Query 044140
Match_columns 166
No_of_seqs 140 out of 1799
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 20:39:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044140.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044140hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s3t_A Nucleotide-binding prot 100.0 4.2E-31 1.4E-35 176.4 15.3 144 2-160 1-146 (146)
2 1mjh_A Protein (ATP-binding do 100.0 4E-30 1.4E-34 174.6 16.6 155 1-163 1-161 (162)
3 2dum_A Hypothetical protein PH 100.0 1.1E-29 3.8E-34 173.7 15.0 154 4-165 3-160 (170)
4 3fg9_A Protein of universal st 100.0 1.5E-29 5.2E-34 170.8 14.0 141 3-160 12-156 (156)
5 3hgm_A Universal stress protei 100.0 2.6E-30 8.9E-35 172.7 9.1 144 5-159 1-147 (147)
6 3idf_A USP-like protein; unive 100.0 1.2E-28 4.2E-33 163.0 14.5 136 6-160 1-138 (138)
7 3tnj_A Universal stress protei 100.0 6.4E-29 2.2E-33 166.6 12.8 145 4-163 4-149 (150)
8 2gm3_A Unknown protein; AT3G01 100.0 1.1E-28 3.8E-33 169.6 14.1 153 3-163 2-165 (175)
9 2z08_A Universal stress protei 100.0 1.1E-28 3.8E-33 163.2 12.6 136 5-160 1-137 (137)
10 3dlo_A Universal stress protei 100.0 1.5E-28 5.2E-33 166.0 13.0 132 3-160 21-155 (155)
11 1tq8_A Hypothetical protein RV 100.0 5.3E-28 1.8E-32 164.7 13.5 145 3-163 14-160 (163)
12 3fdx_A Putative filament prote 99.9 1.5E-27 5.3E-32 158.5 8.8 138 7-160 2-143 (143)
13 1jmv_A USPA, universal stress 99.9 1E-26 3.6E-31 154.2 10.1 139 5-163 1-140 (141)
14 3olq_A Universal stress protei 99.9 8.4E-26 2.9E-30 168.4 14.5 147 4-163 5-152 (319)
15 3loq_A Universal stress protei 99.9 2.1E-25 7.2E-30 164.7 11.3 143 4-163 20-164 (294)
16 3mt0_A Uncharacterized protein 99.9 3.7E-24 1.3E-28 157.8 15.7 138 5-162 133-277 (290)
17 3cis_A Uncharacterized protein 99.9 2.3E-24 7.9E-29 160.2 13.7 142 4-163 17-163 (309)
18 1q77_A Hypothetical protein AQ 99.9 4.4E-24 1.5E-28 141.1 13.3 132 4-160 2-138 (138)
19 3ab8_A Putative uncharacterize 99.9 4.4E-25 1.5E-29 160.9 8.8 149 7-163 1-151 (268)
20 3olq_A Universal stress protei 99.9 2.6E-23 8.9E-28 154.9 15.0 144 5-163 155-307 (319)
21 3loq_A Universal stress protei 99.9 2.6E-23 9E-28 153.4 13.4 126 4-164 168-293 (294)
22 3mt0_A Uncharacterized protein 99.9 9.4E-24 3.2E-28 155.6 10.2 124 4-162 5-129 (290)
23 3cis_A Uncharacterized protein 99.9 6.9E-23 2.4E-27 152.2 14.2 137 4-162 169-307 (309)
24 3ab8_A Putative uncharacterize 99.8 1.7E-20 5.7E-25 136.6 10.8 116 5-160 153-268 (268)
25 2iel_A Hypothetical protein TT 97.1 0.025 8.5E-07 36.3 13.3 128 7-159 2-133 (138)
26 3a2k_A TRNA(Ile)-lysidine synt 96.2 0.028 9.5E-07 43.8 8.9 96 6-133 18-130 (464)
27 1wy5_A TILS, hypothetical UPF0 96.2 0.036 1.2E-06 40.9 8.8 94 6-132 24-135 (317)
28 1zun_A Sulfate adenylyltransfe 95.3 0.14 4.9E-06 37.9 9.1 94 6-134 46-158 (325)
29 4b4k_A N5-carboxyaminoimidazol 95.2 0.29 9.8E-06 32.9 9.3 69 86-163 38-110 (181)
30 3qjg_A Epidermin biosynthesis 94.9 0.036 1.2E-06 37.4 4.4 113 4-161 3-118 (175)
31 2ywx_A Phosphoribosylaminoimid 94.8 0.27 9.2E-06 32.4 8.3 67 86-161 15-82 (157)
32 4grd_A N5-CAIR mutase, phospho 94.7 0.28 9.6E-06 32.8 8.1 68 86-162 28-99 (173)
33 1xmp_A PURE, phosphoribosylami 94.5 0.36 1.2E-05 32.2 8.4 69 86-163 27-99 (170)
34 3trh_A Phosphoribosylaminoimid 94.5 0.38 1.3E-05 32.0 8.4 69 86-163 22-94 (169)
35 3kuu_A Phosphoribosylaminoimid 94.4 0.37 1.3E-05 32.2 8.3 69 86-163 28-100 (174)
36 3oow_A Phosphoribosylaminoimid 94.4 0.38 1.3E-05 31.9 8.3 69 86-163 21-93 (166)
37 1ni5_A Putative cell cycle pro 94.3 0.33 1.1E-05 37.4 9.1 40 6-50 13-53 (433)
38 3umv_A Deoxyribodipyrimidine p 94.0 1.1 3.7E-05 35.3 11.6 120 14-161 47-168 (506)
39 3ors_A N5-carboxyaminoimidazol 93.9 0.52 1.8E-05 31.2 8.0 69 86-163 19-91 (163)
40 1u11_A PURE (N5-carboxyaminoim 93.8 0.5 1.7E-05 31.8 8.1 69 86-163 37-109 (182)
41 3lp6_A Phosphoribosylaminoimid 93.8 0.51 1.7E-05 31.6 8.0 68 86-162 23-94 (174)
42 2xry_A Deoxyribodipyrimidine p 93.6 0.72 2.4E-05 36.0 9.9 114 16-161 48-161 (482)
43 2wq7_A RE11660P; lyase-DNA com 93.3 1.7 5.7E-05 34.5 11.8 128 8-161 30-161 (543)
44 1o4v_A Phosphoribosylaminoimid 93.1 0.59 2E-05 31.5 7.5 69 86-163 29-101 (183)
45 3g40_A Na-K-CL cotransporter; 93.1 0.38 1.3E-05 34.9 7.0 101 21-164 180-280 (294)
46 3rg8_A Phosphoribosylaminoimid 93.1 0.66 2.2E-05 30.6 7.6 68 86-162 18-90 (159)
47 2ejb_A Probable aromatic acid 92.6 0.77 2.6E-05 31.2 7.7 34 7-46 2-35 (189)
48 1sur_A PAPS reductase; assimil 92.4 1.7 5.7E-05 29.8 9.5 34 7-49 45-78 (215)
49 3g40_A Na-K-CL cotransporter; 92.0 2.6 9E-05 30.6 12.5 121 7-162 21-147 (294)
50 2hma_A Probable tRNA (5-methyl 90.8 2.3 7.9E-05 32.1 9.4 41 1-50 4-44 (376)
51 2oq2_A Phosphoadenosine phosph 90.5 3.1 0.00011 29.6 9.5 38 6-49 41-78 (261)
52 1owl_A Photolyase, deoxyribodi 90.4 2.8 9.4E-05 32.8 9.8 118 14-161 12-129 (484)
53 3tvs_A Cryptochrome-1; circadi 90.0 1.8 6.3E-05 34.3 8.5 120 14-160 13-135 (538)
54 1k92_A Argininosuccinate synth 89.9 2.9 9.9E-05 32.5 9.3 37 5-50 9-45 (455)
55 1np7_A DNA photolyase; protein 89.5 6.2 0.00021 30.8 12.9 130 7-161 6-137 (489)
56 3ih5_A Electron transfer flavo 89.2 1.3 4.3E-05 30.8 6.4 85 6-132 3-101 (217)
57 3kcq_A Phosphoribosylglycinami 89.2 3.9 0.00013 28.3 8.8 85 6-132 8-92 (215)
58 3bl5_A Queuosine biosynthesis 89.0 4 0.00014 27.8 11.1 36 6-50 3-38 (219)
59 1iv0_A Hypothetical protein; r 88.6 1.2 4E-05 26.9 5.1 52 109-161 38-93 (98)
60 2j4d_A Cryptochrome 3, cryptoc 87.2 9.5 0.00033 30.1 12.4 129 7-161 40-174 (525)
61 4ds3_A Phosphoribosylglycinami 87.1 5.7 0.0002 27.4 9.5 87 4-132 5-96 (209)
62 3fy4_A 6-4 photolyase; DNA rep 87.0 5.3 0.00018 31.7 9.3 128 7-160 5-139 (537)
63 2e0i_A 432AA long hypothetical 86.5 7.7 0.00026 29.9 9.8 116 14-161 10-126 (440)
64 2wsi_A FAD synthetase; transfe 85.8 2.9 9.9E-05 30.6 6.9 94 7-134 54-169 (306)
65 1o97_C Electron transferring f 84.2 9.3 0.00032 27.3 9.0 85 12-134 32-124 (264)
66 2h31_A Multifunctional protein 84.1 4.5 0.00015 31.1 7.3 68 86-162 281-353 (425)
67 1nu0_A Hypothetical protein YQ 83.9 1.7 5.9E-05 27.9 4.4 52 109-160 40-95 (138)
68 3da8_A Probable 5'-phosphoribo 83.6 8.9 0.0003 26.5 9.3 85 4-132 10-99 (215)
69 2p0y_A Hypothetical protein LP 83.1 1.9 6.6E-05 32.1 4.9 50 109-161 177-228 (341)
70 2nz2_A Argininosuccinate synth 82.9 14 0.00047 28.3 10.4 36 6-50 5-40 (413)
71 2ywb_A GMP synthase [glutamine 82.9 15 0.00051 28.8 10.2 34 7-49 210-243 (503)
72 3p9x_A Phosphoribosylglycinami 82.9 9.4 0.00032 26.3 10.3 84 7-132 3-91 (211)
73 3zqu_A Probable aromatic acid 82.7 2.2 7.4E-05 29.5 4.8 39 1-47 1-39 (209)
74 2o8v_A Phosphoadenosine phosph 82.7 10 0.00035 26.6 8.8 34 7-49 46-79 (252)
75 2ppv_A Uncharacterized protein 82.6 2.2 7.6E-05 31.6 5.0 51 109-162 166-218 (332)
76 2q7x_A UPF0052 protein SP_1565 81.8 2.3 7.7E-05 31.5 4.8 50 109-161 173-224 (326)
77 3nbm_A PTS system, lactose-spe 81.7 3.4 0.00012 25.3 4.9 62 87-161 24-86 (108)
78 2o2z_A Hypothetical protein; s 80.6 2.5 8.5E-05 31.3 4.7 51 109-162 167-219 (323)
79 1g63_A Epidermin modifying enz 80.6 2.2 7.5E-05 28.7 4.1 37 5-47 1-37 (181)
80 2qv7_A Diacylglycerol kinase D 79.3 7.8 0.00027 28.5 7.1 70 86-162 44-115 (337)
81 1vhx_A Putative holliday junct 79.1 1.6 5.5E-05 28.4 2.9 53 109-161 42-98 (150)
82 2dpl_A GMP synthetase, GMP syn 78.9 8.4 0.00029 28.1 7.1 36 7-50 21-56 (308)
83 1u3d_A Cryptochrome 1 apoprote 78.7 22 0.00075 27.9 12.3 123 8-161 13-138 (509)
84 1kor_A Argininosuccinate synth 78.6 20 0.00067 27.3 10.7 36 7-50 1-36 (400)
85 3s40_A Diacylglycerol kinase; 78.1 9.7 0.00033 27.6 7.2 68 87-162 29-98 (304)
86 1dnp_A DNA photolyase; DNA rep 78.1 6.6 0.00023 30.5 6.6 51 80-131 52-104 (471)
87 1jq5_A Glycerol dehydrogenase; 77.7 7.3 0.00025 29.1 6.6 69 85-162 46-119 (370)
88 3rjz_A N-type ATP pyrophosphat 77.4 7.3 0.00025 27.4 6.1 91 7-131 5-99 (237)
89 2j07_A Deoxyribodipyrimidine p 77.0 22 0.00074 27.1 9.1 74 80-161 48-121 (420)
90 1efp_B ETF, protein (electron 76.8 17 0.00059 25.7 9.1 81 15-134 35-125 (252)
91 1v6t_A Hypothetical UPF0271 pr 76.2 9.8 0.00033 27.0 6.4 103 11-131 33-145 (255)
92 3fni_A Putative diflavin flavo 76.1 7.4 0.00025 25.2 5.6 47 86-135 22-69 (159)
93 3hly_A Flavodoxin-like domain; 75.8 13 0.00046 23.9 8.1 46 87-135 19-64 (161)
94 2bon_A Lipid kinase; DAG kinas 75.7 18 0.00062 26.5 8.2 68 88-162 48-119 (332)
95 2ywr_A Phosphoribosylglycinami 75.4 17 0.00059 25.0 11.0 42 90-132 44-90 (216)
96 1vl2_A Argininosuccinate synth 74.8 26 0.0009 26.9 9.5 38 4-50 12-49 (421)
97 1vbk_A Hypothetical protein PH 74.6 19 0.00063 26.3 7.9 34 5-48 178-211 (307)
98 2dfa_A Hypothetical UPF0271 pr 74.3 9.4 0.00032 27.1 5.9 119 11-157 33-161 (250)
99 3tqi_A GMP synthase [glutamine 74.1 5.8 0.0002 31.3 5.4 35 7-49 231-265 (527)
100 3o1l_A Formyltetrahydrofolate 73.3 24 0.00083 25.7 10.1 84 5-132 104-191 (302)
101 1ccw_A Protein (glutamate muta 73.2 15 0.0005 23.2 7.2 66 90-159 24-91 (137)
102 1xw8_A UPF0271 protein YBGL; N 73.1 10 0.00034 26.9 5.8 118 12-157 29-156 (252)
103 2q5c_A NTRC family transcripti 72.4 10 0.00035 25.6 5.7 48 103-162 31-79 (196)
104 2l69_A Rossmann 2X3 fold prote 72.0 13 0.00044 22.0 6.7 34 86-120 90-123 (134)
105 1vp8_A Hypothetical protein AF 72.0 12 0.00041 25.5 5.7 74 84-159 30-104 (201)
106 2pju_A Propionate catabolism o 71.6 22 0.00077 24.6 8.2 62 88-162 27-91 (225)
107 2yxb_A Coenzyme B12-dependent 70.0 20 0.00067 23.3 7.4 65 90-159 39-106 (161)
108 2pg3_A Queuosine biosynthesis 70.0 24 0.00081 24.2 11.3 34 7-49 3-36 (232)
109 1qv9_A F420-dependent methylen 69.3 9.2 0.00032 27.0 4.8 44 114-161 56-99 (283)
110 3k32_A Uncharacterized protein 68.4 24 0.00083 23.7 7.7 37 5-50 5-41 (203)
111 1y80_A Predicted cobalamin bin 68.0 25 0.00086 23.7 7.1 64 92-159 111-177 (210)
112 1qzu_A Hypothetical protein MD 68.0 6.5 0.00022 27.0 4.0 39 4-47 17-55 (206)
113 2l2q_A PTS system, cellobiose- 67.9 16 0.00053 22.1 5.4 62 88-161 23-84 (109)
114 1meo_A Phosophoribosylglycinam 67.8 26 0.0009 23.9 11.3 84 7-132 1-89 (209)
115 3hv2_A Response regulator/HD d 67.3 20 0.00067 22.3 7.6 50 109-162 45-95 (153)
116 3d0c_A Dihydrodipicolinate syn 67.2 34 0.0012 24.9 8.4 62 97-160 81-144 (314)
117 4hs4_A Chromate reductase; tri 66.9 26 0.00089 23.6 7.9 43 1-49 1-47 (199)
118 2der_A TRNA-specific 2-thiouri 66.9 38 0.0013 25.5 12.0 36 5-49 16-51 (380)
119 3n0v_A Formyltetrahydrofolate 66.8 33 0.0011 24.7 10.7 84 5-132 89-176 (286)
120 2lpm_A Two-component response 66.8 18 0.00062 22.3 5.6 61 93-162 28-88 (123)
121 2ojp_A DHDPS, dihydrodipicolin 66.7 33 0.0011 24.6 8.2 48 114-161 88-135 (292)
122 2nwr_A 2-dehydro-3-deoxyphosph 66.5 24 0.00081 25.3 6.8 61 88-161 66-126 (267)
123 3i42_A Response regulator rece 66.5 18 0.00061 21.5 6.9 51 109-163 34-87 (127)
124 3lou_A Formyltetrahydrofolate 66.4 34 0.0012 24.7 10.4 84 5-132 94-181 (292)
125 3f6p_A Transcriptional regulat 66.2 18 0.00061 21.4 7.4 48 110-161 34-81 (120)
126 2v9d_A YAGE; dihydrodipicolini 65.6 39 0.0013 25.0 8.9 48 113-160 117-164 (343)
127 2ehh_A DHDPS, dihydrodipicolin 65.0 36 0.0012 24.5 8.3 47 114-160 87-133 (294)
128 3eod_A Protein HNR; response r 64.9 20 0.00067 21.4 7.2 50 110-163 39-89 (130)
129 3m5v_A DHDPS, dihydrodipicolin 64.8 37 0.0013 24.5 10.6 50 112-161 93-142 (301)
130 1qkk_A DCTD, C4-dicarboxylate 64.6 22 0.00077 22.0 6.1 49 109-161 34-83 (155)
131 2i2x_B MTAC, methyltransferase 64.4 34 0.0012 24.0 7.8 66 90-159 144-210 (258)
132 2rfg_A Dihydrodipicolinate syn 63.9 38 0.0013 24.4 8.7 48 113-160 86-133 (297)
133 2vc6_A MOSA, dihydrodipicolina 63.9 38 0.0013 24.3 8.7 63 97-160 69-133 (292)
134 2yxg_A DHDPS, dihydrodipicolin 63.9 38 0.0013 24.3 8.2 48 113-160 86-133 (289)
135 2r8w_A AGR_C_1641P; APC7498, d 63.8 41 0.0014 24.7 8.5 48 113-160 120-167 (332)
136 3to5_A CHEY homolog; alpha(5)b 63.8 24 0.00082 22.1 7.7 66 90-163 29-97 (134)
137 2gkg_A Response regulator homo 63.7 20 0.00067 21.0 6.6 48 109-159 36-86 (127)
138 1f6k_A N-acetylneuraminate lya 63.6 38 0.0013 24.3 7.6 48 113-160 90-137 (293)
139 1sbz_A Probable aromatic acid 63.6 15 0.00051 25.0 5.0 35 7-46 1-35 (197)
140 3pm6_A Putative fructose-bisph 63.5 12 0.0004 27.5 4.7 68 91-159 20-88 (306)
141 3en0_A Cyanophycinase; serine 63.0 6.3 0.00021 28.6 3.2 107 7-150 26-138 (291)
142 1xky_A Dihydrodipicolinate syn 62.9 40 0.0014 24.3 8.9 48 113-160 98-145 (301)
143 3a5f_A Dihydrodipicolinate syn 62.8 35 0.0012 24.5 7.2 48 113-160 87-134 (291)
144 1p3y_1 MRSD protein; flavoprot 62.7 9.4 0.00032 25.9 3.9 35 6-46 8-42 (194)
145 3grc_A Sensor protein, kinase; 62.7 23 0.00078 21.4 6.7 49 109-161 37-88 (140)
146 1o5k_A DHDPS, dihydrodipicolin 62.6 41 0.0014 24.4 8.9 48 113-160 98-145 (306)
147 2l69_A Rossmann 2X3 fold prote 62.3 7 0.00024 23.2 2.8 44 84-128 37-81 (134)
148 3auf_A Glycinamide ribonucleot 62.0 37 0.0013 23.6 10.9 42 90-132 65-111 (229)
149 2wkj_A N-acetylneuraminate lya 61.9 42 0.0014 24.3 7.5 48 113-160 97-145 (303)
150 3dm5_A SRP54, signal recogniti 61.7 53 0.0018 25.3 10.7 86 12-135 107-195 (443)
151 2x5e_A UPF0271 protein PA4511; 61.4 21 0.00071 25.3 5.5 122 11-157 39-170 (252)
152 2j48_A Two-component sensor ki 60.8 21 0.00073 20.4 7.9 50 110-163 33-85 (119)
153 2rjn_A Response regulator rece 60.3 27 0.00093 21.5 7.0 49 109-161 38-87 (154)
154 3l52_A Orotidine 5'-phosphate 60.3 35 0.0012 24.6 6.8 35 8-47 24-68 (284)
155 1of8_A Phospho-2-dehydro-3-deo 59.0 42 0.0014 25.3 7.1 126 7-161 67-203 (370)
156 3c3d_A 2-phospho-L-lactate tra 58.6 16 0.00054 26.9 4.7 48 109-161 172-221 (311)
157 3cpr_A Dihydrodipicolinate syn 58.5 49 0.0017 23.9 8.3 49 113-161 102-150 (304)
158 3cg4_A Response regulator rece 58.4 28 0.00095 21.0 7.8 50 109-162 38-90 (142)
159 2qr3_A Two-component system re 58.3 27 0.00094 20.9 6.3 50 109-161 34-88 (140)
160 1e2b_A Enzyme IIB-cellobiose; 58.2 28 0.00095 20.9 5.4 41 86-133 20-61 (106)
161 3elf_A Fructose-bisphosphate a 58.1 22 0.00076 26.5 5.5 74 89-163 12-97 (349)
162 3q94_A Fructose-bisphosphate a 57.8 16 0.00053 26.6 4.5 52 108-159 31-86 (288)
163 3obi_A Formyltetrahydrofolate 57.7 50 0.0017 23.8 7.3 85 5-132 88-176 (288)
164 3gxq_A Putative regulator of t 57.7 8.1 0.00028 19.3 2.1 25 101-125 12-37 (54)
165 1gvf_A Tagatose-bisphosphate a 57.4 10 0.00036 27.4 3.6 52 108-159 28-80 (286)
166 2b4a_A BH3024; flavodoxin-like 57.2 29 0.001 20.9 6.5 48 109-160 46-95 (138)
167 3cg0_A Response regulator rece 57.1 29 0.00099 20.8 8.2 51 109-162 41-91 (140)
168 3ezx_A MMCP 1, monomethylamine 56.8 40 0.0014 23.1 6.4 66 90-159 113-183 (215)
169 3f6c_A Positive transcription 56.3 29 0.001 20.6 7.0 48 112-163 36-84 (134)
170 1uf3_A Hypothetical protein TT 55.9 22 0.00077 23.7 5.0 7 43-49 7-13 (228)
171 2q9u_A A-type flavoprotein; fl 55.8 61 0.0021 24.1 8.1 49 84-135 272-320 (414)
172 3lqk_A Dipicolinate synthase s 55.7 12 0.00043 25.5 3.6 38 4-47 5-43 (201)
173 3na8_A Putative dihydrodipicol 54.9 59 0.002 23.7 8.8 50 112-161 109-158 (315)
174 2qjg_A Putative aldolase MJ040 54.9 47 0.0016 23.3 6.7 70 84-162 132-211 (273)
175 2q62_A ARSH; alpha/beta, flavo 54.6 27 0.00091 24.5 5.3 22 111-134 89-110 (247)
176 1ta9_A Glycerol dehydrogenase; 54.6 56 0.0019 25.2 7.5 68 85-162 106-178 (450)
177 2c5s_A THII, probable thiamine 53.9 70 0.0024 24.2 11.2 35 6-49 187-221 (413)
178 3p52_A NH(3)-dependent NAD(+) 53.2 56 0.0019 22.9 6.9 37 5-49 25-61 (249)
179 3h5i_A Response regulator/sens 52.2 37 0.0013 20.5 8.5 53 108-163 36-88 (140)
180 1efv_B Electron transfer flavo 52.2 14 0.00048 26.2 3.5 24 111-134 105-128 (255)
181 3qze_A DHDPS, dihydrodipicolin 52.1 65 0.0022 23.4 8.6 50 112-161 108-157 (314)
182 2amj_A Modulator of drug activ 52.0 42 0.0014 22.6 5.8 48 84-134 34-82 (204)
183 3gl9_A Response regulator; bet 51.9 35 0.0012 20.1 6.7 50 109-162 33-85 (122)
184 4f2d_A L-arabinose isomerase; 51.3 87 0.003 24.6 9.8 44 111-160 60-104 (500)
185 3tak_A DHDPS, dihydrodipicolin 50.8 66 0.0022 23.0 8.7 48 113-161 87-135 (291)
186 4dad_A Putative pilus assembly 50.6 40 0.0014 20.5 6.0 52 107-162 51-104 (146)
187 3ecs_A Translation initiation 50.6 30 0.001 25.4 5.1 60 92-160 167-230 (315)
188 1y5e_A Molybdenum cofactor bio 50.2 28 0.00095 22.8 4.5 40 89-129 36-79 (169)
189 3iwt_A 178AA long hypothetical 50.2 29 0.00099 22.8 4.7 41 88-129 44-88 (178)
190 3l21_A DHDPS, dihydrodipicolin 50.0 70 0.0024 23.1 8.6 50 112-161 100-149 (304)
191 3e96_A Dihydrodipicolinate syn 49.8 72 0.0025 23.2 7.1 47 114-160 98-144 (316)
192 3tqk_A Phospho-2-dehydro-3-deo 49.5 78 0.0027 23.6 9.1 130 7-162 49-186 (346)
193 3ce9_A Glycerol dehydrogenase; 49.3 26 0.0009 25.8 4.8 66 86-161 50-120 (354)
194 3gt7_A Sensor protein; structu 49.1 45 0.0015 20.6 7.9 50 109-162 38-90 (154)
195 2qxy_A Response regulator; reg 49.1 41 0.0014 20.2 7.0 49 109-162 35-84 (142)
196 3kl4_A SRP54, signal recogniti 48.8 89 0.003 24.0 8.8 22 114-135 171-192 (433)
197 3dff_A Teicoplanin pseudoaglyc 48.7 69 0.0024 22.7 10.9 49 111-159 137-185 (273)
198 2q8u_A Exonuclease, putative; 48.7 15 0.0005 26.8 3.3 11 41-51 18-28 (336)
199 2ohh_A Type A flavoprotein FPR 48.6 79 0.0027 23.3 9.2 47 85-134 273-319 (404)
200 3nhm_A Response regulator; pro 48.4 41 0.0014 19.9 5.3 51 109-163 34-87 (133)
201 2xxa_A Signal recognition part 48.4 89 0.0031 23.9 9.7 30 14-48 109-138 (433)
202 3l4e_A Uncharacterized peptida 48.3 22 0.00076 24.2 3.9 72 85-159 45-119 (206)
203 3flu_A DHDPS, dihydrodipicolin 48.3 74 0.0025 22.9 8.7 48 113-161 93-141 (297)
204 4e7p_A Response regulator; DNA 48.1 45 0.0015 20.4 7.6 54 105-162 49-103 (150)
205 1srr_A SPO0F, sporulation resp 48.0 40 0.0014 19.7 7.9 49 110-162 35-84 (124)
206 3kht_A Response regulator; PSI 47.7 44 0.0015 20.2 8.4 67 89-162 21-90 (144)
207 1zgz_A Torcad operon transcrip 47.4 40 0.0014 19.6 7.4 49 110-162 34-82 (122)
208 3r89_A Orotidine 5'-phosphate 47.3 78 0.0027 22.9 8.2 93 8-129 19-128 (290)
209 1w2w_B 5-methylthioribose-1-ph 47.0 26 0.00088 23.7 4.0 60 94-160 27-92 (191)
210 3si9_A DHDPS, dihydrodipicolin 46.9 81 0.0028 23.0 8.7 49 113-161 108-156 (315)
211 1jkx_A GART;, phosphoribosylgl 46.7 67 0.0023 21.9 11.5 42 90-132 43-89 (212)
212 1t57_A Conserved protein MTH16 46.7 24 0.00083 24.1 3.7 72 84-158 38-110 (206)
213 2is8_A Molybdopterin biosynthe 46.5 30 0.001 22.5 4.3 41 88-129 25-69 (164)
214 2qsj_A DNA-binding response re 46.4 49 0.0017 20.3 6.1 50 109-162 36-87 (154)
215 3b4u_A Dihydrodipicolinate syn 46.3 64 0.0022 23.2 6.3 47 113-160 89-140 (294)
216 3iv3_A Tagatose 1,6-diphosphat 46.1 88 0.003 23.1 12.5 85 77-162 140-254 (332)
217 2rdm_A Response regulator rece 45.9 44 0.0015 19.7 8.1 51 110-163 37-89 (132)
218 1use_A VAsp, vasodilator-stimu 45.7 29 0.00099 17.5 4.5 29 70-98 16-44 (45)
219 3nrb_A Formyltetrahydrofolate 45.6 82 0.0028 22.7 8.4 37 5-47 87-123 (287)
220 3mcu_A Dipicolinate synthase, 45.6 22 0.00074 24.4 3.5 37 5-47 4-41 (207)
221 2a5l_A Trp repressor binding p 45.5 53 0.0018 21.5 5.5 15 120-134 69-83 (200)
222 3n53_A Response regulator rece 45.5 48 0.0016 19.9 5.9 50 109-162 33-85 (140)
223 3rpe_A MDAB, modulator of drug 45.3 62 0.0021 22.2 5.9 47 85-134 48-95 (218)
224 3hdv_A Response regulator; PSI 45.2 47 0.0016 19.8 6.7 64 91-162 25-90 (136)
225 3eul_A Possible nitrate/nitrit 44.6 52 0.0018 20.1 7.4 52 108-163 47-99 (152)
226 3daq_A DHDPS, dihydrodipicolin 44.5 84 0.0029 22.5 8.1 49 112-161 87-136 (292)
227 1e5d_A Rubredoxin\:oxygen oxid 44.3 93 0.0032 22.9 8.1 46 86-134 270-315 (402)
228 3tqr_A Phosphoribosylglycinami 44.2 75 0.0026 21.8 10.0 88 1-132 1-93 (215)
229 3eb2_A Putative dihydrodipicol 44.2 87 0.003 22.5 9.4 64 97-162 73-139 (300)
230 1o2d_A Alcohol dehydrogenase, 44.2 62 0.0021 24.1 6.1 44 86-130 58-107 (371)
231 3t1i_A Double-strand break rep 43.5 50 0.0017 25.4 5.6 14 151-164 137-150 (431)
232 3rqi_A Response regulator prot 43.3 63 0.0022 20.7 6.8 51 109-163 38-89 (184)
233 3vzx_A Heptaprenylglyceryl pho 43.2 48 0.0016 23.1 5.0 47 113-162 22-68 (228)
234 3kbq_A Protein TA0487; structu 43.1 38 0.0013 22.4 4.3 42 87-129 26-69 (172)
235 1mkz_A Molybdenum cofactor bio 43.0 51 0.0017 21.6 5.0 41 88-129 32-76 (172)
236 3inp_A D-ribulose-phosphate 3- 42.9 47 0.0016 23.4 5.0 44 86-131 182-225 (246)
237 1xhf_A DYE resistance, aerobic 42.8 48 0.0017 19.2 7.9 50 109-162 34-83 (123)
238 2zay_A Response regulator rece 42.8 54 0.0019 19.8 6.5 50 109-162 39-91 (147)
239 3pzy_A MOG; ssgcid, seattle st 42.7 36 0.0012 22.2 4.2 40 88-129 31-73 (164)
240 1rrm_A Lactaldehyde reductase; 42.5 77 0.0026 23.6 6.5 45 85-130 47-97 (386)
241 1s8n_A Putative antiterminator 42.4 69 0.0024 20.9 8.0 48 110-161 46-93 (205)
242 3uhj_A Probable glycerol dehyd 42.4 35 0.0012 25.7 4.5 69 85-162 67-139 (387)
243 3b2n_A Uncharacterized protein 42.3 53 0.0018 19.5 6.2 50 109-162 36-86 (133)
244 3n9r_A Fructose-bisphosphate a 41.9 35 0.0012 25.0 4.2 51 109-159 28-80 (307)
245 1rvg_A Fructose-1,6-bisphospha 41.9 41 0.0014 24.6 4.6 50 109-159 28-78 (305)
246 2a9o_A Response regulator; ess 41.9 49 0.0017 19.0 8.0 48 111-162 34-81 (120)
247 1vr6_A Phospho-2-dehydro-3-deo 41.9 1.1E+02 0.0036 22.9 9.3 105 17-161 117-221 (350)
248 2isw_A Putative fructose-1,6-b 41.6 46 0.0016 24.6 4.9 69 90-159 10-81 (323)
249 2r91_A 2-keto-3-deoxy-(6-phosp 41.5 49 0.0017 23.6 5.1 49 113-161 81-130 (286)
250 1mvl_A PPC decarboxylase athal 41.0 41 0.0014 23.0 4.3 27 5-31 18-44 (209)
251 3cnb_A DNA-binding response re 40.9 57 0.0019 19.5 8.7 50 109-162 41-93 (143)
252 3snk_A Response regulator CHEY 40.8 48 0.0016 19.8 4.4 47 113-163 50-97 (135)
253 2yvq_A Carbamoyl-phosphate syn 40.7 67 0.0023 20.3 5.3 62 93-157 63-129 (143)
254 3lua_A Response regulator rece 40.7 58 0.002 19.5 6.0 51 109-162 36-90 (140)
255 3w01_A Heptaprenylglyceryl pho 40.7 53 0.0018 23.0 4.9 47 113-162 27-73 (235)
256 3m9w_A D-xylose-binding peripl 40.5 93 0.0032 21.8 9.2 70 85-161 20-91 (313)
257 2yvt_A Hypothetical protein AQ 40.3 70 0.0024 21.8 5.7 20 111-130 21-40 (260)
258 2qzj_A Two-component response 40.1 59 0.002 19.5 7.5 49 110-162 36-84 (136)
259 1gpm_A GMP synthetase, XMP ami 40.1 1.3E+02 0.0046 23.5 8.4 36 7-50 228-263 (525)
260 3kyj_B CHEY6 protein, putative 40.0 61 0.0021 19.6 6.0 49 109-161 46-95 (145)
261 2nuw_A 2-keto-3-deoxygluconate 40.0 50 0.0017 23.7 4.9 48 113-160 82-130 (288)
262 4fbk_A DNA repair and telomere 39.9 59 0.002 25.4 5.5 20 112-131 105-124 (472)
263 3rfq_A Pterin-4-alpha-carbinol 39.6 50 0.0017 22.1 4.5 42 87-129 52-96 (185)
264 3qw3_A Orotidine-5-phosphate d 39.6 81 0.0028 22.2 5.8 33 96-129 75-111 (255)
265 3ctl_A D-allulose-6-phosphate 39.5 86 0.003 21.7 5.9 43 87-131 155-198 (231)
266 3cz5_A Two-component response 39.4 65 0.0022 19.7 7.3 50 109-162 38-88 (153)
267 3cfy_A Putative LUXO repressor 39.3 62 0.0021 19.4 6.6 50 109-162 35-85 (137)
268 3e61_A Putative transcriptiona 39.2 90 0.0031 21.3 7.3 67 84-161 25-94 (277)
269 1w3i_A EDA, 2-keto-3-deoxy glu 39.2 50 0.0017 23.7 4.8 48 113-160 82-130 (293)
270 4f2g_A Otcase 1, ornithine car 39.1 1.1E+02 0.0038 22.3 7.5 30 1-30 1-31 (309)
271 3ctl_A D-allulose-6-phosphate 39.1 39 0.0013 23.4 4.1 43 86-131 95-137 (231)
272 3jte_A Response regulator rece 38.3 64 0.0022 19.3 7.8 48 112-163 37-87 (143)
273 1f76_A Dihydroorotate dehydrog 38.3 1.1E+02 0.0038 22.1 7.4 34 97-131 211-247 (336)
274 2fzv_A Putative arsenical resi 38.3 59 0.002 23.3 5.0 22 111-134 114-135 (279)
275 3ayv_A Putative uncharacterize 38.3 93 0.0032 21.2 6.8 81 19-122 74-154 (254)
276 1nmo_A Hypothetical protein YB 38.2 44 0.0015 23.4 4.3 52 111-162 175-244 (247)
277 3dbi_A Sugar-binding transcrip 38.0 1.1E+02 0.0037 21.8 9.1 69 85-161 81-151 (338)
278 2hy5_B Intracellular sulfur ox 38.0 64 0.0022 20.2 4.7 42 1-49 1-46 (136)
279 2gwr_A DNA-binding response re 37.9 90 0.0031 20.9 8.0 48 111-162 38-85 (238)
280 1mb3_A Cell division response 37.9 59 0.002 18.8 7.1 48 111-162 34-84 (124)
281 1vlj_A NADH-dependent butanol 37.8 1.1E+02 0.0036 23.1 6.6 42 86-130 61-110 (407)
282 1ii7_A MRE11 nuclease; RAD50, 37.6 88 0.003 22.6 6.0 22 86-110 29-50 (333)
283 2jba_A Phosphate regulon trans 37.3 61 0.0021 18.8 4.9 49 109-161 33-84 (127)
284 1dos_A Aldolase class II; lyas 37.2 45 0.0015 25.0 4.3 75 88-163 19-111 (358)
285 2bln_A Protein YFBG; transfera 37.1 1.1E+02 0.0038 22.1 6.4 41 89-132 45-85 (305)
286 2vzf_A NADH-dependent FMN redu 37.1 58 0.002 21.5 4.6 13 122-134 69-81 (197)
287 4e0q_A COP9 signalosome comple 37.0 67 0.0023 20.3 4.7 51 113-163 74-124 (141)
288 3o1i_D Periplasmic protein TOR 36.9 1E+02 0.0035 21.3 7.9 66 86-159 24-93 (304)
289 1rtt_A Conserved hypothetical 36.9 29 0.001 22.9 3.1 20 113-134 65-84 (193)
290 1t9k_A Probable methylthioribo 36.9 66 0.0023 23.9 5.2 61 93-160 204-268 (347)
291 3hzh_A Chemotaxis response reg 36.8 74 0.0025 19.6 7.3 50 109-162 68-120 (157)
292 1ycg_A Nitric oxide reductase; 36.8 1.2E+02 0.0042 22.2 7.5 47 85-134 268-314 (398)
293 3cu5_A Two component transcrip 36.7 70 0.0024 19.3 5.6 50 109-162 36-86 (141)
294 3hdg_A Uncharacterized protein 36.6 67 0.0023 19.1 7.9 50 110-163 39-89 (137)
295 3bfj_A 1,3-propanediol oxidore 36.5 98 0.0034 23.0 6.2 43 87-130 53-101 (387)
296 3u7r_A NADPH-dependent FMN red 36.3 72 0.0024 21.3 4.9 39 5-49 1-42 (190)
297 3t6k_A Response regulator rece 36.2 70 0.0024 19.1 7.7 49 110-162 36-87 (136)
298 1dc7_A NTRC, nitrogen regulati 35.9 44 0.0015 19.3 3.6 49 109-161 34-83 (124)
299 3jy6_A Transcriptional regulat 35.9 1E+02 0.0036 21.0 9.5 68 84-161 24-93 (276)
300 1jlj_A Gephyrin; globular alph 35.8 72 0.0025 21.3 4.9 40 89-129 39-85 (189)
301 5nul_A Flavodoxin; electron tr 35.8 75 0.0026 19.3 5.6 43 85-134 15-57 (138)
302 3qxc_A Dethiobiotin synthetase 35.7 47 0.0016 23.2 4.1 50 112-162 119-170 (242)
303 3egc_A Putative ribose operon 35.7 1.1E+02 0.0037 21.1 9.8 70 84-162 25-96 (291)
304 3zxs_A Cryptochrome B, rscryb; 35.6 1.3E+02 0.0046 23.7 6.9 71 82-162 65-140 (522)
305 3t8y_A CHEB, chemotaxis respon 35.6 80 0.0028 19.7 8.6 49 109-161 58-106 (164)
306 2g2c_A Putative molybdenum cof 35.5 43 0.0015 21.8 3.6 36 93-129 38-76 (167)
307 3mm4_A Histidine kinase homolo 35.3 95 0.0032 20.4 8.4 38 122-163 119-161 (206)
308 2oqr_A Sensory transduction pr 35.3 96 0.0033 20.5 7.5 48 110-161 36-83 (230)
309 3av0_A DNA double-strand break 35.2 30 0.001 25.8 3.2 11 41-51 20-30 (386)
310 3bul_A Methionine synthase; tr 35.1 1.2E+02 0.004 24.4 6.6 65 90-159 119-185 (579)
311 2pbq_A Molybdenum cofactor bio 35.1 78 0.0027 20.8 4.9 33 95-129 39-75 (178)
312 3lte_A Response regulator; str 35.0 70 0.0024 18.8 7.6 22 110-131 38-59 (132)
313 3l6u_A ABC-type sugar transpor 34.9 1.1E+02 0.0038 21.0 9.4 71 84-161 25-97 (293)
314 3av3_A Phosphoribosylglycinami 34.8 1.1E+02 0.0036 20.8 12.1 42 90-132 46-92 (212)
315 1mvo_A PHOP response regulator 34.5 72 0.0025 18.8 7.9 48 111-162 36-84 (136)
316 4fbw_A DNA repair protein RAD3 34.4 55 0.0019 25.0 4.5 13 151-163 118-130 (417)
317 3inp_A D-ribulose-phosphate 3- 34.4 45 0.0015 23.5 3.8 43 86-131 123-165 (246)
318 2pjk_A 178AA long hypothetical 34.2 86 0.0029 20.6 5.0 42 87-129 43-88 (178)
319 2ffh_A Protein (FFH); SRP54, s 34.1 1.6E+02 0.0053 22.5 10.6 30 12-47 105-134 (425)
320 3kto_A Response regulator rece 33.8 36 0.0012 20.5 3.0 51 110-163 38-90 (136)
321 1yio_A Response regulatory pro 33.7 97 0.0033 20.1 6.5 51 109-163 35-86 (208)
322 3r7f_A Aspartate carbamoyltran 33.6 66 0.0022 23.5 4.6 41 108-157 78-118 (304)
323 2zki_A 199AA long hypothetical 33.5 47 0.0016 21.8 3.7 43 1-50 1-43 (199)
324 3vk5_A MOEO5; TIM barrel, tran 33.5 57 0.0019 23.6 4.2 46 114-160 58-104 (286)
325 3ln7_A Glutathione biosynthesi 33.2 47 0.0016 27.6 4.2 24 108-131 432-455 (757)
326 3tdn_A FLR symmetric alpha-bet 33.2 74 0.0025 21.9 4.8 47 113-159 39-85 (247)
327 1a2o_A CHEB methylesterase; ba 33.1 1.4E+02 0.0049 21.8 7.4 50 109-162 36-85 (349)
328 3a10_A Response regulator; pho 33.0 70 0.0024 18.2 7.5 48 110-161 33-81 (116)
329 1jbe_A Chemotaxis protein CHEY 32.4 76 0.0026 18.5 7.1 50 109-162 36-88 (128)
330 3iz5_H 60S ribosomal protein L 32.4 68 0.0023 22.8 4.3 47 111-161 132-178 (258)
331 3q9s_A DNA-binding response re 32.3 1.2E+02 0.0041 20.7 7.4 51 109-163 68-118 (249)
332 3l49_A ABC sugar (ribose) tran 32.2 1.2E+02 0.0042 20.8 8.1 71 84-161 22-94 (291)
333 3txv_A Probable tagatose 6-pho 31.5 61 0.0021 25.1 4.3 52 109-160 32-92 (450)
334 1sqs_A Conserved hypothetical 31.5 1.2E+02 0.0041 20.7 5.7 21 112-134 71-91 (242)
335 2i0f_A 6,7-dimethyl-8-ribityll 31.4 1.1E+02 0.0037 19.9 8.6 76 82-158 27-115 (157)
336 3tho_B Exonuclease, putative; 31.3 67 0.0023 23.9 4.5 25 84-111 30-54 (379)
337 3rot_A ABC sugar transporter, 31.3 1.3E+02 0.0045 20.8 8.1 69 86-161 22-94 (297)
338 3c3m_A Response regulator rece 31.1 86 0.003 18.7 7.4 48 111-162 36-86 (138)
339 1xrs_B D-lysine 5,6-aminomutas 31.1 91 0.0031 22.2 4.9 24 109-132 167-190 (262)
340 2pln_A HP1043, response regula 31.1 85 0.0029 18.6 6.8 46 109-162 49-95 (137)
341 1uuy_A CNX1, molybdopterin bio 31.0 82 0.0028 20.4 4.5 32 97-129 43-78 (167)
342 2hmc_A AGR_L_411P, dihydrodipi 30.8 1.6E+02 0.0055 21.7 8.4 48 113-160 109-158 (344)
343 2ftp_A Hydroxymethylglutaryl-C 30.7 1.5E+02 0.0051 21.3 8.6 73 84-158 124-208 (302)
344 1h5y_A HISF; histidine biosynt 30.4 71 0.0024 21.7 4.3 49 112-160 157-205 (253)
345 3nkl_A UDP-D-quinovosamine 4-d 30.2 95 0.0033 18.9 5.1 19 112-130 55-73 (141)
346 3huu_A Transcription regulator 29.8 1.4E+02 0.0048 20.7 6.8 69 84-161 44-114 (305)
347 3m47_A Orotidine 5'-phosphate 29.8 1.4E+02 0.0047 20.5 6.7 33 6-48 12-44 (228)
348 1a3w_A Pyruvate kinase; allost 29.6 1E+02 0.0035 24.2 5.3 45 109-162 381-426 (500)
349 3cvo_A Methyltransferase-like 29.6 73 0.0025 21.6 4.1 45 86-131 64-131 (202)
350 1xng_A NH(3)-dependent NAD(+) 29.5 1.3E+02 0.0044 21.1 5.6 36 6-49 25-60 (268)
351 1dbw_A Transcriptional regulat 29.2 88 0.003 18.2 7.4 50 109-162 34-84 (126)
352 1k68_A Phytochrome response re 29.1 91 0.0031 18.3 7.7 68 88-162 17-94 (140)
353 4fe7_A Xylose operon regulator 29.0 1.8E+02 0.006 21.6 6.9 63 85-160 42-104 (412)
354 3qm3_A Fructose-bisphosphate a 28.6 57 0.002 24.4 3.6 56 108-163 42-109 (357)
355 1sg6_A Pentafunctional AROM po 28.5 1.9E+02 0.0063 21.7 7.3 42 112-161 90-139 (393)
356 3zwt_A Dihydroorotate dehydrog 28.5 1.8E+02 0.0063 21.6 8.4 35 96-131 219-256 (367)
357 1ys7_A Transcriptional regulat 28.4 1.3E+02 0.0044 19.8 7.8 49 110-162 39-88 (233)
358 3m6m_D Sensory/regulatory prot 28.4 1E+02 0.0035 18.6 8.0 21 111-131 47-67 (143)
359 3bzc_A TEX; helix-turn-helix, 28.3 57 0.002 27.2 3.9 49 112-161 373-421 (785)
360 3q0i_A Methionyl-tRNA formyltr 28.2 1.1E+02 0.0038 22.3 5.1 42 88-132 54-95 (318)
361 3o3m_A Alpha subunit 2-hydroxy 28.1 61 0.0021 24.5 3.8 54 109-162 321-374 (408)
362 3gv0_A Transcriptional regulat 28.0 1.5E+02 0.0051 20.4 8.6 69 84-161 27-97 (288)
363 3tva_A Xylose isomerase domain 28.0 1.5E+02 0.0052 20.5 5.8 77 18-122 99-175 (290)
364 3n0r_A Response regulator; sig 27.9 1.6E+02 0.0055 20.8 7.7 51 109-162 192-242 (286)
365 1tmy_A CHEY protein, TMY; chem 27.9 90 0.0031 17.8 8.0 49 110-162 35-84 (120)
366 1tqx_A D-ribulose-5-phosphate 27.7 1.5E+02 0.0052 20.4 5.8 53 92-145 109-161 (227)
367 3qw4_B UMP synthase; N-termina 27.5 2.1E+02 0.0072 22.0 7.2 92 6-129 14-112 (453)
368 3cu2_A Ribulose-5-phosphate 3- 27.4 1.4E+02 0.0048 20.7 5.4 44 86-131 174-219 (237)
369 3nq4_A 6,7-dimethyl-8-ribityll 27.3 1.3E+02 0.0045 19.5 7.0 77 82-158 27-114 (156)
370 2w6r_A Imidazole glycerol phos 27.2 1.1E+02 0.0037 21.2 4.8 18 112-129 33-50 (266)
371 2f6u_A GGGPS, (S)-3-O-geranylg 27.1 1E+02 0.0035 21.4 4.6 56 104-162 11-70 (234)
372 2fz5_A Flavodoxin; alpha/beta 27.0 1.1E+02 0.0036 18.4 7.6 41 86-133 17-57 (137)
373 4drs_A Pyruvate kinase; glycol 26.8 1.4E+02 0.0047 23.7 5.6 44 109-161 411-455 (526)
374 2pl1_A Transcriptional regulat 26.8 95 0.0032 17.7 7.9 50 109-162 31-81 (121)
375 3klo_A Transcriptional regulat 26.7 54 0.0018 21.9 3.1 51 108-162 40-92 (225)
376 3d6n_B Aspartate carbamoyltran 26.6 1.2E+02 0.0042 21.9 5.0 41 108-157 76-117 (291)
377 3vmk_A 3-isopropylmalate dehyd 26.6 52 0.0018 24.8 3.1 27 16-47 178-204 (375)
378 3gg8_A Pyruvate kinase; malari 26.6 1.4E+02 0.0049 23.5 5.7 44 109-161 396-440 (511)
379 3tqq_A Methionyl-tRNA formyltr 26.5 1.2E+02 0.0042 22.0 5.1 42 88-132 49-90 (314)
380 3khd_A Pyruvate kinase; malari 26.5 1.4E+02 0.0048 23.6 5.6 43 110-161 406-449 (520)
381 2y88_A Phosphoribosyl isomeras 26.4 85 0.0029 21.4 4.1 49 112-160 152-200 (244)
382 3crn_A Response regulator rece 26.4 1E+02 0.0036 18.1 8.0 48 111-162 36-84 (132)
383 2ark_A Flavodoxin; FMN, struct 26.4 1.4E+02 0.0046 19.4 5.8 13 122-134 52-64 (188)
384 3hqn_D Pyruvate kinase, PK; TI 26.4 1.5E+02 0.005 23.4 5.7 44 109-161 380-424 (499)
385 3r0j_A Possible two component 26.3 1.5E+02 0.0052 20.0 7.5 51 109-163 54-105 (250)
386 3miz_A Putative transcriptiona 26.3 1.1E+02 0.0038 21.2 4.8 65 86-160 33-99 (301)
387 2qvg_A Two component response 26.1 1.1E+02 0.0037 18.2 7.4 48 111-162 42-98 (143)
388 3qi7_A Putative transcriptiona 26.0 1.6E+02 0.0054 22.1 5.7 95 8-131 14-120 (371)
389 1c2y_A Protein (lumazine synth 25.9 1.4E+02 0.0048 19.4 6.3 77 82-158 28-113 (156)
390 3qk7_A Transcriptional regulat 25.9 1.7E+02 0.0057 20.3 9.9 69 84-161 27-96 (294)
391 1zco_A 2-dehydro-3-deoxyphosph 25.8 1.8E+02 0.006 20.5 10.4 106 16-161 33-138 (262)
392 1z7e_A Protein aRNA; rossmann 25.7 1.8E+02 0.0061 23.3 6.4 42 88-132 44-85 (660)
393 1zh2_A KDP operon transcriptio 25.7 99 0.0034 17.6 7.5 49 109-162 33-81 (121)
394 1ml4_A Aspartate transcarbamoy 25.7 1.3E+02 0.0045 21.9 5.1 40 108-157 87-126 (308)
395 3h1g_A Chemotaxis protein CHEY 25.6 1.1E+02 0.0037 18.0 7.6 52 108-163 37-91 (129)
396 2m1z_A LMO0427 protein; homolo 25.5 38 0.0013 20.5 1.8 43 88-133 24-68 (106)
397 3k4h_A Putative transcriptiona 25.5 1.6E+02 0.0056 20.1 8.0 68 85-161 31-100 (292)
398 1pg5_A Aspartate carbamoyltran 25.4 1.3E+02 0.0045 21.8 5.0 42 107-158 80-121 (299)
399 4a17_F RPL7A, 60S ribosomal pr 25.3 1.8E+02 0.0063 20.6 7.0 47 111-161 129-175 (255)
400 2fyw_A Conserved hypothetical 25.2 78 0.0027 22.4 3.8 29 101-129 38-66 (267)
401 1e0t_A Pyruvate kinase, PK; ph 25.2 1.3E+02 0.0046 23.4 5.3 43 110-161 358-401 (470)
402 3u1h_A 3-isopropylmalate dehyd 25.1 58 0.002 24.7 3.1 27 16-47 185-211 (390)
403 3tfw_A Putative O-methyltransf 25.1 86 0.0029 21.5 4.0 44 86-130 101-144 (248)
404 1cnz_A IPMDH, IMDH, protein (3 25.0 58 0.002 24.4 3.1 28 16-48 169-196 (363)
405 3dz1_A Dihydrodipicolinate syn 25.0 2E+02 0.0067 20.8 7.1 48 112-160 92-141 (313)
406 1wot_A Putative minimal nucleo 24.9 71 0.0024 18.5 3.0 53 103-160 27-79 (98)
407 3okf_A 3-dehydroquinate syntha 24.9 2.2E+02 0.0077 21.4 6.7 69 85-162 77-158 (390)
408 1di0_A Lumazine synthase; tran 24.8 1.5E+02 0.0051 19.3 5.5 78 82-159 25-112 (158)
409 1k66_A Phytochrome response re 24.5 1.2E+02 0.004 18.0 7.0 38 121-162 61-101 (149)
410 2xw6_A MGS, methylglyoxal synt 24.5 1.1E+02 0.0037 19.3 3.9 35 96-131 48-83 (134)
411 2ioy_A Periplasmic sugar-bindi 24.4 1.7E+02 0.0059 20.0 8.3 69 86-161 20-90 (283)
412 3of5_A Dethiobiotin synthetase 24.4 63 0.0021 22.1 3.1 26 6-31 4-31 (228)
413 1ydn_A Hydroxymethylglutaryl-C 24.4 1.9E+02 0.0066 20.5 9.0 73 84-158 120-204 (295)
414 3ovp_A Ribulose-phosphate 3-ep 24.4 98 0.0034 21.3 4.1 42 87-131 102-143 (228)
415 3fkr_A L-2-keto-3-deoxyarabona 24.4 2E+02 0.0069 20.7 8.6 49 112-161 93-145 (309)
416 1to6_A Glycerate kinase; glyce 24.3 1.2E+02 0.0042 22.8 4.8 37 122-160 278-316 (371)
417 3udu_A 3-isopropylmalate dehyd 24.3 46 0.0016 25.0 2.4 26 17-47 167-192 (361)
418 3psf_A Transcription elongatio 24.1 1.1E+02 0.0037 26.6 4.9 49 112-162 568-623 (1030)
419 3uug_A Multiple sugar-binding 24.1 1.9E+02 0.0064 20.3 9.2 70 85-161 21-92 (330)
420 2xdq_A Light-independent proto 24.1 47 0.0016 25.5 2.6 45 108-152 113-158 (460)
421 3kke_A LACI family transcripti 24.0 1.8E+02 0.0063 20.1 9.2 67 85-161 33-102 (303)
422 3tr6_A O-methyltransferase; ce 24.0 1.6E+02 0.0054 19.4 5.4 45 86-131 102-149 (225)
423 1wpw_A 3-isopropylmalate dehyd 23.8 64 0.0022 23.9 3.1 28 16-48 143-170 (336)
424 1a05_A IPMDH, IMDH, 3-isopropy 23.8 64 0.0022 24.2 3.1 27 16-47 164-190 (358)
425 3jvd_A Transcriptional regulat 23.7 1.7E+02 0.0059 20.8 5.5 62 85-161 82-144 (333)
426 1vlc_A 3-isopropylmalate dehyd 23.7 64 0.0022 24.2 3.1 27 16-47 173-199 (366)
427 2zsk_A PH1733, 226AA long hypo 23.6 73 0.0025 21.7 3.3 10 122-131 73-82 (226)
428 3qay_A Endolysin; amidase A/B 23.6 1.6E+02 0.0055 19.3 6.0 43 85-128 34-83 (180)
429 3jyf_A 2',3'-cyclic nucleotide 23.6 2.2E+02 0.0075 20.9 9.2 41 113-158 84-124 (339)
430 1fui_A L-fucose isomerase; ket 23.5 2.9E+02 0.0099 22.2 8.3 82 70-161 22-110 (591)
431 2y3z_A 3-isopropylmalate dehyd 23.4 66 0.0022 24.1 3.1 26 17-47 163-188 (359)
432 1b93_A Protein (methylglyoxal 23.3 1.6E+02 0.0053 19.1 5.4 35 96-131 56-91 (152)
433 1fmt_A Methionyl-tRNA FMet for 23.3 2.2E+02 0.0074 20.7 6.9 41 88-132 50-91 (314)
434 2goy_A Adenosine phosphosulfat 23.2 1.3E+02 0.0045 21.2 4.7 33 7-49 55-87 (275)
435 1p6q_A CHEY2; chemotaxis, sign 23.1 1.2E+02 0.004 17.6 8.3 51 108-162 37-90 (129)
436 2r48_A Phosphotransferase syst 23.1 44 0.0015 20.2 1.8 40 90-132 26-67 (106)
437 1vzw_A Phosphoribosyl isomeras 22.9 90 0.0031 21.3 3.7 50 111-160 148-197 (244)
438 8abp_A L-arabinose-binding pro 22.9 1.9E+02 0.0065 19.9 6.5 66 87-160 22-89 (306)
439 3rfo_A Methionyl-tRNA formyltr 22.9 1.7E+02 0.0059 21.3 5.3 43 88-133 51-93 (317)
440 3bbl_A Regulatory protein of L 22.9 1.9E+02 0.0065 19.8 7.6 67 86-161 27-95 (287)
441 3hbm_A UDP-sugar hydrolase; PS 22.9 2.1E+02 0.0071 20.3 6.0 34 101-134 48-81 (282)
442 2rgy_A Transcriptional regulat 22.8 1.9E+02 0.0065 19.9 8.3 68 85-161 26-98 (290)
443 2obx_A DMRL synthase 1, 6,7-di 22.8 1.6E+02 0.0056 19.1 5.7 77 83-159 27-113 (157)
444 3r8w_A 3-isopropylmalate dehyd 22.7 68 0.0023 24.5 3.1 27 16-47 206-232 (405)
445 1n8f_A DAHP synthetase; (beta/ 22.6 2.4E+02 0.0083 21.0 9.0 131 7-161 52-188 (350)
446 1vs1_A 3-deoxy-7-phosphoheptul 22.4 2.2E+02 0.0074 20.3 7.5 85 17-134 49-133 (276)
447 3g3k_A Glutamate receptor, ion 22.4 1.1E+02 0.0036 20.6 4.0 36 93-129 44-89 (259)
448 3g1w_A Sugar ABC transporter; 22.3 2E+02 0.0068 19.9 8.6 70 85-161 22-94 (305)
449 3lec_A NADB-rossmann superfami 22.3 1.1E+02 0.0038 21.1 4.0 45 84-132 56-100 (230)
450 3qfe_A Putative dihydrodipicol 22.2 2.3E+02 0.0078 20.5 8.9 51 112-163 96-149 (318)
451 1thf_D HISF protein; thermophI 22.2 1.5E+02 0.0052 20.2 4.8 50 111-160 153-202 (253)
452 3d03_A Phosphohydrolase; glyce 22.2 1.9E+02 0.0065 19.6 5.9 33 101-133 42-83 (274)
453 2kyr_A Fructose-like phosphotr 22.1 65 0.0022 19.7 2.4 44 87-132 26-70 (111)
454 3o74_A Fructose transport syst 22.1 1.9E+02 0.0064 19.5 9.3 70 84-161 19-90 (272)
455 1rvv_A Riboflavin synthase; tr 22.0 1.7E+02 0.0058 19.0 6.8 78 82-159 27-114 (154)
456 1tjy_A Sugar transport protein 22.0 2.1E+02 0.0072 20.1 7.5 67 88-161 24-93 (316)
457 3h75_A Periplasmic sugar-bindi 22.0 2.2E+02 0.0075 20.3 8.2 68 86-161 23-94 (350)
458 3h5o_A Transcriptional regulat 21.9 2.2E+02 0.0074 20.2 7.4 67 85-160 80-148 (339)
459 2z6i_A Trans-2-enoyl-ACP reduc 21.9 1.6E+02 0.0056 21.3 5.1 47 114-160 122-169 (332)
460 2r4q_A Phosphotransferase syst 21.7 44 0.0015 20.2 1.6 39 91-132 27-67 (106)
461 1x0l_A Homoisocitrate dehydrog 21.7 76 0.0026 23.5 3.2 29 16-48 143-171 (333)
462 3psi_A Transcription elongatio 21.7 1.3E+02 0.0043 26.7 4.9 49 112-162 565-620 (1219)
463 3c3k_A Alanine racemase; struc 21.6 2E+02 0.0069 19.7 7.5 67 85-161 26-94 (285)
464 3f4w_A Putative hexulose 6 pho 21.6 1.8E+02 0.0062 19.1 5.0 73 86-161 92-167 (211)
465 2fiq_A Putative tagatose 6-pho 21.5 1.3E+02 0.0045 23.0 4.5 47 109-155 25-78 (420)
466 2xij_A Methylmalonyl-COA mutas 21.4 3.6E+02 0.012 22.6 7.3 24 109-132 642-665 (762)
467 1jfl_A Aspartate racemase; alp 21.4 75 0.0026 21.6 3.0 20 115-134 67-86 (228)
468 4dik_A Flavoprotein; TM0755, e 21.3 2.3E+02 0.008 21.3 5.9 48 84-134 281-331 (410)
469 3hcw_A Maltose operon transcri 21.3 2.1E+02 0.0071 19.7 7.9 69 84-161 29-99 (295)
470 1thf_D HISF protein; thermophI 21.3 1.9E+02 0.0063 19.7 5.1 7 93-99 39-45 (253)
471 1qpz_A PURA, protein (purine n 21.3 2.2E+02 0.0077 20.1 8.7 68 85-160 76-145 (340)
472 3c3w_A Two component transcrip 21.3 1.9E+02 0.0063 19.1 6.0 50 109-162 34-84 (225)
473 1w0d_A 3-isopropylmalate dehyd 21.2 57 0.002 24.2 2.4 27 16-47 153-179 (337)
474 2owr_A UDG, uracil-DNA glycosy 21.1 1.2E+02 0.0042 20.9 3.9 55 83-143 138-192 (218)
475 3t05_A Pyruvate kinase, PK; te 21.1 2E+02 0.0068 23.3 5.6 43 110-161 380-423 (606)
476 3sr7_A Isopentenyl-diphosphate 21.1 2.5E+02 0.0087 20.9 6.0 45 87-133 196-241 (365)
477 3o3m_B Beta subunit 2-hydroxya 21.1 1.4E+02 0.0049 22.3 4.7 52 109-161 300-351 (385)
478 3tpf_A Otcase, ornithine carba 21.0 1.2E+02 0.0039 22.2 4.0 40 108-157 78-117 (307)
479 1vb5_A Translation initiation 21.0 2.3E+02 0.0078 20.1 7.5 38 122-160 177-218 (276)
480 3kjx_A Transcriptional regulat 21.0 2.3E+02 0.0078 20.1 7.8 67 84-159 85-153 (344)
481 3gr4_A Pyruvate kinase isozyme 20.9 1.7E+02 0.0057 23.4 5.1 43 110-161 431-474 (550)
482 1viz_A PCRB protein homolog; s 20.7 1.5E+02 0.0052 20.6 4.5 48 112-162 23-70 (240)
483 1req_A Methylmalonyl-COA mutas 20.7 2.9E+02 0.0098 23.0 6.5 24 109-132 634-657 (727)
484 3s81_A Putative aspartate race 20.7 1.1E+02 0.0038 21.7 3.8 36 115-158 92-127 (268)
485 3izc_H 60S ribosomal protein R 20.7 2.3E+02 0.008 20.1 5.9 45 111-160 136-181 (256)
486 2d1p_B TUSC, hypothetical UPF0 20.6 49 0.0017 20.1 1.7 37 7-49 2-42 (119)
487 3heb_A Response regulator rece 20.6 1.5E+02 0.0052 17.8 7.1 41 119-163 56-99 (152)
488 1t5b_A Acyl carrier protein ph 20.5 1.8E+02 0.0062 18.7 6.6 13 122-134 86-98 (201)
489 1tqj_A Ribulose-phosphate 3-ep 20.5 1.8E+02 0.0061 19.9 4.8 44 86-131 160-203 (230)
490 4a8t_A Putrescine carbamoyltra 20.4 1.2E+02 0.0042 22.4 4.1 40 108-157 105-144 (339)
491 3vkj_A Isopentenyl-diphosphate 20.4 2E+02 0.0069 21.4 5.3 46 87-133 177-222 (368)
492 2jk1_A HUPR, hydrogenase trans 20.4 1.5E+02 0.005 17.6 5.1 49 110-162 32-81 (139)
493 3eqz_A Response regulator; str 20.3 1.4E+02 0.0048 17.3 4.4 48 110-162 35-83 (135)
494 1o97_D Electron transferring f 20.3 78 0.0027 23.2 3.0 74 16-132 15-97 (320)
495 2fyw_A Conserved hypothetical 20.2 2.3E+02 0.0079 19.9 5.4 21 4-27 36-56 (267)
496 3cbg_A O-methyltransferase; cy 20.2 1.7E+02 0.0059 19.6 4.7 43 88-131 112-157 (232)
497 2ef0_A Ornithine carbamoyltran 20.2 1.2E+02 0.0041 22.0 3.9 41 108-158 87-127 (301)
498 3v7e_A Ribosome-associated pro 20.2 94 0.0032 17.5 2.8 18 113-130 18-35 (82)
499 2iks_A DNA-binding transcripti 20.2 2.2E+02 0.0075 19.5 8.8 69 85-161 38-108 (293)
500 1x92_A APC5045, phosphoheptose 20.0 95 0.0032 20.3 3.2 37 5-47 112-148 (199)
No 1
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=99.97 E-value=4.2e-31 Score=176.44 Aligned_cols=144 Identities=17% Similarity=0.284 Sum_probs=125.4
Q ss_pred CCCCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHH
Q 044140 2 GDQTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKR 81 (166)
Q Consensus 2 ~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
+++++++||||+|+|+.+..++++|+.+|+ .+++ +|+++||.+........ .........+...+.
T Consensus 1 s~~~~~~ILv~~D~s~~s~~al~~A~~la~-~~~a----~l~ll~v~~~~~~~~~~---------~~~~~~~~~~~~~~~ 66 (146)
T 3s3t_A 1 SNARYTNILVPVDSSDAAQAAFTEAVNIAQ-RHQA----NLTALYVVDDSAYHTPA---------LDPVLSELLDAEAAH 66 (146)
T ss_dssp -CCCCCEEEEECCSSHHHHHHHHHHHHHHH-HHTC----EEEEEEEEECCCCCCGG---------GHHHHHHHHHHHHHH
T ss_pred CCCccceEEEEcCCCHHHHHHHHHHHHHHH-hcCC----EEEEEEEecCccccccc---------cccccHHHHHHHHHH
Confidence 468899999999999999999999999999 8888 99999998865433111 111344555667778
Q ss_pred HHHHHHHHHHHHHhCCC-CcccEEeecCCchhHHHH-HHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEE
Q 044140 82 AQKVADKATSICAKREV-NDMPVHVMQGDPRNVMTE-AVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 82 ~~~~l~~~~~~~~~~~i-~~~~~~v~~g~~~~~I~~-~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 159 (166)
+++.++.+.+.+.+.|+ + +++.+..|++.+.|++ ++++.++||||||+++++.+.++++||++++++++++||||+|
T Consensus 67 ~~~~l~~~~~~~~~~g~~~-~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 67 AKDAMRQRQQFVATTSAPN-LKTEISYGIPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVAVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp HHHHHHHHHHHHTTSSCCC-CEEEEEEECHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCSSCHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHHHHHHHHhcCCcc-eEEEEecCChHHHHHHHHHhhcCCCEEEECCCCCCCcceEEEcchHHHHhccCCCCEEEe
Confidence 88889999999988899 7 9999999999999999 9999999999999999999999999999999999999999999
Q ss_pred c
Q 044140 160 K 160 (166)
Q Consensus 160 ~ 160 (166)
|
T Consensus 146 ~ 146 (146)
T 3s3t_A 146 R 146 (146)
T ss_dssp C
T ss_pred C
Confidence 7
No 2
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=99.97 E-value=4e-30 Score=174.59 Aligned_cols=155 Identities=17% Similarity=0.202 Sum_probs=122.5
Q ss_pred CCCCCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCC----CCcCCCCCC--CCCCCchhhHHHH
Q 044140 1 MGDQTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPP----SLLGLSGAG--QGSAGSAHVINLV 74 (166)
Q Consensus 1 m~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~----~~~~~~~~~--~~~~~~~~~~~~~ 74 (166)
|+ +++++||||+|+|+.+..++++|+.+|+ .+++ +|+++||.+... ....+.... ... ........+
T Consensus 1 M~-~~~~~ILv~vD~s~~s~~al~~a~~la~-~~~a----~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 73 (162)
T 1mjh_A 1 MS-VMYKKILYPTDFSETAEIALKHVKAFKT-LKAE----EVILLHVIDEREIKKRDIFSLLLGVAGLNK-SVEEFENEL 73 (162)
T ss_dssp ---CCCCEEEEECCSCHHHHHHHHHHHHTCC-SSCC----EEEEEEEEEGGGTC------------------CHHHHHHH
T ss_pred Cc-cccceEEEEeCCCHHHHHHHHHHHHHHh-hcCC----eEEEEEEecCcccccccccccccccccccc-chhhhHHHH
Confidence 55 3689999999999999999999999999 8888 999999987531 100110000 000 000012345
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCc
Q 044140 75 ELDTKKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSC 154 (166)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~ 154 (166)
.+...+.+++.++.+.+.+...|++ ++..+..|++.+.|++++++.++||||||+++++.+.++++||++++|+++++|
T Consensus 74 ~~~~~~~~~~~l~~~~~~~~~~g~~-~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~~GSv~~~vl~~~~~ 152 (162)
T 1mjh_A 74 KNKLTEEAKNKMENIKKELEDVGFK-VKDIIVVGIPHEEIVKIAEDEGVDIIIMGSHGKTNLKEILLGSVTENVIKKSNK 152 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCE-EEEEEEEECHHHHHHHHHHHTTCSEEEEESCCSSCCTTCSSCHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCc-eEEEEcCCCHHHHHHHHHHHcCCCEEEEcCCCCCCccceEecchHHHHHHhCCC
Confidence 5566777788888888888888999 999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEcCCC
Q 044140 155 TVMIVKMPK 163 (166)
Q Consensus 155 pVlvv~~~~ 163 (166)
||++||+..
T Consensus 153 pVlvv~~~~ 161 (162)
T 1mjh_A 153 PVLVVKRKN 161 (162)
T ss_dssp CEEEECCCC
T ss_pred CEEEEeCCC
Confidence 999999764
No 3
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=99.97 E-value=1.1e-29 Score=173.72 Aligned_cols=154 Identities=15% Similarity=0.101 Sum_probs=118.4
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCC--CCCCCchhhHHHHHHHHHHH
Q 044140 4 QTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAG--QGSAGSAHVINLVELDTKKR 81 (166)
Q Consensus 4 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 81 (166)
+++++||||+|+++.+..++++|+.+|+ .+++ +|+++||.+.....+...... +.. .......+.+...+.
T Consensus 3 ~m~~~ILv~vD~s~~s~~al~~A~~la~-~~~a----~l~ll~v~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 75 (170)
T 2dum_A 3 FMFRKVLFPTDFSEGAYRAVEVFEKRNK-MEVG----EVILLHVIDEGTLEELMDGYSFFYDN--AEIELKDIKEKLKEE 75 (170)
T ss_dssp -CCSEEEEECCSSHHHHHHHHHHHHHCC-SCCS----EEEEEEEEETTGGGCCC--------------CCTTSHHHHHHH
T ss_pred cccceEEEEecCCHHHHHHHHHHHHHHH-hcCC----EEEEEEEecCcccccccccccccccc--ccccHHHHHHHHHHH
Confidence 4689999999999999999999999999 8888 999999987543221110000 000 000001223445566
Q ss_pred HHHHHHHHHHHHHhCCCCcccE--EeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEE
Q 044140 82 AQKVADKATSICAKREVNDMPV--HVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 82 ~~~~l~~~~~~~~~~~i~~~~~--~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 159 (166)
+++.++.+.+.+...|++ +++ .+..|++.+.|++++++.++||||||+++++.+.++++||++++|+++++||||+|
T Consensus 76 ~~~~l~~~~~~~~~~g~~-~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~~Gsv~~~vl~~~~~PVlvv 154 (170)
T 2dum_A 76 ASRKLQEKAEEVKRAFRA-KNVRTIIRFGIPWDEIVKVAEEENVSLIILPSRGKLSLSHEFLGSTVMRVLRKTKKPVLII 154 (170)
T ss_dssp HHHHHHHHHHHHHHHTTC-SEEEEEEEEECHHHHHHHHHHHTTCSEEEEESCCCCC--TTCCCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHHcCCc-eeeeeEEecCChHHHHHHHHHHcCCCEEEECCCCCCccccceechHHHHHHHhCCCCEEEE
Confidence 677778888887778999 888 88899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 044140 160 KMPKSK 165 (166)
Q Consensus 160 ~~~~~~ 165 (166)
|.....
T Consensus 155 ~~~~~~ 160 (170)
T 2dum_A 155 KEVDEN 160 (170)
T ss_dssp CCCCCC
T ss_pred ccCCcc
Confidence 976543
No 4
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=99.97 E-value=1.5e-29 Score=170.80 Aligned_cols=141 Identities=18% Similarity=0.246 Sum_probs=119.5
Q ss_pred CCCCCEEEEEEc--CChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHH
Q 044140 3 DQTKPIMMVAID--DSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKK 80 (166)
Q Consensus 3 ~~~~~~Ilv~vd--~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
.+++++||||+| +|+.+..++++|+.+|+ .+++ +|+++||.+........ .......+...+
T Consensus 12 ~~~~~~ILv~vD~~~s~~s~~al~~a~~la~-~~~a----~l~ll~v~~~~~~~~~~-----------~~~~~~~~~~~~ 75 (156)
T 3fg9_A 12 PLVYRRILLTVDEDDNTSSERAFRYATTLAH-DYDV----PLGICSVLESEDINIFD-----------SLTPSKIQAKRK 75 (156)
T ss_dssp CCCCC-EEEECCSCCCHHHHHHHHHHHHHHH-HHTC----CEEEEEEECCCCTTCCC-----------SSHHHHHHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHH-hcCC----EEEEEEEEeCCCccccc-----------cCCHHHHHHHHH
Confidence 478999999999 99999999999999999 8888 99999999865432111 112345566677
Q ss_pred HHHHHHHHHHHHHHhCCCCcccEEeec-CCchhHHHHH-HhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEE
Q 044140 81 RAQKVADKATSICAKREVNDMPVHVMQ-GDPRNVMTEA-VERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMI 158 (166)
Q Consensus 81 ~~~~~l~~~~~~~~~~~i~~~~~~v~~-g~~~~~I~~~-a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 158 (166)
.+++.++.+.+.+.+.|+..+++++.. |++.++|+++ +++.++||||||+++++.+. .++||++++|+++++|||++
T Consensus 76 ~~~~~l~~~~~~~~~~g~~~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~~Gs~~~~vl~~a~~PVlv 154 (156)
T 3fg9_A 76 HVEDVVAEYVQLAEQRGVNQVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KIAGAIGPRLARKAPISVIV 154 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SSCSCHHHHHHHHCSSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCCCCCccc-eeecchHHHHHHhCCCCEEE
Confidence 778888888888888899328899999 9999999999 99999999999999998887 58999999999999999999
Q ss_pred Ec
Q 044140 159 VK 160 (166)
Q Consensus 159 v~ 160 (166)
||
T Consensus 155 V~ 156 (156)
T 3fg9_A 155 VR 156 (156)
T ss_dssp EC
T ss_pred eC
Confidence 97
No 5
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=99.96 E-value=2.6e-30 Score=172.66 Aligned_cols=144 Identities=20% Similarity=0.245 Sum_probs=118.4
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 044140 5 TKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQK 84 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (166)
|+++||||+|+|+.+..++++|+.+|+ .+++ +|+++||.+........... ......+...+...+.+++
T Consensus 1 M~~~ILv~vD~s~~s~~al~~A~~la~-~~~a----~l~ll~v~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 70 (147)
T 3hgm_A 1 MFNRIMVPVDGSKGAVKALEKGVGLQQ-LTGA----ELYILCVFKHHSLLEASLSM-----ARPEQLDIPDDALKDYATE 70 (147)
T ss_dssp CCSEEEEECCSBHHHHHHHHHHHHHHH-HHCC----EEEEEEEECCHHHHHHTBSS-----CCCGGGCCCTTHHHHHHHH
T ss_pred CCceEEEEeCCCHHHHHHHHHHHHHHH-hcCC----EEEEEEEecCcccccccccc-----cChhhhhhHHHHHHHHHHH
Confidence 589999999999999999999999999 8888 99999998764311111100 0111111223445667777
Q ss_pred HHHHHHHHHHhCCCCcc---cEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEE
Q 044140 85 VADKATSICAKREVNDM---PVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~---~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 159 (166)
.++.+.+.+.+.|++ + +..+..|++.+.|++++++.++||||||+++++.+.++++||++++++++++|||++|
T Consensus 71 ~l~~~~~~~~~~g~~-~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvV 147 (147)
T 3hgm_A 71 IAVQAKTRATELGVP-ADKVRAFVKGGRPSRTIVRFARKRECDLVVIGAQGTNGDKSLLLGSVAQRVAGSAHCPVLVV 147 (147)
T ss_dssp HHHHHHHHHHHTTCC-GGGEEEEEEESCHHHHHHHHHHHTTCSEEEECSSCTTCCSCCCCCHHHHHHHHHCSSCEEEC
T ss_pred HHHHHHHHHHhcCCC-ccceEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCccccceeeccHHHHHHhhCCCCEEEC
Confidence 888888888888998 8 8899999999999999999999999999999999999999999999999999999986
No 6
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=99.96 E-value=1.2e-28 Score=163.02 Aligned_cols=136 Identities=21% Similarity=0.268 Sum_probs=117.3
Q ss_pred CCEEEEEEcCChhHHHHHHHHHHhc-CCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHH-HHHH
Q 044140 6 KPIMMVAIDDSNHSYYALEWALDYF-FPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTK-KRAQ 83 (166)
Q Consensus 6 ~~~Ilv~vd~s~~s~~al~~a~~la-~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 83 (166)
+++||||+|+|+.+..++++|+.+| + .+++ +|+++||.+....... ......+..+... +.++
T Consensus 1 ~~~ILv~~D~s~~s~~al~~a~~la~~-~~~a----~l~ll~v~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 65 (138)
T 3idf_A 1 MKKLLFAIDDTEACERAAQYILDMFGK-DADC----TLTLIHVKPEFMLYGE----------AVLAAYDEIEMKEEEKAK 65 (138)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHTT-CTTE----EEEEEEEECCCCCCHH----------HHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHhcc-CCCC----EEEEEEEecCCCcccc----------cccCcHHHHHHHHHHHHH
Confidence 4899999999999999999999999 8 7887 9999999886543211 1112233445556 7788
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
+.++++.+.+.+.|++ +++.+..|++.+.|+++++ ++||||||+++++.+.+++ ||++++++++++||||+||
T Consensus 66 ~~l~~~~~~~~~~g~~-~~~~v~~g~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~-Gs~~~~vl~~~~~pVlvv~ 138 (138)
T 3idf_A 66 LLTQKFSTFFTEKGIN-PFVVIKEGEPVEMVLEEAK--DYNLLIIGSSENSFLNKIF-ASHQDDFIQKAPIPVLIVK 138 (138)
T ss_dssp HHHHHHHHHHHTTTCC-CEEEEEESCHHHHHHHHHT--TCSEEEEECCTTSTTSSCC-CCTTCHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHHCCCC-eEEEEecCChHHHHHHHHh--cCCEEEEeCCCcchHHHHh-CcHHHHHHhcCCCCEEEeC
Confidence 8889999999989999 9999999999999999999 9999999999999999999 9999999999999999997
No 7
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=99.96 E-value=6.4e-29 Score=166.59 Aligned_cols=145 Identities=18% Similarity=0.227 Sum_probs=101.6
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCc-CCCCCCCCCCCchhhHHHHHHHHHHHH
Q 044140 4 QTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLL-GLSGAGQGSAGSAHVINLVELDTKKRA 82 (166)
Q Consensus 4 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
|++++||||+|+|+.+..++++|+.+|+ .+++ +|+++||.+...... .+... .........+...+.+
T Consensus 4 ~~~~~ILv~vD~s~~s~~al~~a~~la~-~~~a----~l~ll~v~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 72 (150)
T 3tnj_A 4 SVYHHILLAVDFSSEDSQVVQKVRNLAS-QIGA----RLSLIHVLDNIPMPDTPYGTA------IPLDTETTYDAMLDVE 72 (150)
T ss_dssp CCCSEEEEECCCSTTHHHHHHHHHHHHH-HHTC----EEEEEEEEC--------CTTC------CCSSSCCCHHHHHHHH
T ss_pred CccceEEEEeCCCHHHHHHHHHHHHHHh-hcCC----EEEEEEEEcCccccccccccc------cCcCHHHHHHHHHHHH
Confidence 5689999999999999999999999999 8888 999999987654310 01100 0000111223334444
Q ss_pred HHHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 83 QKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 83 ~~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
++.++.+.+ +.|++.++..+..|++.+.|+++++++++||||||+++++.+. +++||++++++++++|||++||++
T Consensus 73 ~~~l~~~~~---~~~~~~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~~Gs~~~~vl~~~~~pVlvv~~~ 148 (150)
T 3tnj_A 73 KQKLSQIGN---TLGIDPAHRWLVWGEPREEIIRIAEQENVDLIVVGSHGRHGLA-LLLGSTANSVLHYAKCDVLAVRLR 148 (150)
T ss_dssp HHHHHHHHH---HHTCCGGGEEEEESCHHHHHHHHHHHTTCSEEEEEEC---------CCCHHHHHHHHCSSEEEEEECC
T ss_pred HHHHHHHHH---HcCCCcceEEEecCCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eEecchHHHHHHhCCCCEEEEeCC
Confidence 444444433 3366634788899999999999999999999999999999998 999999999999999999999986
Q ss_pred C
Q 044140 163 K 163 (166)
Q Consensus 163 ~ 163 (166)
.
