS 61
Query: 126 ERRAN----VSKTLRGFEVIDDIKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVP 181
R + + RGF VID +KA +E CP+TVSC L GG W VP
Sbjct: 62 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 121
Query: 182 LGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGL-EVSDLVILSGAHTIGRTSCAQV 239
LGR+D + A+ +P + L + F+++GL SDLV LSG HT G+ C +
Sbjct: 122 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 181
Query: 240 QDRIYNYKGTGKPDPSINEKYLNFLQRRCRW---ASEDAELDAESPWKFDNMYYKNLQNG 296
DR+YN+ TG PDP++N YL L+ C S + D +P FDN YY NL+
Sbjct: 182 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 241
Query: 297 XXXXXXXXXXXSDKR---TEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRT 353
S T P+ ++ A+ + F +M + G + L+G +G+IR
Sbjct: 242 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-FVEAMDRMGNITPLTGTQGQIRL 300
Query: 354 NCNFVNSHS 362
NC VNS+S
Sbjct: 301 NCRVVNSNS 309
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 150/307 (48%), Gaps = 15/307 (4%)
Query: 66 SSSYYHRRCPXXXXXXXXXXXXXXWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGS 125
+ ++Y CP + D +IA S+LRLH+HDC V GCD SILL+N S
Sbjct: 3 TPTFYDNSCPNVSNIVRDTIVNE--LRSDPRIAASILRLHFHDCFVNGCDASILLDNTTS 60
Query: 126 ERRAN----VSKTLRGFEVIDDIKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVP 181
R + + RGF VID +KA +E CP+TVSC L GG W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 182 LGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGL-EVSDLVILSGAHTIGRTSCAQV 239
LGR+D + A+ +P + L + F+++GL SDLV L G HT G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFI 180
Query: 240 QDRIYNYKGTGKPDPSINEKYLNFLQRRCRW---ASEDAELDAESPWKFDNMYYKNLQNG 296
DR+YN+ TG PDP++N YL L+ C S + D +P FDN YY NL+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 297 XXXXXXXXXXXSDKR---TEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRT 353
S T P+ ++ A+ + F +M + G + L+G +G+IR
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-FVEAMDRMGNITPLTGTQGQIRL 299
Query: 354 NCNFVNS 360
NC VNS
Sbjct: 300 NCRVVNS 306
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 178 bits (451), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 150/303 (49%), Gaps = 13/303 (4%)
Query: 66 SSSYYHRRCPXXXXXXXXXXXXXXWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGS 125
S Y + CP + + ++A SL+RLH+HDC V GCD S+LL+ S
Sbjct: 3 SPDIYAKSCPNLVQIVRKQVAIA--LKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADS 60
Query: 126 ERRA--NVSKTLRGFEVIDDIKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVPLG 183
E+ A N++ RGFEVID IKA +E CP VSC VL GG W V LG
Sbjct: 61 EKLAIPNINSA-RGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVALG 119
Query: 184 RKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRI 243
RKDG V+ A+ +P + + ++ F ++ L ++D+V LSGAHT G+ CA +R+
Sbjct: 120 RKDGLVANQNSANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNRL 179
Query: 244 YNYKGTGKPDPSINEKYLNFLQRRCRWASED---AELDAESPWKFDNMYYKNLQNGXXXX 300
+N+ G G PD ++ L+ LQ C A LD + FDN Y+KNL G
Sbjct: 180 FNFTGAGNPDATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDTFDNNYFKNLLEGKGLL 239
Query: 301 XXXXXXXSDKRTEPIAKALA---SMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRTNCNF 357
S K L S L+ + F +M + G N+ +G GE+RTNC
Sbjct: 240 SSDQILFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMG--NISNGASGEVRTNCRV 297
Query: 358 VNS 360
+N+
Sbjct: 298 INN 300
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 177 bits (449), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 107/309 (34%), Positives = 151/309 (48%), Gaps = 15/309 (4%)
Query: 66 SSSYYHRRCPXXXXXXXXXXXXXXWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGS 125
+ ++Y CP + D +IA S+L LH+ DC V GCD SILL+N S
Sbjct: 3 TPTFYDNSCPNVSNIVRDTIVNE--LRSDPRIAASILSLHFEDCFVNGCDASILLDNTTS 60
Query: 126 ERRAN----VSKTLRGFEVIDDIKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVP 181
R + + RGF VID +KA +E CP+TVSC L GG W VP
Sbjct: 61 FRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVP 120
