BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044140
(166 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LGG8|USPAL_ARATH Universal stress protein A-like protein OS=Arabidopsis thaliana
GN=At3g01520 PE=1 SV=2
Length = 175
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 105 VMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
+ GDP++V+ + V+R P LV+GS G G ++ +G+VS + H C VM +K
Sbjct: 107 IKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKHAECPVMTIK 162
>sp|P42297|YXIE_BACSU Universal stress protein YxiE OS=Bacillus subtilis (strain 168)
GN=yxiE PE=3 SV=1
Length = 148
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 73/156 (46%), Gaps = 16/156 (10%)
Query: 9 MMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIH----ARPNPPSLLGLSGAGQGS 64
M+VAID S+ S AL+ A+ A +L ++H A SL G+ +
Sbjct: 5 MLVAIDGSDMSAKALDAAVH-----LAKEQQAELSILHVGREAVVTTSSLTGIVYVPE-- 57
Query: 65 AGSAHVINLVELDTKKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPT 124
H I+ + + KK K+ + A A++ V ++ G+P + + + +
Sbjct: 58 ----HFIDEIRNEVKKEGLKILENAKEKAAEKGVQAETIYA-NGEPAHEILNHAKEKGVS 112
Query: 125 ILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
++V+GS G +K +LGSVS + +C V+IV+
Sbjct: 113 LIVVGSRGISGLKEMMLGSVSHKVSQLSTCPVLIVR 148
>sp|P74148|Y1388_SYNY3 Universal stress protein Sll1388 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=sll1388 PE=3 SV=1
Length = 154
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 71/158 (44%), Gaps = 16/158 (10%)
Query: 9 MMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGL--SGAGQGSAG 66
++VA+D S + L+ A+ + QL++ + P L + S G+ + G
Sbjct: 6 ILVALDRSELAKEVLQQAI-----ALGQKESSQLMVFYCIPVDSQDLSIYPSFYGEAAIG 60
Query: 67 SAHVIN--LVELDTKKRAQKVADKATSICAKREVNDMPVH--VMQGDPRNVMTEAVERFH 122
+ +I L E T+ R + SI + + + + V G+P + + + +
Sbjct: 61 FSQIIKEHLEEQQTEAR-----EWLQSIVQQVQEDGVACEWDVKVGEPGRWIRDMAKNWD 115
Query: 123 PTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
++VLG G + LGSVS Y HH C+V+IV+
Sbjct: 116 ADLVVLGRRGLKGLAEVFLGSVSSYVIHHVQCSVLIVQ 153
>sp|Q57951|Y531_METJA Universal stress protein MJ0531 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0531 PE=3 SV=1
Length = 170
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 104 HVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMPK 163
+++G P N + E E+ ++V+G+ G ++R +LGSV++ + C V++VK PK
Sbjct: 109 EMLEGVPANEIVEFAEKKKADLIVMGTTGKTGLERILLGSVAERVIKNAHCPVLVVKKPK 168
Query: 164 SK 165
+
Sbjct: 169 KE 170
>sp|P45680|USPA2_COXBU Universal stress protein A homolog 2 OS=Coxiella burnetii (strain
RSA 493 / Nine Mile phase I) GN=uspA2 PE=1 SV=1
Length = 146
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 17/162 (10%)
Query: 3 DQTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQ 62
D K I++ D N +E A + N QL LIHA + S GA
Sbjct: 2 DNYKKILVALALDPNSDRPLVEKA-----KELSANRDAQLYLIHAVEHLSSY----GAAY 52
Query: 63 GSAGSAHVINLVELDTKKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFH 122
G A V +++ + KKR ++A + +I + ++ V G + ++ E + +
Sbjct: 53 GVAAGVDVEDMLLEEAKKRMNEIASQ-LNISSDHQI------VKVGPAKFLILEQAKNWG 105
Query: 123 PTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMPKS 164
++++GSHG ++ +LGS S+ H C V+ V++ S
Sbjct: 106 VDLIIVGSHGRHGIQ-LLLGSTSNAVLHGAKCDVLAVRIKGS 146
>sp|P0AAC3|USPE_SHIFL Universal stress protein E OS=Shigella flexneri GN=uspE PE=3 SV=2
Length = 316
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 98 VNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVM 157
