Query 044134
Match_columns 363
No_of_seqs 186 out of 1455
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 11:47:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044134.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044134hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 2E-104 5E-109 773.1 26.5 299 58-359 18-324 (324)
2 cd00693 secretory_peroxidase H 100.0 5E-98 1E-102 725.2 24.3 292 64-358 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 3.5E-71 7.6E-76 520.1 10.6 226 83-322 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 1.6E-68 3.5E-73 514.5 19.5 230 81-356 15-257 (289)
5 cd00691 ascorbate_peroxidase A 100.0 2.1E-65 4.7E-70 486.7 18.5 225 79-345 12-252 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 3.7E-64 8E-69 477.1 19.0 229 68-344 4-248 (250)
7 cd00692 ligninase Ligninase an 100.0 8.3E-64 1.8E-68 489.5 20.8 237 79-361 16-289 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 2.6E-62 5.6E-67 464.1 19.8 219 80-344 17-248 (251)
9 cd00314 plant_peroxidase_like 100.0 1.9E-58 4E-63 438.6 16.9 222 82-340 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 1.1E-55 2.3E-60 439.4 18.8 255 80-349 44-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 2.8E-53 6.1E-58 445.5 19.6 264 70-349 45-408 (716)
12 PRK15061 catalase/hydroperoxid 100.0 6.5E-50 1.4E-54 418.3 19.2 264 70-349 47-414 (726)
13 cd08201 plant_peroxidase_like_ 100.0 2.6E-50 5.7E-55 382.5 11.5 245 42-340 1-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 8.5E-39 1.8E-43 307.4 17.1 219 85-342 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 1.1E-33 2.3E-38 298.0 16.8 218 82-342 429-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 3E-33 6.6E-38 293.2 17.2 218 85-342 442-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 3.8E-30 8.2E-35 259.7 14.6 246 82-342 71-416 (730)
18 COG0376 KatG Catalase (peroxid 99.4 6.2E-13 1.3E-17 135.7 12.0 214 85-342 452-725 (730)
19 PF11895 DUF3415: Domain of un 48.0 15 0.00032 29.7 2.2 17 327-343 3-19 (80)
20 PTZ00411 transaldolase-like pr 39.4 1.1E+02 0.0023 31.0 7.3 48 173-220 180-231 (333)
21 PF15284 PAGK: Phage-encoded v 26.0 79 0.0017 24.2 2.9 41 1-44 1-41 (61)
22 KOG0400 40S ribosomal protein 20.3 87 0.0019 27.7 2.5 33 203-235 31-64 (151)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=2.1e-104 Score=773.11 Aligned_cols=299 Identities=41% Similarity=0.721 Sum_probs=284.0
Q ss_pred ccccCCCCCccccccCCCChHHHHHHHHHHHHHHHhcCCchhhHHHHHhhcccccCCCcceecCCCcccccccCCCCCch
Q 044134 58 ILHSDEWPSSSYYHRRCPNKNVEKIINKKVKEWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNNDGSERRANVSKTLRG 137 (363)
Q Consensus 58 ~~~~~~~L~~~fY~~sCP~~~~e~iV~~~v~~~~~~d~~~aa~llRL~FHDcfv~GCDgSill~~~~~E~~~~~N~~Lrg 137 (363)
.+...++|+++||++|||+ +|+||++.|++.+.+||+++|++|||+||||||+||||||||++...|+++++|.+|||
T Consensus 18 ~~~~~~~L~~~fY~~sCP~--aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~~~Ek~a~~N~~l~G 95 (324)
T PLN03030 18 TLVQGQGTRVGFYSTTCPQ--AESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGSNTEKTALPNLLLRG 95 (324)
T ss_pred ccchhccCccchhhCcCCC--HHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCCcccccCCCCcCcch
Confidence 4445567999999999999 99999999999999999999999999999999999999999985337999999999999
Q ss_pred hHHHHHHHHHHHhhCCCCcCHHHHHHHhhHhHHhhcCCcceeecCCCCCCCCCCCcCCCCCCCCCCCHHHHHHHHHHCCC
Q 044134 138 FEVIDDIKAELEKECPKTVSCADILAAAARDATVLLGGEYWDVPLGRKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGL 217 (363)
Q Consensus 138 f~~Id~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl 217 (363)
|++|+.||++||++||++||||||||+||||||+++|||.|+|++||||+++|.+.++..||.|+.++++|++.|++|||
T Consensus 96 f~~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl 175 (324)
T PLN03030 96 YDVIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGL 175 (324)
T ss_pred HHHHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999877665599999999999999999999
Q ss_pred CcccceeeeccccccccccccccccccccCCCC-CCCCCCCHHHHHHHhccCCC---CCCCCCCCCCCCCccChHHHHHh
Q 044134 218 EVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTG-KPDPSINEKYLNFLQRRCRW---ASEDAELDAESPWKFDNMYYKNL 293 (363)
Q Consensus 218 s~~dlVaLsGaHTiG~ahc~~f~~Rl~~f~g~~-~~dP~~d~~~a~~L~~~Cp~---~~~~~~lD~~Tp~~FDN~Yy~nl 293 (363)
+.+|||+||||||||++||.+|.+|||||.+++ .+||+||++|+..||+.||. +++.++||+.||.+|||+||+||
T Consensus 176 ~~~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~nl 255 (324)
T PLN03030 176 NTQDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNGDGSRRIALDTGSSNRFDASFFSNL 255 (324)
T ss_pred CHHHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCCCCCccccCCCCCCcccccHHHHHH
Confidence 999999999999999999999999999999875 48999999999999999995 23468899999999999999999
Q ss_pred hcCCcCcchhhhhccCCCcHHHHHHHhcCC----cchHHHHHHHHHHHhhcCCCccCCCCcccccccccC
Q 044134 294 QNGLGLLPTDQLLLSDKRTEPIAKALASMP----SFLYGQIFGASMKKFGKVNVLSGDEGEIRTNCNFVN 359 (363)
Q Consensus 294 ~~~~glL~SD~~L~~d~~t~~~V~~yA~d~----~~~F~~~Fa~Am~Km~~lgv~tg~~GeIR~~C~~~N 359 (363)
+.++|+|+|||+|++|++|+++|++||.|+ +. |+++|++||+|||+|+|+||.+|||||+|+++|
T Consensus 256 l~~rGlL~SDq~L~~d~~T~~~V~~~A~~~~~~~~~-F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 256 KNGRGILESDQKLWTDASTRTFVQRFLGVRGLAGLN-FNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred HhcCCCcCCchHhhcCccHHHHHHHHhcccccchhh-hHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 999999999999999999999999999885 48 999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=5e-98 Score=725.16 Aligned_cols=292 Identities=50% Similarity=0.853 Sum_probs=281.9
Q ss_pred CCCccccccCCCChHHHHHHHHHHHHHHHhcCCchhhHHHHHhhcccccCCCcceecCC--Cc-ccccccCCCCCchhHH
Q 044134 64 WPSSSYYHRRCPNKNVEKIINKKVKEWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNN--DG-SERRANVSKTLRGFEV 140 (363)
Q Consensus 64 ~L~~~fY~~sCP~~~~e~iV~~~v~~~~~~d~~~aa~llRL~FHDcfv~GCDgSill~~--~~-~E~~~~~N~~Lrgf~~ 140 (363)
||+++||+++||+ +|+||+++|++.+.++++++|++|||+||||||+||||||||++ +. +|+++++|.+|+||++
T Consensus 1 ~L~~~~Y~~sCP~--~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~ 78 (298)
T cd00693 1 QLSVGFYSKSCPN--AESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDV 78 (298)
T ss_pred CCCcccccCCCCC--hHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHH
Confidence 5899999999999 99999999999999999999999999999999999999999997 34 8999999999999999
Q ss_pred HHHHHHHHHhhCCCCcCHHHHHHHhhHhHHhhcCCcceeecCCCCCCCCCCCcCCCCCCCCCCCHHHHHHHHHHCCCCcc
Q 044134 141 IDDIKAELEKECPKTVSCADILAAAARDATVLLGGEYWDVPLGRKDGRVSIGKEADIVPMGHDNVTTLLEFFQSMGLEVS 220 (363)
Q Consensus 141 Id~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gls~~ 220 (363)
|+.||++||+.||++||||||||||||+||+++|||.|+|++||+|+++|.+..+..||.|+.+++++++.|+++||+++
T Consensus 79 i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~ 158 (298)
T cd00693 79 IDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVT 158 (298)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999999999999999988776653399999999999999999999999
Q ss_pred cceeeeccccccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCC---CCCCCCCCCCCCCccChHHHHHhhcCC
Q 044134 221 DLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRW---ASEDAELDAESPWKFDNMYYKNLQNGL 297 (363)
Q Consensus 221 dlVaLsGaHTiG~ahc~~f~~Rl~~f~g~~~~dP~~d~~~a~~L~~~Cp~---~~~~~~lD~~Tp~~FDN~Yy~nl~~~~ 297 (363)
|||+|+||||||++||.+|.+|||||+|++.+||+||+.|+..|+..||+ +++.++||+.||.+|||+||+|++.++
T Consensus 159 d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~~~~~~~~lD~~Tp~~FDn~Yy~~l~~~~ 238 (298)
T cd00693 159 DLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGGDDDTLVPLDPGTPNTFDNSYYKNLLAGR 238 (298)
T ss_pred HheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCCCCCccccCCCCCCCccccHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999998 346789999999999999999999999
Q ss_pred cCcchhhhhccCCCcHHHHHHHhcCCcchHHHHHHHHHHHhhcCCCccCCCCccccccccc
Q 044134 298 GLLPTDQLLLSDKRTEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRTNCNFV 358 (363)
Q Consensus 298 glL~SD~~L~~d~~t~~~V~~yA~d~~~~F~~~Fa~Am~Km~~lgv~tg~~GeIR~~C~~~ 358 (363)
|+|+||++|+.|++|+++|++||.|++. |+++|++||+||++|+|+||.+||||++|+++
T Consensus 239 glL~SD~~L~~d~~t~~~V~~~A~d~~~-F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 239 GLLTSDQALLSDPRTRAIVNRYAANQDA-FFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred cCccCCHHhccCccHHHHHHHHhhCHHH-HHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 9999999999999999999999999999 99999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=3.5e-71 Score=520.08 Aligned_cols=226 Identities=51% Similarity=0.849 Sum_probs=209.1
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHhhcccc-cCCCcceecCCCcccccccCCCCCc-hhHHHHHHHHHHHhhCCCCcCHHH