Query: 182 LGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGL-EVSDLVILSGAHTIGRTSCAQV 239
LGR+D + A+ +P + L + F+++GL SDLV LSG HT G+ C +
Sbjct: 121 LGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFI 180
Query: 240 QDRIYNYKGTGKPDPSINEKYLNFLQRRCRW---ASEDAELDAESPWKFDNMYYKNLQNG 296
DR+YN+ TG PDP++N YL L+ C S + D +P FDN YY NL+
Sbjct: 181 MDRLYNFSNTGLPDPTLNTTYLQTLRGLCPLNGNLSALVDFDLRTPTIFDNKYYVNLEEQ 240
Query: 297 XXXXXXXXXXXSDKR---TEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRT 353
S T P+ ++ A+ + F +M + G + L+G +G+IR
Sbjct: 241 KGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNA-FVEAMDRMGNITPLTGTQGQIRL 299
Query: 354 NCNFVNSHS 362
NC VNS+S
Sbjct: 300 NCRVVNSNS 308
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 174 bits (442), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 148/302 (49%), Gaps = 18/302 (5%)
Query: 66 SSSYYHRRCPXXXXXXXXXXXXXXWVDKDYKIAPSLLRLHYHDCAVRGCDGSILL----N 121
SS++Y +CP V K+ ++ SLLRLH+HDC V+GCD S+LL N
Sbjct: 3 SSNFYATKCPNALSTIKSAVNSA--VAKEARMGASLLRLHFHDCFVQGCDASVLLDDTSN 60
Query: 122 NDGSERRANVSKTLRGFEVIDDIKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVP 181
G + + ++RGFEVID IK+++E CP VSC V LGG W+V
Sbjct: 61 FTGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNVL 120
Query: 182 LGRKDGRV-SIGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQ 240
LGR+D S+ +P N++ L+ F + G +LV LSGAHTIG+ C +
Sbjct: 121 LGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAFR 180
Query: 241 DRIYNYKGTGKPDPSINEKYLNFLQRRCRWASEDAEL---DAESPWKFDNMYYKNLQNGX 297
RIYN + +I+ Y LQ C D L D +P KFDN YY NL+N
Sbjct: 181 TRIYN-------ESNIDPTYAKSLQANCPSVGGDTNLSPFDVTTPNKFDNAYYINLRNKK 233
Query: 298 XXXXXXXXXXSDKRTEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRTNCNF 357
+ T+ A ++ + + FG +M K G ++ L+G G+IRTNC
Sbjct: 234 GLLHSDQQLFNGVSTDSQVTAYSNNAA-TFNTDFGNAMIKMGNLSPLTGTSGQIRTNCRK 292
Query: 358 VN 359
N
Sbjct: 293 TN 294
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 158 bits (400), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 149/280 (53%), Gaps = 18/280 (6%)
Query: 91 VDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGS---ERRANVSKTLR--GFEVIDDIK 145
V KD +A LLRLH+HDC V+GCD S+LL+ + E++A + TLR F+ ++DI+
Sbjct: 33 VRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSATGPGEQQAPPNLTLRPSAFKAVNDIR 92
Query: 146 AELEKECP-KTVSCXXXXXXXXXXXTVLLGGEYWDVPLGRKDGRVSIGKEADI---VPMG 201
LE+EC VSC V+ GG + VPLGR+D R S D+ +P
Sbjct: 93 DRLERECRGAVVSCSDILALAARDSVVVSGGPDYRVPLGRRDSR-SFASTQDVLSDLPGP 151
Query: 202 HDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYL 261
NV +LL +GL+ +DLV +SG HTIG C+ +DR++ +PDP+I+ +L
Sbjct: 152 SSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHCSSFEDRLFP-----RPDPTISPTFL 206
Query: 262 NFLQRRCRWASEDAE--LDAESPWKFDNMYYKNLQNGXXXXXXXXXXXSDKRTEPIAKAL 319
+ L+R C D LD +P FDN YY +L N ++ T PI +
Sbjct: 207 SRLKRTCPAKGTDRRTVLDVRTPNVFDNKYYIDLVNREGLFVSDQDLFTNAITRPIVERF 266
Query: 320 ASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRTNCNFVN 359
A + Q FG S+ K G++ V + D+GE+R NC+ N
Sbjct: 267 AQSQQDFFEQ-FGVSIGKMGQMRVRTSDQGEVRRNCSVRN 305
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 61/152 (40%), Gaps = 14/152 (9%)
Query: 91 VDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGSERRANVS-------KTLRGFEVIDD 143
+ + ++ PSL+RL +H+ A C DGS A++ +G ++
Sbjct: 20 ISEKLELGPSLIRLAWHEAASYDC-----FKKDGSPNSASMRFKPECLYAGNKGLDIPRK 74
Query: 144 IKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVPLGRKDGR-VSIGKEADIVPMGH 202
L+K+ P+ +S +GG GR D + S+ +P G
Sbjct: 75 ALETLKKKYPQ-ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGS 133
Query: 203 DNVTTLLEFFQSMGLEVSDLVILSGAHTIGRT 234
+ + E F+ +G + V L GAHT G T
Sbjct: 134 KTQSHVREVFRRLGFNDQETVALIGAHTCGET 165
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T Y+G G + NE YLN L +
Sbjct: 154 FFQRLNMNDREVVALMGAHALGKTHLKNS-----GYEGGGANNVFTNEFYLNLLNEDWKL 208
Query: 271 ASEDA 275
