Query 044144
Match_columns 356
No_of_seqs 139 out of 1298
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 11:50:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044144.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044144hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.8 1.7E-18 3.7E-23 183.8 16.0 47 287-335 867-913 (1153)
2 PLN03210 Resistant to P. syrin 99.7 6.3E-17 1.4E-21 171.9 18.3 246 29-337 611-891 (1153)
3 PLN00113 leucine-rich repeat r 99.6 1.8E-14 4E-19 151.9 13.0 37 178-214 236-273 (968)
4 PLN00113 leucine-rich repeat r 99.5 5E-14 1.1E-18 148.6 11.9 236 2-268 117-367 (968)
5 KOG0444 Cytoskeletal regulator 99.2 5.6E-13 1.2E-17 126.2 -3.7 288 2-336 54-383 (1255)
6 KOG0444 Cytoskeletal regulator 99.2 4.5E-13 9.8E-18 126.9 -5.0 300 4-350 33-373 (1255)
7 KOG4341 F-box protein containi 99.2 4.2E-13 9.2E-18 121.5 -6.6 297 4-333 139-444 (483)
8 KOG4194 Membrane glycoprotein 99.1 6.9E-11 1.5E-15 111.5 3.3 290 4-335 126-435 (873)
9 KOG4658 Apoptotic ATPase [Sign 99.0 1.5E-10 3.1E-15 118.7 3.8 274 25-337 567-851 (889)
10 KOG4194 Membrane glycoprotein 99.0 2.4E-10 5.2E-15 107.9 3.1 110 197-324 241-350 (873)
11 PRK15387 E3 ubiquitin-protein 98.9 9.2E-09 2E-13 103.7 12.2 238 6-326 204-456 (788)
12 KOG4341 F-box protein containi 98.9 5.3E-11 1.1E-15 108.1 -5.8 281 2-320 163-457 (483)
13 KOG0472 Leucine-rich repeat pr 98.8 3.3E-11 7E-16 109.0 -7.5 243 26-326 65-308 (565)
14 PRK15387 E3 ubiquitin-protein 98.8 2.9E-08 6.3E-13 100.1 10.7 219 4-300 223-456 (788)
15 PRK15370 E3 ubiquitin-protein 98.7 2.6E-08 5.7E-13 100.7 8.4 244 4-326 179-426 (754)
16 PRK15370 E3 ubiquitin-protein 98.5 3.7E-07 8.1E-12 92.5 9.2 227 29-334 178-406 (754)
17 KOG0618 Serine/threonine phosp 98.4 1E-07 2.2E-12 94.9 0.9 170 136-327 306-488 (1081)
18 KOG0617 Ras suppressor protein 98.3 4E-08 8.7E-13 79.5 -2.9 157 27-247 31-188 (264)
19 KOG0472 Leucine-rich repeat pr 98.2 2E-07 4.3E-12 84.9 -1.0 111 196-327 430-540 (565)
20 PF13855 LRR_8: Leucine rich r 98.2 2.6E-06 5.6E-11 58.0 4.7 60 201-268 1-60 (61)
21 PRK15386 type III secretion pr 98.1 1.1E-05 2.4E-10 75.4 8.9 11 232-242 157-167 (426)
22 KOG3207 Beta-tubulin folding c 98.1 6.7E-07 1.5E-11 82.3 0.3 89 2-96 120-208 (505)
23 KOG1947 Leucine rich repeat pr 98.1 2.8E-07 6E-12 89.6 -3.3 92 232-333 352-445 (482)
24 KOG4658 Apoptotic ATPase [Sign 98.1 1.5E-06 3.3E-11 89.5 1.9 105 27-149 543-651 (889)
25 cd00116 LRR_RI Leucine-rich re 98.1 5.4E-07 1.2E-11 82.8 -1.3 12 140-151 137-148 (319)
26 KOG3207 Beta-tubulin folding c 98.0 6E-07 1.3E-11 82.6 -1.3 93 197-299 218-311 (505)
27 KOG0617 Ras suppressor protein 98.0 1.4E-07 3.1E-12 76.3 -4.7 34 288-324 149-182 (264)
28 KOG2120 SCF ubiquitin ligase, 98.0 3.1E-07 6.7E-12 80.6 -3.2 119 197-327 256-375 (419)
29 cd00116 LRR_RI Leucine-rich re 98.0 4.8E-07 1E-11 83.2 -2.6 252 26-326 20-289 (319)
30 PRK15386 type III secretion pr 98.0 2.3E-05 4.9E-10 73.3 8.2 80 231-328 132-213 (426)
31 KOG0618 Serine/threonine phosp 98.0 2E-06 4.2E-11 86.0 1.0 110 200-333 218-327 (1081)
32 PF14580 LRR_9: Leucine-rich r 97.9 1.5E-05 3.2E-10 66.3 4.7 109 199-325 40-150 (175)
33 PF13855 LRR_8: Leucine rich r 97.9 2.9E-05 6.2E-10 52.8 4.9 59 231-299 1-59 (61)
34 KOG2120 SCF ubiquitin ligase, 97.8 3.4E-07 7.3E-12 80.4 -6.5 40 229-269 311-350 (419)
35 PF14580 LRR_9: Leucine-rich r 97.7 2.9E-05 6.4E-10 64.6 3.0 107 199-326 17-124 (175)
36 KOG4237 Extracellular matrix p 97.6 9.7E-06 2.1E-10 73.9 -0.3 136 197-353 270-421 (498)
37 KOG1947 Leucine rich repeat pr 97.6 3.2E-06 7E-11 82.1 -5.0 39 56-95 186-224 (482)
38 KOG4237 Extracellular matrix p 97.4 1.9E-05 4.1E-10 72.1 -1.1 57 15-77 78-134 (498)
39 KOG1259 Nischarin, modulator o 97.0 0.00018 3.9E-09 63.7 -0.1 86 197-300 325-410 (490)
40 KOG1259 Nischarin, modulator o 97.0 0.00024 5.1E-09 62.9 0.6 124 182-327 288-411 (490)
41 KOG3665 ZYG-1-like serine/thre 96.8 0.00029 6.3E-09 71.1 0.1 105 27-152 120-232 (699)
42 KOG3665 ZYG-1-like serine/thre 96.7 0.00036 7.7E-09 70.5 -0.5 131 178-324 122-259 (699)
43 KOG2982 Uncharacterized conser 96.1 0.0033 7.1E-08 55.9 2.0 38 56-94 69-106 (418)
44 KOG0532 Leucine-rich repeat (L 95.9 0.0015 3.3E-08 62.7 -1.0 107 203-333 145-251 (722)
45 PLN03150 hypothetical protein; 95.8 0.015 3.2E-07 58.8 5.5 110 203-329 420-529 (623)
46 PF12799 LRR_4: Leucine Rich r 95.7 0.017 3.7E-07 36.1 3.6 33 59-95 2-34 (44)
47 COG4886 Leucine-rich repeat (L 95.5 0.017 3.7E-07 54.8 4.5 34 229-266 253-286 (394)
48 PF12799 LRR_4: Leucine Rich r 95.4 0.015 3.2E-07 36.5 2.5 33 290-325 2-34 (44)
49 PLN03150 hypothetical protein; 95.4 0.027 5.9E-07 56.8 5.8 37 229-267 464-500 (623)
50 KOG3864 Uncharacterized conser 95.4 0.0024 5.2E-08 53.5 -1.5 71 194-270 118-189 (221)
51 KOG3864 Uncharacterized conser 95.3 0.0023 5E-08 53.6 -1.8 71 25-101 121-192 (221)
52 COG4886 Leucine-rich repeat (L 95.1 0.028 6.1E-07 53.4 4.8 40 194-241 248-287 (394)
53 KOG1644 U2-associated snRNP A' 95.1 0.039 8.4E-07 46.5 4.8 38 230-268 87-124 (233)
54 KOG1859 Leucine-rich repeat pr 95.0 0.00027 5.9E-09 69.5 -9.3 17 81-97 105-121 (1096)
55 KOG1859 Leucine-rich repeat pr 94.5 0.001 2.2E-08 65.6 -6.7 18 52-69 103-120 (1096)
56 KOG2739 Leucine-rich acidic nu 94.5 0.012 2.6E-07 51.3 0.4 118 199-332 41-160 (260)
57 KOG0532 Leucine-rich repeat (L 94.4 0.0021 4.6E-08 61.7 -4.7 144 181-349 101-244 (722)
58 PF13306 LRR_5: Leucine rich r 93.9 0.32 6.9E-06 37.8 7.4 14 251-264 52-65 (129)
59 KOG2123 Uncharacterized conser 92.7 0.0055 1.2E-07 54.0 -4.7 64 198-270 38-101 (388)
60 PF13504 LRR_7: Leucine rich r 92.6 0.094 2E-06 25.4 1.6 16 316-332 2-17 (17)
61 KOG2982 Uncharacterized conser 92.3 0.05 1.1E-06 48.6 0.7 122 193-326 89-210 (418)
62 KOG0531 Protein phosphatase 1, 91.5 0.063 1.4E-06 51.4 0.5 60 197-268 114-173 (414)
63 PF13306 LRR_5: Leucine rich r 91.0 2.2 4.7E-05 33.0 8.8 60 197-266 31-90 (129)
64 KOG1644 U2-associated snRNP A' 89.6 0.73 1.6E-05 39.0 5.0 13 138-150 138-150 (233)
65 KOG2123 Uncharacterized conser 87.5 0.04 8.6E-07 48.8 -3.9 104 199-321 17-123 (388)
66 KOG0531 Protein phosphatase 1, 86.7 0.18 3.8E-06 48.4 -0.4 106 136-268 91-197 (414)
67 KOG2739 Leucine-rich acidic nu 85.5 0.56 1.2E-05 41.2 2.1 68 197-270 87-156 (260)
68 smart00367 LRR_CC Leucine-rich 85.3 0.52 1.1E-05 25.5 1.2 17 231-247 2-18 (26)
69 PF00560 LRR_1: Leucine Rich R 82.6 0.82 1.8E-05 23.6 1.2 18 316-334 1-18 (22)
70 KOG1909 Ran GTPase-activating 72.7 0.33 7.1E-06 44.4 -3.4 120 199-326 155-281 (382)
71 KOG1909 Ran GTPase-activating 64.6 1.8 3.9E-05 39.7 -0.5 11 85-95 92-102 (382)
72 smart00370 LRR Leucine-rich re 61.3 4.8 0.0001 21.5 1.0 15 201-215 2-16 (26)
73 smart00369 LRR_TYP Leucine-ric 61.3 4.8 0.0001 21.5 1.0 15 201-215 2-16 (26)
74 PF13516 LRR_6: Leucine Rich r 47.8 12 0.00025 19.5 1.1 12 257-268 2-13 (24)
75 KOG4579 Leucine-rich repeat (L 46.7 4.3 9.4E-05 32.4 -1.0 36 230-268 76-111 (177)
76 KOG4579 Leucine-rich repeat (L 39.2 6.6 0.00014 31.4 -1.0 60 231-301 53-112 (177)
77 smart00365 LRR_SD22 Leucine-ri 31.8 37 0.0008 18.4 1.5 15 201-215 2-16 (26)
78 COG5238 RNA1 Ran GTPase-activa 24.3 30 0.00065 31.1 0.5 14 254-267 211-224 (388)
79 smart00364 LRR_BAC Leucine-ric 20.5 57 0.0012 17.8 0.9 15 201-215 2-16 (26)
80 KOG3763 mRNA export factor TAP 20.2 22 0.00047 34.9 -1.3 66 198-268 215-281 (585)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=1.7e-18 Score=183.77 Aligned_cols=47 Identities=19% Similarity=0.166 Sum_probs=41.4
Q ss_pred cCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCcccccccc
Q 044144 287 VFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAADL 335 (356)
Q Consensus 287 ~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~ 335 (356)
.+++|+.|++.+|++|+.++... ..+++|+.+++.+|++++.++...