Q 044134 83 INKKVKEWVDKDYKIAPSLLRLHYHDCAV-RGCDGSILLNNDGSERRANVSKTLR-GFEVIDDIKAELEKECPKTVSCAD 160 (363)
Q Consensus 83 V~~~v~~~~~~d~~~aa~llRL~FHDcfv-~GCDgSill~~~~~E~~~~~N~~Lr-gf~~Id~iK~~le~~cp~~VScAD 160 (363)
||++|++.+.++++++|++|||+|||||+ +|||||||+.. .|+++++|.+|+ ++++|+.||+++|++||++|||||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~~--~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS~AD 78 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLFS--AEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVSCAD 78 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGST--TGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-HHH
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceeccc--cccccccccCcceeeechhhHHhhhcccccCCCCHHH
Confidence 78999999999999999999999999999 99999999843 799999999997 999999999999999999999999
Q ss_pred HHHHhhHhHHhhcCCcceeecCCCCCCCCCCCcCCCC-CCCCCCCHHHHHHHHHHCCCCcccceeeeccccccccccccc
Q 044134 161 ILAAAARDATVLLGGEYWDVPLGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTIGRTSCAQV 239 (363)
Q Consensus 161 ilalAardAV~~~GGP~~~v~~GRrD~~~s~~~~~~~-LP~p~~~~~~l~~~F~~~Gls~~dlVaLsGaHTiG~ahc~~f 239 (363)
||+||||+||+.+|||.|+|++||+|++++...++ . ||.|+.++++|++.|+++||+++|||||+||||||++||.+|
T Consensus 79 iialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f 157 (230)
T PF00141_consen 79 IIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCSSF 157 (230)
T ss_dssp HHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGGCT
T ss_pred HHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceecccccccceeccc
Confidence 99999999999999999999999999999998776 5 999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCCCCCCCCHHHHHHHhccCCC-CCCCCCCCCCCCCccChHHHHHhhcCCcCcchhhhhccCCCcHHHHHH
Q 044134 240 QDRIYNYKGTGKPDPSINEKYLNFLQRRCRW-ASEDAELDAESPWKFDNMYYKNLQNGLGLLPTDQLLLSDKRTEPIAKA 318 (363)
Q Consensus 240 ~~Rl~~f~g~~~~dP~~d~~~a~~L~~~Cp~-~~~~~~lD~~Tp~~FDN~Yy~nl~~~~glL~SD~~L~~d~~t~~~V~~ 318 (363)
. ||| + .+||+||+.|+.. .|+. ++..+++| ||.+|||+||+++++++|+|+||++|++|++|+++|++
T Consensus 158 ~-rl~-~----~~dp~~d~~~~~~---~C~~~~~~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~~d~~t~~~V~~ 226 (230)
T PF00141_consen 158 S-RLY-F----PPDPTMDPGYAGQ---NCNSGGDNGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALLNDPETRPIVER 226 (230)
T ss_dssp G-GTS-C----SSGTTSTHHHHHH---SSSTSGCTCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHHHSTTHHHHHHH
T ss_pred c-ccc-c----cccccccccccee---ccCCCcccccccc--CCCcchhHHHHHHhcCCCcCHHHHHHhcCHHHHHHHHH
Confidence 9 999 4 4699999999988 9954 34478899 99999999999999999999999999999999999999
Q ss_pred HhcC
Q 044134 319 LASM 322 (363)
Q Consensus 319 yA~d 322 (363)
||+|
T Consensus 227 yA~d 230 (230)
T PF00141_consen 227 YAQD 230 (230)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 9976
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1.6e-68 Score=514.54 Aligned_cols=230 Identities=28% Similarity=0.435 Sum_probs=209.4
Q ss_pred HHHHHHHHHHHHhcCCchhhHHHHHhhccc-------ccCCCcceecCCCcccccccCCCCC-chhHHHHHHHHHHHhhC
Q 044134 81 KIINKKVKEWVDKDYKIAPSLLRLHYHDCA-------VRGCDGSILLNNDGSERRANVSKTL-RGFEVIDDIKAELEKEC 152 (363)
Q Consensus 81 ~iV~~~v~~~~~~d~~~aa~llRL~FHDcf-------v~GCDgSill~~~~~E~~~~~N~~L-rgf~~Id~iK~~le~~c 152 (363)
+.+++++++ +.++|.++|.+|||+||||| ++||||||++. +|+++++|.+| +||++|++||+++
T Consensus 15 ~~~~~~~~~-~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~---~E~~~~~N~gL~~g~~vid~iK~~~---- 86 (289)
T PLN02608 15 EKARRDLRA-LIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE---EEYSHGANNGLKIAIDLCEPVKAKH---- 86 (289)
T ss_pred HHHHHHHHH-HHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc---cccCCccccchHHHHHHHHHHHHHc----
Confidence 356667744 66799999999999999999 89999999997 69999999999 5999999999987
Q ss_pred CCCcCHHHHHHHhhHhHHhhcCCcceeecCCCCCCCCCCCcCCCC-CCCCCCCHHHHHHHHHHCCCCcccceeeeccccc
Q 044134 153 PKTVSCADILAAAARDATVLLGGEYWDVPLGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHTI 231 (363)
Q Consensus 153 p~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~~~~~~-LP~p~~~~~~l~~~F~~~Gls~~dlVaLsGaHTi 231 (363)
++|||||||+||||+||+++|||.|+|++||+|++++.+ ++ ||.|+.+++++++.|+++||+++|||+|+|||||
T Consensus 87 -~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHTi 162 (289)
T PLN02608 87 -PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPE---EGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHTL 162 (289)
T ss_pred -CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCc---cCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhcccccc
Confidence 489999999999999999999999999999999999863 34 9999999999999999999999999999999999
Q ss_pred cccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCCCCCccChHHHHHhhcC--CcC--cchhhhhc
Q 044134 232 GRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRWASEDAELDAESPWKFDNMYYKNLQNG--LGL--LPTDQLLL 307 (363)
Q Consensus 232 G~ahc~~f~~Rl~~f~g~~~~dP~~d~~~a~~L~~~Cp~~~~~~~lD~~Tp~~FDN~Yy~nl~~~--~gl--L~SD~~L~ 307 (363)
|++||. |+ +|.|+ ++ .||.+|||+||+|++.+ +|+ |+||++|+
T Consensus 163 G~ahc~----r~-g~~g~---------------------------~~-~Tp~~FDN~Yy~~ll~~~~~gll~L~SD~~L~ 209 (289)
T PLN02608 163 GRAHPE----RS-GFDGP---------------------------WT-KEPLKFDNSYFVELLKGESEGLLKLPTDKALL 209 (289)
T ss_pred cccccc----CC-CCCCC---------------------------CC-CCCCccChHHHHHHHcCCcCCccccccCHhhh
Confidence 999995 55 44321 12 69999999999999998 787 79999999
Q ss_pred cCCCcHHHHHHHhcCCcchHHHHHHHHHHHhhcCCCccCCCCccccccc
Q 044134 308 SDKRTEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRTNCN 356 (363)
Q Consensus 308 ~d~~t~~~V~~yA~d~~~~F~~~Fa~Am~Km~~lgv~tg~~GeIR~~C~ 356 (363)
+|++|+++|+.||.|++. |+++|++||+||++|+|+||++||+.+.-+
T Consensus 210 ~d~~T~~~V~~fA~~~~~-F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 210 EDPEFRPYVELYAKDEDA-FFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred cChhHHHHHHHHhhCHHH-HHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 999999999999999999 999999999999999999999999987543
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=2.1e-65 Score=486.74 Aligned_cols=225 Identities=27% Similarity=0.380 Sum_probs=204.6
Q ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHhhcccccCCCcceecCC-----Cc-ccccccCCCCC-chhHHHHHHHHHHHhh
Q 044134 79 VEKIINKKVKEWVDKDYKIAPSLLRLHYHDCAVRGCDGSILLNN-----DG-SERRANVSKTL-RGFEVIDDIKAELEKE 151 (363)
Q Consensus 79 ~e~iV~~~v~~~~~~d~~~aa~llRL~FHDcfv~GCDgSill~~-----~~-~E~~~~~N~~L-rgf~~Id~iK~~le~~ 151 (363)
.++||++.|++.++ +++++|.+|||+|||||+ ||+|+++++ .+ +|+++++|.+| +||++|++||+++
T Consensus 12 ~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~--- 85 (253)
T cd00691 12 DLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY--- 85 (253)
T ss_pred HHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc---
Confidence 58899999999999 999999999999999994 666665542 12 69999999999 8999999999886
Q ss_pred CCCCcCHHHHHHHhhHhHHhhcCCcceeecCCCCCCCCCCCcCCCC-CCCCCCCHHHHHHHHHHCCCCcccceeeecccc
Q 044134 152 CPKTVSCADILAAAARDATVLLGGEYWDVPLGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHT 230 (363)
Q Consensus 152 cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~~~~~~-LP~p~~~~~~l~~~F~~~Gls~~dlVaLsGaHT 230 (363)
| +||||||||||||+||+.+|||.|+|++||+|++++....+++ ||.|+.++++|++.|+++||+++|||+|+||||
T Consensus 86 -~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGaHT 163 (253)
T cd00691 86 -P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGAHT 163 (253)
T ss_pred -C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcccce
Confidence 4 8999999999999999999999999999999999998776766 999999999999999999999999999999999
Q ss_pred ccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCCCCCccChHHHHHhhcCCc--------Ccch
Q 044134 231 IGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRWASEDAELDAESPWKFDNMYYKNLQNGLG--------LLPT 302 (363)
Q Consensus 231 iG~ahc~~f~~Rl~~f~g~~~~dP~~d~~~a~~L~~~Cp~~~~~~~lD~~Tp~~FDN~Yy~nl~~~~g--------lL~S 302 (363)
||++||.. ++|.|+ |..||.+|||+||+||+.++| +|+|
T Consensus 164 iG~a~c~~-----~~~~g~----------------------------~~~tp~~FDn~Yy~~ll~~~g~~~~~~~~~L~s 210 (253)
T cd00691 164 LGRCHKER-----SGYDGP----------------------------WTKNPLKFDNSYFKELLEEDWKLPTPGLLMLPT 210 (253)
T ss_pred eecccccC-----CCCCCC----------------------------CCCCCCcccHHHHHHHhcCCCccCcCcceechh
Confidence 99999953 244321 116999999999999999999 9999
Q ss_pred hhhhccCCCcHHHHHHHhcCCcchHHHHHHHHHHHhhcCCCcc
Q 044134 303 DQLLLSDKRTEPIAKALASMPSFLYGQIFGASMKKFGKVNVLS 345 (363)
Q Consensus 303 D~~L~~d~~t~~~V~~yA~d~~~~F~~~Fa~Am~Km~~lgv~t 345 (363)
|++|+.|++|+++|+.||.|+++ |+++|++||+||++|+|..