DA
Sbjct: 209 EKNDA 213
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T Y+G G + NE YLN L +
Sbjct: 155 FFQRLNMNDREVVALMGAHALGKTHLKNS-----GYEGGGANNVFTNEFYLNLLNEDWKL 209
Query: 271 ASEDA 275
DA
Sbjct: 210 EKNDA 214
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T Y+G G + NE YLN L +
Sbjct: 160 FFQRLNMNDREVVALMGAHALGKTHLKNS-----GYEGGGANNVFTNEFYLNLLNEDWKL 214
Query: 271 ASEDA 275
DA
Sbjct: 215 EKNDA 219
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 183 GRKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDR 242
GR D + +P + + FFQ + + ++V L GAHT+G+T +++
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKT---HLKNS 185
Query: 243 IYNYKGTGKPDPSINEKYLNFLQRRCRWASEDA 275
Y T P+ N YLN L + DA
Sbjct: 186 GYEGPWTANPNVFDNSFYLNLLNEDWKLEKNDA 218
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 29/135 (21%)
Query: 208 LLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRR 267
L + F MGL ++V LSGAHT+GR+ DR G GKP+ + +
Sbjct: 142 LRDVFYRMGLNDKEIVALSGAHTLGRSR----PDR----SGWGKPETKYTKDGPGAPGGQ 193
Query: 268 CRWASEDAELDAESPW-KFDNMYYKNLQNGXXXXXXXXXXXSDKRTEPIAKALASMPSF- 325
W ++ W KFDN Y+K+++ D P AL PSF
Sbjct: 194 S-WTAQ---------WLKFDNSYFKDIKE---------RRDEDLLVLPTDAALFEDPSFK 234
Query: 326 LYGQIFGASMKKFGK 340
+Y + + A + F K
Sbjct: 235 VYAEKYAADPEAFFK 249
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 14/150 (9%)
Query: 91 VDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGSERRANVS-------KTLRGFEVIDD 143
+ + ++ PSL+RL +H+ A C DGS A++ +G ++
Sbjct: 19 ISEKLELGPSLIRLAWHEAASYDC-----FKKDGSPNSASMRFKPECLYAGNKGLDIPRK 73
Query: 144 IKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVPLGRKDGR-VSIGKEADIVPMGH 202
L+K+ P+ +S +GG GR D + S+ +P G
Sbjct: 74 ALETLKKKYPQ-ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGS 132
Query: 203 DNVTTLLEFFQSMGLEVSDLVILSGAHTIG 232
+ + E F+ +G + V L GAHT G
Sbjct: 133 KTQSHVREVFRRLGFNDQETVALIGAHTCG 162
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 35/150 (23%), Positives = 60/150 (40%), Gaps = 14/150 (9%)
Query: 91 VDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGSERRANVS-------KTLRGFEVIDD 143
+ + ++ PSL+RL +H+ A C DGS A++ +G ++
Sbjct: 20 ISEKLELGPSLIRLAWHEAASYDC-----FKKDGSPNSASMRFKPECLYAGNKGLDIPRK 74
Query: 144 IKAELEKECPKTVSCXXXXXXXXXXXTVLLGGEYWDVPLGRKDGR-VSIGKEADIVPMGH 202
L+K+ P+ +S +GG GR D + S+ +P G
Sbjct: 75 ALETLKKKYPQ-ISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDGRLPDGS 133
Query: 203 DNVTTLLEFFQSMGLEVSDLVILSGAHTIG 232
+ + E F+ +G + V L GAHT G
Sbjct: 134 KTQSHVREVFRRLGFNDQETVALIGAHTCG 163
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 3/93 (3%)
Query: 183 GRKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDR 242
GR D + +P + + FFQ + + ++V LSGAHT+G+T +++
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALSGAHTLGKT---HLKNS 185
Query: 243 IYNYKGTGKPDPSINEKYLNFLQRRCRWASEDA 275
Y T + N YLN L + DA
Sbjct: 186 GYEGPWTANNNVFDNSFYLNLLNEDWKLEKNDA 218
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 35.0 bits (79), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y G + NE YLN L +
Sbjct: 157 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKL 213
Query: 271 ASEDA 275
DA
Sbjct: 214 EKNDA 218
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 34.7 bits (78), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y G + NE YLN L +
Sbjct: 157 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKL 213
Query: 271 ASEDA 275
DA
Sbjct: 214 EKNDA 218
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y G + NE YLN L +
Sbjct: 157 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKL 213
Query: 271 ASEDA 275
DA
Sbjct: 214 EKNDA 218
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y G + NE YLN L +
Sbjct: 155 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKL 211
Query: 271 ASEDA 275
DA
Sbjct: 212 EKNDA 216
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 34.7 bits (78), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y G + NE YLN L +