T Consensus 149 ~ 149 (150)
T 3tnj_A 149 D 149 (150)
T ss_dssp C
T ss_pred C
Confidence 4
No 8
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=99.96 E-value=1.1e-28 Score=169.59 Aligned_cols=153 Identities=23% Similarity=0.405 Sum_probs=108.6
Q ss_pred CCCCCEEEEEEcCCh---------hHHHHHHHHHHhcCCC--CCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhH
Q 044140 3 DQTKPIMMVAIDDSN---------HSYYALEWALDYFFPP--FAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVI 71 (166)
Q Consensus 3 ~~~~~~Ilv~vd~s~---------~s~~al~~a~~la~~~--~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~ 71 (166)
...+++||||+|+|+ .+..++++|+.++.+. +++ +|+++||.+.....+......+ ......
T Consensus 2 ~~~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a----~l~ll~v~~~~~~~~~~~~~~~---~~~~~~ 74 (175)
T 2gm3_A 2 GSEPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDF----KILLLHVQVVDEDGFDDVDSIY---ASPEDF 74 (175)
T ss_dssp ---CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSE----EEEEEEEEC----------CCC---CSHHHH
T ss_pred CCCccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCC----EEEEEEEeeccccccccccccc---CCHHHH
Confidence 456899999999999 9999999999987414 466 9999999864332111000000 112223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc
Q 044140 72 NLVELDTKKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH 151 (166)
Q Consensus 72 ~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~ 151 (166)
..+.+...+.+++.++.+.+.+...|++ +++++..|++.+.|++++++.++||||||+++++.+.++++||++++|+++
T Consensus 75 ~~~~~~~~~~~~~~l~~~~~~~~~~g~~-~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~~Gsva~~vl~~ 153 (175)
T 2gm3_A 75 RDMRQSNKAKGLHLLEFFVNKCHEIGVG-CEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGRFQKVFVGTVSAFCVKH 153 (175)
T ss_dssp HHHTTSHHHHHHHHHHHHHHHHHHHTCE-EEEEEEESCHHHHHHHHHHHHCCSEEEEEECCCC--------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCc-eEEEEecCCHHHHHHHHHHHhCCCEEEEeCCCCChhhhhhcCchHHHHHhC
Confidence 3333344556667788888888888999 999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEcCCC
Q 044140 152 CSCTVMIVKMPK 163 (166)
Q Consensus 152 ~~~pVlvv~~~~ 163 (166)
++||||+||...
T Consensus 154 a~~pVlvv~~~~ 165 (175)
T 2gm3_A 154 AECPVMTIKRNA 165 (175)
T ss_dssp CSSCEEEEECCG
T ss_pred CCCCEEEEcCCc
Confidence 999999999753
No 9
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=99.96 E-value=1.1e-28 Score=163.15 Aligned_cols=136 Identities=24% Similarity=0.334 Sum_probs=107.2
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 044140 5 TKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQK 84 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (166)
|+++||||+|+|+.+..++++|+.+|+ .+++ +|+++||.++... .+.. .. ...+.+...+.+++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~-~~~a----~l~ll~v~~~~~~--~~~~------~~---~~~~~~~~~~~~~~ 64 (137)
T 2z08_A 1 MFKTILLAYDGSEHARRAAEVAKAEAE-AHGA----RLIVVHAYEPVPD--YLGE------PF---FEEALRRRLERAEG 64 (137)
T ss_dssp CCSEEEEECCSSHHHHHHHHHHHHHHH-HHTC----EEEEEEEECC-------------------------CHHHHHHHH
T ss_pred CcceEEEEeCCCHHHHHHHHHHHHHHh-hcCC----EEEEEEEecCCCc--cccc------cc---hHHHHHHHHHHHHH
Confidence 479999999999999999999999999 8888 9999999874321 1110 00 01122333444555
Q ss_pred HHHHHHHHHHhCCC-CcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 85 VADKATSICAKREV-NDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 85 ~l~~~~~~~~~~~i-~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.++.+.+. .|+ + +++.+..|++.+.|++++++.++||||||+++++.+.++++||++++++++++|||++||
T Consensus 65 ~l~~~~~~---~g~~~-~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pVlvv~ 137 (137)
T 2z08_A 65 VLEEARAL---TGVPK-EDALLLEGVPAEAILQAARAEKADLIVMGTRGLGALGSLFLGSQSQRVVAEAPCPVLLVR 137 (137)
T ss_dssp HHHHHHHH---HCCCG-GGEEEEESSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSSSCHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHH---cCCCc-cEEEEEecCHHHHHHHHHHHcCCCEEEECCCCCchhhhhhhccHHHHHHhcCCCCEEEeC
Confidence 55554443 588 7 899999999999999999999999999999999999999999999999999999999997
No 10
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=99.96 E-value=1.5e-28 Score=166.03 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=113.9
Q ss_pred CCCCCEEEEEEcC-ChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHH
Q 044140 3 DQTKPIMMVAIDD-SNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKR 81 (166)
Q Consensus 3 ~~~~~~Ilv~vd~-s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
.|++++||||+|+ |+.+..++++|+.+|+ .+++ +|+++||.+..... . +...+.
T Consensus 21 ~mm~~~ILv~vD~~s~~s~~al~~A~~la~-~~~a----~l~llhV~~~~~~~------------~--------~~~~~~ 75 (155)
T 3dlo_A 21 GMIYMPIVVAVDKKSDRAERVLRFAAEEAR-LRGV----PVYVVHSLPGGGRT------------K--------DEDIIE 75 (155)
T ss_dssp -CCCCCEEEECCSSSHHHHHHHHHHHHHHH-HHTC----CEEEEEEECCSTTS------------C--------HHHHHH
T ss_pred ccccCeEEEEECCCCHHHHHHHHHHHHHHH-hcCC----EEEEEEEEcCCCcc------------c--------HHHHHH
Confidence 4789999999999 9999999999999999 8888 99999998753211 1 234455
Q ss_pred HHHHHHHHHHHHHhCCCCcccEE--eecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEE
Q 044140 82 AQKVADKATSICAKREVNDMPVH--VMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 82 ~~~~l~~~~~~~~~~~i~~~~~~--v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 159 (166)
+++.++.+.+.+.+.|++ +++. +..|++.++|++++++.++||||||+++++.+.++++||++++|+++++||||+|
T Consensus 76 ~~~~l~~~~~~~~~~g~~-~~~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 76 AKETLSWAVSIIRKEGAE-GEEHLLVRGKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLIFGSVARDVILKANKPVICI 154 (155)
T ss_dssp HHHHHHHHHHHHHHTTCC-EEEEEEESSSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEECCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHHhcCCC-ceEEEEecCCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEEeccHHHHHHHhCCCCEEEe
Confidence 667778888888888888 7754 5569999999999999999999999999999999999999999999999999998
Q ss_pred c
Q 044140 160 K 160 (166)
Q Consensus 160 ~ 160 (166)
+
T Consensus 155 r 155 (155)
T 3dlo_A 155 K 155 (155)
T ss_dssp C
T ss_pred C
Confidence 6
No 11
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=99.96 E-value=5.3e-28 Score=164.65 Aligned_cols=145 Identities=14% Similarity=0.174 Sum_probs=111.2
Q ss_pred CCCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEE--EeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHH
Q 044140 3 DQTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLI--HARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKK 80 (166)
Q Consensus 3 ~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
..++++||||+|+|+.+..++++|+.+|+ +++ +|+++ ||.+......... . ....+.+...+
T Consensus 14 ~~~~~~ILv~vD~s~~s~~al~~A~~lA~--~~a----~l~ll~a~v~~~~~~~~~~~--------~--~~~~~~~~~~~ 77 (163)
T 1tq8_A 14 LSAYKTVVVGTDGSDSSMRAVDRAAQIAG--ADA----KLIIASAYLPQHEDARAADI--------L--KDESYKVTGTA 77 (163)
T ss_dssp CCCCCEEEEECCSSHHHHHHHHHHHHHHT--TTS----EEEEEEECCC------------------------------CC
T ss_pred cccCCEEEEEcCCCHHHHHHHHHHHHHhC--CCC----EEEEEEeeeccCcccccccc--------c--ccHHHHHHHHH
Confidence 35789999999999999999999999998 567 99999 8765433210000 0 01122233445
Q ss_pred HHHHHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 81 RAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 81 ~~~~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.+++.++.+.+.+...|++.+++.+..|++.++|++++++.++||||||+++++.+.++++||++++|+++++|||++||
T Consensus 78 ~~~~~l~~~~~~~~~~gv~~v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~lGSva~~vl~~a~~PVlvV~ 157 (163)
T 1tq8_A 78 PIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGLSTIAGRLLGSVPANVSRRAKVDVLIVH 157 (163)
T ss_dssp THHHHHHHHHHHHHTTTCCEEEEEEECSSHHHHHHHHHHHTTCSEEEEECCCCCSHHHHHTBBHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEEecCCHHHHHHHHHHhcCCCEEEECCCCCCcccceeeccHHHHHHHhCCCCEEEEe
Confidence 56677778888887777754778888999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q 044140 161 MPK 163 (166)
Q Consensus 161 ~~~ 163 (166)
++.
T Consensus 158 ~~~ 160 (163)
T 1tq8_A 158 TTE 160 (163)
T ss_dssp CC-
T ss_pred CCC
Confidence 764
No 12
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=99.94 E-value=1.5e-27 Score=158.53 Aligned_cols=138 Identities=17% Similarity=0.271 Sum_probs=105.2
Q ss_pred CEEEEEEcCChh--HHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 044140 7 PIMMVAIDDSNH--SYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQK 84 (166)
Q Consensus 7 ~~Ilv~vd~s~~--s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (166)
++||||+|+|+. +..++++|+.+|+ .+++ +|+++||.+........... .... .+...+..++
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~-~~~a----~l~ll~v~~~~~~~~~~~~~------~~~~----~~~~~~~~~~ 66 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEAR-IDDA----EVHFLTVIPSLPYYASLGMA------YTAE----LPGMDELREG 66 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHH-HHTC----EEEEEEEECC--------------------------CHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHH-hcCC----eEEEEEEecCCccccccccc------ccch----hhhHHHHHHH
Confidence 799999999999 9999999999999 8888 99999999865432211110 0000 1223334445
Q ss_pred HHHHHHHHHHhCCCCc--ccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 85 VADKATSICAKREVND--MPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~--~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.++.+.+.+.+.+++. +++.+..|++.+.|++++++.++||||||+++ +++.++++||++++++++++||||+||
T Consensus 67 ~~~~l~~~~~~~~~~~~~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~~~Gs~~~~v~~~~~~pVlvv~ 143 (143)
T 3fdx_A 67 SETQLKEIAKKFSIPEDRMHFHVAEGSPKDKILALAKSLPADLVIIASHR-PDITTYLLGSNAAAVVRHAECSVLVVR 143 (143)
T ss_dssp HHHHHHHHHTTSCCCGGGEEEEEEESCHHHHHHHHHHHTTCSEEEEESSC-TTCCSCSSCHHHHHHHHHCSSEEEEEC
T ss_pred HHHHHHHHHHHcCCCCCceEEEEEecChHHHHHHHHHHhCCCEEEEeCCC-CCCeeeeeccHHHHHHHhCCCCEEEeC
Confidence 5566666666665441 57788899999999999999999999999995 788899999999999999999999997
No 13
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=99.94 E-value=1e-26 Score=154.23 Aligned_cols=139 Identities=19% Similarity=0.194 Sum_probs=104.2
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 044140 5 TKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQK 84 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (166)
|+++||||+|+|+.+..++++|+.+|+ .+++ +|+++||.+..+.... . ..........+...+.+++
T Consensus 1 m~~~ILv~~D~s~~s~~al~~a~~la~-~~~a----~l~ll~v~~~~~~~~~--~------~~~~~~~~~~~~~~~~~~~ 67 (141)
T 1jmv_A 1 MYKHILVAVDLSEESPILLKKAVGIAK-RHDA----KLSIIHVDVNFSDLYT--G------LIDVNMSSMQDRISTETQK 67 (141)
T ss_dssp CCSEEEEEECCSTTHHHHHHHHHHHHH-HHTC----EEEEEEEEECCGGGCC--C------CEEHHHHHHTTCCCCHHHH
T ss_pred CCceEEEEecCchhhHHHHHHHHHHHH-hcCC----EEEEEEEecCchhhhc--c------ccccchHHHHHHHHHHHHH
Confidence 479999999999999999999999999 8888 9999999854221111 0 0111111111112233334
Q ss_pred HHHHHHHHHHhCCCCcc-cEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCCC
Q 044140 85 VADKATSICAKREVNDM-PVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMPK 163 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~-~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 163 (166)
.++.+ +.+.|++ + +..+..|++.+.|++++++.++||||||++ ++.+.+ +||++++++++++|||++||+..
T Consensus 68 ~l~~~---~~~~~~~-~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~-~~~~~~--lgs~~~~vl~~~~~pVlvv~~~~ 140 (141)
T 1jmv_A 68 ALLDL---AESVDYP-ISEKLSGSGDLGQVLSDAIEQYDVDLLVTGHH-QDFWSK--LMSSTRQVMNTIKIDMLVVPLRD 140 (141)
T ss_dssp HHHHH---HHHSSSC-CCCEEEEEECHHHHHHHHHHHTTCCEEEEEEC-CCCHHH--HHHHHHHHHTTCCSEEEEEECCC
T ss_pred HHHHH---HHHcCCC-ceEEEEecCCHHHHHHHHHHhcCCCEEEEeCC-Cchhhh--hcchHHHHHhcCCCCEEEeeCCC
Confidence 44433 3445777 6 577888999999999999999999999999 887776 38999999999999999999765
No 14
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.94 E-value=8.4e-26 Score=168.38 Aligned_cols=147 Identities=12% Similarity=0.097 Sum_probs=122.2
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 044140 4 QTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQ 83 (166)
Q Consensus 4 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (166)
+++++||||+|+|+.+..+++||+.+|+ .+++ +|+++|+.+..+..... + ........+.+...+.++
T Consensus 5 ~~~k~ILv~~D~s~~s~~al~~A~~lA~-~~~a----~l~ll~v~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~ 72 (319)
T 3olq_A 5 EKYQNLLVVIDPNQDDQPALRRAVYIVQ-RNGG----RIKAFLPVYDLSYDMTT----L---LSPDERNAMRKGVINQKT 72 (319)
T ss_dssp CCSCEEEEECCTTCSCCHHHHHHHHHHH-HHCC----EEEEEEEECCGGGGCTT----T---SCHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEECCCcccHHHHHHHHHHHH-HcCC----eEEEEEEecccchhhcc----c---cChhhHHHHHHHHHHHHH
Confidence 4679999999999999999999999999 8888 99999998653321111 0 123344455556667777
Q ss_pred HHHHHHHHHHHhCCCCcccEEee-cCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 84 KVADKATSICAKREVNDMPVHVM-QGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~-~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
+.++.+.+.+...|++ +++.+. .|++.+.|++++++.++||||||+++.+.+.++++||++++++++++||||+||..
T Consensus 73 ~~l~~~~~~~~~~~v~-~~~~~~~~g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~~ 151 (319)
T 3olq_A 73 AWIKQQARYYLEAGIQ-IDIKVIWHNRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLIFTPLDWQLLRKCPAPVWMVKDK 151 (319)
T ss_dssp HHHHHHHHHHHHTTCC-EEEEEEECSCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCBCCHHHHHHHHHCSSCEEEEESS
T ss_pred HHHHHHHHHHhhcCCe-EEEEEEecCChHHHHHHHHHhcCCCEEEEecCcCchhhcccccccHHHHHhcCCCCEEEecCc
Confidence 8888888888888999 999998 89999999999999999999999999999999999999999999999999999975
Q ss_pred C
Q 044140 163 K 163 (166)
Q Consensus 163 ~ 163 (166)
.
T Consensus 152 ~ 152 (319)
T 3olq_A 152 E 152 (319)
T ss_dssp C
T ss_pred c
Confidence 4
No 15
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.93 E-value=2.1e-25 Score=164.68 Aligned_cols=143 Identities=20% Similarity=0.197 Sum_probs=119.7
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 044140 4 QTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQ 83 (166)
Q Consensus 4 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (166)
||+++||||+|+|+.+..++++|+.+|+ .+++ +|+++||.+.......... .....+.+...+.++
T Consensus 20 ~m~~~ILv~vD~s~~s~~al~~A~~lA~-~~~a----~l~ll~v~~~~~~~~~~~~---------~~~~~~~~~~~~~~~ 85 (294)
T 3loq_A 20 FQSNAMLLPTDLSENSFKVLEYLGDFKK-VGVE----EIGVLFVINLTKLSTVSGG---------IDIDHYIDEMSEKAE 85 (294)
T ss_dssp STTCEEEEECCSCTGGGGGGGGHHHHHH-TTCC----EEEEECCEECTTC-----C---------CCTTHHHHHHHHHHH
T ss_pred HhhccEEEecCCCHHHHHHHHHHHHHHh-hcCC----EEEEEEEecCccccccccc---------ccHHHHHHHHHHHHH
Confidence 5789999999999999999999999999 8888 9999999876553311111 112233455666777
Q ss_pred HHHHHHHHHHHhCCCCcccE-Eee-cCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 84 KVADKATSICAKREVNDMPV-HVM-QGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~-~v~-~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
+.++.+.+.+.+.|++ ++. .+. .|++.++| ++++.++||||||+++.+.+.++++||++++++++++|||++||+
T Consensus 86 ~~l~~~~~~~~~~g~~-~~~~~v~~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlvv~~ 162 (294)
T 3loq_A 86 EVLPEVAQKIEAAGIK-AEVIKPFPAGDPVVEI--IKASENYSFIAMGSRGASKFKKILLGSVSEGVLHDSKVPVYIFKH 162 (294)
T ss_dssp HHHHHHHHHHHHTTCE-EEECSSCCEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHHHCCHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHHHHHHHcCCC-cceeEeeccCChhHhe--eeccCCCCEEEEcCCCCccccceeeccHHHHHHhcCCCCEEEecC
Confidence 8888888888888999 888 788 89999999 999999999999999999999999999999999999999999997
Q ss_pred CC
Q 044140 162 PK 163 (166)
Q Consensus 162 ~~ 163 (166)
..
T Consensus 163 ~~ 164 (294)
T 3loq_A 163 DM 164 (294)
T ss_dssp CT
T ss_pred cc
Confidence 64
No 16
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.92 E-value=3.7e-24 Score=157.80 Aligned_cols=138 Identities=16% Similarity=0.232 Sum_probs=107.5
Q ss_pred CCCEEEEEEcCChh-------HHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHH
Q 044140 5 TKPIMMVAIDDSNH-------SYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELD 77 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~-------s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (166)
.+++||||+|+|+. +..++++|..+|+ .+++ +|+++||++....... . +.. ...+.
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~-~~~a----~l~ll~v~~~~~~~~~--~--------~~~--~~~~~ 195 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAG-LAKA----TLHVISAHPSPMLSSA--D--------PTF--QLSET 195 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHH-HTTC----EEEEEEEEC-------------------CH--HHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHH-HcCC----eEEEEEEecCcccccc--C--------chh--HHHHH
Confidence 57999999999998 9999999999999 8888 9999999876543211 0 001 22233
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEE
Q 044140 78 TKKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVM 157 (166)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVl 157 (166)
..+..++.++. .+.+.|++.+...+..|++.++|++++++.++||||||+++++++.++++||++++++++++||||
T Consensus 196 ~~~~~~~~l~~---~~~~~g~~~~~~~v~~g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~~Gsv~~~vl~~~~~pVL 272 (290)
T 3mt0_A 196 IEARYREACRT---FQAEYGFSDEQLHIEEGPADVLIPRTAQKLDAVVTVIGTVARTGLSGALIGNTAEVVLDTLESDVL 272 (290)
T ss_dssp HHHHHHHHHHH---HHHHHTCCTTTEEEEESCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCCSCHHHHHHHTTCSSEEE
T ss_pred HHHHHHHHHHH---HHHHcCCCcceEEEeccCHHHHHHHHHHhcCCCEEEECCCCCcCCcceecchHHHHHHhcCCCCEE
Confidence 33344444444 334447743678889999999999999999999999999999999999999999999999999999
Q ss_pred EEcCC
Q 044140 158 IVKMP 162 (166)
Q Consensus 158 vv~~~ 162 (166)
+||+.
T Consensus 273 vv~~~ 277 (290)
T 3mt0_A 273 VLKPD 277 (290)
T ss_dssp EECCH
T ss_pred EECCC
Confidence 99864
No 17
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.92 E-value=2.3e-24 Score=160.18 Aligned_cols=142 Identities=20% Similarity=0.231 Sum_probs=115.3
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 044140 4 QTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQ 83 (166)
Q Consensus 4 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (166)
+++++||||+|+|+.+..++++|+.+|+ .+++ +|+++||.+..... +.... .. ....+...+.++
T Consensus 17 ~~~~~ILv~~D~s~~s~~al~~A~~lA~-~~~a----~l~ll~v~~~~~~~--~~~~~----~~----~~~~~~~~~~~~ 81 (309)
T 3cis_A 17 NSSLGIIVGIDDSPAAQVAVRWAARDAE-LRKI----PLTLVHAVSPEVAT--WLEVP----LP----PGVLRWQQDHGR 81 (309)
T ss_dssp -CTTEEEEECCSSHHHHHHHHHHHHHHH-HHTC----CEEEEEECCCCCCC--TTCCC----CC----HHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHHHHHH-hcCC----cEEEEEEecCcccc--cccCC----CC----chhhHHHHHHHH
Confidence 5789999999999999999999999999 8888 99999998733211 11100 11 123344455666
Q ss_pred HHHHHHHHHHHhC-----CCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEE
Q 044140 84 KVADKATSICAKR-----EVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMI 158 (166)
Q Consensus 84 ~~l~~~~~~~~~~-----~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 158 (166)
+.++++.+.+.+. |++ +++.+..|++.+.|+++++ ++||||||+++++.+.++++||++++|+++++|||++
T Consensus 82 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~~Gs~~~~vl~~~~~PVlv 158 (309)
T 3cis_A 82 HLIDDALKVVEQASLRAGPPT-VHSEIVPAAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRLLGSVSSGLLRHAHCPVVI 158 (309)
T ss_dssp HHHHHHHHHHHHHCSSSCCSC-EEEEEESSCHHHHHHHHGG--GEEEEEEESSCTTCCTTCCSCHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHhcccCCCce-EEEEEecCCHHHHHHHHhc--CCCEEEECCCCCccccccccCcHHHHHHHhCCCCEEE
Confidence 6777777777664 888 9999999999999999998 8999999999999999999999999999999999999
Q ss_pred EcCCC
Q 044140 159 VKMPK 163 (166)
Q Consensus 159 v~~~~ 163 (166)
||...
T Consensus 159 v~~~~ 163 (309)
T 3cis_A 159 IHDED 163 (309)
T ss_dssp ECTTC
T ss_pred EcCCc
Confidence 99764
No 18
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=99.92 E-value=4.4e-24 Score=141.07 Aligned_cols=132 Identities=14% Similarity=0.051 Sum_probs=102.2
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEee-cC-CCCC-cCCCCCCCCCCCchhhHHHHHHHHHH
Q 044140 4 QTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHAR-PN-PPSL-LGLSGAGQGSAGSAHVINLVELDTKK 80 (166)
Q Consensus 4 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~-~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
.++++||||+|+|+.+..++++|+.+|+ .+++ +|+++||. +. +... ....... .. ....+...+
T Consensus 2 ~~~~~ILv~~D~s~~s~~al~~a~~la~-~~~a----~l~ll~v~~~~~~~~~~~~~~~~~----~~----~~~~~~~~~ 68 (138)
T 1q77_A 2 NAMKVLLVLTDAYSDCEKAITYAVNFSE-KLGA----ELDILAVLEDVYNLERANVTFGLP----FP----PEIKEESKK 68 (138)
T ss_dssp CCCEEEEEEESTTCCCHHHHHHHHHHHT-TTCC----EEEEEEECHHHHHHHHHHHHHCCC----CC----THHHHHHHH
T ss_pred CcccEEEEEccCCHhHHHHHHHHHHHHH-HcCC----eEEEEEEecccccccccccccCCC----CC----hHHHHHHHH
Confidence 4689999999999999999999999999 8888 99999998 53 1000 0000000 01 123344455
Q ss_pred HHHHHHHHHHHH--HHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEE
Q 044140 81 RAQKVADKATSI--CAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMI 158 (166)
Q Consensus 81 ~~~~~l~~~~~~--~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 158 (166)
.+++.++.+ +. ....| + +++++..|++.+.|++++++.++||||||++++ |++++++++++|||++
T Consensus 69 ~~~~~l~~~-~~~~~~~~~-~-~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~g~---------sv~~~vl~~a~~PVlv 136 (138)
T 1q77_A 69 RIERRLREV-WEKLTGSTE-I-PGVEYRIGPLSEEVKKFVEGKGYELVVWACYPS---------AYLCKVIDGLNLASLI 136 (138)
T ss_dssp HHHHHHHHH-HHHHHSCCC-C-CCEEEECSCHHHHHHHHHTTSCCSEEEECSCCG---------GGTHHHHHHSSSEEEE
T ss_pred HHHHHHHHH-HHHhhccCC-c-ceEEEEcCCHHHHHHHHHHhcCCCEEEEeCCCC---------chHHHHHHhCCCceEe
Confidence 566666666 55 35557 7 888899999999999999999999999998865 8999999999999999
Q ss_pred Ec
Q 044140 159 VK 160 (166)
Q Consensus 159 v~ 160 (166)
||
T Consensus 137 v~ 138 (138)
T 1q77_A 137 VK 138 (138)
T ss_dssp CC
T ss_pred eC
Confidence 86
No 19
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.92 E-value=4.4e-25 Score=160.86 Aligned_cols=149 Identities=15% Similarity=0.124 Sum_probs=115.4
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCC-CCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGL-SGAGQGSAGSAHVINLVELDTKKRAQKV 85 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (166)
++||||+|+|+.+..++++|+.+|+ .+++ +|+++||.+........ .+............+...+...+.+++.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~-~~~a----~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAY-KLSA----PLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAV 75 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHH-HHTC----CEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHH-HhCC----cEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999 8888 99999998643211000 0000000000001111134456667788
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCc-cchhhhcccHHHHHhhcCCccEEEEcCCC
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYG-AVKRAVLGSVSDYSAHHCSCTVMIVKMPK 163 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~-~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 163 (166)
++.+.+.+...|++ +++.+..|++.+.|+++ +.++||||||+++++ .+.++++||++++++++++|||++||+..
T Consensus 76 l~~~~~~~~~~g~~-~~~~~~~g~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~~Gs~~~~v~~~a~~PVlvv~~~~ 151 (268)
T 3ab8_A 76 LERVRQSALAAGVA-VEAVLEEGVPHEAILRR--ARAADLLVLGRSGEAHGDGFGGLGSTADRVLRASPVPVLLAPGEP 151 (268)
T ss_dssp HHHHHHHHHHTTCC-EEEEEEEECHHHHHHHH--HTTCSEEEEESSCTTSCTTCCSCCHHHHHHHHHCSSCEEEECSSC
T ss_pred HHHHHHHHHhCCCC-eEEEEecCCHHHHHHhh--ccCCCEEEEeccCCCccccccccchhHHHHHHhCCCCEEEECCCC
Confidence 88888888888999 99999999999999999 779999999999998 89899999999999999999999999754
No 20
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.91 E-value=2.6e-23 Score=154.88 Aligned_cols=144 Identities=22% Similarity=0.298 Sum_probs=113.5
Q ss_pred CCCEEEEEEcCCh-------hHHHHHHHHHHhcCCCC--CCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHH
Q 044140 5 TKPIMMVAIDDSN-------HSYYALEWALDYFFPPF--APNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVE 75 (166)
Q Consensus 5 ~~~~Ilv~vd~s~-------~s~~al~~a~~la~~~~--~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (166)
.+++||||+|+++ .+..++++|..+|+ .+ ++ +|+++||++.......... .......+.
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~-~~~~~a----~l~ll~v~~~~~~~~~~~~-------~~~~~~~~~ 222 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSH-RIQKDP----DVHLLSAYPVAPINIAIEL-------PDFDPNLYN 222 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHH-HHCSSC----CEEEEEEECCCSCSCCTTC-------TTCCHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHH-hccCCC----eEEEEEeecCcchhhhccC-------CcccHHHHH
Confidence 5799999999998 57999999999999 87 77 9999999986654322111 111223333
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCcc
Q 044140 76 LDTKKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCT 155 (166)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~p 155 (166)
+...+..++.++. .+.+.|+..++.++..|++.+.|++++++.++||||||+++++++.++++||++++++++++||
T Consensus 223 ~~~~~~~~~~l~~---~~~~~~~~~~~~~v~~g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~~Gsv~~~vl~~~~~p 299 (319)
T 3olq_A 223 NALRGQHLIAMKE---LRQKFSIPEEKTHVKEGLPEQVIPQVCEELNAGIVVLGILGRTGLSAAFLGNTAEQLIDHIKCD 299 (319)
T ss_dssp HHHHHHHHHHHHH---HHHHTTCCGGGEEEEESCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHHHHHHHH---HHHHhCCCcccEEEecCCcHHHHHHHHHHhCCCEEEEeccCccCCccccccHHHHHHHhhCCCC
Confidence 4444444444443 4455677536788889999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC
Q 044140 156 VMIVKMPK 163 (166)
Q Consensus 156 Vlvv~~~~ 163 (166)
||+||+..
T Consensus 300 VLvv~~~~ 307 (319)
T 3olq_A 300 LLAIKPDG 307 (319)
T ss_dssp EEEECCTT
T ss_pred EEEECCCC
Confidence 99999754
No 21
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.90 E-value=2.6e-23 Score=153.43 Aligned_cols=126 Identities=22% Similarity=0.284 Sum_probs=111.8
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 044140 4 QTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQ 83 (166)
Q Consensus 4 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (166)
..+++|||++|+++.+..++++|..+++ .+++ +|+++||.+... .+
T Consensus 168 ~~~~~Ilv~~d~s~~s~~al~~a~~la~-~~~~----~l~ll~v~~~~~-----------------------------~~ 213 (294)
T 3loq_A 168 SLFDRVLVAYDFSKWADRALEYAKFVVK-KTGG----ELHIIHVSEDGD-----------------------------KT 213 (294)
T ss_dssp CTTSEEEEECCSSHHHHHHHHHHHHHHH-HHTC----EEEEEEECSSSC-----------------------------CH
T ss_pred ccCCEEEEEECCCHHHHHHHHHHHHHhh-hcCC----EEEEEEEccCch-----------------------------HH
Confidence 4679999999999999999999999999 7888 999999986432 12
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCCC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMPK 163 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 163 (166)
+.++.+.+.+.+.|++ ++..+..|++.++|++++++.++||||||+++++.+.++++||++++++++++||||+||+..
T Consensus 214 ~~l~~~~~~l~~~~~~-~~~~~~~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~~Gs~~~~vl~~~~~pvLvv~~~~ 292 (294)
T 3loq_A 214 ADLRVMEEVIGAEGIE-VHVHIESGTPHKAILAKREEINATTIFMGSRGAGSVMTMILGSTSESVIRRSPVPVFVCKRGD 292 (294)
T ss_dssp HHHHHHHHHHHHTTCC-EEEEEECSCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHHHHCHHHHHHHHCSSCEEEECSCT
T ss_pred HHHHHHHHHHHHcCCc-EEEEEecCCHHHHHHHHHHhcCcCEEEEeCCCCCCccceeeCcHHHHHHhcCCCCEEEECCCC
Confidence 3455566666778999 999999999999999999999999999999999999999999999999999999999999876
Q ss_pred C
Q 044140 164 S 164 (166)
Q Consensus 164 ~ 164 (166)
+
T Consensus 293 ~ 293 (294)
T 3loq_A 293 D 293 (294)
T ss_dssp T
T ss_pred C
Confidence 4
No 22
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.90 E-value=9.4e-24 Score=155.61 Aligned_cols=124 Identities=11% Similarity=0.066 Sum_probs=106.7
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 044140 4 QTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQ 83 (166)
Q Consensus 4 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (166)
+++++||||+|+|+.+..++++|+.+|+ .+++ +|+++|+.++ . . .+
T Consensus 5 ~~~~~ILv~~D~s~~s~~al~~A~~la~-~~~a----~l~ll~v~~~-------~-------~---------------~~ 50 (290)
T 3mt0_A 5 QAIRSILVVIEPDQLEGLALKRAQLIAG-VTQS----HLHLLVCEKR-------R-------D---------------HS 50 (290)
T ss_dssp TTCCEEEEECCSSCSCCHHHHHHHHHHH-HHCC----EEEEEEECSS-------S-------C---------------CH
T ss_pred hhhceEEEEeCCCccchHHHHHHHHHHH-hcCC----eEEEEEeeCc-------H-------H---------------HH
Confidence 3579999999999999999999999999 8888 9999999862 0 0 11
Q ss_pred HHHHHHHHHHHhCCCCcccEEeec-CCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQ-GDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~-g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
+.++++.+.+...|++ +++.+.. |++.+.|++++++.++||||||+++.+.+.++++||++++++++++|||+++|+.
T Consensus 51 ~~l~~~~~~~~~~~~~-~~~~~~~~g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~~gs~~~~vl~~~~~PVlvv~~~ 129 (290)
T 3mt0_A 51 AALNDLAQELREEGYS-VSTNQAWKDSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAILTPDDWKLLRFAPCPVLMTKTA 129 (290)
T ss_dssp HHHHHHHHHHHHTTCC-EEEEEECSSSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTSCCHHHHHHHHHCSSCEEEECCC
T ss_pred HHHHHHHHHHhhCCCe-EEEEEEeCCCHHHHHHHHHHhcCCCEEEEecccCCchhhcccCHHHHHHHhcCCCCEEEecCC
Confidence 2344444555677999 9998884 7899999999999999999999999999999999999999999999999999953
No 23
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.90 E-value=6.9e-23 Score=152.23 Aligned_cols=137 Identities=20% Similarity=0.245 Sum_probs=108.2
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 044140 4 QTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQ 83 (166)
Q Consensus 4 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (166)
..+++||||+|+++.+..++++|+.+|+ .+++ +|+++||.+..... ... . .... ...+..+
T Consensus 169 ~~~~~Ilv~~D~s~~s~~al~~a~~la~-~~~a----~l~ll~v~~~~~~~-~~~--------~-~~~~----~~~~~~~ 229 (309)
T 3cis_A 169 PQQAPVLVGVDGSSASELATAIAFDEAS-RRNV----DLVALHAWSDVDVS-EWP--------G-IDWP----ATQSMAE 229 (309)
T ss_dssp SCCCCEEEECCSSHHHHHHHHHHHHHHH-HTTC----CEEEEEESCSSCCT-TCS--------S-CCHH----HHHHHHH
T ss_pred CCCCeEEEEeCCChHHHHHHHHHHHHHH-hcCC----EEEEEEEeeccccc-CCC--------c-ccHH----HHHHHHH
Confidence 3578999999999999999999999999 8888 99999998754321 000 0 0111 2233334
Q ss_pred HHHHHHHHHHHh--CCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 84 KVADKATSICAK--REVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 84 ~~l~~~~~~~~~--~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
+.++++.+.+.+ .|+. ++.++..|++.+.|+++++ ++||||||+++++.+.++++||++++|+++++|||+++|+
T Consensus 230 ~~l~~~~~~~~~~~~~~~-~~~~~~~g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l~Gsv~~~vl~~~~~pVlvv~~ 306 (309)
T 3cis_A 230 QVLAERLAGWQERYPNVA-ITRVVVRDQPARQLVQRSE--EAQLVVVGSRGRGGYAGMLVGSVGETVAQLARTPVIVARE 306 (309)
T ss_dssp HHHHHHHTTHHHHCTTSC-EEEEEESSCHHHHHHHHHT--TCSEEEEESSCSSCCTTCSSCHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHHHHHHhhCCCCc-EEEEEEcCCHHHHHHHhhC--CCCEEEECCCCCCCccccccCcHHHHHHhcCCCCEEEeCC
Confidence 444444444433 4788 8899999999999999998 9999999999999999999999999999999999999996
Q ss_pred C
Q 044140 162 P 162 (166)
Q Consensus 162 ~ 162 (166)
.
T Consensus 307 ~ 307 (309)
T 3cis_A 307 S 307 (309)
T ss_dssp -
T ss_pred C
Confidence 4
No 24
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.84 E-value=1.7e-20 Score=136.60 Aligned_cols=116 Identities=19% Similarity=0.230 Sum_probs=100.0
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 044140 5 TKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQK 84 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (166)
.+++||||+|+++.+..++++|..++. .+++ +|+++|+.+.. +..++
T Consensus 153 ~~~~ilv~~d~s~~~~~al~~a~~la~-~~~a----~l~ll~v~~~~----------------------------~~~~~ 199 (268)
T 3ab8_A 153 ELEGALLGYDASESAVRALHALAPLAR-ALGL----GVRVVSVHEDP----------------------------ARAEA 199 (268)
T ss_dssp CCCEEEEECCSCHHHHHHHHHHHHHHH-HHTC----CEEEEEECSSH----------------------------HHHHH
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHhhh-cCCC----EEEEEEEcCcH----------------------------HHHHH
Confidence 568999999999999999999999999 7888 99999997531 11234
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.++.+.+.+.+.|++ ++.++..|++.++|++++++. ||||||+ ++.++++||++++++++++|||+++|
T Consensus 200 ~l~~~~~~l~~~~~~-~~~~~~~g~~~~~i~~~a~~~--dliV~G~----~~~~~~~Gs~~~~vl~~~~~pvlvv~ 268 (268)
T 3ab8_A 200 WALEAEAYLRDHGVE-ASALVLGGDAADHLLRLQGPG--DLLALGA----PVRRLVFGSTAERVIRNAQGPVLTAR 268 (268)
T ss_dssp HHHHHHHHHHHTTCC-EEEEEECSCHHHHHHHHCCTT--EEEEEEC----CCSCCSSCCHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHHHHHcCCc-eEEEEeCCChHHHHHHHHHhC--CEEEECC----cccccEeccHHHHHHhcCCCCEEEeC
Confidence 455666667778999 999888999999999999977 9999998 56788999999999999999999996
No 25
>2iel_A Hypothetical protein TT0030; TT0030,thermus thermophilus, structural genomics, PSI, protein structure initiative; 1.60A {Thermus thermophilus} SCOP: c.26.2.4
Probab=97.06 E-value=0.025 Score=36.28 Aligned_cols=128 Identities=14% Similarity=0.069 Sum_probs=90.5
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCCCC-CCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPPFA-PNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKV 85 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~-~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (166)
++|||-+.-+-.+..+.+....+.. ..+ . .+.++--.++ . ..+ .. ..++..+.+++.
T Consensus 2 ~~vlVlae~tl~~~dl~~vl~~l~~-~~~~~----~f~VLVPa~~--~----~a~------~~-----e~~~a~~~A~~~ 59 (138)
T 2iel_A 2 ARYLVVAHRTAKSPELAAKLKELLA-QDPEA----RFVLLVPAVP--P----PGW------VY-----EENEVRRRAEEE 59 (138)
T ss_dssp CEEEEECSTTTTCHHHHHHHHHHHH-HCTTC----EEEEEEEEEC--C----CCS------CC-------CHHHHHHHHH
T ss_pred ceEEEEecCccCcHhHHHHHHHhhc-CCCce----EEEEEecCCC--C----ccc------cc-----ChHHHHHHHHHH
Confidence 7899999887777666666445544 333 4 5543332222 1 111 10 113455667777
Q ss_pred HHHHHHHHHhCCCCccc-EEeecCCchhHHHHHHhhhC--CcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEE
Q 044140 86 ADKATSICAKREVNDMP-VHVMQGDPRNVMTEAVERFH--PTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~-~~v~~g~~~~~I~~~a~~~~--~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 159 (166)
++.....++..|+. +. -.+..++|..+|.....+.+ +|-||+.+..+ ...+||.-..+.+.=+ ...||+=+
T Consensus 60 l~~sl~aL~~~G~~-a~~G~v~d~~Pl~AL~~~v~~~~~~~deiIV~T~Ph-~vs~~fh~DwasrAr~-~gvPVlhl 133 (138)
T 2iel_A 60 AAAAKRALEAQGIP-VEEAKAGDISPLLAIEEELLAHPGAYQGIVLSTLPP-GLSRWLRLDVHTQAER-FGLPVIHV 133 (138)
T ss_dssp HHHHHHHHHTTTCC-CSEEEEEESSHHHHHHHHHHHSTTSCSEEEEEECCT-TTCHHHHTTHHHHGGG-GSSCEEEE
T ss_pred HHHHHHHHHHcCCc-ccccccCCCChHHHHHHHHHhcCCCCceEEEEcCCc-hHHHHHhccHHHHHHh-cCCCEEEE
Confidence 77888888889999 98 99999999999999999999 99999998865 3567787788887666 89999855
No 26
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=96.22 E-value=0.028 Score=43.79 Aligned_cols=96 Identities=15% Similarity=0.243 Sum_probs=67.0
Q ss_pred CCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 044140 6 KPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKV 85 (166)
Q Consensus 6 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (166)
..+|+|+++|..+|..++..+.++.. ..+. ++.++|+...... ..+...
T Consensus 18 ~~~vlVa~SGG~DS~~Ll~ll~~~~~-~~~~----~v~avhvdhglrg--------------------------~~s~~~ 66 (464)
T 3a2k_A 18 GAAVIVGVSGGPDSLALLHVFLSLRD-EWKL----QVIAAHVDHMFRG--------------------------RESEEE 66 (464)
T ss_dssp SSBEEEECCSSHHHHHHHHHHHHHHH-TTTC----BCEEEEEECTTCT--------------------------HHHHHH
T ss_pred CCEEEEEEcCcHHHHHHHHHHHHHHH-HcCC----eEEEEEEECCCCc--------------------------cccHHH
Confidence 47899999999999999999998887 6666 8999999753210 011123
Q ss_pred HHHHHHHHHhCCCCcccEEeec--------C-Cc--------hhHHHHHHhhhCCcEEEEcccCC
Q 044140 86 ADKATSICAKREVNDMPVHVMQ--------G-DP--------RNVMTEAVERFHPTILVLGSHGY 133 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~--------g-~~--------~~~I~~~a~~~~~dliV~g~~~~ 133 (166)
.+.+.+.|.+.|++ +.+.-.. | ++ ...+.+++++.+++.|+.|.+..
T Consensus 67 ~~~v~~~~~~lgi~-~~v~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~IatgH~~d 130 (464)
T 3a2k_A 67 MEFVKRFCVERRIL-CETAQIDVPAFQRSAGLGAQEAARICRYRFFAELMEKHQAGYVAVGHHGD 130 (464)
T ss_dssp HHHHHHHHHHTTCE-EEEEECCCHHHHTTTTCCSHHHHHHHHHHHHHHHHHTTTCCEEECCCCHH
T ss_pred HHHHHHHHHHcCCc-EEEEEechhhhhhccCCCHHHHHHHHHHHHHHHHHHHcCcCEEEEeCChH
Confidence 34566677778888 6554332 1 11 13456778889999999997743
No 27
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=96.15 E-value=0.036 Score=40.91 Aligned_cols=94 Identities=13% Similarity=0.081 Sum_probs=63.6
Q ss_pred CCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceE-EEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 044140 6 KPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQ-LVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQK 84 (166)
Q Consensus 6 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~-l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (166)
.++|+|++.|..+|..++..+.++.. ..+. + +.++|+...... ....
T Consensus 24 ~~~vlva~SGG~DS~~Ll~ll~~~~~-~~g~----~~v~av~vd~g~r~---------------------------~s~~ 71 (317)
T 1wy5_A 24 ERRVLIAFSGGVDSVVLTDVLLKLKN-YFSL----KEVALAHFNHMLRE---------------------------SAER 71 (317)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHSTT-TTTC----SEEEEEEEECCSST---------------------------HHHH
T ss_pred CCEEEEEecchHHHHHHHHHHHHHHH-HcCC----CEEEEEEEECCCCc---------------------------ccHH
Confidence 47899999999999999999988877 6666 7 999999653210 0112
Q ss_pred HHHHHHHHHHhCCCCcccEEeec--------C-Cc--------hhHHHHHHhhhCCcEEEEcccC
Q 044140 85 VADKATSICAKREVNDMPVHVMQ--------G-DP--------RNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~--------g-~~--------~~~I~~~a~~~~~dliV~g~~~ 132 (166)
..+.+.+.+.+.|++ +.+.-.. | ++ ...+.+.+++.+++.|+.|.+.
T Consensus 72 ~~~~v~~~a~~lgi~-~~v~~~~~~~~~~~~~~~~e~~ar~~Ry~~l~~~a~~~g~~~i~~Gh~~ 135 (317)
T 1wy5_A 72 DEEFCKEFAKERNMK-IFVGKEDVRAFAKENRMSLEEAGRFLRYKFLKEILESEGFDCIATAHHL 135 (317)
T ss_dssp HHHHHHHHHHHHTCC-EEEEECCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTTCSEEECCCCH
T ss_pred HHHHHHHHHHHcCCc-EEEEEEechhhhccCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeCch
Confidence 234455556666887 5543321 1 11 1245667888999999999774
No 28
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=95.32 E-value=0.14 Score=37.91 Aligned_cols=94 Identities=13% Similarity=0.101 Sum_probs=60.1
Q ss_pred CCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 044140 6 KPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKV 85 (166)
Q Consensus 6 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (166)
+.+++|++.+..+|...+..+.+... ..+. .+.++|+....... +.
T Consensus 46 ~~~ivVa~SGGkDS~vLL~Ll~~~~~-~~~~----~i~vv~vDtg~~~~-----------------------------et 91 (325)
T 1zun_A 46 FDNPVMLYSIGKDSAVMLHLARKAFF-PGKL----PFPVMHVDTRWKFQ-----------------------------EM 91 (325)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHHHHT-TSCC----SSCEEEECCSCCCH-----------------------------HH
T ss_pred CCCEEEEEcChHHHHHHHHHHHHhcc-ccCC----CEEEEEEECCCCCH-----------------------------HH
Confidence 46799999999999999999998876 5444 78888885432110 11
Q ss_pred HHHHHHHHHhCCCCcccEEeec-----CC-c-------------hhHHHHHHhhhCCcEEEEcccCCc
Q 044140 86 ADKATSICAKREVNDMPVHVMQ-----GD-P-------------RNVMTEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~-----g~-~-------------~~~I~~~a~~~~~dliV~g~~~~~ 134 (166)
.+.+.+.+++.|++ +.+.... |. . ...+.+++++.++|.++.|.+...
T Consensus 92 ~~~v~~~~~~~gi~-l~v~~~~~~~~~G~~~~~~~~~~cc~~~K~~pL~~~l~e~g~~~i~tG~R~De 158 (325)
T 1zun_A 92 YRFRDQMVEEMGLD-LITHINPDGVAQGINPFTHGSAKHTDIMKTEGLKQALDKHGFDAAFGGARRDE 158 (325)
T ss_dssp HHHHHHHHHTTTCC-EEEECC--------------CCHHHHHHTHHHHHHHHHHHTCSEEECCCCTTS
T ss_pred HHHHHHHHHHcCCC-EEEEeCchHHhcCCCccccChHHHHHHHHHHHHHHHHHHcCCCEEEEecccch
Confidence 22333445566777 5543321 21 0 023566777889999999987543
No 29
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=95.17 E-value=0.29 Score=32.93 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCCcccEEeecC-CchhHHHHHH---hhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 86 ADKATSICAKREVNDMPVHVMQG-DPRNVMTEAV---ERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a---~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+.+.+++.|++ ++..+..- ...+.+.+++ ++.+++.||.|..+...+.. -+...+..||+-||-
T Consensus 38 ~~~a~~~L~~~gI~-~e~~V~SAHRtp~~l~~~~~~a~~~g~~ViIa~AG~aahLpG--------vvAa~T~~PVIGVPv 108 (181)
T 4b4k_A 38 MKYACDILDELNIP-YEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPG--------MVAAKTNLPVIGVPV 108 (181)
T ss_dssp HHHHHHHHHHTTCC-EEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH--------HHHTTCCSCEEEEEC
T ss_pred HHHHHHHHHHcCCC-eeEEEEccccChHHHHHHHHHHHhcCceEEEEeccccccchh--------hHHhcCCCCEEEEec
Confidence 34555566777999 99888774 5555555555 45688999999876655443 245578999999997
Q ss_pred CC
Q 044140 162 PK 163 (166)
Q Consensus 162 ~~ 163 (166)
..
T Consensus 109 ~s 110 (181)
T 4b4k_A 109 QS 110 (181)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 30
>3qjg_A Epidermin biosynthesis protein EPID; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; HET: FMN; 2.04A {Staphylococcus aureus} SCOP: c.34.1.0
Probab=94.91 E-value=0.036 Score=37.42 Aligned_cols=113 Identities=9% Similarity=0.063 Sum_probs=64.1
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 044140 4 QTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQ 83 (166)
Q Consensus 4 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (166)
++.+||++++.++..+.++++..-.+.+ . +. +++++-...... ... .
T Consensus 3 ~m~k~IllgvTGs~aa~k~~~ll~~L~~-~-g~----~V~vv~T~~A~~-----------------fi~---~------- 49 (175)
T 3qjg_A 3 AMGENVLICLCGSVNSINISHYIIELKS-K-FD----EVNVIASTNGRK-----------------FIN---G------- 49 (175)
T ss_dssp --CCEEEEEECSSGGGGGHHHHHHHHTT-T-CS----EEEEEECTGGGG-----------------GSC---H-------
T ss_pred CCCCEEEEEEeCHHHHHHHHHHHHHHHH-C-CC----EEEEEECcCHHH-----------------Hhh---H-------
Confidence 4568999999999999999998877766 4 66 877774322110 000 0
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhh---cccHHHHHhhcCCccEEEEc
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAV---LGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~---~gs~~~~l~~~~~~pVlvv~ 160 (166)
..++. . . + + +.... .+..-..+..++ .+|++|+.--..+.+.+.- -.+....++...++||+++|
T Consensus 50 ~~l~~---l-~--~-~-v~~~~--~~~~~~hi~l~~--~aD~~vVaPaTanTlakiA~GiaDnLlt~~~la~~~pvvl~P 117 (175)
T 3qjg_A 50 EILKQ---F-C--D-N-YYDEF--EDPFLNHVDIAN--KHDKIIILPATSNTINKIANGICDNLLLTICHTAFEKLSIFP 117 (175)
T ss_dssp HHHHH---H-C--S-C-EECTT--TCTTCCHHHHHH--TCSEEEEEEECHHHHHHHHTTCCCSHHHHHHHTCGGGEEEEE
T ss_pred HHHHH---h-c--C-C-EEecC--CCCccccccccc--hhCEEEEeeCCHHHHHHHHccccCCHHHHHHHHcCCCEEEEe
Confidence 00111 1 1 2 2 22111 122233455555 8999999765544443332 23334446667799999998
Q ss_pred C
Q 044140 161 M 161 (166)
Q Consensus 161 ~ 161 (166)
.
T Consensus 118 a 118 (175)
T 3qjg_A 118 N 118 (175)
T ss_dssp C
T ss_pred c
Confidence 3
No 31
>2ywx_A Phosphoribosylaminoimidazole carboxylase catalyti; rossmann fold, structural genomics, NPPSFA; 2.31A {Methanocaldococcus jannaschii}
Probab=94.83 E-value=0.27 Score=32.36 Aligned_cols=67 Identities=18% Similarity=0.172 Sum_probs=50.2
Q ss_pred HHHHHHHHHhCCCCcccEEeecC-CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 86 ADKATSICAKREVNDMPVHVMQG-DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+...++..|++ +++.+..- ...+.+.+++++...+.||.+......+.. -+...+.+||+-||-
T Consensus 15 ~~~a~~~l~~~gi~-~dv~V~saHR~p~~~~~~~~~a~~~ViIa~AG~aa~Lpg--------vva~~t~~PVIgVP~ 82 (157)
T 2ywx_A 15 AEKAVNILKEFGVE-FEVRVASAHRTPELVEEIVKNSKADVFIAIAGLAAHLPG--------VVASLTTKPVIAVPV 82 (157)
T ss_dssp HHHHHHHHHHTTCC-EEEEECCTTTCHHHHHHHHHHCCCSEEEEEEESSCCHHH--------HHHTTCSSCEEEEEE
T ss_pred HHHHHHHHHHcCCC-eEEEEEcccCCHHHHHHHHHhcCCCEEEEEcCchhhhHH--------HHHhccCCCEEEecC
Confidence 34555666778999 99888764 777888889887666999988776655443 355578999999986
No 32
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=94.66 E-value=0.28 Score=32.75 Aligned_cols=68 Identities=15% Similarity=0.132 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCCCcccEEeecC-CchhHHHHHH---hhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 86 ADKATSICAKREVNDMPVHVMQG-DPRNVMTEAV---ERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a---~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+...+++.|++ +++.+..- ...+.+.+++ ++.+++.||.+......+.. -+.-.+.+||+-||-
T Consensus 28 ~~~a~~~l~~~gi~-~ev~V~saHR~p~~l~~~~~~a~~~g~~ViIa~AG~aahLpg--------vvA~~t~~PVIgVPv 98 (173)
T 4grd_A 28 MKHAVAILQEFGVP-YEAKVVSAHRMPDEMFDYAEKARERGLRAIIAGAGGAAHLPG--------MLAAKTTVPVLGVPV 98 (173)
T ss_dssp HHHHHHHHHHTTCC-EEEEECCTTTSHHHHHHHHHHHTTTTCSEEEEEEESSCCHHH--------HHHHHCCSCEEEEEE
T ss_pred HHHHHHHHHHcCCC-EEEEEEccccCHHHHHHHHHHHHhcCCeEEEEeccccccchh--------hheecCCCCEEEEEc
Confidence 34445556677999 88888764 5455555554 45788999998876655443 244577999999985
Q ss_pred C
Q 044140 162 P 162 (166)
Q Consensus 162 ~ 162 (166)
.
T Consensus 99 ~ 99 (173)
T 4grd_A 99 A 99 (173)
T ss_dssp C
T ss_pred C
Confidence 3
No 33
>1xmp_A PURE, phosphoribosylaminoimidazole carboxylase; purine biosynthesis, spine, lyase; 1.80A {Bacillus anthracis} SCOP: c.23.8.1
Probab=94.53 E-value=0.36 Score=32.17 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=48.7
Q ss_pred HHHHHHHHHhCCCCcccEEeecC-CchhHHHHHHh---hhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 86 ADKATSICAKREVNDMPVHVMQG-DPRNVMTEAVE---RFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+...+++.|++ +++.+..- ...+.+.++++ +.+++.||.+......+.. -+...+..||+-||-
T Consensus 27 ~~~a~~~L~~~Gi~-~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgVP~ 97 (170)
T 1xmp_A 27 MKYACDILDELNIP-YEKKVVSAHRTPDYMFEYAETARERGLKVIIAGAGGAAHLPG--------MVAAKTNLPVIGVPV 97 (170)
T ss_dssp HHHHHHHHHHTTCC-EEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--------HHHTTCCSCEEEEEE
T ss_pred HHHHHHHHHHcCCC-EEEEEEeccCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHH--------HHHhccCCCEEEeeC
Confidence 34555566778999 99888764 66666677765 4568988888776655443 355678999999996
Q ss_pred CC
Q 044140 162 PK 163 (166)
Q Consensus 162 ~~ 163 (166)
..
T Consensus 98 ~~ 99 (170)
T 1xmp_A 98 QS 99 (170)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 34
>3trh_A Phosphoribosylaminoimidazole carboxylase carboxyltransferase subunit; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.20A {Coxiella burnetii}
Probab=94.48 E-value=0.38 Score=32.01 Aligned_cols=69 Identities=12% Similarity=0.069 Sum_probs=48.1
Q ss_pred HHHHHHHHHhCCCCcccEEeecC-CchhHHHHH---HhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 86 ADKATSICAKREVNDMPVHVMQG-DPRNVMTEA---VERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~---a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+...+++.|++ +++.+..- ...+.+.++ +++.+++.||.+......+.. -+...+.+||+-||-
T Consensus 22 ~~~a~~~l~~~gi~-~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgVP~ 92 (169)
T 3trh_A 22 METAFTELKSLGIP-FEAHILSAHRTPKETVEFVENADNRGCAVFIAAAGLAAHLAG--------TIAAHTLKPVIGVPM 92 (169)
T ss_dssp HHHHHHHHHHTTCC-EEEEECCTTTSHHHHHHHHHHHHHTTEEEEEEEECSSCCHHH--------HHHHTCSSCEEEEEC
T ss_pred HHHHHHHHHHcCCC-EEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHH--------HHHhcCCCCEEEeec
Confidence 44555666778999 99888764 445555555 445788988888776554442 355578999999996
Q ss_pred CC
Q 044140 162 PK 163 (166)
Q Consensus 162 ~~ 163 (166)
..
T Consensus 93 ~~ 94 (169)
T 3trh_A 93 AG 94 (169)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 35
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=94.44 E-value=0.37 Score=32.21 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=48.5
Q ss_pred HHHHHHHHHhCCCCcccEEeecC-CchhHHHHHHh---hhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 86 ADKATSICAKREVNDMPVHVMQG-DPRNVMTEAVE---RFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+...+++.|++ +++.+..- ...+.+.++++ +.+++.||.+......+.. -+...+.+||+-||-
T Consensus 28 ~~~a~~~L~~~Gi~-~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgVP~ 98 (174)
T 3kuu_A 28 MQFAADVLTTLNVP-FHVEVVSAHRTPDRLFSFAEQAEANGLHVIIAGNGGAAHLPG--------MLAAKTLVPVLGVPV 98 (174)
T ss_dssp HHHHHHHHHHTTCC-EEEEECCTTTCHHHHHHHHHHTTTTTCSEEEEEEESSCCHHH--------HHHHTCSSCEEEEEE
T ss_pred HHHHHHHHHHcCCC-EEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEECChhhhhHH--------HHHhccCCCEEEeeC
Confidence 34555666778999 99888774 55566666654 4678999988776654442 355578999999986
Q ss_pred CC
Q 044140 162 PK 163 (166)
Q Consensus 162 ~~ 163 (166)
..
T Consensus 99 ~~ 100 (174)
T 3kuu_A 99 QS 100 (174)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 36
>3oow_A Phosphoribosylaminoimidazole carboxylase,catalyic; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.75A {Francisella tularensis subsp} SCOP: c.23.8.1 PDB: 3opq_A*
Probab=94.39 E-value=0.38 Score=31.91 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=48.6
Q ss_pred HHHHHHHHHhCCCCcccEEeecC-CchhHHHHHHh---hhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 86 ADKATSICAKREVNDMPVHVMQG-DPRNVMTEAVE---RFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+...++..|++ +++.+..- ...+.+.++++ +.+++.||.+......+.. -+...+.+||+-||-
T Consensus 21 ~~~a~~~l~~~gi~-~ev~V~SaHRtp~~l~~~~~~~~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgVP~ 91 (166)
T 3oow_A 21 MKECCDILDNLGIG-YECEVVSAHRTPDKMFDYAETAKERGLKVIIAGAGGAAHLPG--------MVAAKTTLPVLGVPV 91 (166)
T ss_dssp HHHHHHHHHHTTCE-EEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEECSSCCHHH--------HHHHTCSSCEEEEEC
T ss_pred HHHHHHHHHHcCCC-EEEEEEcCcCCHHHHHHHHHHHHhCCCcEEEEECCcchhhHH--------HHHhccCCCEEEeec
Confidence 44555666778999 88888774 55666666654 4568999998776655442 355578999999996
Q ss_pred CC
Q 044140 162 PK 163 (166)
Q Consensus 162 ~~ 163 (166)
..
T Consensus 92 ~~ 93 (166)
T 3oow_A 92 KS 93 (166)
T ss_dssp CC
T ss_pred Cc
Confidence 43
No 37
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=94.29 E-value=0.33 Score=37.39 Aligned_cols=40 Identities=18% Similarity=0.108 Sum_probs=34.6
Q ss_pred CCEEEEEEcCChhHHHHHHHHHHhcCCC-CCCCCceEEEEEEeecC
Q 044140 6 KPIMMVAIDDSNHSYYALEWALDYFFPP-FAPNHTFQLVLIHARPN 50 (166)
Q Consensus 6 ~~~Ilv~vd~s~~s~~al~~a~~la~~~-~~~~~~~~l~lv~v~~~ 50 (166)
..+|+|++.|..+|..++..+.++.. . .+. ++.++||...
T Consensus 13 ~~~vlVa~SGG~DS~~Ll~ll~~~~~-~~~g~----~v~avhvdhg 53 (433)
T 1ni5_A 13 SRQILVAFSGGLDSTVLLHQLVQWRT-ENPGV----ALRAIHVHHG 53 (433)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHT-TSTTC----EEEEEEECCS
T ss_pred CCEEEEEEcchHHHHHHHHHHHHHHH-hcCCC----eEEEEEEECC
Confidence 47899999999999999999998887 5 566 9999999653
No 38
>3umv_A Deoxyribodipyrimidine photo-lyase; CPD cyclobutane pyrimidine dimers, UV damaged DNA, DNA repai flavoprotein; HET: FAD; 1.71A {Oryza sativa japonica group}
Probab=93.99 E-value=1.1 Score=35.33 Aligned_cols=120 Identities=19% Similarity=0.111 Sum_probs=74.3
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 044140 14 DDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKATSIC 93 (166)
Q Consensus 14 d~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (166)
|..-....||..|++.|. ..+. .|..|++.++..... ..+ ........+-|..+.+.+
T Consensus 47 DLRl~DN~AL~~A~~~a~-~~~~----pVl~vfildp~~~~~-~~~----------------~~r~~FL~~sL~dL~~~L 104 (506)
T 3umv_A 47 DQRLADNWALLHAAGLAA-ASAS----PLAVAFALFPRPFLL-SAR----------------RRQLGFLLRGLRRLAADA 104 (506)
T ss_dssp CCCSTTCHHHHHHHHHHH-HHTC----CEEEEEECCCTTCGG-GCC----------------HHHHHHHHHHHHHHHHHH
T ss_pred CcchhhcHHHHHHHHhhh-hcCC----CEEEEEeccchhhcc-CCC----------------HHHHHHHHHHHHHHHHHH
Confidence 444456688889998876 5555 899999987642211 000 223345555667777777
Q ss_pred HhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh--cCCccEEEEcC
Q 044140 94 AKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH--HCSCTVMIVKM 161 (166)
Q Consensus 94 ~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~--~~~~pVlvv~~ 161 (166)
++.|+. ..++.|++.+. .+.+++.+++.|+.... .....+..-..+ .+.+. ...+++..+..
T Consensus 105 ~~lG~~---L~v~~G~p~~v-~~L~~~~~a~~V~~d~e-p~~~~r~rD~~V-~~~l~~~~~gi~~~~~~~ 168 (506)
T 3umv_A 105 AARHLP---FFLFTGGPAEI-PALVQRLGASTLVADFS-PLRPVREALDAV-VGDLRREAPGVAVHQVDA 168 (506)
T ss_dssp HHTTCC---EEEESSCTTHH-HHHHHHTTCSEEEECCC-CCHHHHHHHHHH-HHHHHHHCTTSEEEEECC
T ss_pred HHcCCc---eEEEecChHHH-HHHHHhcCCCEEEeccC-hhHHHHHHHHHH-HHHHhhccCCeEEEEeCC
Confidence 777877 56678999999 99999999999997322 111111111222 22333 56788776653
No 39
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=93.85 E-value=0.52 Score=31.21 Aligned_cols=69 Identities=13% Similarity=0.156 Sum_probs=47.9
Q ss_pred HHHHHHHHHhCCCCcccEEeecC-CchhHHHHHHh---hhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 86 ADKATSICAKREVNDMPVHVMQG-DPRNVMTEAVE---RFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+...+++.|++ +++.+..- ...+.+.++++ +.+++.||.+......+.. -+...+.+||+-||-
T Consensus 19 ~~~a~~~l~~~gi~-~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgVP~ 89 (163)
T 3ors_A 19 MQESCNMLDYFEIP-YEKQVVSAHRTPKMMVQFASEARERGINIIIAGAGGAAHLPG--------MVASLTTLPVIGVPI 89 (163)
T ss_dssp HHHHHHHHHHTTCC-EEEEECCTTTSHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--------HHHHHCSSCEEEEEE
T ss_pred HHHHHHHHHHcCCC-EEEEEECCcCCHHHHHHHHHHHHhCCCcEEEEECCchhhhHH--------HHHhccCCCEEEeeC
Confidence 44555666778999 99888764 55566666654 4678999888776655442 245578999999985
Q ss_pred CC
Q 044140 162 PK 163 (166)
Q Consensus 162 ~~ 163 (166)
..
T Consensus 90 ~~ 91 (163)
T 3ors_A 90 ET 91 (163)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 40
>1u11_A PURE (N5-carboxyaminoimidazole ribonucleotide MUT; acidophIle, protein stability, lyase; HET: CIT; 1.55A {Acetobacter aceti} SCOP: c.23.8.1 PDB: 2fwj_A* 2fw1_A* 2fwb_A 2fwa_A 2fw9_A 2fw7_A 2fw6_A 2fwp_A* 2fwi_A* 2fw8_A
Probab=93.85 E-value=0.5 Score=31.85 Aligned_cols=69 Identities=10% Similarity=0.155 Sum_probs=48.3
Q ss_pred HHHHHHHHHhCCCCcccEEeecC-CchhHHHHHHh---hhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 86 ADKATSICAKREVNDMPVHVMQG-DPRNVMTEAVE---RFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+...++..|++ +++.+..- ...+.+.++++ +.+++.||.+......+.. -+...+.+||+-||-
T Consensus 37 ~~~a~~~L~~~Gi~-~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgVP~ 107 (182)
T 1u11_A 37 MRHADALLTELEIP-HETLIVSAHRTPDRLADYARTAAERGLNVIIAGAGGAAHLPG--------MCAAWTRLPVLGVPV 107 (182)
T ss_dssp HHHHHHHHHHTTCC-EEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--------HHHHHCSSCEEEEEE
T ss_pred HHHHHHHHHHcCCC-eEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCchhhhHH--------HHHhccCCCEEEeeC
Confidence 34555566778999 99888764 66666667765 4568988888776655443 245578999999996
Q ss_pred CC
Q 044140 162 PK 163 (166)
Q Consensus 162 ~~ 163 (166)
..
T Consensus 108 ~~ 109 (182)
T 1u11_A 108 ES 109 (182)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 41
>3lp6_A Phosphoribosylaminoimidazole carboxylase catalyti; alpha and beta protein, structural genomics, PSI-2, protein initiative; 1.70A {Mycobacterium tuberculosis} SCOP: c.23.8.0
Probab=93.83 E-value=0.51 Score=31.58 Aligned_cols=68 Identities=16% Similarity=0.186 Sum_probs=47.2
Q ss_pred HHHHHHHHHhCCCCcccEEeecC-CchhHHHHH---HhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 86 ADKATSICAKREVNDMPVHVMQG-DPRNVMTEA---VERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~---a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+...+++.|++ +++.+..- ...+.+.++ +++.+++.||.+......+.. -+...+.+||+-||-
T Consensus 23 ~~~a~~~L~~~gi~-~ev~V~SaHR~p~~~~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgVP~ 93 (174)
T 3lp6_A 23 MADAAAALAEFDIP-AEVRVVSAHRTPEAMFSYARGAAARGLEVIIAGAGGAAHLPG--------MVAAATPLPVIGVPV 93 (174)
T ss_dssp HHHHHHHHHHTTCC-EEEEECCTTTCHHHHHHHHHHHHHHTCCEEEEEEESSCCHHH--------HHHHHCSSCEEEEEE
T ss_pred HHHHHHHHHHcCCC-EEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEecCchhhhHH--------HHHhccCCCEEEeeC
Confidence 34555666778999 88888764 444555555 556789999988776655442 245578999999986
Q ss_pred C
Q 044140 162 P 162 (166)
Q Consensus 162 ~ 162 (166)
.
T Consensus 94 ~ 94 (174)
T 3lp6_A 94 P 94 (174)
T ss_dssp C
T ss_pred C
Confidence 4
No 42
>2xry_A Deoxyribodipyrimidine photolyase; DNA damage, DNA repair; HET: FAD; 1.50A {Methanosarcina mazei} PDB: 2xrz_A*
Probab=93.58 E-value=0.72 Score=36.01 Aligned_cols=114 Identities=12% Similarity=0.125 Sum_probs=73.4
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044140 16 SNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKATSICAK 95 (166)
Q Consensus 16 s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (166)
.-....+|..|++.+. ..+. .|..|++.++.... .+ ........+.+..+.+.+++
T Consensus 48 Rl~DN~aL~~A~~~a~-~~~~----~v~~vfi~dp~~~~---~~----------------~~r~~Fl~~sL~~L~~~L~~ 103 (482)
T 2xry_A 48 RAEDNWALLFSRAIAK-EANV----PVVVVFCLTDEFLE---AG----------------IRQYEFMLKGLQELEVSLSR 103 (482)
T ss_dssp CSSSCHHHHHHHHHHH-HHTS----CEEEEEEECTTGGG---SC----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHH-HcCC----cEEEEEEeChhhhc---cC----------------HHHHHHHHHHHHHHHHHHHH
Confidence 3445678888888775 4445 78888888754321 00 22233445556677777777
Q ss_pred CCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 96 REVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 96 ~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.|++ ..++.|++.+.|.+.+++.+++.|+...... ...+.. ...+.....|++..+..
T Consensus 104 ~G~~---L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~~-~~~~~~----~~~v~~~lgi~~~~~~~ 161 (482)
T 2xry_A 104 KKIP---SFFLRGDPGEKISRFVKDYNAGTLVTDFSPL-RIKNQW----IEKVISGISIPFFEVDA 161 (482)
T ss_dssp TTCC---EEEEESCHHHHHHHHHHHTTCSEEEEECCCS-HHHHHH----HHHHHHHCCSCEEEECC
T ss_pred cCCc---EEEEeCCHHHHHHHHHHHcCCCEEEEecccc-hhHHHH----HHHHHHHcCCEEEEEeC
Confidence 7887 4556799999999999999999999865432 222211 23333334788877654
No 43
>2wq7_A RE11660P; lyase-DNA complex, DNA repair, DNA lesion, lyase; HET: TDY Z FAD; 2.00A {Drosophila melanogaster} PDB: 2wb2_A* 2wq6_A* 3cvu_A* 3cvv_A* 3cvy_A* 3cvw_A* 3cvx_A*
Probab=93.35 E-value=1.7 Score=34.53 Aligned_cols=128 Identities=11% Similarity=-0.016 Sum_probs=79.5
Q ss_pred EEEEEE--cCChhHHHHHHHHHHhcCCC--CCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 044140 8 IMMVAI--DDSNHSYYALEWALDYFFPP--FAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQ 83 (166)
Q Consensus 8 ~Ilv~v--d~s~~s~~al~~a~~la~~~--~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (166)
.+|+=+ |..-....+|..|++.+. . .+. .|..|++.++........+ ........
T Consensus 30 ~vl~WfrrDLRl~DN~aL~~A~~~~~-~~~~~~----pv~~vfi~dp~~~~~~~~~----------------~~r~~Fl~ 88 (543)
T 2wq7_A 30 TLVHWFRKGLRLHDNPALSHIFTAAN-AAPGRY----FVRPIFILDPGILDWMQVG----------------ANRWRFLQ 88 (543)
T ss_dssp EEEEEESSCCCSTTCHHHHHHHHHHH-HSTTTE----EEEEEEEECTTGGGCTTSC----------------HHHHHHHH
T ss_pred eEEEEeCCCcCcchHHHHHHHHHhCc-cccCCC----eEEEEEEECchhhcccCCC----------------HHHHHHHH
Confidence 335544 445566778888887765 3 344 7999999876432211000 22233445
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
+.+..+.+.+++.|+. ..++.|++.+.|.+.+++.+++.|+.-.. .+.... -.-.-....+....|++..+..
T Consensus 89 ~sL~~L~~~L~~~G~~---L~v~~g~~~~~l~~l~~~~~~~~v~~~~~-~~p~~~-~rd~~v~~~~~~~gi~~~~~~~ 161 (543)
T 2wq7_A 89 QTLEDLDNQLRKLNSR---LFVVRGKPAEVFPRIFKSWRVEMLTFETD-IEPYSV-TRDAAVQKLAKAEGVRVETHCS 161 (543)
T ss_dssp HHHHHHHHHHHHTTCC---CEEEESCHHHHHHHHHHHTTEEEEEEECC-CSHHHH-HHHHHHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHcCCCEEEEecC-cCHHHH-HHHHHHHHHHHHcCCEEEEecC
Confidence 5566777777777887 45567999999999999999999988644 222221 1122334455556788777654
No 44
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=93.14 E-value=0.59 Score=31.51 Aligned_cols=69 Identities=13% Similarity=0.168 Sum_probs=47.6
Q ss_pred HHHHHHHHHhCCCCcccEEeecC-CchhHHHHHHh---hhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 86 ADKATSICAKREVNDMPVHVMQG-DPRNVMTEAVE---RFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+...++..|++ +++.+..- ...+.+.++++ +.+++.||.+......+.. -+...+.+||+-||-
T Consensus 29 ~~~a~~~L~~~Gi~-~dv~V~SaHR~p~~l~~~~~~a~~~g~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgVP~ 99 (183)
T 1o4v_A 29 MKQAAEILEEFGID-YEITIVSAHRTPDRMFEYAKNAEERGIEVIIAGAGGAAHLPG--------MVASITHLPVIGVPV 99 (183)
T ss_dssp HHHHHHHHHHTTCE-EEEEECCTTTCHHHHHHHHHHTTTTTCCEEEEEEESSCCHHH--------HHHHHCSSCEEEEEE
T ss_pred HHHHHHHHHHcCCC-eEEEEEcccCCHHHHHHHHHHHHhCCCcEEEEecCcccccHH--------HHHhccCCCEEEeeC
Confidence 34555566778999 98888764 55566666654 4578998888776655442 245568999999996
Q ss_pred CC
Q 044140 162 PK 163 (166)
Q Consensus 162 ~~ 163 (166)
..
T Consensus 100 ~~ 101 (183)
T 1o4v_A 100 KT 101 (183)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 45
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=93.11 E-value=0.38 Score=34.95 Aligned_cols=101 Identities=6% Similarity=0.058 Sum_probs=64.3
Q ss_pred HHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Q 044140 21 YALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKATSICAKREVND 100 (166)
Q Consensus 21 ~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~ 100 (166)
-++-.|-.+.. ..++ ++.++.|++. +...+.+++.++++.+.+ .++
T Consensus 180 LmlllAylL~~-nW~A----~I~L~~vV~d-------------------------e~a~~~a~~~l~~Lv~~~---Ri~- 225 (294)
T 3g40_A 180 LALLIAYKLKS-NWKA----SLSFMTFAPT-------------------------AIQAQAAENFLQSLAELA---RIP- 225 (294)
T ss_dssp HHHHHHHHHHH-HHTC----EEEEEEECSS-------------------------HHHHHHHHHHHHHHHHHH---TCC-
T ss_pred HHHHHHHHHhh-CcCC----eEEEEEecCC-------------------------HHHHHHHHHHHHHHHHHh---cCC-
Confidence 34444444444 4566 9999999763 444555566666665554 344
Q ss_pred ccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCCCC
Q 044140 101 MPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMPKS 164 (166)
Q Consensus 101 ~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~~ 164 (166)
.+..++. .+-..|+..+. ++||+++|-.....+. ...+++..+....+.+++.+.
T Consensus 226 a~~~vv~-~~F~~il~~s~--~ADL~flGl~~~~df~------~~~~~~~~~~ssc~f~~dsg~ 280 (294)
T 3g40_A 226 NVKMQVL-RENPIKSSKLP--FASLHIFSLDPNPDLD------LARHLMEKAGSSCIFALDSGE 280 (294)
T ss_dssp SCEEEEE-SSCTTTSSSCC--CCSEEEEECCSSCCHH------HHHHHHHHHTSEEEEEECCSC
T ss_pred ceEEEec-CchHHHHhhCc--CCCEEEEcCCCCCcHH------HHHHHHHhcCCeEEEEecCch
Confidence 4433444 55556665554 7999999987655443 456778888888888887543
No 46
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=93.10 E-value=0.66 Score=30.61 Aligned_cols=68 Identities=9% Similarity=0.156 Sum_probs=47.5
Q ss_pred HHHHHHHHHhCCCCcccEEeecC-CchhHHHHHHhh---h-CCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 86 ADKATSICAKREVNDMPVHVMQG-DPRNVMTEAVER---F-HPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a~~---~-~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.+.+...+++.|++ +++.+..- ...+.+.+++++ . .++.||.+......+.. -+...+.+||+-||
T Consensus 18 ~~~a~~~l~~~gi~-~ev~V~saHR~p~~~~~~~~~a~~~~~~~ViIa~AG~aa~Lpg--------vvA~~t~~PVIgVP 88 (159)
T 3rg8_A 18 AEKIASELKTFGIE-YAIRIGSAHKTAEHVVSMLKEYEALDRPKLYITIAGRSNALSG--------FVDGFVKGATIACP 88 (159)
T ss_dssp HHHHHHHHHHTTCE-EEEEECCTTTCHHHHHHHHHHHHTSCSCEEEEEECCSSCCHHH--------HHHHHSSSCEEECC
T ss_pred HHHHHHHHHHcCCC-EEEEEEcccCCHHHHHHHHHHhhhcCCCcEEEEECCchhhhHH--------HHHhccCCCEEEee
Confidence 44555666778999 88888764 556666666543 2 58999998776655442 24557899999999
Q ss_pred CC
Q 044140 161 MP 162 (166)
Q Consensus 161 ~~ 162 (166)
..