+N+ HV +G P V+ + E I+VLG+ G + A LG+ ++ H C ++
Sbjct: 238 INENMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLL 297
Query: 158 IVK 160
++K
Sbjct: 298 VIK 300
>sp|P0AAC0|USPE_ECOLI Universal stress protein E OS=Escherichia coli (strain K12) GN=uspE
PE=1 SV=2
Length = 316
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 98 VNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVM 157
+N+ HV +G P V+ + E I+VLG+ G + A LG+ ++ H C ++
Sbjct: 238 INENMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLL 297
Query: 158 IVK 160
++K
Sbjct: 298 VIK 300
>sp|P0AAC1|USPE_ECOL6 Universal stress protein E OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=uspE PE=3 SV=2
Length = 316
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 98 VNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVM 157
+N+ HV +G P V+ + E I+VLG+ G + A LG+ ++ H C ++
Sbjct: 238 INENMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLL 297
Query: 158 IVK 160
++K
Sbjct: 298 VIK 300
>sp|P0AAC2|USPE_ECO57 Universal stress protein E OS=Escherichia coli O157:H7 GN=uspE PE=3
SV=2
Length = 316
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%)
Query: 98 VNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVM 157
+N+ HV +G P V+ + E I+VLG+ G + A LG+ ++ H C ++
Sbjct: 238 INENMTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGISAAFLGNTAEQVIDHLRCDLL 297
Query: 158 IVK 160
++K
Sbjct: 298 VIK 300
>sp|Q8ZP84|USPE_SALTY Universal stress protein E OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=uspE PE=3 SV=3
Length = 315
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%)
Query: 91 SICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH 150
++ K +++ HV +G P V+ + E I+VLG+ G + A LG+ ++
Sbjct: 231 ALRQKFSIDEKVTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGLSAAFLGNTAEQVID 290
Query: 151 HCSCTVMIVK 160
H C ++++K
Sbjct: 291 HLRCDLLVIK 300
>sp|Q8Z788|USPE_SALTI Universal stress protein E OS=Salmonella typhi GN=uspE PE=3 SV=3
Length = 315
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%)
Query: 91 SICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH 150
++ K +++ HV +G P V+ + E I+VLG+ G + A LG+ ++
Sbjct: 231 ALRQKFSIDEKVTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGLSAAFLGNTAEQVID 290
Query: 151 HCSCTVMIVK 160
H C ++++K
Sbjct: 291 HLRCDLLVIK 300
>sp|O07552|NHAX_BACSU Stress response protein NhaX OS=Bacillus subtilis (strain 168)
GN=nhaX PE=2 SV=2
Length = 166
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 79 KKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKR 138
+ R ++V +A + +++ D + +++GDP + E R ++V GS +K+
Sbjct: 86 EDRTEEVIAEARMMLNEQQA-DGDIDILEGDPAESIIEHANRISADMIVTGSRDQNRLKK 144
Query: 139 AVLGSVSDYSAHHCSCTVMIVK 160
+ GSVS+ + V+IVK
Sbjct: 145 LIFGSVSEKLSAKSDIPVLIVK 166
>sp|P72745|Y1101_SYNY3 Universal stress protein Slr1101 OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=slr1101 PE=3 SV=1
Length = 108
Score = 39.3 bits (90), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 108 GDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162
G P ++ + ++ + I+V+G G + +LGSV +Y HH C V +V P
Sbjct: 53 GSPGKIICQRAKQDNSDIIVVGHRGRWGLSEILLGSVGNYVFHHAHCCVFVVPTP 107
>sp|Q2FXL6|Y1819_STAA8 Putative universal stress protein SAOUHSC_01819 OS=Staphylococcus
aureus (strain NCTC 8325) GN=SAOUHSC_01819 PE=3 SV=1
Length = 166
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 78 TKKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVE-RFHPTILVLGSHGYGAV 136