Sbjct: 154 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKL 210
Query: 271 ASEDA 275
DA
Sbjct: 211 EKNDA 215
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y G + NE YLN L +
Sbjct: 159 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPGGAANNVFTNEFYLNLLNEDWKL 215
Query: 271 ASEDA 275
DA
Sbjct: 216 EKNDA 220
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 34.7 bits (78), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NEKYLN L +
Sbjct: 154 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEKYLNLLNEDWKL 210
Query: 271 ASEDA 275
DA
Sbjct: 211 EKNDA 215
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 183 GRKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDR 242
GR D + +P + + FFQ + + ++V L GAHT+G+T +++
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKT---HLKNS 185
Query: 243 IYNYKGTGKPDPSINEKYLNFLQRRCRWASEDA 275
Y T + N YLN L + DA
Sbjct: 186 GYEGPWTANNNVFDNSFYLNLLNEDWKLEKNDA 218
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 3/93 (3%)
Query: 183 GRKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDR 242
GR D + +P + + FFQ + + ++V L GAHT+G+T +++
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKT---HLKNS 185
Query: 243 IYNYKGTGKPDPSINEKYLNFLQRRCRWASEDA 275
Y T + N YLN L + DA
Sbjct: 186 GYEGPWTANNNVFDNSFYLNLLNEDWKLEKNDA 218
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 157 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNENWKL 213
Query: 271 ASEDA 275
DA
Sbjct: 214 EKNDA 218
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 157 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEGYLNLLNEDWKL 213
Query: 271 ASEDA 275
DA
Sbjct: 214 EKNDA 218
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 154 FFQRLNMNDREVVALKGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 210
Query: 271 ASEDA 275
DA
Sbjct: 211 EKNDA 215
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T ++++ Y + NE YLN L +
Sbjct: 154 FFQRLNMNDREVVALMGAHALGKT---ELKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 210
Query: 271 ASEDA 275
DA
Sbjct: 211 EKNDA 215
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 32.0 bits (71), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 154 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEYYLNLLNEDWKL 210
Query: 271 ASEDA 275
DA
Sbjct: 211 EKNDA 215
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 32.0 bits (71), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 159 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPQGAANNVFTNEFYLNLLNEDWKL 215
Query: 271 ASEDA 275
DA
Sbjct: 216 EKNDA 220
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 154 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPQGAANNVFTNEFYLNLLNEDWKL 210
Query: 271 ASEDA 275
DA
Sbjct: 211 EKNDA 215
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 154 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 210
Query: 271 ASEDA 275
DA
Sbjct: 211 EKNDA 215
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 157 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 213
Query: 271 ASEDA 275
DA
Sbjct: 214 EKNDA 218
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 183 GRKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDR 242
GR D + +P + + FFQ + + ++V L GAH +G+T +++
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKT---HLKNS 185
Query: 243 IYNYKGTGKPDPSINEKYLNFLQRRCRWASEDA 275
Y + NE YLN L + DA
Sbjct: 186 GYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 218
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 183 GRKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDR 242
GR D + +P + + FFQ + + ++V L GAH +G+T +++
Sbjct: 131 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKT---HLKNS 187
Query: 243 IYNYKGTGKPDPSINEKYLNFLQRRCRWASEDA 275
Y + NE YLN L + DA
Sbjct: 188 GYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 220