T Consensus 867 ~l~~L~~L~L~~C~~L~~l~~~~--~~L~~L~~L~l~~C~~L~~~~l~~ 913 (1153)
T PLN03210 867 KFSNLSFLDMNGCNNLQRVSLNI--SKLKHLETVDFSDCGALTEASWNG 913 (1153)
T ss_pred cCCCCCEEECCCCCCcCccCccc--ccccCCCeeecCCCcccccccCCC
Confidence 48899999999999999998876 678999999999999999877644
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=6.3e-17 Score=171.87 Aligned_cols=246 Identities=17% Similarity=0.264 Sum_probs=126.6
Q ss_pred CCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCc-hhhh
Q 044144 29 SQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFW-LSTV 107 (356)
Q Consensus 29 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-l~~l 107 (356)
.+|+.|++.++ +++.+ |.....+++|+.|+++++.+++.+|. ...+++|+.|++.+|..+..++. +..+
T Consensus 611 ~~L~~L~L~~s-~l~~L-----~~~~~~l~~Lk~L~Ls~~~~l~~ip~----ls~l~~Le~L~L~~c~~L~~lp~si~~L 680 (1153)
T PLN03210 611 ENLVKLQMQGS-KLEKL-----WDGVHSLTGLRNIDLRGSKNLKEIPD----LSMATNLETLKLSDCSSLVELPSSIQYL 680 (1153)
T ss_pred cCCcEEECcCc-ccccc-----ccccccCCCCCEEECCCCCCcCcCCc----cccCCcccEEEecCCCCccccchhhhcc
Confidence 45555555554 34443 23345566777777776666665542 13466777777777776666543 2222
Q ss_pred --hccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCcccccccccccee
Q 044144 108 --VNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEI 185 (356)
Q Consensus 108 --l~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i 185 (356)
|+.| .+.+|..++.++. ...+++|+.|.+++|..++.++.. ...++.|.+
T Consensus 681 ~~L~~L-~L~~c~~L~~Lp~----------~i~l~sL~~L~Lsgc~~L~~~p~~-----------------~~nL~~L~L 732 (1153)
T PLN03210 681 NKLEDL-DMSRCENLEILPT----------GINLKSLYRLNLSGCSRLKSFPDI-----------------STNISWLDL 732 (1153)
T ss_pred CCCCEE-eCCCCCCcCccCC----------cCCCCCCCEEeCCCCCCccccccc-----------------cCCcCeeec
Confidence 0334 6667776666664 224567777777777666554421 112333333
Q ss_pred ecCCccccccccccCCC-------------------------------cCeEEecce-eeeEEcccCCCCCCCCCCCcCc
Q 044144 186 TLDTSTLLFNEKVALPN-------------------------------LEALEISAI-NVDKIWHYNQIPAAVFPRFQNL 233 (356)
Q Consensus 186 ~~~~~~~l~~~~~~l~~-------------------------------L~~L~l~~~-~l~~~~~~~~~p~~~~~~l~~L 233 (356)
+.+.-..++.. ..+++ |+.|.+.+| .+.. +|. .+.++++|
T Consensus 733 ~~n~i~~lP~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~------lP~-si~~L~~L 804 (1153)
T PLN03210 733 DETAIEEFPSN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVE------LPS-SIQNLHKL 804 (1153)
T ss_pred CCCcccccccc-ccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccc------cCh-hhhCCCCC
Confidence 33322222211 12344 444444444 2222 221 13344445
Q ss_pred cEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCC
Q 044144 234 TRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSE 313 (356)
Q Consensus 234 ~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~ 313 (356)
+.|++.+|++++.+ |... .+++|+.|++++|..+..+. .. .++|+.|++.+. .++.+|... ..
T Consensus 805 ~~L~Ls~C~~L~~L-P~~~--~L~sL~~L~Ls~c~~L~~~p---~~--------~~nL~~L~Ls~n-~i~~iP~si--~~ 867 (1153)
T PLN03210 805 EHLEIENCINLETL-PTGI--NLESLESLDLSGCSRLRTFP---DI--------STNISDLNLSRT-GIEEVPWWI--EK 867 (1153)
T ss_pred CEEECCCCCCcCee-CCCC--CccccCEEECCCCCcccccc---cc--------ccccCEeECCCC-CCccChHHH--hc
Confidence 55555555444444 3222 34445555555554443221 00 224555555443 444444433 56
Q ss_pred CCcccEEeeccCcCcccccccccC
Q 044144 314 WPALEIFSVFRCDKLKIFAADLSQ 337 (356)
Q Consensus 314 ~~~L~~L~i~~C~~l~~l~~~~~~ 337 (356)
+++|+.|++.+|++++.+|.....
T Consensus 868 l~~L~~L~L~~C~~L~~l~~~~~~ 891 (1153)
T PLN03210 868 FSNLSFLDMNGCNNLQRVSLNISK 891 (1153)
T ss_pred CCCCCEEECCCCCCcCccCccccc
Confidence 889999999999999999876543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.56 E-value=1.8e-14 Score=151.85 Aligned_cols=37 Identities=14% Similarity=0.106 Sum_probs=16.7
Q ss_pred cccccceeecCCc-cccccccccCCCcCeEEecceeee
Q 044144 178 TTYSSSEITLDTS-TLLFNEKVALPNLEALEISAINVD 214 (356)
Q Consensus 178 ~~l~~l~i~~~~~-~~l~~~~~~l~~L~~L~l~~~~l~ 214 (356)
..++.|+++.+.. ...+..+..+++|+.|.+.+|+++
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeee
Confidence 3344444444432 223334444555555555555443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.52 E-value=5e-14 Score=148.57 Aligned_cols=236 Identities=16% Similarity=0.096 Sum_probs=110.5
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccc
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKV 81 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 81 (356)
+++|++|++.+...... . ..+.+++|++|++++| .+... .+..++.+++|++|+++++.-...+|...
T Consensus 117 l~~L~~L~Ls~n~l~~~-~---p~~~l~~L~~L~Ls~n-~~~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~~--- 184 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGS-I---PRGSIPNLETLDLSNN-MLSGE----IPNDIGSFSSLKVLDLGGNVLVGKIPNSL--- 184 (968)
T ss_pred CCCCCEEECcCCccccc-c---CccccCCCCEEECcCC-ccccc----CChHHhcCCCCCEEECccCcccccCChhh---
Confidence 56788888877543221 1 2246788888888877 33211 13345667788888887754333343322
Q ss_pred cCCCCccEEEEccCCCccccCc----hhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceee
Q 044144 82 ESFNELKIIQAYNCDKLSNIFW----LSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFC 157 (356)
Q Consensus 82 ~~l~~L~~L~l~~c~~l~~~~~----l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 157 (356)
..+++|+.|++++|.-...++. +..+ +.| .+.++.-...++. .+..+++|++|+++++.-...++
T Consensus 185 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-~~L-~L~~n~l~~~~p~---------~l~~l~~L~~L~L~~n~l~~~~p 253 (968)
T PLN00113 185 TNLTSLEFLTLASNQLVGQIPRELGQMKSL-KWI-YLGYNNLSGEIPY---------EIGGLTSLNHLDLVYNNLTGPIP 253 (968)
T ss_pred hhCcCCCeeeccCCCCcCcCChHHcCcCCc-cEE-ECcCCccCCcCCh---------hHhcCCCCCEEECcCceeccccC
Confidence 4567777777777654333221 2222 333 4444432222221 23344555555554432111111
Q ss_pred cCCCCCCC------CCCC----CCCccccccccccceeecCCc-cccccccccCCCcCeEEecceeeeEEcccCCCCCCC
Q 044144 158 REVKTPSA------SPNR----PASQEESTTTYSSSEITLDTS-TLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAV 226 (356)
Q Consensus 158 ~~~~~~~~------~~~~----~~~~~~~~~~l~~l~i~~~~~-~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~ 226 (356)
........ ..+. .......+..++.++++.+.. ...+..+..+++|+.|++.+|.++.. .|. .