+K A+++ + + V D+ + G P++++ + + + +++ G+ G AV
Sbjct: 60 SKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAV 119
Query: 137 KRAVLGSVSDYSAHHCSCTVMIVKMPK 163
+R ++GSVS+ H C V++V+ +
Sbjct: 120 ERFIVGSVSESIVRHAPCDVLVVRTEE 146
>sp|Q6GFZ7|Y1788_STAAR Putative universal stress protein SAR1788 OS=Staphylococcus aureus
(strain MRSA252) GN=SAR1788 PE=3 SV=1
Length = 166
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 78 TKKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVE-RFHPTILVLGSHGYGAV 136
+K A+++ + + V D+ + G P++++ + + + +++ G+ G AV
Sbjct: 60 SKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAV 119
Query: 137 KRAVLGSVSDYSAHHCSCTVMIVKMPK 163
+R ++GSVS+ H C V++V+ +
Sbjct: 120 ERFIVGSVSESIVRHAPCDVLVVRTEE 146
>sp|Q5HF64|Y1759_STAAC Putative universal stress protein SACOL1759 OS=Staphylococcus
aureus (strain COL) GN=SACOL1759 PE=3 SV=1
Length = 166
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 78 TKKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVE-RFHPTILVLGSHGYGAV 136
+K A+++ + + V D+ + G P++++ + + + +++ G+ G AV
Sbjct: 60 SKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAV 119
Query: 137 KRAVLGSVSDYSAHHCSCTVMIVKMPK 163
+R ++GSVS+ H C V++V+ +
Sbjct: 120 ERFIVGSVSESIVRHAPCDVLVVRTEE 146
>sp|Q99TF3|Y1710_STAAM Putative universal stress protein SAV1710 OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=SAV1710 PE=1 SV=1
Length = 166
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 78 TKKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVE-RFHPTILVLGSHGYGAV 136
+K A+++ + + V D+ + G P++++ + + + +++ G+ G AV
Sbjct: 60 SKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAV 119
Query: 137 KRAVLGSVSDYSAHHCSCTVMIVKMPK 163
+R ++GSVS+ H C V++V+ +
Sbjct: 120 ERFIVGSVSESIVRHAPCDVLVVRTEE 146
>sp|Q2FG28|Y1656_STAA3 Putative universal stress protein SAUSA300_1656 OS=Staphylococcus
aureus (strain USA300) GN=SAUSA300_1656 PE=3 SV=1
Length = 166
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 78 TKKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVE-RFHPTILVLGSHGYGAV 136
+K A+++ + + V D+ + G P++++ + + + +++ G+ G AV
Sbjct: 60 SKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAV 119
Query: 137 KRAVLGSVSDYSAHHCSCTVMIVKMPK 163
+R ++GSVS+ H C V++V+ +
Sbjct: 120 ERFIVGSVSESIVRHAPCDVLVVRTEE 146
>sp|Q7A0N0|Y1653_STAAW Putative universal stress protein MW1653 OS=Staphylococcus aureus
(strain MW2) GN=MW1653 PE=3 SV=1
Length = 166
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 78 TKKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVE-RFHPTILVLGSHGYGAV 136
+K A+++ + + V D+ + G P++++ + + + +++ G+ G AV
Sbjct: 60 SKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAV 119
Query: 137 KRAVLGSVSDYSAHHCSCTVMIVKMPK 163
+R ++GSVS+ H C V++V+ +
Sbjct: 120 ERFIVGSVSESIVRHAPCDVLVVRTEE 146
>sp|Q6G8L7|Y1637_STAAS Putative universal stress protein SAS1637 OS=Staphylococcus aureus
(strain MSSA476) GN=SAS1637 PE=3 SV=1
Length = 166
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 78 TKKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVE-RFHPTILVLGSHGYGAV 136
+K A+++ + + V D+ + G P++++ + + + +++ G+ G AV
Sbjct: 60 SKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAV 119
Query: 137 KRAVLGSVSDYSAHHCSCTVMIVKMPK 163
+R ++GSVS+ H C V++V+ +
Sbjct: 120 ERFIVGSVSESIVRHAPCDVLVVRTEE 146