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 183 GRKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDR 242
GR D + +P + + FFQ + + ++V L GAH +G+T +++
Sbjct: 128 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKT---HLKNS 184
Query: 243 IYNYKGTGKPDPSINEKYLNFLQRRCRWASEDA 275
Y + NE YLN L + DA
Sbjct: 185 GYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 217
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 183 GRKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDR 242
GR D + +P + + FFQ + + ++V L GAH +G+T +++
Sbjct: 131 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKT---HLKNS 187
Query: 243 IYNYKGTGKPDPSINEKYLNFLQRRCRWASEDA 275
Y + NE YLN L + DA
Sbjct: 188 GYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 220
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 159 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 215
Query: 271 ASEDA 275
DA
Sbjct: 216 EKNDA 220
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 183 GRKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDR 242
GR D + +P + + FFQ + + ++V L GAH +G+T +++
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKT---HLKNS 185
Query: 243 IYNYKGTGKPDPSINEKYLNFLQRRCRWASEDA 275
Y + NE YLN L + DA
Sbjct: 186 GYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 218
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 154 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 210
Query: 271 ASEDA 275
DA
Sbjct: 211 EKNDA 215
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 183 GRKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDR 242
GR D + +P + + FFQ + + ++V L GAH +G+T +++
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKT---HLKNS 185
Query: 243 IYNYKGTGKPDPSINEKYLNFLQRRCRWASEDA 275
Y + NE YLN L + DA
Sbjct: 186 GYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 218
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 154 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 210
Query: 271 ASEDA 275
DA
Sbjct: 211 EKNDA 215
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 183 GRKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDR 242
GR D + +P + + FFQ + + ++V L GAH +G+T +++
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKT---HLKNS 185
Query: 243 IYNYKGTGKPDPSINEKYLNFLQRRCRWASEDA 275
Y + NE YLN L + DA
Sbjct: 186 GYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 218
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 157 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 213
Query: 271 ASEDA 275
DA
Sbjct: 214 EKNDA 218
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 160 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 216
Query: 271 ASEDA 275
DA
Sbjct: 217 EKNDA 221
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSI--NEKYLNFLQRRC 268
FFQ + + ++V L GAH +G+T + Y+G ++ NE YLN L
Sbjct: 157 FFQRLNMNDREVVALMGAHALGKTHLKRS-----GYEGPWGAANNVFTNEFYLNLLNENW 211
Query: 269 RWASEDA 275
+ DA
Sbjct: 212 KLEKNDA 218
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 159 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 215
Query: 271 ASEDA 275
DA
Sbjct: 216 EKNDA 220
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 159 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 215
Query: 271 ASEDA 275
DA
Sbjct: 216 EKNDA 220
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 154 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 210
Query: 271 ASEDA 275
DA
Sbjct: 211 EKNDA 215
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 31.6 bits (70), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 160 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 216
Query: 271 ASEDA 275
DA
Sbjct: 217 EKNDA 221
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 157 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 213
Query: 271 ASEDA 275
DA
Sbjct: 214 EKNDA 218
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSI--NEKYLNFLQRRC 268
FFQ + + ++V L GAH +G+T + Y+G ++ NE YLN L