T Consensus 211 D~~L~~d~~t~~~v~~~a~~~~~-F~~~Fa~Am~Km~~l~v~~ 252 (253)
T cd00691 211 DKALLEDPKFRPYVELYAKDQDA-FFKDYAEAHKKLSELGVPF 252 (253)
T ss_pred hHHHHcCccHHHHHHHHhhCHHH-HHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999 9999999999999999863
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=3.7e-64 Score=477.12 Aligned_cols=229 Identities=28% Similarity=0.453 Sum_probs=205.8
Q ss_pred cccccC--CCChHHHHHHHHHHHHHHHhcCCchhhHHHHHhh-----ccccc--CCCcceecCCCcccccccCCCCC-ch
Q 044134 68 SYYHRR--CPNKNVEKIINKKVKEWVDKDYKIAPSLLRLHYH-----DCAVR--GCDGSILLNNDGSERRANVSKTL-RG 137 (363)
Q Consensus 68 ~fY~~s--CP~~~~e~iV~~~v~~~~~~d~~~aa~llRL~FH-----Dcfv~--GCDgSill~~~~~E~~~~~N~~L-rg 137 (363)
+||... |+. +++.|+..+++.+ .+++++|.+|||+|| ||+++ ||||||..+ +|+++++|.+| +|
T Consensus 4 ~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~---~E~~~~~N~gl~~~ 77 (250)
T PLN02364 4 NYPTVSEDYKK--AVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFD---AEQAHGANSGIHIA 77 (250)
T ss_pred CCCCccHHHHH--HHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCcccccc---ccccCCCccCHHHH
Confidence 455533 667 8889999999988 689999999999999 88876 999999765 69999999999 89
Q ss_pred hHHHHHHHHHHHhhCCCCcCHHHHHHHhhHhHHhhcCCcceeecCCCCCCCCCCCcCCCC-CCCCCCCHHHHHHHHHH-C
Q 044134 138 FEVIDDIKAELEKECPKTVSCADILAAAARDATVLLGGEYWDVPLGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQS-M 215 (363)
Q Consensus 138 f~~Id~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~~~~~~-LP~p~~~~~~l~~~F~~-~ 215 (363)
|++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++.+ ++ ||.|+.++++|++.|++ +
T Consensus 78 ~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~lP~p~~~~~~l~~~F~~~~ 149 (250)
T PLN02364 78 LRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPP---EGRLPDATKGCDHLRDVFAKQM 149 (250)
T ss_pred HHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccc---cCCCCCCCcCHHHHHHHHHHhc
Confidence 99999999998 589999999999999999999999999999999999864 34 99999999999999997 5
Q ss_pred CCCcccceeeeccccccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCCCCCccChHHHHHhhc
Q 044134 216 GLEVSDLVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRWASEDAELDAESPWKFDNMYYKNLQN 295 (363)
Q Consensus 216 Gls~~dlVaLsGaHTiG~ahc~~f~~Rl~~f~g~~~~dP~~d~~~a~~L~~~Cp~~~~~~~lD~~Tp~~FDN~Yy~nl~~ 295 (363)
||+++|||+|+||||||++|| .|+ +|.|+ ++ .||.+|||+||++|+.
T Consensus 150 Gl~~~d~VaLsGaHTiG~~hc----~r~-~~~g~---------------------------~~-~tp~~fDn~Yy~~ll~ 196 (250)
T PLN02364 150 GLSDKDIVALSGAHTLGRCHK----DRS-GFEGA---------------------------WT-SNPLIFDNSYFKELLS 196 (250)
T ss_pred CCCHHHheeeecceeeccccC----CCC-CCCCC---------------------------CC-CCCCccchHHHHHHhc
Confidence 999999999999999999999 454 44321 12 6999999999999999
Q ss_pred C--CcCcc--hhhhhccCCCcHHHHHHHhcCCcchHHHHHHHHHHHhhcCCCc
Q 044134 296 G--LGLLP--TDQLLLSDKRTEPIAKALASMPSFLYGQIFGASMKKFGKVNVL 344 (363)
Q Consensus 296 ~--~glL~--SD~~L~~d~~t~~~V~~yA~d~~~~F~~~Fa~Am~Km~~lgv~ 344 (363)
+ +|+|. ||++|++|++|+.+|+.||.|++. |+++|++||+||++||+-
T Consensus 197 ~~~~gll~l~sD~~L~~d~~T~~~v~~~a~~~~~-F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 197 GEKEGLLQLVSDKALLDDPVFRPLVEKYAADEDA-FFADYAEAHMKLSELGFA 248 (250)
T ss_pred CCcCCCccccchHHHccCchHHHHHHHHhhCHHH-HHHHHHHHHHHHHccCCC
Confidence 9 89865 999999999999999999999999 999999999999999974
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=8.3e-64 Score=489.50 Aligned_cols=237 Identities=28% Similarity=0.328 Sum_probs=213.3
Q ss_pred HHHHHHHHHHHHHHhcC---CchhhHHHHHhhcccc------------cCCCcceecCCCcccccccCCCCCchhHHHHH
Q 044134 79 VEKIINKKVKEWVDKDY---KIAPSLLRLHYHDCAV------------RGCDGSILLNNDGSERRANVSKTLRGFEVIDD 143 (363)
Q Consensus 79 ~e~iV~~~v~~~~~~d~---~~aa~llRL~FHDcfv------------~GCDgSill~~~~~E~~~~~N~~Lrgf~~Id~ 143 (363)
+|..|+++|++.+..+. ..|+.+|||+||||++ +|||||||++.. .|+++++|.||+ ++|+.
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~-~E~~~~~N~gL~--~vvd~ 92 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD-IETAFHANIGLD--EIVEA 92 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc-ccccCCCCCCHH--HHHHH
Confidence 79999999999998554 4677899999999996 899999999732 599999999998 89999
Q ss_pred HHHHHHhhCCCCcCHHHHHHHhhHhHHhhc-CCcceeecCCCCCCCCCCCcCCCC-CCCCCCCHHHHHHHHHHCCCCccc
Q 044134 144 IKAELEKECPKTVSCADILAAAARDATVLL-GGEYWDVPLGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGLEVSD 221 (363)
Q Consensus 144 iK~~le~~cp~~VScADilalAardAV~~~-GGP~~~v~~GRrD~~~s~~~~~~~-LP~p~~~~~~l~~~F~~~Gls~~d 221 (363)
||..+|+.| ||||||||||||+||+.+ |||.|+|++||+|++++.+ ++ ||.|+.++++|++.|++|||+.+|
T Consensus 93 lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~---~g~LP~p~~sv~~l~~~F~~~Gf~~~E 166 (328)
T cd00692 93 LRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAP---DGLVPEPFDSVDKILARFADAGFSPDE 166 (328)
T ss_pred HHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 999999998 999999999999999965 9999999999999999864 34 999999999999999999999999
Q ss_pred ceeeeccccccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCCCCCccChHHHHHhh-cCCc--
Q 044134 222 LVILSGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRWASEDAELDAESPWKFDNMYYKNLQ-NGLG-- 298 (363)
Q Consensus 222 lVaLsGaHTiG~ahc~~f~~Rl~~f~g~~~~dP~~d~~~a~~L~~~Cp~~~~~~~lD~~Tp~~FDN~Yy~nl~-~~~g-- 298 (363)
||+|+||||||++|. +||+++ .+++| .||.+|||+||+|++ .+++
T Consensus 167 ~VaLsGAHTiG~a~~---------------~Dps~~----------------g~p~D-~TP~~FDn~Yf~~ll~~~~~~~ 214 (328)
T cd00692 167 LVALLAAHSVAAQDF---------------VDPSIA----------------GTPFD-STPGVFDTQFFIETLLKGTAFP 214 (328)
T ss_pred HhhhcccccccccCC---------------CCCCCC----------------CCCCC-CCcchhcHHHHHHHHHcCCCCC
Confidence 999999999999981 367663 25688 699999999999987 5555
Q ss_pred -----------------CcchhhhhccCCCcHHHHHHHhcCCcchHHHHHHHHHHHhhcCCCccCCCCcccccccccCCC
Q 044134 299 -----------------LLPTDQLLLSDKRTEPIAKALASMPSFLYGQIFGASMKKFGKVNVLSGDEGEIRTNCNFVNSH 361 (363)
Q Consensus 299 -----------------lL~SD~~L~~d~~t~~~V~~yA~d~~~~F~~~Fa~Am~Km~~lgv~tg~~GeIR~~C~~~N~~ 361 (363)
+|+||++|+.|++|+.+|++||.||++ |+++|++||+||++|||. ...+.+|+.|+|.