T Consensus 89 ~~ 90 (159)
T 3rg8_A 89 PP 90 (159)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 47
>2ejb_A Probable aromatic acid decarboxylase; phenylacrylic acid decarboxylase, X-RAY diffraction, structural genomics, NPPSFA; 2.15A {Aquifex aeolicus}
Probab=92.59 E-value=0.77 Score=31.23 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=29.1
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEE
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIH 46 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~ 46 (166)
+||++++.|+..+.++.+..-.+.+ . +. +++++-
T Consensus 2 k~IllgvTGs~aa~k~~~l~~~L~~-~-g~----~V~vv~ 35 (189)
T 2ejb_A 2 QKIALCITGASGVIYGIKLLQVLEE-L-DF----SVDLVI 35 (189)
T ss_dssp CEEEEEECSSTTHHHHHHHHHHHHH-T-TC----EEEEEE
T ss_pred CEEEEEEECHHHHHHHHHHHHHHHH-C-CC----EEEEEE
Confidence 7999999999999999999988876 4 66 888773
No 48
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=92.37 E-value=1.7 Score=29.84 Aligned_cols=34 Identities=6% Similarity=-0.075 Sum_probs=27.7
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeec
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARP 49 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~ 49 (166)
.+|+|+++|..+|..++..+.++.. ++.++|+..
T Consensus 45 ~~v~Va~SGGkDS~vLL~ll~~~~~---------~v~~v~vd~ 78 (215)
T 1sur_A 45 GEYVLSSSFGIQAAVSLHLVNQIRP---------DIPVILTDT 78 (215)
T ss_dssp SEEEEECCCCTTHHHHHHHHHHHST---------TCEEEEEEC
T ss_pred CCEEEEecCCHHHHHHHHHHHHhCC---------CCeEEEeeC
Confidence 4899999999999999988877632 567788765
No 49
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=92.01 E-value=2.6 Score=30.63 Aligned_cols=121 Identities=12% Similarity=0.146 Sum_probs=78.5
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVA 86 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (166)
-+|||++.........++++..+.. ..| -++++++.+..... .+.++ +
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~-~~G-----~ltv~~i~p~~~~~----------------------~l~~q----l 68 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITY-PKG-----SVKLLGLAGNTDKE----------------------NLLSQ----L 68 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHT-TTC-----EEEEEECC---CTT----------------------CHHHH----H
T ss_pred CcEEEecCCchhhhhHHHHHHHhcc-Cce-----eEEEEEEccCCCcc----------------------HHHHH----H
Confidence 4799999888889999999999999 665 89999996543211 00111 2
Q ss_pred HHHHHHHHhCCCCcccEEeec-CCchhHHHHHHhhhC-----CcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 87 DKATSICAKREVNDMPVHVMQ-GDPRNVMTEAVERFH-----PTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~v~~-g~~~~~I~~~a~~~~-----~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
+.+++.+++.++. ..+++.. .++..++....+.++ .+.|++|-.....-.. -+..+..+ +++...-|++.+
T Consensus 69 ~~l~~~l~~r~v~-a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~-~y~~~i~~-~~~~~~nVlil~ 145 (294)
T 3g40_A 69 PSISEGFQEEGVF-SSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDE-EIREIIRK-ASMYRMGVLLFS 145 (294)
T ss_dssp HHHHHHHHHTTCE-EEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHH-HHHHHHHH-HHHTTCEEEEEE
T ss_pred HHHHHHHHhCCce-eEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhH-HHHHHHHH-HHHhCceEEEEe
Confidence 5667788889999 8877766 488888888777654 5889998664332211 12333333 345688888887
Q ss_pred CC
Q 044140 161 MP 162 (166)
Q Consensus 161 ~~ 162 (166)
..
T Consensus 146 ~~ 147 (294)
T 3g40_A 146 KH 147 (294)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 50
>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}
Probab=90.76 E-value=2.3 Score=32.08 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=30.3
Q ss_pred CCCCCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecC
Q 044140 1 MGDQTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPN 50 (166)
Q Consensus 1 m~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~ 50 (166)
|.....++|+|++.+..+|..++..+.+. +. +++.+|+...
T Consensus 4 ~~~~~~~kVlVa~SGGvDSsv~a~lL~~~-----G~----~V~~v~~~~~ 44 (376)
T 2hma_A 4 MSDNSKTRVVVGMSGGVDSSVTALLLKEQ-----GY----DVIGIFMKNW 44 (376)
T ss_dssp -CCGGGSEEEEECCSSHHHHHHHHHHHHT-----TC----EEEEEEEECC
T ss_pred hhhCCCCeEEEEEeCHHHHHHHHHHHHHc-----CC----cEEEEEEECC
Confidence 44445679999999999998887766442 45 8999998653
No 51
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=90.51 E-value=3.1 Score=29.58 Aligned_cols=38 Identities=5% Similarity=-0.113 Sum_probs=31.4
Q ss_pred CCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeec
Q 044140 6 KPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARP 49 (166)
Q Consensus 6 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~ 49 (166)
+.+++|++.+..+|...+..+.++.. . +. .+.++|+..
T Consensus 41 ~~~v~va~SGGkDS~vLL~ll~~~~~-~-~~----~i~vv~iDt 78 (261)
T 2oq2_A 41 FPHLFQTTAFGLTGLVTIDMLSKLSE-K-YY----MPELLFIDT 78 (261)
T ss_dssp CSSEEEECCCCHHHHHHHHHHHHHTT-T-SC----CCEEEEECC
T ss_pred CCCEEEEecCCHHHHHHHHHHHHhCc-c-CC----CeeEEEecC
Confidence 35799999999999999999988877 5 44 788888854
No 52
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=90.38 E-value=2.8 Score=32.76 Aligned_cols=118 Identities=9% Similarity=0.003 Sum_probs=70.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 044140 14 DDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKATSIC 93 (166)
Q Consensus 14 d~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (166)
|..-....+|..|++.. . .|..|++.++........+ ........+.+..+.+.+
T Consensus 12 DLRl~Dn~aL~~A~~~~-----~----~v~~vfi~dp~~~~~~~~~----------------~~r~~fl~~sL~~L~~~L 66 (484)
T 1owl_A 12 DLRLSDNIGLAAARAQS-----A----QLIGLFCLDPQILQSADMA----------------PARVAYLQGCLQELQQRY 66 (484)
T ss_dssp CCCSSSCHHHHHHHHHC-----S----CEEEEEEECHHHHTCTTCC----------------HHHHHHHHHHHHHHHHHH
T ss_pred CCCcchhHHHHHHHhcC-----C----CEEEEEEEcchhhcCCCCC----------------HHHHHHHHHHHHHHHHHH
Confidence 33444556777776532 2 6778888764221100000 222334445566666677
Q ss_pred HhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 94 AKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 94 ~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
++.|+. ..++.|++.+.|.+.+++.+++.|+....- ....... -....+.+....|++..+..
T Consensus 67 ~~~G~~---L~v~~g~~~~~l~~l~~~~~~~~v~~~~~~-~p~~~~r-d~~v~~~l~~~gi~~~~~~~ 129 (484)
T 1owl_A 67 QQAGSR---LLLLQGDPQHLIPQLAQQLQAEAVYWNQDI-EPYGRDR-DGQVAAALKTAGIRAVQLWD 129 (484)
T ss_dssp HHHTSC---EEEEESCHHHHHHHHHHHTTCSEEEEECCC-SHHHHHH-HHHHHHHHHHTTCEEEEECC
T ss_pred HHCCCe---EEEEeCCHHHHHHHHHHHcCCCEEEEeccC-ChhHHHH-HHHHHHHHHHcCcEEEEecC
Confidence 777877 455679999999999999999999986442 2222222 22334445556788877654
No 53
>3tvs_A Cryptochrome-1; circadian clock light entrainment, jetlag, phosphorylation, gene regulation, signaling protein; HET: TPO FAD; 2.30A {Drosophila melanogaster} PDB: 4gu5_A*
Probab=89.97 E-value=1.8 Score=34.31 Aligned_cols=120 Identities=9% Similarity=-0.025 Sum_probs=72.1
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 044140 14 DDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKATSIC 93 (166)
Q Consensus 14 d~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (166)
|..-....||..|++.+. .+. .|..|++.++........+ ........+.+..+.+.+
T Consensus 13 DLRl~DN~AL~~A~~~~~--~g~----~vl~vfi~dp~~~~~~~~~----------------~~r~~Fl~~sL~~L~~~L 70 (538)
T 3tvs_A 13 GLRLHDNPALLAALADKD--QGI----ALIPVFIFDGESAGTKNVG----------------YNRMRFLLDSLQDIDDQL 70 (538)
T ss_dssp CCCSSSCHHHHTTTGGGT--TTC----BCCEEEEECSSSSCSTTCC----------------HHHHHHHHHHHHHHHHHG
T ss_pred CcchhhhHHHHHHHHhCC--CCC----CEEEEEecChhhhccCCCC----------------HHHHHHHHHHHHHHHHHH
Confidence 333445567777766544 234 7888999875433211111 222344555667777777
Q ss_pred HhC---CCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 94 AKR---EVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 94 ~~~---~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
++. |+. ..++.|++.+.|.+++++.+++.|+.... .+..... .-....+.+....|++..+.
T Consensus 71 ~~~~~~G~~---L~v~~G~~~~vl~~L~~~~~a~~V~~n~~-~~~~~~~-RD~~v~~~l~~~gi~~~~~~ 135 (538)
T 3tvs_A 71 QAATDGRGR---LLVFEGEPAYIFRRLHEQVRLHRICIEQD-CEPIWNE-RDESIRSLCRELNIDFVEKV 135 (538)
T ss_dssp GGSCSSSSC---CEEEESCHHHHHHHHHHHHCEEEECEECC-CCGGGHH-HHHHHHHHHHHSSCCCCEEC
T ss_pred HHhhcCCCe---EEEEeCCHHHHHHHHHHHcCCCEEEEccC-CCHHHHH-HHHHHHHHHHhCCceEEEec
Confidence 777 766 56678999999999999999999987543 3322211 11233445555566665544
No 54
>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*
Probab=89.91 E-value=2.9 Score=32.47 Aligned_cols=37 Identities=14% Similarity=0.055 Sum_probs=30.2
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecC
Q 044140 5 TKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPN 50 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~ 50 (166)
..++|+|++.+.-+|..++.++.+. +. +|+++|+...
T Consensus 9 ~~~KVvVA~SGGlDSSvll~~L~e~-----G~----eViavtvd~G 45 (455)
T 1k92_A 9 VGQRIGIAFSGGLDTSAALLWMRQK-----GA----VPYAYTANLG 45 (455)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHT-----TC----EEEEEEEECC
T ss_pred CCCeEEEEEcChHHHHHHHHHHHHc-----CC----EEEEEEEEcC
Confidence 3478999999999999998888553 45 9999999754
No 55
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=89.54 E-value=6.2 Score=30.77 Aligned_cols=130 Identities=12% Similarity=-0.018 Sum_probs=74.8
Q ss_pred CEEEEEE--cCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 044140 7 PIMMVAI--DDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQK 84 (166)
Q Consensus 7 ~~Ilv~v--d~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (166)
+.+|+=+ |..-....+|..|++. +. .+..|++.++.......... .. .-........+
T Consensus 6 ~~~l~WfrrDLRl~DN~aL~~A~~~-----~~----~v~~vfi~dp~~~~~~~~~~-------~~----~~~~r~~Fl~~ 65 (489)
T 1np7_A 6 PTVLVWFRNDLRLHDHEPLHRALKS-----GL----AITAVYCYDPRQFAQTHQGF-------AK----TGPWRSNFLQQ 65 (489)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHT-----TS----EEEEEEEECGGGGSBCTTSC-------BS----SCHHHHHHHHH
T ss_pred CcEEEEeCCCCCcchHHHHHHHHhc-----CC----CEEEEEEECchhhccccccc-------CC----CCHHHHHHHHH
Confidence 3455555 4445566777777642 23 77788888753322100000 00 00222334455
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+..+.+.+++.|++ ..++.|++.+.|.+.+++.+++.|+....- .......-. ...+.+....|++..+..
T Consensus 66 sL~~L~~~L~~~G~~---L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~-~~~~~~rd~-~v~~~l~~~gi~~~~~~~ 137 (489)
T 1np7_A 66 SVQNLAESLQKVGNK---LLVTTGLPEQVIPQIAKQINAKTIYYHREV-TQEELDVER-NLVKQLTILGIEAKGYWG 137 (489)
T ss_dssp HHHHHHHHHHHTTCC---EEEEESCHHHHHHHHHHHTTEEEEEEECCC-SHHHHHHHH-HHHHHHHHHTCEEEEECC
T ss_pred HHHHHHHHHHHCCCc---EEEEECCHHHHHHHHHHHcCCCEEEEeccc-CHHHHHHHH-HHHHHHHhcCCeEEEecC
Confidence 566777777777887 455679999999999999999999887442 222222212 223344455677776654
No 56
>3ih5_A Electron transfer flavoprotein alpha-subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; 2.60A {Bacteroides thetaiotaomicron}
Probab=89.21 E-value=1.3 Score=30.82 Aligned_cols=85 Identities=14% Similarity=0.123 Sum_probs=57.1
Q ss_pred CCEEEEEEcC-----ChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHH
Q 044140 6 KPIMMVAIDD-----SNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKK 80 (166)
Q Consensus 6 ~~~Ilv~vd~-----s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
+++|||-++- .+.+..++..|.+++. ..+. +++++-+-+...
T Consensus 3 m~~ilV~~E~~~g~l~~~s~ell~~A~~La~-~~g~----~v~av~~G~~~~---------------------------- 49 (217)
T 3ih5_A 3 ANNLFVYCEIEEGIVADVSLELLTKGRSLAN-ELNC----QLEAVVAGTGLK---------------------------- 49 (217)
T ss_dssp CCCEEEECCEETTEECHHHHHHHHHHHHHHH-HHTC----CEEEEEEESCCT----------------------------
T ss_pred cccEEEEEECcCCEECHHHHHHHHHHHHHHH-hcCC----eEEEEEECCCHH----------------------------
Confidence 3678988864 4679999999999998 7777 888887754210
Q ss_pred HHHHHHHHHHHHHHhCCCCcccEEeecC------C---chhHHHHHHhhhCCcEEEEcccC
Q 044140 81 RAQKVADKATSICAKREVNDMPVHVMQG------D---PRNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 81 ~~~~~l~~~~~~~~~~~i~~~~~~v~~g------~---~~~~I~~~a~~~~~dliV~g~~~ 132 (166)
...+.+...|..+ +.+..+ + .+..|.+.++++++|+|++|...
T Consensus 50 -------~~~~~~~~~Gad~--v~~v~~~~~~~~~~~~~a~~l~~~i~~~~p~~Vl~g~t~ 101 (217)
T 3ih5_A 50 -------EIEKQILPYGVDK--LHVFDAEGLYPYTSLPHTSILVNLFKEEQPQICLMGATV 101 (217)
T ss_dssp -------TTHHHHGGGTCSE--EEEEECGGGSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred -------HHHHHHHhcCCCE--EEEecCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 0011123357762 222221 1 35678899999999999999753
No 57
>3kcq_A Phosphoribosylglycinamide formyltransferase; structural genomics, niaid, seattle structural center for infectious disease, ssgcid; 2.20A {Anaplasma phagocytophilum} SCOP: c.65.1.0
Probab=89.19 E-value=3.9 Score=28.34 Aligned_cols=85 Identities=11% Similarity=-0.006 Sum_probs=50.4
Q ss_pred CCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 044140 6 KPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKV 85 (166)
Q Consensus 6 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (166)
.+||.|-+.++.....++-.+..- . ..++ ++.+|-. ..+.. .
T Consensus 8 ~~ri~vl~SG~gsnl~all~~~~~-~-~~~~----~I~~Vis--~~~~a------------~------------------ 49 (215)
T 3kcq_A 8 ELRVGVLISGRGSNLEALAKAFST-E-ESSV----VISCVIS--NNAEA------------R------------------ 49 (215)
T ss_dssp CEEEEEEESSCCHHHHHHHHHTCC-C--CSE----EEEEEEE--SCTTC------------T------------------
T ss_pred CCEEEEEEECCcHHHHHHHHHHHc-C-CCCc----EEEEEEe--CCcch------------H------------------
Confidence 468999999998777766555421 1 2233 5555433 21111 0
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccC
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~ 132 (166)
..+.+.+.|++ +...-...-...++.+..++.++|+||+....
T Consensus 50 ---~l~~A~~~gIp-~~~~~~~~~~~~~~~~~L~~~~~Dlivlagy~ 92 (215)
T 3kcq_A 50 ---GLLIAQSYGIP-TFVVKRKPLDIEHISTVLREHDVDLVCLAGFM 92 (215)
T ss_dssp ---HHHHHHHTTCC-EEECCBTTBCHHHHHHHHHHTTCSEEEESSCC
T ss_pred ---HHHHHHHcCCC-EEEeCcccCChHHHHHHHHHhCCCEEEEeCCc
Confidence 01456677888 44321111123788999999999999998664
No 58
>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}
Probab=88.99 E-value=4 Score=27.75 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=28.5
Q ss_pred CCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecC
Q 044140 6 KPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPN 50 (166)
Q Consensus 6 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~ 50 (166)
.++++|++.+..+|..++..+.+. +. +++.+|+...
T Consensus 3 ~~~v~v~lSGG~DS~~ll~ll~~~-----~~----~v~~~~~~~~ 38 (219)
T 3bl5_A 3 KEKAIVVFSGGQDSTTCLLWALKE-----FE----EVETVTFHYN 38 (219)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHH-----CS----EEEEEEEESS
T ss_pred CCCEEEEccCcHHHHHHHHHHHHc-----CC----ceEEEEEeCC
Confidence 468999999999999888877553 23 8889998753
No 59
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=88.62 E-value=1.2 Score=26.87 Aligned_cols=52 Identities=12% Similarity=0.026 Sum_probs=34.5
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCC----ccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGY----GAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~----~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.....|.+++++++++.||+|-... .+......-..+++|-.. +.||..+-.
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV~~~DE 93 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEVELWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCEEEECC
Confidence 4467899999999999999994421 111111223456677666 899988754
No 60
>2j4d_A Cryptochrome 3, cryptochrome DASH; DNA-binding protein, flavoprotein, FAD, mitochondrion, plastid, chromophore, chloroplast; HET: FAD MHF; 1.9A {Arabidopsis thaliana} PDB: 2vtb_A* 2ijg_X* 2vtb_B*
Probab=87.23 E-value=9.5 Score=30.09 Aligned_cols=129 Identities=9% Similarity=-0.037 Sum_probs=74.9
Q ss_pred CEEEEEE--cCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCC--CCCCCCCCCchhhHHHHHHHHHHHH
Q 044140 7 PIMMVAI--DDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGL--SGAGQGSAGSAHVINLVELDTKKRA 82 (166)
Q Consensus 7 ~~Ilv~v--d~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
+..|+=+ |..-....+|..|++.+ . .|..|++.++....... .... .. .......
T Consensus 40 ~~~l~WfrrDLRl~DN~AL~~A~~~~-----~----~v~~vfi~dp~~~~~~~~~~~~~----~~--------~~r~~Fl 98 (525)
T 2j4d_A 40 GVTILWFRNDLRVLDNDALYKAWSSS-----D----TILPVYCLDPRLFHTTHFFNFPK----TG--------ALRGGFL 98 (525)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHHTC-----S----EEEEEEEECGGGGSBCTTTCCBS----SC--------HHHHHHH
T ss_pred CeEEEEeCCCcCcchhHHHHHHHhcC-----C----cEEEEEEECchhhcccccccCCC----CC--------HHHHHHH
Confidence 3455555 44455667777776532 3 78888888753321100 0000 00 2223344
Q ss_pred HHHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCC--ccEEEEc
Q 044140 83 QKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCS--CTVMIVK 160 (166)
Q Consensus 83 ~~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~--~pVlvv~ 160 (166)
.+.+..+.+.+++.|+. ..++.|++.+.|.+.+++.+++.|+.-..- ....+..-.. ..+.+.... |++..+.
T Consensus 99 ~~sL~~L~~~L~~~G~~---L~v~~g~~~~~l~~l~~~~~~~~V~~~~~~-~p~~~~rd~~-v~~~l~~~gv~i~~~~~~ 173 (525)
T 2j4d_A 99 MECLVDLRKNLMKRGLN---LLIRSGKPEEILPSLAKDFGARTVFAHKET-CSEEVDVERL-VNQGLKRVGNSTKLELIW 173 (525)
T ss_dssp HHHHHHHHHHHHHTTCC---CEEEESCHHHHHHHHHHHHTCSEEEEECCC-SHHHHHHHHH-HHHHHHTTCSSCEEEEEC
T ss_pred HHHHHHHHHHHHHcCCe---EEEEeCCHHHHHHHHHHHcCCCEEEEeccC-CHHHHHHHHH-HHHHHHhcCCceEEEEec
Confidence 55566777777777887 455679999999999999999999986442 2222222222 333445555 7777665
Q ss_pred C
Q 044140 161 M 161 (166)
Q Consensus 161 ~ 161 (166)
.
T Consensus 174 ~ 174 (525)
T 2j4d_A 174 G 174 (525)
T ss_dssp C
T ss_pred C
Confidence 4
No 61
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=87.05 E-value=5.7 Score=27.36 Aligned_cols=87 Identities=13% Similarity=0.161 Sum_probs=52.6
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 044140 4 QTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQ 83 (166)
Q Consensus 4 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (166)
|..+||.|-+.++.....++-.++.- . ..++ ++.+|-...+ ...
T Consensus 5 m~~~ri~vl~SG~gsnl~all~~~~~-~-~l~~----~I~~Visn~~-~a~----------------------------- 48 (209)
T 4ds3_A 5 MKRNRVVIFISGGGSNMEALIRAAQA-P-GFPA----EIVAVFSDKA-EAG----------------------------- 48 (209)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHTS-T-TCSE----EEEEEEESCT-TCT-----------------------------
T ss_pred CCCccEEEEEECCcHHHHHHHHHHHc-C-CCCc----EEEEEEECCc-ccH-----------------------------
Confidence 55578999999998877776666532 2 2334 6655544211 100
Q ss_pred HHHHHHHHHHHhCCCCcccEEeec--CCc---hhHHHHHHhhhCCcEEEEcccC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQ--GDP---RNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~--g~~---~~~I~~~a~~~~~dliV~g~~~ 132 (166)
..+.+++.|++ +...-.. .+. ..++.+..++.++|+||+...+
T Consensus 49 -----~l~~A~~~gIp-~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 96 (209)
T 4ds3_A 49 -----GLAKAEAAGIA-TQVFKRKDFASKEAHEDAILAALDVLKPDIICLAGYM 96 (209)
T ss_dssp -----HHHHHHHTTCC-EEECCGGGSSSHHHHHHHHHHHHHHHCCSEEEESSCC
T ss_pred -----HHHHHHHcCCC-EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 01456677988 4432111 111 2678899999999999998654
No 62
>3fy4_A 6-4 photolyase; DNA repair, clock cryptochrome; HET: MES FAD; 2.70A {Arabidopsis thaliana}
Probab=86.97 E-value=5.3 Score=31.70 Aligned_cols=128 Identities=12% Similarity=0.049 Sum_probs=74.1
Q ss_pred CEEEEEE--cCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcC-----CCCCCCCCCCchhhHHHHHHHHH
Q 044140 7 PIMMVAI--DDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLG-----LSGAGQGSAGSAHVINLVELDTK 79 (166)
Q Consensus 7 ~~Ilv~v--d~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 79 (166)
+.+|+=. |..-....||..|++. +. .|..|+|.++...... .+... .. ....
T Consensus 5 ~~~lvWFRrDLRl~DN~AL~~A~~~-----~~----~vlpvfi~dp~~~~~~~~~~~~g~~~----~g--------~~r~ 63 (537)
T 3fy4_A 5 SGSLIWFRKGLRVHDNPALEYASKG-----SE----FMYPVFVIDPHYMESDPSAFSPGSSR----AG--------VNRI 63 (537)
T ss_dssp CEEEEEESSCCCSTTCHHHHHHHTT-----CS----CEEEEEEECHHHHSCCTTSSSSBCSS----CB--------HHHH
T ss_pred CcEEEEeCCCcccchhHHHHHHHhc-----CC----CEEEEEEeChhhhccccccccccccc----CC--------HHHH
Confidence 4444444 4555566777777531 23 7889999864321100 00000 00 2223
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEE
Q 044140 80 KRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 159 (166)
....+.+..+.+.+++.|+. ..++.|++.+.|.+.+++.+++.|+.... .+...... -....+.+....+++..+
T Consensus 64 ~Fl~~sL~~L~~~L~~~G~~---L~v~~G~~~~vl~~L~~~~~~~~V~~n~~-~~p~~~~R-D~~v~~~l~~~gI~~~~~ 138 (537)
T 3fy4_A 64 RFLLESLKDLDSSLKKLGSR---LLVFKGEPGEVLVRCLQEWKVKRLCFEYD-TDPYYQAL-DVKVKDYASSTGVEVFSP 138 (537)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---CEEEESCHHHHHHHHHTTSCEEEEEECCC-CSHHHHHH-HHHHHHHHHHTTCEEECC
T ss_pred HHHHHHHHHHHHHHHHcCCc---eEEEECCHHHHHHHHHHHcCCCEEEEecc-ccHHHHHH-HHHHHHHHHHcCCeEEEe
Confidence 44455566777777777877 55667999999999999999999998654 22222111 223344555566766554
Q ss_pred c
Q 044140 160 K 160 (166)
Q Consensus 160 ~ 160 (166)
.
T Consensus 139 ~ 139 (537)
T 3fy4_A 139 V 139 (537)
T ss_dssp C
T ss_pred c
Confidence 4
No 63
>2e0i_A 432AA long hypothetical deoxyribodipyrimidine PHO; photolyase, FAD, DNA repair, lyase; HET: FAD; 2.80A {Sulfolobus tokodaii}
Probab=86.54 E-value=7.7 Score=29.91 Aligned_cols=116 Identities=7% Similarity=-0.020 Sum_probs=69.5
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCC-CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 044140 14 DDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGL-SGAGQGSAGSAHVINLVELDTKKRAQKVADKATSI 92 (166)
Q Consensus 14 d~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (166)
|..-....||..|++. +. .|..|++.++....... .+ ........+.+..+.+.
T Consensus 10 DLRl~DN~aL~~A~~~-----~~----~v~~vfi~dp~~~~~~~~~~----------------~~r~~Fl~~sL~~L~~~ 64 (440)
T 2e0i_A 10 DLRLEDNTGLNYALSE-----CD----RVIPVFIADPRQLINNPYKS----------------EFAVSFMINSLLELDDE 64 (440)
T ss_dssp CCCSSSCHHHHHHHHH-----SS----EEEEEEEECHHHHSSCTTCC----------------HHHHHHHHHHHHHHHHH
T ss_pred CCccchhHHHHHHHhc-----CC----CEEEEEEeChhhhccCCcCC----------------HHHHHHHHHHHHHHHHH
Confidence 3334455677777663 23 88999998643211100 00 22234445556777777
Q ss_pred HHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 93 CAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 93 ~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
+++.|++ ..++.|++.+.|.+.++ +++.|+....- ....... -....+.+....|++..+..
T Consensus 65 L~~~G~~---L~v~~g~~~~~l~~l~~--~~~~v~~~~~~-~~~~~~r-d~~v~~~l~~~gi~~~~~~~ 126 (440)
T 2e0i_A 65 LRKKGSR---LNVFFGEAEKVVSRFFN--KVDAIYVNEDY-TPFSISR-DEKIRKVCEENGIEFKAYED 126 (440)
T ss_dssp HHTTTCC---CEEEESCHHHHHHHHCT--TCSEEEEECCC-SHHHHHH-HHHHHHHHHTTTCEEEEECC
T ss_pred HHHcCCe---EEEEECCHHHHHHHHHc--CCCEEEEeccc-ChHHHHH-HHHHHHHHHHcCceEEEecC
Confidence 7777877 45567999999999999 99998886442 2222222 22334455666788877654
No 64
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=85.79 E-value=2.9 Score=30.57 Aligned_cols=94 Identities=7% Similarity=0.080 Sum_probs=55.2
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCC----------------C-CCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchh
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPP----------------F-APNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAH 69 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~----------------~-~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~ 69 (166)
.+|+|+++|..+|...+..+.+...+. + +. .+.++|+......
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~----~i~vv~iDtg~~f---------------- 113 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQ----RLPTVFIDQEETF---------------- 113 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCC----CEEEEECCCTTCC----------------
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCC----CeeEEEEeCCCCC----------------
Confidence 479999999999999998887753100 1 23 6888888543211
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccEEeec----CCchhHHHHHHhhh-CCcEEEEcccCCc
Q 044140 70 VINLVELDTKKRAQKVADKATSICAKREVNDMPVHVMQ----GDPRNVMTEAVERF-HPTILVLGSHGYG 134 (166)
Q Consensus 70 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~v~~----g~~~~~I~~~a~~~-~~dliV~g~~~~~ 134 (166)
. +..+-+.+.+++.|++ +.+.... ....+.+.++++.. ..+.|++|.+...
T Consensus 114 ------p-------et~~fv~~~~~~ygl~-l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 114 ------P-------TLENFVLETSERYCLS-LYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp ------H-------HHHHHHHHHHHHTTEE-EEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred ------H-------HHHHHHHHHHHHcCCC-EEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 1 1112222333445666 4322111 23456667777663 6789999987543
No 65
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=84.22 E-value=9.3 Score=27.26 Aligned_cols=85 Identities=18% Similarity=0.298 Sum_probs=49.4
Q ss_pred EEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 044140 12 AIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKATS 91 (166)
Q Consensus 12 ~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (166)
+.-.++.+..+++.|.+++. .++.. .+++++.+-+.. ++..+..
T Consensus 32 ~~~lnp~d~~ale~A~~Lke-~~g~~--~~V~av~~G~~~------------------------------~~~~lr~--- 75 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKE-SSDTD--VEVVVVSVGPDR------------------------------VDESLRK--- 75 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHH-HCSSC--CEEEEEEESCGG------------------------------GHHHHHH---
T ss_pred CCccCHHHHHHHHHHHHHHH-hcCCC--ceEEEEEeCchh------------------------------HHHHHHH---
Confidence 33345779999999999986 44320 178888774310 0111111
Q ss_pred HHHhCCCCcccEEeec----C-C---chhHHHHHHhhhCCcEEEEcccCCc
Q 044140 92 ICAKREVNDMPVHVMQ----G-D---PRNVMTEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 92 ~~~~~~i~~~~~~v~~----g-~---~~~~I~~~a~~~~~dliV~g~~~~~ 134 (166)
. ...|..+ -+++.. + + .+..|...+++.++|+|++|....+
T Consensus 76 a-la~GaD~-vi~v~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 124 (264)
T 1o97_C 76 C-LAKGADR-AVRVWDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQSSD 124 (264)
T ss_dssp H-HHTTCSE-EEEECCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCCTT
T ss_pred H-HhcCCCE-EEEEcCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 2 2236662 122211 1 2 2456778888889999999987644
No 66
>2h31_A Multifunctional protein ADE2; alpha-beta-alpha, ligase, lyase; 2.80A {Homo sapiens}
Probab=84.09 E-value=4.5 Score=31.10 Aligned_cols=68 Identities=10% Similarity=0.056 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCCCcccEEeecC-CchhHHHHH---HhhhCC-cEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 86 ADKATSICAKREVNDMPVHVMQG-DPRNVMTEA---VERFHP-TILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~---a~~~~~-dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.+.+...+...|++ +++.+..- ...+.+.++ ++..++ +.||.+......+.. -+...+.+||+-||
T Consensus 281 ~~~a~~~l~~~gi~-~~v~V~saHR~p~~~~~~~~~~~~~g~~~viIa~AG~~a~Lpg--------vva~~t~~PVIgvP 351 (425)
T 2h31_A 281 CEKIKKACGNFGIP-CELRVTSAHKGPDETLRIKAEYEGDGIPTVFVAVAGRSNGLGP--------VMSGNTAYPVISCP 351 (425)
T ss_dssp HHHHHHHHHHTTCC-EEEEECCTTTCHHHHHHHHHHHHTTCCCEEEEEECCSSCCHHH--------HHHHHCSSCEEECC
T ss_pred HHHHHHHHHHcCCc-eEEeeeeccCCHHHHHHHHHHHHHCCCCeEEEEEcCcccchHh--------HHhccCCCCEEEee
Confidence 45666667778999 88888763 444444444 445667 688888766554432 34557899999999
Q ss_pred CC
Q 044140 161 MP 162 (166)
Q Consensus 161 ~~ 162 (166)
..
T Consensus 352 ~~ 353 (425)
T 2h31_A 352 PL 353 (425)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 67
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=83.92 E-value=1.7 Score=27.89 Aligned_cols=52 Identities=10% Similarity=0.115 Sum_probs=34.7
Q ss_pred CchhHHHHHHhhhCCcEEEEcccC----CccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHG----YGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~----~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.....|.+++++++++.||+|-+. ..+......-..++.|-...+.||..+-
T Consensus 40 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~~~lpV~~~D 95 (138)
T 1nu0_A 40 PDWNIIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVEVKLHD 95 (138)
T ss_dssp ECHHHHHHHHHHHCCSEEEEEEEECTTSCBCHHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred hHHHHHHHHHHHcCCCEEEEecccCCCcCcCHHHHHHHHHHHHHHHHhCCCEEEEc
Confidence 347899999999999999999442 1111111223455666555688998874
No 68
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=83.58 E-value=8.9 Score=26.51 Aligned_cols=85 Identities=14% Similarity=0.114 Sum_probs=52.2
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 044140 4 QTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQ 83 (166)
Q Consensus 4 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (166)
.+++||.|-+.++..+..++-.+.. . ..++ ++.+| +.... .
T Consensus 10 ~~~~ri~vl~SG~gsnl~all~~~~--~-~~~~----eI~~V--is~~~-a----------------------------- 50 (215)
T 3da8_A 10 SAPARLVVLASGTGSLLRSLLDAAV--G-DYPA----RVVAV--GVDRE-C----------------------------- 50 (215)
T ss_dssp CSSEEEEEEESSCCHHHHHHHHHSS--T-TCSE----EEEEE--EESSC-C-----------------------------
T ss_pred CCCcEEEEEEeCChHHHHHHHHHHh--c-cCCC----eEEEE--EeCCc-h-----------------------------
Confidence 4557899999999877777655542 2 2334 66555 32221 1
Q ss_pred HHHHHHHHHHHhCCCCcccEEeec--CCc---hhHHHHHHhhhCCcEEEEcccC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQ--GDP---RNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~--g~~---~~~I~~~a~~~~~dliV~g~~~ 132 (166)
...+++.+.|++ +...-.. .+. ..++.+..++.++|+||+...+
T Consensus 51 ----~~~~~A~~~gIp-~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dlivlagy~ 99 (215)
T 3da8_A 51 ----RAAEIAAEASVP-VFTVRLADHPSRDAWDVAITAATAAHEPDLVVSAGFM 99 (215)
T ss_dssp ----HHHHHHHHTTCC-EEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEEEECC
T ss_pred ----HHHHHHHHcCCC-EEEeCcccccchhhhhHHHHHHHHhhCCCEEEEcCch
Confidence 113456677888 5433111 111 3578889999999999998664
No 69
>2p0y_A Hypothetical protein LP_0780; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 3.00A {Lactobacillus plantarum}
Probab=83.15 E-value=1.9 Score=32.12 Aligned_cols=50 Identities=12% Similarity=0.248 Sum_probs=36.1
Q ss_pred CchhHHHHHHhhhCCcEEEEcccC-Cccchh-hhcccHHHHHhhcCCccEEEEcC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHG-YGAVKR-AVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~-~~~~~~-~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+..+.++.++ ++|+||+|-.+ .+.+.. +++..+.+. ++++++|++.|.+
T Consensus 177 ~a~p~al~AI~--~AD~IvlgPGSlyTSI~P~Llv~gi~~A-i~~s~A~kV~V~N 228 (341)
T 2p0y_A 177 QAVQPVIDAIM--AADQIVLGPGSLFTSILPNLTIGNIGRA-VCESDAEVVYICN 228 (341)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCCCCCCHHHHSSHHHHHH-HHHCSSEEEEECC
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCccHHHH-HHhCCCCEEEEeC
Confidence 34566888888 89999999654 444444 445555555 7889999999976
No 70
>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}
Probab=82.93 E-value=14 Score=28.27 Aligned_cols=36 Identities=14% Similarity=0.160 Sum_probs=29.0
Q ss_pred CCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecC
Q 044140 6 KPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPN 50 (166)
Q Consensus 6 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~ 50 (166)
.+++++++.+.-+|..++.++.+. +. +|+.+|+...
T Consensus 5 ~~kVvvalSGGlDSsvll~lL~e~-----G~----eV~av~vd~g 40 (413)
T 2nz2_A 5 KGSVVLAYSGGLDTSCILVWLKEQ-----GY----DVIAYLANIG 40 (413)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHT-----TE----EEEEEEEESS
T ss_pred CCeEEEEEcChHHHHHHHHHHHHc-----CC----EEEEEEEECC
Confidence 478999999999999888877542 45 8999999654
No 71
>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*
Probab=82.91 E-value=15 Score=28.78 Aligned_cols=34 Identities=6% Similarity=-0.035 Sum_probs=28.2
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeec
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARP 49 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~ 49 (166)
+++++++.+..+|..++..+.+. +. +++++|+..
T Consensus 210 ~kvvvalSGGvDSsvla~ll~~~-----g~----~v~av~vd~ 243 (503)
T 2ywb_A 210 DRVLLAVSGGVDSSTLALLLAKA-----GV----DHLAVFVDH 243 (503)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHH-----TC----EEEEEEEEC
T ss_pred ccEEEEecCCcchHHHHHHHHHc-----CC----eEEEEEEeC
Confidence 68999999999999888777654 34 899999865
No 72
>3p9x_A Phosphoribosylglycinamide formyltransferase; structural genomics, PSI-biology, protein STRU initiative; 1.90A {Bacillus halodurans}
Probab=82.86 E-value=9.4 Score=26.31 Aligned_cols=84 Identities=8% Similarity=-0.026 Sum_probs=54.3
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVA 86 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (166)
+||.|-+.++-.+..++-.+.+-- ..++ ++.+|-...+.
T Consensus 3 ~riavl~Sg~Gsnl~ali~~~~~~--~l~~----eI~~Visn~~~----------------------------------- 41 (211)
T 3p9x_A 3 KRVAIFASGSGTNAEAIIQSQKAG--QLPC----EVALLITDKPG----------------------------------- 41 (211)
T ss_dssp CEEEEECCTTCHHHHHHHHHHHTT--CCSS----EEEEEEESCSS-----------------------------------
T ss_pred CEEEEEEeCCchHHHHHHHHHHcC--CCCc----EEEEEEECCCC-----------------------------------
Confidence 789999999888888877766543 3445 77666442110
Q ss_pred HHHHHHHHhCCCCcccEEeec--CCc---hhHHHHHHhhhCCcEEEEcccC
Q 044140 87 DKATSICAKREVNDMPVHVMQ--GDP---RNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~v~~--g~~---~~~I~~~a~~~~~dliV~g~~~ 132 (166)
....+.+.+.|++ +...-.. .+. ..++.+..++.++|+||+...+
T Consensus 42 a~v~~~A~~~gIp-~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 91 (211)
T 3p9x_A 42 AKVVERVKVHEIP-VCALDPKTYPSKEAYEIEVVQQLKEKQIDFVVLAGYM 91 (211)
T ss_dssp SHHHHHHHTTTCC-EEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred cHHHHHHHHcCCC-EEEeChhhcCchhhhHHHHHHHHHhcCCCEEEEeCch
Confidence 0344566777888 4332111 111 3578899999999999998654
No 73
>3zqu_A Probable aromatic acid decarboxylase; lyase; HET: FNR; 1.50A {Pseudomonas aeruginosa} SCOP: c.34.1.0
Probab=82.72 E-value=2.2 Score=29.49 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=32.2
Q ss_pred CCCCCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEe
Q 044140 1 MGDQTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHA 47 (166)
Q Consensus 1 m~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v 47 (166)
|+.+ ++|++++.|+..+.++++..-.+.+ . +. +++++-.
T Consensus 1 m~~~--k~IllgvTGaiaa~k~~~ll~~L~~-~-g~----eV~vv~T 39 (209)
T 3zqu_A 1 MSGP--ERITLAMTGASGAQYGLRLLDCLVQ-E-ER----EVHFLIS 39 (209)
T ss_dssp CCSC--SEEEEEECSSSCHHHHHHHHHHHHH-T-TC----EEEEEEC
T ss_pred CCCC--CEEEEEEECHHHHHHHHHHHHHHHH-C-CC----EEEEEEC
Confidence 5555 8999999999999999999988877 4 66 8887743
No 74
>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}
Probab=82.67 E-value=10 Score=26.63 Aligned_cols=34 Identities=6% Similarity=-0.075 Sum_probs=26.8
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeec
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARP 49 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~ 49 (166)
.+|+|++.|..+|..++..+.+... .+.++|+..
T Consensus 46 ~~v~va~SGG~DS~vLL~ll~~~~~---------~v~vv~idt 79 (252)
T 2o8v_A 46 GEYVLSSSFGIQAAVSLHLVNQIRP---------DIPVILTDT 79 (252)
T ss_dssp SCEEEECCCSTTHHHHHHHHHHHST---------TCEEEECCC
T ss_pred CCEEEEeCCCHHHHHHHHHHHHhCC---------CCeEEEecC
Confidence 4799999999999999988877643 456777754
No 75
>2ppv_A Uncharacterized protein; putative phosphotransferase, structural genomics, joint CENT structural genomics, JCSG; 2.00A {Staphylococcus epidermidis}
Probab=82.61 E-value=2.2 Score=31.63 Aligned_cols=51 Identities=25% Similarity=0.363 Sum_probs=36.9
Q ss_pred CchhHHHHHHhhhCCcEEEEcccC-Cccchh-hhcccHHHHHhhcCCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHG-YGAVKR-AVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~-~~~~~~-~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
.+..+.++.++ ++|+||+|-.+ .+.+.. +++..+.+. ++++++|++.|.+-
T Consensus 166 ~~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N~ 218 (332)
T 2ppv_A 166 EPMNEAIEALE--QADLIVLGPGSLYTSVISNLCVKGISEA-LLRTSAPKLYVSNV 218 (332)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCCSCEEEECCS
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcCC
Confidence 34577888888 89999999654 444444 445555555 78899999999874
No 76
>2q7x_A UPF0052 protein SP_1565; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; HET: MLY MSE; 2.00A {Streptococcus pneumoniae}
Probab=81.81 E-value=2.3 Score=31.54 Aligned_cols=50 Identities=10% Similarity=0.182 Sum_probs=36.4
Q ss_pred CchhHHHHHHhhhCCcEEEEcccC-Cccchh-hhcccHHHHHhhcCCccEEEEcC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHG-YGAVKR-AVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~-~~~~~~-~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+..+.++.++ ++|+||+|-.+ ++.+.. +++..+.+. ++++++|++.|.+
T Consensus 173 ~a~p~al~AI~--~AD~IvlgPGSl~TSI~P~Llv~gi~~A-i~~s~A~kV~v~N 224 (326)
T 2q7x_A 173 LASRRVVQTIL--ESDMIVLGPGSLFTSILPNIVIXEIGRA-LLETXAEIAYVCN 224 (326)
T ss_dssp CBCSHHHHHHH--HCSEEEECSSCCCCCCHHHHTSHHHHHH-HHHCSSEEEEECC
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHHhhhhhhccHHHH-HHhccCceEEecc
Confidence 34567888888 89999999654 444444 445555555 7889999999976
No 77
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=81.72 E-value=3.4 Score=25.25 Aligned_cols=62 Identities=8% Similarity=0.056 Sum_probs=36.3
Q ss_pred HHHHHHHHhCCCCcccEEee-cCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 87 DKATSICAKREVNDMPVHVM-QGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~v~-~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
++..+.+++.|++ ++.... .+... +... ++|+|++|..-+.... . .+.......+||.++++
T Consensus 24 ~km~~~a~~~gi~-v~i~a~~~~~~~----~~~~--~~DvvLLgPQV~y~~~-----~-ik~~~~~~~ipV~vI~~ 86 (108)
T 3nbm_A 24 NAINEGANLTEVR-VIANSGAYGAHY----DIMG--VYDLIILAPQVRSYYR-----E-MKVDAERLGIQIVATRG 86 (108)
T ss_dssp HHHHHHHHHHTCS-EEEEEEETTSCT----TTGG--GCSEEEECGGGGGGHH-----H-HHHHHTTTTCEEEECCH
T ss_pred HHHHHHHHHCCCc-eEEEEcchHHHH----hhcc--CCCEEEEChHHHHHHH-----H-HHHHhhhcCCcEEEeCH
Confidence 3444445556888 766542 23322 2233 7999999966433222 2 24455566899999874
No 78
>2o2z_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, NAD-binding protein; HET: NAD; 2.60A {Bacillus halodurans} PDB: 2hzb_A
Probab=80.63 E-value=2.5 Score=31.27 Aligned_cols=51 Identities=14% Similarity=0.260 Sum_probs=37.3
Q ss_pred CchhHHHHHHhhhCCcEEEEcccC-Cccchh-hhcccHHHHHhhcCCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHG-YGAVKR-AVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~-~~~~~~-~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
.+..+.++.++ ++|+||+|-.+ .+.+.. +++..+.+. ++++++|++.|.+-
T Consensus 167 ~~~p~~l~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~A-i~~s~A~kV~v~Nl 219 (323)
T 2o2z_A 167 KPLREGLEAIR--KADVIVIGPGSLYTSVLPNLLVPGICEA-IKQSTARKVYICNV 219 (323)
T ss_dssp CCCHHHHHHHH--HCSEEEECSSCTTTTHHHHHTSTTHHHH-HHHCCSEEEEECCS
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHhcccccCchHHHH-HHhCCCCEEEEcCC
Confidence 34577888888 89999999654 444443 455666665 68889999999864
No 79
>1g63_A Epidermin modifying enzyme EPID; alpha, beta protein, rossmann like fold, oxidoreductase; HET: FMN; 2.50A {Staphylococcus epidermidis} SCOP: c.34.1.1 PDB: 1g5q_A*
Probab=80.60 E-value=2.2 Score=28.75 Aligned_cols=37 Identities=3% Similarity=0.016 Sum_probs=30.5
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEe
Q 044140 5 TKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHA 47 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v 47 (166)
|++||++++.|+..+.++.+..-.+.+ . +. +++++-.
T Consensus 1 ~~k~IllgvTGs~aa~k~~~l~~~L~~-~-g~----~V~vv~T 37 (181)
T 1g63_A 1 MYGKLLICATASINVININHYIVELKQ-H-FD----EVNILFS 37 (181)
T ss_dssp CCCCEEEEECSCGGGGGHHHHHHHHTT-T-SS----CEEEEEC
T ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHH-C-CC----EEEEEEc
Confidence 358999999999999999999988866 4 66 7877754
No 80
>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A
Probab=79.34 E-value=7.8 Score=28.48 Aligned_cols=70 Identities=13% Similarity=0.043 Sum_probs=40.8
Q ss_pred HHHHHHHHHhCCCCcccEEeecC-CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHh-hcCCccEEEEcCC
Q 044140 86 ADKATSICAKREVNDMPVHVMQG-DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSA-HHCSCTVMIVKMP 162 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~-~~~~~pVlvv~~~ 162 (166)
.+++...+.+.|+. +....... ..+..+.+.+...++|+||+... -+ .+..++..++ ....+|+.++|..
T Consensus 44 ~~~i~~~L~~~g~~-~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GG-DG-----Tv~~v~~~l~~~~~~~pl~iIP~G 115 (337)
T 2qv7_A 44 LPDALIKLEKAGYE-TSAYATEKIGDATLEAERAMHENYDVLIAAGG-DG-----TLNEVVNGIAEKPNRPKLGVIPMG 115 (337)
T ss_dssp HHHHHHHHHHTTEE-EEEEECCSTTHHHHHHHHHTTTTCSEEEEEEC-HH-----HHHHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHHcCCe-EEEEEecCcchHHHHHHHHhhcCCCEEEEEcC-ch-----HHHHHHHHHHhCCCCCcEEEecCC
Confidence 34556666667777 66554443 34455555555557898776522 22 2233455553 3567999999964
No 81
>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8
Probab=79.06 E-value=1.6 Score=28.44 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=33.9
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCC----ccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGY----GAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~----~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
...+.|.+.+++++++.||+|-.-. ......-.-.++..+....++||..+-.
T Consensus 42 ~~~~~l~~li~~~~~~~ivVGlP~~~nGt~~~~~~~ar~f~~~L~~~~~lpV~~vDE 98 (150)
T 1vhx_A 42 YGLSRLSELIKDYTIDKIVLGFPKNMNGTVGPRGEASQTFAKVLETTYNVPVVLWDE 98 (150)
T ss_dssp CCHHHHHHHHTTSEEEEEEEECCCCBTTBCCHHHHHHHHHHHHHHHHHCSCEEEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeeecCCcchhHHHHHHHHHHHHHHHhhCCCEEEecC
Confidence 5678899999999999999994411 1111111123444555556899988753
No 82
>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A
Probab=78.88 E-value=8.4 Score=28.09 Aligned_cols=36 Identities=14% Similarity=0.046 Sum_probs=28.5
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecC
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPN 50 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~ 50 (166)
++++|++.|..+|..++..+.+... . +++++|+...
T Consensus 21 ~kvlvalSGGvDSsvla~ll~~~~g----~----~v~av~vd~g 56 (308)
T 2dpl_A 21 SKAIIALSGGVDSSTAAVLAHKAIG----D----RLHAVFVNTG 56 (308)
T ss_dssp SCEEEECCSSHHHHHHHHHHHHHHG----G----GEEEEEEECS
T ss_pred CCEEEEEeChHHHHHHHHHHHHhhC----C----CEEEEEEcCC
Confidence 6899999999999988887766533 3 7888988653
No 83
>1u3d_A Cryptochrome 1 apoprotein; photolyase, AMPPNP, signaling protein; HET: FAD ANP NDS; 2.45A {Arabidopsis thaliana} SCOP: a.99.1.1 c.28.1.1 PDB: 1u3c_A*
Probab=78.66 E-value=22 Score=27.86 Aligned_cols=123 Identities=9% Similarity=-0.038 Sum_probs=72.3
Q ss_pred EEEEEE--cCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 044140 8 IMMVAI--DDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKV 85 (166)
Q Consensus 8 ~Ilv~v--d~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (166)
+.|+=+ |..-....+|..|++. . .+..|++.++......... ........+.
T Consensus 13 ~~l~WfrrDLRl~DN~aL~~A~~~-~---------~v~pvfi~dp~~~~~~~~~----------------~~~~~fl~~s 66 (509)
T 1u3d_A 13 CSIVWFRRDLRVEDNPALAAAVRA-G---------PVIALFVWAPEEEGHYHPG----------------RVSRWWLKNS 66 (509)
T ss_dssp CEEEEESSCCCSTTCHHHHHHHHH-S---------CEEEEEEECGGGGTTCCCC----------------HHHHHHHHHH
T ss_pred cEEEEECCCCccchhHHHHHHHhC-C---------CEEEEEEECchhcccCCcc----------------hHHHHHHHHH
Confidence 344444 4445566777777653 2 4557777765322110000 1111244556
Q ss_pred HHHHHHHHHhCCCCcccEEeec-CCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 86 ADKATSICAKREVNDMPVHVMQ-GDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~-g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
+..+.+.+++.|++ ..++. |++.+.|.+.+++.+++.|+.... ........ -....+.+....|++..+..
T Consensus 67 L~~L~~~L~~~G~~---L~v~~~g~~~~~l~~l~~~~~~~~V~~~~~-~~p~~~~r-d~~v~~~l~~~gi~~~~~~~ 138 (509)
T 1u3d_A 67 LAQLDSSLRSLGTC---LITKRSTDSVASLLDVVKSTGASQIFFNHL-YDPLSLVR-DHRAKDVLTAQGIAVRSFNA 138 (509)
T ss_dssp HHHHHHHHHHTTCC---EEEEECSCHHHHHHHHHHHHTCCEEEEECC-CSHHHHHH-HHHHHHHHHTTTCEEEEECC
T ss_pred HHHHHHHHHHCCCe---EEEEeCCCHHHHHHHHHHHcCCCEEEEecc-cCHHHHHH-HHHHHHHHHHcCcEEEEECC
Confidence 67777777878888 34454 699999999999999999998643 22222111 22234455667888877754
No 84
>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*
Probab=78.63 E-value=20 Score=27.29 Aligned_cols=36 Identities=11% Similarity=0.254 Sum_probs=28.9
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecC
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPN 50 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~ 50 (166)
+++++++.+..+|..++.++.+.. +. +++++|+...
T Consensus 1 ~kVvva~SGG~DSsvll~ll~~~~----g~----~V~av~vd~g 36 (400)
T 1kor_A 1 MKIVLAYSGGLDTSIILKWLKETY----RA----EVIAFTADIG 36 (400)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH----TC----EEEEEEEESS
T ss_pred CcEEEEEeChHHHHHHHHHHHHhh----CC----cEEEEEEeCC
Confidence 479999999999999988876542 45 8999999754
No 85
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=78.13 E-value=9.7 Score=27.56 Aligned_cols=68 Identities=10% Similarity=0.012 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCCCcccEEeecC-CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh-cCCccEEEEcCC
Q 044140 87 DKATSICAKREVNDMPVHVMQG-DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH-HCSCTVMIVKMP 162 (166)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~~ 162 (166)
+++...+.+.++. +++..... ..+..+.+.+.+ ++|+||+... .+.+ ..+...+.. ..++|+.++|..
T Consensus 29 ~~i~~~l~~~~~~-~~~~~t~~~~~a~~~~~~~~~-~~d~vv~~GG-DGTl-----~~v~~~l~~~~~~~~l~iiP~G 98 (304)
T 3s40_A 29 TKIVPPLAAAFPD-LHILHTKEQGDATKYCQEFAS-KVDLIIVFGG-DGTV-----FECTNGLAPLEIRPTLAIIPGG 98 (304)
T ss_dssp HHHHHHHHHHCSE-EEEEECCSTTHHHHHHHHHTT-TCSEEEEEEC-HHHH-----HHHHHHHTTCSSCCEEEEEECS
T ss_pred HHHHHHHHHcCCe-EEEEEccCcchHHHHHHHhhc-CCCEEEEEcc-chHH-----HHHHHHHhhCCCCCcEEEecCC
Confidence 4455556666777 66655443 455556655543 7888777522 2222 234444444 367899999964
No 86
>1dnp_A DNA photolyase; DNA repair, electron transfer, excitation energy transfer, carbon-carbon, lyase (carbon-carbon); HET: DNA FAD MHF; 2.30A {Escherichia coli} SCOP: a.99.1.1 c.28.1.1
Probab=78.07 E-value=6.6 Score=30.52 Aligned_cols=51 Identities=6% Similarity=-0.002 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccEEee--cCCchhHHHHHHhhhCCcEEEEccc
Q 044140 80 KRAQKVADKATSICAKREVNDMPVHVM--QGDPRNVMTEAVERFHPTILVLGSH 131 (166)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~i~~~~~~v~--~g~~~~~I~~~a~~~~~dliV~g~~ 131 (166)
....+.+..+.+.+++.|+. +.+... .|++.+.|.+.+++.+++.|+....
T Consensus 52 ~fl~~sL~~L~~~L~~~G~~-L~v~~~~~~g~~~~~l~~l~~~~~~~~v~~~~~ 104 (471)
T 1dnp_A 52 ELINAQLNGLQIALAEKGIP-LLFREVDDFVASVEIVKQVCAENSVTHLFYNYQ 104 (471)
T ss_dssp HHHHHHHHHHHHHHHHTTCC-EEEEECSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHHCCCe-EEEEEccCCCCHHHHHHHHHHHcCCCEEEEecc
Confidence 34455566777777778888 444322 6899999999999999999998644
No 87
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=77.75 E-value=7.3 Score=29.09 Aligned_cols=69 Identities=12% Similarity=0.176 Sum_probs=42.1
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCch----hHHHHHHhhhCCcEEE-EcccCCccchhhhcccHHHHHhhcCCccEEEE
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPR----NVMTEAVERFHPTILV-LGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~----~~I~~~a~~~~~dliV-~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 159 (166)
..+++.+.+.+.|+. +...+..|++. +.+.+.+++.++|+|| +|...- +.++..+.....+|++.|
T Consensus 46 ~~~~v~~~L~~~g~~-~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv--------~D~aK~iA~~~~~p~i~I 116 (370)
T 1jq5_A 46 AGHTIVNELKKGNIA-AEEVVFSGEASRNEVERIANIARKAEAAIVIGVGGGKT--------LDTAKAVADELDAYIVIV 116 (370)
T ss_dssp THHHHHHHHHTTTCE-EEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHH--------HHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHcCCe-EEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHH--------HHHHHHHHHhcCCCEEEe
Confidence 455666677777887 65445556543 4566677888999988 653321 222233333347899999
Q ss_pred cCC
Q 044140 160 KMP 162 (166)
Q Consensus 160 ~~~ 162 (166)
|=.
T Consensus 117 PTT 119 (370)
T 1jq5_A 117 PTA 119 (370)
T ss_dssp ESS
T ss_pred ccc
Confidence 853
No 88
>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A
Probab=77.43 E-value=7.3 Score=27.41 Aligned_cols=91 Identities=13% Similarity=0.100 Sum_probs=49.3
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCC-CcCCCCCCCCCCCchhhHHHHHHHHHHHHHHH
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPS-LLGLSGAGQGSAGSAHVINLVELDTKKRAQKV 85 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (166)
.++++.+++..+|..++-.+. ..+- ++..++....... .+.+.. ..
T Consensus 5 MKvvvl~SGGkDSs~al~~l~-----~~G~----eV~~L~~~~~~~~~s~~~h~------------------------~~ 51 (237)
T 3rjz_A 5 ADVAVLYSGGKDSNYALYWAI-----KNRF----SVKFLVTMVSENEESYMYHT------------------------IN 51 (237)
T ss_dssp SEEEEECCSSHHHHHHHHHHH-----HTTC----EEEEEEEEECC--------C------------------------CS
T ss_pred CEEEEEecCcHHHHHHHHHHH-----HcCC----eEEEEEEEcCCCCCccccCC------------------------cc
Confidence 589999999999987766553 3344 7777765432211 100000 00
Q ss_pred HHHHHHHHHhCCCCcccEEeecCC---chhHHHHHHhhhCCcEEEEccc
Q 044140 86 ADKATSICAKREVNDMPVHVMQGD---PRNVMTEAVERFHPTILVLGSH 131 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~---~~~~I~~~a~~~~~dliV~g~~ 131 (166)
++.+...+...|++ ..+.-..|. -.+.+.+..++.+++.+|.|.-
T Consensus 52 ~e~a~~~A~~LGIp-l~~v~~~g~~~~e~e~l~~~l~~~~i~~vv~Gdi 99 (237)
T 3rjz_A 52 ANLTDLQARALGIP-LVKGFTQGEKEKEVEDLKRVLSGLKIQGIVAGAL 99 (237)
T ss_dssp SSHHHHHHHHHTCC-EEEEEC------CHHHHHHHHTTSCCSEEECC--
T ss_pred HHHHHHHHHHcCCC-EEEEECCCCchHHHHHHHHHHHhcCCcEEEECCc
Confidence 11222334445888 555444443 3556667777778899998864
No 89
>2j07_A Deoxyribodipyrimidine photo-lyase; flavoprotein, nucleotide-binding, DNA repair; HET: FAD HDF; 1.95A {Thermus thermophilus} SCOP: a.99.1.1 c.28.1.1 PDB: 1iqu_A* 1iqr_A* 2j08_A* 2j09_A*
Probab=76.98 E-value=22 Score=27.15 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEE
Q 044140 80 KRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 80 ~~~~~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 159 (166)
....+.+..+.+.+++.|++ ..+..|++.+.|.+.+++.+++.|+....- .......-..+.+ .+.|++..+
T Consensus 48 ~fl~~sL~~l~~~L~~~g~~---l~~~~g~~~~~l~~l~~~~~~~~v~~~~~~-~~~~~~rd~~v~~----~l~i~~~~~ 119 (420)
T 2j07_A 48 AWFLENVRALREAYRARGGA---LWVLEGLPWEKVPEAARRLKAKAVYALTSH-TPYGRYRDGRVRE----ALPVPLHLL 119 (420)
T ss_dssp HHHHHHHHHHHHHHHHTTCC---EEEEESCHHHHHHHHHHHTTCSEEEEECCC-SHHHHHHHHHHHH----HCSSCEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCe---EEEEeCCHHHHHHHHHHHcCCCEEEEeccc-ChhHHHHHHHHHH----HcCCeEEEe
Confidence 44455567777777777887 455679999999999999999999986442 2222222222222 227777776
Q ss_pred cC
Q 044140 160 KM 161 (166)
Q Consensus 160 ~~ 161 (166)
..
T Consensus 120 ~~ 121 (420)
T 2j07_A 120 PA 121 (420)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 90
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=76.78 E-value=17 Score=25.67 Aligned_cols=81 Identities=10% Similarity=0.104 Sum_probs=48.2
Q ss_pred CChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044140 15 DSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKATSICA 94 (166)
Q Consensus 15 ~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (166)
.++.+..+++.|.++.. . +.. .+++++.+-+.. ++..+..+ .
T Consensus 35 lnp~d~~Ale~A~~Lke-~-g~~--~~V~av~~G~~~------------------------------a~~~lr~a----l 76 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKE-K-GQA--EEIIAVSIGVKQ------------------------------AAETLRTA----L 76 (252)
T ss_dssp ECHHHHHHHHHHHHHHT-T-TSC--SEEEEEEEESGG------------------------------GHHHHHHH----H
T ss_pred CCHHHHHHHHHHHHHHh-c-CCC--ceEEEEEeCChh------------------------------HHHHHHHH----H
Confidence 35778999999999987 5 321 178888775310 01112222 1
Q ss_pred hCCCCcccEEee------cC-C---chhHHHHHHhhhCCcEEEEcccCCc
Q 044140 95 KREVNDMPVHVM------QG-D---PRNVMTEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 95 ~~~i~~~~~~v~------~g-~---~~~~I~~~a~~~~~dliV~g~~~~~ 134 (166)
..|.. --+++. .+ + .+..|...+++.++|+|++|....+
T Consensus 77 a~GaD-~vi~v~~d~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s~d 125 (252)
T 1efp_B 77 AMGAD-RAILVVAADDVQQDIEPLAVAKILAAVARAEGTELIIAGKQAID 125 (252)
T ss_dssp HHTCS-EEEEEECCSSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCCTT
T ss_pred hcCCC-EEEEEecChhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccC
Confidence 12666 222222 12 2 2456778888889999999987644
No 91
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=76.19 E-value=9.8 Score=27.05 Aligned_cols=103 Identities=9% Similarity=-0.017 Sum_probs=65.0
Q ss_pred EEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 044140 11 VAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKAT 90 (166)
Q Consensus 11 v~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (166)
|+..+.......++..+++|+ ..+. -+.-|.-.+....+.-..... + .+++.......+-.+.
T Consensus 33 IACGfHAGDp~~M~~tv~lA~-~~gV-----~IGAHPgypDl~GFGRR~m~~----s-------~~el~~~v~YQiGAL~ 95 (255)
T 1v6t_A 33 VACGWHAGDPLVMRKTVRLAK-ENDV-----QVGAHPGYPDLMGFGRRYMKL----T-------PEEARNYILYQVGALY 95 (255)
T ss_dssp EECSSSSCCHHHHHHHHHHHH-HTTC-----EEEEECCCSCTTTTTCSCCCC----C-------HHHHHHHHHHHHHHHH
T ss_pred hhccccCCCHHHHHHHHHHHH-HcCC-----eEecCCCCCcccCCCCCCCCC----C-------HHHHHHHHHHHHHHHH
Confidence 344455556678888899999 7664 345565544444433322111 1 1334444444556677
Q ss_pred HHHHhCCCCcccEEeecC----------CchhHHHHHHhhhCCcEEEEccc
Q 044140 91 SICAKREVNDMPVHVMQG----------DPRNVMTEAVERFHPTILVLGSH 131 (166)
Q Consensus 91 ~~~~~~~i~~~~~~v~~g----------~~~~~I~~~a~~~~~dliV~g~~ 131 (166)
..++..|.+ +.+.-.+| ..++.|++.+...+.+|+++|..
T Consensus 96 a~a~~~G~~-l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~ 145 (255)
T 1v6t_A 96 AFAKAEGLE-LQHVKPHGALYNAMVKEEDLARAVIEGILDFDKDLILVTLS 145 (255)
T ss_dssp HHHHHTTCC-EEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCEEEEET
T ss_pred HHHHHcCCE-eEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC
Confidence 777888888 66554443 34788999999999999999954
No 92
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=76.14 E-value=7.4 Score=25.23 Aligned_cols=47 Identities=21% Similarity=0.121 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCCcccEEeecCC-chhHHHHHHhhhCCcEEEEcccCCcc
Q 044140 86 ADKATSICAKREVNDMPVHVMQGD-PRNVMTEAVERFHPTILVLGSHGYGA 135 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~-~~~~I~~~a~~~~~dliV~g~~~~~~ 135 (166)
.+.+.+.+.+.|+. ++..-+... ....+..... ++|.||+|+..+.+
T Consensus 22 A~~ia~~l~~~g~~-v~~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~g 69 (159)
T 3fni_A 22 AQAIINGITKTGVG-VDVVDLGAAVDLQELRELVG--RCTGLVIGMSPAAS 69 (159)
T ss_dssp HHHHHHHHHHTTCE-EEEEESSSCCCHHHHHHHHH--TEEEEEEECCBTTS
T ss_pred HHHHHHHHHHCCCe-EEEEECcCcCCHHHHHHHHH--hCCEEEEEcCcCCC
Confidence 33444445556776 655443334 4555655555 79999999887653
No 93
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=75.79 E-value=13 Score=23.93 Aligned_cols=46 Identities=17% Similarity=0.110 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCcc
Q 044140 87 DKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGA 135 (166)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~ 135 (166)
+.+.+.+.+.|++ ++..-+.......+..... ++|.||+|+...++
T Consensus 19 ~~ia~~l~~~g~~-v~~~~~~~~~~~~~~~~~~--~~d~ii~Gspty~g 64 (161)
T 3hly_A 19 QAIGRGLVKTGVA-VEMVDLRAVDPQELIEAVS--SARGIVLGTPPSQP 64 (161)
T ss_dssp HHHHHHHHHTTCC-EEEEETTTCCHHHHHHHHH--HCSEEEEECCBSSC
T ss_pred HHHHHHHHhCCCe-EEEEECCCCCHHHHHHHHH--hCCEEEEEcCCcCC
Confidence 3444444556777 6554444444455554444 79999999887653
No 94
>2bon_A Lipid kinase; DAG kinase, transferase; 1.90A {Escherichia coli} SCOP: e.52.1.2 PDB: 2jgr_A 2p1r_A
Probab=75.69 E-value=18 Score=26.48 Aligned_cols=68 Identities=15% Similarity=0.162 Sum_probs=39.6
Q ss_pred HHHHHHHhCCCCcccEEeecC-CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh---cCCccEEEEcCC
Q 044140 88 KATSICAKREVNDMPVHVMQG-DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH---HCSCTVMIVKMP 162 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~~~ 162 (166)
++.+.+.+.|+. +.+..... .....+...+...++|+||+... .+ .+..++..+.. ...+|+.++|..
T Consensus 48 ~i~~~l~~~g~~-~~~~~t~~~~~~~~~~~~~~~~~~d~vvv~GG-DG-----Tl~~v~~~l~~~~~~~~~plgiiP~G 119 (332)
T 2bon_A 48 EAIMLLREEGMT-IHVRVTWEKGDAARYVEEARKFGVATVIAGGG-DG-----TINEVSTALIQCEGDDIPALGILPLG 119 (332)
T ss_dssp HHHHHHHTTTCC-EEEEECCSTTHHHHHHHHHHHHTCSEEEEEES-HH-----HHHHHHHHHHHCCSSCCCEEEEEECS
T ss_pred HHHHHHHHcCCc-EEEEEecCcchHHHHHHHHHhcCCCEEEEEcc-ch-----HHHHHHHHHhhcccCCCCeEEEecCc
Confidence 445566667887 66655442 33445554444457898776422 22 22345555553 567899999864
No 95
>2ywr_A Phosphoribosylglycinamide formyltransferase; rossmann fold, structural genomics, NPPSFA; 1.77A {Aquifex aeolicus}
Probab=75.35 E-value=17 Score=24.96 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=26.7
Q ss_pred HHHHHhCCCCcccEEeecC-Cc----hhHHHHHHhhhCCcEEEEcccC
Q 044140 90 TSICAKREVNDMPVHVMQG-DP----RNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 90 ~~~~~~~~i~~~~~~v~~g-~~----~~~I~~~a~~~~~dliV~g~~~ 132 (166)
.+.+.+.|++ +...-... .. ..++.+..++.++|+||+...+
T Consensus 44 ~~~A~~~gIp-~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 90 (216)
T 2ywr_A 44 IERCKKHNVE-CKVIQRKEFPSKKEFEERMALELKKKGVELVVLAGFM 90 (216)
T ss_dssp HHHHHHHTCC-EEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHcCCC-EEEeCcccccchhhhhHHHHHHHHhcCCCEEEEeCch
Confidence 3455667888 43211111 11 3578888999999999997653
No 96
>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1
Probab=74.79 E-value=26 Score=26.85 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=28.6
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecC
Q 044140 4 QTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPN 50 (166)
Q Consensus 4 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~ 50 (166)
.|.++++|++.+.-+|.-++.++.+. +. +++.+++...
T Consensus 12 ~~~~KVVVA~SGGlDSSv~a~~Lke~-----G~----eViavt~d~G 49 (421)
T 1vl2_A 12 HMKEKVVLAYSGGLDTSVILKWLCEK-----GF----DVIAYVANVG 49 (421)
T ss_dssp --CCEEEEECCSSHHHHHHHHHHHHT-----TC----EEEEEEEESS
T ss_pred cccCCEEEEeCCcHHHHHHHHHHHHC-----CC----eEEEEEEEcC
Confidence 35788999999999998887777432 45 8999988653
No 97
>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1
Probab=74.61 E-value=19 Score=26.27 Aligned_cols=34 Identities=15% Similarity=0.091 Sum_probs=25.2
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEee
Q 044140 5 TKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHAR 48 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~ 48 (166)
...++++.+.+ -+|.-++-.+ . ..|. +++.+|+.
T Consensus 178 ~~~kvlvllSG-vDS~vaa~ll----~-~~G~----~v~~v~~~ 211 (307)
T 1vbk_A 178 TEGRMIGILHD-ELSALAIFLM----M-KRGV----EVIPVYIG 211 (307)
T ss_dssp TTCEEEEECSS-HHHHHHHHHH----H-HBTC----EEEEEEES
T ss_pred CCCcEEEEEeC-CcHHHHHHHH----H-hCCC----eEEEEEEE
Confidence 34689999999 9887554433 3 3466 99999986
No 98
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=74.33 E-value=9.4 Score=27.05 Aligned_cols=119 Identities=13% Similarity=0.032 Sum_probs=72.5
Q ss_pred EEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 044140 11 VAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKAT 90 (166)
Q Consensus 11 v~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (166)
|+..+.......++..+++|+ ..+. -+.-|.-.+....+.-..... + .+++.......+-.+.
T Consensus 33 IACGfHAGDp~~M~~tv~lA~-~~gV-----~IGAHPgypDl~GFGRR~m~~----s-------~~el~~~v~YQiGAL~ 95 (250)
T 2dfa_A 33 LACGFHGGSPGRILEAVRLAK-AHGV-----AVGAHPGFPDLVGFGRREMAL----S-------PEEVYADVLYQIGALS 95 (250)
T ss_dssp EECSSSSCCHHHHHHHHHHHH-HTTC-----EEEEECCCSCTTTTTCSCCCC----C-------HHHHHHHHHHHHHHHH
T ss_pred hhccccCCCHHHHHHHHHHHH-HcCC-----eEecCCCCCcccCCCCCCCCC----C-------HHHHHHHHHHHHHHHH
Confidence 344455556678888899999 7664 345565544444433322111 1 1333444444456667
Q ss_pred HHHHhCCCCcccEEeecC----------CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEE
Q 044140 91 SICAKREVNDMPVHVMQG----------DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVM 157 (166)
Q Consensus 91 ~~~~~~~i~~~~~~v~~g----------~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVl 157 (166)
..++..|.+ +...-.+| ..++.|++.++..+.+|+++|.. ||...+..+....|++
T Consensus 96 a~a~~~G~~-l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~----------gs~~~~~A~~~Gl~~~ 161 (250)
T 2dfa_A 96 AFLKAEGLP-LHHVKPHGALYLKACRDRETARAIALAVKAFDPGLPLVVLP----------GTVYEEEARKAGLRVV 161 (250)
T ss_dssp HHHHHTTCC-CCCBCCCHHHHHHHHHCHHHHHHHHHHHHHHCTTCCEEECT----------TSHHHHHHHHTTCCEE
T ss_pred HHHHHcCCE-eEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC----------ChHHHHHHHHcCCcEE
Confidence 777777877 65544433 44788999999999999999944 4444555666666654
No 99
>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}
Probab=74.06 E-value=5.8 Score=31.32 Aligned_cols=35 Identities=14% Similarity=0.063 Sum_probs=28.2
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeec
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARP 49 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~ 49 (166)
+++++++.|.-+|.-++..+.+... . +++++|+..
T Consensus 231 ~kvlvalSGGvDSsvla~ll~~~~G----~----~v~av~vd~ 265 (527)
T 3tqi_A 231 EQVIVGLSGGVDSAVTATLVHKAIG----D----QLVCVLVDT 265 (527)
T ss_dssp SCEEEECTTTHHHHHHHHHHHHHHG----G----GEEEEEECC
T ss_pred CeEEEEEecCcCHHHHHHHHHHHhC----C----eEEEEEecc
Confidence 7899999999999888877765433 4 889999854
No 100
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=73.27 E-value=24 Score=25.71 Aligned_cols=84 Identities=10% Similarity=0.059 Sum_probs=53.1
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 044140 5 TKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQK 84 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (166)
..+||+|-+.++..+..++-.+.+-- ..++ ++.+|-...+.
T Consensus 104 ~~~ri~vl~Sg~g~nl~~ll~~~~~g--~l~~----~I~~Visn~~~--------------------------------- 144 (302)
T 3o1l_A 104 QKKRVVLMASRESHCLADLLHRWHSD--ELDC----DIACVISNHQD--------------------------------- 144 (302)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHTT--CSCS----EEEEEEESSST---------------------------------
T ss_pred CCcEEEEEEeCCchhHHHHHHHHHCC--CCCc----EEEEEEECcHH---------------------------------
Confidence 35789999999888877777665442 3445 76665442210
Q ss_pred HHHHHHHHHHhCCCCcccEEeec-CC---chhHHHHHHhhhCCcEEEEcccC
Q 044140 85 VADKATSICAKREVNDMPVHVMQ-GD---PRNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~-g~---~~~~I~~~a~~~~~dliV~g~~~ 132 (166)
+...+++.|++ +...-.. .+ ...++.+..++.++|+||+....
T Consensus 145 ----~~~~A~~~gIp-~~~~~~~~~~r~~~~~~~~~~l~~~~~DliVlagym 191 (302)
T 3o1l_A 145 ----LRSMVEWHDIP-YYHVPVDPKDKEPAFAEVSRLVGHHQADVVVLARYM 191 (302)
T ss_dssp ----THHHHHTTTCC-EEECCCCSSCCHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred ----HHHHHHHcCCC-EEEcCCCcCCHHHHHHHHHHHHHHhCCCEEEHhHhh
Confidence 11235677888 5432111 11 13568899999999999998664
No 101
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=73.16 E-value=15 Score=23.19 Aligned_cols=66 Identities=6% Similarity=-0.034 Sum_probs=40.8
Q ss_pred HHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcC--CccEEEE
Q 044140 90 TSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHC--SCTVMIV 159 (166)
Q Consensus 90 ~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~--~~pVlvv 159 (166)
...++..|.+ +.. .-...+.+.+++.++++++|+|.+......... .+..+.+.+-... .++|++=
T Consensus 24 ~~~l~~~G~~-Vi~-lG~~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~--~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 24 DHAFTNAGFN-VVN-IGVLSPQELFIKAAIETKADAILVSSLYGQGEI--DCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp HHHHHHTTCE-EEE-EEEEECHHHHHHHHHHHTCSEEEEEECSSTHHH--HHTTHHHHHHHTTCTTCEEEEE
T ss_pred HHHHHHCCCE-EEE-CCCCCCHHHHHHHHHhcCCCEEEEEecCcCcHH--HHHHHHHHHHhcCCCCCEEEEE
Confidence 3455556777 332 222478999999999999999999876433222 2344555543332 3666654
No 102
>1xw8_A UPF0271 protein YBGL; NESG, northeast structural genomics consortium, structural genomics, protein structure initiative, PSI, X-RAY; 2.00A {Escherichia coli} SCOP: c.6.2.5
Probab=73.07 E-value=10 Score=26.93 Aligned_cols=118 Identities=12% Similarity=0.020 Sum_probs=68.8
Q ss_pred EEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 044140 12 AIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKATS 91 (166)
Q Consensus 12 ~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (166)
+..+-......++..+++|+ ..+. -+.-|.-.+....+.-..... + .+++.......+-.+..
T Consensus 29 ACGfHAGDp~~M~~Tv~lA~-~~gV-----~IGAHPgypDl~GFGRR~m~~----s-------~~el~~~v~YQiGAL~a 91 (252)
T 1xw8_A 29 ACGFHAGDAQIMQACVREAI-KNGV-----AIGAHPSFPDRENFGRSAMQL----P-------PETVYAQTLYQIGALAT 91 (252)
T ss_dssp ECSSSSCCHHHHHHHHHHHH-HHTC-----EEEEECCCC-------CCCCC----C-------HHHHHHHHHHHHHHHHH
T ss_pred hhcccCCCHHHHHHHHHHHH-HcCC-----eeecCCCCCcccCCCCCCCCC----C-------HHHHHHHHHHHHHHHHH
Confidence 34444445667888888888 7663 344555444444333222111 1 13344444445566777
Q ss_pred HHHhCCCCcccEEeecC----------CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEE
Q 044140 92 ICAKREVNDMPVHVMQG----------DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVM 157 (166)
Q Consensus 92 ~~~~~~i~~~~~~v~~g----------~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVl 157 (166)
.++..|.+ +...-.+| ..++.|++.++..+.+|+++|.. ||...+..+....|++
T Consensus 92 ~a~~~G~~-l~hVKPHGALYN~~a~d~~~A~av~~av~~~d~~L~l~~l~----------gs~~~~~A~~~Gl~~~ 156 (252)
T 1xw8_A 92 IARAQGGV-MRHVKPHGMLYNQAAKEAQLADAIARAVYACDPALILVGLA----------GSELIRAGKQYGLTTR 156 (252)
T ss_dssp HHHHTTCC-EEEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCEEEEET----------TSHHHHHHHHTTCCEE
T ss_pred HHHHcCCE-eEEeCcCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEecC----------ChHHHHHHHHcCCcEE
Confidence 77888888 66544443 44788999999999999999954 3444555566666654
No 103
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=72.45 E-value=10 Score=25.64 Aligned_cols=48 Identities=15% Similarity=0.129 Sum_probs=29.2
Q ss_pred EEeecCCchhHHHHHHh-hhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 103 VHVMQGDPRNVMTEAVE-RFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 103 ~~v~~g~~~~~I~~~a~-~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
..+..++..+++...-+ ..++|.||-. |.++..|=++.+.||+-++..