>sp|Q2YTD0|Y1569_STAAB Putative universal stress protein SAB1569 OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=SAB1569 PE=3 SV=1
Length = 166
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 78 TKKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVE-RFHPTILVLGSHGYGAV 136
+K A+++ + + V D+ + G P++++ + + + +++ G+ G AV
Sbjct: 60 SKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAV 119
Query: 137 KRAVLGSVSDYSAHHCSCTVMIVKMPK 163
+R ++GSVS+ H C V++V+ +
Sbjct: 120 ERFIVGSVSESIVRHAPCDVLVVRTEE 146
>sp|Q7A551|Y1532_STAAN Putative universal stress protein SA1532 OS=Staphylococcus aureus
(strain N315) GN=SA1532 PE=1 SV=1
Length = 166
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 78 TKKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVE-RFHPTILVLGSHGYGAV 136
+K A+++ + + V D+ + G P++++ + + + +++ G+ G AV
Sbjct: 60 SKHFAEELLNGYKEVATNAGVKDVETRLEFGSPKSIIPKKLAHEINADLIMSGTSGLNAV 119
Query: 137 KRAVLGSVSDYSAHHCSCTVMIVKMPK 163
+R ++GSVS+ H C V++V+ +
Sbjct: 120 ERFIVGSVSESIVRHAPCDVLVVRTEE 146
>sp|O53472|Y2026_MYCTU Universal stress protein Rv2026c/MT2085 OS=Mycobacterium
tuberculosis GN=Rv2026c PE=2 SV=1
Length = 294
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 125 ILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159
++V+GS G GA+ R +LGS+S HH C V I+
Sbjct: 113 LMVVGSQGMGALGRLLLGSISTALLHHARCPVAII 147
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 69/162 (42%), Gaps = 29/162 (17%)
Query: 3 DQTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQ 62
D P++ V ID S S A A D A LV +HA + LG+
Sbjct: 156 DSDAPVL-VGIDGSPASEAATALAFDE-----ASRRRVDLVALHAWTD----LGM----- 200
Query: 63 GSAGSAHVINLVELDTKKRAQKVADKATSICA--KREVNDMPVH--VMQGDPRNVMTEAV 118
++ +D ++R ++ A+ A + + D+ VH ++ P + E
Sbjct: 201 --------FPVLGMDWREREKREAEVLAERLAGWQEQYPDVRVHRSLVCDKPARWLLEHS 252
Query: 119 ERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
E+ ++V+GSHG G +LGSVS AH V++V+
Sbjct: 253 EQAQ--LVVVGSHGRGGFSGMLLGSVSSAVAHSVRIPVIVVR 292
>sp|P60005|USPE_PHOLL Universal stress protein E OS=Photorhabdus luminescens subsp.
laumondii (strain TT01) GN=uspE PE=3 SV=1
Length = 314
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 34/63 (53%)
Query: 98 VNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVM 157
+++ H+ +G P +V+ + + + I+VLG G + A LG+ +++ H C ++
Sbjct: 239 IDEKYTHIHEGLPESVIPQMCDEMNAGIIVLGILGRTGLSAAFLGNTAEHVIDHLKCDIL 298
Query: 158 IVK 160
+K
Sbjct: 299 TIK 301
>sp|P74897|YQA3_THEAQ Universal stress protein in QAH/OAS sulfhydrylase 3'region
OS=Thermus aquaticus PE=3 SV=1
Length = 137
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 80 KRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRA 139
+RA+KV +A ++ V ++QG P + +A ++V+G+ G GAV
Sbjct: 60 ERAEKVRAEAMALTG---VPREDALLLQGRPAEAILQAAIGEKADLIVMGTRGLGAVGSL 116
Query: 140 VLGSVSDYSAHHCSCTVMIVK 160
LGS S C V++V+
Sbjct: 117 FLGSQSQKVVAEAPCPVLLVR 137
>sp|P87132|YFK5_SCHPO Uncharacterized protein C167.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC167.05 PE=1 SV=2
Length = 601
Score = 36.6 bits (83), Expect = 0.074, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 4/72 (5%)
Query: 97 EVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTV 156
EVN +H ++++ E ++ P+++V+GS G +K +LGS S+Y + S V
Sbjct: 508 EVNIEVIH--HEKAKHLIIEMIDYIEPSLVVMGSRGRSHLKGVLLGSFSNYLVNKSSVPV 565
Query: 157 MIV--KMPKSKH 166
M+ K+ K+K
Sbjct: 566 MVARKKLKKNKQ 577
>sp|P44195|USPE_HAEIN Universal stress protein E homolog OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=uspE PE=1