T Consensus 254 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~-----~~~-~ 327 (968)
T PLN00113 254 SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK-----IPV-A 327 (968)
T ss_pred hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCc-----CCh-h
Confidence 00000000 0000 000011233455555554442 23344445556666666666544331 221 2
Q ss_pred CCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCc
Q 044144 227 FPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 227 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 268 (356)
+..+++|+.|++++|.-...+ | ..++.+++|+.|++++|.
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~-p-~~l~~~~~L~~L~Ls~n~ 367 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEI-P-KNLGKHNNLTVLDLSTNN 367 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcC-C-hHHhCCCCCcEEECCCCe
Confidence 445566666666654322222 3 334555666666666554
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.21 E-value=5.6e-13 Score=126.24 Aligned_cols=288 Identities=14% Similarity=0.135 Sum_probs=152.3
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccc
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKV 81 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 81 (356)
+++|++|.+.+.. +..+-.. ...+|.||++.+..+ +++ .++.+..+..+.-|..|++++ ..+++.|.+.
T Consensus 54 lqkLEHLs~~HN~-L~~vhGE--Ls~Lp~LRsv~~R~N-~LK---nsGiP~diF~l~dLt~lDLSh-NqL~EvP~~L--- 122 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQ-LISVHGE--LSDLPRLRSVIVRDN-NLK---NSGIPTDIFRLKDLTILDLSH-NQLREVPTNL--- 122 (1255)
T ss_pred Hhhhhhhhhhhhh-hHhhhhh--hccchhhHHHhhhcc-ccc---cCCCCchhcccccceeeecch-hhhhhcchhh---
Confidence 5678888886543 2233222 237888888888776 565 555566777778888888887 5566666443
Q ss_pred cCCCCccEEEEccCCCccccCc--hhhh------------hcccc-ccccccchhhhhcccccccC--cccccccccccE
Q 044144 82 ESFNELKIIQAYNCDKLSNIFW--LSTV------------VNHSS-TVVNCSKMKEIFAIGEEVDN--SIEKIELAQLRY 144 (356)
Q Consensus 82 ~~l~~L~~L~l~~c~~l~~~~~--l~~l------------l~~L~-~i~~c~~L~~l~~~~~~~~~--~~~~~~~~~L~~ 144 (356)
..-.++-.|++++. ++..+|. +.++ |+.|. ++.....|+.+...+..... -.....+.+|..
T Consensus 123 E~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~v 201 (1255)
T KOG0444|consen 123 EYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSV 201 (1255)
T ss_pred hhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhh
Confidence 22345555555542 2222221 1111 01111 11122222222110000000 001112333444
Q ss_pred EecCCCCCc-ceeecCCCCCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCC
Q 044144 145 LSLGNLPEV-TSFCREVKTPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIP 223 (356)
Q Consensus 145 L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p 223 (356)
|.+++..+. .+++.. ...+.++..++++-..-..+++.+-.+++|++|++++++++.+-...
T Consensus 202 Lhms~TqRTl~N~Pts--------------ld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~--- 264 (1255)
T KOG0444|consen 202 LHMSNTQRTLDNIPTS--------------LDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE--- 264 (1255)
T ss_pred hhcccccchhhcCCCc--------------hhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH---
Confidence 444443221 111111 11344455666654444446777778899999999999887742111
Q ss_pred CCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCc------------------------ccceeeccCCC
Q 044144 224 AAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCE------------------------DLQEIISENRA 279 (356)
Q Consensus 224 ~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~------------------------~l~~i~~~~~~ 279 (356)
.--.+|++|.+++ ++++.+ | +.+..+++|+.|++.++. .++.+ +++.
T Consensus 265 ----~~W~~lEtLNlSr-NQLt~L-P-~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElV--PEgl 335 (1255)
T KOG0444|consen 265 ----GEWENLETLNLSR-NQLTVL-P-DAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELV--PEGL 335 (1255)
T ss_pred ----HHHhhhhhhcccc-chhccc-h-HHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccC--chhh
Confidence 0123445555544 344444 4 223344444444444432 13333 3444
Q ss_pred CcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCccccccccc
Q 044144 280 DEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAADLS 336 (356)
Q Consensus 280 ~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~ 336 (356)
.. +++|+.|.+ +|..|..+|..+ +-++.|+.|+++..|++..-|-...
T Consensus 336 cR------C~kL~kL~L-~~NrLiTLPeaI--HlL~~l~vLDlreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 336 CR------CVKLQKLKL-DHNRLITLPEAI--HLLPDLKVLDLRENPNLVMPPKPND 383 (1255)
T ss_pred hh------hHHHHHhcc-cccceeechhhh--hhcCCcceeeccCCcCccCCCCcch
Confidence 44 788888888 567888998887 6789999999999999988775543
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.19 E-value=4.5e-13 Score=126.88 Aligned_cols=300 Identities=18% Similarity=0.200 Sum_probs=183.7
Q ss_pred cceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccc--ccccccc
Q 044144 4 NVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERI--WIDQLKV 81 (356)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~~~~~ 81 (356)
+++-|.|.+- ++.-+ +...+.+.+|+.|.+..+ ++..+ .+.++.+|+|+++.+.+ .+++.- |...
T Consensus 33 ~~~WLkLnrt-~L~~v--PeEL~~lqkLEHLs~~HN-~L~~v-----hGELs~Lp~LRsv~~R~-N~LKnsGiP~di--- 99 (1255)
T KOG0444|consen 33 QMTWLKLNRT-KLEQV--PEELSRLQKLEHLSMAHN-QLISV-----HGELSDLPRLRSVIVRD-NNLKNSGIPTDI--- 99 (1255)
T ss_pred heeEEEechh-hhhhC--hHHHHHHhhhhhhhhhhh-hhHhh-----hhhhccchhhHHHhhhc-cccccCCCCchh---
Confidence 4555666442 22222 234568999999999988 55544 34577789999999887 555543 2222
Q ss_pred cCCCCccEEEEccCCCccccCc-hhhhhccccccccc--cchhhhhccc----------cccc-----Cccccccccccc
Q 044144 82 ESFNELKIIQAYNCDKLSNIFW-LSTVVNHSSTVVNC--SKMKEIFAIG----------EEVD-----NSIEKIELAQLR 143 (356)
Q Consensus 82 ~~l~~L~~L~l~~c~~l~~~~~-l~~ll~~L~~i~~c--~~L~~l~~~~----------~~~~-----~~~~~~~~~~L~ 143 (356)
-.+..|..|++++. +++..|. +... +++ .+-+. .+++.||... +-.+ -...+..+..|+
T Consensus 100 F~l~dLt~lDLShN-qL~EvP~~LE~A-Kn~-iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 100 FRLKDLTILDLSHN-QLREVPTNLEYA-KNS-IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQ 176 (1255)
T ss_pred cccccceeeecchh-hhhhcchhhhhh-cCc-EEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhh
Confidence 33678888888873 6666653 3333 222 11111 1233332210 0000 123455667888
Q ss_pred EEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceeecCC--ccccccccccCCCcCeEEecceeeeEEcccCC
Q 044144 144 YLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEITLDT--STLLFNEKVALPNLEALEISAINVDKIWHYNQ 221 (356)
Q Consensus 144 ~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~--~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~ 221 (356)
+|.+++-|- ..+.....| .++.++.|.+++.. ...++.++..+.+|..++++.++++.
T Consensus 177 tL~Ls~NPL-~hfQLrQLP-------------smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~------ 236 (1255)
T KOG0444|consen 177 TLKLSNNPL-NHFQLRQLP-------------SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI------ 236 (1255)
T ss_pred hhhcCCChh-hHHHHhcCc-------------cchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc------
Confidence 888887652 122111111 34457777776443 45588889999999999999988877
Q ss_pred CCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCc-------------------C
Q 044144 222 IPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADE-------------------V 282 (356)
Q Consensus 222 ~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~-------------------~ 282 (356)
.|.. +..+++|++|.+++ ++++.+ .... +.-.+|++|+++.+. +..+ ++.... +
T Consensus 237 vPec-ly~l~~LrrLNLS~-N~iteL-~~~~-~~W~~lEtLNlSrNQ-Lt~L--P~avcKL~kL~kLy~n~NkL~FeGiP 309 (1255)
T KOG0444|consen 237 VPEC-LYKLRNLRRLNLSG-NKITEL-NMTE-GEWENLETLNLSRNQ-LTVL--PDAVCKLTKLTKLYANNNKLTFEGIP 309 (1255)
T ss_pred chHH-HhhhhhhheeccCc-Cceeee-eccH-HHHhhhhhhccccch-hccc--hHHHhhhHHHHHHHhccCcccccCCc
Confidence 5553 34789999999987 688887 4332 334789999999865 5443 222222 0
Q ss_pred cccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCcccccccccCCCCCCCCCCCCCC
Q 044144 283 IPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAADLSQNNENDQLGIPAQQ 350 (356)
Q Consensus 283 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~ 350 (356)
..+..+..|+.+...+. +|.-+|++. ..|+.|++|.+. |..+..+|.........+.+.+..++
T Consensus 310 SGIGKL~~Levf~aanN-~LElVPEgl--cRC~kL~kL~L~-~NrLiTLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 310 SGIGKLIQLEVFHAANN-KLELVPEGL--CRCVKLQKLKLD-HNRLITLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred cchhhhhhhHHHHhhcc-ccccCchhh--hhhHHHHHhccc-ccceeechhhhhhcCCcceeeccCCc
Confidence 11223445555555443 677777776 788889998765 67788899888776666666666544
No 7
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.16 E-value=4.2e-13 Score=121.53 Aligned_cols=297 Identities=15% Similarity=0.092 Sum_probs=185.8
Q ss_pred cceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccC
Q 044144 4 NVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVES 83 (356)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 83 (356)
.++.|++++|..++..........+|+++.|.+.+|.+++. .........+++|+.+.+..|.++++....... ..