T Consensus 31 i~i~~~~l~~~v~~a~~~~~~~dVIISR------------Ggta~~lr~~~~iPVV~I~~s 79 (196)
T 2q5c_A 31 PITKTASLTRASKIAFGLQDEVDAIISR------------GATSDYIKKSVSIPSISIKVT 79 (196)
T ss_dssp EEEEECCHHHHHHHHHHHTTTCSEEEEE------------HHHHHHHHTTCSSCEEEECCC
T ss_pred eEEEECCHHHHHHHHHHhcCCCeEEEEC------------ChHHHHHHHhCCCCEEEEcCC
Confidence 44555655444432222 4688855532 556777777788999988753
No 104
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=71.98 E-value=13 Score=22.04 Aligned_cols=34 Identities=6% Similarity=0.124 Sum_probs=16.3
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhh
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDPRNVMTEAVER 120 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~ 120 (166)
++.+....++.|.. +.+..-..+-...+-+.+++
T Consensus 90 leefsrevrrrgfe-vrtvtspddfkkslerlire 123 (134)
T 2l69_A 90 LEEFSREVRRRGFE-VRTVTSPDDFKKSLERLIRE 123 (134)
T ss_dssp HHHHHHHHHHTTCC-EEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCce-EEEecChHHHHHHHHHHHHH
Confidence 44455555556666 44433333444445444443
No 105
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=71.96 E-value=12 Score=25.52 Aligned_cols=74 Identities=11% Similarity=0.077 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEccc-CCccchhhhcccHHHHHhhcCCccEEEE
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSH-GYGAVKRAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~-~~~~~~~~~~gs~~~~l~~~~~~pVlvv 159 (166)
..++.+.+++++.|++++-+-...|..+....+.. .+..+|++..+ ++......-+..-..+-+.....+|+.-
T Consensus 30 ~tl~la~era~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t~ 104 (201)
T 1vp8_A 30 ETLRLAVERAKELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRGAKIVRQ 104 (201)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEEE
Confidence 34555666666668873333333466666666655 36889999855 3444444556677777788888887754
No 106
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=71.64 E-value=22 Score=24.63 Aligned_cols=62 Identities=15% Similarity=0.105 Sum_probs=38.3
Q ss_pred HHHHHHHhCCCCcccEEeecCCchhHHHHH---HhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 88 KATSICAKREVNDMPVHVMQGDPRNVMTEA---VERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~---a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
.+.+.+.+.+.. ..+.+..++..+++... ....++|.||-. |.++..|=++.+.||+-++..
T Consensus 27 ~~~~i~~e~~~~-~~I~vi~~~le~av~~a~~~~~~~~~dVIISR------------Ggta~~Lr~~~~iPVV~I~vs 91 (225)
T 2pju_A 27 LFRDISLEFDHL-ANITPIQLGFEKAVTYIRKKLANERCDAIIAA------------GSNGAYLKSRLSVPVILIKPS 91 (225)
T ss_dssp HHHHHHTTTTTT-CEEEEECCCHHHHHHHHHHHTTTSCCSEEEEE------------HHHHHHHHTTCSSCEEEECCC
T ss_pred HHHHHHHhhCCC-ceEEEecCcHHHHHHHHHHHHhcCCCeEEEeC------------ChHHHHHHhhCCCCEEEecCC
Confidence 344444555655 66777777665555433 222358855542 566777777789999988753
No 107
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=70.04 E-value=20 Score=23.34 Aligned_cols=65 Identities=5% Similarity=-0.046 Sum_probs=39.1
Q ss_pred HHHHHhCCCCcccEEeec-CCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcC--CccEEEE
Q 044140 90 TSICAKREVNDMPVHVMQ-GDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHC--SCTVMIV 159 (166)
Q Consensus 90 ~~~~~~~~i~~~~~~v~~-g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~--~~pVlvv 159 (166)
...++..|.+ +..+- ..+.+.+++.++++++|+|.+......... .+..+.+.+-... .++|++=
T Consensus 39 a~~l~~~G~e---Vi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~~--~~~~~i~~L~~~g~~~i~v~vG 106 (161)
T 2yxb_A 39 ARALRDAGFE---VVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHLH--LMKRLMAKLRELGADDIPVVLG 106 (161)
T ss_dssp HHHHHHTTCE---EECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHHH--HHHHHHHHHHHTTCTTSCEEEE
T ss_pred HHHHHHCCCE---EEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhHH--HHHHHHHHHHhcCCCCCEEEEe
Confidence 3345556766 32222 267899999999999999999876433222 2233444443332 3666653
No 108
>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1
Probab=69.98 E-value=24 Score=24.21 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=27.5
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeec
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARP 49 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~ 49 (166)
++++|.+.+..+|..++.++.+.. . +++.+|+..
T Consensus 3 ~kvvv~lSGG~DS~~~l~ll~~~~-----~----~v~av~~~~ 36 (232)
T 2pg3_A 3 KRAVVVFSGGQDSTTCLIQALQDY-----D----DVHCITFDY 36 (232)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHC-----S----EEEEEEEES
T ss_pred CCEEEEecCcHHHHHHHHHHHHcC-----C----CEEEEEEEC
Confidence 689999999999999888776532 3 888898864
No 109
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=69.25 E-value=9.2 Score=27.02 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=32.2
Q ss_pred HHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 114 MTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 114 I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
+++.+++++.|++|+.+....... ..-+..++.....|.+|+.+
T Consensus 56 ~~~~~~~~~pDfvI~isPN~a~PG----P~~ARE~l~~~~iP~IvI~D 99 (283)
T 1qv9_A 56 ALDIAEDFEPDFIVYGGPNPAAPG----PSKAREMLADSEYPAVIIGD 99 (283)
T ss_dssp HHHHHHHHCCSEEEEECSCTTSHH----HHHHHHHHHTSSSCEEEEEE
T ss_pred hhhhhhhcCCCEEEEECCCCCCCC----chHHHHHHHhCCCCEEEEcC
Confidence 344568999999999877543222 23577888899999999864
No 110
>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}
Probab=68.41 E-value=24 Score=23.75 Aligned_cols=37 Identities=11% Similarity=-0.080 Sum_probs=27.8
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecC
Q 044140 5 TKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPN 50 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~ 50 (166)
.+++++|++.+..+|..++..+.+ .+. ++.++|+...
T Consensus 5 ~~~kv~v~~SGG~DS~~ll~ll~~-----~g~----~v~~~~v~~~ 41 (203)
T 3k32_A 5 KLMDVHVLFSGGKDSSLSAVILKK-----LGY----NPHLITINFG 41 (203)
T ss_dssp -CEEEEEECCCSHHHHHHHHHHHH-----TTE----EEEEEEEECS
T ss_pred cCCeEEEEEECcHHHHHHHHHHHH-----cCC----CeEEEEEeCC
Confidence 347899999999999888865532 345 8999998653
No 111
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=67.96 E-value=25 Score=23.74 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=37.2
Q ss_pred HHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcC---CccEEEE
Q 044140 92 ICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHC---SCTVMIV 159 (166)
Q Consensus 92 ~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~---~~pVlvv 159 (166)
.++..|.+ +.. +-..-+.+.+++.+++.++|+|.+......... .+..+.+.+=+.. .+||++-
T Consensus 111 ~l~~~G~~-v~~-LG~~vp~~~l~~~~~~~~~d~v~lS~~~~~~~~--~~~~~i~~l~~~~~~~~~~v~vG 177 (210)
T 1y80_A 111 MLESGGFT-VYN-LGVDIEPGKFVEAVKKYQPDIVGMSALLTTTMM--NMKSTIDALIAAGLRDRVKVIVG 177 (210)
T ss_dssp HHHHTTCE-EEE-CCSSBCHHHHHHHHHHHCCSEEEEECCSGGGTH--HHHHHHHHHHHTTCGGGCEEEEE
T ss_pred HHHHCCCE-EEE-CCCCCCHHHHHHHHHHcCCCEEEEeccccccHH--HHHHHHHHHHhcCCCCCCeEEEE
Confidence 34445655 221 122467899999999999999999865333222 1233334333332 2777764
No 112
>1qzu_A Hypothetical protein MDS018; alpha-beta sandwich, lyase; HET: FMN; 2.91A {Homo sapiens} SCOP: c.34.1.1
Probab=67.96 E-value=6.5 Score=26.98 Aligned_cols=39 Identities=8% Similarity=-0.015 Sum_probs=29.0
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEe
Q 044140 4 QTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHA 47 (166)
Q Consensus 4 ~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v 47 (166)
...++|++++.++-.+.++.+.+-.+.+ ..+. +++++-.
T Consensus 17 l~~k~IllgvTGsiaa~k~~~lv~~L~~-~~g~----~V~vv~T 55 (206)
T 1qzu_A 17 ERKFHVLVGVTGSVAALKLPLLVSKLLD-IPGL----EVAVVTT 55 (206)
T ss_dssp CSSEEEEEEECSSGGGGTHHHHHHHHC----CE----EEEEEEC
T ss_pred cCCCEEEEEEeChHHHHHHHHHHHHHhc-ccCC----EEEEEEC
Confidence 3458999999999999999888877755 3566 7877743
No 113
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=67.87 E-value=16 Score=22.06 Aligned_cols=62 Identities=11% Similarity=0.209 Sum_probs=31.9
Q ss_pred HHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 88 KATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
++.+.+.+.|++ +++....-. .+..... ++|+|+.+..-.....+ .+......++||+++++
T Consensus 23 kl~~~~~~~gi~-~~i~~~~~~---~~~~~~~--~~D~Ii~t~~l~~~~~~------~~~~~~~~~~pv~~I~~ 84 (109)
T 2l2q_A 23 RIEKYAKSKNIN-ATIEAIAET---RLSEVVD--RFDVVLLAPQSRFNKKR------LEEITKPKGIPIEIINT 84 (109)
T ss_dssp HHHHHHHHHTCS-EEEEEECST---THHHHTT--TCSEEEECSCCSSHHHH------HHHHHHHHTCCEEECCH
T ss_pred HHHHHHHHCCCC-eEEEEecHH---HHHhhcC--CCCEEEECCccHHHHHH------HHHHhcccCCCEEEECh
Confidence 444455566877 665443322 2222333 89999998653322211 12222334678877753
No 114
>1meo_A Phosophoribosylglycinamide formyltransferase; purine biosynthesis; 1.72A {Homo sapiens} SCOP: c.65.1.1 PDB: 1njs_A* 1rbm_A* 1rbq_A* 1rby_A* 1rbz_A* 1rc0_A* 1rc1_A* 1zly_A* 1zlx_A* 1mej_B 1men_A*
Probab=67.77 E-value=26 Score=23.93 Aligned_cols=84 Identities=12% Similarity=0.084 Sum_probs=50.9
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHH
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVA 86 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (166)
+||.|-+.++..+..++-.+.+- . ..+. ++.+|-..++. . .
T Consensus 1 ~riaVl~SG~Gs~L~aLi~~~~~-~-~~~~----~I~~Vvs~~~~--~---------------------~---------- 41 (209)
T 1meo_A 1 ARVAVLISGTGSNLQALIDSTRE-P-NSSA----QIDIVISNKAA--V---------------------A---------- 41 (209)
T ss_dssp CEEEEEESSSCTTHHHHHHHHHS-T-TCSC----EEEEEEESSTT--C---------------------H----------
T ss_pred CeEEEEEECCchHHHHHHHHHhc-C-CCCc----EEEEEEeCCCC--h---------------------H----------
Confidence 47899999988887777655432 2 2344 66665443211 1 0
Q ss_pred HHHHHHHHhCCCCcccEEeec--CCc---hhHHHHHHhhhCCcEEEEcccC
Q 044140 87 DKATSICAKREVNDMPVHVMQ--GDP---RNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~v~~--g~~---~~~I~~~a~~~~~dliV~g~~~ 132 (166)
..+.+.+.|++ +...-.. .+. ...+.+..++.++|+||+...+
T Consensus 42 --~~~~A~~~gIp-~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~a~y~ 89 (209)
T 1meo_A 42 --GLDKAERAGIP-TRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFM 89 (209)
T ss_dssp --HHHHHHHTTCC-EEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred --HHHHHHHcCCC-EEEECccccCchhhhhHHHHHHHHhcCCCEEEEcchh
Confidence 02456777888 5321111 111 2568888999999999998653
No 115
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=67.31 E-value=20 Score=22.26 Aligned_cols=50 Identities=6% Similarity=-0.035 Sum_probs=28.3
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh-cCCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH-HCSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~~ 162 (166)
......++..++..+|+|++...-.+. ..+ .....+-. ...+||+++-..
T Consensus 45 ~~~~~a~~~l~~~~~dlvi~D~~l~~~-~g~---~~~~~l~~~~~~~~ii~~s~~ 95 (153)
T 3hv2_A 45 RDATQALQLLASREVDLVISAAHLPQM-DGP---TLLARIHQQYPSTTRILLTGD 95 (153)
T ss_dssp SSHHHHHHHHHHSCCSEEEEESCCSSS-CHH---HHHHHHHHHCTTSEEEEECCC
T ss_pred CCHHHHHHHHHcCCCCEEEEeCCCCcC-cHH---HHHHHHHhHCCCCeEEEEECC
Confidence 344555566677899999998653221 111 12223322 346899888654
No 116
>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}
Probab=67.20 E-value=34 Score=24.95 Aligned_cols=62 Identities=3% Similarity=-0.116 Sum_probs=37.3
Q ss_pred CCCcccEEeecCCchhH--HHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 97 EVNDMPVHVMQGDPRNV--MTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 97 ~i~~~~~~v~~g~~~~~--I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.++ +-..+-. +..+. +.+.|++.++|-+++....+.....--+=..-..|...++.||++.-
T Consensus 81 rvp-ViaGvg~-st~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (314)
T 3d0c_A 81 RAT-VVAGIGY-SVDTAIELGKSAIDSGADCVMIHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF 144 (314)
T ss_dssp SSE-EEEEECS-SHHHHHHHHHHHHHTTCSEEEECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE
T ss_pred CCe-EEecCCc-CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 344 4344433 44444 46778899999999987655433221111223457778899999874
No 117
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=66.94 E-value=26 Score=23.57 Aligned_cols=43 Identities=5% Similarity=-0.106 Sum_probs=24.6
Q ss_pred CCCCCCCEEEEEEcCC---hhHHHHHHHHHHhcCCCCCCCCceEEE-EEEeec
Q 044140 1 MGDQTKPIMMVAIDDS---NHSYYALEWALDYFFPPFAPNHTFQLV-LIHARP 49 (166)
Q Consensus 1 m~~~~~~~Ilv~vd~s---~~s~~al~~a~~la~~~~~~~~~~~l~-lv~v~~ 49 (166)
|+.|...+||+..... ..+..+++++.+.+. . +. ++. ++.+.+
T Consensus 1 m~~M~~mkIl~I~GS~r~~s~t~~la~~~~~~~~-~-g~----~v~~~idL~~ 47 (199)
T 4hs4_A 1 MTTTSPLHFVTLLGSLRKASFNAAVARALPEIAP-E-GI----AITPLGSIGT 47 (199)
T ss_dssp ----CCEEEEEEECCCSTTCHHHHHHHHHHHHCC-T-TE----EEEECCCGGG
T ss_pred CCCCCCCEEEEEEcCCCCCChHHHHHHHHHHHcc-C-CC----EEEEEEehhh
Confidence 6666556777655431 346778888888776 4 44 777 555543
No 118
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=66.90 E-value=38 Score=25.46 Aligned_cols=36 Identities=11% Similarity=-0.015 Sum_probs=27.1
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeec
Q 044140 5 TKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARP 49 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~ 49 (166)
..++|+|++.+..+|..++..+.+ .+. +|+.+|+..
T Consensus 16 ~~~kVvVa~SGGvDSsv~a~lL~~-----~G~----~V~~v~~~~ 51 (380)
T 2der_A 16 TAKKVIVGMSGGVDSSVSAWLLQQ-----QGY----QVEGLFMKN 51 (380)
T ss_dssp -CCEEEEECCSCSTTHHHHHHHHT-----TCC----EEEEEEEEC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHH-----cCC----eEEEEEEEc
Confidence 357899999999988877665532 345 899999864
No 119
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=66.80 E-value=33 Score=24.73 Aligned_cols=84 Identities=8% Similarity=0.146 Sum_probs=53.1
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 044140 5 TKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQK 84 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (166)
..+||+|-+.++..+..++-.+.+- . ..++ ++.+|-...+.
T Consensus 89 ~~~ri~vl~Sg~g~~l~~ll~~~~~-g-~l~~----~i~~Visn~~~--------------------------------- 129 (286)
T 3n0v_A 89 HRPKVVIMVSKADHCLNDLLYRQRI-G-QLGM----DVVAVVSNHPD--------------------------------- 129 (286)
T ss_dssp CCCEEEEEESSCCHHHHHHHHHHHT-T-SSCC----EEEEEEESSST---------------------------------
T ss_pred CCcEEEEEEeCCCCCHHHHHHHHHC-C-CCCc----EEEEEEeCcHH---------------------------------
Confidence 3578999999988888877776554 2 3445 76665442210
Q ss_pred HHHHHHHHHHhCCCCcccEE-eecCCc---hhHHHHHHhhhCCcEEEEcccC
Q 044140 85 VADKATSICAKREVNDMPVH-VMQGDP---RNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~-v~~g~~---~~~I~~~a~~~~~dliV~g~~~ 132 (166)
+...+++.|++ +... ....+. ...+.+..++.++|+||+....
T Consensus 130 ----~~~~A~~~gIp-~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 176 (286)
T 3n0v_A 130 ----LEPLAHWHKIP-YYHFALDPKDKPGQERKVLQVIEETGAELVILARYM 176 (286)
T ss_dssp ----THHHHHHTTCC-EEECCCBTTBHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ----HHHHHHHcCCC-EEEeCCCcCCHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 11235667888 5432 111111 3468899999999999998664
No 120
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=66.76 E-value=18 Score=22.34 Aligned_cols=61 Identities=2% Similarity=-0.136 Sum_probs=34.7
Q ss_pred HHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 93 CAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 93 ~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
+.+.|.. + +.....+.+-++.+++..+|+|++--.=. ... |-..-+.+++..+||+++-..
T Consensus 28 L~~~G~~-v---~~~a~~g~eAl~~~~~~~~DlvllDi~mP-~~~----G~el~~~lr~~~ipvI~lTa~ 88 (123)
T 2lpm_A 28 LCELGHE-V---AATASRMQEALDIARKGQFDIAIIDVNLD-GEP----SYPVADILAERNVPFIFATGY 88 (123)
T ss_dssp HHHHCCC-C---CBCSCCHHHHHHHHHHCCSSEEEECSSSS-SCC----SHHHHHHHHHTCCSSCCBCTT
T ss_pred HHHCCCE-E---EEEECCHHHHHHHHHhCCCCEEEEecCCC-CCC----HHHHHHHHHcCCCCEEEEecC
Confidence 3445666 2 11233445555677888999999975421 111 222233455667999888653
No 121
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A
Probab=66.66 E-value=33 Score=24.65 Aligned_cols=48 Identities=10% Similarity=-0.022 Sum_probs=31.1
Q ss_pred HHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 114 MTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 114 I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
+.+.+++.++|-+++....+.....--+=..-..|...++.||++...
T Consensus 88 la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~ 135 (292)
T 2ojp_A 88 LTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNV 135 (292)
T ss_dssp HHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEECC
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 457788889999988776554332211112335677888999998753
No 122
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP, A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus} PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A* 1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A* 1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A* ...
Probab=66.52 E-value=24 Score=25.26 Aligned_cols=61 Identities=5% Similarity=-0.021 Sum_probs=35.4
Q ss_pred HHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 88 KATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+.+.+.|++ +-+.+..-...+.+ .+ .+|++=+|+..-.... ...++ ..+.+||++=..
T Consensus 66 ~l~~~~~e~Glp-~~te~~d~~~~~~l----~~-~vd~~~IgA~~~rn~~------ll~~~-a~~~~PV~lK~G 126 (267)
T 2nwr_A 66 ALRKVKEEFGLK-ITTDIHESWQAEPV----AE-VADIIQIPAFLCRQTD------LLLAA-AKTGRAVNVKKG 126 (267)
T ss_dssp HHHHHHHHHCCE-EEEECSSGGGHHHH----HT-TCSEEEECGGGTTCHH------HHHHH-HTTTSEEEEECC
T ss_pred HHHHHHHhcCCe-EEEecCCHHhHHHH----Hh-cCCEEEECcccccCHH------HHHHH-HcCCCcEEEeCC
Confidence 344555777998 66655443333333 23 5899999986433222 23333 366888877554
No 123
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=66.49 E-value=18 Score=21.48 Aligned_cols=51 Identities=4% Similarity=-0.157 Sum_probs=29.9
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh---cCCccEEEEcCCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH---HCSCTVMIVKMPK 163 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~~~~ 163 (166)
......++..++..+|+|++...-.+ ...+ ...+++-. ...+||+++-...
T Consensus 34 ~~~~~a~~~l~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~~~ 87 (127)
T 3i42_A 34 MSGTDALHAMSTRGYDAVFIDLNLPD-TSGL---ALVKQLRALPMEKTSKFVAVSGFA 87 (127)
T ss_dssp SSHHHHHHHHHHSCCSEEEEESBCSS-SBHH---HHHHHHHHSCCSSCCEEEEEECC-
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhhccCCCCEEEEECCc
Confidence 34556666777789999999865322 1111 12334433 3468999886543
No 124
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=66.41 E-value=34 Score=24.75 Aligned_cols=84 Identities=10% Similarity=0.119 Sum_probs=53.7
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 044140 5 TKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQK 84 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (166)
..+||+|-+.++..+..++-.+.+--. .++ ++.+|-...+.
T Consensus 94 ~~~ri~vl~Sg~g~~l~~ll~~~~~g~--l~~----~i~~Visn~~~--------------------------------- 134 (292)
T 3lou_A 94 ARPKVLIMVSKLEHCLADLLFRWKMGE--LKM----DIVGIVSNHPD--------------------------------- 134 (292)
T ss_dssp SCCEEEEEECSCCHHHHHHHHHHHHTS--SCC----EEEEEEESSST---------------------------------
T ss_pred CCCEEEEEEcCCCcCHHHHHHHHHcCC--CCc----EEEEEEeCcHH---------------------------------
Confidence 357899999999888888777765533 445 76665432210
Q ss_pred HHHHHHHHHHhCCCCcccEEee-cCCc---hhHHHHHHhhhCCcEEEEcccC
Q 044140 85 VADKATSICAKREVNDMPVHVM-QGDP---RNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~-~g~~---~~~I~~~a~~~~~dliV~g~~~ 132 (166)
+...+++.|++ +...-. ..+. ...+.+..++.++|+||+....
T Consensus 135 ----~~~~A~~~gIp-~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivla~y~ 181 (292)
T 3lou_A 135 ----FAPLAAQHGLP-FRHFPITADTKAQQEAQWLDVFETSGAELVILARYM 181 (292)
T ss_dssp ----THHHHHHTTCC-EEECCCCSSCHHHHHHHHHHHHHHHTCSEEEESSCC
T ss_pred ----HHHHHHHcCCC-EEEeCCCcCCHHHHHHHHHHHHHHhCCCEEEecCch
Confidence 01235667888 543111 1121 2468899999999999998664
No 125
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=66.23 E-value=18 Score=21.38 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=28.7
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.....++..++..+|+|++...-.+ ...+ .....+-...++|++++-.
T Consensus 34 ~~~~al~~~~~~~~dlii~D~~~p~-~~g~---~~~~~lr~~~~~~ii~~t~ 81 (120)
T 3f6p_A 34 DGNEAVEMVEELQPDLILLDIMLPN-KDGV---EVCREVRKKYDMPIIMLTA 81 (120)
T ss_dssp SHHHHHHHHHTTCCSEEEEETTSTT-THHH---HHHHHHHTTCCSCEEEEEE
T ss_pred CHHHHHHHHhhCCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCEEEEEC
Confidence 3445566777789999999865322 1111 2234444455789888754
No 126
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*
Probab=65.57 E-value=39 Score=25.03 Aligned_cols=48 Identities=17% Similarity=0.098 Sum_probs=31.4
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.+.+.|++.++|-+++....+.....--+=..-..|...++.||++.-
T Consensus 117 ~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn 164 (343)
T 2v9d_A 117 ELSQHAQQAGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYN 164 (343)
T ss_dssp HHHHHHHHHTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 346778899999998887655432221111223467778899999874
No 127
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}
Probab=65.00 E-value=36 Score=24.48 Aligned_cols=47 Identities=11% Similarity=0.025 Sum_probs=30.8
Q ss_pred HHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 114 MTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 114 I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
+.+.|++.++|-+++....+.....--+=..-..|...++.||++..
T Consensus 87 la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 133 (294)
T 2ehh_A 87 LTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYN 133 (294)
T ss_dssp HHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 46778899999998887654432221111223457778899999875
No 128
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=64.88 E-value=20 Score=21.39 Aligned_cols=50 Identities=8% Similarity=0.084 Sum_probs=27.5
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCCC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMPK 163 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~~ 163 (166)
......+..++..+|+|++...-.+. ..+ .....+-.. ..+|++++-...
T Consensus 39 ~~~~a~~~l~~~~~dlvi~d~~l~~~-~g~---~~~~~l~~~~~~~~ii~~t~~~ 89 (130)
T 3eod_A 39 DGVDALELLGGFTPDLMICDIAMPRM-NGL---KLLEHIRNRGDQTPVLVISATE 89 (130)
T ss_dssp CHHHHHHHHTTCCCSEEEECCC------CH---HHHHHHHHTTCCCCEEEEECCC
T ss_pred CHHHHHHHHhcCCCCEEEEecCCCCC-CHH---HHHHHHHhcCCCCCEEEEEcCC
Confidence 44555666777889999998652221 110 122333333 358998886543
No 129
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*
Probab=64.82 E-value=37 Score=24.54 Aligned_cols=50 Identities=8% Similarity=-0.010 Sum_probs=32.7
Q ss_pred hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 112 NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
-++.+.+++.++|-+++....+.....--+=..-..|...++.||++...
T Consensus 93 i~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 142 (301)
T 3m5v_A 93 VGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNV 142 (301)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 34457788999999999876554332211112345677788999998753
No 130
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=64.63 E-value=22 Score=21.99 Aligned_cols=49 Identities=6% Similarity=-0.060 Sum_probs=28.1
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKM 161 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~ 161 (166)
.......+..++..+|+|++...-.+. ... .....+-.. ..+||+++-.
T Consensus 34 ~~~~~a~~~l~~~~~dliild~~l~~~-~g~---~~~~~l~~~~~~~pii~ls~ 83 (155)
T 1qkk_A 34 ASATEALAGLSADFAGIVISDIRMPGM-DGL---ALFRKILALDPDLPMILVTG 83 (155)
T ss_dssp SCHHHHHHTCCTTCCSEEEEESCCSSS-CHH---HHHHHHHHHCTTSCEEEEEC
T ss_pred CCHHHHHHHHHhCCCCEEEEeCCCCCC-CHH---HHHHHHHhhCCCCCEEEEEC
Confidence 344556667777889999998653221 111 122333332 4688888854
No 131
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=64.40 E-value=34 Score=24.05 Aligned_cols=66 Identities=14% Similarity=0.061 Sum_probs=39.8
Q ss_pred HHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEE
Q 044140 90 TSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIV 159 (166)
Q Consensus 90 ~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv 159 (166)
...+...|.+ +... -..-+.+.+++.++++++|+|.+......... .+..+.+.+-.. .++||++-
T Consensus 144 a~~L~~~G~~-Vi~L-G~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~--~~~~~i~~l~~~~~~~~v~vG 210 (258)
T 2i2x_B 144 TALLRANGYN-VVDL-GRDVPAEEVLAAVQKEKPIMLTGTALMTTTMY--AFKEVNDMLLENGIKIPFACG 210 (258)
T ss_dssp HHHHHHTTCE-EEEE-EEECCSHHHHHHHHHHCCSEEEEECCCTTTTT--HHHHHHHHHHTTTCCCCEEEE
T ss_pred HHHHHHCCCE-EEEC-CCCCCHHHHHHHHHHcCCCEEEEEeeccCCHH--HHHHHHHHHHhcCCCCcEEEE
Confidence 3345666777 3322 22478999999999999999999865333222 122333433222 34787764
No 132
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}
Probab=63.92 E-value=38 Score=24.42 Aligned_cols=48 Identities=4% Similarity=-0.016 Sum_probs=31.4
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.+.+.|++.++|-+++....+.....--+=..-..|...++.||++.-
T Consensus 86 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 133 (297)
T 2rfg_A 86 RYAQHAQQAGADAVLCVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYN 133 (297)
T ss_dssp HHHHHHHHHTCSEEEECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 346778899999999987655433221111223457778899999874
No 133
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=63.91 E-value=38 Score=24.34 Aligned_cols=63 Identities=5% Similarity=-0.016 Sum_probs=36.8
Q ss_pred CCCcccEEeecCCchhH--HHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 97 EVNDMPVHVMQGDPRNV--MTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 97 ~i~~~~~~v~~g~~~~~--I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.++ +-..+-..+..+. +.+.|++.++|-+++....+.....--+=..-..|...++.||++..
T Consensus 69 r~p-viaGvg~~~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 133 (292)
T 2vc6_A 69 RVP-VIAGAGSNSTAEAIAFVRHAQNAGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYN 133 (292)
T ss_dssp SSC-BEEECCCSSHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CCc-EEEecCCccHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 344 3333333244443 46778899999998887654332221111223467778899999874
No 134
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}
Probab=63.86 E-value=38 Score=24.31 Aligned_cols=48 Identities=8% Similarity=0.009 Sum_probs=31.4
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.+.+.+++.++|-+++....+.....--+=..-..|...++.||++.-
T Consensus 86 ~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 133 (289)
T 2yxg_A 86 ELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESINLPIVLYN 133 (289)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 346778899999998887655433221111223467778899999874
No 135
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}
Probab=63.84 E-value=41 Score=24.74 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=31.4
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.+.+.|++.++|-+++....+.....--+=..-..|...++.||++.-
T Consensus 120 ~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn 167 (332)
T 2r8w_A 120 ALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATALPLAIYN 167 (332)
T ss_dssp HHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEC
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 346778899999999987655433221111223457778899999874
No 136
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=63.80 E-value=24 Score=22.07 Aligned_cols=66 Identities=6% Similarity=-0.013 Sum_probs=35.1
Q ss_pred HHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHh---hcCCccEEEEcCCC
Q 044140 90 TSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSA---HHCSCTVMIVKMPK 163 (166)
Q Consensus 90 ~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~---~~~~~pVlvv~~~~ 163 (166)
...+.+.|.. . +...+.+.+-++..++..+|+|++--.= ....++ .+.+++= ....+||+++-...
T Consensus 29 ~~~L~~~G~~-~---v~~a~~g~~al~~~~~~~~DlillD~~M-P~mdG~---el~~~ir~~~~~~~ipvI~lTa~~ 97 (134)
T 3to5_A 29 KNLLRDLGFN-N---TQEADDGLTALPMLKKGDFDFVVTDWNM-PGMQGI---DLLKNIRADEELKHLPVLMITAEA 97 (134)
T ss_dssp HHHHHHTTCC-C---EEEESSHHHHHHHHHHHCCSEEEEESCC-SSSCHH---HHHHHHHHSTTTTTCCEEEEESSC
T ss_pred HHHHHHcCCc-E---EEEECCHHHHHHHHHhCCCCEEEEcCCC-CCCCHH---HHHHHHHhCCCCCCCeEEEEECCC
Confidence 3344556765 2 2222344455667778899999998542 112211 1222221 22458999986543
No 137
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=63.74 E-value=20 Score=21.04 Aligned_cols=48 Identities=13% Similarity=0.141 Sum_probs=27.5
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc---CCccEEEE
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH---CSCTVMIV 159 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv 159 (166)
.......+..++..+|+|++...-.+..... ...+.+-.. ..+||+++
T Consensus 36 ~~~~~a~~~~~~~~~dlvi~d~~~~~~~~g~---~~~~~l~~~~~~~~~~ii~~ 86 (127)
T 2gkg_A 36 TDGKGSVEQIRRDRPDLVVLAVDLSAGQNGY---LICGKLKKDDDLKNVPIVII 86 (127)
T ss_dssp CCHHHHHHHHHHHCCSEEEEESBCGGGCBHH---HHHHHHHHSTTTTTSCEEEE
T ss_pred cCHHHHHHHHHhcCCCEEEEeCCCCCCCCHH---HHHHHHhcCccccCCCEEEE
Confidence 3345555666777899999986532111111 233444333 46899988
No 138
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*
Probab=63.58 E-value=38 Score=24.32 Aligned_cols=48 Identities=6% Similarity=-0.045 Sum_probs=30.6
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.+.+.+++.++|-+++....+.....--+=..-..|...++.||++.-
T Consensus 90 ~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn 137 (293)
T 1f6k_A 90 ELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGSNMIVYS 137 (293)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 346778889999998887655432221111223456667789999874
No 139
>1sbz_A Probable aromatic acid decarboxylase; FMN binding, PAD1, UBIX, montreal-kingston bacterial structu genomics initiative, BSGI; HET: FMN; 2.00A {Escherichia coli} SCOP: c.34.1.1
Probab=63.55 E-value=15 Score=25.00 Aligned_cols=35 Identities=6% Similarity=-0.066 Sum_probs=29.0
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEE
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIH 46 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~ 46 (166)
+||++++.|+-.+.++.+..-.+.+ ..+. +++++-
T Consensus 1 ~~IllgvTGsiaa~k~~~ll~~L~~-~~g~----~V~vv~ 35 (197)
T 1sbz_A 1 MKLIVGMTGATGAPLGVALLQALRE-MPNV----ETHLVM 35 (197)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHHT-CTTC----EEEEEE
T ss_pred CEEEEEEeChHHHHHHHHHHHHHHh-ccCC----EEEEEE
Confidence 3799999999999999999988876 4366 888774
No 140
>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}
Probab=63.52 E-value=12 Score=27.49 Aligned_cols=68 Identities=9% Similarity=0.061 Sum_probs=41.6
Q ss_pred HHHHhCCCCcccEEeecC-CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEE
Q 044140 91 SICAKREVNDMPVHVMQG-DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 91 ~~~~~~~i~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 159 (166)
+.+++.+.. +-.--..+ +..+++++.|++.+..+|+-.+.+........+......+..+.++||.+-
T Consensus 20 ~~A~~~~yA-V~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~~~~~~~~~~A~~~~VPVaLH 88 (306)
T 3pm6_A 20 TFARTHSFA-IPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYADSLLVRTAASACRAASVPITLH 88 (306)
T ss_dssp HHHHHTTCC-EEEEECSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHTTHHHHHHHHHHHHCSSCEEEE
T ss_pred HHHHHCCcE-EEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccHHHHHHHHHHHHHCCCCEEEE
Confidence 334445555 33322333 778999999999999999976653221111112234455677889999764
No 141
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=63.00 E-value=6.3 Score=28.65 Aligned_cols=107 Identities=8% Similarity=-0.042 Sum_probs=58.1
Q ss_pred CEEEEEEcCChh---HHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHH
Q 044140 7 PIMMVAIDDSNH---SYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQ 83 (166)
Q Consensus 7 ~~Ilv~vd~s~~---s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (166)
+--|+.+.+.++ ....+++.++++. ..+. .|.+|-. ... . .+
T Consensus 26 ~g~l~iiGGgedk~~~~~i~~~~v~lag-g~~~----~I~~Ipt---As~-------------~---~~----------- 70 (291)
T 3en0_A 26 QPAILIIGGAEDKVHGREILQTFWSRSG-GNDA----IIGIIPS---ASR-------------E---PL----------- 70 (291)
T ss_dssp SCCEEEECSSCCSSSCCHHHHHHHHHTT-GGGC----EEEEECT---TCS-------------S---HH-----------
T ss_pred CceEEEEECCCCccChHHHHHHHHHHcC-CCCC----eEEEEeC---CCC-------------C---hH-----------
Confidence 445667777653 4578999999998 5444 6666511 110 0 00
Q ss_pred HHHHHHHHHHHhCCCCcccEEeec---CCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh
Q 044140 84 KVADKATSICAKREVNDMPVHVMQ---GDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH 150 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~---g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~ 150 (166)
...+.+.+.+.+.|+..++..-+. .-....+.+..+ ++|.|.++......+.+.+.++-...+++
T Consensus 71 ~~~~~~~~~f~~lG~~~v~~L~i~~r~~a~~~~~~~~l~--~ad~I~v~GGnt~~l~~~l~~t~l~~~L~ 138 (291)
T 3en0_A 71 LIGERYQTIFSDMGVKELKVLDIRDRAQGDDSGYRLFVE--QCTGIFMTGGDQLRLCGLLADTPLMDRIR 138 (291)
T ss_dssp HHHHHHHHHHHHHCCSEEEECCCCSGGGGGCHHHHHHHH--HCSEEEECCSCHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCeeEEEEecCccccCCHHHHHHHh--cCCEEEECCCCHHHHHHHHHhCCHHHHHH
Confidence 112233344555577424433221 123346677777 89999998654444455555554444444
No 142
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=62.88 E-value=40 Score=24.34 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=31.4
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.+.+.|++.++|-+++....+.....--+=..-..|...++.||++.-
T Consensus 98 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 145 (301)
T 1xky_A 98 DLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYN 145 (301)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEE
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 346778899999998887654432221111223567778899999874
No 143
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*
Probab=62.81 E-value=35 Score=24.49 Aligned_cols=48 Identities=15% Similarity=0.076 Sum_probs=29.4
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.+.+.+++.++|-+++....+.....--+=..-..|...++.||++.-
T Consensus 87 ~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn 134 (291)
T 3a5f_A 87 AMSKWAESIGVDGLLVITPYYNKTTQKGLVKHFKAVSDAVSTPIIIYN 134 (291)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHC-CTGGGCCSCEEEEE
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 346778899999998887654332211111112345667789999875
No 144
>1p3y_1 MRSD protein; flavoprotein, FMN, rossmann fold, HFCD family, oxdidative decarboxylation, cystein, lantibiotics, mersacidin, oxidore; HET: FAD; 2.54A {Bacillus SP} SCOP: c.34.1.1
Probab=62.74 E-value=9.4 Score=25.91 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=29.2
Q ss_pred CCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEE
Q 044140 6 KPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIH 46 (166)
Q Consensus 6 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~ 46 (166)
.++|++++.|+..+.++.+..-.+.+ .+. +++++-
T Consensus 8 ~k~IllgvTGs~aa~k~~~l~~~L~~--~g~----~V~vv~ 42 (194)
T 1p3y_1 8 DKKLLIGICGSISSVGISSYLLYFKS--FFK----EIRVVM 42 (194)
T ss_dssp GCEEEEEECSCGGGGGTHHHHHHHTT--TSS----EEEEEE
T ss_pred CCEEEEEEECHHHHHHHHHHHHHHHH--CCC----EEEEEE
Confidence 48999999999999999998888855 466 888774
No 145
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=62.72 E-value=23 Score=21.41 Aligned_cols=49 Identities=10% Similarity=0.003 Sum_probs=28.4
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh---cCCccEEEEcC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH---HCSCTVMIVKM 161 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~~ 161 (166)
......++..++..+|+|++...-.+ ...+ ...+++-. ...+|++++-.
T Consensus 37 ~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~ 88 (140)
T 3grc_A 37 HSAAQALEQVARRPYAAMTVDLNLPD-QDGV---SLIRALRRDSRTRDLAIVVVSA 88 (140)
T ss_dssp CSHHHHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHTSGGGTTCEEEEECT
T ss_pred CCHHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCcccCCCCEEEEec
Confidence 34455666777789999999865322 1111 12333332 34688888854
No 146
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A
Probab=62.63 E-value=41 Score=24.36 Aligned_cols=48 Identities=8% Similarity=0.127 Sum_probs=31.7
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.+.+.|++.++|-+++....+.....--+=..-..|...++.||++.-
T Consensus 98 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 145 (306)
T 1o5k_A 98 KLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYN 145 (306)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEE
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 346778899999998887655433221111233567778899999874
No 147
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=62.30 E-value=7 Score=23.19 Aligned_cols=44 Identities=14% Similarity=0.240 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecC-CchhHHHHHHhhhCCcEEEE
Q 044140 84 KVADKATSICAKREVNDMPVHVMQG-DPRNVMTEAVERFHPTILVL 128 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~ 128 (166)
++.+.+.++.++++.. +-+.+... ..++.-+++.+..++..+++
T Consensus 37 elkdsieelvkkynat-ivvvvvddkewaekairfvkslgaqvlii 81 (134)
T 2l69_A 37 ELKDSIEELVKKYNAT-IVVVVVDDKEWAEKAIRFVKSLGAQVLII 81 (134)
T ss_dssp HHHHHHHHHTTCCCCE-EEEEECSSHHHHHHHHHHHHHHCCCCEEE
T ss_pred HHHHHHHHHHHHhCCe-EEEEEEccHHHHHHHHHHHHhcCCeEEEE
Confidence 3334444444444444 33333333 33444555555555555444
No 148
>3auf_A Glycinamide ribonucleotide transformylase 1; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; 2.07A {Symbiobacterium toebii}
Probab=61.95 E-value=37 Score=23.58 Aligned_cols=42 Identities=7% Similarity=0.051 Sum_probs=27.0
Q ss_pred HHHHHhCCCCcccEEeecC-Cc----hhHHHHHHhhhCCcEEEEcccC
Q 044140 90 TSICAKREVNDMPVHVMQG-DP----RNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 90 ~~~~~~~~i~~~~~~v~~g-~~----~~~I~~~a~~~~~dliV~g~~~ 132 (166)
.+.+.+.|++ +...-... .. ..++.+..++.++|+||+...+
T Consensus 65 ~~~A~~~gIp-~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~ 111 (229)
T 3auf_A 65 LERARRAGVD-ALHMDPAAYPSRTAFDAALAERLQAYGVDLVCLAGYM 111 (229)
T ss_dssp HHHHHHTTCE-EEECCGGGSSSHHHHHHHHHHHHHHTTCSEEEESSCC
T ss_pred HHHHHHcCCC-EEEECcccccchhhccHHHHHHHHhcCCCEEEEcChh
Confidence 3456677888 43211111 11 3578888999999999998653
No 149
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A
Probab=61.92 E-value=42 Score=24.30 Aligned_cols=48 Identities=4% Similarity=-0.051 Sum_probs=30.5
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCC-ccEEEEc
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCS-CTVMIVK 160 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv~ 160 (166)
.+.+.+++.++|-+++....+.....--+=..-..|...++ .||++.-
T Consensus 97 ~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiilYn 145 (303)
T 2wkj_A 97 QLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYN 145 (303)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEEEe
Confidence 34677889999999888765443222111122345666778 9999874
No 150
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=61.72 E-value=53 Score=25.33 Aligned_cols=86 Identities=7% Similarity=0.017 Sum_probs=46.1
Q ss_pred EEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHH
Q 044140 12 AIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKATS 91 (166)
Q Consensus 12 ~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 91 (166)
...++-.+..+...|..+++ . +. .+.++..... . + ...+++..
T Consensus 107 G~~G~GKTTt~~kLA~~l~~-~-G~----kVllv~~D~~---R-------------~---------------aa~eqL~~ 149 (443)
T 3dm5_A 107 GIQGSGKTTTVAKLARYFQK-R-GY----KVGVVCSDTW---R-------------P---------------GAYHQLRQ 149 (443)
T ss_dssp CCTTSSHHHHHHHHHHHHHT-T-TC----CEEEEECCCS---S-------------T---------------HHHHHHHH
T ss_pred CcCCCCHHHHHHHHHHHHHH-C-CC----eEEEEeCCCc---c-------------h---------------hHHHHHHH
Confidence 33445567777788877777 4 44 6666644211 0 0 01123333
Q ss_pred HHHhCCCCcccEEeecCCch---hHHHHHHhhhCCcEEEEcccCCcc
Q 044140 92 ICAKREVNDMPVHVMQGDPR---NVMTEAVERFHPTILVLGSHGYGA 135 (166)
Q Consensus 92 ~~~~~~i~~~~~~v~~g~~~---~~I~~~a~~~~~dliV~g~~~~~~ 135 (166)
+....|++ +...-...++. ...++.++..++|+|++-+.++..
T Consensus 150 ~~~~~gvp-v~~~~~~~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~ 195 (443)
T 3dm5_A 150 LLDRYHIE-VFGNPQEKDAIKLAKEGVDYFKSKGVDIIIVDTAGRHK 195 (443)
T ss_dssp HHGGGTCE-EECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCCSS
T ss_pred HHHhcCCc-EEecCCCCCHHHHHHHHHHHHHhCCCCEEEEECCCccc
Confidence 44445666 33221223443 334556666789999998776544
No 151
>2x5e_A UPF0271 protein PA4511; unknown function; HET: CIT; 2.30A {Pseudomonas aeruginosa} PDB: 2xu2_A*
Probab=61.36 E-value=21 Score=25.33 Aligned_cols=122 Identities=8% Similarity=0.003 Sum_probs=72.2
Q ss_pred EEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Q 044140 11 VAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKAT 90 (166)
Q Consensus 11 v~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 90 (166)
|+..+.......++..+++|+ ..+. -+--|.-.+....+.-..... + .+++.......+-.+.
T Consensus 39 IACGfHAGDp~~M~~Tv~lA~-~~gV-----~IGAHPgypDl~GFGRR~m~~----s-------~~el~~~v~YQiGAL~ 101 (252)
T 2x5e_A 39 LACGFHAGDPLTMRRAVELAV-RHGV-----SIGAHPAYPDLSGFGRRSLAC----S-------AEEVHAMVLYQIGALD 101 (252)
T ss_dssp EECSSSSCCHHHHHHHHHHHH-HTTC-----EEEEECCCSCTTTTTCSCCCC----C-------HHHHHHHHHHHHHHHH
T ss_pred hhccccCCCHHHHHHHHHHHH-HcCC-----eeecCCCCCcccCCCCCCCCC----C-------HHHHHHHHHHHHHHHH
Confidence 344455556677888899999 7664 345565544444433322111 1 1333444444556667
Q ss_pred HHHHhCCCCcccEEeecC----------CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEE
Q 044140 91 SICAKREVNDMPVHVMQG----------DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVM 157 (166)
Q Consensus 91 ~~~~~~~i~~~~~~v~~g----------~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVl 157 (166)
..++..|.+ +.+.-.+| ..++.|++.+...+.+|+++|..-.. ||...+..+....|++
T Consensus 102 a~a~~~G~~-l~hVKPHGALYN~~~~d~~~A~av~~av~~~d~~L~l~~l~~~~-------gs~~~~~A~~~Gl~~~ 170 (252)
T 2x5e_A 102 AFCRSLGTQ-VAYVKPHGALYNDLVGDDELLRAVLDACAAYRKGLPLMVLALAD-------NGRELELADEADVPLL 170 (252)
T ss_dssp HHHHHTTCC-CCEECCCHHHHHHHTTCHHHHHHHHHHHHHHCTTCCEEEECCSC-------CHHHHHHHHHHTCCEE
T ss_pred HHHHHcCCE-eEEeccCHHHHHHHhhCHHHHHHHHHHHHHhCCCcEEEEeCCCC-------CCHHHHHHHHcCCcEE
Confidence 777888888 66554443 44788999999999999999844110 3334445555555554
No 152
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=60.80 E-value=21 Score=20.44 Aligned_cols=50 Identities=4% Similarity=0.020 Sum_probs=29.3
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc---CCccEEEEcCCC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH---CSCTVMIVKMPK 163 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~~~ 163 (166)
......+..++..+|++++...-.+ .... ...+.+-.. ..+|++++-...
T Consensus 33 ~~~~~~~~l~~~~~dlii~d~~~~~-~~~~---~~~~~l~~~~~~~~~~ii~~~~~~ 85 (119)
T 2j48_A 33 DGSTALDQLDLLQPIVILMAWPPPD-QSCL---LLLQHLREHQADPHPPLVLFLGEP 85 (119)
T ss_dssp CHHHHHHHHHHHCCSEEEEECSTTC-CTHH---HHHHHHHHTCCCSSCCCEEEESSC
T ss_pred CHHHHHHHHHhcCCCEEEEecCCCC-CCHH---HHHHHHHhccccCCCCEEEEeCCC
Confidence 3455566667779999999865322 1111 233444333 468988886543
No 153
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=60.34 E-value=27 Score=21.54 Aligned_cols=49 Identities=6% Similarity=-0.073 Sum_probs=28.1
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh-cCCccEEEEcC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH-HCSCTVMIVKM 161 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~ 161 (166)
..........++..+|+|++...-.+ ...+ .....+-. ...+||+++-.
T Consensus 38 ~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls~ 87 (154)
T 2rjn_A 38 TSPLDALEALKGTSVQLVISDMRMPE-MGGE---VFLEQVAKSYPDIERVVISG 87 (154)
T ss_dssp SCHHHHHHHHTTSCCSEEEEESSCSS-SCHH---HHHHHHHHHCTTSEEEEEEC
T ss_pred CCHHHHHHHHhcCCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCcEEEEec
Confidence 33455666777778999999865322 1111 12333333 24688888754
No 154
>3l52_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, PSI-2, protein structure initiative; 1.35A {Streptomyces avermitilis} PDB: 3v75_A*
Probab=60.31 E-value=35 Score=24.62 Aligned_cols=35 Identities=9% Similarity=0.063 Sum_probs=23.7
Q ss_pred EEEEEEcCChh----------HHHHHHHHHHhcCCCCCCCCceEEEEEEe
Q 044140 8 IMMVAIDDSNH----------SYYALEWALDYFFPPFAPNHTFQLVLIHA 47 (166)
Q Consensus 8 ~Ilv~vd~s~~----------s~~al~~a~~la~~~~~~~~~~~l~lv~v 47 (166)
++.|.+|..+. .....+++..++. ..+. .+..+-+
T Consensus 24 ~LcvglDp~~~~lp~~~l~~~~~~~~~~~~~ivd-~l~~----~v~~~Kv 68 (284)
T 3l52_A 24 PLCVGIDPHASLLADWGLSDDVAGLERFSRTVVE-ALGE----HVAVFKP 68 (284)
T ss_dssp SCEEEECCCHHHHHHTTCCSSHHHHHHHHHHHHH-HHTT----TCSEEEE
T ss_pred CeEEEECCChhhccccccccchHHHHHHHHHHHH-HhCC----cceEEEe
Confidence 57888888865 4455688888888 6654 4555544
No 155
>1of8_A Phospho-2-dehydro-3-deoxyheptonate aldolase, tyrosine-inhibited; beta-alpha-barrel, lyase, synthase, synthetase; HET: PEP G3P; 1.5A {Saccharomyces cerevisiae} SCOP: c.1.10.4 PDB: 1oab_A* 1of6_A* 1hfb_A* 1ofa_A* 1ofb_A 1ofo_A 1ofp_A 1ofq_A 1ofr_A* 1og0_A*
Probab=58.99 E-value=42 Score=25.26 Aligned_cols=126 Identities=13% Similarity=0.107 Sum_probs=65.9
Q ss_pred CEEEEEEcCC--hhHHHHHHHHHHhcCCCC---CCCCceEEE-EEEee-cCCCCCcCCCCCCCCCC-CchhhHHHHHHHH
Q 044140 7 PIMMVAIDDS--NHSYYALEWALDYFFPPF---APNHTFQLV-LIHAR-PNPPSLLGLSGAGQGSA-GSAHVINLVELDT 78 (166)
Q Consensus 7 ~~Ilv~vd~s--~~s~~al~~a~~la~~~~---~~~~~~~l~-lv~v~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 78 (166)
.+++|.+.+. ++-..++++|.+++. .. +. +|. ++.++ +.+.....+.+....+. ......
T Consensus 67 ~rllvIaGPCSIed~e~aleyA~~Lk~-~~~~~~d----~l~iVmR~yfeKPRTs~GwKGli~dP~ld~Sf~g------- 134 (370)
T 1of8_A 67 DRVLVIVGPCSIHDLEAAQEYALRLKK-LSDELKG----DLSIIMRAYLEKPRTTVGWKGLINDPDVNNTFNI------- 134 (370)
T ss_dssp CSEEEEEECSCCCCHHHHHHHHHHHHH-HHHHHTT----TEEEEEECCCCCCCSSSSCCCTTTCTTSSSCCCH-------
T ss_pred CCeEEEEeCCcCCCHHHHHHHHHHHHH-HHHhhcc----CeEEEEEeccccccCCccccccccCCCcCCCcCH-------
Confidence 5678888774 567788888888876 42 21 233 34443 22222221111100000 000111
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEE---EEcccCCccchhhhcccHHHHHhhcCCcc
Q 044140 79 KKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTIL---VLGSHGYGAVKRAVLGSVSDYSAHHCSCT 155 (166)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dli---V~g~~~~~~~~~~~~gs~~~~l~~~~~~p 155 (166)
+..-+.+.++...+.+.|++ +-+++..-...+.+ +|+| -+|++.-.. ..-..+...++||
T Consensus 135 -~~GL~i~r~ll~~v~e~GlP-vaTEvld~~~~qyv--------~Dllsw~aIGARt~es-------q~hre~Asgl~~P 197 (370)
T 1of8_A 135 -NKGLQSARQLFVNLTNIGLP-IGSEMLDTISPQYL--------ADLVSFGAIGARTTES-------QLHRELASGLSFP 197 (370)
T ss_dssp -HHHHHHHHHHHHHHHTTTCC-EEEECCSSSTHHHH--------GGGCSEEEECTTTTTC-------HHHHHHHHTCSSC
T ss_pred -HHHHHHHHHHHHHHHHcCCc-eEEeecCcccHHHH--------HHHHhhccccCccccc-------HHHHHHHhcCCCe
Confidence 33334444555455678999 77777665444333 7888 688775322 1223455678999
Q ss_pred EEEEcC
Q 044140 156 VMIVKM 161 (166)
Q Consensus 156 Vlvv~~ 161 (166)
|.+=..
T Consensus 198 Vg~Kng 203 (370)
T 1of8_A 198 VGFKNG 203 (370)
T ss_dssp EEEECC
T ss_pred EEEcCC
Confidence 987544
No 156
>3c3d_A 2-phospho-L-lactate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FO1; 2.50A {Methanosarcina mazei GO1} PDB: 2ffe_A* 3c3e_A* 3cgw_A
Probab=58.57 E-value=16 Score=26.87 Aligned_cols=48 Identities=15% Similarity=0.159 Sum_probs=33.5
Q ss_pred CchhHHHHHHhhhCCcEEEEcccC-Cccch-hhhcccHHHHHhhcCCccEEEEcC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHG-YGAVK-RAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~-~~~~~-~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+..+.++.++ ++|+||+|-.+ .+.+. .+++..+.+.| +++ |++.|.+
T Consensus 172 ~a~p~vl~AI~--~AD~IvlgPGS~~TSI~P~Llv~gi~~Al-~~s--~kV~v~n 221 (311)
T 3c3d_A 172 SISPKVLEAFE--KEENILIGPSNPITSIGPIISLPGMRELL-KKK--KVVAVSP 221 (311)
T ss_dssp CCCHHHHHHHH--HCCEEEECSSCTTTTSHHHHHSTTHHHHH-HTS--EEEEECC
T ss_pred CCCHHHHHHHH--hCCEEEECCCCCHHHHhhhcCchhHHHHH-HcC--CEEEEcc
Confidence 45668888888 89999999654 44443 45566677764 555 8887765
No 157
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=58.48 E-value=49 Score=23.91 Aligned_cols=49 Identities=12% Similarity=0.030 Sum_probs=31.3
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+.+++.++|-+++....+.....--+=..-..|...++.||++...
T Consensus 102 ~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~ 150 (304)
T 3cpr_A 102 ELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATEVPICLYDI 150 (304)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEEC
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3467788999999988776543322211112234577788999998753
No 158
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=58.45 E-value=28 Score=21.02 Aligned_cols=50 Identities=6% Similarity=0.050 Sum_probs=29.7
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh---cCCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH---HCSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~~~ 162 (166)
.......+..++..+|+|++...-.+ .... .....+-. ...+||+++-..
T Consensus 38 ~~~~~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~~s~~ 90 (142)
T 3cg4_A 38 DSGGQCIDLLKKGFSGVVLLDIMMPG-MDGW---DTIRAILDNSLEQGIAIVMLTAK 90 (142)
T ss_dssp SSHHHHHHHHHTCCCEEEEEESCCSS-SCHH---HHHHHHHHTTCCTTEEEEEEECT
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhcccCCCCEEEEECC
Confidence 44556666777778999999865322 1111 23344433 346899988654
No 159
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=58.32 E-value=27 Score=20.93 Aligned_cols=50 Identities=6% Similarity=0.005 Sum_probs=27.5
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCc----cchhhhcccHHHHHhh-cCCccEEEEcC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYG----AVKRAVLGSVSDYSAH-HCSCTVMIVKM 161 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~----~~~~~~~gs~~~~l~~-~~~~pVlvv~~ 161 (166)
.......+..++..+|+|++...-.+ ....+ .....+-. ...+|++++-.
T Consensus 34 ~~~~~a~~~l~~~~~dlvi~d~~~~~~~~~~~~g~---~~~~~l~~~~~~~~ii~ls~ 88 (140)
T 2qr3_A 34 SSPVSLSTVLREENPEVVLLDMNFTSGINNGNEGL---FWLHEIKRQYRDLPVVLFTA 88 (140)
T ss_dssp CCHHHHHHHHHHSCEEEEEEETTTTC-----CCHH---HHHHHHHHHCTTCCEEEEEE
T ss_pred CCHHHHHHHHHcCCCCEEEEeCCcCCCCCCCccHH---HHHHHHHhhCcCCCEEEEEC
Confidence 34455666777778999999865320 11111 12233333 24688888743
No 160
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=58.15 E-value=28 Score=20.91 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCCCcccEEeec-CCchhHHHHHHhhhCCcEEEEcccCC
Q 044140 86 ADKATSICAKREVNDMPVHVMQ-GDPRNVMTEAVERFHPTILVLGSHGY 133 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~-g~~~~~I~~~a~~~~~dliV~g~~~~ 133 (166)
.+++.+.+++.|++ +++.... ++..+ ... ++|++++|..-.
T Consensus 20 ~~k~~~~~~~~gi~-~~i~a~~~~~~~~----~~~--~~Dvil~~pqv~ 61 (106)
T 1e2b_A 20 VSKMRAQAEKYEVP-VIIEAFPETLAGE----KGQ--NADVVLLGPQIA 61 (106)
T ss_dssp HHHHHHHHHHSCCS-EEEEEECSSSTTH----HHH--HCSEEEECTTSG
T ss_pred HHHHHHHHHHCCCC-eEEEEecHHHHHh----hcc--CCCEEEEccchh
Confidence 34566667778998 7765544 33333 233 689999996633
No 161
>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*
Probab=58.14 E-value=22 Score=26.53 Aligned_cols=74 Identities=9% Similarity=0.026 Sum_probs=45.2
Q ss_pred HHHHHHhCCCCcccEEeecC-CchhHHHHHHhhhCCcEEEEcccCCccc-hh----------hhcccHHHHHhhcCCccE
Q 044140 89 ATSICAKREVNDMPVHVMQG-DPRNVMTEAVERFHPTILVLGSHGYGAV-KR----------AVLGSVSDYSAHHCSCTV 156 (166)
Q Consensus 89 ~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~~~~~~-~~----------~~~gs~~~~l~~~~~~pV 156 (166)
+.+.+++.+.. +-.--..+ +..+++++.|++.+..+|+-.+.+.... .. ..+......+..+.++||
T Consensus 12 ll~~A~~~~yA-V~AfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~v~~~A~~~~VPV 90 (349)
T 3elf_A 12 MLGQAKQNSYA-FPAINCTSSETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVIAAKYPVNV 90 (349)
T ss_dssp HHHHHHHTTCC-EEEEECCSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHTTSSSCE
T ss_pred HHHHHHHcCce-EEEEeeCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHHHHHHHHHCCCCE
Confidence 33444555655 43332333 7889999999999999999766532111 00 112334566778889999
Q ss_pred EEEcCCC
Q 044140 157 MIVKMPK 163 (166)
Q Consensus 157 lvv~~~~ 163 (166)
.+-=++.
T Consensus 91 aLHlDHg 97 (349)
T 3elf_A 91 ALHTDHC 97 (349)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 7754443
No 162
>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0
Probab=57.84 E-value=16 Score=26.56 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=37.4
Q ss_pred CCchhHHHHHHhhhCCcEEEEcccCCccc--hhhhcccHHHHHhh--cCCccEEEE
Q 044140 108 GDPRNVMTEAVERFHPTILVLGSHGYGAV--KRAVLGSVSDYSAH--HCSCTVMIV 159 (166)
Q Consensus 108 g~~~~~I~~~a~~~~~dliV~g~~~~~~~--~~~~~gs~~~~l~~--~~~~pVlvv 159 (166)
-+..+++++.|++.+..+|+-.+.+.... ...++......+.. ++++||.+-
T Consensus 31 ~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~~VPValH 86 (288)
T 3q94_A 31 LEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNITVPVAIH 86 (288)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCCCCcEEEE
Confidence 37789999999999999999866543221 11234556677788 889998774
No 163
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=57.74 E-value=50 Score=23.80 Aligned_cols=85 Identities=12% Similarity=0.087 Sum_probs=50.3
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 044140 5 TKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQK 84 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (166)
..+||+|-+.++..+..++-.+.+-- ..++ ++.+|-...+ +.
T Consensus 88 ~~~ri~vl~Sg~g~nl~~ll~~~~~g--~l~~----~i~~Visn~p-~~------------------------------- 129 (288)
T 3obi_A 88 TRRKVMLLVSQSDHCLADILYRWRVG--DLHM----IPTAIVSNHP-RE------------------------------- 129 (288)
T ss_dssp SCEEEEEEECSCCHHHHHHHHHHHTT--SSCE----EEEEEEESSC-GG-------------------------------
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHCC--CCCe----EEEEEEcCCC-hh-------------------------------
Confidence 45789999999988888877775542 3344 5555433210 10
Q ss_pred HHHHHHHHHHhCCCCcccEEeec-CCc---hhHHHHHHhhhCCcEEEEcccC
Q 044140 85 VADKATSICAKREVNDMPVHVMQ-GDP---RNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~-g~~---~~~I~~~a~~~~~dliV~g~~~ 132 (166)
+.+.+++.|++ +...-.. .+. ...+.+..++.++|+||+....
T Consensus 130 ----~~~~A~~~gIp-~~~~~~~~~~r~~~~~~~~~~l~~~~~Dlivlagy~ 176 (288)
T 3obi_A 130 ----TFSGFDFGDIP-FYHFPVNKDTRRQQEAAITALIAQTHTDLVVLARYM 176 (288)
T ss_dssp ----GSCCTTTTTCC-EEECCCCTTTHHHHHHHHHHHHHHHTCCEEEESSCC
T ss_pred ----HHHHHHHcCCC-EEEeCCCcccHHHHHHHHHHHHHhcCCCEEEhhhhh
Confidence 01224556887 4331111 111 2468888889999999997654
No 164
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=57.66 E-value=8.1 Score=19.29 Aligned_cols=25 Identities=8% Similarity=0.161 Sum_probs=19.7
Q ss_pred ccEEeecC-CchhHHHHHHhhhCCcE
Q 044140 101 MPVHVMQG-DPRNVMTEAVERFHPTI 125 (166)
Q Consensus 101 ~~~~v~~g-~~~~~I~~~a~~~~~dl 125 (166)
+..+++.. +..++|++|+++.++|-
T Consensus 12 vslhllvdpdmkdeiikyaqekdfdn 37 (54)
T 3gxq_A 12 VSLHLLVDPDMKDEIIKYAQEKDFDN 37 (54)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHSTTC
T ss_pred eEEEEeeCCchhHHHHHHHHHccchh
Confidence 55666665 78899999999988874
No 165
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=57.42 E-value=10 Score=27.43 Aligned_cols=52 Identities=6% Similarity=0.095 Sum_probs=38.2
Q ss_pred CCchhHHHHHHhhhCCcEEEEcccCCccch-hhhcccHHHHHhhcCCccEEEE
Q 044140 108 GDPRNVMTEAVERFHPTILVLGSHGYGAVK-RAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 108 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~-~~~~gs~~~~l~~~~~~pVlvv 159 (166)
-+..+++++.|++.++.+|+-.+.+..... -..+......+..+.++||.+-
T Consensus 28 ~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~VPValH 80 (286)
T 1gvf_A 28 AETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALH 80 (286)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTTSCBEEE
T ss_pred HHHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCCCcEEEE
Confidence 377899999999999999998776532111 1234567777888899998764
No 166
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=57.17 E-value=29 Score=20.87 Aligned_cols=48 Identities=10% Similarity=0.093 Sum_probs=27.5
Q ss_pred CchhHHHHHHhh-hCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEc
Q 044140 109 DPRNVMTEAVER-FHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVK 160 (166)
Q Consensus 109 ~~~~~I~~~a~~-~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~ 160 (166)
.......+..++ ..+|+|++...-.+ .... .....+-.. ..+|++++-
T Consensus 46 ~~~~~al~~l~~~~~~dlvilD~~l~~-~~g~---~~~~~l~~~~~~~~ii~ls 95 (138)
T 2b4a_A 46 PSGSAFFQHRSQLSTCDLLIVSDQLVD-LSIF---SLLDIVKEQTKQPSVLILT 95 (138)
T ss_dssp SSHHHHHHTGGGGGSCSEEEEETTCTT-SCHH---HHHHHHTTSSSCCEEEEEE
T ss_pred CCHHHHHHHHHhCCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCCEEEEE
Confidence 334555566777 78999999865322 1111 123333332 358998886
No 167
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=57.13 E-value=29 Score=20.82 Aligned_cols=51 Identities=14% Similarity=0.247 Sum_probs=28.5
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
.......+..++..+|+|++...-.+....+ .....+-....+|++++-..
T Consensus 41 ~~~~~a~~~~~~~~~dlii~d~~~~~~~~g~---~~~~~l~~~~~~~ii~ls~~ 91 (140)
T 3cg0_A 41 DNGEEAVRCAPDLRPDIALVDIMLCGALDGV---ETAARLAAGCNLPIIFITSS 91 (140)
T ss_dssp SSHHHHHHHHHHHCCSEEEEESSCCSSSCHH---HHHHHHHHHSCCCEEEEECC
T ss_pred CCHHHHHHHHHhCCCCEEEEecCCCCCCCHH---HHHHHHHhCCCCCEEEEecC
Confidence 3345555666777899999986532111111 12233332356899888654
No 168
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=56.77 E-value=40 Score=23.07 Aligned_cols=66 Identities=9% Similarity=0.007 Sum_probs=38.6
Q ss_pred HHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEE--cccCCccchhhhcccHHHHHhhcC---CccEEEE
Q 044140 90 TSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVL--GSHGYGAVKRAVLGSVSDYSAHHC---SCTVMIV 159 (166)
Q Consensus 90 ~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~--g~~~~~~~~~~~~gs~~~~l~~~~---~~pVlvv 159 (166)
...++..|.+ +. ..-..-+.+.|++.++++++|+|.+ ......... .+..+.+.+-... ++||++=
T Consensus 113 ~~~l~~~G~~-Vi-~LG~~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~--~~~~~i~~l~~~~~~~~v~v~vG 183 (215)
T 3ezx_A 113 TTMLGANGFQ-IV-DLGVDVLNENVVEEAAKHKGEKVLLVGSALMTTSML--GQKDLMDRLNEEKLRDSVKCMFG 183 (215)
T ss_dssp HHHHHHTSCE-EE-ECCSSCCHHHHHHHHHHTTTSCEEEEEECSSHHHHT--HHHHHHHHHHHTTCGGGSEEEEE
T ss_pred HHHHHHCCCe-EE-EcCCCCCHHHHHHHHHHcCCCEEEEEchhcccCcHH--HHHHHHHHHHHcCCCCCCEEEEE
Confidence 3345556666 21 1223478999999999999999999 543222111 2334445444443 4677663
No 169
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=56.33 E-value=29 Score=20.64 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=26.1
Q ss_pred hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCCC
Q 044140 112 NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMPK 163 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~~ 163 (166)
....+..++..+|+|++...-.+. ... .....+-.. ..+|++++-...
T Consensus 36 ~~a~~~~~~~~~dlii~d~~l~~~-~g~---~~~~~l~~~~~~~~ii~~s~~~ 84 (134)
T 3f6c_A 36 GSAVQRVETLKPDIVIIDVDIPGV-NGI---QVLETLRKRQYSGIIIIVSAKN 84 (134)
T ss_dssp TTHHHHHHHHCCSEEEEETTCSSS-CHH---HHHHHHHHTTCCSEEEEEECC-
T ss_pred HHHHHHHHhcCCCEEEEecCCCCC-ChH---HHHHHHHhcCCCCeEEEEeCCC
Confidence 334455566789999998653221 111 123333333 357888876543
No 170
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=55.85 E-value=22 Score=23.68 Aligned_cols=7 Identities=0% Similarity=0.154 Sum_probs=3.0
Q ss_pred EEEEeec
Q 044140 43 VLIHARP 49 (166)
Q Consensus 43 ~lv~v~~ 49 (166)
.++++.+
T Consensus 7 ri~~iSD 13 (228)
T 1uf3_A 7 YILATSN 13 (228)
T ss_dssp EEEEEEC
T ss_pred EEEEEee
Confidence 3444433
No 171
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=55.81 E-value=61 Score=24.15 Aligned_cols=49 Identities=6% Similarity=-0.055 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCcc
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGA 135 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~ 135 (166)
+..+.+.+.+.+.|++ ++..-+.......+.+... .+|.||+|+.-+..
T Consensus 272 ~la~~i~~~l~~~g~~-v~~~~l~~~~~~~~~~~l~--~~D~iiigsP~y~~ 320 (414)
T 2q9u_A 272 RMALALLDGARSTGCE-TVLLEMTSSDITKVALHTY--DSGAVAFASPTLNN 320 (414)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEEGGGCCHHHHHHHHH--TCSEEEEECCCBTT
T ss_pred HHHHHHHHHHHhCCCe-EEEEEcCcCCHHHHHHHHH--hCCEEEEEcCccCc
Confidence 3334444445555665 5443333322334444444 89999999886543
No 172
>3lqk_A Dipicolinate synthase subunit B; flavoprotein, PSI2, MCSG, structural protein structure initiative, midwest center for structural genomics; 2.10A {Bacillus halodurans}
Probab=55.72 E-value=12 Score=25.46 Aligned_cols=38 Identities=8% Similarity=-0.025 Sum_probs=30.1
Q ss_pred CCCCEEEEEEcCChhHH-HHHHHHHHhcCCCCCCCCceEEEEEEe
Q 044140 4 QTKPIMMVAIDDSNHSY-YALEWALDYFFPPFAPNHTFQLVLIHA 47 (166)
Q Consensus 4 ~~~~~Ilv~vd~s~~s~-~al~~a~~la~~~~~~~~~~~l~lv~v 47 (166)
...++|++++.|+-... ++++..-.+.+ . +. +++++-.
T Consensus 5 l~~k~I~lgiTGs~aa~~k~~~ll~~L~~-~-g~----eV~vv~T 43 (201)
T 3lqk_A 5 FAGKHVGFGLTGSHCTYHEVLPQMERLVE-L-GA----KVTPFVT 43 (201)
T ss_dssp CTTCEEEEECCSCGGGGGGTHHHHHHHHH-T-TC----EEEEECS
T ss_pred cCCCEEEEEEEChHHHHHHHHHHHHHHhh-C-CC----EEEEEEC
Confidence 34589999999998888 89998888866 4 66 8777643
No 173
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}
Probab=54.92 E-value=59 Score=23.69 Aligned_cols=50 Identities=10% Similarity=0.008 Sum_probs=33.2
Q ss_pred hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 112 NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
-.+.+.+++.++|-+++....+.....--+=..-+.|...++.||++.--
T Consensus 109 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 158 (315)
T 3na8_A 109 VRRAQFAESLGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNN 158 (315)
T ss_dssp HHHHHHHHHTTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 34457788999999999877554332221122345677788999998753
No 174
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=54.91 E-value=47 Score=23.29 Aligned_cols=70 Identities=11% Similarity=0.156 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHhCCCCcccEEeec-C-------C--chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQ-G-------D--PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCS 153 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~-g-------~--~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~ 153 (166)
+....+.+.+.+.|++ +...+.. | + ....+.+.+.+.++|.|.++.. ..+ ....++...++
T Consensus 132 ~~~~~v~~~~~~~g~~-viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~~~--~~~------~~l~~i~~~~~ 202 (273)
T 2qjg_A 132 RDLGMIAETCEYWGMP-LIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTSYT--GDI------DSFRDVVKGCP 202 (273)
T ss_dssp HHHHHHHHHHHHHTCC-EEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEECCC--SSH------HHHHHHHHHCS
T ss_pred HHHHHHHHHHHHcCCC-EEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEECCC--CCH------HHHHHHHHhCC
Confidence 3455666667777888 6554411 1 1 1233447788899999998731 111 12445666778
Q ss_pred ccEEEEcCC
Q 044140 154 CTVMIVKMP 162 (166)
Q Consensus 154 ~pVlvv~~~ 162 (166)
+||+..-..
T Consensus 203 ipvva~GGi 211 (273)
T 2qjg_A 203 APVVVAGGP 211 (273)
T ss_dssp SCEEEECCS
T ss_pred CCEEEEeCC
Confidence 999887543
No 175
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=54.63 E-value=27 Score=24.53 Aligned_cols=22 Identities=14% Similarity=-0.179 Sum_probs=16.2
Q ss_pred hhHHHHHHhhhCCcEEEEcccCCc
Q 044140 111 RNVMTEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~~~~~ 134 (166)
...+.+... .+|.||+++.-+.
T Consensus 89 ~~~l~~~i~--~AD~iI~~sP~Yn 110 (247)
T 2q62_A 89 VQELRELSI--WSEGQVWVSPERH 110 (247)
T ss_dssp HHHHHHHHH--HCSEEEEEEECSS
T ss_pred HHHHHHHHH--HCCEEEEEeCCCC
Confidence 455666666 8999999988654
No 176
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=54.62 E-value=56 Score=25.18 Aligned_cols=68 Identities=13% Similarity=0.231 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCchh----HHHHHHhhhCCcEEE-EcccCCccchhhhcccHHHHHhhcCCccEEEE
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPRN----VMTEAVERFHPTILV-LGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~~----~I~~~a~~~~~dliV-~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 159 (166)
..+++.+.+.+.|+. +...+..|++.. .+.+.+++ ++|+|| +|...- ..++..+......|++.|
T Consensus 106 ~~~~v~~~L~~~gi~-~~~~~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSv--------iD~AK~iA~~~giP~I~I 175 (450)
T 1ta9_A 106 CANKIVDSLSQNGMT-VTKLVFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKT--------MDSAKYIAHSMNLPSIIC 175 (450)
T ss_dssp THHHHHHHHHHTTCE-EEEEEECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHH--------HHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHCCCe-EEEEeeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHH--------HHHHHHHHHhcCCCEEEE
Confidence 567777777778887 654556676544 33344455 889888 553211 223333334457899999
Q ss_pred cCC
Q 044140 160 KMP 162 (166)
Q Consensus 160 ~~~ 162 (166)
|=.
T Consensus 176 PTT 178 (450)
T 1ta9_A 176 PTT 178 (450)
T ss_dssp ESS
T ss_pred eCC
Confidence 853
No 177
>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1
Probab=53.87 E-value=70 Score=24.25 Aligned_cols=35 Identities=14% Similarity=0.065 Sum_probs=28.2
Q ss_pred CCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeec
Q 044140 6 KPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARP 49 (166)
Q Consensus 6 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~ 49 (166)
..+++|++.|..+|..++..+.+ .+. ++.++|+..
T Consensus 187 ~~kvlvalSGGvDS~vll~ll~~-----~G~----~v~av~v~~ 221 (413)
T 2c5s_A 187 GGKVMVLLSGGIDSPVAAYLTMK-----RGV----SVEAVHFHS 221 (413)
T ss_dssp TEEEEEECCSSSHHHHHHHHHHH-----BTE----EEEEEEEEC
T ss_pred CCeEEEEeCCCChHHHHHHHHHH-----cCC----cEEEEEEeC
Confidence 47899999999999988877654 245 899999864
No 178
>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0
Probab=53.17 E-value=56 Score=22.89 Aligned_cols=37 Identities=3% Similarity=-0.040 Sum_probs=28.5
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeec
Q 044140 5 TKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARP 49 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~ 49 (166)
..++++|+++|.-+|..++..+.+... . +++.+|+..
T Consensus 25 g~~~vvv~lSGGiDSsv~a~l~~~~~g----~----~v~av~~~~ 61 (249)
T 3p52_A 25 QSQGVVLGLSGGIDSALVATLCKRALK----E----NVFALLMPT 61 (249)
T ss_dssp SCSEEEEECCSSHHHHHHHHHHHHHHT----T----SEEEEECCS
T ss_pred CCCCEEEEcCCCHHHHHHHHHHHHHcC----C----cEEEEEecC
Confidence 468999999999999888877765433 4 788888754
No 179
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=52.24 E-value=37 Score=20.54 Aligned_cols=53 Identities=4% Similarity=0.014 Sum_probs=28.1
Q ss_pred CCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCCC
Q 044140 108 GDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMPK 163 (166)
Q Consensus 108 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 163 (166)
.+..+++....+...+|+|++...-..+...+ .....+-....+||+++-...
T Consensus 36 ~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~ii~ls~~~ 88 (140)
T 3h5i_A 36 LTGEAAVEKVSGGWYPDLILMDIELGEGMDGV---QTALAIQQISELPVVFLTAHT 88 (140)
T ss_dssp SSHHHHHHHHHTTCCCSEEEEESSCSSSCCHH---HHHHHHHHHCCCCEEEEESSS
T ss_pred cChHHHHHHHhcCCCCCEEEEeccCCCCCCHH---HHHHHHHhCCCCCEEEEECCC
Confidence 34444444333337899999986532111111 123333334578999886543
No 180
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=52.17 E-value=14 Score=26.20 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=19.2
Q ss_pred hhHHHHHHhhhCCcEEEEcccCCc
Q 044140 111 RNVMTEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~~~~~ 134 (166)
+..|...+++.++|+|++|....+
T Consensus 105 A~~La~~i~~~~~dlVl~G~~s~d 128 (255)
T 1efv_B 105 ARVLAKLAEKEKVDLVLLGKQAID 128 (255)
T ss_dssp HHHHHHHHHHHTCSEEEEESCCTT
T ss_pred HHHHHHHHHhcCCCEEEEeCcccC
Confidence 456778888889999999987654
No 181
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A
Probab=52.15 E-value=65 Score=23.42 Aligned_cols=50 Identities=12% Similarity=0.016 Sum_probs=32.6
Q ss_pred hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 112 NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
-++.+.+++.++|-+++....+.....--+=..-+.|...++.||++.-.
T Consensus 108 i~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 157 (314)
T 3qze_A 108 VALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNV 157 (314)
T ss_dssp HHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 33457788999999999876544332211112345677788999999753
No 182
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=52.01 E-value=42 Score=22.57 Aligned_cols=48 Identities=4% Similarity=0.027 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCCcccEEeec-CCchhHHHHHHhhhCCcEEEEcccCCc
Q 044140 84 KVADKATSICAKREVNDMPVHVMQ-GDPRNVMTEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~-g~~~~~I~~~a~~~~~dliV~g~~~~~ 134 (166)
.+.+.+.+.+++.|.+ ++..-+. ++....+.+..+ .+|.||+++.-..
T Consensus 34 ~l~~~~~~~~~~~g~~-v~~~dL~~~~d~~~~~~~l~--~AD~iV~~~P~y~ 82 (204)
T 2amj_A 34 TLTEVADGTLRDLGHD-VRIVRADSDYDVKAEVQNFL--WADVVIWQMPGWW 82 (204)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEESSSCCCHHHHHHHHH--HCSEEEEEEECBT
T ss_pred HHHHHHHHHHHHcCCE-EEEEeCCccccHHHHHHHHH--hCCEEEEECCccc
Confidence 3444555555555766 6654444 445566666666 8999999987543
No 183
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=51.86 E-value=35 Score=20.13 Aligned_cols=50 Identities=14% Similarity=0.175 Sum_probs=28.4
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc---CCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH---CSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~~ 162 (166)
......++..++..+|+|++...-.+ ...+ ....++-.. ..+||+++-..