SV=2
Length = 309
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 104 HVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMPK 163
HV +G P V+ E + +++LG+ G + A+LG+ +++ SC ++ +K K
Sbjct: 247 HVREGFPEEVIPEVAKEIEAELVILGTVGRTGLSAALLGNTAEHVISKLSCNLLGIKPSK 306
>sp|Q83AC1|USPA1_COXBU Universal stress protein A homolog 1 OS=Coxiella burnetii (strain
RSA 493 / Nine Mile phase I) GN=uspA1 PE=3 SV=1
Length = 144
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 74 VELDTKKRAQKVADKA-TSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHG 132
+ ++ ++ + A KA T +C +V H + G ++++ E E+ + ++V+G+HG
Sbjct: 55 INVNLEQTIESEARKALTELCHTVKVPSERQHTLSGVVKHMVIELAEKLNIDLIVVGTHG 114
Query: 133 YGAVKRAVLGSVSDYSAHHCSCTVMIVKMPK 163
+ + + +LGS ++ H +C V+ V M +
Sbjct: 115 HHGLDK-LLGSRANAILHVATCDVLAVWMKE 144
>sp|O27222|Y1154_METTH Universal stress protein MTH_1154 OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_1154 PE=3 SV=1
Length = 146
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 107 QGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
+GDP + + + E ++V+G+ G V + +LGSVS+ H+ CT+ +V+
Sbjct: 92 EGDPADEIVKVAEEEDVDVIVMGT-GKSLVDKHLLGSVSEKVVHYAPCTIHLVR 144
>sp|Q8CS61|Y1385_STAES Putative universal stress protein SE_1385 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_1385 PE=3 SV=1
Length = 166
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 98 VNDMPVHVMQGDPRNVMTEAVERFHPTILVL-GSHGYGAVKRAVLGSVSDYSAHHCSCTV 156
V ++ + G P+ ++ + + R L++ G+ G AV+R ++GSVS+ H C V
Sbjct: 80 VKNVDTRLEFGSPKAIIPKKLARDVGADLIMSGTSGLNAVERFIVGSVSEAIVRHAPCDV 139
Query: 157 MIVK---MPK 163
++V+ MP+
Sbjct: 140 LVVRTEEMPE 149
>sp|Q5HNJ5|Y1273_STAEQ Putative universal stress protein SERP1273 OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP1273 PE=3
SV=1
Length = 166
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 98 VNDMPVHVMQGDPRNVMTEAVERFHPTILVL-GSHGYGAVKRAVLGSVSDYSAHHCSCTV 156
V ++ + G P+ ++ + + R L++ G+ G AV+R ++GSVS+ H C V
Sbjct: 80 VKNVDTRLEFGSPKAIIPKKLARDVGADLIMSGTSGLNAVERFIVGSVSEAIVRHAPCDV 139
Query: 157 MIVK---MPK 163
++V+ MP+
Sbjct: 140 LVVRTEEMPE 149
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 66 GSAHVINLVELDTKKRAQKVADKATSICAKREVNDMPVHVMQGDPRN 112
G+ I+L+E DT ++A+ V+++ ++CA E P+H D RN
Sbjct: 776 GTQDSISLLEADTLRKAKTVSNQQANLCATIENPKEPIHGCSKDTRN 822
>sp|Q8ZE81|USPE_YERPE Universal stress protein E OS=Yersinia pestis GN=uspE PE=3 SV=1
Length = 318
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/63 (22%), Positives = 34/63 (53%)
Query: 98 VNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVM 157
+++ HV +G P V+ + E + ++VLG+ G + A +G+ +++ + C ++
Sbjct: 238 IDEKFTHVEKGLPEEVIPDLAEHLNAGVVVLGTLGRTGLSAAFIGNTTEHVIDNLKCDLL 297
Query: 158 IVK 160
+K
Sbjct: 298 AIK 300
>sp|Q4L751|Y1215_STAHJ Putative universal stress protein SH1215 OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH1215 PE=3 SV=1
Length = 165
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 125 ILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMPK 163
+++ G+ G AV+R ++GSVS+ H C V++V+ +
Sbjct: 108 LIMCGTSGLNAVERFIVGSVSEAIVRHAPCDVLVVRTEE 146
>sp|Q49YE0|Y1056_STAS1 Putative universal stress protein SSP1056 OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP1056 PE=3 SV=1
Length = 167
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 25/39 (64%)
Query: 125 ILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMPK 163
+++ G+ G AV+R ++GSVS+ H C V++V+ +