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd---~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la-~g 214 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITD---SSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA-EG 214 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccH---HHHHHHHHhcchhhhhhhcccchhHHHHHHHHH-Hh
Confidence 46788899988887766666667889999999999976652 222224456789999999999988876433222 34
Q ss_pred CCCccEEEEccCCCccccCchhhhhccccccccccchhhhhcccccccCcc----cccccccccEEecCCCCCcceeecC
Q 044144 84 FNELKIIQAYNCDKLSNIFWLSTVVNHSSTVVNCSKMKEIFAIGEEVDNSI----EKIELAQLRYLSLGNLPEVTSFCRE 159 (356)
Q Consensus 84 l~~L~~L~l~~c~~l~~~~~l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~l~~~~~~ 159 (356)
+++|++|+++.|+.+..- .+ +. ..++|..++.+...|....+.. .-...+-+.++++.+|..+++....
T Consensus 215 C~kL~~lNlSwc~qi~~~----gv-~~--~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~ 287 (483)
T KOG4341|consen 215 CRKLKYLNLSWCPQISGN----GV-QA--LQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLW 287 (483)
T ss_pred hhhHHHhhhccCchhhcC----cc-hH--HhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHH
Confidence 899999999999888751 11 11 1233333333321111110000 0112344555666666655543211
Q ss_pred CCCCCCCCCCCCCccccccccccceeecCCccc---cccccccCCCcCeEEecce-eeeEEcccCCCCCCCCCCCcCccE
Q 044144 160 VKTPSASPNRPASQEESTTTYSSSEITLDTSTL---LFNEKVALPNLEALEISAI-NVDKIWHYNQIPAAVFPRFQNLTR 235 (356)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~---l~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~p~~~~~~l~~L~~ 235 (356)
...- .-..++.+..++|++.. +-.-..+.++|+.+.+.+| ++++..... + -.+.+.|+.
T Consensus 288 ~i~~------------~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~-l----~rn~~~Le~ 350 (483)
T KOG4341|consen 288 LIAC------------GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM-L----GRNCPHLER 350 (483)
T ss_pred HHhh------------hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh-h----hcCChhhhh
Confidence 0000 12336677777776522 2223456799999999999 777642221 1 226788999
Q ss_pred EeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCc-CcccccCCccCeeeccccccceeecCCCCcCCC
Q 044144 236 LIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADE-VIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEW 314 (356)
Q Consensus 236 L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~-~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~ 314 (356)
+++.+|....+-.-.....+++.|+.|.++.|..+.. ++..+ .........|+.+++.+||.+++-..... ..+
T Consensus 351 l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD----~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l-~~c 425 (483)
T KOG4341|consen 351 LDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD----EGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHL-SIC 425 (483)
T ss_pred hcccccceehhhhHhhhccCCchhccCChhhhhhhhh----hhhhhhhhccccccccceeeecCCCCchHHHHHHH-hhC
Confidence 9999998877763335566899999999999875432 21111 00111255799999999999887655432 578
Q ss_pred CcccEEeeccCcCcccccc
Q 044144 315 PALEIFSVFRCDKLKIFAA 333 (356)
Q Consensus 315 ~~L~~L~i~~C~~l~~l~~ 333 (356)
++|+.+++++|..+.+=+.
T Consensus 426 ~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 426 RNLERIELIDCQDVTKEAI 444 (483)
T ss_pred cccceeeeechhhhhhhhh
Confidence 8999999999998866543
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.07 E-value=6.9e-11 Score=111.47 Aligned_cols=290 Identities=16% Similarity=0.164 Sum_probs=161.6
Q ss_pred cceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccC
Q 044144 4 NVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVES 83 (356)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 83 (356)
+++.|.|.+-. +.++ .......++.|++|+++.+ .+.++... ....-+++++|++.+ ..++.+..+.+ ..
T Consensus 126 hl~~L~L~~N~-I~sv-~se~L~~l~alrslDLSrN-~is~i~~~----sfp~~~ni~~L~La~-N~It~l~~~~F--~~ 195 (873)
T KOG4194|consen 126 HLEKLDLRHNL-ISSV-TSEELSALPALRSLDLSRN-LISEIPKP----SFPAKVNIKKLNLAS-NRITTLETGHF--DS 195 (873)
T ss_pred ceeEEeeeccc-cccc-cHHHHHhHhhhhhhhhhhc-hhhcccCC----CCCCCCCceEEeecc-ccccccccccc--cc
Confidence 47777775432 1222 2334456788888888887 66665221 222234678887777 45555533322 23
Q ss_pred CCCccEEEEccCCCccccCc-----hhhhhcccc------------ccccccchhhhhcc--cccccCcccccccccccE
Q 044144 84 FNELKIIQAYNCDKLSNIFW-----LSTVVNHSS------------TVVNCSKMKEIFAI--GEEVDNSIEKIELAQLRY 144 (356)
Q Consensus 84 l~~L~~L~l~~c~~l~~~~~-----l~~ll~~L~------------~i~~c~~L~~l~~~--~~~~~~~~~~~~~~~L~~ 144 (356)
|.+|-.|.+++. +++.++. ++.+ +.|. ...+.++|+.+.-- +...-....+..+.++++
T Consensus 196 lnsL~tlkLsrN-rittLp~r~Fk~L~~L-~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~ 273 (873)
T KOG4194|consen 196 LNSLLTLKLSRN-RITTLPQRSFKRLPKL-ESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEH 273 (873)
T ss_pred cchheeeecccC-cccccCHHHhhhcchh-hhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccce
Confidence 567777777653 3343332 2222 2221 11222222222100 000000112333344444
Q ss_pred EecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceeecCCccc-cccccccCCCcCeEEecceeeeEEcccCCCC
Q 044144 145 LSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEITLDTSTL-LFNEKVALPNLEALEISAINVDKIWHYNQIP 223 (356)
Q Consensus 145 L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p 223 (356)
|.++. .+++....+- .+.++.+++|+++...-.. -......+++|+.|+++.++++. ++
T Consensus 274 l~L~~-N~l~~vn~g~-------------lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~------l~ 333 (873)
T KOG4194|consen 274 LNLET-NRLQAVNEGW-------------LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR------LD 333 (873)
T ss_pred eeccc-chhhhhhccc-------------ccccchhhhhccchhhhheeecchhhhcccceeEecccccccc------CC
Confidence 44432 1111111110 1134556666666554211 22233456788889888888887 45
Q ss_pred CCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccce
Q 044144 224 AAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLR 303 (356)
Q Consensus 224 ~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~ 303 (356)
+..|..+..|++|.+++ +.+..+ -...+..+.+|+.|+++.+. +...+ +++. +....+++|+.|.+.+. +++
T Consensus 334 ~~sf~~L~~Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N~-ls~~I-EDaa---~~f~gl~~LrkL~l~gN-qlk 405 (873)
T KOG4194|consen 334 EGSFRVLSQLEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSNE-LSWCI-EDAA---VAFNGLPSLRKLRLTGN-QLK 405 (873)
T ss_pred hhHHHHHHHhhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCCe-EEEEE-ecch---hhhccchhhhheeecCc-eee
Confidence 44577788899998887 677777 66777888899999998865 54443 2322 12334889999999876 899
Q ss_pred eecCCCCcCCCCcccEEeeccCcCcccccccc
Q 044144 304 CLYPGMHTSEWPALEIFSVFRCDKLKIFAADL 335 (356)
Q Consensus 304 ~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~ 335 (356)
.++.... ..+++|++|++.+.+ +.++..+.
T Consensus 406 ~I~krAf-sgl~~LE~LdL~~Na-iaSIq~nA 435 (873)
T KOG4194|consen 406 SIPKRAF-SGLEALEHLDLGDNA-IASIQPNA 435 (873)
T ss_pred ecchhhh-ccCcccceecCCCCc-ceeecccc
Confidence 9987653 578899999988865 55554443
No 9
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.02 E-value=1.5e-10 Score=118.66 Aligned_cols=274 Identities=19% Similarity=0.164 Sum_probs=169.7
Q ss_pred ccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCch
Q 044144 25 TEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFWL 104 (356)
Q Consensus 25 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~l 104 (356)
+..+|.|+.|++++|..+..+ +..++.+-+|+.|++++ +.+..+|.+. +.|..|.+|++.....+..++..
T Consensus 567 f~~m~~LrVLDLs~~~~l~~L-----P~~I~~Li~LryL~L~~-t~I~~LP~~l---~~Lk~L~~Lnl~~~~~l~~~~~i 637 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKL-----PSSIGELVHLRYLDLSD-TGISHLPSGL---GNLKKLIYLNLEVTGRLESIPGI 637 (889)
T ss_pred HhhCcceEEEECCCCCccCcC-----ChHHhhhhhhhcccccC-CCccccchHH---HHHHhhheeccccccccccccch
Confidence 457899999999998888776 55688888999999988 6788887666 67888889988887766655322
Q ss_pred hh-hhcccc--ccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccc--
Q 044144 105 ST-VVNHSS--TVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTT-- 179 (356)
Q Consensus 105 ~~-ll~~L~--~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 179 (356)
.. + ..|+ .+..-. .. ...........+..|+.+++..... . +..... .+..