T Consensus 33 ~~~~~al~~l~~~~~dlvllD~~~p~-~~g~---~~~~~l~~~~~~~~~pii~~s~~ 85 (122)
T 3gl9_A 33 ENGQIALEKLSEFTPDLIVLXIMMPV-MDGF---TVLKKLQEKEEWKRIPVIVLTAK 85 (122)
T ss_dssp SSHHHHHHHHTTBCCSEEEECSCCSS-SCHH---HHHHHHHTSTTTTTSCEEEEESC
T ss_pred CCHHHHHHHHHhcCCCEEEEeccCCC-CcHH---HHHHHHHhcccccCCCEEEEecC
Confidence 34445566677789999999854221 1111 123333222 35899988654
No 184
>4f2d_A L-arabinose isomerase; structural genomics, PSI-1, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: MSE RB0; 2.30A {Escherichia coli} PDB: 2ajt_A 2hxg_A
Probab=51.25 E-value=87 Score=24.57 Aligned_cols=44 Identities=9% Similarity=-0.040 Sum_probs=29.7
Q ss_pred hhHHHHHH-hhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 111 RNVMTEAV-ERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 111 ~~~I~~~a-~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
...+++.+ +..++|.||+-.+..+... ..-.+++..++||++..
T Consensus 60 ~~~~~~~~n~~~~vdgvi~~~~TFs~a~------~~i~~l~~l~~PvL~~~ 104 (500)
T 4f2d_A 60 ITAICRDANYDDRCAGLVVWLHTFSPAK------MWINGLTMLNKPLLQFH 104 (500)
T ss_dssp HHHHHHHHHHCTTEEEEEEECCSCCCTH------HHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHhccccCCcEEEEeCCcCccHH------HHHHHHHhcCCCEEEEe
Confidence 33444455 4558999999877666433 33456677899999974
No 185
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A
Probab=50.78 E-value=66 Score=23.04 Aligned_cols=48 Identities=10% Similarity=0.125 Sum_probs=32.3
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchh-hhcccHHHHHhhcCCccEEEEcC
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKR-AVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~-~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+.+++.++|-+++....+..... -+. ..-+.|...++.||++...
T Consensus 87 ~la~~a~~~Gadavlv~~P~y~~~~~~~l~-~~f~~ia~a~~lPiilYn~ 135 (291)
T 3tak_A 87 ELTKAAKDLGADAALLVTPYYNKPTQEGLY-QHYKAIAEAVELPLILYNV 135 (291)
T ss_dssp HHHHHHHHHTCSEEEEECCCSSCCCHHHHH-HHHHHHHHHCCSCEEEEEC
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCHHHHH-HHHHHHHHhcCCCEEEEec
Confidence 44577889999999998765443322 222 2345677788999998753
No 186
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=50.60 E-value=40 Score=20.47 Aligned_cols=52 Identities=8% Similarity=0.034 Sum_probs=29.7
Q ss_pred cCCchhHHHHHHhh-hCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCC
Q 044140 107 QGDPRNVMTEAVER-FHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMP 162 (166)
Q Consensus 107 ~g~~~~~I~~~a~~-~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 162 (166)
..+..+++....+. ..+|+|++...-.+ ...+ .....+-.. ..+||+++-..
T Consensus 51 ~~~~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~lt~~ 104 (146)
T 4dad_A 51 TVGRAAQIVQRTDGLDAFDILMIDGAALD-TAEL---AAIEKLSRLHPGLTCLLVTTD 104 (146)
T ss_dssp ECCCHHHHTTCHHHHTTCSEEEEECTTCC-HHHH---HHHHHHHHHCTTCEEEEEESC
T ss_pred eCCHHHHHHHHHhcCCCCCEEEEeCCCCC-ccHH---HHHHHHHHhCCCCcEEEEeCC
Confidence 44556666666666 79999999865322 1111 123333333 35788888654
No 187
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=50.59 E-value=30 Score=25.39 Aligned_cols=60 Identities=15% Similarity=0.283 Sum_probs=34.4
Q ss_pred HHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccC---CccchhhhcccH-HHHHhhcCCccEEEEc
Q 044140 92 ICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHG---YGAVKRAVLGSV-SDYSAHHCSCTVMIVK 160 (166)
Q Consensus 92 ~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~---~~~~~~~~~gs~-~~~l~~~~~~pVlvv~ 160 (166)
.+.+.|++ +.. ...+....+ .+ .+|.+++|+.. .|.+-. -.|+. ..-+.++.++|++|+-
T Consensus 167 ~L~~~gI~-vtl--i~Dsa~~~~---m~--~vd~VivGAd~i~~nG~v~n-kiGT~~iAl~Ak~~~vP~~V~a 230 (315)
T 3ecs_A 167 ALCHLNVP-VTV--VLDAAVGYI---ME--KADLVIVGAEGVVENGGIIN-KIGTNQMAVCAKAQNKPFYVVA 230 (315)
T ss_dssp HHHTTTCC-EEE--ECGGGHHHH---GG--GCSEEEEECSEECTTSCEEE-ETTHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHcCCC-EEE--EehhHHHHH---HH--hCCEEEECceEEecCCCeee-hhhhHHHHHHHHHhCCCEEEEe
Confidence 34456887 433 222222222 33 79999999875 222222 23554 3445667789999983
No 188
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=50.17 E-value=28 Score=22.78 Aligned_cols=40 Identities=8% Similarity=0.072 Sum_probs=24.9
Q ss_pred HHHHHHhCCCCcccEEeecCCchhHHHHHHhh----hCCcEEEEc
Q 044140 89 ATSICAKREVNDMPVHVMQGDPRNVMTEAVER----FHPTILVLG 129 (166)
Q Consensus 89 ~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~----~~~dliV~g 129 (166)
+.+.+.+.|.. +......+|..+.|.+..++ .++|+||..
T Consensus 36 l~~~L~~~G~~-v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 79 (169)
T 1y5e_A 36 LHELLKEAGHK-VTSYEIVKDDKESIQQAVLAGYHKEDVDVVLTN 79 (169)
T ss_dssp HHHHHHHHTCE-EEEEEEECSSHHHHHHHHHHHHTCTTCSEEEEE
T ss_pred HHHHHHHCCCe-EeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 34445566887 66555556665565555443 379999884
No 189
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=50.16 E-value=29 Score=22.76 Aligned_cols=41 Identities=5% Similarity=-0.038 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCCcccEEeecCCchhHHHHHHh----hhCCcEEEEc
Q 044140 88 KATSICAKREVNDMPVHVMQGDPRNVMTEAVE----RFHPTILVLG 129 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~----~~~~dliV~g 129 (166)
.+.+.+.+.|+. +......+|..+.|.+..+ ...+|+||..
T Consensus 44 ~L~~~L~~~G~~-v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 44 IIKQLLIENGHK-IIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHHTTCE-EEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHHCCCE-EEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 355566778999 7766667776666655443 3478999985
No 190
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A
Probab=50.03 E-value=70 Score=23.12 Aligned_cols=50 Identities=10% Similarity=0.009 Sum_probs=33.4
Q ss_pred hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 112 NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
-++.+.+++.++|-+++....+.....--+=..-..|...++.||++...
T Consensus 100 i~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~ 149 (304)
T 3l21_A 100 IRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATELPMLLYDI 149 (304)
T ss_dssp HHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTSCSSCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34457788999999999876544332221112345688888999999853
No 191
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0
Probab=49.83 E-value=72 Score=23.19 Aligned_cols=47 Identities=4% Similarity=-0.131 Sum_probs=29.9
Q ss_pred HHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 114 MTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 114 I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
+.+.+++.++|-+++...-+.....--+=..-..|...++.||++.-
T Consensus 98 la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn 144 (316)
T 3e96_A 98 LGNAAKAAGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYF 144 (316)
T ss_dssp HHHHHHHHTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 45678889999999986644332221111223456667789999875
No 192
>3tqk_A Phospho-2-dehydro-3-deoxyheptonate aldolase; transferase; 2.30A {Francisella tularensis}
Probab=49.52 E-value=78 Score=23.56 Aligned_cols=130 Identities=13% Similarity=0.087 Sum_probs=70.7
Q ss_pred CEEEEEEcCC--hhHHHHHHHHHHhcCCCC----CCCCceEEEEEEeec-CCCCCcCCCCCCCCCCC-chhhHHHHHHHH
Q 044140 7 PIMMVAIDDS--NHSYYALEWALDYFFPPF----APNHTFQLVLIHARP-NPPSLLGLSGAGQGSAG-SAHVINLVELDT 78 (166)
Q Consensus 7 ~~Ilv~vd~s--~~s~~al~~a~~la~~~~----~~~~~~~l~lv~v~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 78 (166)
.+++|.+.+. ++-+.++++|.+++. .. +. -+.++.++- .+...+.+.+....+.. .....
T Consensus 49 ~rllVIaGPCSied~eq~leyA~~Lk~-~~~~~~d~----l~~vmR~y~~KPRTs~g~kGL~nDP~ld~s~~i------- 116 (346)
T 3tqk_A 49 DRVAVVVGPCSIHDPAAAIEYATKLKE-QVKKFHKD----ILIIMRVYFEKPRTTIGWKGFINDPDLDNSYNI------- 116 (346)
T ss_dssp CSEEEEEECSSCSCHHHHHHHHHHHHH-HHHHHTTT----EEEEEECCCCCCCSSCSCCCTTTCTTSSSCCCH-------
T ss_pred CCEEEEEecCccCCHHHHHHHHHHHHH-HHhhhccc----ceEEeeecccCCCCCcCccccccCCCCCCCccH-------
Confidence 5688888874 567788899988875 31 22 466666653 23322333322110000 00011
Q ss_pred HHHHHHHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEE
Q 044140 79 KKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMI 158 (166)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 158 (166)
...-+++.++.....+.|++ +-.++..-...+-+.+ -+|.+.+|++.-... .-..+....+|||++
T Consensus 117 -~~GL~~~R~ll~~~~e~GLp-iatE~ld~~~~qyv~d-----lvs~~aIGARt~enq-------~hre~asg~s~PVg~ 182 (346)
T 3tqk_A 117 -NKGLRLARNLLSDLTNMGLP-CATEFLDVITPQYFAE-----LITWGAIGARTVESQ-------VHRELASGLSASIGF 182 (346)
T ss_dssp -HHHHHHHHHHHHHHHHTTCC-EEEECCSSSGGGGTGG-----GCSEEEECGGGTTCH-------HHHHHHTTCSSEEEE
T ss_pred -HHHHHHHHHHHHHHHhcCCC-EEEEecCcCCHHHHHH-----HhheeeeCcccccCH-------HHHHHhcCCCCceEE
Confidence 11222222222234667999 7777776554443332 478999998854331 224566788999987
Q ss_pred EcCC
Q 044140 159 VKMP 162 (166)
Q Consensus 159 v~~~ 162 (166)
=.+.
T Consensus 183 Kngt 186 (346)
T 3tqk_A 183 KNAT 186 (346)
T ss_dssp ECCT
T ss_pred eCCC
Confidence 6543
No 193
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=49.27 E-value=26 Score=25.83 Aligned_cols=66 Identities=8% Similarity=-0.016 Sum_probs=37.6
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCc----hhHHHHHHhhhCCcEEE-EcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDP----RNVMTEAVERFHPTILV-LGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~----~~~I~~~a~~~~~dliV-~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.+++.+.+++.|+. +......+++ .+.+ +.+++.++|+|| +|...- ..++..+......|++.||
T Consensus 50 ~~~v~~~L~~~g~~-~~~~~~~~~~~~~~v~~~-~~~~~~~~d~IIavGGGsv--------~D~aK~vA~~~~~p~i~IP 119 (354)
T 3ce9_A 50 GETIEKSIKSSNIE-IEAVETVKNIDFDEIGTN-AFKIPAEVDALIGIGGGKA--------IDAVKYMAFLRKLPFISVP 119 (354)
T ss_dssp HHHHHHHHHTTTCE-EEEEEEECCCBHHHHHHH-HTTSCTTCCEEEEEESHHH--------HHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHcCCe-EEEEecCCCCCHHHHHHH-HHhhhcCCCEEEEECChHH--------HHHHHHHHhhcCCCEEEec
Confidence 45666666777877 6543312332 3445 666777889988 553211 2233333333578999888
Q ss_pred C
Q 044140 161 M 161 (166)
Q Consensus 161 ~ 161 (166)
=
T Consensus 120 T 120 (354)
T 3ce9_A 120 T 120 (354)
T ss_dssp S
T ss_pred C
Confidence 4
No 194
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=49.10 E-value=45 Score=20.61 Aligned_cols=50 Identities=4% Similarity=0.055 Sum_probs=29.2
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc---CCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH---CSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~~ 162 (166)
......++..++..+|+|++...-.+ ...+ .+...+-.. ..+|++++-..
T Consensus 38 ~~~~~al~~l~~~~~dlii~D~~l~~-~~g~---~~~~~lr~~~~~~~~pii~~s~~ 90 (154)
T 3gt7_A 38 RNGREAVRFLSLTRPDLIISDVLMPE-MDGY---ALCRWLKGQPDLRTIPVILLTIL 90 (154)
T ss_dssp SSHHHHHHHHTTCCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTSCEEEEECC
T ss_pred CCHHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCCcCCCCEEEEECC
Confidence 34455666777789999999865322 1111 123333333 46899888654
No 195
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=49.10 E-value=41 Score=20.22 Aligned_cols=49 Identities=4% Similarity=-0.074 Sum_probs=28.4
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 162 (166)
.......+..++..+|+|++.. -. ..... .....+-.. ..+||+++-..
T Consensus 35 ~~~~~a~~~l~~~~~dlvi~d~-~~-~~~g~---~~~~~l~~~~~~~pii~ls~~ 84 (142)
T 2qxy_A 35 KNEQEAFTFLRREKIDLVFVDV-FE-GEESL---NLIRRIREEFPDTKVAVLSAY 84 (142)
T ss_dssp SSHHHHHHHHTTSCCSEEEEEC-TT-THHHH---HHHHHHHHHCTTCEEEEEESC
T ss_pred CCHHHHHHHHhccCCCEEEEeC-CC-CCcHH---HHHHHHHHHCCCCCEEEEECC
Confidence 3445566677778999999986 32 22111 123333333 35899888654
No 196
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=48.76 E-value=89 Score=23.97 Aligned_cols=22 Identities=9% Similarity=0.166 Sum_probs=16.0
Q ss_pred HHHHHhhhCCcEEEEcccCCcc
Q 044140 114 MTEAVERFHPTILVLGSHGYGA 135 (166)
Q Consensus 114 I~~~a~~~~~dliV~g~~~~~~ 135 (166)
.+..+...++|+|++.+.++..
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHHhcCCCEEEEECCCCcc
Confidence 3455556689999999887655
No 197
>3dff_A Teicoplanin pseudoaglycone deacetylases ORF2; lipoglycopeptide, zinc dependen hydrolase; HET: MSE PG4; 1.60A {Actinoplanes teichomyceticus} PDB: 2x9l_A* 3dfk_A* 3dfm_A 2xad_A*
Probab=48.70 E-value=69 Score=22.71 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=34.3
Q ss_pred hhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEE
Q 044140 111 RNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 159 (166)
.+.|.+..++.+.|+|+.-....+...+...+..+....+..++|+++.
T Consensus 137 ~~~l~~~ir~~~PdvV~t~~~~d~HpDH~~~~~a~~~A~~~~~~~~~~~ 185 (273)
T 3dff_A 137 ADDIRSIIDEFDPTLVVTCAAIGEHPDHEATRDAALFATHEKNVPVRLW 185 (273)
T ss_dssp HHHHHHHHHHHCCSEEEEECCTTCCHHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCChHHHHHHHHHHHHHHHcCCCEEEe
Confidence 3456678889999999996444444555566667777777777776665
No 198
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=48.68 E-value=15 Score=26.83 Aligned_cols=11 Identities=18% Similarity=0.323 Sum_probs=8.9
Q ss_pred EEEEEEeecCC
Q 044140 41 QLVLIHARPNP 51 (166)
Q Consensus 41 ~l~lv~v~~~~ 51 (166)
.+.++|+.+.-
T Consensus 18 ~mrilh~SD~H 28 (336)
T 2q8u_A 18 ELKILHTSDWH 28 (336)
T ss_dssp EEEEEEEECCC
T ss_pred ceEEEEECccc
Confidence 78899998764
No 199
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=48.60 E-value=79 Score=23.33 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCc
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~ 134 (166)
..+.+.+.+.+.|++ ++..-+.......+..... .+|.||+|+.-+.
T Consensus 273 la~~i~~~l~~~g~~-v~~~~~~~~~~~~~~~~l~--~~d~iiigsP~y~ 319 (404)
T 2ohh_A 273 MAHAIAEGAMSEGVD-VRVYCLHEDDRSEIVKDIL--ESGAIALGAPTIY 319 (404)
T ss_dssp HHHHHHHHHHTTTCE-EEEEETTTSCHHHHHHHHH--TCSEEEEECCEET
T ss_pred HHHHHHHHHHhCCCe-EEEEECCCCCHHHHHHHHH--HCCEEEEECcccc
Confidence 334444455555666 5544333333445555555 8999999987543
No 200
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=48.37 E-value=41 Score=19.93 Aligned_cols=51 Identities=10% Similarity=0.010 Sum_probs=29.4
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc---CCccEEEEcCCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH---CSCTVMIVKMPK 163 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~~~ 163 (166)
.......+..++..+|+|++...-.+ ...+ .....+-.. ..+||+++-...
T Consensus 34 ~~~~~a~~~l~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~~s~~~ 87 (133)
T 3nhm_A 34 ADGASGLQQALAHPPDVLISDVNMDG-MDGY---ALCGHFRSEPTLKHIPVIFVSGYA 87 (133)
T ss_dssp SSHHHHHHHHHHSCCSEEEECSSCSS-SCHH---HHHHHHHHSTTTTTCCEEEEESCC
T ss_pred CCHHHHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCccCCCCEEEEeCCC
Confidence 34455566677789999999865322 1111 123333332 368999886543
No 201
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=48.36 E-value=89 Score=23.88 Aligned_cols=30 Identities=3% Similarity=-0.064 Sum_probs=20.5
Q ss_pred cCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEee
Q 044140 14 DDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHAR 48 (166)
Q Consensus 14 d~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~ 48 (166)
.++-.+.-+...|..++. ..+- .+.++-..
T Consensus 109 ~GvGKTT~a~~LA~~l~~-~~G~----kVllvd~D 138 (433)
T 2xxa_A 109 QGAGKTTSVGKLGKFLRE-KHKK----KVLVVSAD 138 (433)
T ss_dssp TTSSHHHHHHHHHHHHHH-TSCC----CEEEEECC
T ss_pred CCCCHHHHHHHHHHHHHH-hcCC----eEEEEecC
Confidence 445567888888888887 5355 67766553
No 202
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=48.30 E-value=22 Score=24.19 Aligned_cols=72 Identities=3% Similarity=-0.092 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc---CCccEEEE
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH---CSCTVMIV 159 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv 159 (166)
.+..+.+.+++.|++ +...-+.....+.+.+..+ ++|.|+++........+.+-.+-....+++ ...|++-+
T Consensus 45 ~~~s~~~a~~~lG~~-v~~~~i~~~~~~~~~~~l~--~ad~I~l~GG~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~ 119 (206)
T 3l4e_A 45 YVEAGKKALESLGLL-VEELDIATESLGEITTKLR--KNDFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGE 119 (206)
T ss_dssp HHHHHHHHHHHTTCE-EEECCTTTSCHHHHHHHHH--HSSEEEECCSCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHcCCe-EEEEEecCCChHHHHHHHH--hCCEEEECCCCHHHHHHHHHHCChHHHHHHHHHcCCeEEEE
Confidence 345556666667776 5543222233445555556 799999986322233333323222333333 25676654
No 203
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0
Probab=48.25 E-value=74 Score=22.87 Aligned_cols=48 Identities=13% Similarity=0.108 Sum_probs=32.4
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchh-hhcccHHHHHhhcCCccEEEEcC
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKR-AVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~-~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+.+++.++|-+++....+..... -+. ..-+.|...++.||++...
T Consensus 93 ~la~~a~~~Gadavlv~~P~y~~~~~~~l~-~~f~~va~a~~lPiilYn~ 141 (297)
T 3flu_A 93 ALSQAAEKAGADYTLSVVPYYNKPSQEGIY-QHFKTIAEATSIPMIIYNV 141 (297)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHH-HHHHHHHHHCCSCEEEEEC
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCHHHHH-HHHHHHHHhCCCCEEEEEC
Confidence 44577889999999988765443322 222 2345677788999998753
No 204
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=48.14 E-value=45 Score=20.39 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=31.2
Q ss_pred eecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCC
Q 044140 105 VMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMP 162 (166)
Q Consensus 105 v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 162 (166)
+..-.......+..++..+|+|++...-... ..+ .....+-.. ..+||+++-..
T Consensus 49 v~~~~~~~~al~~l~~~~~dlii~D~~l~~~-~g~---~~~~~l~~~~~~~~ii~ls~~ 103 (150)
T 4e7p_A 49 VLQAKNGQEAIQLLEKESVDIAILDVEMPVK-TGL---EVLEWIRSEKLETKVVVVTTF 103 (150)
T ss_dssp EEEESSHHHHHHHHTTSCCSEEEECSSCSSS-CHH---HHHHHHHHTTCSCEEEEEESC
T ss_pred EEEECCHHHHHHHhhccCCCEEEEeCCCCCC-cHH---HHHHHHHHhCCCCeEEEEeCC
Confidence 3333455566677788899999998653221 111 123333332 35888888654
No 205
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=47.96 E-value=40 Score=19.71 Aligned_cols=49 Identities=12% Similarity=0.095 Sum_probs=27.4
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh-cCCccEEEEcCC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH-HCSCTVMIVKMP 162 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~~ 162 (166)
......+..++..+|++++...-.+ .... .....+-. ...+|++++-..
T Consensus 35 ~~~~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (124)
T 1srr_A 35 NGLQALDIVTKERPDLVLLDMKIPG-MDGI---EILKRMKVIDENIRVIIMTAY 84 (124)
T ss_dssp SHHHHHHHHHHHCCSEEEEESCCTT-CCHH---HHHHHHHHHCTTCEEEEEESS
T ss_pred CHHHHHHHHhccCCCEEEEecCCCC-CCHH---HHHHHHHHhCCCCCEEEEEcc
Confidence 3445556666778999999865322 1111 12333332 346888888543
No 206
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=47.71 E-value=44 Score=20.18 Aligned_cols=67 Identities=7% Similarity=0.022 Sum_probs=36.6
Q ss_pred HHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh---cCCccEEEEcCC
Q 044140 89 ATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH---HCSCTVMIVKMP 162 (166)
Q Consensus 89 ~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~~~ 162 (166)
+...+.+.|.. + .+..-.......+..++..+|+|++...-.+ ...+ .....+-. ...+|++++-..
T Consensus 21 l~~~L~~~~~~-~--~v~~~~~~~~a~~~l~~~~~dlii~D~~l~~-~~g~---~~~~~lr~~~~~~~~pii~~s~~ 90 (144)
T 3kht_A 21 IRRVLDRKDIH-C--QLEFVDNGAKALYQVQQAKYDLIILDIGLPI-ANGF---EVMSAVRKPGANQHTPIVILTDN 90 (144)
T ss_dssp HHHHHHHTTCC-E--EEEEESSHHHHHHHHTTCCCSEEEECTTCGG-GCHH---HHHHHHHSSSTTTTCCEEEEETT
T ss_pred HHHHHHhcCCC-e--eEEEECCHHHHHHHhhcCCCCEEEEeCCCCC-CCHH---HHHHHHHhcccccCCCEEEEeCC
Confidence 33444445554 2 2333344555666777789999999865322 1111 12333333 246899988654
No 207
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=47.43 E-value=40 Score=19.58 Aligned_cols=49 Identities=6% Similarity=0.044 Sum_probs=28.7
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
.........++..+|++++...-.+ .... .....+-...++|++++-..
T Consensus 34 ~~~~~~~~~~~~~~dlvi~d~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~~ 82 (122)
T 1zgz_A 34 SGAGLREIMQNQSVDLILLDINLPD-ENGL---MLTRALRERSTVGIILVTGR 82 (122)
T ss_dssp SHHHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHTTCCCEEEEEESS
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCCC-CChH---HHHHHHHhcCCCCEEEEECC
Confidence 3455666777778999999865322 1111 12334433456888888543
No 208
>3r89_A Orotidine 5'-phosphate decarboxylase; PSI-biology, midwest center for structural genomics, MCSG, O 5-phosphate decarboxylase, lyase; 1.84A {Anaerococcus prevotii}
Probab=47.28 E-value=78 Score=22.90 Aligned_cols=93 Identities=9% Similarity=0.009 Sum_probs=55.3
Q ss_pred EEEEEEcCCh------------hHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHH
Q 044140 8 IMMVAIDDSN------------HSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVE 75 (166)
Q Consensus 8 ~Ilv~vd~s~------------~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (166)
.+.|.+|..+ ......+|...++. ..+. .+..+-+--. ....
T Consensus 19 ~LcvglDp~~~~lp~~~~~~~~~~~~l~~f~~~ivd-~l~~----~v~~~Kvg~~-------------------lf~~-- 72 (290)
T 3r89_A 19 FVCIGLDSSIDYIPENMKAGKSVSEALFSYNKEIID-QTYD----VCAIYKLQIA-------------------YYES-- 72 (290)
T ss_dssp SEEEECCCCGGGSCHHHHTTCCHHHHHHHHHHHHHH-HHTT----SCSEEEEEHH-------------------HHHT--
T ss_pred CEEEEECCChhhCchhhccccchHHHHHHHHHHHHH-HhCC----cceEEEecHH-------------------HHHh--
Confidence 4778888886 24566788888888 6654 5555544221 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhh-----hCCcEEEEc
Q 044140 76 LDTKKRAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVER-----FHPTILVLG 129 (166)
Q Consensus 76 ~~~~~~~~~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~-----~~~dliV~g 129 (166)
.--..-+.+++..+.+++.|.. +-.....+|+.+.+..+++. .++|++-+-
T Consensus 73 --~G~~~v~~L~~~i~~~~~~g~~-VflDlK~~DIpnTv~~~a~~~~~~~lg~D~vTvh 128 (290)
T 3r89_A 73 --YGIEGMIAYRDTLSYLREKDLL-SIGDVKRSDIAASAKMYAKAHFEGDFETDFITLN 128 (290)
T ss_dssp --THHHHHHHHHHHHHHHHHTTCC-EEEEEEECCCHHHHHHHHHHHHSGGGCCSEEEEC
T ss_pred --cCHHHHHHHHHHHHHHHHCCCe-EEEEecccCcHHHHHHHHHHHhccccCCCEEEEc
Confidence 0011112334445555666777 77777778888777766643 567888773
No 209
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=47.00 E-value=26 Score=23.68 Aligned_cols=60 Identities=7% Similarity=0.144 Sum_probs=33.3
Q ss_pred HhCCCCcccEEeecCCchhHHHHHHhhhC--CcEEEEcccCC---ccchhhhcccHHHHH-hhcCCccEEEEc
Q 044140 94 AKREVNDMPVHVMQGDPRNVMTEAVERFH--PTILVLGSHGY---GAVKRAVLGSVSDYS-AHHCSCTVMIVK 160 (166)
Q Consensus 94 ~~~~i~~~~~~v~~g~~~~~I~~~a~~~~--~dliV~g~~~~---~~~~~~~~gs~~~~l-~~~~~~pVlvv~ 160 (166)
.+.|++ +.. ...+ .+....++.. +|++++|+..- +.+-. -.|+..-.+ .++.++|++|+=
T Consensus 27 ~~~gI~-vtl--I~Ds---a~~~~m~~~~~~Vd~VivGAd~v~~nG~v~n-kiGT~~~Al~Ak~~~vPf~V~a 92 (191)
T 1w2w_B 27 VYDKIP-STL--ITDS---SIAYRIRTSPIPIKAAFVGADRIVRNGDTAN-KIGTLQLAVICKQFGIKFFVVA 92 (191)
T ss_dssp HHHTCC-BEE--BCGG---GHHHHHHHCSSCEEEEEECCSEECTTSCEEE-ETTHHHHHHHHHHHTCEEEEEC
T ss_pred HHcCCC-EEE--Eech---HHHHHHHhCCCCCCEEEECccEEecCCCEEe-cccHHHHHHHHHHcCCCEEEec
Confidence 445888 443 2222 2333344445 99999998752 22211 245544333 455689999973
No 210
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}
Probab=46.87 E-value=81 Score=22.95 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=32.3
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+.+++.++|-+++....+.....--+=..-..|...++.||++.-.
T Consensus 108 ~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~ 156 (315)
T 3si9_A 108 ELAKHAEKAGADAVLVVTPYYNRPNQRGLYTHFSSIAKAISIPIIIYNI 156 (315)
T ss_dssp HHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEeC
Confidence 4457788999999999876544332211112335677788999999753
No 211
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=46.73 E-value=67 Score=21.93 Aligned_cols=42 Identities=7% Similarity=0.177 Sum_probs=27.1
Q ss_pred HHHHHhCCCCcccEEeec--CC---chhHHHHHHhhhCCcEEEEcccC
Q 044140 90 TSICAKREVNDMPVHVMQ--GD---PRNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 90 ~~~~~~~~i~~~~~~v~~--g~---~~~~I~~~a~~~~~dliV~g~~~ 132 (166)
.+.+.+.|++ +...-.. .+ -..++.+..++.++|+||+...+
T Consensus 43 ~~~A~~~gIp-~~~~~~~~~~~r~~~~~~~~~~l~~~~~Dliv~agy~ 89 (212)
T 1jkx_A 43 LERARQAGIA-THTLIASAFDSREAYDRELIHEIDMYAPDVVVLAGFM 89 (212)
T ss_dssp HHHHHHTTCE-EEECCGGGCSSHHHHHHHHHHHHGGGCCSEEEESSCC
T ss_pred HHHHHHcCCc-EEEeCcccccchhhccHHHHHHHHhcCCCEEEEeChh
Confidence 3455677888 4331111 11 13578899999999999998653
No 212
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Probab=46.68 E-value=24 Score=24.09 Aligned_cols=72 Identities=15% Similarity=0.205 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEccc-CCccchhhhcccHHHHHhhcCCccEEE
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSH-GYGAVKRAVLGSVSDYSAHHCSCTVMI 158 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~-~~~~~~~~~~gs~~~~l~~~~~~pVlv 158 (166)
..++.+.+++++.|++++-+-...|..+....+..+ + .+|++..+ ++......-+..-..+-+.....+|+.
T Consensus 38 ~tl~la~era~e~~Ik~iVVASssG~TA~k~~e~~~--~-~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G~~V~t 110 (206)
T 1t57_A 38 RVLELVGERADQLGIRNFVVASVSGETALRLSEMVE--G-NIVSVTHHAGFREKGQLELEDEARDALLERGVNVYA 110 (206)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECSSSHHHHHHHTTCC--S-EEEEECCCTTSSSTTCCSSCHHHHHHHHHHTCEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHcc--C-CEEEEeCcCCCCCCCCCcCCHHHHHHHHhCCCEEEE
Confidence 345555666666677722222233555555555442 3 88888754 333333445566666666766666653
No 213
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=46.52 E-value=30 Score=22.45 Aligned_cols=41 Identities=5% Similarity=0.109 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCCcccEEeecCCchhHHHHHHhhh----CCcEEEEc
Q 044140 88 KATSICAKREVNDMPVHVMQGDPRNVMTEAVERF----HPTILVLG 129 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~----~~dliV~g 129 (166)
.+...+.+.|.. +.......|..+.|.+..++. ++|+||..
T Consensus 25 ~l~~~l~~~G~~-v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 69 (164)
T 2is8_A 25 AIREVLAGGPFE-VAAYELVPDEPPMIKKVLRLWADREGLDLILTN 69 (164)
T ss_dssp HHHHHHTTSSEE-EEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHHHHCCCe-EeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEc
Confidence 345566777887 665555555555555544432 79999884
No 214
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=46.42 E-value=49 Score=20.27 Aligned_cols=50 Identities=10% Similarity=-0.053 Sum_probs=24.5
Q ss_pred CchhHHHHHHhh-hCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCC
Q 044140 109 DPRNVMTEAVER-FHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~-~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 162 (166)
.......+..++ ..+|+|++...-.+. ... .....+-.. ..+||+++-..
T Consensus 36 ~~~~~a~~~l~~~~~~dlvi~d~~l~~~-~g~---~~~~~l~~~~~~~~ii~ls~~ 87 (154)
T 2qsj_A 36 ETVSDALAFLEADNTVDLILLDVNLPDA-EAI---DGLVRLKRFDPSNAVALISGE 87 (154)
T ss_dssp SSHHHHHHHHHTTCCCSEEEECC-------CH---HHHHHHHHHCTTSEEEEC---
T ss_pred cCHHHHHHHHhccCCCCEEEEeCCCCCC-chH---HHHHHHHHhCCCCeEEEEeCC
Confidence 344555566666 789999998653221 110 122333333 35888887543
No 215
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}
Probab=46.32 E-value=64 Score=23.17 Aligned_cols=47 Identities=6% Similarity=0.037 Sum_probs=31.1
Q ss_pred HHHHHHhhhCCcEEEEcccCCcc-ch-hhhcccHHHHHhhcC---CccEEEEc
Q 044140 113 VMTEAVERFHPTILVLGSHGYGA-VK-RAVLGSVSDYSAHHC---SCTVMIVK 160 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~-~~-~~~~gs~~~~l~~~~---~~pVlvv~ 160 (166)
.+.+.+++.++|-+++....+.. .. .-+. ..-..|...+ +.||++.-
T Consensus 89 ~la~~A~~~Gadavlv~~P~y~~~~s~~~l~-~~f~~va~a~p~~~lPiilYn 140 (294)
T 3b4u_A 89 DQSAEALNAGARNILLAPPSYFKNVSDDGLF-AWFSAVFSKIGKDARDILVYN 140 (294)
T ss_dssp HHHHHHHHTTCSEEEECCCCSSCSCCHHHHH-HHHHHHHHHHCTTCCCEEEEE
T ss_pred HHHHHHHhcCCCEEEEcCCcCCCCCCHHHHH-HHHHHHHHhcCCCCCcEEEEE
Confidence 34677888999999998765544 22 2222 2234577777 79999874
No 216
>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A
Probab=46.13 E-value=88 Score=23.14 Aligned_cols=85 Identities=8% Similarity=0.115 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccEEeec-C----Cc---------hhHHHHHHhhh-----CCcEEEEcccCCccch
Q 044140 77 DTKKRAQKVADKATSICAKREVNDMPVHVMQ-G----DP---------RNVMTEAVERF-----HPTILVLGSHGYGAVK 137 (166)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~i~~~~~~v~~-g----~~---------~~~I~~~a~~~-----~~dliV~g~~~~~~~~ 137 (166)
..+++..+.+.++.+.|.++|++ +-..++. + +. .+.|.+.++.. ++|++=+.-.+...+-
T Consensus 140 e~~~~q~~~l~rv~~ec~~~GiP-lllEil~y~~~~~~~~~~~~a~~~p~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v 218 (332)
T 3iv3_A 140 QVNVQKQAYIERIGSECQAEDIP-FFLEILTYDETISNNSSVEFAKVKVHKVNDAMKVFSAERFGIDVLKVEVPVNMVYV 218 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCC-EEEEEEECBTTBSCTTSHHHHTTHHHHHHHHHHHHTSGGGCCSEEEECCSSCGGGB
T ss_pred HHHHHHHHHHHHHHHHHHHcCCc-eEEEEeccCCCCCCCcchhhhccCHHHHHHHHHHHhhcCcCCcEEEEecCCChhhh
Confidence 34556667788999999999999 7665533 2 11 22355555544 9999988755432110
Q ss_pred hhhc-c----------cHHHHHhhcCCccEEEEcCC
Q 044140 138 RAVL-G----------SVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 138 ~~~~-g----------s~~~~l~~~~~~pVlvv~~~ 162 (166)
.-|- | ..-.++...++.|++++...
T Consensus 219 ~g~~~~~~~y~~~ea~~~f~~~~~a~~~P~v~lsgG 254 (332)
T 3iv3_A 219 EGFAEGEVVYSKEEAAQAFREQEASTDLPYIYLSAG 254 (332)
T ss_dssp TTTCSSCCCBCHHHHHHHHHHHHHTCSSCEEEECTT
T ss_pred cccccccccccHHHHHHHHHHHHhcCCCCEEEECCC
Confidence 0000 0 01244567889999887644
No 217
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=45.86 E-value=44 Score=19.66 Aligned_cols=51 Identities=6% Similarity=-0.125 Sum_probs=27.5
Q ss_pred chhHHHHHHhhh-CCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCCC
Q 044140 110 PRNVMTEAVERF-HPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMPK 163 (166)
Q Consensus 110 ~~~~I~~~a~~~-~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~~ 163 (166)
......+..++. .+|+|++...-.+....+ .....+-.. ..+||+++-...
T Consensus 37 ~~~~a~~~l~~~~~~dlvi~d~~l~~~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 89 (132)
T 2rdm_A 37 SGAKAIEMLKSGAAIDGVVTDIRFCQPPDGW---QVARVAREIDPNMPIVYISGHA 89 (132)
T ss_dssp SHHHHHHHHHTTCCCCEEEEESCCSSSSCHH---HHHHHHHHHCTTCCEEEEESSC
T ss_pred CHHHHHHHHHcCCCCCEEEEeeeCCCCCCHH---HHHHHHHhcCCCCCEEEEeCCc
Confidence 344555666665 899999986532211111 122333322 368998886543
No 218
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=45.67 E-value=29 Score=17.47 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 044140 70 VINLVELDTKKRAQKVADKATSICAKREV 98 (166)
Q Consensus 70 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 98 (166)
.+.+++.++++-.+++++.++..+.+.|.
T Consensus 16 IL~E~RkElqK~K~EIIeAi~~El~~~~~ 44 (45)
T 1use_A 16 LLEEVKKELQKVKEEIIEAFVQELRKRGS 44 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34455555666666666666666665553
No 219
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=45.60 E-value=82 Score=22.66 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=24.6
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEe
Q 044140 5 TKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHA 47 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v 47 (166)
..+||+|-+.++..+..++-.+.+--. .++ ++.+|-.
T Consensus 87 ~~~ri~vl~Sg~g~nl~~ll~~~~~g~--l~~----~i~~Vis 123 (287)
T 3nrb_A 87 DRKKVVIMVSKFDHCLGDLLYRHRLGE--LDM----EVVGIIS 123 (287)
T ss_dssp CCCEEEEEECSCCHHHHHHHHHHHHTS--SCC----EEEEEEE
T ss_pred CCcEEEEEEeCCCcCHHHHHHHHHCCC--CCe----EEEEEEe
Confidence 357888888888877777776655433 445 6665543
No 220
>3mcu_A Dipicolinate synthase, B chain; NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Bacillus cereus}
Probab=45.55 E-value=22 Score=24.41 Aligned_cols=37 Identities=5% Similarity=0.038 Sum_probs=28.6
Q ss_pred CCCEEEEEEcCChhHHH-HHHHHHHhcCCCCCCCCceEEEEEEe
Q 044140 5 TKPIMMVAIDDSNHSYY-ALEWALDYFFPPFAPNHTFQLVLIHA 47 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~-al~~a~~la~~~~~~~~~~~l~lv~v 47 (166)
..++|++++.|+-...+ +++..-.+.+ . +. +++++-.
T Consensus 4 ~~k~IllgiTGsiaayk~~~~ll~~L~~-~-g~----eV~vv~T 41 (207)
T 3mcu_A 4 KGKRIGFGFTGSHCTYEEVMPHLEKLIA-E-GA----EVRPVVS 41 (207)
T ss_dssp TTCEEEEEECSCGGGGTTSHHHHHHHHH-T-TC----EEEEEEC
T ss_pred CCCEEEEEEEChHHHHHHHHHHHHHHHh-C-CC----EEEEEEe
Confidence 45899999999987776 8888877766 4 66 8877743
No 221
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=45.47 E-value=53 Score=21.48 Aligned_cols=15 Identities=27% Similarity=-0.077 Sum_probs=11.6
Q ss_pred hhCCcEEEEcccCCc
Q 044140 120 RFHPTILVLGSHGYG 134 (166)
Q Consensus 120 ~~~~dliV~g~~~~~ 134 (166)
-..+|.||+|+.-+.
T Consensus 69 l~~aD~ii~gsP~y~ 83 (200)
T 2a5l_A 69 LKNCAGLALGSPTRF 83 (200)
T ss_dssp HHTCSEEEEEEECBT
T ss_pred HHHCCEEEEEcChhc
Confidence 348999999987544
No 222
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=45.46 E-value=48 Score=19.90 Aligned_cols=50 Identities=10% Similarity=0.181 Sum_probs=28.5
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc---CCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH---CSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~~ 162 (166)
......++..++..+|+|++...-.+ ... -....++-.. ..+|++++-..
T Consensus 33 ~~~~~a~~~~~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~~~ii~~s~~ 85 (140)
T 3n53_A 33 KNEKEALEQIDHHHPDLVILDMDIIG-ENS---PNLCLKLKRSKGLKNVPLILLFSS 85 (140)
T ss_dssp SSHHHHHHHHHHHCCSEEEEETTC----------CHHHHHHTSTTCTTCCEEEEECC
T ss_pred CCHHHHHHHHhcCCCCEEEEeCCCCC-CcH---HHHHHHHHcCcccCCCCEEEEecC
Confidence 34455566667789999999865221 111 1234444443 46899888654
No 223
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=45.34 E-value=62 Score=22.21 Aligned_cols=47 Identities=6% Similarity=0.072 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCCCcccEEeec-CCchhHHHHHHhhhCCcEEEEcccCCc
Q 044140 85 VADKATSICAKREVNDMPVHVMQ-GDPRNVMTEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~-g~~~~~I~~~a~~~~~dliV~g~~~~~ 134 (166)
+++.+.+.+.+.|.+ ++..-+. +.......+..+ .+|.||++..-..
T Consensus 48 L~~~~~~~l~~~g~e-v~~~dL~~~~Dv~~~~~~l~--~aD~iv~~~P~y~ 95 (218)
T 3rpe_A 48 LTNVAADFLRESGHQ-VKITTVDQGYDIESEIENYL--WADTIIYQMPAWW 95 (218)
T ss_dssp HHHHHHHHHHHTTCC-EEEEEGGGCCCHHHHHHHHH--HCSEEEEEEECBT
T ss_pred HHHHHHHHHhhCCCE-EEEEECCCccCHHHHHHHHH--hCCEEEEECChHh
Confidence 344455555556777 6655444 333344444444 8999999987543
No 224
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=45.17 E-value=47 Score=19.76 Aligned_cols=64 Identities=3% Similarity=-0.072 Sum_probs=32.2
Q ss_pred HHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc--CCccEEEEcCC
Q 044140 91 SICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH--CSCTVMIVKMP 162 (166)
Q Consensus 91 ~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~--~~~pVlvv~~~ 162 (166)
..+.+.|.. +. . ..+..+.+....+...+|+|++...-.+. ..+ .....+-.. ..+||+++-..
T Consensus 25 ~~L~~~g~~-v~--~-~~~~~~a~~~~~~~~~~dlvi~D~~l~~~-~g~---~~~~~l~~~~~~~~~ii~~s~~ 90 (136)
T 3hdv_A 25 LYLKSRGID-AV--G-ADGAEEARLYLHYQKRIGLMITDLRMQPE-SGL---DLIRTIRASERAALSIIVVSGD 90 (136)
T ss_dssp HHHHHTTCC-EE--E-ESSHHHHHHHHHHCTTEEEEEECSCCSSS-CHH---HHHHHHHTSTTTTCEEEEEESS
T ss_pred HHHHHcCce-EE--E-eCCHHHHHHHHHhCCCCcEEEEeccCCCC-CHH---HHHHHHHhcCCCCCCEEEEeCC
Confidence 334444655 32 2 33444444444444349999998653221 111 123444333 45788888654
No 225
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=44.64 E-value=52 Score=20.11 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=29.6
Q ss_pred CCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCCC
Q 044140 108 GDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMPK 163 (166)
Q Consensus 108 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~~ 163 (166)
-.......+..++..+|+|++...-.+. ..+ .....+-.. ..+||+++-...
T Consensus 47 ~~~~~~a~~~l~~~~~dlii~d~~l~~~-~g~---~~~~~l~~~~~~~~ii~~s~~~ 99 (152)
T 3eul_A 47 ADDGAAALELIKAHLPDVALLDYRMPGM-DGA---QVAAAVRSYELPTRVLLISAHD 99 (152)
T ss_dssp ESSHHHHHHHHHHHCCSEEEEETTCSSS-CHH---HHHHHHHHTTCSCEEEEEESCC
T ss_pred eCCHHHHHHHHHhcCCCEEEEeCCCCCC-CHH---HHHHHHHhcCCCCeEEEEEccC
Confidence 3445556667777899999998653221 111 123333333 357888876543
No 226
>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A
Probab=44.50 E-value=84 Score=22.49 Aligned_cols=49 Identities=8% Similarity=0.089 Sum_probs=31.4
Q ss_pred hHHHHHHhhhCCcEEEEcccCCccchh-hhcccHHHHHhhcCCccEEEEcC
Q 044140 112 NVMTEAVERFHPTILVLGSHGYGAVKR-AVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~~~~~~~~~-~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
-.+.+.+++.++|-+++....+..... -+. ..-+.|...++.||++...
T Consensus 87 i~la~~a~~~Gadavlv~~P~y~~~~~~~l~-~~f~~ia~a~~lPiilYn~ 136 (292)
T 3daq_A 87 IQASIQAKALGADAIMLITPYYNKTNQRGLV-KHFEAIADAVKLPVVLYNV 136 (292)
T ss_dssp HHHHHHHHHHTCSEEEEECCCSSCCCHHHHH-HHHHHHHHHHCSCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCCHHHHH-HHHHHHHHhCCCCEEEEec
Confidence 334577888999999888765443322 222 2334566677999998753
No 227
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=44.34 E-value=93 Score=22.92 Aligned_cols=46 Identities=7% Similarity=0.066 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCc
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~ 134 (166)
.+.+.+.+.+.|+. ++..-........+.+... .+|.||+|+...+
T Consensus 270 A~~i~~~l~~~g~~-v~~~~~~~~~~~~~~~~~~--~~d~ii~gsp~~~ 315 (402)
T 1e5d_A 270 ARVLAESFRDEGCT-VKLMWCKACHHSQIMSEIS--DAGAVIVGSPTHN 315 (402)
T ss_dssp HHHHHHHHHHTTCE-EEEEETTTSCHHHHHHHHH--TCSEEEEECCCBT
T ss_pred HHHHHHHHHhCCCe-EEEEECCCCCHHHHHHHHH--HCCEEEEECCccC
Confidence 34444444555665 5544333334445555445 8999999987544
No 228
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=44.22 E-value=75 Score=21.80 Aligned_cols=88 Identities=10% Similarity=0.170 Sum_probs=50.8
Q ss_pred CCCCCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHH
Q 044140 1 MGDQTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKK 80 (166)
Q Consensus 1 m~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
|+.. .+||.|-+.++.....++-.+.. . ..+. ++.+|-...+ ..
T Consensus 1 ~~~~-~~riavl~SG~Gsnl~all~~~~--~-~~~~----eI~~Vis~~~--~a-------------------------- 44 (215)
T 3tqr_A 1 MNRE-PLPIVVLISGNGTNLQAIIGAIQ--K-GLAI----EIRAVISNRA--DA-------------------------- 44 (215)
T ss_dssp ---C-CEEEEEEESSCCHHHHHHHHHHH--T-TCSE----EEEEEEESCT--TC--------------------------
T ss_pred CCCC-CcEEEEEEeCCcHHHHHHHHHHH--c-CCCC----EEEEEEeCCc--ch--------------------------
Confidence 4443 46899999998877777665543 2 1223 6655544211 00
Q ss_pred HHHHHHHHHHHHHHhCCCCcccEEeec--CC---chhHHHHHHhhhCCcEEEEcccC
Q 044140 81 RAQKVADKATSICAKREVNDMPVHVMQ--GD---PRNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 81 ~~~~~l~~~~~~~~~~~i~~~~~~v~~--g~---~~~~I~~~a~~~~~dliV~g~~~ 132 (166)
...+++.+.|++ +...-.. .+ ...++.+..++.++|+||+...+
T Consensus 45 -------~~~~~A~~~gIp-~~~~~~~~~~~r~~~d~~~~~~l~~~~~Dliv~agy~ 93 (215)
T 3tqr_A 45 -------YGLKRAQQADIP-THIIPHEEFPSRTDFESTLQKTIDHYDPKLIVLAGFM 93 (215)
T ss_dssp -------HHHHHHHHTTCC-EEECCGGGSSSHHHHHHHHHHHHHTTCCSEEEESSCC
T ss_pred -------HHHHHHHHcCCC-EEEeCccccCchhHhHHHHHHHHHhcCCCEEEEccch
Confidence 002455677888 4331111 11 13578899999999999998654
No 229
>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=44.20 E-value=87 Score=22.55 Aligned_cols=64 Identities=16% Similarity=0.077 Sum_probs=40.3
Q ss_pred CCCcccEEeecCCch--hHHHHHHhhhCCcEEEEcccCCccchh-hhcccHHHHHhhcCCccEEEEcCC
Q 044140 97 EVNDMPVHVMQGDPR--NVMTEAVERFHPTILVLGSHGYGAVKR-AVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 97 ~i~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~-~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
.++ +-..+-..+.. -.+.+.+++.++|-+++....+..... -+. ..-+.|...++.||++.--+
T Consensus 73 rvp-viaGvg~~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~-~~f~~va~a~~lPiilYn~P 139 (300)
T 3eb2_A 73 RVP-VVAGVASTSVADAVAQAKLYEKLGADGILAILEAYFPLKDAQIE-SYFRAIADAVEIPVVIYTNP 139 (300)
T ss_dssp SSC-BEEEEEESSHHHHHHHHHHHHHHTCSEEEEEECCSSCCCHHHHH-HHHHHHHHHCSSCEEEEECT
T ss_pred CCc-EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHH-HHHHHHHHHCCCCEEEEECc
Confidence 455 44444333443 345578889999999998775543322 222 23466778889999998644
No 230
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=44.16 E-value=62 Score=24.07 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCCCcccE-EeecCCc----hhHHHHHHhhhCCcEEE-Ecc
Q 044140 86 ADKATSICAKREVNDMPV-HVMQGDP----RNVMTEAVERFHPTILV-LGS 130 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~-~v~~g~~----~~~I~~~a~~~~~dliV-~g~ 130 (166)
.+++.+.+.+.|+. +.. .-.++++ .+.+.+.+++.++|+|| +|.
T Consensus 58 ~~~v~~~L~~~g~~-~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 107 (371)
T 1o2d_A 58 LDDLKKLLDETEIS-YEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGG 107 (371)
T ss_dssp HHHHHHHHHHTTCE-EEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEES
T ss_pred HHHHHHHHHHcCCe-EEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34455555556766 432 2123333 45666777888999988 653
No 231
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=43.46 E-value=50 Score=25.36 Aligned_cols=14 Identities=14% Similarity=0.119 Sum_probs=10.8
Q ss_pred cCCccEEEEcCCCC
Q 044140 151 HCSCTVMIVKMPKS 164 (166)
Q Consensus 151 ~~~~pVlvv~~~~~ 164 (166)
+..+||++|+....
T Consensus 137 ~~~ipV~~I~GNHD 150 (431)
T 3t1i_A 137 NISIPVFSIHGNHD 150 (431)
T ss_dssp CBCSCEEECCCSSS
T ss_pred cCCCcEEEEccCCC
Confidence 56899999987543
No 232
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=43.26 E-value=63 Score=20.71 Aligned_cols=51 Identities=4% Similarity=-0.075 Sum_probs=28.6
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh-cCCccEEEEcCCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH-HCSCTVMIVKMPK 163 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~~~ 163 (166)
......++..++..+|+|++.-.-.+ ...+ .....+-. ...+||+++-...
T Consensus 38 ~~~~~al~~~~~~~~dlvl~D~~lp~-~~g~---~~~~~l~~~~~~~~ii~lt~~~ 89 (184)
T 3rqi_A 38 HNKDEALKLAGAEKFEFITVXLHLGN-DSGL---SLIAPLCDLQPDARILVLTGYA 89 (184)
T ss_dssp CSHHHHHHHHTTSCCSEEEECSEETT-EESH---HHHHHHHHHCTTCEEEEEESSC
T ss_pred CCHHHHHHHHhhCCCCEEEEeccCCC-ccHH---HHHHHHHhcCCCCCEEEEeCCC
Confidence 33445556677789999999754211 1111 12233332 3468999886543
No 233
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=43.19 E-value=48 Score=23.08 Aligned_cols=47 Identities=4% Similarity=-0.062 Sum_probs=29.0
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
..++.+.+.++|.|.+|....-... . .-.+.+.+- ..+.|+++.|..
T Consensus 22 ~~~~~~~~~GtD~i~vGGs~gvt~~-~-~~~~v~~ik-~~~~Pvvlfp~~ 68 (228)
T 3vzx_A 22 EQLEILCESGTDAVIIGGSDGVTED-N-VLRMMSKVR-RFLVPCVLEVSA 68 (228)
T ss_dssp THHHHHHTSSCSEEEECCCSCCCHH-H-HHHHHHHHT-TSSSCEEEECSC
T ss_pred HHHHHHHHcCCCEEEECCcCCCCHH-H-HHHHHHHhh-ccCCCEEEeCCC
Confidence 3555566779999999975311111 1 123444443 388999999865
No 234
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=43.08 E-value=38 Score=22.43 Aligned_cols=42 Identities=7% Similarity=-0.082 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhh--CCcEEEEc
Q 044140 87 DKATSICAKREVNDMPVHVMQGDPRNVMTEAVERF--HPTILVLG 129 (166)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~--~~dliV~g 129 (166)
..+.+.+.+.|+. +......+|..+.|.+..++. .+|+||..
T Consensus 26 ~~l~~~L~~~G~~-v~~~~iv~Dd~~~I~~~l~~a~~~~DlVitt 69 (172)
T 3kbq_A 26 AFIGNFLTYHGYQ-VRRGFVVMDDLDEIGWAFRVALEVSDLVVSS 69 (172)
T ss_dssp HHHHHHHHHTTCE-EEEEEEECSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred HHHHHHHHHCCCE-EEEEEEeCCCHHHHHHHHHHHHhcCCEEEEc
Confidence 3455566778998 766665666655555544321 58999874
No 235
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=42.99 E-value=51 Score=21.59 Aligned_cols=41 Identities=5% Similarity=0.041 Sum_probs=24.9
Q ss_pred HHHHHHHhCCCCcccEEeecCCchhHHHHHHhh----hCCcEEEEc
Q 044140 88 KATSICAKREVNDMPVHVMQGDPRNVMTEAVER----FHPTILVLG 129 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~----~~~dliV~g 129 (166)
.+.+.+.+.|+. +......+|..+.|.+..++ .++|+||..
T Consensus 32 ~l~~~L~~~G~~-v~~~~iv~Dd~~~i~~~l~~a~~~~~~DlVitt 76 (172)
T 1mkz_A 32 YLRDSAQEAGHH-VVDKAIVKENRYAIRAQVSAWIASDDVQVVLIT 76 (172)
T ss_dssp HHHHHHHHTTCE-EEEEEEECSCHHHHHHHHHHHHHSSSCCEEEEE
T ss_pred HHHHHHHHCCCe-EeEEEEeCCCHHHHHHHHHHHHhcCCCCEEEeC
Confidence 344556667888 66555555555555544433 259999884
No 236
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=42.93 E-value=47 Score=23.36 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEccc
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSH 131 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~ 131 (166)
+.++++...+.|.. +...+--|=..+. +..+.+.++|.+|+|+.
T Consensus 182 I~~lr~~~~~~~~~-~~I~VDGGI~~~t-i~~~~~aGAD~~V~GSa 225 (246)
T 3inp_A 182 AKEISKWISSTDRD-ILLEIDGGVNPYN-IAEIAVCGVNAFVAGSA 225 (246)
T ss_dssp HHHHHHHHHHHTSC-CEEEEESSCCTTT-HHHHHTTTCCEEEESHH
T ss_pred HHHHHHHHHhcCCC-eeEEEECCcCHHH-HHHHHHcCCCEEEEehH
Confidence 44555555556766 6666666633344 44556679999999964
No 237
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=42.85 E-value=48 Score=19.23 Aligned_cols=50 Identities=6% Similarity=0.118 Sum_probs=28.5
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
.......+..++..+|++++...-.+. ... .....+-....+|++++-..
T Consensus 34 ~~~~~a~~~~~~~~~dlvi~D~~l~~~-~g~---~~~~~l~~~~~~~ii~~s~~ 83 (123)
T 1xhf_A 34 TDGAEMHQILSEYDINLVIMDINLPGK-NGL---LLARELREQANVALMFLTGR 83 (123)
T ss_dssp SSHHHHHHHHHHSCCSEEEECSSCSSS-CHH---HHHHHHHHHCCCEEEEEESC
T ss_pred CCHHHHHHHHhcCCCCEEEEcCCCCCC-CHH---HHHHHHHhCCCCcEEEEECC
Confidence 334555566677789999998653221 111 12333333357888888543
No 238
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=42.84 E-value=54 Score=19.80 Aligned_cols=50 Identities=8% Similarity=0.065 Sum_probs=29.5
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh---cCCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH---HCSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~~~ 162 (166)
.......+..++..+|+|++...-.+ ...+ .....+-. ...+||+++-..
T Consensus 39 ~~~~~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~pii~ls~~ 91 (147)
T 2zay_A 39 GNAIEAVPVAVKTHPHLIITEANMPK-ISGM---DLFNSLKKNPQTASIPVIALSGR 91 (147)
T ss_dssp SSHHHHHHHHHHHCCSEEEEESCCSS-SCHH---HHHHHHHTSTTTTTSCEEEEESS
T ss_pred CCHHHHHHHHHcCCCCEEEEcCCCCC-CCHH---HHHHHHHcCcccCCCCEEEEeCC
Confidence 34455566677779999999865322 1111 23344443 346899988654
No 239
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=42.71 E-value=36 Score=22.18 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=25.0
Q ss_pred HHHHHHHhCCCCcccEEeecCCchhHHHHHHhh---hCCcEEEEc
Q 044140 88 KATSICAKREVNDMPVHVMQGDPRNVMTEAVER---FHPTILVLG 129 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~---~~~dliV~g 129 (166)
.+...+++.|.. +.......|. +.|.+..++ .++|+||..
T Consensus 31 ~l~~~l~~~G~~-v~~~~iv~Dd-~~i~~al~~a~~~~~DlVitt 73 (164)
T 3pzy_A 31 IITEWLAQQGFS-SAQPEVVADG-SPVGEALRKAIDDDVDVILTS 73 (164)
T ss_dssp HHHHHHHHTTCE-ECCCEEECSS-HHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHCCCE-EEEEEEeCCH-HHHHHHHHHHHhCCCCEEEEC
Confidence 445566677887 5544444444 666665543 379999984
No 240
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=42.50 E-value=77 Score=23.59 Aligned_cols=45 Identities=13% Similarity=0.147 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCCCcccE-EeecCCc----hhHHHHHHhhhCCcEEE-Ecc
Q 044140 85 VADKATSICAKREVNDMPV-HVMQGDP----RNVMTEAVERFHPTILV-LGS 130 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~-~v~~g~~----~~~I~~~a~~~~~dliV-~g~ 130 (166)
..+++.+.+.+.|+. +.. .-.++++ .+.+.+.+++.++|+|| +|.
T Consensus 47 ~~~~v~~~L~~~g~~-~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 97 (386)
T 1rrm_A 47 VVAKVTDKMDAAGLA-WAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGG 97 (386)
T ss_dssp HHHHHHHHHHHTTCE-EEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHHHcCCe-EEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCC
Confidence 355666666667776 432 1122333 46677778889999988 654
No 241
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=42.42 E-value=69 Score=20.86 Aligned_cols=48 Identities=8% Similarity=0.098 Sum_probs=28.1
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.....++..++..+|+|++...-.+ ...+ .....+-...+.||+++-.
T Consensus 46 ~~~~al~~~~~~~~dlvi~D~~~p~-~~g~---~~~~~l~~~~~~pii~lt~ 93 (205)
T 1s8n_A 46 DGQEAVELAELHKPDLVIMDVKMPR-RDGI---DAASEIASKRIAPIVVLTA 93 (205)
T ss_dssp SHHHHHHHHHHHCCSEEEEESSCSS-SCHH---HHHHHHHHTTCSCEEEEEE
T ss_pred CHHHHHHHHhhcCCCEEEEeCCCCC-CChH---HHHHHHHhcCCCCEEEEec
Confidence 3445556667778999999865322 1111 2344444455678888743
No 242
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=42.40 E-value=35 Score=25.71 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCc----hhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDP----RNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~----~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
..+++.+.+.+ |+. +......+++ .+.+.+.+++.++|+||-= .|-+ ...++..+.....+|++.||
T Consensus 67 ~~~~v~~~L~~-g~~-~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIav-GGGs------~~D~AK~iA~~~~~p~i~IP 137 (387)
T 3uhj_A 67 LSERIGKSCGD-SLD-IRFERFGGECCTSEIERVRKVAIEHGSDILVGV-GGGK------TADTAKIVAIDTGARIVIAP 137 (387)
T ss_dssp HHHHC-------CCE-EEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEE-SSHH------HHHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHc-CCC-eEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEe-CCcH------HHHHHHHHHHhcCCCEEEec
Confidence 34566666777 777 6434445544 4556667788899986542 2111 12334444445689999998
Q ss_pred CC
Q 044140 161 MP 162 (166)
Q Consensus 161 ~~ 162 (166)
=.
T Consensus 138 TT 139 (387)
T 3uhj_A 138 TI 139 (387)
T ss_dssp SS
T ss_pred Cc
Confidence 53
No 243
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=42.30 E-value=53 Score=19.54 Aligned_cols=50 Identities=18% Similarity=0.215 Sum_probs=28.7
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 162 (166)
......++..++..+|+|++...-.+ .... .....+-.. ..+||+++-..
T Consensus 36 ~~~~~al~~~~~~~~dlvilD~~lp~-~~g~---~~~~~l~~~~~~~~ii~ls~~ 86 (133)
T 3b2n_A 36 DNGLDAMKLIEEYNPNVVILDIEMPG-MTGL---EVLAEIRKKHLNIKVIIVTTF 86 (133)
T ss_dssp SCHHHHHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHTTCSCEEEEEESC
T ss_pred CCHHHHHHHHhhcCCCEEEEecCCCC-CCHH---HHHHHHHHHCCCCcEEEEecC
Confidence 34455566667778999999865322 1111 123333333 35899888654
No 244
>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*
Probab=41.93 E-value=35 Score=25.00 Aligned_cols=51 Identities=12% Similarity=0.037 Sum_probs=35.0
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccc-hhhhcccHHHHHhhc-CCccEEEE
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAV-KRAVLGSVSDYSAHH-CSCTVMIV 159 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~-~~~~~gs~~~~l~~~-~~~pVlvv 159 (166)
+..++|++.|++.+..+|+-.+.+.... ...++.......... +++||.+-
T Consensus 28 e~~~avi~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValH 80 (307)
T 3n9r_A 28 EMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPHIPVALH 80 (307)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEEHHHHHHHCHHHHHHHHHHHHHHSTTSCEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEcChhhhhhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 7789999999999999999876542211 112344555555665 78998764
No 245
>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*
Probab=41.91 E-value=41 Score=24.60 Aligned_cols=50 Identities=16% Similarity=0.124 Sum_probs=36.2
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccc-hhhhcccHHHHHhhcCCccEEEE
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAV-KRAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~-~~~~~gs~~~~l~~~~~~pVlvv 159 (166)
+..++|++.|++.++.+|+-.+.+.... ...++......... .++||.+-
T Consensus 28 e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~~a~-~~VPValH 78 (305)
T 1rvg_A 28 EFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKE-ARVPVAVH 78 (305)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHH-CSSCEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECChhHHhhCCHHHHHHHHHHHHh-CCCcEEEE
Confidence 7789999999999999999877643221 12234556666777 88998764
No 246
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=41.91 E-value=49 Score=19.01 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=27.4
Q ss_pred hhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 111 RNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
.....+..++..+|++++...-.+ .... .....+-....+|++++-..
T Consensus 34 ~~~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~~ 81 (120)
T 2a9o_A 34 GREALEQFEAEQPDIIILDLMLPE-IDGL---EVAKTIRKTSSVPILMLSAK 81 (120)
T ss_dssp HHHHHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHHCCCCEEEEESC
T ss_pred HHHHHHHHHhCCCCEEEEeccCCC-CCHH---HHHHHHHhCCCCCEEEEecC
Confidence 344455666778999999865322 1111 12333333457898888543
No 247
>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*
Probab=41.86 E-value=1.1e+02 Score=22.87 Aligned_cols=105 Identities=11% Similarity=0.060 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 044140 17 NHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKATSICAKR 96 (166)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (166)
.+-..++++|..++. . ++ .+.-++++.+.+..+.+.+. . ++-+..+.+.+++.
T Consensus 117 es~e~a~~~a~~~k~-a-Ga----~~vr~q~fKprTs~~~f~gl------g---------------~egl~~l~~~~~e~ 169 (350)
T 1vr6_A 117 EGREMLMETAHFLSE-L-GV----KVLRGGAYKPRTSPYSFQGL------G---------------EKGLEYLREAADKY 169 (350)
T ss_dssp CCHHHHHHHHHHHHH-T-TC----CEEECBSCCCCCSTTSCCCC------T---------------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-c-CC----CeeeeeEEeCCCChHhhcCC------C---------------HHHHHHHHHHHHHc
Confidence 456677888877766 4 55 66555555544332222221 0 13355556667888
Q ss_pred CCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 97 EVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 97 ~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
|++ +-+.+..-...+ ++.+. +|++=+|++.-.... + -.++. .+++||++=..
T Consensus 170 Gl~-~~te~~d~~~~~----~l~~~-vd~lkIgAr~~~n~~--L----L~~va-~~~kPVilk~G 221 (350)
T 1vr6_A 170 GMY-VVTEALGEDDLP----KVAEY-ADIIQIGARNAQNFR--L----LSKAG-SYNKPVLLKRG 221 (350)
T ss_dssp TCE-EEEECSSGGGHH----HHHHH-CSEEEECGGGTTCHH--H----HHHHH-TTCSCEEEECC
T ss_pred CCc-EEEEeCCHHHHH----HHHHh-CCEEEECcccccCHH--H----HHHHH-ccCCcEEEcCC
Confidence 999 666554433333 33444 799999987543321 1 12222 46778776544
No 248
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=41.60 E-value=46 Score=24.56 Aligned_cols=69 Identities=10% Similarity=0.077 Sum_probs=43.0
Q ss_pred HHHHHhCCCCcccEEeec-CCchhHHHHHHhhhCCcEEEEcccCCccc-hhhhcccHHHHHhhc-CCccEEEE
Q 044140 90 TSICAKREVNDMPVHVMQ-GDPRNVMTEAVERFHPTILVLGSHGYGAV-KRAVLGSVSDYSAHH-CSCTVMIV 159 (166)
Q Consensus 90 ~~~~~~~~i~~~~~~v~~-g~~~~~I~~~a~~~~~dliV~g~~~~~~~-~~~~~gs~~~~l~~~-~~~pVlvv 159 (166)
.+.+.+.+.. +-.--.. -+..++|++.|++.++.+|+-.+.+.... ...++.......+.+ ..+||.+-
T Consensus 10 l~~A~~~~yA-V~AfNv~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~VPValH 81 (323)
T 2isw_A 10 LGEARKHKYG-VGAFNVNNMEQIQGIMKAVVQLKSPVILQCSRGALKYSDMIYLKKLCEAALEKHPDIPICIH 81 (323)
T ss_dssp HHHHHHTTCC-EEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTTTHHHHHHHHHHHHHCTTSCEEEE
T ss_pred HHHHHHCCce-EEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHhCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3344445555 4322223 37789999999999999999876642211 112334556666666 78998764
No 249
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A
Probab=41.49 E-value=49 Score=23.65 Aligned_cols=49 Identities=8% Similarity=-0.019 Sum_probs=31.9
Q ss_pred HHHHHHhhhCCcEEEEcccCCcc-chhhhcccHHHHHhhcCCccEEEEcC
Q 044140 113 VMTEAVERFHPTILVLGSHGYGA-VKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~-~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+.|++.++|-+++....+.. ...--+=..-..|...++.||++.-.
T Consensus 81 ~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~ 130 (286)
T 2r91_A 81 ALAKYAESRGAEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYNY 130 (286)
T ss_dssp HHHHHHHHTTCSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 34677888999999998775544 22211112234577788999998753
No 250
>1mvl_A PPC decarboxylase athal3A; flavoprotein, active site mutant C175S; HET: FMN; 2.00A {Arabidopsis thaliana} SCOP: c.34.1.1 PDB: 1mvn_A* 1e20_A*
Probab=41.04 E-value=41 Score=23.03 Aligned_cols=27 Identities=15% Similarity=0.027 Sum_probs=23.1
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHHhcC
Q 044140 5 TKPIMMVAIDDSNHSYYALEWALDYFF 31 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~al~~a~~la~ 31 (166)
..++|++++.++..+.++.+..-.+.+
T Consensus 18 ~~k~IllgvTGsiaa~k~~~ll~~L~~ 44 (209)
T 1mvl_A 18 RKPRVLLAASGSVAAIKFGNLCHCFTE 44 (209)
T ss_dssp -CCEEEEEECSSGGGGGHHHHHHHHHT
T ss_pred CCCEEEEEEeCcHHHHHHHHHHHHHhc
Confidence 458999999999999999998888866
No 251
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=40.94 E-value=57 Score=19.46 Aligned_cols=50 Identities=10% Similarity=0.082 Sum_probs=29.3
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh---cCCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH---HCSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~~~ 162 (166)
.......+..++..+|+|++...-.+ ...+ .....+-. ...+||+++-..
T Consensus 41 ~~~~~a~~~l~~~~~dlii~d~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 93 (143)
T 3cnb_A 41 YNPFDAGDLLHTVKPDVVMLDLMMVG-MDGF---SICHRIKSTPATANIIVIAMTGA 93 (143)
T ss_dssp CSHHHHHHHHHHTCCSEEEEETTCTT-SCHH---HHHHHHHTSTTTTTSEEEEEESS
T ss_pred CCHHHHHHHHHhcCCCEEEEecccCC-CcHH---HHHHHHHhCccccCCcEEEEeCC
Confidence 34455666677778999999865322 1111 23344433 346899888653
No 252
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=40.82 E-value=48 Score=19.77 Aligned_cols=47 Identities=11% Similarity=0.035 Sum_probs=25.9
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcC-CccEEEEcCCC
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHC-SCTVMIVKMPK 163 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~-~~pVlvv~~~~ 163 (166)
...+..++..+|+|++...-.+ ... -.....+-... .+|++++-...
T Consensus 50 ~a~~~l~~~~~dlvi~D~~l~~-~~g---~~~~~~l~~~~~~~~ii~~s~~~ 97 (135)
T 3snk_A 50 FLKGPPADTRPGIVILDLGGGD-LLG---KPGIVEARALWATVPLIAVSDEL 97 (135)
T ss_dssp GGGCCCTTCCCSEEEEEEETTG-GGG---STTHHHHHGGGTTCCEEEEESCC
T ss_pred HHHHHHhccCCCEEEEeCCCCC-chH---HHHHHHHHhhCCCCcEEEEeCCC
Confidence 3344456778999999865322 111 11233333333 68998886543
No 253
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=40.72 E-value=67 Score=20.28 Aligned_cols=62 Identities=6% Similarity=-0.037 Sum_probs=34.3
Q ss_pred HHhCCCCcccEEee--cC-C--chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEE
Q 044140 93 CAKREVNDMPVHVM--QG-D--PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVM 157 (166)
Q Consensus 93 ~~~~~i~~~~~~v~--~g-~--~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVl 157 (166)
+++.|++ ++.... +| + ....|.+..++..+||||--..+.... .--|....+..-..++|++
T Consensus 63 L~~~Gi~-v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~~~~~~~--~~d~~~iRR~Av~~~IP~~ 129 (143)
T 2yvq_A 63 LNANNVP-ATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLPNNNTKF--VHDNYVIRRTAVDSGIPLL 129 (143)
T ss_dssp HHHTTCC-CEEECCGGGC-----CBCHHHHHHTTSCCEEEECCCCCGGG--HHHHHHHHHHHHHTTCCEE
T ss_pred HHHcCCe-EEEEEeccCCCcccccccHHHHHHCCCceEEEECCCCCCcC--CccHHHHHHHHHHhCCCeE
Confidence 3457888 665332 12 2 004699999999999999876542111 1113333444444456654
No 254
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=40.70 E-value=58 Score=19.50 Aligned_cols=51 Identities=8% Similarity=-0.016 Sum_probs=29.2
Q ss_pred CchhHHHHHHhh-hCCcEEEEcccCCccchhhhcccHHHHHhh---cCCccEEEEcCC
Q 044140 109 DPRNVMTEAVER-FHPTILVLGSHGYGAVKRAVLGSVSDYSAH---HCSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~-~~~dliV~g~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~~~ 162 (166)
.......+..++ ..+|+|++...-.+....+ .....+-. ...+||+++-..
T Consensus 36 ~~~~~a~~~l~~~~~~dlvi~D~~l~~~~~g~---~~~~~l~~~~~~~~~~ii~ls~~ 90 (140)
T 3lua_A 36 ENLKKFYSIFKDLDSITLIIMDIAFPVEKEGL---EVLSAIRNNSRTANTPVIIATKS 90 (140)
T ss_dssp CSHHHHHTTTTTCCCCSEEEECSCSSSHHHHH---HHHHHHHHSGGGTTCCEEEEESC
T ss_pred CCHHHHHHHHhcCCCCcEEEEeCCCCCCCcHH---HHHHHHHhCcccCCCCEEEEeCC
Confidence 344555666677 8999999986533122211 12333333 356899888654
No 255
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=40.66 E-value=53 Score=23.00 Aligned_cols=47 Identities=4% Similarity=-0.045 Sum_probs=29.2
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
..++.+.+.++|.|.+|....-... . .-.+.+.+= ..+.|+++.|..
T Consensus 27 ~~l~~~~~~GtDaI~vGgs~gvt~~-~-~~~~v~~ik-~~~~Piil~p~~ 73 (235)
T 3w01_A 27 DDLDAICMSQTDAIMIGGTDDVTED-N-VIHLMSKIR-RYPLPLVLEISN 73 (235)
T ss_dssp HHHHHHHTSSCSEEEECCSSCCCHH-H-HHHHHHHHT-TSCSCEEEECCC
T ss_pred HHHHHHHHcCCCEEEECCcCCcCHH-H-HHHHHHHhc-CcCCCEEEecCC
Confidence 4555566789999999975321111 1 123444443 488999999874
No 256
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=40.51 E-value=93 Score=21.80 Aligned_cols=70 Identities=13% Similarity=0.023 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCchh--HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPRN--VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.++.+.+.+.+.|+. +.+....++... .+++.....++|-||+.......... . -+.+....+||+++-.
T Consensus 20 ~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~-~~~~~~~~iPvV~~~~ 91 (313)
T 3m9w_A 20 DRDIFVKKAESLGAK-VFVQSANGNEETQMSQIENMINRGVDVLVIIPYNGQVLSN-----V-VKEAKQEGIKVLAYDR 91 (313)
T ss_dssp HHHHHHHHHHHTSCE-EEEEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHH-----H-HHHHHTTTCEEEEESS
T ss_pred HHHHHHHHHHHcCCE-EEEECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHH-----H-HHHHHHCCCeEEEECC
Confidence 344455555666777 555444444433 45566666789999887554332211 1 2335667899998854
No 257
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=40.32 E-value=70 Score=21.78 Aligned_cols=20 Identities=20% Similarity=0.280 Sum_probs=12.3
Q ss_pred hhHHHHHHhhhCCcEEEEcc
Q 044140 111 RNVMTEAVERFHPTILVLGS 130 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~ 130 (166)
.+.+++.+++.++|+||+..
T Consensus 21 ~~~~l~~~~~~~~D~vi~~G 40 (260)
T 2yvt_A 21 LPKLKGVIAEKQPDILVVVG 40 (260)
T ss_dssp HHHHHHHHHHHCCSEEEEES
T ss_pred HHHHHHHHHhcCCCEEEECC
Confidence 34555666556777777653
No 258
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=40.11 E-value=59 Score=19.47 Aligned_cols=49 Identities=4% Similarity=-0.050 Sum_probs=27.9
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
.....++..++..+|+|++...-.+ ...+ .....+-....+|++++-..
T Consensus 36 ~~~~al~~~~~~~~dlvllD~~l~~-~~g~---~l~~~l~~~~~~~ii~ls~~ 84 (136)
T 2qzj_A 36 NCEEAIGKIFSNKYDLIFLEIILSD-GDGW---TLCKKIRNVTTCPIVYMTYI 84 (136)
T ss_dssp SHHHHHHHHHHCCCSEEEEESEETT-EEHH---HHHHHHHTTCCCCEEEEESC
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHccCCCCCEEEEEcC
Confidence 3445556667778999999854221 1111 12334433347899888543
No 259
>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1
Probab=40.08 E-value=1.3e+02 Score=23.53 Aligned_cols=36 Identities=6% Similarity=0.024 Sum_probs=27.9
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecC
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPN 50 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~ 50 (166)
+++++++.+.-+|.-++..+.+.. +. +++++|+...
T Consensus 228 ~~vvvalSGGvDSsv~a~ll~~a~----G~----~v~av~v~~g 263 (525)
T 1gpm_A 228 DKVILGLSGGVDSSVTAMLLHRAI----GK----NLTCVFVDNG 263 (525)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHH----GG----GEEEEEEECS
T ss_pred cceEEEecCCCCHHHHHHHHHHHh----CC----CEEEEEEeCC
Confidence 689999999999988887765532 34 8889998653
No 260
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=40.02 E-value=61 Score=19.57 Aligned_cols=49 Identities=2% Similarity=-0.046 Sum_probs=26.2
Q ss_pred CchhHHHHHHhhh-CCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 109 DPRNVMTEAVERF-HPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 109 ~~~~~I~~~a~~~-~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
......++..++. .+|+|++...-.+ ... -.+...+-...++|++++-.
T Consensus 46 ~~~~~al~~l~~~~~~dlvilD~~l~~-~~g---~~~~~~lr~~~~~~iiil~~ 95 (145)
T 3kyj_B 46 ANGQEALDKLAAQPNVDLILLDIEMPV-MDG---MEFLRHAKLKTRAKICMLSS 95 (145)
T ss_dssp SSHHHHHHHHHHCTTCCEEEECTTSCC-CTT---CHHHHHHHHHCCCEEC-CBS
T ss_pred CCHHHHHHHHhcCCCCCEEEEeCCCCC-CCH---HHHHHHHHhcCCCCeEEEEE
Confidence 3344445555556 8999999865222 111 12334444455678877754
No 261
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A
Probab=39.99 E-value=50 Score=23.66 Aligned_cols=48 Identities=13% Similarity=0.007 Sum_probs=31.4
Q ss_pred HHHHHHhhhCCcEEEEcccCCcc-chhhhcccHHHHHhhcCCccEEEEc
Q 044140 113 VMTEAVERFHPTILVLGSHGYGA-VKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~-~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.+.+.+++.++|-+++....+.. ...--+=..-..|...++.||++.-
T Consensus 82 ~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn 130 (288)
T 2nuw_A 82 ELVKFSNEMDILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYN 130 (288)
T ss_dssp HHHHHHHTSCCSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEE
T ss_pred HHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 34677888999999988765543 2221111223457778899999875
No 262
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=39.88 E-value=59 Score=25.36 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=15.8
Q ss_pred hHHHHHHhhhCCcEEEEccc
Q 044140 112 NVMTEAVERFHPTILVLGSH 131 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~~ 131 (166)
+.+++.+.+.++|+||++.-
T Consensus 105 ~~lv~~~~~~~~D~VliaGD 124 (472)
T 4fbk_A 105 NEILEIARERDVDMILLGGD 124 (472)
T ss_dssp HHHHHHHHHTTCSEEEECSC
T ss_pred HHHHHHHHhcCCCEEEEcCc
Confidence 56788888889998888643
No 263
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=39.58 E-value=50 Score=22.11 Aligned_cols=42 Identities=10% Similarity=-0.059 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCCcccEEeecCCchhHHHHHHhh---hCCcEEEEc
Q 044140 87 DKATSICAKREVNDMPVHVMQGDPRNVMTEAVER---FHPTILVLG 129 (166)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~---~~~dliV~g 129 (166)
..+...+++.|.. +.......|..+.|.+..++ .++|+||..
