BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044140
(166 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GM3|A Chain A, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|B Chain B, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|C Chain C, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|D Chain D, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|E Chain E, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
pdb|2GM3|F Chain F, Crystal Structure Of An Universal Stress Protein Family
Protein From Arabidopsis Thaliana At3g01520 With Amp
Bound
Length = 175
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 105 VMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
+ GDP++V+ + V+R P LV+GS G G ++ +G+VS + H C V +K
Sbjct: 107 IKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVXTIK 162
>pdb|3OLQ|A Chain A, The Crystal Structure Of A Universal Stress Protein E From
Proteus Mirabilis Hi4320
Length = 319
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 104 HVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
HV +G P V+ + E + I+VLG G + A LG+ ++ H C ++ +K
Sbjct: 248 HVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCDLLAIK 304
>pdb|1WJG|A Chain A, Crystal Structure Of A Probable Atp Binding Protein From
Thermus Themophilus Hb8
pdb|2Z08|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z09|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
pdb|2Z3V|A Chain A, Crystal Structure Of Uncharacterized Conserved Protein
From Thermus Thermophilus Hb8
Length = 137
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 80 KRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRA 139
+RA+ V ++A ++ V +++G P + +A ++V+G+ G GA+
Sbjct: 60 ERAEGVLEEARALTG---VPKEDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSL 116
Query: 140 VLGSVSDYSAHHCSCTVMIVK 160
LGS S C V++V+
Sbjct: 117 FLGSQSQRVVAEAPCPVLLVR 137
>pdb|2PFS|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea
Length = 150
Score = 34.7 bits (78), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 102 PVH--VMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159
P H ++ G+PR + E+ + ++V+GSHG + +LGS ++ H+ C V+ V
Sbjct: 87 PAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAV 145
Query: 160 KM 161
++
Sbjct: 146 RL 147
>pdb|3TNJ|A Chain A, Crystal Structure Of Universal Stress Protein From
Nitrosomonas Europaea With Amp Bound
Length = 150
Score = 34.7 bits (78), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 102 PVH--VMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159
P H ++ G+PR + E+ + ++V+GSHG + +LGS ++ H+ C V+ V
Sbjct: 87 PAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAV 145
Query: 160 KM 161
++
Sbjct: 146 RL 147
>pdb|3S3T|A Chain A, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|B Chain B, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|C Chain C, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|D Chain D, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|E Chain E, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|F Chain F, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|G Chain G, Universal Stress Protein Uspa From Lactobacillus Plantarum
pdb|3S3T|H Chain H, Universal Stress Protein Uspa From Lactobacillus Plantarum
Length = 146
Score = 33.5 bits (75), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 3/63 (4%)
Query: 100 DMPVHVMQGDPRNVMTEAVERFHPTI--LVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVM 157
++ + G P++ + E + HP I +VLG+ G + R +GS + Y H C V+
Sbjct: 85 NLKTEISYGIPKHTI-EDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVI 143
Query: 158 IVK 160
+++
Sbjct: 144 VIR 146
>pdb|1MJH|A Chain A, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
pdb|1MJH|B Chain B, Structure-Based Assignment Of The Biochemical Function Of
Hypothetical Protein Mj0577: A Test Case Of Structural
Genomics
Length = 162
Score = 33.1 bits (74), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 95 KREVNDMPVHV----MQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH 150
K+E+ D+ V + G P + + E I+++GSHG +K +LGSV++
Sbjct: 89 KKELEDVGFKVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIK 148
Query: 151 HCSCTVMIVKMPKS 164
+ V++VK S
Sbjct: 149 KSNKPVLVVKRKNS 162
>pdb|3LOQ|A Chain A, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
pdb|3LOQ|B Chain B, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
Length = 294