T Consensus 215 g~~~~~~e~~~~~~g~~~L~SD~~L~~D~~T~~~v~~fa~dq~~-f~~~Fa~Am~KLs~lgv~----~~~l~dcs~v~p~ 289 (328)
T cd00692 215 GSGGNQGEVESPLPGEFRLQSDFLLARDPRTACEWQSFVNNQAK-MNAAFAAAMLKLSLLGQD----NISLTDCSDVIPP 289 (328)
T ss_pred CccccccccccCccccccccchHHHhcCCcHHHHHHHHhcCHHH-HHHHHHHHHHHHHcCCCC----cchhccCcccCCC
Confidence 499999999999999999999999999 999999999999999986 3378899999965
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=2.6e-62 Score=464.12 Aligned_cols=219 Identities=28% Similarity=0.417 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHhhcccc-------cCCCcceecCCCcccccccCCCCCc-hhHHHHHHHHHHHhh
Q 044134 80 EKIINKKVKEWVDKDYKIAPSLLRLHYHDCAV-------RGCDGSILLNNDGSERRANVSKTLR-GFEVIDDIKAELEKE 151 (363)
Q Consensus 80 e~iV~~~v~~~~~~d~~~aa~llRL~FHDcfv-------~GCDgSill~~~~~E~~~~~N~~Lr-gf~~Id~iK~~le~~ 151 (363)
.+.++..+.+.+. +...+|.+|||+||||.+ |||||||++. .|+++++|.||+ ++++|++||+++
T Consensus 17 ~~~~~~~~~~~~~-~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~---~E~~~~~N~gL~~~~~~i~~iK~~~--- 89 (251)
T PLN02879 17 VQRCKRKLRGLIA-EKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP---QELAHDANNGLDIAVRLLDPIKELF--- 89 (251)
T ss_pred HHHHHHHHHHHHh-CCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh---hhccCCCcCChHHHHHHHHHHHHHc---
Confidence 3445777777764 579999999999999974 8999999875 699999999997 999999999998
Q ss_pred CCCCcCHHHHHHHhhHhHHhhcCCcceeecCCCCCCCCCCCcCCCC-CCCCCCCHHHHHHHHHHCCCCcccceeeecccc
Q 044134 152 CPKTVSCADILAAAARDATVLLGGEYWDVPLGRKDGRVSIGKEADI-VPMGHDNVTTLLEFFQSMGLEVSDLVILSGAHT 230 (363)
Q Consensus 152 cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~~~~~~-LP~p~~~~~~l~~~F~~~Gls~~dlVaLsGaHT 230 (363)
++|||||||+||||+||+.+|||.|+|++||+|++++.+ ++ ||.|+.++++|++.|++|||+++||||||||||
T Consensus 90 --~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~---~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHT 164 (251)
T PLN02879 90 --PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPP---EGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHT 164 (251)
T ss_pred --CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeecccc
Confidence 589999999999999999999999999999999998854 44 999999999999999999999999999999999
Q ss_pred ccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCCCCCccChHHHHHhhcC--CcC--cchhhhh
Q 044134 231 IGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRWASEDAELDAESPWKFDNMYYKNLQNG--LGL--LPTDQLL 306 (363)
Q Consensus 231 iG~ahc~~f~~Rl~~f~g~~~~dP~~d~~~a~~L~~~Cp~~~~~~~lD~~Tp~~FDN~Yy~nl~~~--~gl--L~SD~~L 306 (363)
||++||. | ++|.|. +| .||.+|||+||++|+.+ +|+ |+||++|
T Consensus 165 iG~ah~~----r-~g~~g~---------------------------~d-~tp~~FDN~Yy~~ll~~~~~gll~L~SD~aL 211 (251)
T PLN02879 165 LGRCHKE----R-SGFEGA---------------------------WT-PNPLIFDNSYFKEILSGEKEGLLQLPTDKAL 211 (251)
T ss_pred ccccccc----c-ccCCCC---------------------------CC-CCccceeHHHHHHHHcCCcCCCccchhhHHH
Confidence 9999995 4 444331 23 69999999999999999 887 6899999
Q ss_pred ccCCCcHHHHHHHhcCCcchHHHHHHHHHHHhhcCCCc
Q 044134 307 LSDKRTEPIAKALASMPSFLYGQIFGASMKKFGKVNVL 344 (363)
Q Consensus 307 ~~d~~t~~~V~~yA~d~~~~F~~~Fa~Am~Km~~lgv~ 344 (363)
+.|++|+++|++||.||++ |+++|++||+||++||+.
T Consensus 212 ~~D~~t~~~V~~~A~d~~~-F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 212 LDDPLFLPFVEKYAADEDA-FFEDYTEAHLKLSELGFA 248 (251)
T ss_pred hcCCcHHHHHHHHhhCHHH-HHHHHHHHHHHHHccCCC
Confidence 9999999999999999999 999999999999999975
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.9e-58 Score=438.57 Aligned_cols=222 Identities=32% Similarity=0.431 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHhcCCchhhHHHHHhhccccc--------CCCcceecCCCcccccccCCCCC-chhHHHHHHHHHHHhhC
Q 044134 82 IINKKVKEWVDKDYKIAPSLLRLHYHDCAVR--------GCDGSILLNNDGSERRANVSKTL-RGFEVIDDIKAELEKEC 152 (363)
Q Consensus 82 iV~~~v~~~~~~d~~~aa~llRL~FHDcfv~--------GCDgSill~~~~~E~~~~~N~~L-rgf~~Id~iK~~le~~c 152 (363)
.|++.|++.+.+++++++++|||+||||++. ||||||+++ +|+++++|.+| +++++|+.||.++|+
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~---~e~~~~~N~~l~~~~~~l~~ik~~~~~-- 76 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE---PELDRPENGGLDKALRALEPIKSAYDG-- 76 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc---ccccCcccccHHHHHHHHHHHHHHcCC--
Confidence 5888999999999999999999999999996 999999998 59999999997 899999999999998
Q ss_pred CCCcCHHHHHHHhhHhHHhhc--CCcceeecCCCCCCCCCC--CcCCCC-CCCCCCCHHHHHHHHHHCCCCcccceeee-
Q 044134 153 PKTVSCADILAAAARDATVLL--GGEYWDVPLGRKDGRVSI--GKEADI-VPMGHDNVTTLLEFFQSMGLEVSDLVILS- 226 (363)
Q Consensus 153 p~~VScADilalAardAV~~~--GGP~~~v~~GRrD~~~s~--~~~~~~-LP~p~~~~~~l~~~F~~~Gls~~dlVaLs- 226 (363)
|++|||||||++||++||+.+ |||.|+|++||+|++.+. ...+.+ +|.|..+++++++.|.++||+++|||||+
T Consensus 77 ~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~ 156 (255)
T cd00314 77 GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSA 156 (255)
T ss_pred CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhcc
Confidence 899999999999999999999 999999999999999774 233444 88888999999999999999999999999
Q ss_pred ccccc-cccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCCCCCccChHHHHHhhcCC--------
Q 044134 227 GAHTI-GRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRWASEDAELDAESPWKFDNMYYKNLQNGL-------- 297 (363)
Q Consensus 227 GaHTi-G~ahc~~f~~Rl~~f~g~~~~dP~~d~~~a~~L~~~Cp~~~~~~~lD~~Tp~~FDN~Yy~nl~~~~-------- 297 (363)
||||| |++||..|..|+. .+|+.||.+|||+||++++.++
T Consensus 157 GaHti~G~~~~~~~~~~~~-------------------------------~~~~~tp~~fDN~yy~~l~~~~~~~~~~~~ 205 (255)
T cd00314 157 GAHTLGGKNHGDLLNYEGS-------------------------------GLWTSTPFTFDNAYFKNLLDMNWEWRVGSP 205 (255)
T ss_pred CCeeccCcccCCCCCcccC-------------------------------CCCCCCCCccchHHHHHHhcCCcccccCCc
Confidence 99999 9999998877751 1344899999999999999998
Q ss_pred --------cCcchhhhhccCCCcHHHHHHHhcCCcchHHHHHHHHHHHhhc
Q 044134 298 --------GLLPTDQLLLSDKRTEPIAKALASMPSFLYGQIFGASMKKFGK 340 (363)
Q Consensus 298 --------glL~SD~~L~~d~~t~~~V~~yA~d~~~~F~~~Fa~Am~Km~~ 340 (363)
++|+||++|+.|++|+.+|+.||.|++. |+++|++||+||++
T Consensus 206 ~~~~~~~~~~l~sD~~L~~d~~t~~~v~~ya~~~~~-f~~~Fa~a~~Km~~ 255 (255)
T cd00314 206 DPDGVKGPGLLPSDYALLSDSETRALVERYASDQEK-FFEDFAKAWIKMVN 255 (255)
T ss_pred cCCCcccCCCchhhHHHhcCHhHHHHHHHHHhCHHH-HHHHHHHHHHHHcC
Confidence 8999999999999999999999999999 99999999999984
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.1e-55 Score=439.42 Aligned_cols=255 Identities=22% Similarity=0.259 Sum_probs=228.0
Q ss_pred HHHHHHHHHHHHHhc--------CCchhhHHHHHhhcccc-------cCCC-cceecCCCcccccccCCCCC-chhHHHH
Q 044134 80 EKIINKKVKEWVDKD--------YKIAPSLLRLHYHDCAV-------RGCD-GSILLNNDGSERRANVSKTL-RGFEVID 142 (363)
Q Consensus 80 e~iV~~~v~~~~~~d--------~~~aa~llRL~FHDcfv-------~GCD-gSill~~~~~E~~~~~N~~L-rgf~~Id 142 (363)
.+.|+++|++.+... ...+|.+|||+|||+.+ ||++ |+|.+. +|++++.|.+| +++++++
T Consensus 44 ~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~---pe~~~~~N~gL~~a~~~L~ 120 (409)
T cd00649 44 LEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA---PLNSWPDNVNLDKARRLLW 120 (409)
T ss_pred HHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc---cccCcHhhhhHHHHHHHHH
Confidence 368899999998764 47999999999999986 8997 799887 69999999999 5889999
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHhhHhHHhhcCCcceeecCCCCCCCCCCC------------------------------
Q 044134 143 DIKAELEKECPKTVSCADILAAAARDATVLLGGEYWDVPLGRKDGRVSIG------------------------------ 192 (363)
Q Consensus 143 ~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~------------------------------ 192 (363)
+||+++ |..||+||+|+||+.+|||.+|||.|++.+||.|...+..
T Consensus 121 pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~ 196 (409)
T cd00649 121 PIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQ 196 (409)
T ss_pred HHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhh
Confidence 999987 3479999999999999999999999999999999976432
Q ss_pred --------cCCCCCCCCCCCHHHHHHHHHHCCCCcccceee-eccccccccccccccccccccCCCCCCCCCCCHHHHHH
Q 044134 193 --------KEADIVPMGHDNVTTLLEFFQSMGLEVSDLVIL-SGAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNF 263 (363)
Q Consensus 193 --------~~~~~LP~p~~~~~~l~~~F~~~Gls~~dlVaL-sGaHTiG~ahc~~f~~Rl~~f~g~~~~dP~~d~~~a~~ 263 (363)
+++.+||+|..++.+|++.|.+|||+++||||| +||||||++||..|.+||. +||.+++.|+..