T Consensus 52 ~~L~~~L~~~G~~-v~~~~iv~Dd~~~I~~al~~a~~~~~DlVItt 96 (185)
T 3rfq_A 52 PLVTELLTEAGFV-VDGVVAVEADEVDIRNALNTAVIGGVDLVVSV 96 (185)
T ss_dssp HHHHHHHHHTTEE-EEEEEEECSCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHCCCE-EEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 3445566777888 66555555555555554433 479999984
No 264
>3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum}
Probab=39.57 E-value=81 Score=22.24 Aligned_cols=33 Identities=6% Similarity=0.158 Sum_probs=21.8
Q ss_pred CCCCcccEEeecCCchhHHHHHHh----hhCCcEEEEc
Q 044140 96 REVNDMPVHVMQGDPRNVMTEAVE----RFHPTILVLG 129 (166)
Q Consensus 96 ~~i~~~~~~v~~g~~~~~I~~~a~----~~~~dliV~g 129 (166)
.|.. +-.....+|..+....+++ +.++|++-+-
T Consensus 75 ~g~~-VflDlK~~DI~nTv~~~a~~~~~~lg~d~vTvh 111 (255)
T 3qw3_A 75 AGIP-VVLDAKRGDIADTADAYATSAFKHLNAHAITAS 111 (255)
T ss_dssp TTCC-BEEEEEECCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred CCCe-EEEEeecCCcHHHHHHHHHHHHHHcCCCEEEEc
Confidence 4666 6677777777777655553 3457887773
No 265
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=39.54 E-value=86 Score=21.66 Aligned_cols=43 Identities=7% Similarity=0.101 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEc-cc
Q 044140 87 DKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLG-SH 131 (166)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g-~~ 131 (166)
+++++...+.|.. +...+--|=..+.+... .+.++|.+|+| +.
T Consensus 155 ~~lr~~~~~~~~~-~~I~VdGGI~~~~~~~~-~~aGAd~~V~G~sa 198 (231)
T 3ctl_A 155 AELKAWREREGLE-YEIEVDGSCNQATYEKL-MAAGADVFIVGTSG 198 (231)
T ss_dssp HHHHHHHHHHTCC-CEEEEESCCSTTTHHHH-HHHTCCEEEECTTT
T ss_pred HHHHHHHhccCCC-ceEEEECCcCHHHHHHH-HHcCCCEEEEccHH
Confidence 3444555545666 66666555334444444 44599999999 54
No 266
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=39.38 E-value=65 Score=19.68 Aligned_cols=50 Identities=12% Similarity=0.099 Sum_probs=28.4
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 162 (166)
.......+..++..+|+|++...-.+. ... .....+-.. ..+||+++-..
T Consensus 38 ~~~~~a~~~l~~~~~dlii~D~~l~~~-~g~---~~~~~l~~~~~~~~ii~ls~~ 88 (153)
T 3cz5_A 38 ADAGEAYRLYRETTPDIVVMDLTLPGP-GGI---EATRHIRQWDGAARILIFTMH 88 (153)
T ss_dssp SSHHHHHHHHHTTCCSEEEECSCCSSS-CHH---HHHHHHHHHCTTCCEEEEESC
T ss_pred CCHHHHHHHHhcCCCCEEEEecCCCCC-CHH---HHHHHHHHhCCCCeEEEEECC
Confidence 344555666777789999998653221 111 123333333 35888888643
No 267
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=39.33 E-value=62 Score=19.43 Aligned_cols=50 Identities=16% Similarity=0.241 Sum_probs=28.1
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 162 (166)
......++..++..+|+|++...-.+. ... .....+-.. ..+||+++-..
T Consensus 35 ~~~~~a~~~l~~~~~dlvllD~~l~~~-~g~---~l~~~l~~~~~~~~ii~ls~~ 85 (137)
T 3cfy_A 35 ETGRDAIQFIERSKPQLIILDLKLPDM-SGE---DVLDWINQNDIPTSVIIATAH 85 (137)
T ss_dssp SSHHHHHHHHHHHCCSEEEECSBCSSS-BHH---HHHHHHHHTTCCCEEEEEESS
T ss_pred CCHHHHHHHHHhcCCCEEEEecCCCCC-CHH---HHHHHHHhcCCCCCEEEEEec
Confidence 334555666677799999998653221 111 123333332 45788888543
No 268
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=39.20 E-value=90 Score=21.31 Aligned_cols=67 Identities=4% Similarity=-0.024 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCch--hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHH-HhhcCCccEEEEc
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDPR--NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDY-SAHHCSCTVMIVK 160 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~-l~~~~~~pVlvv~ 160 (166)
..++.+.+.+.+.|.. +......++.. ..+++.....++|-||+... . ...-. .+....+||+++-
T Consensus 25 ~~~~gi~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~-----~-----~~~~~~~l~~~~iPvV~~~ 93 (277)
T 3e61_A 25 LIARGVEDVALAHGYQ-VLIGNSDNDIKKAQGYLATFVSHNCTGMISTAF-----N-----ENIIENTLTDHHIPFVFID 93 (277)
T ss_dssp HHHHHHHHHHHHTTCC-EEEEECTTCHHHHHHHHHHHHHTTCSEEEECGG-----G-----HHHHHHHHHHC-CCEEEGG
T ss_pred HHHHHHHHHHHHCCCE-EEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecC-----C-----hHHHHHHHHcCCCCEEEEe
Confidence 3455556666777887 65544444443 34566666779999998651 1 11123 4556789998875
Q ss_pred C
Q 044140 161 M 161 (166)
Q Consensus 161 ~ 161 (166)
.
T Consensus 94 ~ 94 (277)
T 3e61_A 94 R 94 (277)
T ss_dssp G
T ss_pred c
Confidence 4
No 269
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*
Probab=39.19 E-value=50 Score=23.71 Aligned_cols=48 Identities=8% Similarity=-0.029 Sum_probs=31.2
Q ss_pred HHHHHHhhhCCcEEEEcccCCcc-chhhhcccHHHHHhhcCCccEEEEc
Q 044140 113 VMTEAVERFHPTILVLGSHGYGA-VKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~-~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.+.+.+++.++|-+++....+.. ...--+=..-..|...++.||++.-
T Consensus 82 ~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn 130 (293)
T 1w3i_A 82 RLAKLSKDFDIVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYN 130 (293)
T ss_dssp HHHHHGGGSCCSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEE
Confidence 34677888999999888765544 2221111223467778899999875
No 270
>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}
Probab=39.10 E-value=1.1e+02 Score=22.30 Aligned_cols=30 Identities=23% Similarity=-0.035 Sum_probs=17.8
Q ss_pred CCCCCCCEEEEEEcCCh-hHHHHHHHHHHhc
Q 044140 1 MGDQTKPIMMVAIDDSN-HSYYALEWALDYF 30 (166)
Q Consensus 1 m~~~~~~~Ilv~vd~s~-~s~~al~~a~~la 30 (166)
|+.++.|++|=.-|.+. +-...++.|..+.
T Consensus 1 ~~~~~~rhlls~~dls~~ei~~ll~~A~~lk 31 (309)
T 4f2g_A 1 MTAKTIRHYLQFKDFSLEDYEYVLERTGILK 31 (309)
T ss_dssp -----CCCBSSGGGSCHHHHHHHHHHHHHHH
T ss_pred CCCCcCCCcCchhhCCHHHHHHHHHHHHHHH
Confidence 66666788888888885 4556677776653
No 271
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=39.08 E-value=39 Score=23.42 Aligned_cols=43 Identities=7% Similarity=0.084 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEccc
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSH 131 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~ 131 (166)
+.++.+.+++.|.. +-+.+-.+++.+.+..+.. .+|+|.+.+-
T Consensus 95 ~~~~i~~i~~~G~k-~gv~lnp~tp~~~~~~~l~--~~D~VlvmsV 137 (231)
T 3ctl_A 95 AFRLIDEIRRHDMK-VGLILNPETPVEAMKYYIH--KADKITVMTV 137 (231)
T ss_dssp HHHHHHHHHHTTCE-EEEEECTTCCGGGGTTTGG--GCSEEEEESS
T ss_pred HHHHHHHHHHcCCe-EEEEEECCCcHHHHHHHHh--cCCEEEEeee
Confidence 45566666777887 6666655688888877776 7898866443
No 272
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=38.33 E-value=64 Score=19.33 Aligned_cols=48 Identities=4% Similarity=-0.150 Sum_probs=25.5
Q ss_pred hHHHHHHh--hhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCCC
Q 044140 112 NVMTEAVE--RFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMPK 163 (166)
Q Consensus 112 ~~I~~~a~--~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~~ 163 (166)
....+... ...+|+|++...-.+. ..+ .....+-.. ..+||+++-...
T Consensus 37 ~~a~~~~~~~~~~~dlvi~d~~l~~~-~g~---~~~~~l~~~~~~~~ii~ls~~~ 87 (143)
T 3jte_A 37 TEGLRIFTENCNSIDVVITDMKMPKL-SGM---DILREIKKITPHMAVIILTGHG 87 (143)
T ss_dssp HHHHHHHHHTTTTCCEEEEESCCSSS-CHH---HHHHHHHHHCTTCEEEEEECTT
T ss_pred HHHHHHHHhCCCCCCEEEEeCCCCCC-cHH---HHHHHHHHhCCCCeEEEEECCC
Confidence 33444444 5689999998653221 111 122333333 358888886543
No 273
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=38.29 E-value=1.1e+02 Score=22.15 Aligned_cols=34 Identities=9% Similarity=0.058 Sum_probs=22.7
Q ss_pred CCCcccEEeecCC---chhHHHHHHhhhCCcEEEEccc
Q 044140 97 EVNDMPVHVMQGD---PRNVMTEAVERFHPTILVLGSH 131 (166)
Q Consensus 97 ~i~~~~~~v~~g~---~~~~I~~~a~~~~~dliV~g~~ 131 (166)
+++ +-+.+..+- ....+.+.+++.++|.|++..+
T Consensus 211 ~~P-v~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~ 247 (336)
T 1f76_A 211 YVP-IAVKIAPDLSEEELIQVADSLVRHNIDGVIATNT 247 (336)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred cCc-eEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 456 555544331 2456678888899999998754
No 274
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=38.27 E-value=59 Score=23.31 Aligned_cols=22 Identities=14% Similarity=-0.117 Sum_probs=16.0
Q ss_pred hhHHHHHHhhhCCcEEEEcccCCc
Q 044140 111 RNVMTEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~~~~~ 134 (166)
...+.+... .+|.||+++.-+.
T Consensus 114 v~~l~e~I~--~ADgiV~aSP~Yn 135 (279)
T 2fzv_A 114 VKELRALSE--WSEGQVWCSPERH 135 (279)
T ss_dssp HHHHHHHHH--HCSEEEEEEEEET
T ss_pred HHHHHHHHH--HCCeEEEEcCccc
Confidence 455666666 8999999987544
No 275
>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A
Probab=38.27 E-value=93 Score=21.16 Aligned_cols=81 Identities=9% Similarity=0.053 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 044140 19 SYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKATSICAKREV 98 (166)
Q Consensus 19 s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i 98 (166)
+...+..++++|. ..++ ...++|.-.... ... . ..+...+...+.+..+.+.+++.|+
T Consensus 74 ~~~~~~~~i~~A~-~lGa----~~v~~~~g~~~~-------------~~~---~-~~~~~~~~~~~~l~~l~~~a~~~gv 131 (254)
T 3ayv_A 74 TLRRLLFGLDRAA-ELGA----DRAVFHSGIPHG-------------RTP---E-EALERALPLAEALGLVVRRARTLGV 131 (254)
T ss_dssp HHHHHHHHHHHHH-HTTC----SEEEEECCCCTT-------------CCH---H-HHHHTHHHHHHHTHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHH-HhCC----CEEEECCCCCcc-------------ccc---c-cHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 3466788889999 8888 766676432111 000 0 1122233444555666677777788
Q ss_pred CcccEEeecCCchhHHHHHHhhhC
Q 044140 99 NDMPVHVMQGDPRNVMTEAVERFH 122 (166)
Q Consensus 99 ~~~~~~v~~g~~~~~I~~~a~~~~ 122 (166)
. +-.+-..+.....+.+..++.+
T Consensus 132 ~-l~lEn~~~~~~~~~~~l~~~v~ 154 (254)
T 3ayv_A 132 R-LLLENSHEPHPEALRPVLEAHA 154 (254)
T ss_dssp E-EEEECSSCSSGGGTHHHHHHHT
T ss_pred E-EEEcCCCCCCHHHHHHHHHhcC
Confidence 8 6555544544455566666544
No 276
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project, S2F, structural genomics, unknown function; 2.20A {Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Probab=38.23 E-value=44 Score=23.40 Aligned_cols=52 Identities=13% Similarity=0.317 Sum_probs=29.5
Q ss_pred hhHHHHHHhhhCCcEEEEcccCCcc------------------chhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 111 RNVMTEAVERFHPTILVLGSHGYGA------------------VKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~~~~~~------------------~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
+...++.+.+.++|+.|-|--++.. ..++++....+.|-.+..+++.+++.+
T Consensus 175 G~~~~~~a~~~gaD~~iTGd~~~h~~~~a~e~gi~~i~~GH~~tE~~~~~~l~~~L~~~~~~~v~~~~~~ 244 (247)
T 1nmo_A 175 GQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHATERGGIRALSEWLNENTDLDVTFIDIP 244 (247)
T ss_dssp CGGGHHHHHHHCCSEEEESCCCHHHHHHHHHTTCEEEECCHHHHTSHHHHHHHHHHHHHSSCEEEECCCC
T ss_pred cHHHHHHHHHcCCCEEEEcCccHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 4455677777788888887443311 112223334555555567777777653
No 277
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=38.05 E-value=1.1e+02 Score=21.82 Aligned_cols=69 Identities=6% Similarity=0.007 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCchh--HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPRN--VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+..+.+.+.+.|.. +......++... ..++.....++|-||+....... .....++...++||+++-.
T Consensus 81 ~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~~~~~~~~iPvV~~~~ 151 (338)
T 3dbi_A 81 LLFHAARMAEEKGRQ-LLLADGKHSAEEERQAIQYLLDLRCDAIMIYPRFLSV-------DEIDDIIDAHSQPIMVLNR 151 (338)
T ss_dssp HHHHHHHHHHHTTCE-EEEEECTTSHHHHHHHHHHHHHTTCSEEEECCSSSCH-------HHHHHHHHHCSSCEEEESS
T ss_pred HHHHHHHHHHHCCCE-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCCh-------HHHHHHHHcCCCCEEEEcC
Confidence 344555566667777 554443344432 34566666788888886432211 1233456667788887743
No 278
>2hy5_B Intracellular sulfur oxidation protein DSRF; DSRE, DSRF, sulfur, structural genomics, PSI, protein initiative, berkeley structural genomics center, BSGC, TRAN; 1.72A {Allochromatium vinosum} SCOP: c.114.1.1 PDB: 2hyb_B
Probab=37.98 E-value=64 Score=20.24 Aligned_cols=42 Identities=14% Similarity=0.025 Sum_probs=26.8
Q ss_pred CCCCCCCEEEEEEcCChh----HHHHHHHHHHhcCCCCCCCCceEEEEEEeec
Q 044140 1 MGDQTKPIMMVAIDDSNH----SYYALEWALDYFFPPFAPNHTFQLVLIHARP 49 (166)
Q Consensus 1 m~~~~~~~Ilv~vd~s~~----s~~al~~a~~la~~~~~~~~~~~l~lv~v~~ 49 (166)
|+.. ++++++.+..+|+ +..++++|..++. . +. .+.++...+
T Consensus 1 ~~~~-Mkk~~ivv~~~P~g~~~~~~al~~a~a~~a-~-~~----~v~Vff~~D 46 (136)
T 2hy5_B 1 MSEV-VKKFMYLNRKAPYGTIYAWEALEVVLIGAA-F-DQ----DVCVLFLDD 46 (136)
T ss_dssp -----CCEEEEEECSCTTTSSHHHHHHHHHHHHGG-G-CC----EEEEEECGG
T ss_pred Cccc-hhEEEEEEeCCCCCcHHHHHHHHHHHHHHh-C-CC----CEEEEEEhH
Confidence 5443 4779999988765 5678888887776 3 44 776665543
No 279
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=37.91 E-value=90 Score=20.93 Aligned_cols=48 Identities=13% Similarity=0.192 Sum_probs=27.7
Q ss_pred hhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 111 RNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
.....+..++..+|+|++...-.+ ...+ .....+-....+||+++-..
T Consensus 38 ~~~al~~l~~~~~dlvilD~~l~~-~~g~---~~~~~lr~~~~~~ii~lt~~ 85 (238)
T 2gwr_A 38 GTQALTAVRELRPDLVLLDLMLPG-MNGI---DVCRVLRADSGVPIVMLTAK 85 (238)
T ss_dssp GGGHHHHHHHHCCSEEEEESSCSS-SCHH---HHHHHHHTTCCCCEEEEEET
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhCCCCcEEEEeCC
Confidence 344455666778999999865322 1111 12344444447899988543
No 280
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=37.89 E-value=59 Score=18.80 Aligned_cols=48 Identities=8% Similarity=0.081 Sum_probs=26.5
Q ss_pred hhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc---CCccEEEEcCC
Q 044140 111 RNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH---CSCTVMIVKMP 162 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~~ 162 (166)
........++..+|+|++...-.+ .... .....+-.. ..+|++++-..
T Consensus 34 ~~~a~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 84 (124)
T 1mb3_A 34 GLSALSIARENKPDLILMDIQLPE-ISGL---EVTKWLKEDDDLAHIPVVAVTAF 84 (124)
T ss_dssp HHHHHHHHHHHCCSEEEEESBCSS-SBHH---HHHHHHHHSTTTTTSCEEEEC--
T ss_pred HHHHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHcCccccCCcEEEEECC
Confidence 444556667778999999865322 1111 123334332 36899988543
No 281
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=37.75 E-value=1.1e+02 Score=23.11 Aligned_cols=42 Identities=14% Similarity=0.256 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCCcccEEeecC---Cc----hhHHHHHHhhhCCcEEE-Ecc
Q 044140 86 ADKATSICAKREVNDMPVHVMQG---DP----RNVMTEAVERFHPTILV-LGS 130 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g---~~----~~~I~~~a~~~~~dliV-~g~ 130 (166)
.+++.+.+.+.|+. +. +..| ++ .+.+.+.+++.++|+|| +|.
T Consensus 61 ~~~v~~~L~~~g~~-~~--~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGG 110 (407)
T 1vlj_A 61 YDQVVDSLKKHGIE-WV--EVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGG 110 (407)
T ss_dssp HHHHHHHHHHTTCE-EE--EECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHcCCe-EE--EecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 45555666666776 43 3333 32 45666778889999988 654
No 282
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=37.60 E-value=88 Score=22.59 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=10.1
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCc
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDP 110 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~ 110 (166)
++++.+.+.+.+. ...+..||.
T Consensus 29 ~~~~~~~~~~~~~---D~vl~~GDl 50 (333)
T 1ii7_A 29 FKNALEIAVQENV---DFILIAGDL 50 (333)
T ss_dssp HHHHHHHHHHTTC---SEEEEESCS
T ss_pred HHHHHHHHHhcCC---CEEEECCCc
Confidence 3444444444333 355555543
No 283
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=37.30 E-value=61 Score=18.83 Aligned_cols=49 Identities=8% Similarity=0.096 Sum_probs=27.1
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc---CCccEEEEcC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH---CSCTVMIVKM 161 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~ 161 (166)
.......+..++..+|+|++...-.+. ... .....+-.. ..+|++++-.
T Consensus 33 ~~~~~a~~~~~~~~~dlvi~D~~l~~~-~g~---~~~~~l~~~~~~~~~~ii~~s~ 84 (127)
T 2jba_A 33 EDYDSAVNQLNEPWPDLILLAWMLPGG-SGI---QFIKHLRRESMTRDIPVVMLTA 84 (127)
T ss_dssp CSHHHHHTTCSSSCCSEEEEESEETTE-EHH---HHHHHHHTSTTTTTSCEEEEEE
T ss_pred CCHHHHHHHHhccCCCEEEEecCCCCC-CHH---HHHHHHHhCcccCCCCEEEEeC
Confidence 334455566677789999998542221 111 123333333 4588888753
No 284
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Probab=37.19 E-value=45 Score=24.98 Aligned_cols=75 Identities=19% Similarity=0.204 Sum_probs=45.5
Q ss_pred HHHHHHHhCCCCcccEEeec-CCchhHHHHHHhhhCCcEEEEcccCCcc------chh------hh-----cccHHHHHh
Q 044140 88 KATSICAKREVNDMPVHVMQ-GDPRNVMTEAVERFHPTILVLGSHGYGA------VKR------AV-----LGSVSDYSA 149 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v~~-g~~~~~I~~~a~~~~~dliV~g~~~~~~------~~~------~~-----~gs~~~~l~ 149 (166)
++.+.+++.+.. +-.--.. -+..+++++.|++.++.+|+-.+.+... +.. .+ +......+.
T Consensus 19 ~ll~~A~~~~yA-VpAfNv~n~e~~~Avl~AAee~~sPvIlq~s~g~~~~~~g~~~~~~~~~~~~i~ga~~~~~~v~~~A 97 (358)
T 1dos_A 19 KVFQVAKENNFA-LPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMA 97 (358)
T ss_dssp HHHHHHHHTTCC-EEEEECCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCce-EEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhHHHHhcCCCccccchhhhHHHhHHHHHHHHHHHH
Confidence 333444555655 4332233 3788999999999999999987664211 111 11 234455667
Q ss_pred hcCCccEEEEcCCC
Q 044140 150 HHCSCTVMIVKMPK 163 (166)
Q Consensus 150 ~~~~~pVlvv~~~~ 163 (166)
.+.++||.+-=++.
T Consensus 98 ~~~~VPVaLHlDHg 111 (358)
T 1dos_A 98 EHYGVPVILHTDHC 111 (358)
T ss_dssp HHHTCEEEEEECCC
T ss_pred HHCCCCEEEECCCC
Confidence 77889987754443
No 285
>2bln_A Protein YFBG; transferase, formyltransferase, L-ARA4N biosynthesis, methyltransferase; HET: FON U5P; 1.2A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 1yrw_A
Probab=37.15 E-value=1.1e+02 Score=22.08 Aligned_cols=41 Identities=10% Similarity=0.151 Sum_probs=26.4
Q ss_pred HHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccC
Q 044140 89 ATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 89 ~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~ 132 (166)
+.+.+.+.|++ +.. ...-...++.+..++.++|++|+...+
T Consensus 45 v~~~A~~~gIp-v~~--~~~~~~~~~~~~l~~~~~Dliv~~~y~ 85 (305)
T 2bln_A 45 VARLAAERGIP-VYA--PDNVNHPLWVERIAQLSPDVIFSFYYR 85 (305)
T ss_dssp HHHHHHHHTCC-EEC--CSCCCSHHHHHHHHHTCCSEEEEESCC
T ss_pred HHHHHHHcCCC-EEC--CCcCCcHHHHHHHHhcCCCEEEEeccc
Confidence 34455666888 332 222223467888889999999997654
No 286
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=37.11 E-value=58 Score=21.51 Aligned_cols=13 Identities=15% Similarity=0.232 Sum_probs=10.5
Q ss_pred CCcEEEEcccCCc
Q 044140 122 HPTILVLGSHGYG 134 (166)
Q Consensus 122 ~~dliV~g~~~~~ 134 (166)
.+|.||+|+.-+.
T Consensus 69 ~aD~ii~~sP~y~ 81 (197)
T 2vzf_A 69 NADGLIVATPIYK 81 (197)
T ss_dssp HCSEEEEEEECBT
T ss_pred HCCEEEEEeCccC
Confidence 8999999987544
No 287
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=36.99 E-value=67 Score=20.34 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=23.7
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCCC
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMPK 163 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 163 (166)
...+.-++.+.+.-++|....+.......-.+-++..+.++.||+++=++.
T Consensus 74 ~m~~~~k~v~~~e~iVGWY~s~~~~~~~d~~i~~~~~~~~~~pV~L~~Dp~ 124 (141)
T 4e0q_A 74 KKEQQYKQVFSDLDFIGWYTTGDNPTADDIKIQRQIAAINECPIMLQLNPL 124 (141)
T ss_dssp HHHHHHHHHSTTCEEEEEEEEEC-------CHHHHHHHTTCCCEEEEESCS
T ss_pred HHHHHHHHhCCCccEEEEEeCCCCCCcchHHHHHHHHHHCCCCEEEEECCC
Confidence 334444555666667765533221111111233445556677777775443
No 288
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=36.93 E-value=1e+02 Score=21.30 Aligned_cols=66 Identities=15% Similarity=0.101 Sum_probs=38.4
Q ss_pred HHHHHHHHHhCCCCcccEEeecC--Cch--hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEE
Q 044140 86 ADKATSICAKREVNDMPVHVMQG--DPR--NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g--~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 159 (166)
++.+.+.+.+.|+. +.+....+ ++. ...++.....++|-||+.......... ..+. +. ..+||+++
T Consensus 24 ~~g~~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~-----~~~~-~~-~~iPvV~~ 93 (304)
T 3o1i_D 24 NYGMVSEAEKQGVN-LRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPHAYEH-----NLKS-WV-GNTPVFAT 93 (304)
T ss_dssp HHHHHHHHHHHTCE-EEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTT-----THHH-HT-TTSCEEEC
T ss_pred HHHHHHHHHHcCCe-EEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHH-----HHHH-Hc-CCCCEEEe
Confidence 34444455556777 55544444 432 345566666799999987554332221 2233 34 78999988
No 289
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=36.90 E-value=29 Score=22.85 Aligned_cols=20 Identities=15% Similarity=0.353 Sum_probs=13.7
Q ss_pred HHHHHHhhhCCcEEEEcccCCc
Q 044140 113 VMTEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~ 134 (166)
.+.+... .+|.||+|+.-+.
T Consensus 65 ~~~~~l~--~aD~ii~~sP~y~ 84 (193)
T 1rtt_A 65 RFREQIR--AADALLFATPEYN 84 (193)
T ss_dssp HHHHHHH--HCSEEEEECCEET
T ss_pred HHHHHHH--hCCEEEEEccccc
Confidence 3444444 8999999987543
No 290
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5
Probab=36.89 E-value=66 Score=23.91 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=34.3
Q ss_pred HHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccC---CccchhhhcccHHH-HHhhcCCccEEEEc
Q 044140 93 CAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHG---YGAVKRAVLGSVSD-YSAHHCSCTVMIVK 160 (166)
Q Consensus 93 ~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~---~~~~~~~~~gs~~~-~l~~~~~~pVlvv~ 160 (166)
+.+.|++ +.. ... ..+....++..+|.+++|+.. .+..-. -.|+..- -+.++.++|++|+=
T Consensus 204 L~~~GI~-vtl--I~D---sa~~~~M~~~~Vd~VivGAd~V~aNG~v~N-KiGT~~lAl~Ak~~~vPfyV~a 268 (347)
T 1t9k_A 204 LMKDGIE-VYV--ITD---NMAGWLMKRGLIDAVVVGADRIALNGDTAN-KIGTYSLAVLAKRNNIPFYVAA 268 (347)
T ss_dssp HHTTTCE-EEE--ECG---GGHHHHHHTTCCSEEEECCSEEETTSCEEE-ETTHHHHHHHHHHTTCCEEEEC
T ss_pred HHhCCCC-EEE--Eeh---hHHHHHhhcCCCCEEEECccEEecCCCEEe-cccHHHHHHHHHHcCCCEEEec
Confidence 3455777 433 222 223334444579999999875 222221 2355433 34556789999983
No 291
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=36.83 E-value=74 Score=19.61 Aligned_cols=50 Identities=6% Similarity=-0.031 Sum_probs=27.3
Q ss_pred CchhHHHHHHhhh--CCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCC
Q 044140 109 DPRNVMTEAVERF--HPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~--~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 162 (166)
......++..++. .+|+|++...-.+ ...+ ....++-.. ..+||+++-..
T Consensus 68 ~~~~~al~~l~~~~~~~dliilD~~l~~-~~g~---~~~~~lr~~~~~~~ii~ls~~ 120 (157)
T 3hzh_A 68 ADGEEAVIKYKNHYPNIDIVTLXITMPK-MDGI---TCLSNIMEFDKNARVIMISAL 120 (157)
T ss_dssp SSHHHHHHHHHHHGGGCCEEEECSSCSS-SCHH---HHHHHHHHHCTTCCEEEEESC
T ss_pred CCHHHHHHHHHhcCCCCCEEEEeccCCC-ccHH---HHHHHHHhhCCCCcEEEEecc
Confidence 3444555555666 7999999865322 1111 122333332 35888888654
No 292
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=36.76 E-value=1.2e+02 Score=22.18 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCc
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~ 134 (166)
..+.+.+.+.+.|+. ++..-........+..... .+|.||+|+...+
T Consensus 268 lA~~ia~~l~~~g~~-v~~~~~~~~~~~~~~~~~~--~~d~ii~g~p~y~ 314 (398)
T 1ycg_A 268 MAHALMDGLVAGGCE-VKLFKLSVSDRNDVIKEIL--DARAVLVGSPTIN 314 (398)
T ss_dssp HHHHHHHHHHHTTCE-EEEEEGGGSCHHHHHHHHH--HCSEEEEECCCBT
T ss_pred HHHHHHHHHHhcCCe-EEEEECCCCCHHHHHHHHH--HCCEEEEECCccC
Confidence 344445555555666 5544333333444544444 7999999987544
No 293
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=36.67 E-value=70 Score=19.28 Aligned_cols=50 Identities=12% Similarity=0.113 Sum_probs=27.0
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh-cCCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH-HCSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~~ 162 (166)
......++..++..+|+|++...-.+ .... .....+-. ...+|++++-..
T Consensus 36 ~~~~~al~~~~~~~~dlvllD~~lp~-~~g~---~l~~~l~~~~~~~~ii~ls~~ 86 (141)
T 3cu5_A 36 DDGINAIQIALKHPPNVLLTDVRMPR-MDGI---ELVDNILKLYPDCSVIFMSGY 86 (141)
T ss_dssp SSHHHHHHHHTTSCCSEEEEESCCSS-SCHH---HHHHHHHHHCTTCEEEEECCS
T ss_pred ccHHHHHHHHhcCCCCEEEEeCCCCC-CCHH---HHHHHHHhhCCCCcEEEEeCC
Confidence 34455556667778999998754222 1111 12233332 235788888543
No 294
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=36.63 E-value=67 Score=19.06 Aligned_cols=50 Identities=6% Similarity=-0.046 Sum_probs=28.2
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCCC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMPK 163 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~~ 163 (166)
......+..++..+|+|++...-.+. ..+ ....++-.. ..+|++++-...
T Consensus 39 ~~~~a~~~l~~~~~dlvi~d~~l~~~-~g~---~~~~~l~~~~~~~~ii~~s~~~ 89 (137)
T 3hdg_A 39 DGEEGERLFGLHAPDVIITDIRMPKL-GGL---EMLDRIKAGGAKPYVIVISAFS 89 (137)
T ss_dssp SHHHHHHHHHHHCCSEEEECSSCSSS-CHH---HHHHHHHHTTCCCEEEECCCCC
T ss_pred CHHHHHHHHhccCCCEEEEeCCCCCC-CHH---HHHHHHHhcCCCCcEEEEecCc
Confidence 34555666677799999998653221 111 123333333 357888876543
No 295
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=36.55 E-value=98 Score=23.05 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=25.7
Q ss_pred HHHHHHHHhCCCCcccE-EeecCCc----hhHHHHHHhhhCCcEEE-Ecc
Q 044140 87 DKATSICAKREVNDMPV-HVMQGDP----RNVMTEAVERFHPTILV-LGS 130 (166)
Q Consensus 87 ~~~~~~~~~~~i~~~~~-~v~~g~~----~~~I~~~a~~~~~dliV-~g~ 130 (166)
+++.+.+.+.|+. +.. .-.++++ .+.+.+.+++.++|+|| +|.
T Consensus 53 ~~v~~~L~~~g~~-~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGG 101 (387)
T 3bfj_A 53 DKTLHYLREAGIE-VAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGG 101 (387)
T ss_dssp HHHHHHHHHTTCE-EEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred HHHHHHHHHcCCe-EEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4455555666776 422 1122333 46677778889999988 553
No 296
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=36.31 E-value=72 Score=21.28 Aligned_cols=39 Identities=8% Similarity=-0.027 Sum_probs=26.8
Q ss_pred CCCEEEEEEcCC---hhHHHHHHHHHHhcCCCCCCCCceEEEEEEeec
Q 044140 5 TKPIMMVAIDDS---NHSYYALEWALDYFFPPFAPNHTFQLVLIHARP 49 (166)
Q Consensus 5 ~~~~Ilv~vd~s---~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~ 49 (166)
|.|+|+|.+... ..+.++++++.+++. . +. ++.++...+
T Consensus 1 M~k~I~vi~GS~R~~S~~~~la~~~~~~~~-~-~~----~~~~idl~d 42 (190)
T 3u7r_A 1 MVKTVAVMVGSLRKDSLNHKLMKVLQKLAE-G-RL----EFHLLHIGD 42 (190)
T ss_dssp -CEEEEEEESCCSTTCHHHHHHHHHHHHHT-T-TE----EEEECCGGG
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHHHhcc-C-CC----EEEEEeccc
Confidence 357888776442 346788899988887 5 45 888887654
No 297
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=36.24 E-value=70 Score=19.14 Aligned_cols=49 Identities=6% Similarity=0.092 Sum_probs=27.7
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh---cCCccEEEEcCC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH---HCSCTVMIVKMP 162 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~~~ 162 (166)
...+.++..++..+|+|++...-.+ ...+ .....+-. ...+|++++-..
T Consensus 36 ~~~~al~~~~~~~~dlvl~D~~lp~-~~g~---~~~~~lr~~~~~~~~pii~~t~~ 87 (136)
T 3t6k_A 36 SGEEALQQIYKNLPDALICDVLLPG-IDGY---TLCKRVRQHPLTKTLPILMLTAQ 87 (136)
T ss_dssp SHHHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHSGGGTTCCEEEEECT
T ss_pred CHHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHcCCCcCCccEEEEecC
Confidence 3455566677789999999865322 1111 12233322 235788888654
No 298
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=35.88 E-value=44 Score=19.34 Aligned_cols=49 Identities=14% Similarity=0.122 Sum_probs=27.3
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKM 161 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~ 161 (166)
.......+..++..+|++++...-.+ ... -...+.+-.. ..+|++++-.
T Consensus 34 ~~~~~~~~~~~~~~~dlvi~d~~~~~-~~g---~~~~~~l~~~~~~~~ii~~s~ 83 (124)
T 1dc7_A 34 ENGNEVLAALASKTPDVLLSDIRMPG-MDG---LALLKQIKQRHPMLPVIIMTA 83 (124)
T ss_dssp CCTTHHHHHSSSCCCSCEEECSCSSH-HHH---CSTHHHHHHHCTTSCCCCBCC
T ss_pred CCHHHHHHHHhcCCCCEEEEeeecCC-CCH---HHHHHHHHhhCCCCCEEEEec
Confidence 33455566667778999999865322 111 1223333332 3578887754
No 299
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=35.86 E-value=1e+02 Score=21.04 Aligned_cols=68 Identities=16% Similarity=0.043 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCch--hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDPR--NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
..+..+.+.+.+.|.. +......++.. ..+++.....++|-||+..... . ..-..+...++||+++-.
T Consensus 24 ~~~~gi~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~---~------~~~~~l~~~~iPvV~i~~ 93 (276)
T 3jy6_A 24 ELFKGISSILESRGYI-GVLFDANADIEREKTLLRAIGSRGFDGLILQSFSN---P------QTVQEILHQQMPVVSVDR 93 (276)
T ss_dssp HHHHHHHHHHHTTTCE-EEEEECTTCHHHHHHHHHHHHTTTCSEEEEESSCC---H------HHHHHHHTTSSCEEEESC
T ss_pred HHHHHHHHHHHHCCCE-EEEEeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc---H------HHHHHHHHCCCCEEEEec
Confidence 4445556666777777 55544444443 3456666677899888865432 1 112345567899988854
No 300
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=35.81 E-value=72 Score=21.27 Aligned_cols=40 Identities=5% Similarity=0.018 Sum_probs=23.7
Q ss_pred HHHHHHh---CCCCcccEEeecCCchhHHHHHHhh----hCCcEEEEc
Q 044140 89 ATSICAK---REVNDMPVHVMQGDPRNVMTEAVER----FHPTILVLG 129 (166)
Q Consensus 89 ~~~~~~~---~~i~~~~~~v~~g~~~~~I~~~a~~----~~~dliV~g 129 (166)
+...+.+ .|.. +......+|..+.|.+..++ .++|+||..
T Consensus 39 L~~~L~~~~~~G~~-v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVItt 85 (189)
T 1jlj_A 39 LKDLVQDPSLLGGT-ISAYKIVPDEIEEIKETLIDWCDEKELNLILTT 85 (189)
T ss_dssp HHHHHHCTTTTCCE-EEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred HHHHHhchhcCCcE-EEEEEEeCCCHHHHHHHHHHHhhcCCCCEEEEc
Confidence 3444454 5777 65555555555555554443 379999884
No 301
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=35.76 E-value=75 Score=19.35 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCc
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~ 134 (166)
..+.+.+.+.+.|+. ++..-....... .-.++|.||+|+..+.
T Consensus 15 iA~~ia~~l~~~g~~-v~~~~~~~~~~~------~l~~~d~iiig~pty~ 57 (138)
T 5nul_A 15 MAELIAKGIIESGKD-VNTINVSDVNID------ELLNEDILILGCSAMT 57 (138)
T ss_dssp HHHHHHHHHHHTTCC-CEEEEGGGCCHH------HHTTCSEEEEEECCBT
T ss_pred HHHHHHHHHHHCCCe-EEEEEhhhCCHH------HHhhCCEEEEEcCccC
Confidence 334445555666777 665433322111 2248999999987543
No 302
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=35.69 E-value=47 Score=23.16 Aligned_cols=50 Identities=8% Similarity=0.048 Sum_probs=26.1
Q ss_pred hHHHHHHh--hhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 112 NVMTEAVE--RFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 112 ~~I~~~a~--~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
+.|.+..+ ...+|++|+-.-+. .......+.....+++...+||++|-+.
T Consensus 119 ~~I~~~~~~l~~~~D~vlIEGagG-l~~pl~~~~~~adlA~~l~~pVILV~~~ 170 (242)
T 3qxc_A 119 DNLTQRLHNFTKTYDLVIVEGAGG-LCVPITLEENMLDFALKLKAKMLLISHD 170 (242)
T ss_dssp HHHHHHHHHGGGTCSEEEEECCSC-TTCBSSSSCBHHHHHHHHTCEEEEEECC
T ss_pred HHHHHHHHHHHhcCCEEEEECCCC-ccccccccchHHHHHHHcCCCEEEEEcC
Confidence 34444433 24788888854321 1111111233456777778888877543
No 303
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=35.66 E-value=1.1e+02 Score=21.14 Aligned_cols=70 Identities=10% Similarity=-0.060 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCch--hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDPR--NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
..+..+.+.+.+.|+. +.+....++.. ..+++.....++|-||+...... ...-..+....+||+++-.
T Consensus 25 ~~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--------~~~~~~~~~~~iPvV~~~~ 95 (291)
T 3egc_A 25 EVASGVESEARHKGYS-VLLANTAEDIVREREAVGQFFERRVDGLILAPSEGE--------HDYLRTELPKTFPIVAVNR 95 (291)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCSSC--------CHHHHHSSCTTSCEEEESS
T ss_pred HHHHHHHHHHHHCCCE-EEEEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCCC--------hHHHHHhhccCCCEEEEec
Confidence 3445555566667877 65544444443 34566667779999988654321 1122345667899988854
Q ss_pred C
Q 044140 162 P 162 (166)
Q Consensus 162 ~ 162 (166)
.
T Consensus 96 ~ 96 (291)
T 3egc_A 96 E 96 (291)
T ss_dssp C
T ss_pred c
Confidence 3
No 304
>3zxs_A Cryptochrome B, rscryb; lyase, cryPro, lumazine, iron-sulfur-cluster; HET: FAD DLZ; 2.70A {Rhodobacter sphaeroides}
Probab=35.62 E-value=1.3e+02 Score=23.72 Aligned_cols=71 Identities=7% Similarity=-0.096 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhCCCCcccEEee-----cCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccE
Q 044140 82 AQKVADKATSICAKREVNDMPVHVM-----QGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTV 156 (166)
Q Consensus 82 ~~~~l~~~~~~~~~~~i~~~~~~v~-----~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pV 156 (166)
.-..+..+.+.+++.|.. +.+.-. .|++.+.|.+.+++.+++-|.+-....-.. ++-++..+|+|
T Consensus 65 l~saMr~fa~~L~~~G~~-v~y~~~~~~~~~g~~~~~L~~l~~~~~~~~v~~~~P~e~r~---------~~~l~~~gi~v 134 (522)
T 3zxs_A 65 ILAAMRKFARRLQERGFR-VAYSRLDDPDTGPSIGAELLRRAAETGAREAVATRPGDWRL---------IEALEAMPLPV 134 (522)
T ss_dssp HHHHHHHHHHHHHHTTCC-EEEECTTCTTCCSSHHHHHHHHHHHHTCCCEEEECCSCHHH---------HHHHHHSSSCE
T ss_pred HHHHHHHHHHHHHhCCCe-EEEEeccCccccCCHHHHHHHHHHHcCCCEEEEeCcchHHH---------HHHHHHcCCcE
Confidence 344566777777888988 555432 278899999999999999999874332222 22233448888
Q ss_pred EEEcCC
Q 044140 157 MIVKMP 162 (166)
Q Consensus 157 lvv~~~ 162 (166)
-+++..
T Consensus 135 ~~~~~~ 140 (522)
T 3zxs_A 135 RFLPDD 140 (522)
T ss_dssp EEECCC
T ss_pred EEeCCC
Confidence 888764
No 305
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=35.61 E-value=80 Score=19.68 Aligned_cols=49 Identities=8% Similarity=0.101 Sum_probs=29.6
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
......++..++..+|+|++...-.+ ...+ .....+-...++|++++-.
T Consensus 58 ~~~~~al~~l~~~~~dlvilD~~l~~-~~g~---~l~~~lr~~~~~~ii~~s~ 106 (164)
T 3t8y_A 58 KDGLEAVEKAIELKPDVITMDIEMPN-LNGI---EALKLIMKKAPTRVIMVSS 106 (164)
T ss_dssp SSHHHHHHHHHHHCCSEEEECSSCSS-SCHH---HHHHHHHHHSCCEEEEEES
T ss_pred CCHHHHHHHhccCCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCceEEEEec
Confidence 44455566667778999999865322 1111 2334455555688888864
No 306
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=35.48 E-value=43 Score=21.80 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=20.6
Q ss_pred HHhCCCCcccEEeecCCchhHHHHHHhhh---CCcEEEEc
Q 044140 93 CAKREVNDMPVHVMQGDPRNVMTEAVERF---HPTILVLG 129 (166)
Q Consensus 93 ~~~~~i~~~~~~v~~g~~~~~I~~~a~~~---~~dliV~g 129 (166)
+.+.|+. +......+|..+.|.+..++. ++|+||..
T Consensus 38 l~~~G~~-v~~~~iv~Dd~~~I~~~l~~a~~~~~DlVitt 76 (167)
T 2g2c_A 38 LQDYSYE-LISEVVVPEGYDTVVEAIATALKQGARFIITA 76 (167)
T ss_dssp ---CEEE-EEEEEEECSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHCCCE-EeEEEEeCCCHHHHHHHHHHHHhCCCCEEEEC
Confidence 5667877 655555565555555554432 59999884
No 307
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=35.34 E-value=95 Score=20.41 Aligned_cols=38 Identities=3% Similarity=-0.066 Sum_probs=21.5
Q ss_pred CCcEEEEcccCCccchhhhcccHHHHHhh-----cCCccEEEEcCCC
Q 044140 122 HPTILVLGSHGYGAVKRAVLGSVSDYSAH-----HCSCTVMIVKMPK 163 (166)
Q Consensus 122 ~~dliV~g~~~~~~~~~~~~gs~~~~l~~-----~~~~pVlvv~~~~ 163 (166)
.+|+|++...-.+ ...+ .+...+-. ...+||+++-...
T Consensus 119 ~~dlillD~~lp~-~~G~---el~~~lr~~~~~~~~~~piI~ls~~~ 161 (206)
T 3mm4_A 119 PFDYIFMDCQMPE-MDGY---EATREIRKVEKSYGVRTPIIAVSGHD 161 (206)
T ss_dssp SCSEEEEESCCSS-SCHH---HHHHHHHHHHHTTTCCCCEEEEESSC
T ss_pred CCCEEEEcCCCCC-CCHH---HHHHHHHhhhhhcCCCCcEEEEECCC
Confidence 8999999855221 1111 12233332 3678999987543
No 308
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=35.31 E-value=96 Score=20.50 Aligned_cols=48 Identities=17% Similarity=0.153 Sum_probs=28.0
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
......+..++..+|+|++.-.-.+ ...+ .....+-....+||+++-.
T Consensus 36 ~~~~al~~~~~~~~dlvllD~~l~~-~~g~---~~~~~l~~~~~~~ii~lt~ 83 (230)
T 2oqr_A 36 DGPAALAEFDRAGADIVLLDLMLPG-MSGT---DVCKQLRARSSVPVIMVTA 83 (230)
T ss_dssp SHHHHHHHHHHHCCSEEEEESSCSS-SCHH---HHHHHHHHHCSCSEEEEEC
T ss_pred CHHHHHHHHhccCCCEEEEECCCCC-CCHH---HHHHHHHcCCCCCEEEEeC
Confidence 3444556667778999999865322 1111 1233443345789998854
No 309
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=35.21 E-value=30 Score=25.83 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=7.7
Q ss_pred EEEEEEeecCC
Q 044140 41 QLVLIHARPNP 51 (166)
Q Consensus 41 ~l~lv~v~~~~ 51 (166)
.+.++|+.+..
T Consensus 20 ~mrilhiSD~H 30 (386)
T 3av0_A 20 HMMFVHIADNH 30 (386)
T ss_dssp CCEEEEECCCC
T ss_pred CeEEEEEccCC
Confidence 56788887654
No 310
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=35.08 E-value=1.2e+02 Score=24.37 Aligned_cols=65 Identities=6% Similarity=0.049 Sum_probs=39.5
Q ss_pred HHHHHhCCCCcccEEee-cCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEE
Q 044140 90 TSICAKREVNDMPVHVM-QGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIV 159 (166)
Q Consensus 90 ~~~~~~~~i~~~~~~v~-~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv 159 (166)
...+...|.. +..+ ..-+.+.|++.++++++|+|.+......... .+..+.+.+-+. ..+||++-
T Consensus 119 a~~L~~~G~e---Vi~LG~~vP~e~iv~aa~~~~~diVgLS~l~t~~~~--~m~~~i~~Lr~~g~~i~ViVG 185 (579)
T 3bul_A 119 GVVLQCNNYE---IVDLGVMVPAEKILRTAKEVNADLIGLSGLITPSLD--EMVNVAKEMERQGFTIPLLIG 185 (579)
T ss_dssp HHHHHTTTCE---EEECCSSBCHHHHHHHHHHHTCSEEEEECCSTHHHH--HHHHHHHHHHHTTCCSCEEEE
T ss_pred HHHHHHCCCE---EEECCCCCCHHHHHHHHHHcCCCEEEEEecCCCCHH--HHHHHHHHHHHcCCCCeEEEE
Confidence 3345556666 2222 3478999999999999999999865433221 123334443322 35888764
No 311
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=35.07 E-value=78 Score=20.81 Aligned_cols=33 Identities=6% Similarity=0.074 Sum_probs=20.8
Q ss_pred hCCCCcccEEeecCCchhHHHHHHhh----hCCcEEEEc
Q 044140 95 KREVNDMPVHVMQGDPRNVMTEAVER----FHPTILVLG 129 (166)
Q Consensus 95 ~~~i~~~~~~v~~g~~~~~I~~~a~~----~~~dliV~g 129 (166)
+.|.. + .....+|..+.|.+..++ .++|+||..
T Consensus 39 ~~G~~-v-~~~iv~Dd~~~I~~~l~~~~~~~~~DlVitt 75 (178)
T 2pbq_A 39 ITPFE-V-EYRVIPDERDLIEKTLIELADEKGCSLILTT 75 (178)
T ss_dssp CSCCE-E-EEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred hCCCE-E-EEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 67988 7 444455555555554443 279999884
No 312
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=34.97 E-value=70 Score=18.77 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=16.3
Q ss_pred chhHHHHHHhhhCCcEEEEccc
Q 044140 110 PRNVMTEAVERFHPTILVLGSH 131 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~ 131 (166)
......+..++..+|+|++...
T Consensus 38 ~~~~a~~~l~~~~~dlii~d~~ 59 (132)
T 3lte_A 38 NGFDAGIKLSTFEPAIMTLDLS 59 (132)
T ss_dssp SHHHHHHHHHHTCCSEEEEESC
T ss_pred CHHHHHHHHHhcCCCEEEEecC
Confidence 3455566677789999999865
No 313
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=34.94 E-value=1.1e+02 Score=21.04 Aligned_cols=71 Identities=7% Similarity=0.004 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCchh--HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDPRN--VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
..++.+.+.+.+.|+. +.+....++... ..++.....++|-||+......... ... ..+....+||+++-.
T Consensus 25 ~~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~-----~~~-~~~~~~~iPvV~~~~ 97 (293)
T 3l6u_A 25 RLINAFKAEAKANKYE-ALVATSQNSRISEREQILEFVHLKVDAIFITTLDDVYIG-----SAI-EEAKKAGIPVFAIDR 97 (293)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEECSSCHHHHHHHHHHHHHTTCSEEEEECSCTTTTH-----HHH-HHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHcCCE-EEEECCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHH-----HHH-HHHHHcCCCEEEecC
Confidence 3445555566667877 655444444432 4555566679999998654322211 112 334566899998854
No 314
>3av3_A Phosphoribosylglycinamide formyltransferase; structural genomics, riken structural genomics/proteomics in RSGI, rossmann fold; HET: MSE; 1.70A {Geobacillus kaustophilus}
Probab=34.80 E-value=1.1e+02 Score=20.85 Aligned_cols=42 Identities=10% Similarity=0.006 Sum_probs=27.2
Q ss_pred HHHHHhCCCCcccEEeec--CCc---hhHHHHHHhhhCCcEEEEcccC
Q 044140 90 TSICAKREVNDMPVHVMQ--GDP---RNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 90 ~~~~~~~~i~~~~~~v~~--g~~---~~~I~~~a~~~~~dliV~g~~~ 132 (166)
.+.+.+.|++ +...-.. .+. ..++.+..++.++|+||+...+
T Consensus 46 ~~~A~~~gIp-~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~a~y~ 92 (212)
T 3av3_A 46 IERAARENVP-AFVFSPKDYPSKAAFESEILRELKGRQIDWIALAGYM 92 (212)
T ss_dssp HHHHHHTTCC-EEECCGGGSSSHHHHHHHHHHHHHHTTCCEEEESSCC
T ss_pred HHHHHHcCCC-EEEeCcccccchhhhHHHHHHHHHhcCCCEEEEchhh
Confidence 3456677888 4431111 111 3478888999999999998653
No 315
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=34.50 E-value=72 Score=18.82 Aligned_cols=48 Identities=10% Similarity=0.106 Sum_probs=27.2
Q ss_pred hhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCC
Q 044140 111 RNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMP 162 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 162 (166)
.....+..++..+|+|++...-.+ .... .....+-.. ..+|++++-..
T Consensus 36 ~~~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (136)
T 1mvo_A 36 GEEALKKAETEKPDLIVLDVMLPK-LDGI---EVCKQLRQQKLMFPILMLTAK 84 (136)
T ss_dssp HHHHHHHHHHHCCSEEEEESSCSS-SCHH---HHHHHHHHTTCCCCEEEEECT
T ss_pred HHHHHHHHhhcCCCEEEEecCCCC-CCHH---HHHHHHHcCCCCCCEEEEECC
Confidence 444556667778999999865322 1111 123333333 45788888543
No 316
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=34.45 E-value=55 Score=25.02 Aligned_cols=13 Identities=8% Similarity=0.115 Sum_probs=9.8
Q ss_pred cCCccEEEEcCCC
Q 044140 151 HCSCTVMIVKMPK 163 (166)
Q Consensus 151 ~~~~pVlvv~~~~ 163 (166)
+..+||++++...
T Consensus 118 ~~gIpV~~I~GNH 130 (417)
T 4fbw_A 118 NVAIPVFSIHGNH 130 (417)
T ss_dssp CBSSCEEECCCGG
T ss_pred cCCCeEEEEecCC
Confidence 4589999998643
No 317
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=34.35 E-value=45 Score=23.48 Aligned_cols=43 Identities=5% Similarity=0.022 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEccc
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSH 131 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~ 131 (166)
+.+..+.+++.|.. +-+-+-.+++.+.+..+.. ..|+|.+.+-
T Consensus 123 ~~~~i~~ir~~G~k-~Gvalnp~Tp~e~l~~~l~--~vD~VlvMsV 165 (246)
T 3inp_A 123 IDRSLQLIKSFGIQ-AGLALNPATGIDCLKYVES--NIDRVLIMSV 165 (246)
T ss_dssp HHHHHHHHHTTTSE-EEEEECTTCCSGGGTTTGG--GCSEEEEECS
T ss_pred HHHHHHHHHHcCCe-EEEEecCCCCHHHHHHHHh--cCCEEEEeee
Confidence 34555555667777 6555555677777777776 6888877654
No 318
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=34.22 E-value=86 Score=20.65 Aligned_cols=42 Identities=7% Similarity=0.002 Sum_probs=25.0
Q ss_pred HHHHHHHHhCCCCcccEEeecCCchhHHHHHH----hhhCCcEEEEc
Q 044140 87 DKATSICAKREVNDMPVHVMQGDPRNVMTEAV----ERFHPTILVLG 129 (166)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a----~~~~~dliV~g 129 (166)
..+...+.+.|.. +.......|..+.|.+.. ++.++|+||..
T Consensus 43 ~~L~~~l~~~G~~-v~~~~iv~Dd~~~I~~al~~a~~~~~~DlVitt 88 (178)
T 2pjk_A 43 DIIKQLLIENGHK-IIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp HHHHHHHHHTTCE-EEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HHHHHHHHHCCCE-EEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 3445566777888 665544555555554443 32249999974
No 319
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=34.12 E-value=1.6e+02 Score=22.54 Aligned_cols=30 Identities=23% Similarity=0.207 Sum_probs=19.6
Q ss_pred EEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEe
Q 044140 12 AIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHA 47 (166)
Q Consensus 12 ~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v 47 (166)
...++-.+.-+...|..++. . +. .+.++..
T Consensus 105 G~~GsGKTT~~~~LA~~l~~-~-g~----~Vllvd~ 134 (425)
T 2ffh_A 105 GLQGSGKTTTAAKLALYYKG-K-GR----RPLLVAA 134 (425)
T ss_dssp CCTTSSHHHHHHHHHHHHHT-T-TC----CEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHH-c-CC----eEEEeec
Confidence 33555667777888888877 5 44 6766654
No 320
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=33.81 E-value=36 Score=20.47 Aligned_cols=51 Identities=2% Similarity=-0.037 Sum_probs=27.7
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCcc-chhhhcccHHHHHhhc-CCccEEEEcCCC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGA-VKRAVLGSVSDYSAHH-CSCTVMIVKMPK 163 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~-~~~~~~gs~~~~l~~~-~~~pVlvv~~~~ 163 (166)
.....++..++..+|+|++...-.+. ...+ .....+-.. ..+||+++-...
T Consensus 38 ~~~~a~~~l~~~~~dlvi~D~~l~~~~~~g~---~~~~~l~~~~~~~~ii~~s~~~ 90 (136)
T 3kto_A 38 SAESFMRQQISDDAIGMIIEAHLEDKKDSGI---ELLETLVKRGFHLPTIVMASSS 90 (136)
T ss_dssp SHHHHTTSCCCTTEEEEEEETTGGGBTTHHH---HHHHHHHHTTCCCCEEEEESSC
T ss_pred CHHHHHHHHhccCCCEEEEeCcCCCCCccHH---HHHHHHHhCCCCCCEEEEEcCC
Confidence 34445556667789999998552220 1111 123333333 358898886543
No 321
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=33.70 E-value=97 Score=20.07 Aligned_cols=51 Identities=12% Similarity=0.055 Sum_probs=29.5
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMPK 163 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~~ 163 (166)
.......+..++..+|+|++.-.-.+ ...+ .....+-.. ..+||+++-...
T Consensus 35 ~~~~~al~~~~~~~~dlvl~D~~lp~-~~g~---~~~~~l~~~~~~~~ii~ls~~~ 86 (208)
T 1yio_A 35 DCASTFLEHRRPEQHGCLVLDMRMPG-MSGI---ELQEQLTAISDGIPIVFITAHG 86 (208)
T ss_dssp SSHHHHHHHCCTTSCEEEEEESCCSS-SCHH---HHHHHHHHTTCCCCEEEEESCT
T ss_pred CCHHHHHHhhhccCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCCEEEEeCCC
Confidence 34455666777788999999865322 1111 123333333 358999886543
No 322
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=33.59 E-value=66 Score=23.46 Aligned_cols=41 Identities=7% Similarity=0.079 Sum_probs=26.7
Q ss_pred CCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEE
Q 044140 108 GDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVM 157 (166)
Q Consensus 108 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVl 157 (166)
|+......+....+++|.||+-....+ ..+.+..++++||+
T Consensus 78 gEsl~DTarvLs~~~~D~iviR~~~~~---------~~~~la~~~~vPVI 118 (304)
T 3r7f_A 78 GETLYDTIRTLESIGVDVCVIRHSEDE---------YYEELVSQVNIPIL 118 (304)
T ss_dssp SSCHHHHHHHHHHHTCCEEEEECSSTT---------CHHHHHHHCSSCEE
T ss_pred CCCHHHHHHHHHHhcCCEEEEecCChh---------HHHHHHHhCCCCEE
Confidence 444445555556667999999755433 23556778899975
No 323
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=33.53 E-value=47 Score=21.80 Aligned_cols=43 Identities=9% Similarity=-0.063 Sum_probs=27.9
Q ss_pred CCCCCCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecC
Q 044140 1 MGDQTKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPN 50 (166)
Q Consensus 1 m~~~~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~ 50 (166)
|+.| ++||+.+.....+..+.+..++-+. ..+. ++.++.+.+.
T Consensus 1 M~~m--mkilii~~S~g~T~~la~~i~~~l~-~~g~----~v~~~~l~~~ 43 (199)
T 2zki_A 1 MSCK--PNILVLFYGYGSIVELAKEIGKGAE-EAGA----EVKIRRVRET 43 (199)
T ss_dssp --CC--CEEEEEECCSSHHHHHHHHHHHHHH-HHSC----EEEEEECCCC
T ss_pred CCCC--cEEEEEEeCccHHHHHHHHHHHHHH-hCCC----EEEEEehhHh
Confidence 5433 4777766554557777888777776 5566 8888887553
No 324
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=33.51 E-value=57 Score=23.61 Aligned_cols=46 Identities=11% Similarity=0.156 Sum_probs=30.1
Q ss_pred HHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEE-Ec
Q 044140 114 MTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMI-VK 160 (166)
Q Consensus 114 I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlv-v~ 160 (166)
+++.+.+.+.|.|++|+.+-..+... +..+...+=+.++.||++ .|
T Consensus 58 ~~~~~~~sGtDai~VGS~~vt~~~~~-~~~~v~~ik~~~~lPvil~fP 104 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLASTDYESFESH-MEPYVAAVKAATPLPVVLHFP 104 (286)
T ss_dssp HHHHHHHTTCSCEEEECSCCSSHHHH-HHHHHHHHHHHCSSCEEEECC
T ss_pred HHHHHHhcCCCEEEEccCCCCcchHH-HHHHHHHHHHhCCCCEEEECC
Confidence 56666777999999993333322222 234555555558999999 87
No 325
>3ln7_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamylcysteine ligase domain, ATP-grAsp domain, HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Probab=33.20 E-value=47 Score=27.57 Aligned_cols=24 Identities=8% Similarity=-0.090 Sum_probs=20.5
Q ss_pred CCchhHHHHHHhhhCCcEEEEccc
Q 044140 108 GDPRNVMTEAVERFHPTILVLGSH 131 (166)
Q Consensus 108 g~~~~~I~~~a~~~~~dliV~g~~ 131 (166)
+-..+.|++.|++.++|++++|..
T Consensus 432 ~~st~~Iv~~A~~~gid~~vlg~e 455 (757)
T 3ln7_A 432 ELSTQALLFDVIQKGIHTEILDEN 455 (757)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEETT
T ss_pred CCCHHHHHHHHHHhCCCEEEECCC
Confidence 344789999999999999999964
No 326
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=33.18 E-value=74 Score=21.88 Aligned_cols=47 Identities=11% Similarity=0.024 Sum_probs=19.6
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEE
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 159 (166)
.+++..++.++|.|.+.........+...-.....+.+.+++||++.
T Consensus 39 ~~a~~~~~~G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ 85 (247)
T 3tdn_A 39 DWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIAS 85 (247)
T ss_dssp HHHHHHHHTTCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEE
T ss_pred HHHHHHHHcCCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEe
Confidence 44444455556655553221111000001123444555556666554
No 327
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=33.13 E-value=1.4e+02 Score=21.84 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=31.2
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
......++.+++..+|+|++.-.-.. ...+ ...+.+....++||+++-..
T Consensus 36 ~~~~eAl~~l~~~~pDlVllDi~mp~-~dGl---ell~~l~~~~p~pVIvlS~~ 85 (349)
T 1a2o_A 36 PDPLVARDLIKKFNPDVLTLDVEMPR-MDGL---DFLEKLMRLRPMPVVMVSSL 85 (349)
T ss_dssp SSHHHHHHHHHHHCCSEEEEECCCSS-SCHH---HHHHHHHHSSCCCEEEEECC
T ss_pred CCHHHHHHHHhccCCCEEEEECCCCC-CCHH---HHHHHHHhcCCCcEEEEECC
Confidence 34455566677789999999865321 1111 23456666667999988643
No 328
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=33.03 E-value=70 Score=18.21 Aligned_cols=48 Identities=6% Similarity=0.037 Sum_probs=26.7
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKM 161 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~ 161 (166)
......+..++..+|++++...-.+ .... ...+.+-.. ..+|++++-.
T Consensus 33 ~~~~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~ 81 (116)
T 3a10_A 33 NGEEALKKFFSGNYDLVILDIEMPG-ISGL---EVAGEIRKKKKDAKIILLTA 81 (116)
T ss_dssp SHHHHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHHHCTTCCEEEEES
T ss_pred CHHHHHHHHhcCCCCEEEEECCCCC-CCHH---HHHHHHHccCCCCeEEEEEC
Confidence 3455556667778999999865322 1111 123333332 3578888754
No 329
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=32.42 E-value=76 Score=18.45 Aligned_cols=50 Identities=4% Similarity=-0.085 Sum_probs=27.9
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh---cCCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH---HCSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~~~ 162 (166)
.......+..++..+|++++...-.+ .... .....+-. ...+|++++-..
T Consensus 36 ~~~~~a~~~~~~~~~dlvi~D~~l~~-~~g~---~l~~~l~~~~~~~~~~ii~~s~~ 88 (128)
T 1jbe_A 36 EDGVDALNKLQAGGYGFVISDWNMPN-MDGL---ELLKTIRAXXAMSALPVLMVTAE 88 (128)
T ss_dssp SSHHHHHHHHTTCCCCEEEEESCCSS-SCHH---HHHHHHHC--CCTTCCEEEEESS
T ss_pred CCHHHHHHHHHhcCCCEEEEeCCCCC-CCHH---HHHHHHHhhcccCCCcEEEEecC
Confidence 33455556677778999999865322 1111 12333332 235788888543
No 330
>3iz5_H 60S ribosomal protein L7A (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_H
Probab=32.35 E-value=68 Score=22.75 Aligned_cols=47 Identities=15% Similarity=0.090 Sum_probs=31.3
Q ss_pred hhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 111 RNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.++...+...+.|+|++..- ....-. ...-.|.+...+|..+|+.
T Consensus 132 vneVTklVE~kKAqLVVIA~DV-dPiElV---~fLPaLC~k~gVPY~iVk~ 178 (258)
T 3iz5_H 132 LNHVTYLIEQSKAQLVVIAHDV-DPIELV---VWLPALCRKMEVPYCIVKG 178 (258)
T ss_dssp HHHHHHHHHTTCEEEEEEESCC-SSTHHH---HHHHHHHTTTTCCEEEESC
T ss_pred cHHHHHHHHcCcceEEEEeCCC-ChHHHH---hHHHHHHHhcCCCeEEECC
Confidence 5778888899999999998542 222211 1234566777888888775
No 331
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=32.32 E-value=1.2e+02 Score=20.66 Aligned_cols=51 Identities=10% Similarity=0.089 Sum_probs=30.5
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMPK 163 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~~ 163 (166)
......++...+..+|+|++.-.-.+ ...+ .....+-....+||+++-...
T Consensus 68 ~~~~~al~~~~~~~~DlvllD~~lp~-~~G~---~l~~~lr~~~~~~iI~lt~~~ 118 (249)
T 3q9s_A 68 DSAMNGLIKAREDHPDLILLDLGLPD-FDGG---DVVQRLRKNSALPIIVLTARD 118 (249)
T ss_dssp SSHHHHHHHHHHSCCSEEEEECCSCH-HHHH---HHHHHHHTTCCCCEEEEESCC
T ss_pred CCHHHHHHHHhcCCCCEEEEcCCCCC-CCHH---HHHHHHHcCCCCCEEEEECCC
Confidence 34455566677789999999865322 1111 233444445568999986543
No 332
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=32.18 E-value=1.2e+02 Score=20.76 Aligned_cols=71 Identities=4% Similarity=-0.049 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCch--hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDPR--NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
..++.+.+.+.+.|+. +.+....++.. ...++.....++|-||+......... .. -..+....+||+++-.
T Consensus 22 ~~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~-----~~-~~~~~~~~iPvV~~~~ 94 (291)
T 3l49_A 22 KAYQAQIAEIERLGGT-AIALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLN-----PW-LQKINDAGIPLFTVDT 94 (291)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHHHHH-----HH-HHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHcCCE-EEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhhhH-----HH-HHHHHHCCCcEEEecC
Confidence 3344555566667777 55544444443 34556666678999998644211111 11 2335566889888854
No 333
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=31.49 E-value=61 Score=25.10 Aligned_cols=52 Identities=8% Similarity=0.027 Sum_probs=37.1
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCC----cc---chhhhcccHHHHHhhcCCccE--EEEc
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGY----GA---VKRAVLGSVSDYSAHHCSCTV--MIVK 160 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~----~~---~~~~~~gs~~~~l~~~~~~pV--lvv~ 160 (166)
...+++++.|++.+.-+|+-.+.+. ++ +....+......+..++.+|| ++++
T Consensus 32 e~i~Ail~aAee~~sPVIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~~vPv~pV~Lh 92 (450)
T 3txv_A 32 LVIEAAMLRAHREKAPVLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADRIEFPREKILLG 92 (450)
T ss_dssp HHHHHHHHHHHHSCSCEEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHcCcCcccEEEE
Confidence 6689999999999999888876542 22 212345667788888889996 4443
No 334
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=31.46 E-value=1.2e+02 Score=20.67 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=14.6
Q ss_pred hHHHHHHhhhCCcEEEEcccCCc
Q 044140 112 NVMTEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~~~~~ 134 (166)
..+.+... .+|.||+|+.-..
T Consensus 71 ~~~~~~l~--~AD~iI~~sP~y~ 91 (242)
T 1sqs_A 71 GVIKKELL--ESDIIIISSPVYL 91 (242)
T ss_dssp HHHHHHHH--HCSEEEEEEEECS
T ss_pred HHHHHHHH--HCCEEEEEccccc
Confidence 34444444 8999999987543
No 335
>2i0f_A 6,7-dimethyl-8-ribityllumazine synthase 1; lumazine synthase RIBH1, transferase; 2.22A {Brucella abortus} PDB: 2f59_A 2o6h_A*
Probab=31.39 E-value=1.1e+02 Score=19.93 Aligned_cols=76 Identities=14% Similarity=0.059 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhCCCCcccEEeecC--CchhHHHHHHhh-----hCCcEEEE-cc--cCCccchhhhcccHHHHHhh-
Q 044140 82 AQKVADKATSICAKREVNDMPVHVMQG--DPRNVMTEAVER-----FHPTILVL-GS--HGYGAVKRAVLGSVSDYSAH- 150 (166)
Q Consensus 82 ~~~~l~~~~~~~~~~~i~~~~~~v~~g--~~~~~I~~~a~~-----~~~dliV~-g~--~~~~~~~~~~~gs~~~~l~~- 150 (166)
.+.+++.+.+.+.+.|.+ +++..+.| +..-.+.+.++. .++|-||. |. +|.+.--.+....++.-|++
T Consensus 27 ~~~Ll~gA~~~l~~~G~~-i~v~~VPGafEiP~aa~~la~~~~~~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~gl~~v 105 (157)
T 2i0f_A 27 ADALLDGAKAALDEAGAT-YDVVTVPGALEIPATISFALDGADNGGTEYDGFVALGTVIRGETYHFDIVSNESCRALTDL 105 (157)
T ss_dssp HHHHHHHHHHHHHHTTCE-EEEEEESSGGGHHHHHHHHHHHHHTTCCCCSEEEEEEEEECCSSSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC-eEEEECCcHHHHHHHHHHHHhhccccCCCCCEEEEeeeeecCCchHHHHHHHHHHHHHHHH
Confidence 345666777777778866 77666777 666777777877 77887764 43 23333334444555555544
Q ss_pred --cCCccEEE
Q 044140 151 --HCSCTVMI 158 (166)
Q Consensus 151 --~~~~pVlv 158 (166)
+...||..
T Consensus 106 sl~~~vPV~~ 115 (157)
T 2i0f_A 106 SVEESIAIGN 115 (157)
T ss_dssp HHHTTCCEEE
T ss_pred HhhcCCCEEE
Confidence 56778764
No 336
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=31.31 E-value=67 Score=23.88 Aligned_cols=25 Identities=36% Similarity=0.445 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCch
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDPR 111 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~~ 111 (166)
..++++.+.+.+.+. ...+..||..
T Consensus 30 ~~l~~l~~~~~~~~~---D~vliaGDl~ 54 (379)
T 3tho_B 30 KALDKVVEEAEKREV---DLILLTGDLL 54 (379)
T ss_dssp HHHHHHHHHHHHHTC---SEEEECSCCB
T ss_pred HHHHHHHHHHHhcCC---CEEEECCCcc
Confidence 344445444444333 4566666655
No 337
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=31.28 E-value=1.3e+02 Score=20.82 Aligned_cols=69 Identities=14% Similarity=0.089 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCCcccEEeec--CCchh--HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 86 ADKATSICAKREVNDMPVHVMQ--GDPRN--VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~--g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
++.+.+.+.+.|+. +.+.... +++.. ..++.....++|-||+.......... .-.-+....+||+.+-.
T Consensus 22 ~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~------~~~~~~~~giPvV~~~~ 94 (297)
T 3rot_A 22 FQGAKKAAEELKVD-LQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTAFSK------SLQRANKLNIPVIAVDT 94 (297)
T ss_dssp HHHHHHHHHHHTCE-EEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHH------HHHHHHHHTCCEEEESC
T ss_pred HHHHHHHHHHhCcE-EEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHH------HHHHHHHCCCCEEEEcC
Confidence 34444444556777 5544333 23333 44555556789999986543332221 11235566899998854
No 338
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=31.13 E-value=86 Score=18.67 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=27.0
Q ss_pred hhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc---CCccEEEEcCC
Q 044140 111 RNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH---CSCTVMIVKMP 162 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~~ 162 (166)
....++..++..+|+|++...-.+ ...+ .....+-.. ..+||+++-..
T Consensus 36 ~~~al~~l~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~ls~~ 86 (138)
T 3c3m_A 36 GEECLEALNATPPDLVLLDIMMEP-MDGW---ETLERIKTDPATRDIPVLMLTAK 86 (138)
T ss_dssp HHHHHHHHHHSCCSEEEEESCCSS-SCHH---HHHHHHHHSTTTTTSCEEEEESS
T ss_pred HHHHHHHHhccCCCEEEEeCCCCC-CCHH---HHHHHHHcCcccCCCCEEEEECC
Confidence 445556667778999999865322 1111 123333322 35789888543
No 339
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=31.11 E-value=91 Score=22.17 Aligned_cols=24 Identities=4% Similarity=0.092 Sum_probs=21.2
Q ss_pred CchhHHHHHHhhhCCcEEEEcccC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~ 132 (166)
-+.+.|++.++++++|+|.+..--
T Consensus 167 vp~e~iv~aa~e~~~d~VglS~l~ 190 (262)
T 1xrs_B 167 VANEDFIKKAVELEADVLLVSQTV 190 (262)
T ss_dssp BCHHHHHHHHHHTTCSEEEEECCC
T ss_pred CCHHHHHHHHHHcCCCEEEEEeec
Confidence 678999999999999999998653
No 340
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=31.10 E-value=85 Score=18.59 Aligned_cols=46 Identities=9% Similarity=0.015 Sum_probs=25.0
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcC-CccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHC-SCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~-~~pVlvv~~~ 162 (166)
......+...++..+|+|++ .+..++ .....+-... .+||+++-..
T Consensus 49 ~~~~~al~~l~~~~~dlvi~--~~~~g~------~~~~~l~~~~~~~~ii~ls~~ 95 (137)
T 2pln_A 49 ESLEDGEYLMDIRNYDLVMV--SDKNAL------SFVSRIKEKHSSIVVLVSSDN 95 (137)
T ss_dssp SCHHHHHHHHHHSCCSEEEE--CSTTHH------HHHHHHHHHSTTSEEEEEESS
T ss_pred CCHHHHHHHHHcCCCCEEEE--cCccHH------HHHHHHHhcCCCccEEEEeCC
Confidence 33445556667778999992 222221 1223332234 6888888643
No 341
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=31.04 E-value=82 Score=20.36 Aligned_cols=32 Identities=3% Similarity=0.058 Sum_probs=19.8
Q ss_pred CCCcccEEeecCCchhHHHHHHhh----hCCcEEEEc
Q 044140 97 EVNDMPVHVMQGDPRNVMTEAVER----FHPTILVLG 129 (166)
Q Consensus 97 ~i~~~~~~v~~g~~~~~I~~~a~~----~~~dliV~g 129 (166)
|.. +.......|..+.|.+..++ .++|+||..
T Consensus 43 G~~-v~~~~iv~Dd~~~i~~~l~~~~~~~~~DlVitt 78 (167)
T 1uuy_A 43 GAK-VVATAVVPDEVERIKDILQKWSDVDEMDLILTL 78 (167)
T ss_dssp SEE-EEEEEEECSCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred CcE-EeEEEEcCCCHHHHHHHHHHHHhcCCCCEEEEC
Confidence 676 55544555555555555443 379999884
No 342
>2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str}
Probab=30.80 E-value=1.6e+02 Score=21.70 Aligned_cols=48 Identities=6% Similarity=-0.115 Sum_probs=31.5
Q ss_pred HHHHHHhhhCCcEEEEcccCCcc-chhhhcccHHHHHhh-cCCccEEEEc
Q 044140 113 VMTEAVERFHPTILVLGSHGYGA-VKRAVLGSVSDYSAH-HCSCTVMIVK 160 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~-~~~~~~gs~~~~l~~-~~~~pVlvv~ 160 (166)
.+.+.+++.++|-+++....+.. ...--+=..-..|.. .++.||++.-
T Consensus 109 ~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~IA~aa~~lPiilYn 158 (344)
T 2hmc_A 109 AHAVHAQKVGAKGLMVIPRVLSRGSVIAAQKAHFKAILSAAPEIPAVIYN 158 (344)
T ss_dssp HHHHHHHHHTCSEEEECCCCSSSTTCHHHHHHHHHHHHHHSTTSCEEEEE
T ss_pred HHHHHHHhcCCCEEEECCCccCCCCCHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 34677889999999998765543 222111123345777 7899999874
No 343
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=30.72 E-value=1.5e+02 Score=21.26 Aligned_cols=73 Identities=8% Similarity=-0.022 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhCCCCcccEEeec--C------CchhHHHHHHh---hhCCcEEEEcccCCccchhhhcccHHHHHhhcC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQ--G------DPRNVMTEAVE---RFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHC 152 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~--g------~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~ 152 (166)
+...+..+.+++.|+. ++..+.. | ...+.++++++ +.++|.|.++.. .+...........+.+..+.
T Consensus 124 ~~~~~~v~~a~~~G~~-V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT-~G~~~P~~~~~lv~~l~~~~ 201 (302)
T 2ftp_A 124 ERFVPVLEAARQHQVR-VRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDT-IGVGTAGATRRLIEAVASEV 201 (302)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEEEEEES-SSCCCHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHCCCe-EEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEEeCC-CCCcCHHHHHHHHHHHHHhC
Confidence 3345556677778888 7654432 2 23455555555 899999999832 23333444455666777777
Q ss_pred C-ccEEE
Q 044140 153 S-CTVMI 158 (166)
Q Consensus 153 ~-~pVlv 158 (166)
+ +|+-+
T Consensus 202 ~~~~l~~ 208 (302)
T 2ftp_A 202 PRERLAG 208 (302)
T ss_dssp CGGGEEE
T ss_pred CCCeEEE
Confidence 4 66544
No 344
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=30.42 E-value=71 Score=21.67 Aligned_cols=49 Identities=12% Similarity=-0.010 Sum_probs=28.8
Q ss_pred hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 112 NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.+.++.+.+.++|.|++......+...-+--.....+....++||++.-
T Consensus 157 ~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~G 205 (253)
T 1h5y_A 157 VKWAKEVEELGAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASG 205 (253)
T ss_dssp HHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHHhCCCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeC
Confidence 4556777788999998865443222111111234555666688988754
No 345
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=30.17 E-value=95 Score=18.88 Aligned_cols=19 Identities=5% Similarity=0.223 Sum_probs=10.2
Q ss_pred hHHHHHHhhhCCcEEEEcc
Q 044140 112 NVMTEAVERFHPTILVLGS 130 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~ 130 (166)
+.+.++++++++|.++++.
T Consensus 55 ~~l~~~~~~~~id~viia~ 73 (141)
T 3nkl_A 55 KYLERLIKKHCISTVLLAV 73 (141)
T ss_dssp GGHHHHHHHHTCCEEEECC
T ss_pred HHHHHHHHHCCCCEEEEeC
Confidence 3455555555555555553
No 346
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=29.80 E-value=1.4e+02 Score=20.74 Aligned_cols=69 Identities=10% Similarity=0.047 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCc--hhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDP--RNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~--~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
..++.+.+.+.+.|.. +......++. ...+++.....++|-||+....... ..-..+....+||+++-.
T Consensus 44 ~~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~--------~~~~~l~~~~iPvV~i~~ 114 (305)
T 3huu_A 44 DVLNGINQACNVRGYS-TRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDD--------PIEHLLNEFKVPYLIVGK 114 (305)
T ss_dssp HHHHHHHHHHHHHTCE-EEECCCSSHHHHHHHHHHHHHTTCCSEEEESSCBTTC--------HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHCCCE-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEeCCcCCc--------HHHHHHHHcCCCEEEECC
Confidence 3444555555556766 4432222222 2345666666788888875432211 112334566888888744
No 347
>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...
Probab=29.77 E-value=1.4e+02 Score=20.53 Aligned_cols=33 Identities=15% Similarity=0.026 Sum_probs=19.5
Q ss_pred CCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEee
Q 044140 6 KPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHAR 48 (166)
Q Consensus 6 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~ 48 (166)
..+++++.|+... ..+++.+ . ..+. .+..+|+-
T Consensus 12 ~~~lilAlD~~~~-~~a~~~v----~-~~~~----~v~~~Kvg 44 (228)
T 3m47_A 12 MNRLILAMDLMNR-DDALRVT----G-EVRE----YIDTVKIG 44 (228)
T ss_dssp GGGEEEECCCCSH-HHHHHHH----H-TTTT----TCSEEEEE
T ss_pred CCCeEEEeCCCCH-HHHHHHH----H-HcCC----cccEEEEc
Confidence 3579999999753 3444444 4 3333 45566663
No 348
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Probab=29.61 E-value=1e+02 Score=24.25 Aligned_cols=45 Identities=13% Similarity=0.189 Sum_probs=32.2
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcC-CccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHC-SCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~-~~pVlvv~~~ 162 (166)
..+...++.|.+.++..||.-+.+ |.++..+.+.- +||++.+-+.