Sbjct: 108 LIMCGTSGLNAVERFIVGSVSEAIVRHSPCDVLVVRTEE 146
>sp|Q50777|Y1538_METTM Universal stress protein MTBMA_c15380 OS=Methanothermobacter
marburgensis (strain DSM 2133 / 14651 / NBRC 100331 /
OCM 82 / Marburg) GN=MTBMA_c15380 PE=3 SV=1
Length = 143
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 105 VMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
+++G+P + + + E ++++G+ G V + +LGSVS+ H+ CT+ +V+
Sbjct: 87 MLEGNPADEIVKLAEEEDVDVIIMGT-GKSLVDKHLLGSVSEKVVHYAPCTIHLVR 141
>sp|P64922|Y2028_MYCBO Universal stress protein Mb2028c OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=Mb2028c PE=3 SV=1
Length = 295
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 125 ILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159
++VLGS G GA+ R +LGSVS C V ++
Sbjct: 113 MVVLGSSGRGALARGLLGSVSSSLVRRAGCPVAVI 147
>sp|P64921|Y2005_MYCTU Universal stress protein Rv2005c/MT2061 OS=Mycobacterium
tuberculosis GN=Rv2005c PE=1 SV=1
Length = 295
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 125 ILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159
++VLGS G GA+ R +LGSVS C V ++
Sbjct: 113 MVVLGSSGRGALARGLLGSVSSSLVRRAGCPVAVI 147
>sp|A0QZA1|Y3950_MYCS2 Universal stress protein MSMEG_3950/MSMEI_3859 OS=Mycobacterium
smegmatis (strain ATCC 700084 / mc(2)155) GN=MSMEG_3950
PE=1 SV=1
Length = 294
Score = 32.7 bits (73), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 100 DMPVH--VMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVM 157
D+ VH V + P + E E ++V+GSHG G +LGSVS A + VM
Sbjct: 232 DVKVHRRVERAQPAYWLLE--EAKQAQLVVVGSHGRGGFTGMLLGSVSSRVAQSATTPVM 289
Query: 158 IVK 160
+V+
Sbjct: 290 VVR 292
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 125 ILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159
++V+G+ G GA+ R +LGS S H+ S V++V
Sbjct: 113 MVVVGNRGMGALGRVLLGSTSTSLLHYASGPVVVV 147
>sp|Q57997|Y577_METJA Universal stress protein MJ0577 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0577 PE=1 SV=1
Length = 162
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 12/124 (9%)
Query: 45 IHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKATSICAKREVNDMPVH 104
I R LLG++G + + EL K ++ +K +I K+E+ D+
Sbjct: 47 IKKRDIFSLLLGVAGLNKSVEEFEN-----ELKNK-LTEEAKNKMENI--KKELEDVGFK 98
Query: 105 V----MQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
V + G P + + E I+++GSHG +K +LGSV++ + V++VK
Sbjct: 99 VKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNKPVLVVK 158
Query: 161 MPKS 164
S
Sbjct: 159 RKNS 162
>sp|Q43857|INVA_VICFA Acid beta-fructofuranosidase OS=Vicia faba GN=VCINV PE=2 SV=1
Length = 642
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 2 GDQTKPIMMVAIDDSNHSYYAL 23
GD+ K +M V++DD H YYAL
Sbjct: 321 GDEVKHVMKVSLDDDRHDYYAL 342
>sp|Q6D237|MLTF_ERWCT Membrane-bound lytic murein transglycosylase F OS=Erwinia
carotovora subsp. atroseptica (strain SCRI 1043 / ATCC
BAA-672) GN=mltF PE=3 SV=1
Length = 481
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 41 QLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQ----KVADKATSICAKR 96
Q+V P P +L L G ++GSAH L +L +K Q +D++T K
Sbjct: 131 QMVYRLGSPRPKTLDKLQGRLVVTSGSAHAATLRDLKAEKYPQLSWESASDQSTQELLK- 189
Query: 97 EVNDMPVHVMQGDPRNVMTEAVERFHPTILV 127
+V D + GD +V ++R HP + V
Sbjct: 190 QVADGKLDYTLGD--SVTIGLMQRIHPQLAV 218
>sp|P0A4P8|USPF_SHIFL Universal stress protein F OS=Shigella flexneri GN=uspF PE=3 SV=1
Length = 144
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 103 VHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