Sbjct: 159 FFQRLNMNDREVVALMGAHALGKTHLKRS-----GYEGPWGAANNVFTNEFYLNLLNENW 213
Query: 269 RWASEDA 275
+ DA
Sbjct: 214 KLEKNDA 220
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 31.6 bits (70), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 159 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 215
Query: 271 ASEDA 275
DA
Sbjct: 216 EKNDA 220
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 160 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 216
Query: 271 ASEDA 275
DA
Sbjct: 217 EKNDA 221
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 159 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 215
Query: 271 ASEDA 275
DA
Sbjct: 216 EKNDA 220
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 157 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 213
Query: 271 ASEDA 275
DA
Sbjct: 214 EKNDA 218
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 159 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 215
Query: 271 ASEDA 275
DA
Sbjct: 216 EKNDA 220
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 31.6 bits (70), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 159 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGAANNVFTNEFYLNLLNEDWKL 215
Query: 271 ASEDA 275
DA
Sbjct: 216 EKNDA 220
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 31.2 bits (69), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 159 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPFGAANNVFTNEFYLNLLNEDWKL 215
Query: 271 ASEDA 275
DA
Sbjct: 216 EKNDA 220
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 154 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPYGAANNVFTNEFYLNLLNEDWKL 210
Query: 271 ASEDA 275
DA
Sbjct: 211 EKNDA 215
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 183 GRKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDR 242
GR D + +P + + FFQ + + ++V L GAH +G+T +
Sbjct: 126 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRS--- 182
Query: 243 IYNYKGTGKPDPSI--NEKYLNFLQRRCRWASEDA 275
Y+G ++ NE YLN L + DA
Sbjct: 183 --GYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 215
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 183 GRKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDR 242
GR D + +P + + FFQ + + ++V L GAHT+G+T
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLKNS--- 185
Query: 243 IYNYKGTGKPDPSI--NEKYLNFLQRRCRWASEDA 275
Y+G ++ N YLN L + DA
Sbjct: 186 --GYEGPWDATNNVFDNSFYLNLLNEDWKLEKNDA 218
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 3/93 (3%)
Query: 183 GRKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDR 242
GR D + +P + + FFQ + + ++V L GAH +G+T +++
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKT---HLKNS 185
Query: 243 IYNYKGTGKPDPSINEKYLNFLQRRCRWASEDA 275
Y + NE YLN L + DA
Sbjct: 186 GYEGPWGAANNCFTNEFYLNLLNEDWKLEKNDA 218
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 7/95 (7%)
Query: 183 GRKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQVQDR 242
GR D + +P + + FFQ + + ++V L GAH +G+T +
Sbjct: 129 GRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLKRS--- 185
Query: 243 IYNYKGTGKPDPSI--NEKYLNFLQRRCRWASEDA 275
Y+G ++ NE YLN L + DA
Sbjct: 186 --GYEGPWGAANNVFTNEFYLNLLNEDWKLEKNDA 218
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSI--NEKYLNFLQRRC 268
FFQ + + ++V L GAH +G+T + Y+G ++ NE YLN L
Sbjct: 159 FFQRLNMNDREVVALMGAHALGKTHLKRS-----GYEGPWGAANNVFTNEFYLNLLNEDW 213
Query: 269 RWASEDA 275
+ DA
Sbjct: 214 KLEKNDA 220
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSI--NEKYLNFLQRRC 268
FFQ + + ++V L GAH +G+T + Y+G ++ NE YLN L
Sbjct: 156 FFQRLNMNDREVVALMGAHALGKTHLKRS-----GYEGPFGAANNVFTNEFYLNLLNEDW 210
Query: 269 RWASEDA 275
+ DA
Sbjct: 211 KLEKNDA 217
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSI--NEKYLNFLQRRC 268
FFQ + + ++V L GAH +G+T + Y+G ++ NE YLN L
Sbjct: 150 FFQRLNMNDREVVALMGAHALGKTHLKRS-----GYEGPFGAANNVFTNEFYLNLLNEDW 204
Query: 269 RWASEDA 275
+ DA
Sbjct: 205 KLEKNDA 211