Score = 32.7 bits (73), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 103 VHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
VH+ G P + E + T + GS G G+V +LGS S+ V + K
Sbjct: 232 VHIESGTPHKAILAKREEINATTIFXGSRGAGSVXTXILGSTSESVIRRSPVPVFVCK 289
Score = 30.8 bits (68), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 17/106 (16%)
Query: 70 VINLVELDT-----------KKRAQKVADKATSICAKREVNDMPVHVMQ----GDPRNVM 114
VINL +L T + ++K + + K E + V++ GDP +
Sbjct: 58 VINLTKLSTVSGGIDIDHYIDEXSEKAEEVLPEVAQKIEAAGIKAEVIKPFPAGDPVVEI 117
Query: 115 TEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
+A E + + + GS G K+ +LGSVS+ H V I K
Sbjct: 118 IKASENY--SFIAXGSRGASKFKKILLGSVSEGVLHDSKVPVYIFK 161
>pdb|3HGM|A Chain A, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|B Chain B, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|C Chain C, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
pdb|3HGM|D Chain D, Universal Stress Protein Tead From The Trap Transporter
Teaabc Of Halomonas Elongata
Length = 147
Score = 28.5 bits (62), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 105 VMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159
V G P + + ++V+G+ G K +LGSV+ A C V++V
Sbjct: 93 VKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147
>pdb|2H9A|A Chain A, Corrinoid Iron-Sulfur Protein
pdb|2YCL|A Chain A, Complete Structure Of The Corrinoid,Iron-Sulfur Protein
Including The N-Terminal Domain With A 4fe-4s Cluster
Length = 445
Score = 28.5 bits (62), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 69 HVINLVELDTKKRAQKVADKATSICAKREVNDMPVHVMQGDPRNV 113
H +NLV L K +Q A A ++ REV D+P ++ G P +
Sbjct: 126 HSVNLVAL--KGSSQDAATFAKAVATAREVTDLP-FILIGTPEQL 167
>pdb|3FH0|A Chain A, Crystal Structure Of Putative Universal Stress Protein
Kpn_01444 - Atpase
pdb|3FH0|B Chain B, Crystal Structure Of Putative Universal Stress Protein
Kpn_01444 - Atpase
Length = 144
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 104 HVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
HV +G P++ + + ++++ SH + +LGS + H C+V++V+
Sbjct: 89 HVAEGSPKDKILALAKSLPADLVIIASH-RPDITTYLLGSNAAAVVRHAECSVLVVR 144
>pdb|3FDX|A Chain A, Putative Filament Protein UNIVERSAL STRESS PROTEIN F FROM
KLEBSIELLA Pneumoniae.
pdb|3FDX|B Chain B, Putative Filament Protein UNIVERSAL STRESS PROTEIN F FROM
KLEBSIELLA Pneumoniae
Length = 143
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 104 HVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
HV +G P++ + + ++++ SH + +LGS + H C+V++V+
Sbjct: 88 HVAEGSPKDKILALAKSLPADLVIIASH-RPDITTYLLGSNAAAVVRHAECSVLVVR 143
>pdb|4D8B|A Chain A, High Resolution Structure Of Monomeric S. Progenies Speb
Reveals Role Of Glycine-Rich Active Site Loop
pdb|4D8E|A Chain A, High Resolution Structures Of Monomeric S. Pyogenes Speb
Reveals Role Of Glycine-Rich Active Site Loop
pdb|4D8I|A Chain A, High Resolution Structures Of Monomeric S. Pyogenes Speb
Reveals Role Of Glycine-rich Active Site Loop
Length = 261
Score = 26.9 bits (58), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 95 KREVNDMPVHVMQGDPRNVMTEAVERFHP 123
K +N +H QG+P N++T +E+ P
Sbjct: 5 KSLLNSKGIHYNQGNPYNLLTPVIEKVKP 33
>pdb|2ISB|A Chain A, Crystal Structure Of Fumarase Of Fum-1 (Np_069927.1) From
Archaeoglobus Fulgidus At 1.66 A Resolution
Length = 192
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 108 GDPRNVMTEAVERFHPTILVLGSHGYGAVKR 138
G P V VERF P I+ + +HG +R
Sbjct: 162 GXPEAVWLLEVERFGPCIVAIDAHGNSLYRR 192
>pdb|1OVM|A Chain A, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|B Chain B, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|C Chain C, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|D Chain D, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
Length = 552
Score = 26.9 bits (58), Expect = 5.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 119 ERFHPTILVLGSHGYGAVKRAVLGSVSDYS 148
++ HP ILVL + GY V+RA+ G+ Y+
Sbjct: 451 DKQHPIILVLNNEGY-TVERAIHGAEQRYN 479
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,570,530
Number of Sequences: 62578
Number of extensions: 143220
Number of successful extensions: 345
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 327
Number of HSP's gapped (non-prelim): 20
length of query: 166
length of database: 14,973,337
effective HSP length: 92
effective length of query: 74
effective length of database: 9,216,161
effective search space: 681995914
effective search space used: 681995914
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)