T Consensus 638 ~~~L-~~Lr~L~l~~s~----~~---~~~~~l~el~~Le~L~~ls~~~~s~-~-~~e~l~--------------~~~~L~ 693 (889)
T KOG4658|consen 638 LLEL-QSLRVLRLPRSA----LS---NDKLLLKELENLEHLENLSITISSV-L-LLEDLL--------------GMTRLR 693 (889)
T ss_pred hhhc-ccccEEEeeccc----cc---cchhhHHhhhcccchhhheeecchh-H-hHhhhh--------------hhHHHH
Confidence 21 2 2221 111100 00 0000011123334444444433221 0 000000 0111
Q ss_pred --cccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCC-CCcCccEEeeccCcCccccchhhhhhhc
Q 044144 180 --YSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFP-RFQNLTRLIVWHCNKLKYIFSASMIGSL 256 (356)
Q Consensus 180 --l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~-~l~~L~~L~i~~c~~l~~l~~~~~~~~l 256 (356)
...+.+..+.....+.....+++|+.|.|.+|...++-... ..+.... .|+++.++.+.+|..++++ .+....
T Consensus 694 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~-~~~~~~~~~f~~l~~~~~~~~~~~r~l---~~~~f~ 769 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEW-EESLIVLLCFPNLSKVSILNCHMLRDL---TWLLFA 769 (889)
T ss_pred HHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhccc-ccccchhhhHHHHHHHHhhcccccccc---chhhcc
Confidence 11222223344556667788999999999999554321100 1111111 3778999999999999988 344556
Q ss_pred CCCCeEEEecCcccceeeccCCCCcCc--ccccCCccCee-eccccccceeecCCCCcCCCCcccEEeeccCcCcccccc
Q 044144 257 KHLQHLEVRFCEDLQEIISENRADEVI--PYFVFPQLTTL-ILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAA 333 (356)
Q Consensus 257 ~~L~~L~i~~c~~l~~i~~~~~~~~~~--~~~~l~~L~~L-~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~ 333 (356)
++|+.|++..|..++++++........ .+..|..+..+ .+.+.+.++.+.... ..++.++.+.+..||++.++|.
T Consensus 770 ~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~--l~~~~l~~~~ve~~p~l~~~P~ 847 (889)
T KOG4658|consen 770 PHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLP--LSFLKLEELIVEECPKLGKLPL 847 (889)
T ss_pred CcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecc--cCccchhheehhcCcccccCcc
Confidence 999999999999998887655443311 24556777777 577777777776665 4566799999999999999998
Q ss_pred cccC
Q 044144 334 DLSQ 337 (356)
Q Consensus 334 ~~~~ 337 (356)
....
T Consensus 848 ~~~~ 851 (889)
T KOG4658|consen 848 LSTL 851 (889)
T ss_pred cccc
Confidence 8653
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.98 E-value=2.4e-10 Score=107.89 Aligned_cols=110 Identities=19% Similarity=0.271 Sum_probs=72.1
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeecc
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISE 276 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~ 276 (356)
+..+++|+.|++..+++.. +..+.|..+.+++.|++.. +++..+ ..+++.++++|++|+++++. ++.+- .
T Consensus 241 FqgL~Sl~nlklqrN~I~k------L~DG~Fy~l~kme~l~L~~-N~l~~v-n~g~lfgLt~L~~L~lS~Na-I~rih-~ 310 (873)
T KOG4194|consen 241 FQGLPSLQNLKLQRNDISK------LDDGAFYGLEKMEHLNLET-NRLQAV-NEGWLFGLTSLEQLDLSYNA-IQRIH-I 310 (873)
T ss_pred hcCchhhhhhhhhhcCccc------ccCcceeeecccceeeccc-chhhhh-hcccccccchhhhhccchhh-hheee-c
Confidence 4567888888888876665 3333477788888888865 677777 66788888888888888754 65552 3
Q ss_pred CCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeecc
Q 044144 277 NRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFR 324 (356)
Q Consensus 277 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~ 324 (356)
+.+.. .++|++|++++. .++.+.++.. ..+..|++|.+.+
T Consensus 311 d~Wsf------tqkL~~LdLs~N-~i~~l~~~sf-~~L~~Le~LnLs~ 350 (873)
T KOG4194|consen 311 DSWSF------TQKLKELDLSSN-RITRLDEGSF-RVLSQLEELNLSH 350 (873)
T ss_pred chhhh------cccceeEecccc-ccccCChhHH-HHHHHhhhhcccc
Confidence 44554 677888877654 5666555432 2334445444443
No 11
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.92 E-value=9.2e-09 Score=103.68 Aligned_cols=238 Identities=15% Similarity=0.093 Sum_probs=120.8
Q ss_pred eEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCC
Q 044144 6 ECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFN 85 (356)
Q Consensus 6 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~ 85 (356)
..|++.+. ++..+ +. .. .++|+.|.+.++ +++.++ ...++|++|++++. +++.+|.. .+
T Consensus 204 ~~LdLs~~-~LtsL-P~-~l--~~~L~~L~L~~N-~Lt~LP--------~lp~~Lk~LdLs~N-~LtsLP~l------p~ 262 (788)
T PRK15387 204 AVLNVGES-GLTTL-PD-CL--PAHITTLVIPDN-NLTSLP--------ALPPELRTLEVSGN-QLTSLPVL------PP 262 (788)
T ss_pred cEEEcCCC-CCCcC-Cc-ch--hcCCCEEEccCC-cCCCCC--------CCCCCCcEEEecCC-ccCcccCc------cc
Confidence 45666555 34432 22 11 247888888876 666551 12478888988884 67766532 46
Q ss_pred CccEEEEccCCCccccCchh-hhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCC
Q 044144 86 ELKIIQAYNCDKLSNIFWLS-TVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPS 164 (356)
Q Consensus 86 ~L~~L~l~~c~~l~~~~~l~-~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 164 (356)
+|+.|++.++. +..++.++ .+ +.| .+.++ .++.++. .+++|+.|++++. +++.++.. +
T Consensus 263 sL~~L~Ls~N~-L~~Lp~lp~~L-~~L-~Ls~N-~Lt~LP~------------~p~~L~~LdLS~N-~L~~Lp~l--p-- 321 (788)
T PRK15387 263 GLLELSIFSNP-LTHLPALPSGL-CKL-WIFGN-QLTSLPV------------LPPGLQELSVSDN-QLASLPAL--P-- 321 (788)
T ss_pred ccceeeccCCc-hhhhhhchhhc-CEE-ECcCC-ccccccc------------cccccceeECCCC-ccccCCCC--c--
Confidence 88888887763 55554322 23 555 55554 3444442 2367888888774 44443321 0
Q ss_pred CCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccC--------------CCCCCCCCCC
Q 044144 165 ASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYN--------------QIPAAVFPRF 230 (356)
Q Consensus 165 ~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~--------------~~p~~~~~~l 230 (356)
..+..|.++.+.-..++. ..++|+.|++++|+++.+-... .+|. ..
T Consensus 322 -------------~~L~~L~Ls~N~L~~LP~---lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~~LP~----l~ 381 (788)
T PRK15387 322 -------------SELCKLWAYNNQLTSLPT---LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPA----LP 381 (788)
T ss_pred -------------ccccccccccCccccccc---cccccceEecCCCccCCCCCCCcccceehhhccccccCcc----cc
Confidence 013333333332211111 0124555555555444310000 0221 11
Q ss_pred cCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCC
Q 044144 231 QNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMH 310 (356)
Q Consensus 231 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~ 310 (356)
.+|+.|++++ +.+..+ |.. .++|+.|+++++. +..+. . . ..+|+.|++.++ +++.+|...
T Consensus 382 ~~L~~LdLs~-N~Lt~L-P~l----~s~L~~LdLS~N~-LssIP--~-l--------~~~L~~L~Ls~N-qLt~LP~sl- 441 (788)
T PRK15387 382 SGLKELIVSG-NRLTSL-PVL----PSELKELMVSGNR-LTSLP--M-L--------PSGLLSLSVYRN-QLTRLPESL- 441 (788)
T ss_pred cccceEEecC-CcccCC-CCc----ccCCCEEEccCCc-CCCCC--c-c--------hhhhhhhhhccC-cccccChHH-
Confidence 3455666654 244444 311 2456666666654 43331 1 1 235666777654 566666543
Q ss_pred cCCCCcccEEeeccCc
Q 044144 311 TSEWPALEIFSVFRCD 326 (356)
Q Consensus 311 ~~~~~~L~~L~i~~C~ 326 (356)
..+++|+.|++.+++
T Consensus 442 -~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 442 -IHLSSETTVNLEGNP 456 (788)
T ss_pred -hhccCCCeEECCCCC
Confidence 567778888887766
No 12
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.85 E-value=5.3e-11 Score=108.10 Aligned_cols=281 Identities=14% Similarity=0.081 Sum_probs=168.7
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCccc-ccccCcccceeecccccccccccccccc
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMV-ACDAFPLLESLILHNLINMERIWIDQLK 80 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 80 (356)
.+++++|++.+|..+.+.....-...++.|+.|++.+|..|+.. ... ....+++|++|.++.|+.+.+-....+.
T Consensus 163 CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~----~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 163 CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDV----SLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHH----HHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 36778888888887776644444567888888888888877643 111 3456888888888888877663222222
Q ss_pred ccCCCCccEEEEccCCCccccCc------hhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcc
Q 044144 81 VESFNELKIIQAYNCDKLSNIFW------LSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVT 154 (356)
Q Consensus 81 ~~~l~~L~~L~l~~c~~l~~~~~------l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 154 (356)
....+++++..++|..+..-.. ...+ ..+ ++..|..+.+...+. ....+.+|+.+..++|..+.