T Consensus 381 aia~aa~~~a~~~~a~aIv~~T~s---------G~ta~~isr~RP~~pI~a~t~~ 426 (500)
T 1a3w_A 381 TVAASAVAAVFEQKAKAIIVLSTS---------GTTPRLVSKYRPNCPIILVTRC 426 (500)
T ss_dssp HHHHHHHHHHHHHTCSCEEEECSS---------SHHHHHHHHTCCSSCEEEEESC
T ss_pred HHHHHHHHHHHhcCCCEEEEECCC---------chHHHHHHhhCCCCCEEEEcCC
Confidence 355666777888899988876552 56666677665 4999998654
No 349
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=29.60 E-value=73 Score=21.59 Aligned_cols=45 Identities=13% Similarity=0.132 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCC--CcccEEeecCCchhH--------------HHHHH-------hhhCCcEEEEccc
Q 044140 86 ADKATSICAKREV--NDMPVHVMQGDPRNV--------------MTEAV-------ERFHPTILVLGSH 131 (166)
Q Consensus 86 l~~~~~~~~~~~i--~~~~~~v~~g~~~~~--------------I~~~a-------~~~~~dliV~g~~ 131 (166)
.+.+++.+.+.|. . -.+.+..|+..+. +-+++ ....+|+|++-..
T Consensus 64 ~~~ar~~l~~~g~~~~-~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~ 131 (202)
T 3cvo_A 64 ARMMKAWLAANPPAEG-TEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR 131 (202)
T ss_dssp HHHHHHHHHHSCCCTT-CEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS
T ss_pred HHHHHHHHHHcCCCCC-CceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC
Confidence 4455556667776 4 4566666764432 33443 1247999999865
No 350
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A
Probab=29.51 E-value=1.3e+02 Score=21.07 Aligned_cols=36 Identities=6% Similarity=-0.115 Sum_probs=27.7
Q ss_pred CCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeec
Q 044140 6 KPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARP 49 (166)
Q Consensus 6 ~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~ 49 (166)
.++++|++.|.-+|..++..+.+... . +++.+++..
T Consensus 25 ~~~vvv~lSGGiDSsv~~~l~~~~~~----~----~v~av~~~~ 60 (268)
T 1xng_A 25 FKKVVYGLSGGLDSAVVGVLCQKVFK----E----NAHALLMPS 60 (268)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHHG----G----GEEEEECCC
T ss_pred CCCEEEEccCcHHHHHHHHHHHHhCC----C----CEEEEEeCC
Confidence 46899999999999988887766542 3 778888753
No 351
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=29.17 E-value=88 Score=18.17 Aligned_cols=50 Identities=4% Similarity=-0.018 Sum_probs=28.6
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 162 (166)
.......+..++..+|++++...-.+ .... .....+-.. ..+||+++-..
T Consensus 34 ~~~~~~~~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (126)
T 1dbw_A 34 QSAEAFLAFAPDVRNGVLVTDLRMPD-MSGV---ELLRNLGDLKINIPSIVITGH 84 (126)
T ss_dssp SCHHHHHHHGGGCCSEEEEEECCSTT-SCHH---HHHHHHHHTTCCCCEEEEECT
T ss_pred CCHHHHHHHHhcCCCCEEEEECCCCC-CCHH---HHHHHHHhcCCCCCEEEEECC
Confidence 33556667777778999999854322 1111 122333332 35899888654
No 352
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=29.14 E-value=91 Score=18.29 Aligned_cols=68 Identities=10% Similarity=0.004 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCCcccEEeecCCchhHHHHHHhh-------hCCcEEEEcccCCccchhhhcccHHHHHhhc---CCccEE
Q 044140 88 KATSICAKREVNDMPVHVMQGDPRNVMTEAVER-------FHPTILVLGSHGYGAVKRAVLGSVSDYSAHH---CSCTVM 157 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~-------~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~---~~~pVl 157 (166)
.+...+.+.|.. .. +..-.......+..++ ..+|+|++...-.+ ...+ ...+.+-.. ..+|++
T Consensus 17 ~l~~~L~~~~~~-~~--v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~-~~g~---~~~~~l~~~~~~~~~pii 89 (140)
T 1k68_A 17 LIQEALANSTVP-HE--VVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPK-KDGR---EVLAEIKSDPTLKRIPVV 89 (140)
T ss_dssp HHHHHHHTCSSC-CE--EEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSS-SCHH---HHHHHHHHSTTGGGSCEE
T ss_pred HHHHHHHhcCCC-ce--EEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCc-ccHH---HHHHHHHcCcccccccEE
Confidence 344444555553 23 2233334455555555 78999999865322 1111 223344333 358898
Q ss_pred EEcCC
Q 044140 158 IVKMP 162 (166)
Q Consensus 158 vv~~~ 162 (166)
++-..
T Consensus 90 ~ls~~ 94 (140)
T 1k68_A 90 VLSTS 94 (140)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 88654
No 353
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=28.97 E-value=1.8e+02 Score=21.56 Aligned_cols=63 Identities=3% Similarity=0.041 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.++.+.+.+.+.|.. +.... .+.....++.....++|-||+... .......+...++||+++-
T Consensus 42 l~~gi~~~a~~~g~~-~~i~~--~~~~~~~i~~l~~~~vDGiIi~~~----------~~~~~~~l~~~~iPvV~i~ 104 (412)
T 4fe7_A 42 VVEGVGEYLQASQSE-WDIFI--EEDFRARIDKIKDWLGDGVIADFD----------DKQIEQALADVDVPIVGVG 104 (412)
T ss_dssp HHHHHHHHHHHHTCC-EEEEE--CC-CC--------CCCSEEEEETT----------CHHHHHHHTTCCSCEEEEE
T ss_pred HHHHHHHHHHhcCCC-eEEEe--cCCccchhhhHhcCCCCEEEEecC----------ChHHHHHHhhCCCCEEEec
Confidence 344445555556776 54433 323344466667779999998321 1112345667789999884
No 354
>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} SCOP: c.1.10.2
Probab=28.60 E-value=57 Score=24.41 Aligned_cols=56 Identities=20% Similarity=0.245 Sum_probs=36.4
Q ss_pred CCchhHHHHHHhhhCCcEEEEcccCCccc-h--h----hhccc-----HHHHHhhcCCccEEEEcCCC
Q 044140 108 GDPRNVMTEAVERFHPTILVLGSHGYGAV-K--R----AVLGS-----VSDYSAHHCSCTVMIVKMPK 163 (166)
Q Consensus 108 g~~~~~I~~~a~~~~~dliV~g~~~~~~~-~--~----~~~gs-----~~~~l~~~~~~pVlvv~~~~ 163 (166)
-+..+++++.|++.+..+|+-.+.+.... . . .++|. ....+..+.++||.+-=++.
T Consensus 42 ~e~~~Avl~AAee~~sPvIlq~s~g~~~~~~g~~~~~~~~~ga~~~a~~v~~~A~~~~VPVaLHlDHg 109 (357)
T 3qm3_A 42 TDSINAVLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILHTDHA 109 (357)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEECHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECCC
T ss_pred HHHHHHHHHHHHHhCCCEEEEcChhHHhhccCccchhhHHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 37889999999999999999765532111 0 0 11232 24567778899997654443
No 355
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=28.49 E-value=1.9e+02 Score=21.67 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=25.1
Q ss_pred hHHHHHHhhhC--C---cEEE-EcccCCccchhhhcccHHHHHh--hcCCccEEEEcC
Q 044140 112 NVMTEAVERFH--P---TILV-LGSHGYGAVKRAVLGSVSDYSA--HHCSCTVMIVKM 161 (166)
Q Consensus 112 ~~I~~~a~~~~--~---dliV-~g~~~~~~~~~~~~gs~~~~l~--~~~~~pVlvv~~ 161 (166)
+.+.+.+.+.+ + |+|| +|...- +.++..+. ..-.+|++.||=
T Consensus 90 ~~~~~~~~~~~~~~~r~d~iIalGGGsv--------~D~ak~~Aa~~~rgip~i~IPT 139 (393)
T 1sg6_A 90 ADIEDWMLSQNPPCGRDTVVIALGGGVI--------GDLTGFVASTYMRGVRYVQVPT 139 (393)
T ss_dssp HHHHHHHHTSSSCCCTTCEEEEEESHHH--------HHHHHHHHHHGGGCCEEEEEEC
T ss_pred HHHHHHHHHcCCCCCCCCEEEEECCcHH--------HHHHHHHHHHhcCCCCEEEECC
Confidence 66777788888 8 8877 553211 22222222 244689988884
No 356
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...
Probab=28.47 E-value=1.8e+02 Score=21.62 Aligned_cols=35 Identities=9% Similarity=0.143 Sum_probs=24.0
Q ss_pred CCCCcccEEeecC-C--chhHHHHHHhhhCCcEEEEccc
Q 044140 96 REVNDMPVHVMQG-D--PRNVMTEAVERFHPTILVLGSH 131 (166)
Q Consensus 96 ~~i~~~~~~v~~g-~--~~~~I~~~a~~~~~dliV~g~~ 131 (166)
..++ +.+.+..+ + ....+.+.+++.++|.|++..+
T Consensus 219 ~~~P-v~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~nt 256 (367)
T 3zwt_A 219 HRPA-VLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNT 256 (367)
T ss_dssp GCCE-EEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCC
T ss_pred CCce-EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 3566 66666555 2 3456778888999999998644
No 357
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=28.38 E-value=1.3e+02 Score=19.84 Aligned_cols=49 Identities=12% Similarity=0.028 Sum_probs=28.2
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMP 162 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 162 (166)
......+..++..+|+|++.-.-.+ ...+ .....+-.. ..+||+++-..
T Consensus 39 ~~~~a~~~~~~~~~dlvllD~~l~~-~~g~---~~~~~l~~~~~~~~ii~lt~~ 88 (233)
T 1ys7_A 39 DGAEALRSATENRPDAIVLDINMPV-LDGV---SVVTALRAMDNDVPVCVLSAR 88 (233)
T ss_dssp SHHHHHHHHHHSCCSEEEEESSCSS-SCHH---HHHHHHHHTTCCCCEEEEECC
T ss_pred CHHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCCEEEEEcC
Confidence 3444556667779999999865322 1111 123333332 46899988653
No 358
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=28.37 E-value=1e+02 Score=18.60 Aligned_cols=21 Identities=10% Similarity=0.153 Sum_probs=16.1
Q ss_pred hhHHHHHHhhhCCcEEEEccc
Q 044140 111 RNVMTEAVERFHPTILVLGSH 131 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~~ 131 (166)
.++.++..++..+|+|++...
T Consensus 47 ~~~al~~~~~~~~dlvl~D~~ 67 (143)
T 3m6m_D 47 AEQVLDAMAEEDYDAVIVDLH 67 (143)
T ss_dssp HHHHHHHHHHSCCSEEEEESC
T ss_pred HHHHHHHHhcCCCCEEEEeCC
Confidence 455666777789999999855
No 359
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=28.27 E-value=57 Score=27.24 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=30.5
Q ss_pred hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 112 NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
..|.++++++++++|++|....+.-...|+..+.... ...++|++++..
T Consensus 373 ~~l~~li~~~~~~~IaIGngtasret~~~v~~l~~~~-~~~~i~~v~v~e 421 (785)
T 3bzc_A 373 AVLAALCAKHQVELIAIGNGTASRETDKLAGELIKKY-PGMKLTKIMVSE 421 (785)
T ss_dssp HHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHHHHC-GGGCCEEEEECC
T ss_pred HHHHHHHHHcCCCEEEECCCccCHHHHHHHHHHHHhc-ccCCCCEEEEcC
Confidence 5688999999999999997544332223333322211 113588888765
No 360
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=28.15 E-value=1.1e+02 Score=22.30 Aligned_cols=42 Identities=7% Similarity=0.145 Sum_probs=28.4
Q ss_pred HHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccC
Q 044140 88 KATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~ 132 (166)
.+.+.+.+.|++ +.. ...-...++.+..++.++|++|+...+
T Consensus 54 ~v~~~A~~~gIp-v~~--~~~~~~~~~~~~l~~~~~Dliv~~~y~ 95 (318)
T 3q0i_A 54 PVKTLALEHNVP-VYQ--PENFKSDESKQQLAALNADLMVVVAYG 95 (318)
T ss_dssp HHHHHHHHTTCC-EEC--CSCSCSHHHHHHHHTTCCSEEEESSCC
T ss_pred HHHHHHHHcCCC-EEc--cCcCCCHHHHHHHHhcCCCEEEEeCcc
Confidence 345566778998 521 111123578889999999999997664
No 361
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=28.07 E-value=61 Score=24.51 Aligned_cols=54 Identities=2% Similarity=-0.193 Sum_probs=34.6
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
...+.+.+++++.++|-||.-....=.........+.+.+.+...+|+|.+--.
T Consensus 321 ~r~~~i~~~~~~~~~DGvI~~~~~~C~~~~~~~~~~~~~~~~~~gIP~l~ie~D 374 (408)
T 3o3m_A 321 RMTKYRVDSLVEGKCDGAFYHMNRSCKLMSLIQYEMQRRAAEETGLPYAGFDGD 374 (408)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEEESSCHHHHTTHHHHHHHHHHHHCCCEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCcccHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 446678889999999999986553322211111223345567789999988543
No 362
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=27.99 E-value=1.5e+02 Score=20.41 Aligned_cols=69 Identities=6% Similarity=-0.082 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecC--CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQG--DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g--~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+++.+.+.+.+.|.. +.+....+ +....+.+.....++|-||+...... ... -..+....+||+++-.
T Consensus 27 ~~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-------~~~-~~~l~~~~iPvV~i~~ 97 (288)
T 3gv0_A 27 QMVFGITEVLSTTQYH-LVVTPHIHAKDSMVPIRYILETGSADGVIISKIEPN-------DPR-VRFMTERNMPFVTHGR 97 (288)
T ss_dssp HHHHHHHHHHTTSSCE-EEECCBSSGGGTTHHHHHHHHHTCCSEEEEESCCTT-------CHH-HHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHcCCE-EEEecCCcchhHHHHHHHHHHcCCccEEEEecCCCC-------cHH-HHHHhhCCCCEEEECC
Confidence 4445555666777777 54433333 23355667677779998888643211 111 2345567899988854
No 363
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=27.96 E-value=1.5e+02 Score=20.49 Aligned_cols=77 Identities=12% Similarity=0.057 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 044140 18 HSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKATSICAKRE 97 (166)
Q Consensus 18 ~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (166)
.+...++.++++|. ..++ ...++|.-..+. . .+...+...+.+..+.+.+++.|
T Consensus 99 ~~~~~~~~~i~~a~-~lG~----~~v~~~~G~~~~--------------~-------~~~~~~~~~~~l~~l~~~a~~~G 152 (290)
T 3tva_A 99 SRVAEMKEISDFAS-WVGC----PAIGLHIGFVPE--------------S-------SSPDYSELVRVTQDLLTHAANHG 152 (290)
T ss_dssp HHHHHHHHHHHHHH-HHTC----SEEEECCCCCCC--------------T-------TSHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHH-HcCC----CEEEEcCCCCcc--------------c-------chHHHHHHHHHHHHHHHHHHHcC
Confidence 35567888888999 8888 666666421110 0 01223444555677777888888
Q ss_pred CCcccEEeecCCchhHHHHHHhhhC
Q 044140 98 VNDMPVHVMQGDPRNVMTEAVERFH 122 (166)
Q Consensus 98 i~~~~~~v~~g~~~~~I~~~a~~~~ 122 (166)
+. +-.+-.. +....+.+..+..+
T Consensus 153 v~-l~lE~~~-~~~~~~~~l~~~~~ 175 (290)
T 3tva_A 153 QA-VHLETGQ-ESADHLLEFIEDVN 175 (290)
T ss_dssp CE-EEEECCS-SCHHHHHHHHHHHC
T ss_pred CE-EEEecCC-CCHHHHHHHHHhcC
Confidence 87 5444432 34556666666554
No 364
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=27.94 E-value=1.6e+02 Score=20.75 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=27.5
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
..+.+.++..++..+|+|++--.=.....++ .....+-....+||+++-..
T Consensus 192 ~~g~eAl~~~~~~~~dlvl~D~~MPd~mdG~---e~~~~ir~~~~~piI~lT~~ 242 (286)
T 3n0r_A 192 ATRGEALEAVTRRTPGLVLADIQLADGSSGI---DAVKDILGRMDVPVIFITAF 242 (286)
T ss_dssp SSHHHHHHHHHHCCCSEEEEESCCTTSCCTT---TTTHHHHHHTTCCEEEEESC
T ss_pred CCHHHHHHHHHhCCCCEEEEcCCCCCCCCHH---HHHHHHHhcCCCCEEEEeCC
Confidence 3344555666678899999975421011111 11222222238999998653
No 365
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=27.91 E-value=90 Score=17.85 Aligned_cols=49 Identities=6% Similarity=0.044 Sum_probs=27.3
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMP 162 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 162 (166)
......+..++..+|+|++...-.+ .... ...+++-.. ..+|++++-..
T Consensus 35 ~~~~a~~~~~~~~~dlil~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (120)
T 1tmy_A 35 NGREAVEKYKELKPDIVTMDITMPE-MNGI---DAIKEIMKIDPNAKIIVCSAM 84 (120)
T ss_dssp SHHHHHHHHHHHCCSEEEEECSCGG-GCHH---HHHHHHHHHCTTCCEEEEECT
T ss_pred CHHHHHHHHHhcCCCEEEEeCCCCC-CcHH---HHHHHHHhhCCCCeEEEEeCC
Confidence 3445556666778999999865321 1111 123333332 35788888653
No 366
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=27.69 E-value=1.5e+02 Score=20.38 Aligned_cols=53 Identities=2% Similarity=-0.042 Sum_probs=32.0
Q ss_pred HHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHH
Q 044140 92 ICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVS 145 (166)
Q Consensus 92 ~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~ 145 (166)
.+++.|.. +-+.+-.+++.+.+..+..-..+|+|.+.+-..+...+.|..+..
T Consensus 109 ~i~~~G~k-~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l 161 (227)
T 1tqx_A 109 EIRDNNLW-CGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMM 161 (227)
T ss_dssp HHHTTTCE-EEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGH
T ss_pred HHHHcCCe-EEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHH
Confidence 55667777 655554467777777766533589998876544433333433333
No 367
>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}
Probab=27.53 E-value=2.1e+02 Score=22.03 Aligned_cols=92 Identities=7% Similarity=0.017 Sum_probs=51.3
Q ss_pred CCEEEEEEcCChh-HHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHH
Q 044140 6 KPIMMVAIDDSNH-SYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQK 84 (166)
Q Consensus 6 ~~~Ilv~vd~s~~-s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (166)
..++.|++|+.+. ...+.+++..++. .... .+..+-+-- +-.....-.
T Consensus 14 ~~~l~vaLD~~~~~~~~~~~~a~~~v~-~~~~----~v~~~Kvg~--------------------------~lf~~~G~~ 62 (453)
T 3qw4_B 14 RSLLCVGLDPRAKTAAAAVEECKRLIE-QTHE----YAAAYKPNA--------------------------AFFEFFGAE 62 (453)
T ss_dssp TCCEEEEECCCCSSHHHHHHHHHHHHH-HHGG----GCSEEEEBH--------------------------HHHHTTHHH
T ss_pred CCCEEEEeCCCcccccHHHHHHHHHHH-HhCC----cCcEEEEcH--------------------------HHHHhcCHH
Confidence 3568999998752 4556777777777 6544 444444421 111111112
Q ss_pred HHHHHHHHHHh--CCCCcccEEeecCCchhHHHHHHhh----hCCcEEEEc
Q 044140 85 VADKATSICAK--REVNDMPVHVMQGDPRNVMTEAVER----FHPTILVLG 129 (166)
Q Consensus 85 ~l~~~~~~~~~--~~i~~~~~~v~~g~~~~~I~~~a~~----~~~dliV~g 129 (166)
.++.+.+.+.. .|.. +-.....+|..+....+++. .++|++-+-
T Consensus 63 ~v~~L~~~~~~~~~g~~-VflDlK~~DIpnT~~~~a~~~~~~lg~d~vTvh 112 (453)
T 3qw4_B 63 GWAALSEVIRAVPAGIP-VVLDAKRGDIADTADAYATSAFKHLNAHAITAS 112 (453)
T ss_dssp HHHHHHHHHHTSCTTSC-BEEEEEECCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred HHHHHHHHHHhhcCCCe-EEEEeecCChHHHHHHHHHHHHHHcCCCEEEEc
Confidence 22222222211 3666 77777778888777666543 568888774
No 368
>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}
Probab=27.45 E-value=1.4e+02 Score=20.70 Aligned_cols=44 Identities=14% Similarity=0.097 Sum_probs=26.7
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhh--hCCcEEEEccc
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDPRNVMTEAVER--FHPTILVLGSH 131 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~--~~~dliV~g~~ 131 (166)
+.++++...+.|.. +.+.+--| ....-+..+.+ .++|.+|+|+.
T Consensus 174 i~~lr~~~~~~~~~-~~I~vdGG-I~~~~~~~~~~~~aGad~~VvGSa 219 (237)
T 3cu2_A 174 VIQVEKRLGNRRVE-KLINIDGS-MTLELAKYFKQGTHQIDWLVSGSA 219 (237)
T ss_dssp HHHHHHHHGGGGGG-CEEEEESS-CCHHHHHHHHHSSSCCCCEEECGG
T ss_pred HHHHHHHHHhcCCC-ceEEEECC-cCHHHHHHHHHhCCCCcEEEEeeH
Confidence 44555565555555 55555444 43444444555 69999999976
No 369
>3nq4_A 6,7-dimethyl-8-ribityllumazine synthase; 30MER, icosahedral, flavodoxin like fold, transferase, DMRL riboflavin biosynthesis, drug targe; 3.50A {Salmonella typhimurium} PDB: 3mk3_A
Probab=27.28 E-value=1.3e+02 Score=19.54 Aligned_cols=77 Identities=18% Similarity=0.132 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhCC-CC--cccEEeecC--CchhHHHHHHhhhCCcEEEE-ccc--CCccchhhhcccHHHHHhh---
Q 044140 82 AQKVADKATSICAKRE-VN--DMPVHVMQG--DPRNVMTEAVERFHPTILVL-GSH--GYGAVKRAVLGSVSDYSAH--- 150 (166)
Q Consensus 82 ~~~~l~~~~~~~~~~~-i~--~~~~~v~~g--~~~~~I~~~a~~~~~dliV~-g~~--~~~~~~~~~~gs~~~~l~~--- 150 (166)
.+.+++.+.+.+.+.| +. ++++..+.| +..-.+.+.++..++|-||. |.- |.+.--.+....++.-|++
T Consensus 27 ~~~Ll~gA~~~l~~~G~v~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~Gl~~v~L 106 (156)
T 3nq4_A 27 NDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLASVAQ 106 (156)
T ss_dssp HHHHHHHHHHHHHHTTCCCTTSEEEEEESSTTTHHHHHHHHHHHCSCSEEEEEEEEECCSSTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccceEEEEcCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHHHHHHHHHHHHHHHHh
Confidence 4456677777778888 63 155555567 77777778888888987764 542 4333334445555555544
Q ss_pred cCCccEEE
Q 044140 151 HCSCTVMI 158 (166)
Q Consensus 151 ~~~~pVlv 158 (166)
+...||..
T Consensus 107 ~~~vPV~~ 114 (156)
T 3nq4_A 107 DSGVPVAF 114 (156)
T ss_dssp HHCCCEEE
T ss_pred ccCCCEEE
Confidence 45677653
No 370
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=27.19 E-value=1.1e+02 Score=21.22 Aligned_cols=18 Identities=17% Similarity=0.069 Sum_probs=9.3
Q ss_pred hHHHHHHhhhCCcEEEEc
Q 044140 112 NVMTEAVERFHPTILVLG 129 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g 129 (166)
..+++...+.++|.|.+.
T Consensus 33 ~~~a~~~~~~Ga~~i~v~ 50 (266)
T 2w6r_A 33 RDWVVEVEKRGAGEILLT 50 (266)
T ss_dssp HHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHCCCCEEEEE
Confidence 344444455556665553
No 371
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=27.10 E-value=1e+02 Score=21.45 Aligned_cols=56 Identities=9% Similarity=0.167 Sum_probs=33.6
Q ss_pred EeecCCc----hhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 104 HVMQGDP----RNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 104 ~v~~g~~----~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
++.-|+| ...+++...+.++|+|.+|-...-.... .+ ...+.+ +....|+++.+..
T Consensus 11 ~it~gDP~~~~t~~~~~~l~~~GaD~IelG~S~g~t~~~-~~-~~v~~i-r~~~~Pivl~~y~ 70 (234)
T 2f6u_A 11 HITKLDPDRTNTDEIIKAVADSGTDAVMISGTQNVTYEK-AR-TLIEKV-SQYGLPIVVEPSD 70 (234)
T ss_dssp EEEEECTTSCCCHHHHHHHHTTTCSEEEECCCTTCCHHH-HH-HHHHHH-TTSCCCEEECCSS
T ss_pred EEEeeCCCccccHHHHHHHHHcCCCEEEECCCCCCCHHH-HH-HHHHHh-cCCCCCEEEecCC
Confidence 3444554 3456778888899999999632212222 22 233444 3468999998764
No 372
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=27.01 E-value=1.1e+02 Score=18.40 Aligned_cols=41 Identities=7% Similarity=0.118 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCC
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGY 133 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~ 133 (166)
.+.+.+.+.+.|++ ++..-+..... .+-..+|.||+|+..+
T Consensus 17 a~~i~~~l~~~g~~-v~~~~~~~~~~------~~l~~~d~vi~g~p~y 57 (137)
T 2fz5_A 17 ANEIEAAVKAAGAD-VESVRFEDTNV------DDVASKDVILLGCPAM 57 (137)
T ss_dssp HHHHHHHHHHTTCC-EEEEETTSCCH------HHHHTCSEEEEECCCB
T ss_pred HHHHHHHHHhCCCe-EEEEEcccCCH------HHHhcCCEEEEEcccc
Confidence 34444445555666 55433222111 1224899999998765
No 373
>4drs_A Pyruvate kinase; glycolysis, allosteric EN transferase; 2.50A {Cryptosporidium parvum} PDB: 3ma8_A*
Probab=26.77 E-value=1.4e+02 Score=23.70 Aligned_cols=44 Identities=9% Similarity=0.105 Sum_probs=32.6
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcC-CccEEEEcC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHC-SCTVMIVKM 161 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~-~~pVlvv~~ 161 (166)
..+.+.+..|.+.++..||.-+.+ |.++..+.+.- +||++.+-+
T Consensus 411 aia~aa~~~A~~l~a~aIv~~T~s---------G~tA~~iSr~RP~~pI~a~T~ 455 (526)
T 4drs_A 411 AIACSAVESAHDVNAKLIITITET---------GNTARLISKYRPSQTIIACTA 455 (526)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECSS---------SHHHHHHHHTCCSSEEEEEES
T ss_pred HHHHHHHHHHHhCCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEECC
Confidence 345667788899999999986653 66677777765 599998865
No 374
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=26.76 E-value=95 Score=17.73 Aligned_cols=50 Identities=8% Similarity=0.027 Sum_probs=28.2
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 162 (166)
..........++..+|++++...-.+ .... .....+-.. ..+|++++-..
T Consensus 31 ~~~~~a~~~~~~~~~dlil~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 81 (121)
T 2pl1_A 31 EDAKEADYYLNEHIPDIAIVDLGLPD-EDGL---SLIRRWRSNDVSLPILVLTAR 81 (121)
T ss_dssp SSHHHHHHHHHHSCCSEEEECSCCSS-SCHH---HHHHHHHHTTCCSCEEEEESC
T ss_pred CCHHHHHHHHhccCCCEEEEecCCCC-CCHH---HHHHHHHhcCCCCCEEEEecC
Confidence 33455566667778999999755322 1111 123333332 35888888653
No 375
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=26.67 E-value=54 Score=21.86 Aligned_cols=51 Identities=12% Similarity=-0.013 Sum_probs=30.2
Q ss_pred CCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh--cCCccEEEEcCC
Q 044140 108 GDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH--HCSCTVMIVKMP 162 (166)
Q Consensus 108 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~--~~~~pVlvv~~~ 162 (166)
.+..+++...+++..+|+|++.-.-.+ ..++ .....+-. ...+||+++-..
T Consensus 40 ~~~~~~~~~~~~~~~~dlvllD~~mp~-~~G~---~~~~~lr~~~~~~~~ii~lt~~ 92 (225)
T 3klo_A 40 FSELWLEENKPESRSIQMLVIDYSRIS-DDVL---TDYSSFKHISCPDAKEVIINCP 92 (225)
T ss_dssp GGGHHHHTTCSGGGGCCEEEEEGGGCC-HHHH---HHHHHHHHHHCTTCEEEEEEEC
T ss_pred CCcHHHHHHHhhccCCCEEEEeCCCCC-CCHH---HHHHHHHHhhCCCCcEEEEECC
Confidence 455666666677789999999855222 1111 12333333 456899988643
No 376
>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}
Probab=26.65 E-value=1.2e+02 Score=21.86 Aligned_cols=41 Identities=7% Similarity=-0.139 Sum_probs=26.3
Q ss_pred CCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHH-HhhcCCccEE
Q 044140 108 GDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDY-SAHHCSCTVM 157 (166)
Q Consensus 108 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~-l~~~~~~pVl 157 (166)
|+......+....+.+|.||+-....+.. +. +.+++++||+
T Consensus 76 gEsl~DTarvls~~~~D~iviR~~~~~~~---------~~~la~~~~vPVI 117 (291)
T 3d6n_B 76 GESFFDTLKTFEGLGFDYVVFRVPFVFFP---------YKEIVKSLNLRLV 117 (291)
T ss_dssp TCCHHHHHHHHHHTTCSEEEEEESSCCCS---------CHHHHHTCSSEEE
T ss_pred CCcHHHHHHHHHHhcCCEEEEEcCChHHH---------HHHHHHhCCCCEE
Confidence 44444455555566689999976654433 34 5678889986
No 377
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=26.62 E-value=52 Score=24.81 Aligned_cols=27 Identities=4% Similarity=-0.101 Sum_probs=22.0
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCceEEEEEEe
Q 044140 16 SNHSYYALEWALDYFFPPFAPNHTFQLVLIHA 47 (166)
Q Consensus 16 s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v 47 (166)
...+++..++|+++|+ .+.. +|+++|=
T Consensus 178 r~~~eRIar~AFe~A~-~rrk----kVT~v~K 204 (375)
T 3vmk_A 178 RKEIRRIAKIAFESAQ-GRRK----KVTSVDK 204 (375)
T ss_dssp HHHHHHHHHHHHHHHH-TTTS----EEEEEEC
T ss_pred HHHHHHHHHHHHHHHH-HcCC----cEEEEEC
Confidence 3578999999999999 6655 8888874
No 378
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A
Probab=26.57 E-value=1.4e+02 Score=23.51 Aligned_cols=44 Identities=11% Similarity=0.121 Sum_probs=32.1
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcC-CccEEEEcC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHC-SCTVMIVKM 161 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~-~~pVlvv~~ 161 (166)
..+.+.+..|.+.++..||.-+.+ |.++..+.+.- +||++.+-+
T Consensus 396 aia~aa~~~A~~l~a~aIv~~T~S---------G~tA~~iSr~RP~~PIia~T~ 440 (511)
T 3gg8_A 396 AVARAAVETAECVNAAIILALTET---------GQTARLIAKYRPMQPILALSA 440 (511)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECSS---------SHHHHHHHHTCCSSCEEEEES
T ss_pred HHHHHHHHHHHhcCCCEEEEECCC---------chHHHHHHhhCCCCCEEEEcC
Confidence 345666777889999999887653 56677777765 499998854
No 379
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=26.53 E-value=1.2e+02 Score=22.01 Aligned_cols=42 Identities=14% Similarity=0.163 Sum_probs=28.5
Q ss_pred HHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccC
Q 044140 88 KATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~ 132 (166)
.+.+.+.+.|++ +.. ...-...++.+..++.++|++|+...+
T Consensus 49 ~v~~~A~~~gIp-v~~--~~~~~~~~~~~~l~~~~~Dliv~~~~~ 90 (314)
T 3tqq_A 49 PVKEIARQNEIP-IIQ--PFSLRDEVEQEKLIAMNADVMVVVAYG 90 (314)
T ss_dssp HHHHHHHHTTCC-EEC--CSCSSSHHHHHHHHTTCCSEEEEESCC
T ss_pred HHHHHHHHcCCC-EEC--cccCCCHHHHHHHHhcCCCEEEEcCcc
Confidence 455666778988 421 111123478888999999999998664
No 380
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}
Probab=26.53 E-value=1.4e+02 Score=23.61 Aligned_cols=43 Identities=14% Similarity=0.267 Sum_probs=31.7
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCC-ccEEEEcC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCS-CTVMIVKM 161 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv~~ 161 (166)
.+.+.++.|...++..||.-+.+ |.++..+.+.-| ||++.+-+
T Consensus 406 ia~aa~~~A~~l~a~aIv~~T~S---------G~TA~~vSr~RP~~PIia~T~ 449 (520)
T 3khd_A 406 VARSAVETAESIQASLIIALTET---------GYTARLIAKYKPSCTILALSA 449 (520)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSS---------SHHHHHHHHTCCSSEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------cHHHHHHHhcCCCCCEEEEcC
Confidence 45556677888899999887653 667777777654 99998854
No 381
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=26.39 E-value=85 Score=21.39 Aligned_cols=49 Identities=8% Similarity=-0.108 Sum_probs=29.1
Q ss_pred hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 112 NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.+.++.+.+.++|.|++-.........-+--....++....++||+..-
T Consensus 152 ~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~G 200 (244)
T 2y88_A 152 WDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASG 200 (244)
T ss_dssp HHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEES
T ss_pred HHHHHHHHhCCCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEEC
Confidence 5666777778899887654433222111112345667777789988753
No 382
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=26.39 E-value=1e+02 Score=18.09 Aligned_cols=48 Identities=4% Similarity=-0.070 Sum_probs=27.0
Q ss_pred hhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh-cCCccEEEEcCC
Q 044140 111 RNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH-HCSCTVMIVKMP 162 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~~ 162 (166)
....++..++..+|+|++...-.+ .... .....+-. ...+|++++-..
T Consensus 36 ~~~al~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 84 (132)
T 3crn_A 36 AGEGLAKIENEFFNLALFXIKLPD-MEGT---ELLEKAHKLRPGMKKIMVTGY 84 (132)
T ss_dssp HHHHHHHHHHSCCSEEEECSBCSS-SBHH---HHHHHHHHHCTTSEEEEEESC
T ss_pred HHHHHHHHhcCCCCEEEEecCCCC-CchH---HHHHHHHhhCCCCcEEEEecc
Confidence 445556667778999999865322 1111 12333332 245888888643
No 383
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=26.37 E-value=1.4e+02 Score=19.41 Aligned_cols=13 Identities=23% Similarity=0.069 Sum_probs=10.6
Q ss_pred CCcEEEEcccCCc
Q 044140 122 HPTILVLGSHGYG 134 (166)
Q Consensus 122 ~~dliV~g~~~~~ 134 (166)
.+|.||+|+.-+.
T Consensus 52 ~aD~ii~gsP~y~ 64 (188)
T 2ark_A 52 WADGLAVGSPTNM 64 (188)
T ss_dssp HCSEEEEEEECBT
T ss_pred hCCEEEEEeCccC
Confidence 7899999987653
No 384
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase, allosteric enzyme, binding, glycolysis, magnesium, metal-binding, NUCL binding; 2.00A {Leishmania mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A* 3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3srk_A* 3e0w_A 3e0v_A 3pp7_A* 3qv9_A*
Probab=26.35 E-value=1.5e+02 Score=23.39 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=32.1
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCC-ccEEEEcC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCS-CTVMIVKM 161 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv~~ 161 (166)
..+.+.++.|.+.++..||.-+.+ |.++..+.+.-| ||++.+-+
T Consensus 380 aia~aa~~~A~~l~a~aIv~~T~S---------G~tA~~isr~RP~~pIia~T~ 424 (499)
T 3hqn_D 380 AVCSSAVNSVYETKAKAMVVLSNT---------GRSARLVAKYRPNCPIVCVTT 424 (499)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECSS---------SHHHHHHHHTCCSSCEEEEES
T ss_pred HHHHHHHHHHHhcCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEcC
Confidence 345566677888999999987653 667777777654 99998854
No 385
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=26.35 E-value=1.5e+02 Score=19.96 Aligned_cols=51 Identities=8% Similarity=0.066 Sum_probs=29.1
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMPK 163 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~~ 163 (166)
......++..++..+|+|++.-.-.+ ...+ .....+-.. ..+||+++-...
T Consensus 54 ~~~~~al~~~~~~~~dlvllD~~lp~-~~g~---~~~~~lr~~~~~~~ii~lt~~~ 105 (250)
T 3r0j_A 54 TNGAQALDRARETRPDAVILDVXMPG-MDGF---GVLRRLRADGIDAPALFLTARD 105 (250)
T ss_dssp SSHHHHHHHHHHHCCSEEEEESCCSS-SCHH---HHHHHHHHTTCCCCEEEEECST
T ss_pred CCHHHHHHHHHhCCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCCEEEEECCC
Confidence 34455566677789999999855222 1111 123333333 358999886543
No 386
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=26.30 E-value=1.1e+02 Score=21.25 Aligned_cols=65 Identities=5% Similarity=-0.025 Sum_probs=37.0
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCch--hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDPR--NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
+..+.+.+.+.|.. +......++.. ..+++.....++|-||+....... .-..+....+||+++-
T Consensus 33 ~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~---------~~~~~~~~~iPvV~~~ 99 (301)
T 3miz_A 33 VRGIQDWANANGKT-ILIANTGGSSEREVEIWKMFQSHRIDGVLYVTMYRRI---------VDPESGDVSIPTVMIN 99 (301)
T ss_dssp HHHHHHHHHHTTCE-EEEEECTTCHHHHHHHHHHHHHTTCSEEEEEEEEEEE---------CCCCCTTCCCCEEEEE
T ss_pred HHHHHHHHHHCCCE-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEecCCccH---------HHHHHHhCCCCEEEEC
Confidence 34455556666777 55444434433 345666667789988886432211 1123445678888773
No 387
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=26.10 E-value=1.1e+02 Score=18.18 Aligned_cols=48 Identities=10% Similarity=0.137 Sum_probs=26.3
Q ss_pred hhHHHHHHhh------hCCcEEEEcccCCccchhhhcccHHHHHhhc---CCccEEEEcCC
Q 044140 111 RNVMTEAVER------FHPTILVLGSHGYGAVKRAVLGSVSDYSAHH---CSCTVMIVKMP 162 (166)
Q Consensus 111 ~~~I~~~a~~------~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~~ 162 (166)
.....+..++ ..+|+|++...-.+ ...+ .....+-.. ..+|++++-..
T Consensus 42 ~~~a~~~l~~~~~~~~~~~dlii~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~ls~~ 98 (143)
T 2qvg_A 42 GNQALDMLYGRNKENKIHPKLILLDINIPK-MNGI---EFLKELRDDSSFTDIEVFVLTAA 98 (143)
T ss_dssp HHHHHHHHHTCTTCCCCCCSEEEEETTCTT-SCHH---HHHHHHTTSGGGTTCEEEEEESC
T ss_pred HHHHHHHHHhcccccCCCCCEEEEecCCCC-CCHH---HHHHHHHcCccccCCcEEEEeCC
Confidence 4444555554 68999999865322 1111 123333333 46888888543
No 388
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=25.99 E-value=1.6e+02 Score=22.15 Aligned_cols=95 Identities=9% Similarity=0.104 Sum_probs=51.5
Q ss_pred EEEEEEcCChhHHHHHHHHHHhcCCCCCCCC----------ceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHH
Q 044140 8 IMMVAIDDSNHSYYALEWALDYFFPPFAPNH----------TFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELD 77 (166)
Q Consensus 8 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~----------~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (166)
||-|.+.....|+..++.+.++.+ .++.-+ ...=.++|+..+.+..
T Consensus 14 ~igi~t~t~s~se~t~~~a~~~i~-~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~----------------------- 69 (371)
T 3qi7_A 14 KVAVVTQPLSENKVQYNMVEEMAK-EYEEENKIDKDKDGQTKVKQTIKHVVLPENFT----------------------- 69 (371)
T ss_dssp EEEEEECCTTTCHHHHHHHHHHHH-HHHHHTTCCC-----CCCCEEEEEEECCTTGG-----------------------
T ss_pred EEEEEcCCcCCCHHHHHHHHHHHH-HhCCCcccchhcccccccceEEEEeccCCCch-----------------------
Confidence 677777776666666666666665 433200 0013477775332221
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCcccEEeecC-Cc-hhHHHHHHhhhCCcEEEEccc
Q 044140 78 TKKRAQKVADKATSICAKREVNDMPVHVMQG-DP-RNVMTEAVERFHPTILVLGSH 131 (166)
Q Consensus 78 ~~~~~~~~l~~~~~~~~~~~i~~~~~~v~~g-~~-~~~I~~~a~~~~~dliV~g~~ 131 (166)
...+..++.+...+...++. ..+... .+ ....++..++.+.|.|+++..
T Consensus 70 --se~~ttI~~I~~~a~~~gyk---~II~n~~~~~~~~~i~~lkekrvDgIIi~~~ 120 (371)
T 3qi7_A 70 --SNIDSAINKIVKLADDKEVQ---AIVVSTDQAGLLPALQKVKEKRPEIITISAP 120 (371)
T ss_dssp --GGHHHHHHHHHGGGGCTTEE---EEEEECSSCCCHHHHHHHHHHCTTSEEEESS
T ss_pred --HHHHHHHHHHHHHhhcCCCe---EEEEECCCcchHHHHHHHHhcCCCEEEEecc
Confidence 01112345555555555554 333332 22 356788888889998887654
No 389
>1c2y_A Protein (lumazine synthase); riboflavin biosynthesis, transferase; HET: LMZ; 3.30A {Spinacia oleracea} SCOP: c.16.1.1
Probab=25.89 E-value=1.4e+02 Score=19.40 Aligned_cols=77 Identities=18% Similarity=0.151 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhCCCC-cccEEeecC--CchhHHHHHHhhhCCcEEEE-ccc--CCccchhhhcccHHHHHhh---cC
Q 044140 82 AQKVADKATSICAKREVN-DMPVHVMQG--DPRNVMTEAVERFHPTILVL-GSH--GYGAVKRAVLGSVSDYSAH---HC 152 (166)
Q Consensus 82 ~~~~l~~~~~~~~~~~i~-~~~~~v~~g--~~~~~I~~~a~~~~~dliV~-g~~--~~~~~~~~~~gs~~~~l~~---~~ 152 (166)
.+.+++.+.+.+.+.|+. ++++..+.| +..-.+.+.++..++|-||. |.= |...--.+....++.-|++ +.
T Consensus 28 ~~~Ll~ga~~~l~~~Gv~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~v~~gl~~v~L~~ 107 (156)
T 1c2y_A 28 TRRLMEGALDTFKKYSVNEDIDVVWVPGAYELGVTAQALGKSGKYHAIVCLGAVVKGDTSHYDAVVNSASSGVLSAGLNS 107 (156)
T ss_dssp HHHHHHHHHHHHHHTTCCSCCEEEEESSHHHHHHHHHHHHHTTCCSEEEEEEECCCCSSTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEECCcHHHHHHHHHHHHhcCCCCEEEEecccccCCchHHHHHHHHHHHHHHHHHhhc
Confidence 345667777777888863 255555667 66677778888888987765 543 3333333444555555544 45
Q ss_pred CccEEE
Q 044140 153 SCTVMI 158 (166)
Q Consensus 153 ~~pVlv 158 (166)
..||..
T Consensus 108 ~vPV~~ 113 (156)
T 1c2y_A 108 GVPCVF 113 (156)
T ss_dssp TSCEEE
T ss_pred CCCEEE
Confidence 677764
No 390
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=25.88 E-value=1.7e+02 Score=20.26 Aligned_cols=69 Identities=7% Similarity=-0.014 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecC-CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQG-DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
..+..+.+.+.+.|.. +......+ .....+.+.....++|-||+....... ..-..+....+||+++-.
T Consensus 27 ~~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~~~~ 96 (294)
T 3qk7_A 27 EMISWIGIELGKRGLD-LLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQPED--------FRLQYLQKQNFPFLALGR 96 (294)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCSSC--------HHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHCCCE-EEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCCCh--------HHHHHHHhCCCCEEEECC
Confidence 3445555566667877 55544332 345567788878899999986543221 112345667899988854
No 391
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=25.82 E-value=1.8e+02 Score=20.54 Aligned_cols=106 Identities=13% Similarity=0.055 Sum_probs=57.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044140 16 SNHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKATSICAK 95 (166)
Q Consensus 16 s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 95 (166)
..+-..+++++-.++. . ++ .+.-...+.+.+..+.+.+ . . ++-+..+.+.+++
T Consensus 33 ~~~~e~a~~~a~~l~~-~-Ga----~~vk~~~fkprts~~~~~g------~----~-----------~egl~~l~~~~~~ 85 (262)
T 1zco_A 33 IESREQIMKVAEFLAE-V-GI----KVLRGGAFKPRTSPYSFQG------Y----G-----------EKALRWMREAADE 85 (262)
T ss_dssp CCCHHHHHHHHHHHHH-T-TC----CEEECBSSCCCSSTTSCCC------C----T-----------HHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-c-CC----CEEEEEecccCCCcccccC------c----c-----------HHHHHHHHHHHHH
Confidence 3456777888877776 4 55 5444444433222111111 0 0 2334555666677
Q ss_pred CCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 96 REVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 96 ~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.|++ +-..+.. +.. ++++.+. +|.+=+|++.-.... + -.++.+ .++||++=..
T Consensus 86 ~Gl~-~~te~~d--~~~--~~~l~~~-vd~~kIga~~~~n~~--l----l~~~a~-~~kPV~lk~G 138 (262)
T 1zco_A 86 YGLV-TVTEVMD--TRH--VELVAKY-SDILQIGARNSQNFE--L----LKEVGK-VENPVLLKRG 138 (262)
T ss_dssp HTCE-EEEECCC--GGG--HHHHHHH-CSEEEECGGGTTCHH--H----HHHHTT-SSSCEEEECC
T ss_pred cCCc-EEEeeCC--HHh--HHHHHhh-CCEEEECcccccCHH--H----HHHHHh-cCCcEEEecC
Confidence 7988 5554433 332 4555556 899999987543321 1 223333 6788877543
No 392
>1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1
Probab=25.73 E-value=1.8e+02 Score=23.31 Aligned_cols=42 Identities=10% Similarity=0.148 Sum_probs=27.8
Q ss_pred HHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccC
Q 044140 88 KATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~ 132 (166)
.+.+.+.+.|++ +.. ...-...++++..++.++|+||+...+
T Consensus 44 ~~~~~a~~~~ip-~~~--~~~~~~~~~~~~l~~~~~d~iv~~~~~ 85 (660)
T 1z7e_A 44 SVARLAAERGIP-VYA--PDNVNHPLWVERIAQLSPDVIFSFYYR 85 (660)
T ss_dssp CHHHHHHHHTCC-EEC--CSCTTSHHHHHHHHHHCCSEEEEESCC
T ss_pred HHHHHHHHcCCC-Eec--cCCCCcHHHHHHHHhcCCCEEEEcCcc
Confidence 345556677888 422 222223467888899999999997653
No 393
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=25.66 E-value=99 Score=17.59 Aligned_cols=49 Identities=6% Similarity=0.017 Sum_probs=26.7
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
+..+.+ ....+..+|++++...-.+ ...+ .....+-....+|++++-..
T Consensus 33 ~~~~~~-~~~~~~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~ii~~s~~ 81 (121)
T 1zh2_A 33 TLQRGL-LEAATRKPDLIILDLGLPD-GDGI---EFIRDLRQWSAVPVIVLSAR 81 (121)
T ss_dssp SHHHHH-HHHHHHCCSEEEEESEETT-EEHH---HHHHHHHTTCCCCEEEEESC
T ss_pred CHHHHH-HHHhcCCCCEEEEeCCCCC-CcHH---HHHHHHHhCCCCcEEEEECC
Confidence 444444 4455668999999754222 1111 12334433456888888543
No 394
>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1
Probab=25.66 E-value=1.3e+02 Score=21.89 Aligned_cols=40 Identities=18% Similarity=0.319 Sum_probs=24.6
Q ss_pred CCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEE
Q 044140 108 GDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVM 157 (166)
Q Consensus 108 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVl 157 (166)
|+......+....+ +|.||+-....+ ..+.+..++.+||+
T Consensus 87 gEsl~DTarvls~~-~D~iviR~~~~~---------~~~~la~~~~vPVI 126 (308)
T 1ml4_A 87 GESLRDTIKTVEQY-CDVIVIRHPKEG---------AARLAAEVAEVPVI 126 (308)
T ss_dssp TCCHHHHHHHHTTT-CSEEEEEESSTT---------HHHHHHHTCSSCEE
T ss_pred CCCHHHHHHHHHHh-CcEEEEecCChh---------HHHHHHHhCCCCEE
Confidence 33333334444444 899999655432 34667788999986
No 395
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=25.61 E-value=1.1e+02 Score=17.95 Aligned_cols=52 Identities=2% Similarity=-0.029 Sum_probs=27.5
Q ss_pred CCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc---CCccEEEEcCCC
Q 044140 108 GDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH---CSCTVMIVKMPK 163 (166)
Q Consensus 108 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~~~ 163 (166)
.+..+++........+|+|++...-.+ ...+ ...+++-.. ..+||+++-...
T Consensus 37 ~~~~~a~~~~~~~~~~dlvi~D~~~p~-~~g~---~~~~~lr~~~~~~~~pii~~s~~~ 91 (129)
T 3h1g_A 37 EHGVEAWEKLDANADTKVLITDWNMPE-MNGL---DLVKKVRSDSRFKEIPIIMITAEG 91 (129)
T ss_dssp SSHHHHHHHHHHCTTCCEEEECSCCSS-SCHH---HHHHHHHTSTTCTTCCEEEEESCC
T ss_pred CCHHHHHHHHHhCCCCCEEEEeCCCCC-CCHH---HHHHHHHhcCCCCCCeEEEEeCCC
Confidence 445555544444457999999754221 1111 123333332 358999886543
No 396
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=25.51 E-value=38 Score=20.53 Aligned_cols=43 Identities=12% Similarity=0.057 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCCcccEEeecC-CchhHHH-HHHhhhCCcEEEEcccCC
Q 044140 88 KATSICAKREVNDMPVHVMQG-DPRNVMT-EAVERFHPTILVLGSHGY 133 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v~~g-~~~~~I~-~~a~~~~~dliV~g~~~~ 133 (166)
.+.+.+++.|++ ++++.... .+.+.|. +.++ .+|+||+.....
T Consensus 24 aLekaA~~~G~~-ikVEtqgs~g~~n~Lt~~~I~--~AD~VIia~d~~ 68 (106)
T 2m1z_A 24 ALKKGAKKMGNL-IKVETQGATGIENELTEKDVN--IGEVVIFAVDTK 68 (106)
T ss_dssp HHHHHHHHHTCE-EEEEEEETTEESSCCCHHHHH--HCSEEEEEESSC
T ss_pred HHHHHHHHCCCE-EEEEEecCccccCCCCHHHHh--hCCEEEEecccc
Confidence 444455566877 77666443 2233332 3344 899999997643
No 397
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=25.51 E-value=1.6e+02 Score=20.08 Aligned_cols=68 Identities=9% Similarity=-0.034 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCc--hhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDP--RNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~--~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.++.+.+.+.+.|.. +.......+. ...+++.....++|-||+...... .-.-..+....+||+++-.
T Consensus 31 ~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~--------~~~~~~l~~~~iPvV~~~~ 100 (292)
T 3k4h_A 31 VIRGISSFAHVEGYA-LYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSREN--------DRIIQYLHEQNFPFVLIGK 100 (292)
T ss_dssp HHHHHHHHHHHTTCE-EEECCCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT--------CHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHcCCE-EEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC--------hHHHHHHHHCCCCEEEECC
Confidence 344455555666766 4332222222 234566666678888887543211 1122345566888888743
No 398
>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*
Probab=25.37 E-value=1.3e+02 Score=21.80 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=26.4
Q ss_pred cCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEE
Q 044140 107 QGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMI 158 (166)
Q Consensus 107 ~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 158 (166)
.|+......+....+ +|.||+-....+ ..+.+.+++++||+=
T Consensus 80 kgEsl~DTarvls~~-~D~iviR~~~~~---------~~~~la~~~~vPVIN 121 (299)
T 1pg5_A 80 KGENLADTIRMLNNY-SDGIVMRHKYDG---------ASRFASEISDIPVIN 121 (299)
T ss_dssp -CCCHHHHHHHHHHH-CSEEEEEESSBT---------HHHHHHHHCSSCEEE
T ss_pred CCCCHHHHHHHHHHh-CCEEEEeCCChh---------HHHHHHHhCCCCEEe
Confidence 344444555555555 899999655332 345677888999863
No 399
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=25.31 E-value=1.8e+02 Score=20.57 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=28.6
Q ss_pred hhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 111 RNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.++...+...+-|+|++..-.. ..-. .....+.+...+|..+|+.
T Consensus 129 vneVtKaIekgKAqLVVIA~DvdP-ielv---~~LPaLCee~~VPY~~V~s 175 (255)
T 4a17_F 129 LNHITTLIENKQAKLVVIAHDVDP-IELV---IFLPQLCRKNDVPFAFVKG 175 (255)
T ss_dssp HHHHHHHHHTSCCSEEEEESCCSS-THHH---HHHHHHHHHTTCCEEEESC
T ss_pred hHHHHHHHHcCCceEEEEeCCCCh-HHHH---HHHHHHHHHcCCCEEEECC
Confidence 567788888889999999865322 1110 1123455566777777664
No 400
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=25.22 E-value=78 Score=22.38 Aligned_cols=29 Identities=7% Similarity=0.035 Sum_probs=23.0
Q ss_pred ccEEeecCCchhHHHHHHhhhCCcEEEEc
Q 044140 101 MPVHVMQGDPRNVMTEAVERFHPTILVLG 129 (166)
Q Consensus 101 ~~~~v~~g~~~~~I~~~a~~~~~dliV~g 129 (166)
++..++.-++..++++.|.+.++||||.=
T Consensus 38 V~~I~~alD~t~~vi~eAi~~gadlIitH 66 (267)
T 2fyw_A 38 IQRVMVALDIREETVAEAIEKGVDLIIVK 66 (267)
T ss_dssp CSEEEEESCCCHHHHHHHHHTTCSEEEES
T ss_pred cCEEEEEEcCCHHHHHHHHHCCCCEEEEC
Confidence 44444445889999999999999999984
No 401
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=25.18 E-value=1.3e+02 Score=23.38 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=30.8
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcC-CccEEEEcC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHC-SCTVMIVKM 161 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~-~~pVlvv~~ 161 (166)
.+...++.|.+.++..||.-+.+ |.++..+.+.- +||++.+-+
T Consensus 358 ia~aa~~~a~~l~a~aIv~~T~s---------G~ta~~isr~RP~~pI~a~t~ 401 (470)
T 1e0t_A 358 VCRGAVETAEKLDAPLIVVATQG---------GKSARAVRKYFPDATILALTT 401 (470)
T ss_dssp HHHHHHHHHHHTTCSBEEEECSS---------SHHHHHHHTTCCSSBEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------hhHHHHHHhhCCCCCEEEECC
Confidence 45666677888899988876542 56666777765 499998854
No 402
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=25.08 E-value=58 Score=24.72 Aligned_cols=27 Identities=4% Similarity=0.011 Sum_probs=22.1
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCceEEEEEEe
Q 044140 16 SNHSYYALEWALDYFFPPFAPNHTFQLVLIHA 47 (166)
Q Consensus 16 s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v 47 (166)
...+++..++|+++|+ .+.. +|+++|=
T Consensus 185 r~~~eRIar~AFe~A~-~rrk----kVT~v~K 211 (390)
T 3u1h_A 185 REEIERIIRKAFELAL-TRKK----KVTSVDK 211 (390)
T ss_dssp HHHHHHHHHHHHHHHH-TTTS----EEEEEEC
T ss_pred HHHHhHHHHHHHHHHH-HcCC----ceEEEEC
Confidence 3578999999999999 6655 8988874
No 403
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=25.07 E-value=86 Score=21.49 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcc
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGS 130 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~ 130 (166)
++.+++.+.+.|+. -.+.+..|+..+.+-.......+|+|++..
T Consensus 101 ~~~a~~~~~~~g~~-~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~ 144 (248)
T 3tfw_A 101 AQVARENLQLAGVD-QRVTLREGPALQSLESLGECPAFDLIFIDA 144 (248)
T ss_dssp HHHHHHHHHHTTCT-TTEEEEESCHHHHHHTCCSCCCCSEEEECS
T ss_pred HHHHHHHHHHcCCC-CcEEEEEcCHHHHHHhcCCCCCeEEEEECC
Confidence 44455555666766 456677787765544332234789999864
No 404
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=25.03 E-value=58 Score=24.42 Aligned_cols=28 Identities=7% Similarity=-0.159 Sum_probs=22.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCceEEEEEEee
Q 044140 16 SNHSYYALEWALDYFFPPFAPNHTFQLVLIHAR 48 (166)
Q Consensus 16 s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~ 48 (166)
...+++.+++|+++|+ .+.. +|+++|=-
T Consensus 169 ~~~~eRiar~AFe~A~-~rrk----kVt~v~Ka 196 (363)
T 1cnz_A 169 RFEIERIARIAFESAR-KRRR----KVTSIDKA 196 (363)
T ss_dssp HHHHHHHHHHHHHHHH-TTTS----EEEEEECT
T ss_pred HHHHHHHHHHHHHHHH-hcCC----eEEEEECC
Confidence 4678999999999999 6654 88888753
No 405
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=24.95 E-value=2e+02 Score=20.79 Aligned_cols=48 Identities=0% Similarity=-0.085 Sum_probs=30.1
Q ss_pred hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCC--ccEEEEc
Q 044140 112 NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCS--CTVMIVK 160 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~--~pVlvv~ 160 (166)
-.+.+.|++.++|-+++-......-..-+. ..-..|...++ .||++.-
T Consensus 92 i~la~~A~~~Gadavlv~~P~~~~s~~~l~-~~f~~va~a~~~~lPiilYn 141 (313)
T 3dz1_A 92 RRLARLSMDAGAAGVMIAPPPSLRTDEQIT-TYFRQATEAIGDDVPWVLQD 141 (313)
T ss_dssp HHHHHHHHHHTCSEEEECCCTTCCSHHHHH-HHHHHHHHHHCTTSCEEEEE
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCHHHHH-HHHHHHHHhCCCCCcEEEEe
Confidence 344577889999999997654222122222 23355677778 9999874
No 406
>1wot_A Putative minimal nucleotidyltransferase; alpha and beta, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: d.218.1.5
Probab=24.93 E-value=71 Score=18.54 Aligned_cols=53 Identities=17% Similarity=-0.021 Sum_probs=28.0
Q ss_pred EEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 103 VHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 103 ~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
...+.|+.+++= +-..-++|++|+.....+... +......+-...++||=++.
T Consensus 27 ~v~LFGS~arG~--~~~~SDiDl~V~~~~~~~~~~---~~~l~~~l~~~l~~~vDlv~ 79 (98)
T 1wot_A 27 RVRVFGSVARGE--AREDSDLDLLVAFEEGRTLLD---HARLKLALEGLLGVRVDIVS 79 (98)
T ss_dssp SCEECSHHHHTC--CCTTCCCEEEECCCSSCCHHH---HHHHHHHHHHHSCSCCEEEE
T ss_pred EEEEEccccCCC--CCCCCCEEEEEEeCCCCCHHH---HHHHHHHHHHHcCCCEEEEE
Confidence 456678776652 223458999997654332211 12333444333456665554
No 407
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=24.89 E-value=2.2e+02 Score=21.42 Aligned_cols=69 Identities=10% Similarity=0.158 Sum_probs=38.9
Q ss_pred HHHHHHHHHHhCCCCcccEEeec-CCc------hhHHHHHHhhhCCc---EE-EEcccCCccchhhhcccHHHHH--hhc
Q 044140 85 VADKATSICAKREVNDMPVHVMQ-GDP------RNVMTEAVERFHPT---IL-VLGSHGYGAVKRAVLGSVSDYS--AHH 151 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~-g~~------~~~I~~~a~~~~~d---li-V~g~~~~~~~~~~~~gs~~~~l--~~~ 151 (166)
+.+++.+.+.+.|+. +...+.. |.+ .+.+.+.+.+.++| +| -+|...- +.++..+ ...
T Consensus 77 ~~~~v~~~L~~~g~~-~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGGsv--------~D~ak~~Aa~~~ 147 (390)
T 3okf_A 77 YAPAIISLLDHIGCQ-HALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGGVI--------GDLVGFAAACYQ 147 (390)
T ss_dssp HHHHHHHHHHHHTCE-EEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESHHH--------HHHHHHHHHHBT
T ss_pred HHHHHHHHHHHcCCe-EEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCcHH--------hhHHHHHHHHhc
Confidence 445566666667888 7655544 332 45667777778884 44 3442211 2222222 234
Q ss_pred CCccEEEEcCC
Q 044140 152 CSCTVMIVKMP 162 (166)
Q Consensus 152 ~~~pVlvv~~~ 162 (166)
..+|++.||=.
T Consensus 148 rgip~I~IPTT 158 (390)
T 3okf_A 148 RGVDFIQIPTT 158 (390)
T ss_dssp TCCEEEEEECS
T ss_pred CCCCEEEeCCC
Confidence 57899888853
No 408
>1di0_A Lumazine synthase; transferase; 2.70A {Brucella abortus} SCOP: c.16.1.1 PDB: 1t13_A* 1xn1_A
Probab=24.84 E-value=1.5e+02 Score=19.31 Aligned_cols=78 Identities=10% Similarity=-0.037 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhCCCCc--ccEEeecC--CchhHHHHHHhhhCCcEEEE-ccc--CCccchhhhcccHHHHHhh---c
Q 044140 82 AQKVADKATSICAKREVND--MPVHVMQG--DPRNVMTEAVERFHPTILVL-GSH--GYGAVKRAVLGSVSDYSAH---H 151 (166)
Q Consensus 82 ~~~~l~~~~~~~~~~~i~~--~~~~v~~g--~~~~~I~~~a~~~~~dliV~-g~~--~~~~~~~~~~gs~~~~l~~---~ 151 (166)
.+.+++.+.+.+.+.|+.. +++..+.| +..-.+.+.++..++|-||. |.- |.+.--.+....++.-|++ +
T Consensus 25 ~~~Ll~gA~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~Gl~~v~L~ 104 (158)
T 1di0_A 25 VDEARKSFVAELAAKTGGSVEVEIFDVPGAYEIPLHAKTLARTGRYAAIVGAAFVIDGGIYDHDFVATAVINGMMQVQLE 104 (158)
T ss_dssp HHHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEECCCCSSBCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCCCcHHHHHHHHHHHHHHHHHhh
Confidence 3455666666667777651 34444557 66677778888888987765 543 3333334455555555544 4
Q ss_pred CCccEEEE
Q 044140 152 CSCTVMIV 159 (166)
Q Consensus 152 ~~~pVlvv 159 (166)
...||...
T Consensus 105 ~~vPV~~G 112 (158)
T 1di0_A 105 TEVPVLSV 112 (158)
T ss_dssp HCCCEEEE
T ss_pred cCCCEEEE
Confidence 57787654
No 409
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=24.53 E-value=1.2e+02 Score=18.05 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=21.4
Q ss_pred hCCcEEEEcccCCccchhhhcccHHHHHhhc---CCccEEEEcCC
Q 044140 121 FHPTILVLGSHGYGAVKRAVLGSVSDYSAHH---CSCTVMIVKMP 162 (166)
Q Consensus 121 ~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~~ 162 (166)
..+|+|++...-.+ ...+ .....+-.. ..+|++++-..
T Consensus 61 ~~~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~t~~ 101 (149)
T 1k66_A 61 PRPAVILLDLNLPG-TDGR---EVLQEIKQDEVLKKIPVVIMTTS 101 (149)
T ss_dssp CCCSEEEECSCCSS-SCHH---HHHHHHTTSTTGGGSCEEEEESC
T ss_pred CCCcEEEEECCCCC-CCHH---HHHHHHHhCcccCCCeEEEEeCC
Confidence 68999999865322 1111 123334333 35788888654
No 410
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=24.45 E-value=1.1e+02 Score=19.34 Aligned_cols=35 Identities=6% Similarity=-0.064 Sum_probs=24.4
Q ss_pred CCCCcccEEeecC-CchhHHHHHHhhhCCcEEEEccc
Q 044140 96 REVNDMPVHVMQG-DPRNVMTEAVERFHPTILVLGSH 131 (166)
Q Consensus 96 ~~i~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~ 131 (166)
.|++ ++...... .-...|.+..++..+|+||--..
T Consensus 48 ~Gl~-v~~v~k~~~eG~p~I~d~I~~geIdlVInt~~ 83 (134)
T 2xw6_A 48 TGLT-VEKLLSGPLGGDQQMGARVAEGRILAVIFFRD 83 (134)
T ss_dssp HCCC-CEECSCGGGTHHHHHHHHHHTTCEEEEEEECC
T ss_pred hCce-EEEEEecCCCCcchHHHHHHCCCccEEEEccC
Confidence 4888 66532211 22357999999999999998655
No 411
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=24.44 E-value=1.7e+02 Score=19.98 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCchh--HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDPRN--VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
++.+.+.+.+.|+. +.+....++... ..++.....++|-||+......... ...+ .+....+||+++-.
T Consensus 20 ~~gi~~~~~~~g~~-~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~-----~~~~-~~~~~~iPvV~~~~ 90 (283)
T 2ioy_A 20 KNGAEEKAKELGYK-IIVEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVV-----TAIK-EANSKNIPVITIDR 90 (283)
T ss_dssp HHHHHHHHHHHTCE-EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH-----HHHH-HHHHTTCCEEEESS
T ss_pred HHHHHHHHHhcCcE-EEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhH-----HHHH-HHHHCCCeEEEecC
Confidence 34444445555776 544333344433 3344455678999888543222111 1122 24566899988743
No 412
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=24.44 E-value=63 Score=22.15 Aligned_cols=26 Identities=8% Similarity=0.001 Sum_probs=13.1
Q ss_pred CCEEEEEEcCChh--HHHHHHHHHHhcC
Q 044140 6 KPIMMVAIDDSNH--SYYALEWALDYFF 31 (166)
Q Consensus 6 ~~~Ilv~vd~s~~--s~~al~~a~~la~ 31 (166)
++.|+|.--.+.. +.-++-.+..+++
T Consensus 4 mk~i~Itgt~t~vGKT~vt~~L~~~l~~ 31 (228)
T 3of5_A 4 MKKFFIIGTDTEVGKTYISTKLIEVCEH 31 (228)
T ss_dssp CEEEEEEESSSSSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3666666555443 3344444444544
No 413
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=24.39 E-value=1.9e+02 Score=20.48 Aligned_cols=73 Identities=8% Similarity=0.006 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHhCCCCcccEEeec--C------CchhHHHHHHh---hhCCcEEEEcccCCccchhhhcccHHHHHhhcC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQ--G------DPRNVMTEAVE---RFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHC 152 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~--g------~~~~~I~~~a~---~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~ 152 (166)
+......+.+++.|+. ++..+.. | ...+.+.++++ +.++|.|.+... .+...........+.+....
T Consensus 120 ~~~~~~v~~a~~~G~~-V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt-~G~~~P~~~~~lv~~l~~~~ 197 (295)
T 1ydn_A 120 ERLSPVIGAAINDGLA-IRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDT-IGRGTPDTVAAMLDAVLAIA 197 (295)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEET-TSCCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCe-EEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCC-CCCcCHHHHHHHHHHHHHhC
Confidence 3344556677788988 7744332 1 23445555554 999999999842 33333444456667777777
Q ss_pred C-ccEEE
Q 044140 153 S-CTVMI 158 (166)
Q Consensus 153 ~-~pVlv 158 (166)
+ +|+-+
T Consensus 198 ~~~~l~~ 204 (295)
T 1ydn_A 198 PAHSLAG 204 (295)
T ss_dssp CGGGEEE
T ss_pred CCCeEEE
Confidence 6 66644
No 414
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=24.38 E-value=98 Score=21.29 Aligned_cols=42 Identities=2% Similarity=0.024 Sum_probs=26.3
Q ss_pred HHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEccc
Q 044140 87 DKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSH 131 (166)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~ 131 (166)
.+..+.+++.|.. +-+-+..+.+.+.+..+.. ..|+|.+.+-
T Consensus 102 ~~~i~~i~~~G~k-~gval~p~t~~e~l~~~l~--~~D~Vl~msv 143 (228)
T 3ovp_A 102 GALIKDIRENGMK-VGLAIKPGTSVEYLAPWAN--QIDMALVMTV 143 (228)
T ss_dssp HHHHHHHHHTTCE-EEEEECTTSCGGGTGGGGG--GCSEEEEESS
T ss_pred HHHHHHHHHcCCC-EEEEEcCCCCHHHHHHHhc--cCCeEEEeee
Confidence 3444455566776 6555555677777766665 5788876554
No 415
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=24.38 E-value=2e+02 Score=20.71 Aligned_cols=49 Identities=4% Similarity=0.017 Sum_probs=31.9
Q ss_pred hHHHHHHhhhCCcEEEEcccCC---ccc-hhhhcccHHHHHhhcCCccEEEEcC
Q 044140 112 NVMTEAVERFHPTILVLGSHGY---GAV-KRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~~~~---~~~-~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
-.+.+.|++.++|-+++-..-+ ... ..-+. ..-..|...++.||++.-.
T Consensus 93 i~la~~A~~~Gadavlv~~Pyy~~~~~~s~~~l~-~~f~~va~a~~lPiilYn~ 145 (309)
T 3fkr_A 93 AARSLRAQQLGAAMVMAMPPYHGATFRVPEAQIF-EFYARVSDAIAIPIMVQDA 145 (309)
T ss_dssp HHHHHHHHHTTCSEEEECCSCBTTTBCCCHHHHH-HHHHHHHHHCSSCEEEEEC
T ss_pred HHHHHHHHHcCCCEEEEcCCCCccCCCCCHHHHH-HHHHHHHHhcCCCEEEEeC
Confidence 3445778899999999886643 121 22222 2335677788999998854
No 416
>1to6_A Glycerate kinase; glycerate metabolism, structural genomics T831, PSI, protein structure initiative; 2.50A {Neisseria meningitidis serogroup A} SCOP: c.141.1.1
Probab=24.28 E-value=1.2e+02 Score=22.77 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=25.0
Q ss_pred CCcEEEEcccCCccchhhhcccHHHHHhhcC--CccEEEEc
Q 044140 122 HPTILVLGSHGYGAVKRAVLGSVSDYSAHHC--SCTVMIVK 160 (166)
Q Consensus 122 ~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~--~~pVlvv~ 160 (166)
++||||.|-... . .+.+.|.+...|.+.+ .+||+++-
T Consensus 278 ~ADLVITGEG~~-D-~QT~~GK~p~gVa~~A~~~~Pviaia 316 (371)
T 1to6_A 278 DVDLVIVGEGRL-D-RQSLAGKAPIGVAKRTPVGVPVVAIC 316 (371)
T ss_dssp TCSEEEECCSEE-C-STTTTTCHHHHHHTTSCTTCCEEEEE
T ss_pred CCCEEEECCCCC-C-CCCCCCcHHHHHHHHHhcCCCEEEEe
Confidence 899999983321 1 2335677776666655 68999884
No 417
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=24.25 E-value=46 Score=24.98 Aligned_cols=26 Identities=12% Similarity=-0.078 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCceEEEEEEe
Q 044140 17 NHSYYALEWALDYFFPPFAPNHTFQLVLIHA 47 (166)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~~~l~lv~v 47 (166)
..+++..++|+++|+ .+.. +|+++|=
T Consensus 167 ~~~eRIar~AFe~A~-~rrk----kVT~v~K 192 (361)
T 3udu_A 167 KEIERIARIAFESAR-IRKK----KVHLIDK 192 (361)
T ss_dssp HHHHHHHHHHHHHHH-HTTS----EEEEEEC
T ss_pred HHHHHHHHHHHHHHH-HcCC----cEEEEEC
Confidence 568899999999999 6655 8998874
No 418
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=24.09 E-value=1.1e+02 Score=26.56 Aligned_cols=49 Identities=4% Similarity=0.139 Sum_probs=31.3
Q ss_pred hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh-------cCCccEEEEcCC
Q 044140 112 NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH-------HCSCTVMIVKMP 162 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~-------~~~~pVlvv~~~ 162 (166)
..|.++++++++++|++|..+. -...|...+..-+-. ..++++++|...
T Consensus 568 ~~l~~li~~~~~~~IaIGn~s~--et~~l~~~l~~~i~~~~~~~~~~~~i~~~iV~e~ 623 (1030)
T 3psf_A 568 DTLDNIIQSCQPNAIGINGPNP--KTQKFYKRLQEVLHKKQIVDSRGHTIPIIYVEDE 623 (1030)
T ss_dssp HHHHHHHHHHCCSEEEECCSST--HHHHHHHHHHHHHHHTTCBCTTSCBCCEEECCCT
T ss_pred HHHHHHHHHcCCcEEEECCCCH--HHHHHHHHHHHHHHhhccccccCCCccEEEecch
Confidence 6788899999999999997422 223344433332221 135888888754
No 419
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=24.08 E-value=1.9e+02 Score=20.26 Aligned_cols=70 Identities=13% Similarity=0.031 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCchh--HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPRN--VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.++.+.+.+.+.|+. +.+....++... ..++.....++|-||+......... .. -+.+....+||+++-.
T Consensus 21 ~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~-----~~-~~~~~~~giPvV~~~~ 92 (330)
T 3uug_A 21 DGNNIVKQLQEAGYK-TDLQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTTLS-----DV-LKQAGEQGIKVIAYDR 92 (330)
T ss_dssp HHHHHHHHHHHTTCE-EEEEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGH-----HH-HHHHHHTTCEEEEESS
T ss_pred HHHHHHHHHHHcCCE-EEEeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHH-----HH-HHHHHHCCCCEEEECC
Confidence 344555556667877 655554455543 3445555568999998754322211 11 2335667899999854
No 420
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase, DPOR, (bacterio)chlorophyll biosynthesis, photosynthesis; 2.40A {Thermosynechococcus elongatus}
Probab=24.07 E-value=47 Score=25.48 Aligned_cols=45 Identities=16% Similarity=0.097 Sum_probs=26.5
Q ss_pred CCchhHHHHHHh-hhCCcEEEEcccCCccchhhhcccHHHHHhhcC
Q 044140 108 GDPRNVMTEAVE-RFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHC 152 (166)
Q Consensus 108 g~~~~~I~~~a~-~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~ 152 (166)
|+..+.+++.++ +.++.+|.+.+.+.......-.......++++.
T Consensus 113 GdDi~~v~~~~~~~~~ipVi~v~~~Gf~~~~~~G~~~a~~al~~~~ 158 (460)
T 2xdq_A 113 KMDLEGLAPKLEAEIGIPIVVARANGLDYAFTQGEDTVLAAMAARC 158 (460)
T ss_dssp TCCHHHHHHHHHHHHSSCEEEEECCTTTCCTTHHHHHHHHHHHTTC
T ss_pred hhCHHHHHHHHhhccCCcEEEEecCCccccHHHHHHHHHHHHHHHh
Confidence 666777777765 668898888877654211111123344556554
No 421
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=24.02 E-value=1.8e+02 Score=20.13 Aligned_cols=67 Identities=6% Similarity=0.035 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCch--hHHHHHHhhhCCcEEEEcccCCccchhhhccc-HHHHHhhcCCccEEEEcC
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPR--NVMTEAVERFHPTILVLGSHGYGAVKRAVLGS-VSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs-~~~~l~~~~~~pVlvv~~ 161 (166)
.++.+.+.+.+.|.. +......++.. ..+++.....++|-||+....... . ..+.+ .. .+||+++-.
T Consensus 33 ~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-------~~~~~~l-~~-~iPvV~i~~ 102 (303)
T 3kke_A 33 MFSGVQMAASGHSTD-VLLGQIDAPPRGTQQLSRLVSEGRVDGVLLQRREDFD-------DDMLAAV-LE-GVPAVTINS 102 (303)
T ss_dssp HHHHHHHHHHHTTCC-EEEEECCSTTHHHHHHHHHHHSCSSSEEEECCCTTCC-------HHHHHHH-HT-TSCEEEESC
T ss_pred HHHHHHHHHHHCCCE-EEEEeCCCChHHHHHHHHHHHhCCCcEEEEecCCCCc-------HHHHHHH-hC-CCCEEEECC
Confidence 345555566667877 65444444332 446666777789988886543221 1 23333 34 899988854
No 422
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=24.00 E-value=1.6e+02 Score=19.39 Aligned_cols=45 Identities=7% Similarity=0.183 Sum_probs=28.1
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhh---hCCcEEEEccc
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDPRNVMTEAVER---FHPTILVLGSH 131 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~---~~~dliV~g~~ 131 (166)
++.+++.+...++. -.+.+..|+..+.+-..... ..+|+|++...
T Consensus 102 ~~~a~~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~ 149 (225)
T 3tr6_A 102 TALAKEYWEKAGLS-DKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD 149 (225)
T ss_dssp HHHHHHHHHHTTCT-TTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC
T ss_pred HHHHHHHHHHCCCC-CceEEEeCCHHHHHHHhhhccCCCCccEEEECCC
Confidence 44455555666766 45677778876655444422 58999997543
No 423
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=23.82 E-value=64 Score=23.91 Aligned_cols=28 Identities=11% Similarity=0.077 Sum_probs=22.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCceEEEEEEee
Q 044140 16 SNHSYYALEWALDYFFPPFAPNHTFQLVLIHAR 48 (166)
Q Consensus 16 s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~ 48 (166)
...+++..++|+++|+ .+.. +|+++|=.
T Consensus 143 ~~~~eRiar~AF~~A~-~rrk----kvt~v~Ka 170 (336)
T 1wpw_A 143 RFASERIAKVGLNFAL-RRRK----KVTCVHKA 170 (336)
T ss_dssp HHHHHHHHHHHHHHHH-TTTS----EEEEEECT
T ss_pred HHHHHHHHHHHHHHHH-HhCC----eEEEEECC
Confidence 4678999999999999 6654 88888753
No 424
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=23.77 E-value=64 Score=24.16 Aligned_cols=27 Identities=11% Similarity=-0.097 Sum_probs=22.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCceEEEEEEe
Q 044140 16 SNHSYYALEWALDYFFPPFAPNHTFQLVLIHA 47 (166)
Q Consensus 16 s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v 47 (166)
...+++..++|+++|+ .+.. +|+++|=
T Consensus 164 ~~~~eRiar~AFe~A~-~rrk----kVt~v~K 190 (358)
T 1a05_A 164 EDEIRRIAHVAFRAAQ-GRRK----QLCSVDK 190 (358)
T ss_dssp HHHHHHHHHHHHHHHH-TTTS----EEEEEEC
T ss_pred HHHHHHHHHHHHHHHH-hcCC----eEEEEEC
Confidence 4678999999999999 6654 8888875
No 425
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=23.66 E-value=1.7e+02 Score=20.77 Aligned_cols=62 Identities=8% Similarity=-0.027 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhCCCCcccEEeecC-CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 85 VADKATSICAKREVNDMPVHVMQG-DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.++.+.+.+.+.|.. +......+ +....+++.....++|-||+... -..+....+||+++-.