T Consensus 197 mgliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg-------~dP~~~~~~~~g 269 (409)
T cd00649 197 MGLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG-------PEPEAAPIEQQG 269 (409)
T ss_pred ccccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC-------CCCCcCHHHHHh
Confidence 233349999999999999999999999999999 5999999999999999983 599999999999
Q ss_pred Hh--ccCCC----CCCCCCCC---CCCCCccChHHHHHhhc------------------------------------CCc
Q 044134 264 LQ--RRCRW----ASEDAELD---AESPWKFDNMYYKNLQN------------------------------------GLG 298 (363)
Q Consensus 264 L~--~~Cp~----~~~~~~lD---~~Tp~~FDN~Yy~nl~~------------------------------------~~g 298 (363)
|+ +.||. ++....+| +.||++|||+||++|+. ++|
T Consensus 270 Lgw~~~Cp~g~g~~t~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~~~g 349 (409)
T cd00649 270 LGWKNSYGTGKGKDTITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKHAPM 349 (409)
T ss_pred hcccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCccccccccCcc
Confidence 95 99996 12355788 57999999999999998 569
Q ss_pred CcchhhhhccCCCcHHHHHHHhcCCcchHHHHHHHHHHHh--hcCCCccCCCC
Q 044134 299 LLPTDQLLLSDKRTEPIAKALASMPSFLYGQIFGASMKKF--GKVNVLSGDEG 349 (363)
Q Consensus 299 lL~SD~~L~~d~~t~~~V~~yA~d~~~~F~~~Fa~Am~Km--~~lgv~tg~~G 349 (363)
||+||++|+.|++|+++|++||.|++. ||++|++||+|| +.+||++-..|
T Consensus 350 mL~SD~aL~~Dp~tr~iV~~yA~d~~~-Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 350 MLTTDLALRFDPEYEKISRRFLENPDE-FADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred cchhhHhhhcCccHHHHHHHHhcCHHH-HHHHHHHHHHHHccccCCchhhhcC
Confidence 999999999999999999999999999 999999999999 68999987665
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=2.8e-53 Score=445.53 Aligned_cols=264 Identities=20% Similarity=0.239 Sum_probs=227.7
Q ss_pred cccCCCChHHHHHHHHHHHHHHHhc--------CCchhhHHHHHhhcccc-------cCCC-cceecCCCcccccccCCC
Q 044134 70 YHRRCPNKNVEKIINKKVKEWVDKD--------YKIAPSLLRLHYHDCAV-------RGCD-GSILLNNDGSERRANVSK 133 (363)
Q Consensus 70 Y~~sCP~~~~e~iV~~~v~~~~~~d--------~~~aa~llRL~FHDcfv-------~GCD-gSill~~~~~E~~~~~N~ 133 (363)
|.+.+-.-. .+.|+++|++.+... ...+|.+|||+||++.+ |||+ |+|.+. +|++++.|.
T Consensus 45 y~~~~~~ld-~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~---P~~sw~~N~ 120 (716)
T TIGR00198 45 YAEEFQQLD-LAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA---PLNSWPDNV 120 (716)
T ss_pred HHHHhhhcc-HHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc---cccCchhhh
Confidence 455443321 346899999999864 47999999999999986 8885 799877 699999999
Q ss_pred CC-chhHHHHHHHHHHHhhCCCCcCHHHHHHHhhHhHHhhcCCcceeecCCCCCCCCCC---------------------
Q 044134 134 TL-RGFEVIDDIKAELEKECPKTVSCADILAAAARDATVLLGGEYWDVPLGRKDGRVSI--------------------- 191 (363)
Q Consensus 134 ~L-rgf~~Id~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~--------------------- 191 (363)
+| +++.++++||++ ||++|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 121 ~Ldka~~lL~pIk~k----yp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~ 196 (716)
T TIGR00198 121 NLDKARRLLWPIKKK----YGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRES 196 (716)
T ss_pred hHHHHHHHHHHHHHH----CCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhcccccccc
Confidence 99 588999999874 8999999999999999999999999999999999995332
Q ss_pred ----------------CcCCCCCCCCCCCHHHHHHHHHHCCCCcccceeee-ccccccccccccccccccccCCCCCCCC
Q 044134 192 ----------------GKEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILS-GAHTIGRTSCAQVQDRIYNYKGTGKPDP 254 (363)
Q Consensus 192 ----------------~~~~~~LP~p~~~~~~l~~~F~~~Gls~~dlVaLs-GaHTiG~ahc~~f~~Rl~~f~g~~~~dP 254 (363)
+..+.++|+|..++++|++.|.+||||++|||||+ ||||||++||.+|.+|| ++||
T Consensus 197 l~~p~a~~~~Gliyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl-------g~dP 269 (716)
T TIGR00198 197 LENPLAATEMGLIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI-------GPDP 269 (716)
T ss_pred ccccchhhhccccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-------CCCC
Confidence 12233499999999999999999999999999996 99999999999999998 2799
Q ss_pred CCCHHHHHHHhccCCC------CCCCCCCC---CCCCCccChHHHHHhhcC-----------------------------
Q 044134 255 SINEKYLNFLQRRCRW------ASEDAELD---AESPWKFDNMYYKNLQNG----------------------------- 296 (363)
Q Consensus 255 ~~d~~~a~~L~~~Cp~------~~~~~~lD---~~Tp~~FDN~Yy~nl~~~----------------------------- 296 (363)
++++.|++.|+.+||. ++..+.+| +.||++|||+||+||+.+
T Consensus 270 ~~~~~~~~gLg~~c~~~~g~g~dt~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~ 349 (716)
T TIGR00198 270 EGAPIEEQGLGWHNQYGKGVGRDTMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDP 349 (716)
T ss_pred CcCHHHHHHhcccCCCCCCCCCCcccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeeccccccccccccc
Confidence 9999999999999984 12256787 579999999999999975
Q ss_pred -----CcCcchhhhhccCCCcHHHHHHHhcCCcchHHHHHHHHHHHhh--cCCCccCCCC
Q 044134 297 -----LGLLPTDQLLLSDKRTEPIAKALASMPSFLYGQIFGASMKKFG--KVNVLSGDEG 349 (363)
Q Consensus 297 -----~glL~SD~~L~~d~~t~~~V~~yA~d~~~~F~~~Fa~Am~Km~--~lgv~tg~~G 349 (363)
+++|+||++|..|++++++|+.||.|++. |+++|++||+||+ .+|++.-.-|
T Consensus 350 ~~~~~~~mL~SDlaL~~Dp~~r~iVe~yA~d~~~-F~~dFA~Aw~KL~~~d~gp~~~y~g 408 (716)
T TIGR00198 350 NKKHNPIMLDADLALRFDPEFRKISRRFLREPDY-FAEAFAKAWFKLTHRDMGPKSRYIG 408 (716)
T ss_pred ccccccCccchhHHhccCccHHHHHHHHhcCHHH-HHHHHHHHHHHHcccccCchhhhcC
Confidence 68999999999999999999999999999 9999999999999 4666544333
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=6.5e-50 Score=418.27 Aligned_cols=264 Identities=20% Similarity=0.257 Sum_probs=228.2
Q ss_pred cccCCCChHHHHHHHHHHHHHHHhc--------CCchhhHHHHHhhcccc-------cCCC-cceecCCCcccccccCCC
Q 044134 70 YHRRCPNKNVEKIINKKVKEWVDKD--------YKIAPSLLRLHYHDCAV-------RGCD-GSILLNNDGSERRANVSK 133 (363)
Q Consensus 70 Y~~sCP~~~~e~iV~~~v~~~~~~d--------~~~aa~llRL~FHDcfv-------~GCD-gSill~~~~~E~~~~~N~ 133 (363)
|.+.+-.-. .+.|+++|++.+... ...+|.+|||+||++.+ |||+ |+|.+. +|++++.|.
T Consensus 47 y~~~~~~ld-~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~---pe~~w~~N~ 122 (726)
T PRK15061 47 YAEEFKKLD-LEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA---PLNSWPDNV 122 (726)
T ss_pred HHHHhchhh-HHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc---ccccchhhh
Confidence 455454422 457999999998764 47999999999999986 8997 799877 699999999
Q ss_pred CC-chhHHHHHHHHHHHhhCCCCcCHHHHHHHhhHhHHhhcCCcceeecCCCCCCCCCCC--------------------
Q 044134 134 TL-RGFEVIDDIKAELEKECPKTVSCADILAAAARDATVLLGGEYWDVPLGRKDGRVSIG-------------------- 192 (363)
Q Consensus 134 ~L-rgf~~Id~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~-------------------- 192 (363)
+| +++.++++||+++ |..||+||+|+||+..|||.+|||.|++.+||.|...+..