T Consensus 239 -rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i-~~l-nl~~c~~lTD~~~~~-------i~~~c~~lq~l~~s~~t~~~ 308 (483)
T KOG4341|consen 239 -RGCKELEKLSLKGCLELELEALLKAAAYCLEI-LKL-NLQHCNQLTDEDLWL-------IACGCHALQVLCYSSCTDIT 308 (483)
T ss_pred -ccchhhhhhhhcccccccHHHHHHHhccChHh-hcc-chhhhccccchHHHH-------HhhhhhHhhhhcccCCCCCc
Confidence 2245677777777776652110 0011 222 344554443332100 01234566667776666655
Q ss_pred eeecCCCCCCCCCCCCCCccccccccccceeecCCccc--ccc-ccccCCCcCeEEecce-eeeEEcccCCCCCCCCCCC
Q 044144 155 SFCREVKTPSASPNRPASQEESTTTYSSSEITLDTSTL--LFN-EKVALPNLEALEISAI-NVDKIWHYNQIPAAVFPRF 230 (356)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~--l~~-~~~~l~~L~~L~l~~~-~l~~~~~~~~~p~~~~~~l 230 (356)
.......-+. -..++.+.+..|..++ .|. ...+.+.|+.+.+.+| ..++--..+ + ..++
T Consensus 309 d~~l~aLg~~------------~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~s-l----s~~C 371 (483)
T KOG4341|consen 309 DEVLWALGQH------------CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLAS-L----SRNC 371 (483)
T ss_pred hHHHHHHhcC------------CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhh-h----ccCC
Confidence 4433222111 1236666666665311 222 2346789999999999 555421111 1 2378
Q ss_pred cCccEEeeccCcCccccch---hhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecC
Q 044144 231 QNLTRLIVWHCNKLKYIFS---ASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYP 307 (356)
Q Consensus 231 ~~L~~L~i~~c~~l~~l~~---~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~ 307 (356)
+.|+++.+++|..+++... .........|+.+++.+|+.+.+..- +... ..+.|+.+++.+|..++.-+.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~L-e~l~------~c~~Leri~l~~~q~vtk~~i 444 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATL-EHLS------ICRNLERIELIDCQDVTKEAI 444 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHH-HHHh------hCcccceeeeechhhhhhhhh
Confidence 9999999999998888611 11223456899999999998755421 2222 267899999999988877666
Q ss_pred CCCcCCCCcccEE
Q 044144 308 GMHTSEWPALEIF 320 (356)
Q Consensus 308 ~~~~~~~~~L~~L 320 (356)
.....++|+++..
T Consensus 445 ~~~~~~lp~i~v~ 457 (483)
T KOG4341|consen 445 SRFATHLPNIKVH 457 (483)
T ss_pred HHHHhhCccceeh
Confidence 5544566665544
No 13
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.84 E-value=3.3e-11 Score=108.98 Aligned_cols=243 Identities=17% Similarity=0.183 Sum_probs=160.0
Q ss_pred cccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCchh
Q 044144 26 EGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFWLS 105 (356)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~l~ 105 (356)
..++.|.+|++... ++..+ +.+++.+..++.+..++ .++.++|... .+.++|++++++.. .++.++.
T Consensus 65 ~nL~~l~vl~~~~n-~l~~l-----p~aig~l~~l~~l~vs~-n~ls~lp~~i---~s~~~l~~l~~s~n-~~~el~~-- 131 (565)
T KOG0472|consen 65 KNLACLTVLNVHDN-KLSQL-----PAAIGELEALKSLNVSH-NKLSELPEQI---GSLISLVKLDCSSN-ELKELPD-- 131 (565)
T ss_pred hcccceeEEEeccc-hhhhC-----CHHHHHHHHHHHhhccc-chHhhccHHH---hhhhhhhhhhcccc-ceeecCc--
Confidence 45666666666666 33322 45666777777777776 5566666555 55677777777653 2222221
Q ss_pred hhhccccccccccchhhhhccccc-ccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccce
Q 044144 106 TVVNHSSTVVNCSKMKEIFAIGEE-VDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSE 184 (356)
Q Consensus 106 ~ll~~L~~i~~c~~L~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 184 (356)
.|++|..++.+...... .....+++.+.+|..+.+.+ .+++.++.... ++..+++++
T Consensus 132 -------~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~-n~l~~l~~~~i--------------~m~~L~~ld 189 (565)
T KOG0472|consen 132 -------SIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEG-NKLKALPENHI--------------AMKRLKHLD 189 (565)
T ss_pred -------hHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccc-cchhhCCHHHH--------------HHHHHHhcc
Confidence 33444444433321100 01123455566677776665 33444433322 455577776
Q ss_pred eecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEE
Q 044144 185 ITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEV 264 (356)
Q Consensus 185 i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i 264 (356)
.....-.++|+.++.+.+|..|+++.+++.. +|. |+.+..|+.|++.. +.++.+ |.+..+.++++..|++
T Consensus 190 ~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~------lPe--f~gcs~L~Elh~g~-N~i~~l-pae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 190 CNSNLLETLPPELGGLESLELLYLRRNKIRF------LPE--FPGCSLLKELHVGE-NQIEML-PAEHLKHLNSLLVLDL 259 (565)
T ss_pred cchhhhhcCChhhcchhhhHHHHhhhccccc------CCC--CCccHHHHHHHhcc-cHHHhh-HHHHhcccccceeeec
Confidence 5555567789999999999999999998887 664 77889999999964 788888 9999999999999999
Q ss_pred ecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 265 RFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 265 ~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
++.. ++++ ++++.- +.+|+.|++++. .+.++|... ..+ .|+.|.+.|.|
T Consensus 260 RdNk-lke~--Pde~cl------LrsL~rLDlSNN-~is~Lp~sL--gnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 260 RDNK-LKEV--PDEICL------LRSLERLDLSNN-DISSLPYSL--GNL-HLKFLALEGNP 308 (565)
T ss_pred cccc-cccC--chHHHH------hhhhhhhcccCC-ccccCCccc--ccc-eeeehhhcCCc
Confidence 9976 8887 355544 778999999876 777777665 445 67777666665
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.79 E-value=2.9e-08 Score=100.13 Aligned_cols=219 Identities=16% Similarity=0.080 Sum_probs=119.0
Q ss_pred cceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccccccc-----
Q 044144 4 NVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQ----- 78 (356)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~----- 78 (356)
+++.|.+.+. .+..+ +. ..++|++|+++++ +++.+.. .+++|++|++.++ .+..++...
T Consensus 223 ~L~~L~L~~N-~Lt~L-P~----lp~~Lk~LdLs~N-~LtsLP~--------lp~sL~~L~Ls~N-~L~~Lp~lp~~L~~ 286 (788)
T PRK15387 223 HITTLVIPDN-NLTSL-PA----LPPELRTLEVSGN-QLTSLPV--------LPPGLLELSIFSN-PLTHLPALPSGLCK 286 (788)
T ss_pred CCCEEEccCC-cCCCC-CC----CCCCCcEEEecCC-ccCcccC--------cccccceeeccCC-chhhhhhchhhcCE
Confidence 4566777553 33332 11 3578899999887 6765511 1345666665553 233332110
Q ss_pred ----------ccccCCCCccEEEEccCCCccccCchhhhhccccccccccchhhhhcccccccCcccccccccccEEecC
Q 044144 79 ----------LKVESFNELKIIQAYNCDKLSNIFWLSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLG 148 (356)
Q Consensus 79 ----------~~~~~l~~L~~L~l~~c~~l~~~~~l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~ 148 (356)
++ ..+++|+.|+++++ ++..++.++.-|+.| .+.++. +..++. ...+|+.|+++
T Consensus 287 L~Ls~N~Lt~LP-~~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L-~Ls~N~-L~~LP~------------lp~~Lq~LdLS 350 (788)
T PRK15387 287 LWIFGNQLTSLP-VLPPGLQELSVSDN-QLASLPALPSELCKL-WAYNNQ-LTSLPT------------LPSGLQELSVS 350 (788)
T ss_pred EECcCCcccccc-ccccccceeECCCC-ccccCCCCccccccc-ccccCc-cccccc------------cccccceEecC
Confidence 00 01245555555553 333333221111333 333321 222221 11367788887
Q ss_pred CCCCcceeecCCCCCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCC
Q 044144 149 NLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFP 228 (356)
Q Consensus 149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~ 228 (356)
+. +++.++.. ...+..|.++.+.-..++. ..++|+.|++.+|+++. +|.
T Consensus 351 ~N-~Ls~LP~l-----------------p~~L~~L~Ls~N~L~~LP~---l~~~L~~LdLs~N~Lt~------LP~---- 399 (788)
T PRK15387 351 DN-QLASLPTL-----------------PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTS------LPV---- 399 (788)
T ss_pred CC-ccCCCCCC-----------------CcccceehhhccccccCcc---cccccceEEecCCcccC------CCC----
Confidence 63 44444321 1124455554443222332 23579999999998876 443
Q ss_pred CCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccc
Q 044144 229 RFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLP 300 (356)
Q Consensus 229 ~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~ 300 (356)
..++|+.|+++++ .+..+ |.. ..+|+.|+++++. +..+ ++.... +++|+.|++.+++
T Consensus 400 l~s~L~~LdLS~N-~LssI-P~l----~~~L~~L~Ls~Nq-Lt~L--P~sl~~------L~~L~~LdLs~N~ 456 (788)
T PRK15387 400 LPSELKELMVSGN-RLTSL-PML----PSGLLSLSVYRNQ-LTRL--PESLIH------LSSETTVNLEGNP 456 (788)
T ss_pred cccCCCEEEccCC-cCCCC-Ccc----hhhhhhhhhccCc-cccc--ChHHhh------ccCCCeEECCCCC
Confidence 2368999999884 67776 632 3578889999865 6655 344444 7899999998874
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.73 E-value=2.6e-08 Score=100.70 Aligned_cols=244 Identities=16% Similarity=0.145 Sum_probs=148.5
Q ss_pred cceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccC
Q 044144 4 NVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVES 83 (356)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 83 (356)
+...|++.+. ++..+ +. . -.+.|+.|+++++ +++.++. ..+++|++|++.++ +++.+|...