T Consensus 82 ~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~--------------~~~~~~~~iPvV~~~~ 144 (333)
T 3jvd_A 82 SLQTIQQDLKAAGYQ-MLVAEANSVQAQDVVMESLISIQAAGIIHVPV--------------VGSIAPEGIPMVQLTR 144 (333)
T ss_dssp HHHHHHHHHHHHTCE-EEEEECCSHHHHHHHHHHHHHHTCSEEEECCC--------------TTCCC-CCSCEEEECC
T ss_pred HHHHHHHHHHHCCCE-EEEECCCChHHHHHHHHHHHhCCCCEEEEcch--------------HHHHhhCCCCEEEECc
Confidence 344444555555666 44433333 11224555556668888887543 1123455778777743
No 426
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=23.66 E-value=64 Score=24.24 Aligned_cols=27 Identities=4% Similarity=-0.127 Sum_probs=22.1
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCceEEEEEEe
Q 044140 16 SNHSYYALEWALDYFFPPFAPNHTFQLVLIHA 47 (166)
Q Consensus 16 s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v 47 (166)
...+++.+++|+++|+ .+.. +|+++|=
T Consensus 173 r~~~eRIar~AFe~A~-~rrk----kVt~v~K 199 (366)
T 1vlc_A 173 RKTVERIARTAFEIAK-NRRK----KVTSVDK 199 (366)
T ss_dssp HHHHHHHHHHHHHHHH-TTTS----EEEEEEC
T ss_pred HHHHHHHHHHHHHHHH-HcCC----eEEEEEC
Confidence 3678999999999999 6654 8888875
No 427
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=23.64 E-value=73 Score=21.66 Aligned_cols=10 Identities=0% Similarity=0.311 Sum_probs=5.1
Q ss_pred CCcEEEEccc
Q 044140 122 HPTILVLGSH 131 (166)
Q Consensus 122 ~~dliV~g~~ 131 (166)
++|.||++..
T Consensus 73 g~d~iviaCn 82 (226)
T 2zsk_A 73 GAELIAFAAN 82 (226)
T ss_dssp TCSEEEESSS
T ss_pred CCCEEEECCC
Confidence 4555555544
No 428
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=23.64 E-value=1.6e+02 Score=19.31 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCCCcccEEee-cCC------chhHHHHHHhhhCCcEEEE
Q 044140 85 VADKATSICAKREVNDMPVHVM-QGD------PRNVMTEAVERFHPTILVL 128 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~-~g~------~~~~I~~~a~~~~~dliV~ 128 (166)
.-..+.+.+++.|+. +++... .++ ....-++.|++.++|+.|=
T Consensus 34 ia~~l~~~L~~~G~~-V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfIS 83 (180)
T 3qay_A 34 LAPVLADTFRKEGHK-VDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIE 83 (180)
T ss_dssp HHHHHHHHHHHTTCE-EEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEE
T ss_pred HHHHHHHHHHhcCCc-ceEEECCCCCccccccCHHHHHHHHHhcCCCEEEE
Confidence 334555566667877 644332 332 2456677889999998875
No 429
>3jyf_A 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'- nucleotidase bifunctional periplasmic...; APC63187.2; HET: EPE TAM; 2.43A {Klebsiella pneumoniae subsp}
Probab=23.64 E-value=2.2e+02 Score=20.86 Aligned_cols=41 Identities=10% Similarity=0.039 Sum_probs=27.9
Q ss_pred HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEE
Q 044140 113 VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMI 158 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 158 (166)
.+++..+..++|.+++|.|........ ....+..+++|++.
T Consensus 84 p~~~~mn~lg~D~~t~GNHEfd~G~~~-----l~~~~~~a~fp~l~ 124 (339)
T 3jyf_A 84 PVYKAMNTLNYAVGNLGNHEFNYGLDF-----LHKALAGAKFPYVN 124 (339)
T ss_dssp HHHHHHTTSCCSEEECCGGGGTTCHHH-----HHHHHHTCSSCEEC
T ss_pred HHHHHHHhcCCCEEecchhhhhccHHH-----HHHHHHhcCCceee
Confidence 366777888999999998764322221 23566778888764
No 430
>1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to L conversion; HET: FOC; 2.50A {Escherichia coli} SCOP: b.43.2.1 c.85.1.1
Probab=23.54 E-value=2.9e+02 Score=22.23 Aligned_cols=82 Identities=11% Similarity=-0.037 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccEEeecC-----CchhHHHHHHhhhCCcEEEEcccCCccchhhhccc
Q 044140 70 VINLVELDTKKRAQKVADKATSICAKR-EVNDMPVHVMQG-----DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGS 143 (166)
Q Consensus 70 ~~~~~~~~~~~~~~~~l~~~~~~~~~~-~i~~~~~~v~~g-----~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs 143 (166)
..+.+.++....+.+..+.+.+.+... +.+ +++....+ ..+....+.-++.++|.+|+-.+..+.. +
T Consensus 22 ~r~~l~~~~~~~~~~~~~~i~~~L~~~~~~p-vevV~~~~~i~~~~~a~~~~e~f~~~~vd~vi~~~~tf~~~------~ 94 (591)
T 1fui_A 22 VRESLEEQTMNMAKATAALLTEKLRHACGAA-VECVISDTCIAGMAEAAACEEKFSSQNVGLTITVTPCWCYG------S 94 (591)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCBCTTSCB-CCEEECSSCBCSHHHHHHHHHHHHTTTEEEEEEEESSCCCH------H
T ss_pred chhchhHHHHHHHHHHHHHHHHHHhhcCCCC-eEEEECCCccCCHHHHHHHHHHhhccCCCEEEEEcCcCCch------H
Confidence 344555555555556556666666543 466 66655333 2234456666777889999876644422 1
Q ss_pred HHHHHhhcC-CccEEEEcC
Q 044140 144 VSDYSAHHC-SCTVMIVKM 161 (166)
Q Consensus 144 ~~~~l~~~~-~~pVlvv~~ 161 (166)
..+... +.|+++.-.
T Consensus 95 ---e~l~~~~~~Pvli~~~ 110 (591)
T 1fui_A 95 ---ETIDMDPTRPKAIWGF 110 (591)
T ss_dssp ---HHSCCCSSSCEEEEEC
T ss_pred ---HHHHhcCCCCEEEeCC
Confidence 344455 799998743
No 431
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=23.38 E-value=66 Score=24.11 Aligned_cols=26 Identities=8% Similarity=-0.093 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCceEEEEEEe
Q 044140 17 NHSYYALEWALDYFFPPFAPNHTFQLVLIHA 47 (166)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~~~l~lv~v 47 (166)
..+++..++|+++|+ .+.. +|+++|=
T Consensus 163 ~~~eRIar~AFe~A~-~rrk----kVt~v~K 188 (359)
T 2y3z_A 163 PEVERVARVAFEAAR-KRRK----HVVSVDK 188 (359)
T ss_dssp HHHHHHHHHHHHHHH-TTTS----EEEEEEC
T ss_pred HHHHHHHHHHHHHHH-HcCC----eEEEEEC
Confidence 568899999999999 6654 8888875
No 432
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A
Probab=23.34 E-value=1.6e+02 Score=19.05 Aligned_cols=35 Identities=6% Similarity=-0.036 Sum_probs=24.6
Q ss_pred CCCCcccEEeecCC-chhHHHHHHhhhCCcEEEEccc
Q 044140 96 REVNDMPVHVMQGD-PRNVMTEAVERFHPTILVLGSH 131 (166)
Q Consensus 96 ~~i~~~~~~v~~g~-~~~~I~~~a~~~~~dliV~g~~ 131 (166)
.|++ ++....... -...|.+..++..+|+||--..
T Consensus 56 ~Gl~-v~~v~k~~eGG~p~I~d~I~~geIdlVInt~~ 91 (152)
T 1b93_A 56 TGMN-VNAMLSGPMGGDQQVGALISEGKIDVLIFFWD 91 (152)
T ss_dssp HCCC-CEEECCGGGTHHHHHHHHHHTTCCCEEEEECC
T ss_pred hCce-eEEEEecCCCCCchHHHHHHCCCccEEEEcCC
Confidence 5888 665432111 2357999999999999998765
No 433
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1 c.65.1.1 PDB: 2fmt_A* 3r8x_A
Probab=23.32 E-value=2.2e+02 Score=20.68 Aligned_cols=41 Identities=7% Similarity=0.114 Sum_probs=28.0
Q ss_pred HHHHHHHhCCCCcccEEeecCCc-hhHHHHHHhhhCCcEEEEcccC
Q 044140 88 KATSICAKREVNDMPVHVMQGDP-RNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v~~g~~-~~~I~~~a~~~~~dliV~g~~~ 132 (166)
.+.+.+.+.|++ +.. ..+. ..++.+..++.++|++|+...+
T Consensus 50 ~v~~~A~~~gIp-v~~---~~~~~~~~~~~~l~~~~~Dliv~~~y~ 91 (314)
T 1fmt_A 50 PVKVLAEEKGLP-VFQ---PVSLRPQENQQLVAELQADVMVVVAYG 91 (314)
T ss_dssp HHHHHHHHTTCC-EEC---CSCSCSHHHHHHHHHTTCSEEEEESCC
T ss_pred HHHHHHHHcCCc-EEe---cCCCCCHHHHHHHHhcCCCEEEEeecc
Confidence 345566778998 521 1222 3578888899999999998664
No 434
>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}
Probab=23.16 E-value=1.3e+02 Score=21.18 Aligned_cols=33 Identities=3% Similarity=0.034 Sum_probs=25.3
Q ss_pred CEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEeec
Q 044140 7 PIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHARP 49 (166)
Q Consensus 7 ~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~ 49 (166)
.+|+|+++ ..+|...+..+.++.. ++.++|+..
T Consensus 55 ~~i~Va~S-GkDS~vLL~Ll~~~~~---------~i~vv~iDt 87 (275)
T 2goy_A 55 DELWISFS-GAEDVVLVDMAWKLNR---------NVKVFSLDT 87 (275)
T ss_dssp TTEEEECC-SSTTHHHHHHHHHHCT---------TCCEEEECC
T ss_pred CCEEEEee-cHHHHHHHHHHHHhCC---------CceEEEEeC
Confidence 57999999 9999999988877622 556777754
No 435
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=23.15 E-value=1.2e+02 Score=17.58 Aligned_cols=51 Identities=2% Similarity=-0.050 Sum_probs=28.5
Q ss_pred CCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc---CCccEEEEcCC
Q 044140 108 GDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH---CSCTVMIVKMP 162 (166)
Q Consensus 108 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~---~~~pVlvv~~~ 162 (166)
-.......+..++..+|+|++...-.+ .... .....+-.. ..+|++++-..
T Consensus 37 ~~~~~~a~~~~~~~~~dlvl~D~~l~~-~~g~---~~~~~l~~~~~~~~~~ii~~s~~ 90 (129)
T 1p6q_A 37 AGDGEQGMKIMAQNPHHLVISDFNMPK-MDGL---GLLQAVRANPATKKAAFIILTAQ 90 (129)
T ss_dssp CSSHHHHHHHHHTSCCSEEEECSSSCS-SCHH---HHHHHHTTCTTSTTCEEEECCSC
T ss_pred cCCHHHHHHHHHcCCCCEEEEeCCCCC-CCHH---HHHHHHhcCccccCCCEEEEeCC
Confidence 344555566777778999999865322 1111 123333332 35788887543
No 436
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=23.11 E-value=44 Score=20.22 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=22.6
Q ss_pred HHHHHhCCCCcccEEeecC-CchhHHHH-HHhhhCCcEEEEcccC
Q 044140 90 TSICAKREVNDMPVHVMQG-DPRNVMTE-AVERFHPTILVLGSHG 132 (166)
Q Consensus 90 ~~~~~~~~i~~~~~~v~~g-~~~~~I~~-~a~~~~~dliV~g~~~ 132 (166)
.+.+++.|+. ++++.... .+.+.|.. .+. .+|+||+....
T Consensus 26 ~~aA~~~G~~-ikVEtqGs~G~~n~Lt~~~I~--~Ad~VIiA~d~ 67 (106)
T 2r48_A 26 QKAADRLGVS-IKVETQGGIGVENKLTEEEIR--EADAIIIAADR 67 (106)
T ss_dssp HHHHHHHTCE-EEEEEEETTEEESCCCHHHHH--HCSEEEEEESS
T ss_pred HHHHHHCCCe-EEEEecCCCCccCCCCHHHHH--hCCEEEEEeCC
Confidence 3344445777 66655443 23333333 344 89999998764
No 437
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=22.95 E-value=90 Score=21.30 Aligned_cols=50 Identities=4% Similarity=-0.138 Sum_probs=27.7
Q ss_pred hhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 111 RNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
..++.+.+.+.++|.|++-...+.....-+--....++....++||+..-
T Consensus 148 ~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~G 197 (244)
T 1vzw_A 148 LYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASG 197 (244)
T ss_dssp HHHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEES
T ss_pred HHHHHHHHHhCCCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEEC
Confidence 34566677778899777654332221111112355677777889998753
No 438
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=22.91 E-value=1.9e+02 Score=19.91 Aligned_cols=66 Identities=9% Similarity=-0.014 Sum_probs=34.7
Q ss_pred HHHHHHHHhCCCCcccEEeecCCchh--HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 87 DKATSICAKREVNDMPVHVMQGDPRN--VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
+.+.+.+.+.|+. +.+.-. ++... ..++.....++|-||+......... ... +.+....+||+++-
T Consensus 22 ~gi~~~a~~~g~~-~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~-----~~~-~~~~~~~iPvV~~~ 89 (306)
T 8abp_A 22 KFADKAGKDLGFE-VIKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGS-----AIV-AKARGYDMKVIAVD 89 (306)
T ss_dssp HHHHHHHHHHTEE-EEEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHH-----HHH-HHHHHTTCEEEEES
T ss_pred HHHHHHHHHcCCE-EEEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhH-----HHH-HHHHHCCCcEEEeC
Confidence 3444444555666 433222 34432 3445555568999988754322111 111 23556789999886
No 439
>3rfo_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure, cytosol; HET: PGE; 2.40A {Bacillus anthracis}
Probab=22.90 E-value=1.7e+02 Score=21.26 Aligned_cols=43 Identities=14% Similarity=0.091 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCC
Q 044140 88 KATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGY 133 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~ 133 (166)
.+.+.+.+.|++ +.. ...-...+.++..++.++|++|+...++
T Consensus 51 pv~~~A~~~gIp-v~~--~~~~~~~~~~~~l~~~~~Dliv~~~y~~ 93 (317)
T 3rfo_A 51 PVKVEAEKHGIP-VLQ--PLRIREKDEYEKVLALEPDLIVTAAFGQ 93 (317)
T ss_dssp HHHHHHHHTTCC-EEC--CSCTTSHHHHHHHHHHCCSEEEESSCCS
T ss_pred HHHHHHHHcCCC-EEc--cccCCCHHHHHHHHhcCCCEEEEcCchh
Confidence 345556677888 431 1111123557778889999999986643
No 440
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=22.89 E-value=1.9e+02 Score=19.84 Aligned_cols=67 Identities=7% Similarity=-0.023 Sum_probs=36.0
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCc--hhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDP--RNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~--~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
++.+.+.+.+.|.. +......++. ...+++.....++|-||+....... ...+ .+....+||+++-.
T Consensus 27 ~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-------~~~~-~l~~~~iPvV~~~~ 95 (287)
T 3bbl_A 27 LSSMVREAGAVNYF-VLPFPFSEDRSQIDIYRDLIRSGNVDGFVLSSINYND-------PRVQ-FLLKQKFPFVAFGR 95 (287)
T ss_dssp HHHHHHHHHHTTCE-EEECCCCSSTTCCHHHHHHHHTTCCSEEEECSCCTTC-------HHHH-HHHHTTCCEEEESC
T ss_pred HHHHHHHHHHcCCE-EEEEeCCCchHHHHHHHHHHHcCCCCEEEEeecCCCc-------HHHH-HHHhcCCCEEEECC
Confidence 34444455556766 4432222232 3445666666789988886432211 1222 24456889888743
No 441
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=22.85 E-value=2.1e+02 Score=20.33 Aligned_cols=34 Identities=12% Similarity=0.233 Sum_probs=24.2
Q ss_pred ccEEeecCCchhHHHHHHhhhCCcEEEEcccCCc
Q 044140 101 MPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 101 ~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~ 134 (166)
+.+....++..+.+.+..++.++|+||+-+...+
T Consensus 48 ~~v~~l~~~d~~~~~~~l~~~~~d~lIvD~Y~~~ 81 (282)
T 3hbm_A 48 YPVYELSSESIYELINLIKEEKFELLIIDHYGIS 81 (282)
T ss_dssp SCEEECSSSCHHHHHHHHHHHTCSEEEEECTTCC
T ss_pred CeEEEcCccCHHHHHHHHHhCCCCEEEEECCCCC
Confidence 3455555555667888888889999999877543
No 442
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=22.84 E-value=1.9e+02 Score=19.86 Aligned_cols=68 Identities=10% Similarity=0.011 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCch--hH---HHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEE
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPR--NV---MTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~--~~---I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 159 (166)
.++.+.+.+.+.|.. +......++.. .. +++.....++|-||+...... . ...+ .+....+||+++
T Consensus 26 ~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~--~-----~~~~-~l~~~~iPvV~~ 96 (290)
T 2rgy_A 26 ILKQTDLELRAVHRH-VVVATGCGESTPREQALEAVRFLIGRDCDGVVVISHDLH--D-----EDLD-ELHRMHPKMVFL 96 (290)
T ss_dssp HHHHHHHHHHHTTCE-EEEECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC--H-----HHHH-HHHHHCSSEEEE
T ss_pred HHHHHHHHHHHCCCE-EEEEeCCCchhhhhhHHHHHHHHHhcCccEEEEecCCCC--H-----HHHH-HHhhcCCCEEEE
Confidence 344445555666776 54433233332 23 556666678998888643222 1 1122 234467888887
Q ss_pred cC
Q 044140 160 KM 161 (166)
Q Consensus 160 ~~ 161 (166)
-.
T Consensus 97 ~~ 98 (290)
T 2rgy_A 97 NR 98 (290)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 443
>2obx_A DMRL synthase 1, 6,7-dimethyl-8-ribityllumazine synthase 1, riboflavin S; alpha-beta, transferase; HET: INI; 2.53A {Mesorhizobium loti}
Probab=22.79 E-value=1.6e+02 Score=19.07 Aligned_cols=77 Identities=12% Similarity=-0.049 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHhCCCCc--ccEEeecC--CchhHHHHHHhhhCCcEEEE-ccc--CCccchhhhcccHHHHHhh---cC
Q 044140 83 QKVADKATSICAKREVND--MPVHVMQG--DPRNVMTEAVERFHPTILVL-GSH--GYGAVKRAVLGSVSDYSAH---HC 152 (166)
Q Consensus 83 ~~~l~~~~~~~~~~~i~~--~~~~v~~g--~~~~~I~~~a~~~~~dliV~-g~~--~~~~~~~~~~gs~~~~l~~---~~ 152 (166)
+.+++.+.+.+.+.|+.. +++..+.| +..-.+.+.++..++|-||. |.- |.+.--.+....++.-|++ .+
T Consensus 27 ~~Ll~gA~~~l~~~Gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~Va~~vs~Gl~~v~L~~ 106 (157)
T 2obx_A 27 DQCVSAFEAEMADIGGDRFAVDVFDVPGAYEIPLHARTLAETGRYGAVLGTAFVVNGGIYRHEFVASAVIDGMMNVQLST 106 (157)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEEESSGGGHHHHHHHHHHHTCCSEEEEEEECCCCSSBCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeccccCCCcHHHHHHHHHHHHHHHHHhhc
Confidence 355566666667777651 34444557 66677778888888987765 543 3333334455555555544 45
Q ss_pred CccEEEE
Q 044140 153 SCTVMIV 159 (166)
Q Consensus 153 ~~pVlvv 159 (166)
..||...
T Consensus 107 ~vPV~~G 113 (157)
T 2obx_A 107 GVPVLSA 113 (157)
T ss_dssp CCCEEEE
T ss_pred CCCEEEE
Confidence 7787654
No 444
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=22.65 E-value=68 Score=24.47 Aligned_cols=27 Identities=7% Similarity=-0.092 Sum_probs=21.9
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCceEEEEEEe
Q 044140 16 SNHSYYALEWALDYFFPPFAPNHTFQLVLIHA 47 (166)
Q Consensus 16 s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v 47 (166)
...+++..++|+++|+ .... +|+++|=
T Consensus 206 r~~~eRIar~AFe~A~-~rrk----kVT~v~K 232 (405)
T 3r8w_A 206 AHEIDRIARVAFETAR-KRRG----KLCSVDK 232 (405)
T ss_dssp HHHHHHHHHHHHHHHH-TTTS----EEEEEEC
T ss_pred HHHHHHHHHHHHHHHH-HcCC----eEEEEEC
Confidence 3578899999999999 6655 8888874
No 445
>1n8f_A DAHP synthetase; (beta/alpha)8 barrel, metal binding protein; HET: PEP; 1.75A {Escherichia coli} SCOP: c.1.10.4 PDB: 1gg1_A 1kfl_A* 1qr7_A*
Probab=22.59 E-value=2.4e+02 Score=21.00 Aligned_cols=131 Identities=12% Similarity=0.072 Sum_probs=67.6
Q ss_pred CEEEEEEcCC--hhHHHHHHHHHHhcCCC---CCCCCceEEEEEEee-cCCCCCcCCCCCCCCCCCchhhHHHHHHHHHH
Q 044140 7 PIMMVAIDDS--NHSYYALEWALDYFFPP---FAPNHTFQLVLIHAR-PNPPSLLGLSGAGQGSAGSAHVINLVELDTKK 80 (166)
Q Consensus 7 ~~Ilv~vd~s--~~s~~al~~a~~la~~~---~~~~~~~~l~lv~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
.+++|.+.+. ++-+.++++|.+++. . .+.+ -..++.++ +.+.....+.+.+..+.... ..+ .+
T Consensus 52 ~rllvIaGPCsie~~e~aleyA~~L~~-~~~~l~d~---l~ivmR~yfeKPRTs~g~kGl~~dP~ld~--s~~-----i~ 120 (350)
T 1n8f_A 52 DRLLVVIGPCSIHDPVAAKEYATRLLA-LREELKDE---LEIVMRVYFEKPRTTVGWKGLINDPHMDN--SFQ-----IN 120 (350)
T ss_dssp CCEEEEEECSSCCCHHHHHHHHHHHHH-HHHHTTTT---EEEEEECCCCCCCSSSSCCCTTTCTTSSS--CCC-----HH
T ss_pred CceEEEEeCCcCCCHHHHHHHHHHHHH-HHHhhccC---eEEEEEeccccCcCCcCcCCCCCCCCccc--ccc-----HH
Confidence 4678888774 467788888888876 4 2220 22334443 23322222333221000000 000 11
Q ss_pred HHHHHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 81 RAQKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 81 ~~~~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
..-+++.++.-...+.|++ +-+.+..-...+.+.+ -+|.+-+|++.-... .-..++..++|||.+=+
T Consensus 121 ~GL~ilr~ll~~~~e~GlP-v~TEvld~~~~~~vad-----~vd~~qIGAR~~esq-------~hr~~asg~~~PVg~Kn 187 (350)
T 1n8f_A 121 DGLRIARKLLLDINDSGLP-AAGEFLDMITPQYLAD-----LMSWGAIGARTTESQ-------VHRELASGLSCPVGFKN 187 (350)
T ss_dssp HHHHHHHHHHHHHHHTTCC-EEEECCCSSTHHHHGG-----GCSEEEECTTTTTCH-------HHHHHHHTCSSCEEEEC
T ss_pred HHHHHHHHHHHHHHHhCCc-eEEeecCcccHHHHhh-----cCcEEEECCccccCH-------HHHHHHhcCCCeEEEec
Confidence 2223333333335677999 7777766554443333 588999998853321 22345667899998754
Q ss_pred C
Q 044140 161 M 161 (166)
Q Consensus 161 ~ 161 (166)
.
T Consensus 188 g 188 (350)
T 1n8f_A 188 G 188 (350)
T ss_dssp C
T ss_pred C
Confidence 3
No 446
>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}
Probab=22.41 E-value=2.2e+02 Score=20.33 Aligned_cols=85 Identities=14% Similarity=0.059 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHhcCCCCCCCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHhC
Q 044140 17 NHSYYALEWALDYFFPPFAPNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKATSICAKR 96 (166)
Q Consensus 17 ~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 96 (166)
.+-..++++|-.++. . ++ ++.-+++..+.+..+.+.+ .. ++-+..+.+.+++.
T Consensus 49 ~~~e~a~~~a~~~k~-~-ga----~~~k~~~~kprts~~~f~g------~g---------------~~gl~~l~~~~~~~ 101 (276)
T 1vs1_A 49 ESWEQVREAALAVKE-A-GA----HMLRGGAFKPRTSPYSFQG------LG---------------LEGLKLLRRAGDEA 101 (276)
T ss_dssp CCHHHHHHHHHHHHH-H-TC----SEEECBSSCCCSSTTSCCC------CT---------------HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-h-CC----CEEEeEEEeCCCChhhhcC------CC---------------HHHHHHHHHHHHHc
Confidence 356677777777666 3 55 6655555544332222221 00 23355566667888
Q ss_pred CCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCc
Q 044140 97 EVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 97 ~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~ 134 (166)
|++ +-+.+..-... +++.+. +|.+=+|++.-.
T Consensus 102 Gl~-~~te~~d~~~~----~~l~~~-vd~~kIgs~~~~ 133 (276)
T 1vs1_A 102 GLP-VVTEVLDPRHV----ETVSRY-ADMLQIGARNMQ 133 (276)
T ss_dssp TCC-EEEECCCGGGH----HHHHHH-CSEEEECGGGTT
T ss_pred CCc-EEEecCCHHHH----HHHHHh-CCeEEECccccc
Confidence 999 66655443333 334444 789999987543
No 447
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=22.38 E-value=1.1e+02 Score=20.60 Aligned_cols=36 Identities=8% Similarity=0.120 Sum_probs=26.4
Q ss_pred HHhCCCCcccEEeec----------CCchhHHHHHHhhhCCcEEEEc
Q 044140 93 CAKREVNDMPVHVMQ----------GDPRNVMTEAVERFHPTILVLG 129 (166)
Q Consensus 93 ~~~~~i~~~~~~v~~----------g~~~~~I~~~a~~~~~dliV~g 129 (166)
+++.|++ +++.... ...+..++...+...+|+++-+
T Consensus 44 a~~lg~~-~~~~~~p~~~~g~~~~~~~~~~~~~~~l~~g~~D~~~~~ 89 (259)
T 3g3k_A 44 STHLGFT-YEIRLVEDGKYGAQDDVNGQWNGMVRELIDHKADLAVAP 89 (259)
T ss_dssp HHHHTCC-EEEEECTTCCCCCBCTTTCCBCHHHHHHHTTSCSEECSS
T ss_pred HHHcCCe-EEEEECCCCCcCcccCCCCcchHHHHHHhcCcccEEEee
Confidence 3444788 7776654 3478889999999999998753
No 448
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=22.31 E-value=2e+02 Score=19.85 Aligned_cols=70 Identities=9% Similarity=0.024 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCCcccEEe-ecCCchh--HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 85 VADKATSICAKREVNDMPVHV-MQGDPRN--VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v-~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.++.+.+.+.+.|+. +.+.. ..++... ..++.....++|-||+.......... .. .-+....+||+++-.
T Consensus 22 ~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~-----~~-~~~~~~~iPvV~~~~ 94 (305)
T 3g1w_A 22 CLKGFEDAAQALNVT-VEYRGAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVELTD-----TI-NKAVDAGIPIVLFDS 94 (305)
T ss_dssp HHHHHHHHHHHHTCE-EEEEECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHH-----HH-HHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHcCCE-EEEeCCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHH-----HH-HHHHHCCCcEEEECC
Confidence 344455555556777 55422 2334433 34555566799999986543322211 11 234567899998854
No 449
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}
Probab=22.29 E-value=1.1e+02 Score=21.12 Aligned_cols=45 Identities=9% Similarity=0.058 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~ 132 (166)
..++.+++.+...|+. -.+.+..|+..+.+. ....+|+||++.-+
T Consensus 56 ~al~~A~~N~~~~gl~-~~I~~~~gD~l~~~~---~~~~~D~IviaGmG 100 (230)
T 3lec_A 56 GPYQSALKNVSEHGLT-SKIDVRLANGLSAFE---EADNIDTITICGMG 100 (230)
T ss_dssp HHHHHHHHHHHHTTCT-TTEEEEECSGGGGCC---GGGCCCEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCC-CcEEEEECchhhccc---cccccCEEEEeCCc
Confidence 3455556666677877 567778888766652 22369999986443
No 450
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}
Probab=22.25 E-value=2.3e+02 Score=20.55 Aligned_cols=51 Identities=12% Similarity=0.063 Sum_probs=32.4
Q ss_pred hHHHHHHhhhCCcEEEEcccCCcc--c-hhhhcccHHHHHhhcCCccEEEEcCCC
Q 044140 112 NVMTEAVERFHPTILVLGSHGYGA--V-KRAVLGSVSDYSAHHCSCTVMIVKMPK 163 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~~~~~~--~-~~~~~gs~~~~l~~~~~~pVlvv~~~~ 163 (166)
-.+.+.+++.++|-+++-...+.. . ..-+. ..-..|...++.||++...+.
T Consensus 96 i~la~~a~~~Gadavlv~~P~y~~kp~~~~~l~-~~f~~ia~a~~lPiilYn~P~ 149 (318)
T 3qfe_A 96 LEHINDASVAGANYVLVLPPAYFGKATTPPVIK-SFFDDVSCQSPLPVVIYNFPG 149 (318)
T ss_dssp HHHHHHHHHHTCSEEEECCCCC---CCCHHHHH-HHHHHHHHHCSSCEEEEECCC
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCCCCHHHHH-HHHHHHHhhCCCCEEEEeCCc
Confidence 344577889999999988764321 2 22222 223567778899999986543
No 451
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=22.20 E-value=1.5e+02 Score=20.21 Aligned_cols=50 Identities=10% Similarity=0.003 Sum_probs=29.1
Q ss_pred hhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 111 RNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
..+.++.+.+.+++.|++......+...-+--....++...+++||+..-
T Consensus 153 ~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~G 202 (253)
T 1thf_D 153 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASG 202 (253)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEES
T ss_pred HHHHHHHHHHCCCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEEC
Confidence 34566777778899887753332221111112345667777789998754
No 452
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=22.17 E-value=1.9e+02 Score=19.59 Aligned_cols=33 Identities=21% Similarity=0.259 Sum_probs=15.8
Q ss_pred ccEEeecCCch--------hHHHHHHhhhCC-cEEEEcccCC
Q 044140 101 MPVHVMQGDPR--------NVMTEAVERFHP-TILVLGSHGY 133 (166)
Q Consensus 101 ~~~~v~~g~~~--------~~I~~~a~~~~~-dliV~g~~~~ 133 (166)
+...+..||.. +.+.+..++.++ -+.|.|.|..
T Consensus 42 ~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~p~~~v~GNHD~ 83 (274)
T 3d03_A 42 PDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDD 83 (274)
T ss_dssp CSEEEEESCCBSSCCHHHHHHHHHHHTTCSSCEEEECCTTSC
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCC
Confidence 45556666542 133344443333 4556666654
No 453
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=22.15 E-value=65 Score=19.67 Aligned_cols=44 Identities=11% Similarity=0.103 Sum_probs=24.8
Q ss_pred HHHHHHHHhCCCCcccEEeecC-CchhHHHHHHhhhCCcEEEEcccC
Q 044140 87 DKATSICAKREVNDMPVHVMQG-DPRNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~v~~g-~~~~~I~~~a~~~~~dliV~g~~~ 132 (166)
+.+.+.+++.|+. ++++.... .+.+.|. ..+-..+|+||+....
T Consensus 26 eaL~~aA~~~G~~-ikVEtqGs~G~~n~Lt-~~~I~~Ad~VIiA~d~ 70 (111)
T 2kyr_A 26 QALEEAAVEAGYE-VKIETQGADGIQNRLT-AQDIAEATIIIHSVAV 70 (111)
T ss_dssp HHHHHHHHHTSSE-EEEEEEETTEEESCCC-HHHHHHCSEEEEEESS
T ss_pred HHHHHHHHHCCCe-EEEEecCCCCcCCCCC-HHHHHhCCEEEEEeCC
Confidence 3445556667888 77665443 2222222 2222379999998664
No 454
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=22.10 E-value=1.9e+02 Score=19.49 Aligned_cols=70 Identities=9% Similarity=0.053 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCch--hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDPR--NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
..++.+.+.+.+.|.. +......++.. ..+++.....++|-||+....... .... ..+....+||+++-.
T Consensus 19 ~~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~------~~~~-~~~~~~~iPvV~~~~ 90 (272)
T 3o74_A 19 RIAKQLEQGARARGYQ-LLIASSDDQPDSERQLQQLFRARRCDALFVASCLPPE------DDSY-RELQDKGLPVIAIDR 90 (272)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSS------CCHH-HHHHHTTCCEEEESS
T ss_pred HHHHHHHHHHHHCCCE-EEEEeCCCCHHHHHHHHHHHHHcCCCEEEEecCcccc------HHHH-HHHHHcCCCEEEEcc
Confidence 3444555566667877 65544444443 345566666789998886443111 1122 235567889888854
No 455
>1rvv_A Riboflavin synthase; transferase, flavoprotein; HET: INI; 2.40A {Bacillus subtilis} SCOP: c.16.1.1 PDB: 1zis_A* 1vsw_A 1vsx_A 3jv8_A
Probab=22.03 E-value=1.7e+02 Score=18.95 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhCCCCc--ccEEeecC--CchhHHHHHHhhhCCcEEEE-ccc--CCccchhhhcccHHHHHhh---c
Q 044140 82 AQKVADKATSICAKREVND--MPVHVMQG--DPRNVMTEAVERFHPTILVL-GSH--GYGAVKRAVLGSVSDYSAH---H 151 (166)
Q Consensus 82 ~~~~l~~~~~~~~~~~i~~--~~~~v~~g--~~~~~I~~~a~~~~~dliV~-g~~--~~~~~~~~~~gs~~~~l~~---~ 151 (166)
.+.+++.+.+.+.+.|+.. +++..+.| +..-.+.+.++..++|-||. |.- |.+.--.+....++.-|++ +
T Consensus 27 ~~~Ll~ga~~~l~~~gv~~~~i~v~~VPGafEiP~aa~~la~~~~yDavIaLG~VIrG~T~Hfd~V~~~vs~Gl~~v~l~ 106 (154)
T 1rvv_A 27 TSKLLSGAEDALLRHGVDTNDIDVAWVPGAFEIPFAAKKMAETKKYDAIITLGTVIRGATTHYDYVCNEAAKGIAQAANT 106 (154)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGEEEEEESSGGGHHHHHHHHHHTSCCSEEEEEEEEECCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccceEEEECCcHHHHHHHHHHHHhcCCCCEEEEeeeeecCCchHHHHHHHHHHHHHHHHHhh
Confidence 3456677777788888762 33444557 66677778888888987764 442 4443334455555555544 4
Q ss_pred CCccEEEE
Q 044140 152 CSCTVMIV 159 (166)
Q Consensus 152 ~~~pVlvv 159 (166)
...||...
T Consensus 107 ~~vPV~~G 114 (154)
T 1rvv_A 107 TGVPVIFG 114 (154)
T ss_dssp HCSCEEEE
T ss_pred hCCCEEEE
Confidence 56777653
No 456
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=22.03 E-value=2.1e+02 Score=20.07 Aligned_cols=67 Identities=3% Similarity=-0.040 Sum_probs=35.2
Q ss_pred HHHHHHHhCCCCcccEEe-ecCCchh--HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 88 KATSICAKREVNDMPVHV-MQGDPRN--VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v-~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+.+++.|+. +.... ..+++.. ..++..-..++|.||+......... ... ..+....+||+.+-.
T Consensus 24 g~~~~~~~~g~~-~~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~-----~~~-~~a~~~gipvV~~d~ 93 (316)
T 1tjy_A 24 GAQEAGKALGID-VTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLC-----PAL-KRAMQRGVKILTWDS 93 (316)
T ss_dssp HHHHHHHHHTCE-EEECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTH-----HHH-HHHHHTTCEEEEESS
T ss_pred HHHHHHHHhCCE-EEEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHH-----HHH-HHHHHCcCEEEEecC
Confidence 333444455666 44321 2344443 3344444568999998754332221 122 234567899998843
No 457
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=22.01 E-value=2.2e+02 Score=20.25 Aligned_cols=68 Identities=13% Similarity=0.114 Sum_probs=37.5
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCchh---HHHHHHhh-hCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDPRN---VMTEAVER-FHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~~~---~I~~~a~~-~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.+.+.+.+.+.|+. +.+....++... .|-..... .++|-||+.. ...... ..-+.+....+||+++-.
T Consensus 23 ~~g~~~~a~~~g~~-~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~-~~~~~~------~~~~~~~~~giPvV~~~~ 94 (350)
T 3h75_A 23 SQFMQAAARDLGLD-LRILYAERDPQNTLQQARELFQGRDKPDYLMLVN-EQYVAP------QILRLSQGSGIKLFIVNS 94 (350)
T ss_dssp HHHHHHHHHHHTCE-EEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC-CSSHHH------HHHHHHTTSCCEEEEEES
T ss_pred HHHHHHHHHHcCCe-EEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC-chhhHH------HHHHHHHhCCCcEEEEcC
Confidence 34444455556777 665544455543 23334443 6999988853 211111 112345677899999854
No 458
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=21.94 E-value=2.2e+02 Score=20.19 Aligned_cols=67 Identities=7% Similarity=-0.000 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCch--hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPR--NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.++.+.+.+.+.|.. +......++.. ..+++.....++|-||+....... .....+....+||+++-
T Consensus 80 ~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~~~ 148 (339)
T 3h5o_A 80 TLTGIETVLDAAGYQ-MLIGNSHYDAGQELQLLRAYLQHRPDGVLITGLSHAE--------PFERILSQHALPVVYMM 148 (339)
T ss_dssp HHHHHHHHHHHTTCE-EEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCT--------THHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHCCCE-EEEEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCCCH--------HHHHHHhcCCCCEEEEe
Confidence 344555556667777 54433333432 344555566788888875432211 11234566788988883
No 459
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=21.88 E-value=1.6e+02 Score=21.31 Aligned_cols=47 Identities=11% Similarity=0.112 Sum_probs=25.7
Q ss_pred HHHHHhhhCCcEEEEcccCCccc-hhhhcccHHHHHhhcCCccEEEEc
Q 044140 114 MTEAVERFHPTILVLGSHGYGAV-KRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 114 I~~~a~~~~~dliV~g~~~~~~~-~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
..+.+.+..+|.|++.....++. .....-....++....++||++.-
T Consensus 122 ~a~~~~~~GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaG 169 (332)
T 2z6i_A 122 LAKRMEKIGADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAG 169 (332)
T ss_dssp HHHHHHHTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEES
T ss_pred HHHHHHHcCCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEEC
Confidence 34566677899999932211111 001111344556666789998764
No 460
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=21.72 E-value=44 Score=20.22 Aligned_cols=39 Identities=10% Similarity=0.206 Sum_probs=22.0
Q ss_pred HHHHhCCCCcccEEeecC-CchhHHHH-HHhhhCCcEEEEcccC
Q 044140 91 SICAKREVNDMPVHVMQG-DPRNVMTE-AVERFHPTILVLGSHG 132 (166)
Q Consensus 91 ~~~~~~~i~~~~~~v~~g-~~~~~I~~-~a~~~~~dliV~g~~~ 132 (166)
+.+++.|+. ++++.... .+.+.|.. .+. .+|+||+....
T Consensus 27 ~aA~~~G~~-ikVEtqGs~G~~n~Lt~~~I~--~Ad~VIiA~d~ 67 (106)
T 2r4q_A 27 EKAKELGVE-IKVETNGSSGIKHKLTAQEIE--DAPAIIVAADK 67 (106)
T ss_dssp HHHHHHTCC-EEEEEEETTEEESCCCHHHHH--HCSCEEEEESS
T ss_pred HHHHHCCCe-EEEEecCCCCccCCCCHHHHH--hCCEEEEEeCC
Confidence 344445777 66655443 23333332 344 89999998664
No 461
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=21.70 E-value=76 Score=23.49 Aligned_cols=29 Identities=17% Similarity=-0.078 Sum_probs=22.3
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCceEEEEEEee
Q 044140 16 SNHSYYALEWALDYFFPPFAPNHTFQLVLIHAR 48 (166)
Q Consensus 16 s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v~ 48 (166)
...+++..++|+++|+ .++-+ +|+++|=.
T Consensus 143 ~~~~eRiar~AF~~A~-~r~rk---kvt~v~Ka 171 (333)
T 1x0l_A 143 KKASERIGRAALRIAE-GRPRK---TLHIAHKA 171 (333)
T ss_dssp HHHHHHHHHHHHHHHH-TSTTC---EEEEEECT
T ss_pred HHHHHHHHHHHHHHHH-hcCCC---eEEEEecC
Confidence 4678999999999999 66322 78888743
No 462
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=21.66 E-value=1.3e+02 Score=26.71 Aligned_cols=49 Identities=4% Similarity=0.162 Sum_probs=31.5
Q ss_pred hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh-------cCCccEEEEcCC
Q 044140 112 NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH-------HCSCTVMIVKMP 162 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~-------~~~~pVlvv~~~ 162 (166)
+.|.++++++++++|++|..+ .-...|...+.+-+-. ..++++++|...
T Consensus 565 ~~l~~li~~~~~~vIaIGn~s--ret~~l~~~l~~~i~~~~~~~~~~~~i~vviV~e~ 620 (1219)
T 3psi_A 565 DTLDNIIQSCQPNAIGINGPN--PKTQKFYKRLQEVLHKKQIVDSRGHTIPIIYVEDE 620 (1219)
T ss_dssp HHHHHHHHHHCCSEEEECCSS--THHHHHHHHHHHHHHHTTCBCSSSCBCCEEECCCT
T ss_pred HHHHHHHHHcCCcEEEECCCC--HHHHHHHHHHHHHHHhhccccccCCCccEEEECch
Confidence 678889999999999999743 2223344443332221 235888888754
No 463
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=21.57 E-value=2e+02 Score=19.67 Aligned_cols=67 Identities=4% Similarity=-0.156 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCch--hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPR--NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.++.+.+.+.+.|.. +.+....+++. ..+++.....++|-||+...... . ...+. +. ..+||+++-.
T Consensus 26 ~~~gi~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~---~----~~~~~-l~-~~iPvV~~~~ 94 (285)
T 3c3k_A 26 VVKGIEKTAEKNGYR-ILLCNTESDLARSRSCLTLLSGKMVDGVITMDALSE---L----PELQN-II-GAFPWVQCAE 94 (285)
T ss_dssp HHHHHHHHHHHTTCE-EEEEECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG---H----HHHHH-HH-TTSSEEEESS
T ss_pred HHHHHHHHHHHcCCE-EEEEeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC---h----HHHHH-Hh-cCCCEEEEcc
Confidence 334444555566777 55433333443 33455555678998888533211 1 12233 34 7889888843
No 464
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=21.57 E-value=1.8e+02 Score=19.15 Aligned_cols=73 Identities=8% Similarity=-0.041 Sum_probs=33.9
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhc-c-cHHHHHhhcC-CccEEEEcC
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVL-G-SVSDYSAHHC-SCTVMIVKM 161 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~-g-s~~~~l~~~~-~~pVlvv~~ 161 (166)
+..+.+.+++.|.. +-..+..-......++.+.+.++|.|.+. .+..+. .+-. + ....++-... ++|+++...
T Consensus 92 ~~~~~~~~~~~g~~-~~v~~~~~~t~~~~~~~~~~~g~d~i~v~-~g~~g~-~~~~~~~~~i~~l~~~~~~~~i~~~gG 167 (211)
T 3f4w_A 92 IQSCIRAAKEAGKQ-VVVDMICVDDLPARVRLLEEAGADMLAVH-TGTDQQ-AAGRKPIDDLITMLKVRRKARIAVAGG 167 (211)
T ss_dssp HHHHHHHHHHHTCE-EEEECTTCSSHHHHHHHHHHHTCCEEEEE-CCHHHH-HTTCCSHHHHHHHHHHCSSCEEEEESS
T ss_pred HHHHHHHHHHcCCe-EEEEecCCCCHHHHHHHHHHcCCCEEEEc-CCCccc-ccCCCCHHHHHHHHHHcCCCcEEEECC
Confidence 34555555555666 43322222222244556666789987764 221111 0000 1 1234444443 678877654
No 465
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7
Probab=21.48 E-value=1.3e+02 Score=23.04 Aligned_cols=47 Identities=6% Similarity=-0.141 Sum_probs=35.2
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCcc----ch---hhhcccHHHHHhhcCCcc
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGA----VK---RAVLGSVSDYSAHHCSCT 155 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~----~~---~~~~gs~~~~l~~~~~~p 155 (166)
...+++++.|++.+.-+|+-.+.+.-. .. ...+......+..++.+|
T Consensus 25 e~i~Ail~aAee~~sPVIi~~s~~~v~~~gGY~g~~~~~~~~~v~~~A~~~~vP 78 (420)
T 2fiq_A 25 LVIEAALAFDRNSTRKVLIEATSNQVNQFGGYTGMTPADFREFVFAIADKVGFA 78 (420)
T ss_dssp HHHHHHHHHTTTSCCCEEEEEETTTBSTTCTTTTBCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHcCCCEEEEcChhhhhhccCCCCCCHHHHHHHHHHHHHHcCcC
Confidence 678999999999999999988765422 21 134456778888888888
No 466
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=21.41 E-value=3.6e+02 Score=22.56 Aligned_cols=24 Identities=0% Similarity=-0.051 Sum_probs=20.9
Q ss_pred CchhHHHHHHhhhCCcEEEEcccC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~ 132 (166)
.+.+.|++.+.+.++|+|++.+..
T Consensus 642 v~~eeiv~aA~e~~adiVglSsl~ 665 (762)
T 2xij_A 642 QTPREVAQQAVDADVHAVGVSTLA 665 (762)
T ss_dssp CCHHHHHHHHHHTTCSEEEEEECS
T ss_pred CCHHHHHHHHHHcCCCEEEEeeec
Confidence 567999999999999999998653
No 467
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=21.41 E-value=75 Score=21.61 Aligned_cols=20 Identities=5% Similarity=0.165 Sum_probs=13.5
Q ss_pred HHHHhhhCCcEEEEcccCCc
Q 044140 115 TEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 115 ~~~a~~~~~dliV~g~~~~~ 134 (166)
.+..++.++|+||++....+
T Consensus 67 ~~~l~~~g~d~iviaCnTa~ 86 (228)
T 1jfl_A 67 AKRLEECGADFIIMPCNTAH 86 (228)
T ss_dssp HHHHHHHTCSEEECSCTGGG
T ss_pred HHHHHHcCCCEEEEcCccHH
Confidence 34445668999999877543
No 468
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=21.34 E-value=2.3e+02 Score=21.34 Aligned_cols=48 Identities=15% Similarity=0.204 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhCCCCcccE-Eeec--CCchhHHHHHHhhhCCcEEEEcccCCc
Q 044140 84 KVADKATSICAKREVNDMPV-HVMQ--GDPRNVMTEAVERFHPTILVLGSHGYG 134 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~-~v~~--g~~~~~I~~~a~~~~~dliV~g~~~~~ 134 (166)
+..+.+.+-+.+.|++ ... .+.. ......|+..+. ++|-||+|+...+
T Consensus 281 ~mA~~ia~gl~~~Gv~-~~~~~~~d~~~~~~s~i~~~i~--~~~~ivlGspT~~ 331 (410)
T 4dik_A 281 NVMKKAIDSLKEKGFT-PVVYKFSDEERPAISEILKDIP--DSEALIFGVSTYE 331 (410)
T ss_dssp HHHHHHHHHHHHTTCE-EEEEEECSSCCCCHHHHHHHST--TCSEEEEEECCTT
T ss_pred HHHHHHHHHHHhcCCc-eEEEEeccCCCCCHHHHHHHHH--hCCeEEEEeCCcC
Confidence 3445556666667887 443 2222 233456666555 8999999988754
No 469
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=21.32 E-value=2.1e+02 Score=19.75 Aligned_cols=69 Identities=7% Similarity=0.006 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCc--hhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDP--RNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~--~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
..++.+.+.+.+.|.. +......++. ...+++.....++|-||+...... ...-..+....+||+++-.
T Consensus 29 ~~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~--------~~~~~~l~~~~iPvV~i~~ 99 (295)
T 3hcw_A 29 NVLLGISETCNQHGYG-TQTTVSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN--------DPIKQMLIDESMPFIVIGK 99 (295)
T ss_dssp HHHHHHHHHHHTTTCE-EEECCCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT--------CHHHHHHHHTTCCEEEESC
T ss_pred HHHHHHHHHHHHCCCE-EEEEcCCCChHHHHHHHHHHHhCCcCEEEEcCcccC--------hHHHHHHHhCCCCEEEECC
Confidence 4455566666777777 4332222222 234666777779998888643211 1122345667899988854
No 470
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=21.32 E-value=1.9e+02 Score=19.74 Aligned_cols=7 Identities=0% Similarity=0.188 Sum_probs=3.5
Q ss_pred HHhCCCC
Q 044140 93 CAKREVN 99 (166)
Q Consensus 93 ~~~~~i~ 99 (166)
+.+.|..
T Consensus 39 ~~~~Gad 45 (253)
T 1thf_D 39 YSEIGID 45 (253)
T ss_dssp HHHTTCC
T ss_pred HHHcCCC
Confidence 3445555
No 471
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=21.32 E-value=2.2e+02 Score=20.12 Aligned_cols=68 Identities=4% Similarity=0.065 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCchh--HHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEc
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPRN--VMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~~--~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.++.+.+.+.+.|.. +......++... .+++.....++|-||+....... .....+.....+||+++-
T Consensus 76 ~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-------~~~~~l~~~~~iPvV~~~ 145 (340)
T 1qpz_A 76 IIEAVEKNCFQKGYT-LILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPE-------PLLAMLEEYRHIPMVVMD 145 (340)
T ss_dssp HHHHHHHHHHHTTCE-EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSCCCH-------HHHHHHHTTTTSCEEEEE
T ss_pred HHHHHHHHHHHcCCE-EEEEeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCCh-------HHHHHHHhhCCCCEEEEe
Confidence 344555555666776 544332334433 34555556789988885432211 112222223678988874
No 472
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=21.28 E-value=1.9e+02 Score=19.15 Aligned_cols=50 Identities=10% Similarity=-0.037 Sum_probs=27.8
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhh-cCCccEEEEcCC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH-HCSCTVMIVKMP 162 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~-~~~~pVlvv~~~ 162 (166)
.......+..++..+|+|++.-.-.+ ...+ .....+-. ...+||+++-..
T Consensus 34 ~~~~~al~~l~~~~~dlvllD~~lp~-~~g~---~~~~~lr~~~~~~~ii~lt~~ 84 (225)
T 3c3w_A 34 GSVAEAMARVPAARPDVAVLDVRLPD-GNGI---ELCRDLLSRMPDLRCLILTSY 84 (225)
T ss_dssp SSHHHHHHHHHHHCCSEEEECSEETT-EEHH---HHHHHHHHHCTTCEEEEGGGS
T ss_pred CCHHHHHHHHhhcCCCEEEEeCCCCC-CCHH---HHHHHHHHhCCCCcEEEEECC
Confidence 34455556666778999999754221 1111 12333333 345899887543
No 473
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=21.21 E-value=57 Score=24.18 Aligned_cols=27 Identities=15% Similarity=0.016 Sum_probs=22.1
Q ss_pred ChhHHHHHHHHHHhcCCCCCCCCceEEEEEEe
Q 044140 16 SNHSYYALEWALDYFFPPFAPNHTFQLVLIHA 47 (166)
Q Consensus 16 s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v 47 (166)
...+++..++|+++|+ .+.. +|+++|=
T Consensus 153 ~~~~eRiar~AFe~A~-~rrk----kVt~v~K 179 (337)
T 1w0d_A 153 AFGVRRVVADAFERAR-RRRK----HLTLVHK 179 (337)
T ss_dssp HHHHHHHHHHHHHHHH-HTTS----EEEEEEC
T ss_pred HHHHHHHHHHHHHHHH-HcCC----eEEEEEC
Confidence 4678999999999999 6654 8888874
No 474
>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A 3nt7_C
Probab=21.12 E-value=1.2e+02 Score=20.92 Aligned_cols=55 Identities=11% Similarity=0.058 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCCccchhhhccc
Q 044140 83 QKVADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGS 143 (166)
Q Consensus 83 ~~~l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs 143 (166)
+...+.+.+.+.+.. . -+-+++|..++.....+...+ +|+.+.|... ..+-|+|+
T Consensus 138 e~fTd~vI~~l~~~~-~--vVFiLWG~~Aq~k~~~I~~~~--~vl~s~HPSP-a~rgFfg~ 192 (218)
T 2owr_A 138 DKISKLLLQHITKHV-S--VLYCLGKTDFSNIRAKLESPV--TTIVGYHPAA-RDRQFEKD 192 (218)
T ss_dssp HHHHHHHHHHHTTTC-S--EEEEECHHHHHHHHHHCSCCC--EEEEECCTTC-----CCCC
T ss_pred HHHHHHHHHHHHhcC-C--EEEEEeCHHHHHHHhccCCCC--cEEEecCCCc-CCCCCCCC
Confidence 334444445454444 4 345678999988888776433 7777766443 44456666
No 475
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*
Probab=21.10 E-value=2e+02 Score=23.28 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=31.5
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCC-ccEEEEcC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCS-CTVMIVKM 161 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv~~ 161 (166)
.+.+.++.|.+.++..||.-+.+ |.++..+.+.-| ||++.+-+
T Consensus 380 ia~aa~~~a~~l~a~aIv~~T~s---------G~ta~~isr~RP~~pIia~t~ 423 (606)
T 3t05_A 380 IGISVAHTALNLNVKAIVAATES---------GSTARTISKYRPHSDIIAVTP 423 (606)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSS---------SHHHHHHHHTCCSSEEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEEcCC---------chHHHHHHhhCCCCCEEEEcC
Confidence 34555677888899999886653 667777777665 99998854
No 476
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=21.09 E-value=2.5e+02 Score=20.90 Aligned_cols=45 Identities=7% Similarity=0.044 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCCCcccEEee-cCCchhHHHHHHhhhCCcEEEEcccCC
Q 044140 87 DKATSICAKREVNDMPVHVM-QGDPRNVMTEAVERFHPTILVLGSHGY 133 (166)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~v~-~g~~~~~I~~~a~~~~~dliV~g~~~~ 133 (166)
+.+....+..+++ +-+... .| ......+.+.+.++|.|+++.++.
T Consensus 196 ~~I~~l~~~~~~P-VivK~vg~g-~s~e~A~~l~~aGad~I~V~g~GG 241 (365)
T 3sr7_A 196 KHLSDYAKKLQLP-FILKEVGFG-MDVKTIQTAIDLGVKTVDISGRGG 241 (365)
T ss_dssp HHHHHHHHHCCSC-EEEEECSSC-CCHHHHHHHHHHTCCEEECCCBC-
T ss_pred HHHHHHHHhhCCC-EEEEECCCC-CCHHHHHHHHHcCCCEEEEeCCCC
Confidence 3444444445666 544422 22 344566777888999999986643
No 477
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=21.06 E-value=1.4e+02 Score=22.26 Aligned_cols=52 Identities=4% Similarity=0.041 Sum_probs=36.1
Q ss_pred CchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
...+.+.+.+++.++|-||.-....=... .+......+.++...+|+|.+--
T Consensus 300 ~R~~~i~~~~~~~~~DGvI~~~~~~C~~~-~~~~~~~~~~~~~~giP~l~ie~ 351 (385)
T 3o3m_B 300 KRGSLIVDEVKKKDIDGVIFCMMKFCDPE-EYDYPLVRKDIEDSGIPTLYVEI 351 (385)
T ss_dssp THHHHHHHHHHHTTCCEEEEEEETTCHHH-HHHHHHHHHHHHTTTCCEEEEEE
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCCCCcc-HhhHHHHHHHHHHCCCCEEEEEe
Confidence 56788889999999999998655322211 12234455666888999999853
No 478
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=21.04 E-value=1.2e+02 Score=22.19 Aligned_cols=40 Identities=10% Similarity=0.119 Sum_probs=24.8
Q ss_pred CCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEE
Q 044140 108 GDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVM 157 (166)
Q Consensus 108 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVl 157 (166)
|+......+....+ +|.||+-.... ...+.+.+++++||+
T Consensus 78 gEsl~DTarvls~~-~D~iviR~~~~---------~~~~~lA~~~~vPVI 117 (307)
T 3tpf_A 78 GEPVKDTARVIGAM-VDFVMMRVNKH---------ETLLEFARYSKAPVI 117 (307)
T ss_dssp SSCHHHHHHHHHHH-SSEEEEECSCH---------HHHHHHHHHCSSCEE
T ss_pred CCCHHHHHHHHHHh-CCEEEEecCCh---------HHHHHHHHhCCCCEE
Confidence 43333344444455 89999964432 245667788999986
No 479
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=21.01 E-value=2.3e+02 Score=20.10 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=22.9
Q ss_pred CCcEEEEcccC---CccchhhhcccH-HHHHhhcCCccEEEEc
Q 044140 122 HPTILVLGSHG---YGAVKRAVLGSV-SDYSAHHCSCTVMIVK 160 (166)
Q Consensus 122 ~~dliV~g~~~---~~~~~~~~~gs~-~~~l~~~~~~pVlvv~ 160 (166)
++|.+++|..+ .+++... .|+. ...+.++..+|++|+=
T Consensus 177 ~vd~vivGAd~i~~nG~v~nk-iGt~~iA~~A~~~~vp~~V~a 218 (276)
T 1vb5_A 177 EASIAIVGADMITKDGYVVNK-AGTYLLALACHENAIPFYVAA 218 (276)
T ss_dssp TCSEEEECCSEECTTSCEEEE-TTHHHHHHHHHHTTCCEEEEC
T ss_pred cCCEEEEcccEEecCCCEeec-hhHHHHHHHHHHcCCCEEEec
Confidence 68888888764 2223222 3443 4445566778888874
No 480
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=21.00 E-value=2.3e+02 Score=20.11 Aligned_cols=67 Identities=10% Similarity=0.107 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCCCCcccEEeecCCch--hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEE
Q 044140 84 KVADKATSICAKREVNDMPVHVMQGDPR--NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIV 159 (166)
Q Consensus 84 ~~l~~~~~~~~~~~i~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv 159 (166)
..++.+.+.+.+.|+. +.......+.. ..+++.....++|-||+....... ..-..+....+||+++
T Consensus 85 ~~~~gi~~~a~~~g~~-~~~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~--------~~~~~l~~~~iPvV~i 153 (344)
T 3kjx_A 85 EVLTGINQVLEDTELQ-PVVGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEHSE--------AARAMLDAAGIPVVEI 153 (344)
T ss_dssp HHHHHHHHHHTSSSSE-EEEEECTTCHHHHHHHHHHHHTTCCSEEEEECSCCCH--------HHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHHHHHCCCE-EEEEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCCCH--------HHHHHHHhCCCCEEEE
Confidence 3445566666777777 54433333433 334555556788988885432211 1223456678999888
No 481
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation, allosteric enzyme, alternative splicing, glycolysis, magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A {Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 3srh_A 3srd_A 1zjh_A 4b2d_A* 4b2d_D* 3u2z_A* 3g2g_A 1t5a_A* 3bjt_A 4g1n_A* 3bjf_A* 3srf_C 1f3x_A 3n25_A 1f3w_A 1a49_A* 1a5u_A* ...
Probab=20.90 E-value=1.7e+02 Score=23.37 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=31.0
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCC-ccEEEEcC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCS-CTVMIVKM 161 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~-~pVlvv~~ 161 (166)
.+.+.++.|...++..||.-+.+ |.++..+.+.-| |||+.+-+
T Consensus 431 ia~aa~~~A~~l~a~aIv~~T~S---------G~TA~~iSr~RP~~PIia~T~ 474 (550)
T 3gr4_A 431 TAVGAVEASFKCCSGAIIVLTKS---------GRSAHQVARYRPRAPIIAVTR 474 (550)
T ss_dssp HHHHHHHHHHHTTCSCEEEECSS---------SHHHHHHHTTCCSSCEEEEES
T ss_pred HHHHHHHHHHhcCCCEEEEECCC---------cHHHHHHHhhCCCCCEEEEcC
Confidence 34556677888899988886653 666777777654 99998854
No 482
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=20.73 E-value=1.5e+02 Score=20.64 Aligned_cols=48 Identities=8% Similarity=0.036 Sum_probs=28.1
Q ss_pred hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcCC
Q 044140 112 NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKMP 162 (166)
Q Consensus 112 ~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~~ 162 (166)
..+++...+.++|+|.+|-...-.... .+ ...+.+ +....|+++.+..
T Consensus 23 ~~~~~~l~~~GaD~ielG~S~Gvt~~~-~~-~~v~~i-r~~~~Pivlm~y~ 70 (240)
T 1viz_A 23 DEQLEILCESGTDAVIIGGSDGVTEDN-VL-RMMSKV-RRFLVPCVLEVSA 70 (240)
T ss_dssp HHHHHHHHTSCCSEEEECC----CHHH-HH-HHHHHH-TTSSSCEEEECSC
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCHHH-HH-HHHHHh-hCcCCCEEEecCc
Confidence 456777788899999999632111221 11 233333 3467899987653
No 483
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=20.69 E-value=2.9e+02 Score=22.96 Aligned_cols=24 Identities=4% Similarity=-0.018 Sum_probs=20.8
Q ss_pred CchhHHHHHHhhhCCcEEEEcccC
Q 044140 109 DPRNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 109 ~~~~~I~~~a~~~~~dliV~g~~~ 132 (166)
.+.+.+++.+.++++|+|++.+..
T Consensus 634 v~~eeiv~aA~e~~adiVglSsl~ 657 (727)
T 1req_A 634 QTPEETARQAVEADVHVVGVSSLA 657 (727)
T ss_dssp BCHHHHHHHHHHTTCSEEEEEECS
T ss_pred CCHHHHHHHHHHcCCCEEEEeeec
Confidence 467899999999999999998653
No 484
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=20.69 E-value=1.1e+02 Score=21.65 Aligned_cols=36 Identities=8% Similarity=-0.022 Sum_probs=20.9
Q ss_pred HHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEE
Q 044140 115 TEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMI 158 (166)
Q Consensus 115 ~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 158 (166)
++..++.++|+||+.....+.+ .+.+-...++||+-
T Consensus 92 ~~~L~~~Gad~IVIaCNTah~~--------l~~lr~~~~iPvig 127 (268)
T 3s81_A 92 LHMLEDAGAECIVIPCNTAHYW--------FDDLQNVAKARMIS 127 (268)
T ss_dssp HHHHHHTTCSEEECSCSGGGGG--------HHHHHHHCSSEEEC
T ss_pred HHHHHHcCCCEEEEeCCCHHHH--------HHHHHHHCCCCEEc
Confidence 3445567889999987754321 22333445666654
No 485
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=20.67 E-value=2.3e+02 Score=20.07 Aligned_cols=45 Identities=11% Similarity=0.065 Sum_probs=26.6
Q ss_pred hhHHHHHHhhhCCcEEEEcccCCcc-chhhhcccHHHHHhhcCCccEEEEc
Q 044140 111 RNVMTEAVERFHPTILVLGSHGYGA-VKRAVLGSVSDYSAHHCSCTVMIVK 160 (166)
Q Consensus 111 ~~~I~~~a~~~~~dliV~g~~~~~~-~~~~~~gs~~~~l~~~~~~pVlvv~ 160 (166)
.+.++...+...+-|||++..-... ... ....+.....+|+..++
T Consensus 136 ~keV~KaIekgKAkLVVIA~DadP~eivk-----~LpaLC~k~gVPy~~V~ 181 (256)
T 3izc_H 136 LNHVVALIENKKAKLVLIANDVDPIELVV-----FLPALCKKMGVPYAIVK 181 (256)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCSSGGGTT-----HHHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHhCcceEEEEeCCCChHHHHH-----HHHHHHHhcCCCEEEEC
Confidence 5677788888899999998653221 111 12334445556655554
No 486
>2d1p_B TUSC, hypothetical UPF0116 protein YHEM; tRNA modification, sulfur transfer, structural genomics, translation; 2.15A {Escherichia coli} SCOP: c.114.1.1
Probab=20.62 E-value=49 Score=20.07 Aligned_cols=37 Identities=11% Similarity=0.046 Sum_probs=25.1
Q ss_pred CEEEEEEcCChh----HHHHHHHHHHhcCCCCCCCCceEEEEEEeec
Q 044140 7 PIMMVAIDDSNH----SYYALEWALDYFFPPFAPNHTFQLVLIHARP 49 (166)
Q Consensus 7 ~~Ilv~vd~s~~----s~~al~~a~~la~~~~~~~~~~~l~lv~v~~ 49 (166)
|++++.+..+|+ +..++++|...+. . +. ++.++...+
T Consensus 2 kk~~~vv~~~P~g~~~~~~al~~a~a~~a-~-~~----~v~vff~~D 42 (119)
T 2d1p_B 2 KRIAFVFSTAPHGTAAGREGLDALLATSA-L-TD----DLAVFFIAD 42 (119)
T ss_dssp CCEEEEECSCTTTSTHHHHHHHHHHHHHT-T-CS----CEEEEECGG
T ss_pred cEEEEEEcCCCCCcHHHHHHHHHHHHHHh-C-CC----CEEEEEehH
Confidence 679999988765 4667888877765 3 34 676665543
No 487
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=20.59 E-value=1.5e+02 Score=17.84 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=22.9
Q ss_pred hhhCCcEEEEcccCCccchhhhcccHHHHHhh---cCCccEEEEcCCC
Q 044140 119 ERFHPTILVLGSHGYGAVKRAVLGSVSDYSAH---HCSCTVMIVKMPK 163 (166)
Q Consensus 119 ~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~---~~~~pVlvv~~~~ 163 (166)
....+|+|++...-.+ ...+ .+.+.+-. ...+|++++-...
T Consensus 56 ~~~~~dliilD~~l~~-~~g~---~~~~~lr~~~~~~~~pii~~t~~~ 99 (152)
T 3heb_A 56 SAGRAQLVLLDLNLPD-MTGI---DILKLVKENPHTRRSPVVILTTTD 99 (152)
T ss_dssp GTTCBEEEEECSBCSS-SBHH---HHHHHHHHSTTTTTSCEEEEESCC
T ss_pred ccCCCCEEEEeCCCCC-CcHH---HHHHHHHhcccccCCCEEEEecCC
Confidence 4678999999865322 1111 12333333 2458898886543
No 488
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=20.54 E-value=1.8e+02 Score=18.74 Aligned_cols=13 Identities=15% Similarity=0.396 Sum_probs=10.9
Q ss_pred CCcEEEEcccCCc
Q 044140 122 HPTILVLGSHGYG 134 (166)
Q Consensus 122 ~~dliV~g~~~~~ 134 (166)
.+|.||+++.-+.
T Consensus 86 ~aD~iv~~~P~y~ 98 (201)
T 1t5b_A 86 AHDVIVIAAPMYN 98 (201)
T ss_dssp HCSEEEEECCCBT
T ss_pred hCCEEEEEeCccc
Confidence 8999999988544
No 489
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=20.47 E-value=1.8e+02 Score=19.86 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEccc
Q 044140 86 ADKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSH 131 (166)
Q Consensus 86 l~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~ 131 (166)
+.++++...+.+.. +.+.+..|=..+.+.+. .+.++|.+|+|+.
T Consensus 160 i~~lr~~~~~~~~~-~~I~v~GGI~~~~~~~~-~~aGad~vvvGSa 203 (230)
T 1tqj_A 160 IRALRQMCDERGLD-PWIEVDGGLKPNNTWQV-LEAGANAIVAGSA 203 (230)
T ss_dssp HHHHHHHHHHHTCC-CEEEEESSCCTTTTHHH-HHHTCCEEEESHH
T ss_pred HHHHHHHHHhcCCC-CcEEEECCcCHHHHHHH-HHcCCCEEEECHH
Confidence 34444555445555 66666566223444444 4458999999965
No 490
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=20.44 E-value=1.2e+02 Score=22.42 Aligned_cols=40 Identities=13% Similarity=0.063 Sum_probs=25.2
Q ss_pred CCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEE
Q 044140 108 GDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVM 157 (166)
Q Consensus 108 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVl 157 (166)
|+......+....+ +|.||+-.... ...+.+..++++||+
T Consensus 105 gEsl~DTarvLs~~-~D~IviR~~~~---------~~~~~lA~~~~vPVI 144 (339)
T 4a8t_A 105 HETIEDTSRVLSRL-VDILMARVERH---------HSIVDLANCATIPVI 144 (339)
T ss_dssp SSCHHHHHHHHHHH-CSEEEEECSSH---------HHHHHHHHHCSSCEE
T ss_pred CcCHHHHHHHHHHh-CCEEEEecCcH---------HHHHHHHHhCCCCEE
Confidence 44444444445555 89999864432 245667788899986
No 491
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=20.39 E-value=2e+02 Score=21.42 Aligned_cols=46 Identities=11% Similarity=0.026 Sum_probs=28.7
Q ss_pred HHHHHHHHhCCCCcccEEeecCCchhHHHHHHhhhCCcEEEEcccCC
Q 044140 87 DKATSICAKREVNDMPVHVMQGDPRNVMTEAVERFHPTILVLGSHGY 133 (166)
Q Consensus 87 ~~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~~~~dliV~g~~~~ 133 (166)
+.+.......+++ +-+..+-+.......+.+.+.++|.|+++.++.
T Consensus 177 ~~i~~i~~~~~vP-VivK~vG~g~s~~~A~~l~~aGad~I~V~g~GG 222 (368)
T 3vkj_A 177 EKLRDISKELSVP-IIVKESGNGISMETAKLLYSYGIKNFDTSGQGG 222 (368)
T ss_dssp HHHHHHHTTCSSC-EEEECSSSCCCHHHHHHHHHTTCCEEECCCBTS
T ss_pred HHHHHHHHHcCCC-EEEEeCCCCCCHHHHHHHHhCCCCEEEEeCCCC
Confidence 3444444444666 444322223456778888899999999987654
No 492
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=20.36 E-value=1.5e+02 Score=17.57 Aligned_cols=49 Identities=6% Similarity=-0.035 Sum_probs=27.0
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMP 162 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 162 (166)
......+..++..+|+|++...-.+ .... .....+-.. ..+|++++-..
T Consensus 32 ~~~~a~~~~~~~~~dlvl~D~~lp~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 81 (139)
T 2jk1_A 32 GAEAAIAILEEEWVQVIICDQRMPG-RTGV---DFLTEVRERWPETVRIIITGY 81 (139)
T ss_dssp SHHHHHHHHHHSCEEEEEEESCCSS-SCHH---HHHHHHHHHCTTSEEEEEESC
T ss_pred CHHHHHHHHhcCCCCEEEEeCCCCC-CcHH---HHHHHHHHhCCCCcEEEEeCC
Confidence 3455556666778999999865322 1111 123333332 35788887543
No 493
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=20.34 E-value=1.4e+02 Score=17.34 Aligned_cols=48 Identities=10% Similarity=0.051 Sum_probs=25.3
Q ss_pred chhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhc-CCccEEEEcCC
Q 044140 110 PRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHH-CSCTVMIVKMP 162 (166)
Q Consensus 110 ~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~-~~~pVlvv~~~ 162 (166)
..++.....++. +|+|++...-.+ ...+ ...+.+-.. ..+||+++-..
T Consensus 35 ~~~~~~~~~~~~-~dlvi~D~~l~~-~~g~---~~~~~l~~~~~~~~ii~~s~~ 83 (135)
T 3eqz_A 35 HPRAFLTLSLNK-QDIIILDLMMPD-MDGI---EVIRHLAEHKSPASLILISGY 83 (135)
T ss_dssp CHHHHTTSCCCT-TEEEEEECCTTT-THHH---HHHHHHHHTTCCCEEEEEESS
T ss_pred CHHHHHHhhccC-CCEEEEeCCCCC-CCHH---HHHHHHHhCCCCCCEEEEEec
Confidence 344455555555 999999865322 1111 122333333 34788887543
No 494
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=20.30 E-value=78 Score=23.16 Aligned_cols=74 Identities=12% Similarity=0.111 Sum_probs=45.5
Q ss_pred ChhHHHHHHHHHHhcCCCCC-CCCceEEEEEEeecCCCCCcCCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044140 16 SNHSYYALEWALDYFFPPFA-PNHTFQLVLIHARPNPPSLLGLSGAGQGSAGSAHVINLVELDTKKRAQKVADKATSICA 94 (166)
Q Consensus 16 s~~s~~al~~a~~la~~~~~-~~~~~~l~lv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 94 (166)
++.+..++..|.+++. . + . +++++.+-+. . +.+++.+.
T Consensus 15 ~~~~~eal~~A~~L~e-~-g~~----~V~av~~G~~---~--------------------------------~~~~~~a~ 53 (320)
T 1o97_D 15 RPVSLELIGAANGLKK-S-GED----KVVVAVIGSQ---A--------------------------------DAFVPALS 53 (320)
T ss_dssp CTHHHHHHHHHHHHCS-S-TTC----EEEEEEESTT---G--------------------------------GGGHHHHC
T ss_pred CHHHHHHHHHHHHHhh-C-CCC----cEEEEEECCc---H--------------------------------HHHHHHHH
Confidence 4678999999999986 3 4 4 8888866431 0 01111123
Q ss_pred hCCCCcccEEeecC--------CchhHHHHHHhhhCCcEEEEcccC
Q 044140 95 KREVNDMPVHVMQG--------DPRNVMTEAVERFHPTILVLGSHG 132 (166)
Q Consensus 95 ~~~i~~~~~~v~~g--------~~~~~I~~~a~~~~~dliV~g~~~ 132 (166)
..|..++ .+..+ ..+..|.+.+++.++|+|++|...
T Consensus 54 a~GaDkv--~~v~d~~l~~~~~~~a~~La~~i~~~~pdlVL~g~ts 97 (320)
T 1o97_D 54 VNGVDEL--VVVKGSSIDFDPDVFEASVSALIAAHNPSVVLLPHSV 97 (320)
T ss_dssp BTTCSEE--EEEECSCSSCCHHHHHHHHHHHHHHHCCSEEEEECSH
T ss_pred hcCCceE--EEEeCcccCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 3466622 22221 125667788888899999999753
No 495
>2fyw_A Conserved hypothetical protein; structural genomics, PSI, midwest CENT structural genomics, MCSG, protein structure initiative; 2.40A {Streptococcus pneumoniae} SCOP: c.135.1.1
Probab=20.24 E-value=2.3e+02 Score=19.89 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=14.4
Q ss_pred CCCCEEEEEEcCChhHHHHHHHHH
Q 044140 4 QTKPIMMVAIDDSNHSYYALEWAL 27 (166)
Q Consensus 4 ~~~~~Ilv~vd~s~~s~~al~~a~ 27 (166)
...++|++++|.++. +++.|+
T Consensus 36 ~~V~~I~~alD~t~~---vi~eAi 56 (267)
T 2fyw_A 36 KGIQRVMVALDIREE---TVAEAI 56 (267)
T ss_dssp SBCSEEEEESCCCHH---HHHHHH
T ss_pred CccCEEEEEEcCCHH---HHHHHH
Confidence 456899999999853 444443
No 496
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=20.22 E-value=1.7e+02 Score=19.60 Aligned_cols=43 Identities=9% Similarity=0.101 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCCcccEEeecCCchhHHHHHHhh---hCCcEEEEccc
Q 044140 88 KATSICAKREVNDMPVHVMQGDPRNVMTEAVER---FHPTILVLGSH 131 (166)
Q Consensus 88 ~~~~~~~~~~i~~~~~~v~~g~~~~~I~~~a~~---~~~dliV~g~~ 131 (166)
.+++.+.+.|+. -.+.+..|+..+.+-....+ ..+|+|++...
T Consensus 112 ~a~~~~~~~g~~-~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~ 157 (232)
T 3cbg_A 112 IAKKYWQKAGVA-EKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD 157 (232)
T ss_dssp HHHHHHHHHTCG-GGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC
T ss_pred HHHHHHHHcCCC-CcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC
Confidence 333444445665 45666778776655554432 47899998643
No 497
>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=20.22 E-value=1.2e+02 Score=22.04 Aligned_cols=41 Identities=17% Similarity=0.200 Sum_probs=24.7
Q ss_pred CCchhHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEE
Q 044140 108 GDPRNVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMI 158 (166)
Q Consensus 108 g~~~~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlv 158 (166)
|+......+....+ +|.||+-.... ...+.+.+++++||+=
T Consensus 87 gEsl~DTarvls~~-~D~iviR~~~~---------~~~~~la~~~~vPVIN 127 (301)
T 2ef0_A 87 REPVRDVAKNLERF-VEGIAARVFRH---------ETVEALARHAKVPVVN 127 (301)
T ss_dssp CCCHHHHHHHHTTT-CSEEEEECSSH---------HHHHHHHHHCSSCEEE
T ss_pred CCchHHHHHHHHHh-CCEEEEecCCh---------HHHHHHHHHCCCCEEe
Confidence 33333444444444 89999964432 2355677888999863
No 498
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=20.21 E-value=94 Score=17.48 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=8.5
Q ss_pred HHHHHHhhhCCcEEEEcc
Q 044140 113 VMTEAVERFHPTILVLGS 130 (166)
Q Consensus 113 ~I~~~a~~~~~dliV~g~ 130 (166)
.+.+..++..+-|+|++.
T Consensus 18 ~v~kai~~gkaklViiA~ 35 (82)
T 3v7e_A 18 QTVKALKRGSVKEVVVAK 35 (82)
T ss_dssp HHHHHHTTTCEEEEEEET
T ss_pred HHHHHHHcCCeeEEEEeC
Confidence 344444444555555543
No 499
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=20.19 E-value=2.2e+02 Score=19.54 Aligned_cols=69 Identities=6% Similarity=0.036 Sum_probs=37.2
Q ss_pred HHHHHHHHHHhCCCCcccEEeecCCch--hHHHHHHhhhCCcEEEEcccCCccchhhhcccHHHHHhhcCCccEEEEcC
Q 044140 85 VADKATSICAKREVNDMPVHVMQGDPR--NVMTEAVERFHPTILVLGSHGYGAVKRAVLGSVSDYSAHHCSCTVMIVKM 161 (166)
Q Consensus 85 ~l~~~~~~~~~~~i~~~~~~v~~g~~~--~~I~~~a~~~~~dliV~g~~~~~~~~~~~~gs~~~~l~~~~~~pVlvv~~ 161 (166)
.++.+.+.+.+.|+. +......++.. ..+++.....++|-||+....... . ... ..+....+||+++-.
T Consensus 38 ~~~gi~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~-~-----~~~-~~~~~~~iPvV~~~~ 108 (293)
T 2iks_A 38 IANYLERQARQRGYQ-LLIACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLPPE-H-----PFY-QRWANDPFPIVALDR 108 (293)
T ss_dssp HHHHHHHHHHHTTCE-EEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSCTT-C-----HHH-HTTTTSSSCEEEEES
T ss_pred HHHHHHHHHHHCCCE-EEEEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCc-H-----HHH-HHHHhCCCCEEEECC
Confidence 344555555667777 55433333443 234555556789988886432211 0 011 224456789888753
No 500
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=20.02 E-value=95 Score=20.34 Aligned_cols=37 Identities=14% Similarity=0.048 Sum_probs=28.1
Q ss_pred CCCEEEEEEcCChhHHHHHHHHHHhcCCCCCCCCceEEEEEEe
Q 044140 5 TKPIMMVAIDDSNHSYYALEWALDYFFPPFAPNHTFQLVLIHA 47 (166)
Q Consensus 5 ~~~~Ilv~vd~s~~s~~al~~a~~la~~~~~~~~~~~l~lv~v 47 (166)
..+.+++.+..|..+...++.+ +.|+ ..++ .+.++.-
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~~~-~~ak-~~g~----~vI~IT~ 148 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQAI-QAAH-DREM----LVVALTG 148 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHHHH-HHHH-HTTC----EEEEEEC
T ss_pred CCCCEEEEEeCCCCCHHHHHHH-HHHH-HCCC----EEEEEEC
Confidence 4467999999999888888744 7777 6777 7766644
Done!