>pdb|3QML|C Chain C, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
pdb|3QML|D Chain D, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
Length = 315
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 241 DRIYNYKGTGKPDPSINEKYLNFLQRRCR 269
D +YN K K D +IN+ +LN+L ++C+
Sbjct: 240 DTLYNLKKIFKSDITINKGFLNWLAQQCK 268
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 211 FFQSMGLEVSDLVILSGAHTIG 232
F ++MGL D+V LSG HTIG
Sbjct: 144 FGKAMGLTDQDIVALSGGHTIG 165
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 211 FFQSMGLEVSDLVILSGAHTIG 232
F ++MGL D+V LSG HTIG
Sbjct: 156 FGKAMGLTDQDIVALSGGHTIG 177
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 211 FFQSMGLEVSDLVILSGAHTIG 232
F ++MGL D+V LSG HTIG
Sbjct: 156 FGKAMGLTDQDIVALSGGHTIG 177
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 211 FFQSMGLEVSDLVILSGAHTIG 232
F ++MGL D+V LSG HTIG
Sbjct: 156 FGKAMGLTDQDIVALSGGHTIG 177
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 211 FFQSMGLEVSDLVILSGAHTIG 232
F ++MGL D+V LSG HTIG
Sbjct: 144 FGKAMGLSDQDIVALSGGHTIG 165
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 211 FFQSMGLEVSDLVILSGAHTIG 232
F ++MGL D+V LSG HTIG
Sbjct: 144 FGKAMGLTDQDIVALSGGHTIG 165
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 211 FFQSMGLEVSDLVILSGAHTIG 232
F ++MGL D+V LSG HTIG
Sbjct: 144 FGKAMGLTDQDIVALSGGHTIG 165
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 211 FFQSMGLEVSDLVILSGAHTIG 232
F ++MGL D+V LSG HTIG
Sbjct: 156 FGKAMGLTDQDIVALSGGHTIG 177
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 211 FFQSMGLEVSDLVILSGAHTIG 232
F ++MGL D+V LSG HTIG
Sbjct: 144 FGKAMGLTDQDIVALSGGHTIG 165
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 211 FFQSMGLEVSDLVILSGAHTIG 232
F ++MGL D+V LSG HTIG
Sbjct: 156 FGKAMGLTDQDIVALSGGHTIG 177
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 211 FFQSMGLEVSDLVILSGAHTIG 232
F ++MGL D+V LSG HTIG
Sbjct: 156 FGKAMGLTDQDIVALSGGHTIG 177
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 211 FFQSMGLEVSDLVILSGAHTIG 232
F ++MGL D+V LSG HTIG
Sbjct: 156 FGKAMGLTDQDIVALSGGHTIG 177
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
Query: 211 FFQSMGLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW 270
FFQ + + ++V L GAH +G+T +++ Y + NE YLN L +
Sbjct: 159 FFQRLNMNDREVVALMGAHALGKT---HLKNSGYEGPWGCANNVFTNEFYLNLLNEDWKL 215
Query: 271 ASEDA 275
DA
Sbjct: 216 EKNDA 220
>pdb|2GSE|A Chain A, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|B Chain B, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|C Chain C, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2GSE|D Chain D, Crystal Structure Of Human Dihydropyrimidinease-Like 2
pdb|2VM8|A Chain A, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|B Chain B, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|C Chain C, Human Crmp-2 Crystallised In The Presence Of Mg
pdb|2VM8|D Chain D, Human Crmp-2 Crystallised In The Presence Of Mg
Length = 501
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 48/102 (47%), Gaps = 18/102 (17%)
Query: 185 KDGRVSIGKEADIVPMGHDNVTTL--------LEF--FQSMGLEVSDLVILSGAHTIGRT 234
+ GR+++G +AD+V D+V T+ LE+ F+ M S LV++S +
Sbjct: 408 RKGRIAVGSDADLVIWDPDSVKTISAKTHNSSLEYNIFEGMECRGSPLVVISQGKIVLED 467
Query: 235 SCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRWASEDAE 276
V + G+G+ P + + +F+ +R + S AE
Sbjct: 468 GTLHVTE------GSGRYIP--RKPFPDFVYKRIKARSRLAE 501
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,697,479
Number of Sequences: 62578
Number of extensions: 365077
Number of successful extensions: 881
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 57
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 99
length of query: 363
length of database: 14,973,337
effective HSP length: 100
effective length of query: 263
effective length of database: 8,715,537
effective search space: 2292186231
effective search space used: 2292186231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)