T Consensus 179 ~~~~L~L~~~-~LtsL-P~-~--Ip~~L~~L~Ls~N-~LtsLP~-------~l~~nL~~L~Ls~N-~LtsLP~~l----- 239 (754)
T PRK15370 179 NKTELRLKIL-GLTTI-PA-C--IPEQITTLILDNN-ELKSLPE-------NLQGNIKTLYANSN-QLTSIPATL----- 239 (754)
T ss_pred CceEEEeCCC-CcCcC-Cc-c--cccCCcEEEecCC-CCCcCCh-------hhccCCCEEECCCC-ccccCChhh-----
Confidence 4556777654 33332 11 1 1257899999887 6776521 22468999999984 577765432
Q ss_pred CCCccEEEEccCCCccccCc-h-hhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCC
Q 044144 84 FNELKIIQAYNCDKLSNIFW-L-STVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVK 161 (356)
Q Consensus 84 l~~L~~L~l~~c~~l~~~~~-l-~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 161 (356)
.++|+.|++++|. +..++. + ..+ +.| .+++ .++..++. ..+++|+.|+++++ +++.++...
T Consensus 240 ~~~L~~L~Ls~N~-L~~LP~~l~s~L-~~L-~Ls~-N~L~~LP~-----------~l~~sL~~L~Ls~N-~Lt~LP~~l- 302 (754)
T PRK15370 240 PDTIQEMELSINR-ITELPERLPSAL-QSL-DLFH-NKISCLPE-----------NLPEELRYLSVYDN-SIRTLPAHL- 302 (754)
T ss_pred hccccEEECcCCc-cCcCChhHhCCC-CEE-ECcC-CccCcccc-----------ccCCCCcEEECCCC-ccccCcccc-
Confidence 4589999999874 445542 1 233 555 6653 45666653 11257899999885 455444211
Q ss_pred CCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccC
Q 044144 162 TPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHC 241 (356)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c 241 (356)
...++.|.++.+.-..++..+ .++|+.|.+.+|.++. +|.. + .++|+.|+++++
T Consensus 303 ---------------p~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~Lt~------LP~~-l--~~sL~~L~Ls~N 356 (754)
T PRK15370 303 ---------------PSGITHLNVQSNSLTALPETL--PPGLKTLEAGENALTS------LPAS-L--PPELQVLDVSKN 356 (754)
T ss_pred ---------------hhhHHHHHhcCCccccCCccc--cccceeccccCCcccc------CChh-h--cCcccEEECCCC
Confidence 112566666665543333322 3689999998887776 3321 2 268999999885
Q ss_pred cCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCC--CcCCCCcccE
Q 044144 242 NKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGM--HTSEWPALEI 319 (356)
Q Consensus 242 ~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~--~~~~~~~L~~ 319 (356)
++..+ |... .++|+.|++++|. +..+. ... .+.|+.|++.++ +++.+|... .....+.+..
T Consensus 357 -~L~~L-P~~l---p~~L~~LdLs~N~-Lt~LP--~~l--------~~sL~~LdLs~N-~L~~LP~sl~~~~~~~~~l~~ 419 (754)
T PRK15370 357 -QITVL-PETL---PPTITTLDVSRNA-LTNLP--ENL--------PAALQIMQASRN-NLVRLPESLPHFRGEGPQPTR 419 (754)
T ss_pred -CCCcC-Chhh---cCCcCEEECCCCc-CCCCC--HhH--------HHHHHHHhhccC-CcccCchhHHHHhhcCCCccE
Confidence 56665 5433 3689999999875 65542 222 236888888775 677766532 1123467788
Q ss_pred EeeccCc
Q 044144 320 FSVFRCD 326 (356)
Q Consensus 320 L~i~~C~ 326 (356)
+++.+.+
T Consensus 420 L~L~~Np 426 (754)
T PRK15370 420 IIVEYNP 426 (754)
T ss_pred EEeeCCC
Confidence 8887766
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.51 E-value=3.7e-07 Score=92.49 Aligned_cols=227 Identities=17% Similarity=0.142 Sum_probs=144.4
Q ss_pred CCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCc-h-hh
Q 044144 29 SQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFW-L-ST 106 (356)
Q Consensus 29 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-l-~~ 106 (356)
.+...|++.+. +++.++. .+ .++|+.|++++. +++.+|... +.+|+.|+++++ +++.++. + ..
T Consensus 178 ~~~~~L~L~~~-~LtsLP~-----~I--p~~L~~L~Ls~N-~LtsLP~~l-----~~nL~~L~Ls~N-~LtsLP~~l~~~ 242 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPA-----CI--PEQITTLILDNN-ELKSLPENL-----QGNIKTLYANSN-QLTSIPATLPDT 242 (754)
T ss_pred cCceEEEeCCC-CcCcCCc-----cc--ccCCcEEEecCC-CCCcCChhh-----ccCCCEEECCCC-ccccCChhhhcc
Confidence 35677888776 5665421 11 357999999884 677776433 469999999986 5666653 2 23
Q ss_pred hhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceee
Q 044144 107 VVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEIT 186 (356)
Q Consensus 107 ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~ 186 (356)
+ +.| .++++. +..++. ....+|+.|++++ .+++.++... ...++.|.++
T Consensus 243 L-~~L-~Ls~N~-L~~LP~-----------~l~s~L~~L~Ls~-N~L~~LP~~l----------------~~sL~~L~Ls 291 (754)
T PRK15370 243 I-QEM-ELSINR-ITELPE-----------RLPSALQSLDLFH-NKISCLPENL----------------PEELRYLSVY 291 (754)
T ss_pred c-cEE-ECcCCc-cCcCCh-----------hHhCCCCEEECcC-CccCcccccc----------------CCCCcEEECC
Confidence 4 666 777764 444543 1125789999875 4565554321 1237777777
Q ss_pred cCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEec
Q 044144 187 LDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRF 266 (356)
Q Consensus 187 ~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 266 (356)
++.-..++..+ .++|+.|++.+|+++. +|.. ..++|+.|++.+| .++.+ |..+ .++|+.|++++
T Consensus 292 ~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt~------LP~~---l~~sL~~L~Ls~N-~Lt~L-P~~l---~~sL~~L~Ls~ 355 (754)
T PRK15370 292 DNSIRTLPAHL--PSGITHLNVQSNSLTA------LPET---LPPGLKTLEAGEN-ALTSL-PASL---PPELQVLDVSK 355 (754)
T ss_pred CCccccCcccc--hhhHHHHHhcCCcccc------CCcc---ccccceeccccCC-ccccC-Chhh---cCcccEEECCC
Confidence 66543343322 2478888888887765 3321 2368899999875 56666 5433 37899999999
Q ss_pred CcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCccccccc
Q 044144 267 CEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAAD 334 (356)
Q Consensus 267 c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~ 334 (356)
|. +..+ +... .++|++|++.+| +|+.+|... .++|+.|++.++ +++.+|..
T Consensus 356 N~-L~~L--P~~l--------p~~L~~LdLs~N-~Lt~LP~~l----~~sL~~LdLs~N-~L~~LP~s 406 (754)
T PRK15370 356 NQ-ITVL--PETL--------PPTITTLDVSRN-ALTNLPENL----PAALQIMQASRN-NLVRLPES 406 (754)
T ss_pred CC-CCcC--Chhh--------cCCcCEEECCCC-cCCCCCHhH----HHHHHHHhhccC-CcccCchh
Confidence 85 5443 1222 358999999887 677776543 236888888885 47777653
No 17
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.36 E-value=1e-07 Score=94.86 Aligned_cols=170 Identities=19% Similarity=0.226 Sum_probs=99.8
Q ss_pred ccccccccEEecCCCCCcceeecCCCCCCCC--------CCCCC---C-ccccccccccceeecCC-ccccccccccCCC
Q 044144 136 KIELAQLRYLSLGNLPEVTSFCREVKTPSAS--------PNRPA---S-QEESTTTYSSSEITLDT-STLLFNEKVALPN 202 (356)
Q Consensus 136 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~--------~~~~~---~-~~~~~~~l~~l~i~~~~-~~~l~~~~~~l~~ 202 (356)
...+..|++|++.. .++.+++...+..... .+... . .+..+..++.|++.+.. +...++.+..++.
T Consensus 306 le~~~sL~tLdL~~-N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~h 384 (1081)
T KOG0618|consen 306 LEGLKSLRTLDLQS-NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKH 384 (1081)
T ss_pred ccccceeeeeeehh-ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccc
Confidence 34478888998876 3455555422211110 00000 0 01133345555554433 3445556677777
Q ss_pred cCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcC
Q 044144 203 LEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEV 282 (356)
Q Consensus 203 L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 282 (356)
|+.|.++++.+.. +|+..+.+++.|+.|.+++ ++|+.+ | .....++.|++|....+. +..+ |+ ..