T Consensus 123 gL~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~ 198 (726)
T PRK15061 123 NLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGE 198 (726)
T ss_pred hHHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccc
Confidence 99 5889999999987 3579999999999999999999999999999999865332
Q ss_pred -------------------cCCCCCCCCCCCHHHHHHHHHHCCCCcccceeee-ccccccccccccccccccccCCCCCC
Q 044134 193 -------------------KEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILS-GAHTIGRTSCAQVQDRIYNYKGTGKP 252 (363)
Q Consensus 193 -------------------~~~~~LP~p~~~~~~l~~~F~~~Gls~~dlVaLs-GaHTiG~ahc~~f~~Rl~~f~g~~~~ 252 (363)
+++.++|+|..++.+|++.|.+|||+++|||||+ ||||||++||..|.+|| .+
T Consensus 199 ~~l~~pl~a~~mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl-------gp 271 (726)
T PRK15061 199 RDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV-------GP 271 (726)
T ss_pred cccccchhhhhccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc-------CC
Confidence 2233489999999999999999999999999995 99999999999999998 26
Q ss_pred CCCCCHHHHHHH--hccCCC----CCCCCCCC---CCCCCccChHHHHHhhcC---------------------------
Q 044134 253 DPSINEKYLNFL--QRRCRW----ASEDAELD---AESPWKFDNMYYKNLQNG--------------------------- 296 (363)
Q Consensus 253 dP~~d~~~a~~L--~~~Cp~----~~~~~~lD---~~Tp~~FDN~Yy~nl~~~--------------------------- 296 (363)
||.+++.+++.| ++.||. ++....+| ..||++|||+||++|+.+
T Consensus 272 dP~~a~~~~qgLgw~~~c~~g~g~dt~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd 351 (726)
T PRK15061 272 EPEAAPIEEQGLGWKNSYGSGKGADTITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPD 351 (726)
T ss_pred CCCcCHHHHHhccccccCCCCCCCCCccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCc
Confidence 999999999998 499996 23356688 579999999999999985
Q ss_pred ---------CcCcchhhhhccCCCcHHHHHHHhcCCcchHHHHHHHHHHHhhc--CCCccCCCC
Q 044134 297 ---------LGLLPTDQLLLSDKRTEPIAKALASMPSFLYGQIFGASMKKFGK--VNVLSGDEG 349 (363)
Q Consensus 297 ---------~glL~SD~~L~~d~~t~~~V~~yA~d~~~~F~~~Fa~Am~Km~~--lgv~tg~~G 349 (363)
.+||+||++|..||+++++|++||.|+++ |+++|++||+||++ +|+++-.-|
T Consensus 352 ~~~~~~~~~~~MLtSD~AL~~DP~~r~iV~~fA~d~~~-F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 352 AHDPSKKHAPTMLTTDLALRFDPEYEKISRRFLENPEE-FADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred ccccccccCcccccccHHhhcCCcHHHHHHHHhcCHHH-HHHHHHHHHHHHcccCCCchhhhcC
Confidence 58999999999999999999999999999 99999999999954 777654444
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=2.6e-50 Score=382.46 Aligned_cols=245 Identities=22% Similarity=0.241 Sum_probs=193.5
Q ss_pred ccccccccccccccccccccCCCCCccccccCCCChHHHHHHHHHHHHHHHhcCCchhhHHHHHhhccc-------ccCC
Q 044134 42 LPVGDIGLDDSFASSEILHSDEWPSSSYYHRRCPNKNVEKIINKKVKEWVDKDYKIAPSLLRLHYHDCA-------VRGC 114 (363)
Q Consensus 42 ~~~~~~~l~~~~~~~~~~~~~~~L~~~fY~~sCP~~~~e~iV~~~v~~~~~~d~~~aa~llRL~FHDcf-------v~GC 114 (363)
||..+..|++ ++.. +.+||...-- +.|...-......++++|+++|||+||||| ++||
T Consensus 1 wp~~~d~le~------i~~~----~~g~~~~~f~-----~~v~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGc 65 (264)
T cd08201 1 WPSQIDELED------ILYL----QSGYSARGFV-----AGVTPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGL 65 (264)
T ss_pred CCChHHHHHH------HHHh----cccceecccc-----cccccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCC
Confidence 6777777775 4443 4555554221 123333333445789999999999999999 8999
Q ss_pred CcceecCCCccccc-ccCCCCCchhHHHHHHHHHHHhhCCCCcCHHHHHHHhhHhHHhhcCCcceeecCCCCCCCCCCCc
Q 044134 115 DGSILLNNDGSERR-ANVSKTLRGFEVIDDIKAELEKECPKTVSCADILAAAARDATVLLGGEYWDVPLGRKDGRVSIGK 193 (363)
Q Consensus 115 DgSill~~~~~E~~-~~~N~~Lrgf~~Id~iK~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~~ 193 (363)
||||+++...+|+. .+.|.+|++|+.|+.+ +||||||||||||+||+.||||.|+|++||+|++++.+.
T Consensus 66 DgSIlle~~~~En~G~~~n~~l~~~~~i~~~----------~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~ 135 (264)
T cd08201 66 DASIQYELDRPENIGSGFNTTLNFFVNFYSP----------RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA 135 (264)
T ss_pred CcceeecCCChhhccCchhhccccceeeccC----------ccCHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc
Confidence 99999974226776 4556678888877543 699999999999999999999999999999999988754
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCcccceeeec-cccccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCC
Q 044134 194 EADIVPMGHDNVTTLLEFFQSMGLEVSDLVILSG-AHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRWAS 272 (363)
Q Consensus 194 ~~~~LP~p~~~~~~l~~~F~~~Gls~~dlVaLsG-aHTiG~ahc~~f~~Rl~~f~g~~~~dP~~d~~~a~~L~~~Cp~~~ 272 (363)
+||.|+.++++|++.|++|||+++|||+||| |||||++||..|.+++-. ++. .+
T Consensus 136 ---glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~ahc~~f~~~~~~--------g~~--------------~~ 190 (264)
T cd08201 136 ---GVPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGVHSEDFPEIVPP--------GSV--------------PD 190 (264)
T ss_pred ---cCCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeecccccchhhcCC--------ccc--------------cC
Confidence 4999999999999999999999999999996 999999999998877521 000 11
Q ss_pred CCCCCCCCCCCccChHHHHHhhcCC----------cCcchhhhhccCCCcHHHHHHHhcCCcchHHHHHHHHHHHhhc
Q 044134 273 EDAELDAESPWKFDNMYYKNLQNGL----------GLLPTDQLLLSDKRTEPIAKALASMPSFLYGQIFGASMKKFGK 340 (363)
Q Consensus 273 ~~~~lD~~Tp~~FDN~Yy~nl~~~~----------glL~SD~~L~~d~~t~~~V~~yA~d~~~~F~~~Fa~Am~Km~~ 340 (363)
...++| .||.+|||+||.+++.+. -.+.||..+++...-. .++.+| +++. |.+..+..+.||.+
T Consensus 191 ~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~~~~~~sd~r~f~~d~n~-t~~~l~-~~~~-f~~~c~~~~~~mi~ 264 (264)
T cd08201 191 TVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGPNNTTNSDLRIFSSDGNV-TMNELA-SPDT-FQKTCADILQRMID 264 (264)
T ss_pred CCCCCC-CCccccchHHHHHHhcCCCCCceeecCCCCccchhhheecCccH-HHHHhc-ChHH-HHHHHHHHHHHHhC
Confidence 355778 799999999999999874 2468999999866554 567787 6888 99999999999964
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=8.5e-39 Score=307.38 Aligned_cols=219 Identities=18% Similarity=0.243 Sum_probs=180.4
Q ss_pred HHHHHHHHhcCCchhhHHHHHhhcccc-------cCCCcc-eecCCCcccccccCCCC--C-chhHHHHHHHHHHHhh-C
Q 044134 85 KKVKEWVDKDYKIAPSLLRLHYHDCAV-------RGCDGS-ILLNNDGSERRANVSKT--L-RGFEVIDDIKAELEKE-C 152 (363)
Q Consensus 85 ~~v~~~~~~d~~~aa~llRL~FHDcfv-------~GCDgS-ill~~~~~E~~~~~N~~--L-rgf~~Id~iK~~le~~-c 152 (363)
+.+++.+....-.++.||||+||++.+ |||+|+ |.|. +|++++.|.+ | +.+.++++||+++... -
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~---pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~ 93 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA---PQKDWEVNEPEELAKVLAVLEGIQKEFNESQS 93 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc---cccCcCccCcHHHHHHHHHHHHHHHHhccccc
Confidence 577777887788999999999999986 899998 8777 6999999998 8 5889999999998422 1
Q ss_pred CC-CcCHHHHHHHhhHhHHhhcCC-----cceeecCCCCCCCCCCCcCC--CC-CCCCC------------CCHHHHHHH
Q 044134 153 PK-TVSCADILAAAARDATVLLGG-----EYWDVPLGRKDGRVSIGKEA--DI-VPMGH------------DNVTTLLEF 211 (363)
Q Consensus 153 p~-~VScADilalAardAV~~~GG-----P~~~v~~GRrD~~~s~~~~~--~~-LP~p~------------~~~~~l~~~ 211 (363)
++ .||.||+|+||+..|||.+|| |.+++.+||.|.+.+..... .. +|.+. ...++|++.
T Consensus 94 ~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~ 173 (297)
T cd08200 94 GGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDK 173 (297)
T ss_pred CCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHHH
Confidence 22 699999999999999999999 99999999999987643211 11 34332 234789999
Q ss_pred HHHCCCCcccceeeeccc-cccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCCCCCccChHHH
Q 044134 212 FQSMGLEVSDLVILSGAH-TIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRWASEDAELDAESPWKFDNMYY 290 (363)
Q Consensus 212 F~~~Gls~~dlVaLsGaH-TiG~ahc~~f~~Rl~~f~g~~~~dP~~d~~~a~~L~~~Cp~~~~~~~lD~~Tp~~FDN~Yy 290 (363)
|.++|||++|||||+||| ++|..|..+ +.| ||+ .+|.+|||.||
T Consensus 174 f~rlglsd~EmvaL~Gg~r~lG~~~~~s-------~~G--------------------~wT--------~~p~~f~N~fF 218 (297)
T cd08200 174 AQLLTLTAPEMTVLVGGLRVLGANYGGS-------KHG--------------------VFT--------DRPGVLTNDFF 218 (297)
T ss_pred HHhCCCChHHHhheecchhhcccCCCCC-------CCC--------------------CCc--------CCCCccccHHH
Confidence 999999999999999997 799887432 112 221 58999999999
Q ss_pred HHhhcCC--------------------c-----CcchhhhhccCCCcHHHHHHHhcC--CcchHHHHHHHHHHHhhcCC
Q 044134 291 KNLQNGL--------------------G-----LLPTDQLLLSDKRTEPIAKALASM--PSFLYGQIFGASMKKFGKVN 342 (363)
Q Consensus 291 ~nl~~~~--------------------g-----lL~SD~~L~~d~~t~~~V~~yA~d--~~~~F~~~Fa~Am~Km~~lg 342 (363)
+||+... | .+.+|.+|.+|++.|++|+.||.| +++ ||+||++||.||+++.