VHV +G P++ + E ++ ++++ SH + +LGS + H C+V++V+
Sbjct: 88 VHVEEGSPKDRILELAKKIPAHMIIIASHRPD-ITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|P0A4P6|USPF_ECOL6 Universal stress protein F OS=Escherichia coli O6:H1 (strain CFT073
/ ATCC 700928 / UPEC) GN=uspF PE=3 SV=1
Length = 144
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 103 VHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
VHV +G P++ + E ++ ++++ SH + +LGS + H C+V++V+
Sbjct: 88 VHVEEGSPKDRILELAKKIPAHMIIIASHRPD-ITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|Q0TI19|USPF_ECOL5 Universal stress protein F OS=Escherichia coli O6:K15:H31 (strain
536 / UPEC) GN=uspF PE=3 SV=1
Length = 144
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 103 VHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
VHV +G P++ + E ++ ++++ SH + +LGS + H C+V++V+
Sbjct: 88 VHVEEGSPKDRILELAKKIPAHMIIIASHRPD-ITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|P0A4P7|USPF_ECO57 Universal stress protein F OS=Escherichia coli O157:H7 GN=uspF PE=3
SV=1
Length = 144
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 103 VHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
VHV +G P++ + E ++ ++++ SH + +LGS + H C+V++V+
Sbjct: 88 VHVEEGSPKDRILELAKKIPAHMIIIASHRPD-ITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|P37903|USPF_ECOLI Universal stress protein F OS=Escherichia coli (strain K12) GN=uspF
PE=1 SV=2
Length = 144
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 103 VHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
VHV +G P++ + E ++ ++++ SH + +LGS + H C+V++V+
Sbjct: 88 VHVEEGSPKDRILELAKKIPAHMIIIASHRPD-ITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|P67091|USPF_SALTY Universal stress protein F OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=uspF PE=3 SV=1
Length = 144
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 104 HVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
HV +G P++ + E ++ ++++ SH + +LGS + H C+V++V+
Sbjct: 89 HVAEGSPKDKILEMAKKLPADMVIIASHRPD-ITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|P67092|USPF_SALTI Universal stress protein F OS=Salmonella typhi GN=uspF PE=3 SV=1
Length = 144
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 104 HVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160
HV +G P++ + E ++ ++++ SH + +LGS + H C+V++V+
Sbjct: 89 HVAEGSPKDKILEMAKKLPADMVIIASHRPD-ITTYLLGSNAAAVVRHAECSVLVVR 144
>sp|Q1WTB5|PGK_LACS1 Phosphoglycerate kinase OS=Lactobacillus salivarius (strain UCC118)
GN=pgk PE=3 SV=1
Length = 400
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 14/68 (20%)
Query: 72 NLVELDTKKRAQKVADKA--------TSICAKREVNDMPVHVMQGD-PRNVMT-----EA 117
+LVE D + A+++ +KA ++CAK ND P V++GD P M ++
Sbjct: 246 SLVEKDKIELAKEIMEKAGDKLVLPVDNVCAKEFNNDAPSEVVEGDIPDGYMALDIGPKS 305
Query: 118 VERFHPTI 125
VE F T+
Sbjct: 306 VELFEDTL 313
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,150,143
Number of Sequences: 539616
Number of extensions: 2515364
Number of successful extensions: 6159
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 6112
Number of HSP's gapped (non-prelim): 64
length of query: 166
length of database: 191,569,459
effective HSP length: 109
effective length of query: 57
effective length of database: 132,751,315
effective search space: 7566824955
effective search space used: 7566824955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)