BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044144
         (356 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
 pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
          Length = 440

 Score = 31.2 bits (69), Expect = 0.93,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 187 LDTSTLLFNEKVALPNLEALEISAINVDKIWHYN----QIPAAVFPRFQNLTRLIVWHCN 242
           L+T  L  N    +PN   + +S +   ++W  N     IP+  F R  +L RL +    
Sbjct: 114 LNTLELFDNRLTTIPNGAFVYLSKL--KELWLRNNPIESIPSYAFNRIPSLRRLDLGELK 171

Query: 243 KLKYIFSASMIGSLKHLQHLEVRFCEDLQEI 273
           +L YI   +  G L +L++L +  C +L+EI
Sbjct: 172 RLSYISEGAFEG-LSNLRYLNLAMC-NLREI 200


>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
           And Immunoglobulin Domain Of Netrin-G Ligand-3
          Length = 411

 Score = 29.6 bits (65), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 10/90 (11%)

Query: 10  LDKLQGIENVLFNLDTEGF---SQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILH 66
           L+ L+  +N L  + T+ F   S+L+ LW++NNP     ++S    A +  P L  L L 
Sbjct: 85  LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP-----IESIPSYAFNRVPSLRRLDLG 139

Query: 67  NLINMERIWIDQLKVESFNELKIIQAYNCD 96
            L  +E  +I +   E    L+ +    C+
Sbjct: 140 ELKRLE--YISEAAFEGLVNLRYLNLGMCN 167



 Score = 28.9 bits (63), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 21/119 (17%)

Query: 193 LFNEKVALPNLEALEISAINVDKIWHYN----QIPAAVFPRFQNLTRLIVWHCNKLKYIF 248
           LF+ ++     +A E  +  + ++W  N     IP+  F R  +L RL +    +L+YI 
Sbjct: 90  LFDNRLTTVPTQAFEYLS-KLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYIS 148

Query: 249 SASMIGSLKHLQHLEVRFCEDLQEI-------------ISENRADEVIPYFVFPQLTTL 294
            A+  G L +L++L +  C +L++I             +S NR D + P   F  LT+L
Sbjct: 149 EAAFEG-LVNLRYLNLGMC-NLKDIPNLTALVRLEELELSGNRLDLIRP-GSFQGLTSL 204


>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
           Of Netrin-G Ligand-3
 pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
           Of Netrin-G Ligand-3
          Length = 321

 Score = 29.6 bits (65), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 10/90 (11%)

Query: 10  LDKLQGIENVLFNLDTEGF---SQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILH 66
           L+ L+  +N L  + T+ F   S+L+ LW++NNP     ++S    A +  P L  L L 
Sbjct: 85  LNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNP-----IESIPSYAFNRVPSLRRLDLG 139

Query: 67  NLINMERIWIDQLKVESFNELKIIQAYNCD 96
            L  +E  +I +   E    L+ +    C+
Sbjct: 140 ELKRLE--YISEAAFEGLVNLRYLNLGMCN 167



 Score = 28.9 bits (63), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 57/119 (47%), Gaps = 21/119 (17%)

Query: 193 LFNEKVALPNLEALEISAINVDKIWHYN----QIPAAVFPRFQNLTRLIVWHCNKLKYIF 248
           LF+ ++     +A E  +  + ++W  N     IP+  F R  +L RL +    +L+YI 
Sbjct: 90  LFDNRLTTVPTQAFEYLS-KLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYIS 148

Query: 249 SASMIGSLKHLQHLEVRFCEDLQEI-------------ISENRADEVIPYFVFPQLTTL 294
            A+  G L +L++L +  C +L++I             +S NR D + P   F  LT+L
Sbjct: 149 EAAFEG-LVNLRYLNLGMC-NLKDIPNLTALVRLEELELSGNRLDLIRP-GSFQGLTSL 204


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.139    0.431 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,475,632
Number of Sequences: 62578
Number of extensions: 337228
Number of successful extensions: 571
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 567
Number of HSP's gapped (non-prelim): 8
length of query: 356
length of database: 14,973,337
effective HSP length: 100
effective length of query: 256
effective length of database: 8,715,537
effective search space: 2231177472
effective search space used: 2231177472
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)