T Consensus 219 ~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~sd~~~R~~ve~YA~dd~~~~-F~~DF~~A~~Klmeld 296 (297)
T cd08200 219 VNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFGSNSELRAVAEVYASDDAQEK-FVKDFVAAWTKVMNLD 296 (297)
T ss_pred HHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhccCHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHhcC
Confidence 9999520 1 378899999999999999999998 888 9999999999999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=1.1e-33 Score=298.01 Aligned_cols=218 Identities=20% Similarity=0.273 Sum_probs=176.2
Q ss_pred HHHHHHHHH---HHhcCCchhhHHHHHhhcccc-------cCCCcc-eecCCCcccccccCC--CCC-chhHHHHHHHHH
Q 044134 82 IINKKVKEW---VDKDYKIAPSLLRLHYHDCAV-------RGCDGS-ILLNNDGSERRANVS--KTL-RGFEVIDDIKAE 147 (363)
Q Consensus 82 iV~~~v~~~---~~~d~~~aa~llRL~FHDcfv-------~GCDgS-ill~~~~~E~~~~~N--~~L-rgf~~Id~iK~~ 147 (363)
+|+++|.+. +....-..+.|||++||++.+ ||++|+ |.|. +|++++.| .+| +.+++++.||++
T Consensus 429 ~v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~---pe~~w~~N~p~gL~~vl~~Le~Ik~~ 505 (716)
T TIGR00198 429 LSEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE---PQKNWPVNEPTRLAKVLAVLEKIQAE 505 (716)
T ss_pred hHHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc---hhcCcccCCHHHHHHHHHHHHHHHHH
Confidence 345665554 445567789999999999986 899997 8877 69999999 688 588999999998
Q ss_pred HHhhCCCCcCHHHHHHHhhHhHHhhc---CCc--ceeecCCCCCCCCCCCcCCCC-C---CCC------------CCCHH
Q 044134 148 LEKECPKTVSCADILAAAARDATVLL---GGE--YWDVPLGRKDGRVSIGKEADI-V---PMG------------HDNVT 206 (363)
Q Consensus 148 le~~cp~~VScADilalAardAV~~~---GGP--~~~v~~GRrD~~~s~~~~~~~-L---P~p------------~~~~~ 206 (363)
+.. ..||.||+|+||+..|||.+ ||| .+++.+||.|.+.... ++++ . |.+ ....+
T Consensus 506 f~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~~~~ 581 (716)
T TIGR00198 506 FAK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVTPEE 581 (716)
T ss_pred cCC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccCCHHH
Confidence 842 27999999999999999999 998 5788999999987642 2222 2 211 12356
Q ss_pred HHHHHHHHCCCCcccceeeecc-ccccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCCCCCcc
Q 044134 207 TLLEFFQSMGLEVSDLVILSGA-HTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRWASEDAELDAESPWKF 285 (363)
Q Consensus 207 ~l~~~F~~~Gls~~dlVaLsGa-HTiG~ahc~~f~~Rl~~f~g~~~~dP~~d~~~a~~L~~~Cp~~~~~~~lD~~Tp~~F 285 (363)
.|++.|.++|||++|||||+|| |++|++|..+ +.| |+ - .+|.+|
T Consensus 582 ~l~d~a~~lglt~~EmvaL~Gg~r~lG~~~~~s-------~~G--------------------~~-------T-~~p~~f 626 (716)
T TIGR00198 582 LLLDKAQLLTLTAPEMTVLIGGMRVLGANHGGS-------KHG--------------------VF-------T-DRVGVL 626 (716)
T ss_pred HHHHHHHhCCCChHHHHheecchhhccccCCCC-------CCC--------------------CC-------c-CCCCcc
Confidence 7899999999999999999999 5999998532 112 11 1 589999
Q ss_pred ChHHHHHhhcCC--------------------c---C--cchhhhhccCCCcHHHHHHHhcCC--cchHHHHHHHHHHHh
Q 044134 286 DNMYYKNLQNGL--------------------G---L--LPTDQLLLSDKRTEPIAKALASMP--SFLYGQIFGASMKKF 338 (363)
Q Consensus 286 DN~Yy~nl~~~~--------------------g---l--L~SD~~L~~d~~t~~~V~~yA~d~--~~~F~~~Fa~Am~Km 338 (363)
||.||+||+... | + +.+|.+|.+|++.|++|+.||.|+ ++ |++||++||.|+
T Consensus 627 ~NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~sd~~lra~aE~YA~dd~~~~-F~~DF~~Aw~Kl 705 (716)
T TIGR00198 627 SNDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFGSNSILRAVAEVYAQDDAREK-FVKDFVAAWTKV 705 (716)
T ss_pred ccHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeeccCHHHHHHHHHHhcccccch-HHHHHHHHHHHH
Confidence 999999999621 1 2 277999999999999999999997 78 999999999999
Q ss_pred hcCC
Q 044134 339 GKVN 342 (363)
Q Consensus 339 ~~lg 342 (363)
++++
T Consensus 706 m~ld 709 (716)
T TIGR00198 706 MNLD 709 (716)
T ss_pred HhCC
Confidence 9987
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=3e-33 Score=293.25 Aligned_cols=218 Identities=20% Similarity=0.269 Sum_probs=179.8
Q ss_pred HHHHHHHHhcCCchhhHHHHHhhcccc-------cCCCcc-eecCCCcccccccCCC--CC-chhHHHHHHHHHHHhhC-
Q 044134 85 KKVKEWVDKDYKIAPSLLRLHYHDCAV-------RGCDGS-ILLNNDGSERRANVSK--TL-RGFEVIDDIKAELEKEC- 152 (363)
Q Consensus 85 ~~v~~~~~~d~~~aa~llRL~FHDcfv-------~GCDgS-ill~~~~~E~~~~~N~--~L-rgf~~Id~iK~~le~~c- 152 (363)
..+++.+....-..+.|||++||++.+ ||++|+ |.|. +|++++.|. +| +.+++++.||+++...-
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~---Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~ 518 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA---PQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQS 518 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc---cccCccccCHHHHHHHHHHHHHHHHHHhhccC
Confidence 567777777778899999999999986 899998 8887 699999999 88 58899999999996432
Q ss_pred -CCCcCHHHHHHHhhHhHHhhc---CC--cceeecCCCCCCCCCCCcCCC---C-CCCCC------------CCHHHHHH
Q 044134 153 -PKTVSCADILAAAARDATVLL---GG--EYWDVPLGRKDGRVSIGKEAD---I-VPMGH------------DNVTTLLE 210 (363)
Q Consensus 153 -p~~VScADilalAardAV~~~---GG--P~~~v~~GRrD~~~s~~~~~~---~-LP~p~------------~~~~~l~~ 210 (363)
...||.||+|+||+..|||.+ || |.+++.+||.|.+.... +++ . +|... ...+.|++
T Consensus 519 ~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d 597 (726)
T PRK15061 519 GGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEELLVD 597 (726)
T ss_pred CCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHHHHHH
Confidence 136999999999999999999 68 99999999999987543 222 1 46432 12478999
Q ss_pred HHHHCCCCcccceeeeccc-cccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCCCCCccChHH
Q 044134 211 FFQSMGLEVSDLVILSGAH-TIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRWASEDAELDAESPWKFDNMY 289 (363)
Q Consensus 211 ~F~~~Gls~~dlVaLsGaH-TiG~ahc~~f~~Rl~~f~g~~~~dP~~d~~~a~~L~~~Cp~~~~~~~lD~~Tp~~FDN~Y 289 (363)
.|.++|||++|||||+||| ++|..|..+ +.| |++ .+|.+|||.|
T Consensus 598 ~a~~lglt~~EmvaL~Gg~r~Lg~~~~~S-------~~G--------------------~~T--------~~p~~fsNdf 642 (726)
T PRK15061 598 KAQLLTLTAPEMTVLVGGLRVLGANYGGS-------KHG--------------------VFT--------DRPGVLTNDF 642 (726)
T ss_pred HHHhCCCChHHHhheecchhhcccCCCCC-------CCC--------------------CCc--------CCCCccccHH
Confidence 9999999999999999997 789887332 112 111 5899999999
Q ss_pred HHHhhcCC--------------------c---C--cchhhhhccCCCcHHHHHHHhcC--CcchHHHHHHHHHHHhhcCC
Q 044134 290 YKNLQNGL--------------------G---L--LPTDQLLLSDKRTEPIAKALASM--PSFLYGQIFGASMKKFGKVN 342 (363)
Q Consensus 290 y~nl~~~~--------------------g---l--L~SD~~L~~d~~t~~~V~~yA~d--~~~~F~~~Fa~Am~Km~~lg 342 (363)
|+||+... | + +.+|..|.+|++.|++|+.||.| +++ |++||++||.|+++++
T Consensus 643 FvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfgsds~lRa~aEvYA~dd~~~k-F~~DF~~Aw~Kvmeld 721 (726)
T PRK15061 643 FVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFGSNSQLRALAEVYASDDAKEK-FVRDFVAAWTKVMNLD 721 (726)
T ss_pred HHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecccCHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHhCC
Confidence 99999520 1 1 47899999999999999999998 889 9999999999999986
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.8e-30 Score=259.69 Aligned_cols=246 Identities=20% Similarity=0.258 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHhc--------CCchhhHHHHHhhcccc-------cCCC-cceecCCCcccccccCCCCC-chhHHHHHH
Q 044134 82 IINKKVKEWVDKD--------YKIAPSLLRLHYHDCAV-------RGCD-GSILLNNDGSERRANVSKTL-RGFEVIDDI 144 (363)
Q Consensus 82 iV~~~v~~~~~~d--------~~~aa~llRL~FHDcfv-------~GCD-gSill~~~~~E~~~~~N~~L-rgf~~Id~i 144 (363)
.|+.++++.+... ...++.+|||+||-+.+ +|.. |...+. ++.++|.|.+| +++.++.+|
T Consensus 71 Avk~Dl~aLmtdSqdWWPAD~GhYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFa---PlnSWPDN~nLDKarRLLWPI 147 (730)
T COG0376 71 AVKRDLKALMTDSQDWWPADFGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA---PLNSWPDNANLDKARRLLWPI 147 (730)
T ss_pred HHHHHHHHHhhcccccCcccccccccceeeeeecccCceecccCCCCCCCCceecc---cccCCCcccchHHHHHHhhhH
Confidence 5666777776654 35789999999999986 3433 333332 68899999999 699999999
Q ss_pred HHHHHhhCCCCcCHHHHHHHhhHhHHhhcCCcceeecCCCCCCCCCCC--------------------------------
Q 044134 145 KAELEKECPKTVSCADILAAAARDATVLLGGEYWDVPLGRKDGRVSIG-------------------------------- 192 (363)
Q Consensus 145 K~~le~~cp~~VScADilalAardAV~~~GGP~~~v~~GRrD~~~s~~-------------------------------- 192 (363)
|+++ +..+|+||++.||+.+|++.+|+|.+.+..||.|-..+..
T Consensus 148 KkKY----G~kiSWaDL~iLaGnvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMG 223 (730)
T COG0376 148 KKKY----GRKISWADLIILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMG 223 (730)
T ss_pred hHhh----cccccHhHhhhhhchhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheee
Confidence 9987 4699999999999999999999999999999999877754
Q ss_pred ------cCCCCCCCCCCCHHHHHHHHHHCCCCcccceeee-ccccccccccccccccccccCCCCCCCCCCCHHHHHH--
Q 044134 193 ------KEADIVPMGHDNVTTLLEFFQSMGLEVSDLVILS-GAHTIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNF-- 263 (363)
Q Consensus 193 ------~~~~~LP~p~~~~~~l~~~F~~~Gls~~dlVaLs-GaHTiG~ahc~~f~~Rl~~f~g~~~~dP~~d~~~a~~-- 263 (363)
+++++.|+|..+..+++..|++|+++++|.|||+ ||||+|.+|...-.+-+ +++|.--+--.+.
T Consensus 224 LIYVNPEGpng~PDpl~aA~dIRetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v-------g~ePe~a~ie~qGlG 296 (730)
T COG0376 224 LIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV-------GPEPEAAPIEQQGLG 296 (730)
T ss_pred eEEeCCCCCCCCCChhhhHHHHHHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc-------CCCccccchhhhccc
Confidence 4455589999999999999999999999999998 69999999965422111 2455432222222
Q ss_pred HhccCCC----CCCCCCCC---CCCCCccChHHHHHhhcC-----------------------------------CcCcc
Q 044134 264 LQRRCRW----ASEDAELD---AESPWKFDNMYYKNLQNG-----------------------------------LGLLP 301 (363)
Q Consensus 264 L~~~Cp~----~~~~~~lD---~~Tp~~FDN~Yy~nl~~~-----------------------------------~glL~ 301 (363)
+++.|.. +..+..+. ..||++|||+||.+|+.. .+||+
T Consensus 297 W~~~~g~G~G~dtitsGlE~~Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~Mlt 376 (730)
T COG0376 297 WANTYGSGKGPDTITSGLEGAWTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLT 376 (730)
T ss_pred cccccCCCcCcccccccccccCCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeec
Confidence 2344432 11222222 368999999999999864 16899
Q ss_pred hhhhhccCCCcHHHHHHHhcCCcchHHHHHHHHHHHhhcCC
Q 044134 302 TDQLLLSDKRTEPIAKALASMPSFLYGQIFGASMKKFGKVN 342 (363)
Q Consensus 302 SD~~L~~d~~t~~~V~~yA~d~~~~F~~~Fa~Am~Km~~lg 342 (363)
+|.+|..||..+++.++|..||+. |.+.|++||.||.+-.
T Consensus 377 tDlaLr~DP~Y~kIs~rf~e~pd~-F~~~FArAWfKLtHRD 416 (730)
T COG0376 377 TDLALRFDPEYEKISRRFLEDPDE-FADAFARAWFKLTHRD 416 (730)
T ss_pred cchhhhcChHHHHHHHHHHhCHHH-HHHHHHHHHHHHhhcc
Confidence 999999999999999999999999 9999999999998743
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.44 E-value=6.2e-13 Score=135.72 Aligned_cols=214 Identities=20% Similarity=0.262 Sum_probs=158.5
Q ss_pred HHHHHHHHhcCCchhhHHHHHhhcccc-------cCCCc-ceecCCCcccccccCCC--CC-chhHHHHHHHHHHHhhCC
Q 044134 85 KKVKEWVDKDYKIAPSLLRLHYHDCAV-------RGCDG-SILLNNDGSERRANVSK--TL-RGFEVIDDIKAELEKECP 153 (363)
Q Consensus 85 ~~v~~~~~~d~~~aa~llRL~FHDcfv-------~GCDg-Sill~~~~~E~~~~~N~--~L-rgf~~Id~iK~~le~~cp 153 (363)
..+++.+....-....|+-.+|-.+-+ +|.+| .|.|. +.++++.|. .| +-+.+++.|.+...
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa---PqkdWevN~P~~l~kvl~~le~iq~~fn---- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA---PQKDWEVNQPAELAKVLAVLEKIQKEFN---- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec---ccccCCCCCHHHHHHHHHHHHHHHHHhc----
Confidence 356667777777788999999998875 67776 67777 589999997 45 46789999998886
Q ss_pred CCcCHHHHHHHhhHhHHhhc---CCcce--eecCCCCCCCCCCCcCCCC---C-CCC------------CCCHHHHHHHH
Q 044134 154 KTVSCADILAAAARDATVLL---GGEYW--DVPLGRKDGRVSIGKEADI---V-PMG------------HDNVTTLLEFF 212 (363)
Q Consensus 154 ~~VScADilalAardAV~~~---GGP~~--~v~~GRrD~~~s~~~~~~~---L-P~p------------~~~~~~l~~~F 212 (363)
..||.||+|+|++..|||.+ +|-.+ ++.+||.|++..... ++. | |-. ...-.-|++.-
T Consensus 525 kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtD-v~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkA 603 (730)
T COG0376 525 KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTD-VESFAVLEPIADGFRNYVKKDYVLTPEELLVDKA 603 (730)
T ss_pred CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcc-hhhhhcccccchhhhhhccCCCcCCHHHHHHHHH
Confidence 47999999999999999886 77665 557999999775432 111 1 211 11234567888
Q ss_pred HHCCCCcccceeeeccc-cccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCCCCCccChHHHH
Q 044134 213 QSMGLEVSDLVILSGAH-TIGRTSCAQVQDRIYNYKGTGKPDPSINEKYLNFLQRRCRWASEDAELDAESPWKFDNMYYK 291 (363)
Q Consensus 213 ~~~Gls~~dlVaLsGaH-TiG~ahc~~f~~Rl~~f~g~~~~dP~~d~~~a~~L~~~Cp~~~~~~~lD~~Tp~~FDN~Yy~ 291 (363)
+-.+||..||++|.||- .+|.-+ .|+ ..+|..| .|.+..|.||.
T Consensus 604 qlL~LtapemtVLiGGlRvLg~n~-----------g~s----------------------~~GVfT~--~pg~LtndFFv 648 (730)
T COG0376 604 QLLTLTAPEMTVLIGGLRVLGANY-----------GGS----------------------KHGVFTD--RPGVLTNDFFV 648 (730)
T ss_pred HHhccCCccceEEEcceEeeccCC-----------CCC----------------------ccceecc--Ccccccchhhh
Confidence 88999999999999874 444322 111 1334443 68888999999
Q ss_pred HhhcCC--------------------c-----CcchhhhhccCCCcHHHHHHHhcC--CcchHHHHHHHHHHHhhcCC
Q 044134 292 NLQNGL--------------------G-----LLPTDQLLLSDKRTEPIAKALASM--PSFLYGQIFGASMKKFGKVN 342 (363)
Q Consensus 292 nl~~~~--------------------g-----lL~SD~~L~~d~~t~~~V~~yA~d--~~~~F~~~Fa~Am~Km~~lg 342 (363)
||+... | --..|..+-+++..|.+.+.||.+ ++. |.+||++||.|.+++.
T Consensus 649 nLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfGsns~LRA~aEVYa~dda~ek-Fv~DFvaaw~kVMn~D 725 (730)
T COG0376 649 NLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFGSNSELRALAEVYASDDAKEK-FVKDFVAAWTKVMNLD 725 (730)
T ss_pred hhhhccceeeeccccccceeccccccCceEeeeeEEeEEecCcHHHHHHHHHHhccchHHH-HHHHHHHHHHHHhccc
Confidence 998631 2 124577777888999999999975 567 9999999999999874
No 19
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=48.04 E-value=15 Score=29.68 Aligned_cols=17 Identities=24% Similarity=0.309 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhcCCC
Q 044134 327 YGQIFGASMKKFGKVNV 343 (363)
Q Consensus 327 F~~~Fa~Am~Km~~lgv 343 (363)
..++|..||.||+.||.
T Consensus 3 m~~~F~~am~KlavLG~ 19 (80)
T PF11895_consen 3 MQSAFKAAMAKLAVLGH 19 (80)
T ss_dssp HHHHHHHHHHHHCTTTS
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 56899999999999975
No 20
>PTZ00411 transaldolase-like protein; Provisional
Probab=39.37 E-value=1.1e+02 Score=31.01 Aligned_cols=48 Identities=15% Similarity=0.146 Sum_probs=29.6
Q ss_pred cCCcceeecCCCCCCCCCCCcCCCCCC-CCC---CCHHHHHHHHHHCCCCcc
Q 044134 173 LGGEYWDVPLGRKDGRVSIGKEADIVP-MGH---DNVTTLLEFFQSMGLEVS 220 (363)
Q Consensus 173 ~GGP~~~v~~GRrD~~~s~~~~~~~LP-~p~---~~~~~l~~~F~~~Gls~~ 220 (363)
+|-..+..+.||.+...-.+......+ ... ..+.++.+.|++.|+..+
T Consensus 180 AGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T~ 231 (333)
T PTZ00411 180 AGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKTI 231 (333)
T ss_pred cCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCeE
Confidence 477888999999866533221111122 111 357788889999998653
No 21
>PF15284 PAGK: Phage-encoded virulence factor
Probab=25.95 E-value=79 Score=24.25 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=22.3
Q ss_pred CCCccchHHHHHHHHHHHHHHhhhhhhhhhhccCCCCccccccc
Q 044134 1 MNYSSSISFFFFIILLVQLISISSAAYNEQDQNKKSPLDVDLPV 44 (363)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 44 (363)
|++--||.....+++ --+..|+++++.+|++.+-|= -++|+
T Consensus 1 Mkk~ksifL~l~~~L--sA~~FSasamAa~~~~~~~~~-~~~P~ 41 (61)
T PF15284_consen 1 MKKFKSIFLALVFIL--SAAGFSASAMAADSSPHRKPA-NIKPV 41 (61)
T ss_pred ChHHHHHHHHHHHHH--HHhhhhHHHHHHhhCCCCCCc-CCCCh
Confidence 455555433322222 235567888888887766552 44454
No 22
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=20.34 E-value=87 Score=27.75 Aligned_cols=33 Identities=27% Similarity=0.427 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHCCCCccccee-eeccccccccc
Q 044134 203 DNVTTLLEFFQSMGLEVSDLVI-LSGAHTIGRTS 235 (363)
Q Consensus 203 ~~~~~l~~~F~~~Gls~~dlVa-LsGaHTiG~ah 235 (363)
+++.+.+-.|++|||++.++-+ |--+|-||+++
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 3456666789999999988754 55899999886
Done!