T Consensus 385 LKVLhLsyNrL~~------fpas~~~kle~LeeL~LSG-NkL~~L-p-~tva~~~~L~tL~ahsN~-l~~f--Pe-~~-- 449 (1081)
T KOG0618|consen 385 LKVLHLSYNRLNS------FPASKLRKLEELEELNLSG-NKLTTL-P-DTVANLGRLHTLRAHSNQ-LLSF--PE-LA-- 449 (1081)
T ss_pred eeeeeeccccccc------CCHHHHhchHHhHHHhccc-chhhhh-h-HHHHhhhhhHHHhhcCCc-eeec--hh-hh--
Confidence 8888888877776 6655566777777777776 677777 5 334456777777666543 3222 22 22
Q ss_pred cccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcC
Q 044144 283 IPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDK 327 (356)
Q Consensus 283 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~ 327 (356)
.++.|+.+++ .|.+|+.+..... ..+|+|++|++.+.+.
T Consensus 450 ----~l~qL~~lDl-S~N~L~~~~l~~~-~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 450 ----QLPQLKVLDL-SCNNLSEVTLPEA-LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred ----hcCcceEEec-ccchhhhhhhhhh-CCCcccceeeccCCcc
Confidence 2778888888 4668877654431 3457899999888874
No 18
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.30 E-value=4e-08 Score=79.49 Aligned_cols=157 Identities=18% Similarity=0.157 Sum_probs=92.4
Q ss_pred ccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCchhh
Q 044144 27 GFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFWLST 106 (356)
Q Consensus 27 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~l~~ 106 (356)
.+.++..|.++.+ +++.+ ++.+..+.+|+.|.+.+ ..++++|... .++++|+.|++. ..++..
T Consensus 31 ~~s~ITrLtLSHN-Kl~~v-----ppnia~l~nlevln~~n-nqie~lp~~i---ssl~klr~lnvg-mnrl~~------ 93 (264)
T KOG0617|consen 31 NMSNITRLTLSHN-KLTVV-----PPNIAELKNLEVLNLSN-NQIEELPTSI---SSLPKLRILNVG-MNRLNI------ 93 (264)
T ss_pred chhhhhhhhcccC-ceeec-----CCcHHHhhhhhhhhccc-chhhhcChhh---hhchhhhheecc-hhhhhc------
Confidence 4567778888877 56655 45566678888888888 6678887655 667888888765 111111
Q ss_pred hhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCc-ceeecCCCCCCCCCCCCCCcccccccccccee
Q 044144 107 VVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEV-TSFCREVKTPSASPNRPASQEESTTTYSSSEI 185 (356)
Q Consensus 107 ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i 185 (356)
+| .+++.||.|+.|++..-.-- .+++-..+ .++.+..+++
T Consensus 94 ----------------lp---------rgfgs~p~levldltynnl~e~~lpgnff--------------~m~tlralyl 134 (264)
T KOG0617|consen 94 ----------------LP---------RGFGSFPALEVLDLTYNNLNENSLPGNFF--------------YMTTLRALYL 134 (264)
T ss_pred ----------------Cc---------cccCCCchhhhhhccccccccccCCcchh--------------HHHHHHHHHh
Confidence 11 23566788888877653211 11111111 3445555666
Q ss_pred ecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCcccc
Q 044144 186 TLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYI 247 (356)
Q Consensus 186 ~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l 247 (356)
++.+...++..++.+++|+.|.++++++-+ +|. .++.+..|+.|+|.+ +.++.+
T Consensus 135 ~dndfe~lp~dvg~lt~lqil~lrdndll~------lpk-eig~lt~lrelhiqg-nrl~vl 188 (264)
T KOG0617|consen 135 GDNDFEILPPDVGKLTNLQILSLRDNDLLS------LPK-EIGDLTRLRELHIQG-NRLTVL 188 (264)
T ss_pred cCCCcccCChhhhhhcceeEEeeccCchhh------CcH-HHHHHHHHHHHhccc-ceeeec
Confidence 666555566666666667766666664443 332 234556666666655 455555
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.20 E-value=2e-07 Score=84.91 Aligned_cols=111 Identities=19% Similarity=0.204 Sum_probs=69.7
Q ss_pred ccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeec
Q 044144 196 EKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIIS 275 (356)
Q Consensus 196 ~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~ 275 (356)
.+..+++|..|+++++-+.+ +|. .+..+..|+.|+++. +.++.+ | .....+..++.+-.++. ++.++.
T Consensus 430 ~l~~l~kLt~L~L~NN~Ln~------LP~-e~~~lv~Lq~LnlS~-NrFr~l-P-~~~y~lq~lEtllas~n-qi~~vd- 497 (565)
T KOG0472|consen 430 ELSQLQKLTFLDLSNNLLND------LPE-EMGSLVRLQTLNLSF-NRFRML-P-ECLYELQTLETLLASNN-QIGSVD- 497 (565)
T ss_pred HHHhhhcceeeecccchhhh------cch-hhhhhhhhheecccc-cccccc-h-HHHhhHHHHHHHHhccc-cccccC-
Confidence 45566777777777764444 332 133455577777765 355555 4 33333344444444443 354542
Q ss_pred cCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcC
Q 044144 276 ENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDK 327 (356)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~ 327 (356)
+++... +.+|.+|++.+. .+..+|... ..+++|++|++.+.|-
T Consensus 498 ~~~l~n------m~nL~tLDL~nN-dlq~IPp~L--gnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 498 PSGLKN------MRNLTTLDLQNN-DLQQIPPIL--GNMTNLRHLELDGNPF 540 (565)
T ss_pred hHHhhh------hhhcceeccCCC-chhhCChhh--ccccceeEEEecCCcc
Confidence 333333 788999999665 899999887 8899999999999873
No 20
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.19 E-value=2.6e-06 Score=58.02 Aligned_cols=60 Identities=30% Similarity=0.478 Sum_probs=44.0
Q ss_pred CCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCc
Q 044144 201 PNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 201 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 268 (356)
|+|++|++.+|+++. +|...|..+++|+.|++++ ++++.+ +...+..+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~------i~~~~f~~l~~L~~L~l~~-N~l~~i-~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE------IPPDSFSNLPNLETLDLSN-NNLTSI-PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESE------ECTTTTTTGTTESEEEETS-SSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCc------cCHHHHcCCCCCCEeEccC-CccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence 577888888887777 3434577778888888874 577777 66777788888888887764
No 21
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.13 E-value=1.1e-05 Score=75.38 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=5.3
Q ss_pred CccEEeeccCc
Q 044144 232 NLTRLIVWHCN 242 (356)
Q Consensus 232 ~L~~L~i~~c~ 242 (356)
+|+.|.|.+|.
T Consensus 157 SLk~L~Is~c~ 167 (426)
T PRK15386 157 SLKTLSLTGCS 167 (426)
T ss_pred cccEEEecCCC
Confidence 44555554444
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=6.7e-07 Score=82.26 Aligned_cols=89 Identities=16% Similarity=0.207 Sum_probs=47.0
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccc
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKV 81 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 81 (356)
+++|+...|.+++ +...........|++++.|+++.+ -+..+ .. ...-+.++|+|+.|.++.- .+...+ +....
T Consensus 120 ~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw-~~-v~~i~eqLp~Le~LNls~N-rl~~~~-~s~~~ 193 (505)
T KOG3207|consen 120 LKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRN-LFHNW-FP-VLKIAEQLPSLENLNLSSN-RLSNFI-SSNTT 193 (505)
T ss_pred HHhhhheeecCcc-ccccchhhhhhhCCcceeecchhh-hHHhH-HH-HHHHHHhcccchhcccccc-cccCCc-cccch
Confidence 4566666776653 222111123446778888888766 22221 00 0113556788888887773 333222 22222
Q ss_pred cCCCCccEEEEccCC
Q 044144 82 ESFNELKIIQAYNCD 96 (356)
Q Consensus 82 ~~l~~L~~L~l~~c~ 96 (356)
..++.|+.|.++.|+
T Consensus 194 ~~l~~lK~L~l~~CG 208 (505)
T KOG3207|consen 194 LLLSHLKQLVLNSCG 208 (505)
T ss_pred hhhhhhheEEeccCC
Confidence 456777777777774
No 23
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=98.06 E-value=2.8e-07 Score=89.65 Aligned_cols=92 Identities=22% Similarity=0.245 Sum_probs=52.8
Q ss_pred CccEEeeccCcCccccchhhhhhhcCCCC-eEEEecCccc-ceeeccCCCCcCcccccCCccCeeeccccccceeecCCC
Q 044144 232 NLTRLIVWHCNKLKYIFSASMIGSLKHLQ-HLEVRFCEDL-QEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGM 309 (356)
Q Consensus 232 ~L~~L~i~~c~~l~~l~~~~~~~~l~~L~-~L~i~~c~~l-~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~ 309 (356)
.+..+.+.+|++++++ ...... ..... .+.+.+|+.+ +.+. .... .+.+++.|.+..|...+......
T Consensus 352 ~~~~~~~~~~~~l~~~-~l~~~~-~~~~~~~~~l~gc~~l~~~l~--~~~~------~~~~l~~L~l~~~~~~t~~~l~~ 421 (482)
T KOG1947|consen 352 DLAELILRSCPKLTDL-SLSYCG-ISDLGLELSLRGCPNLTESLE--LRLC------RSDSLRVLNLSDCRLVTDKGLRC 421 (482)
T ss_pred hHhHHHHhcCCCcchh-hhhhhh-ccCcchHHHhcCCcccchHHH--HHhc------cCCccceEecccCccccccchHH
Confidence 4555555666666665 222222 22222 4666777766 2221 1111 13348899999998877765554
Q ss_pred CcCCCCcccEEeeccCcCcccccc
Q 044144 310 HTSEWPALEIFSVFRCDKLKIFAA 333 (356)
Q Consensus 310 ~~~~~~~L~~L~i~~C~~l~~l~~ 333 (356)
....+..++.+++.+|+.+..-..
T Consensus 422 ~~~~~~~~~~l~~~~~~~~~~~~~ 445 (482)
T KOG1947|consen 422 LADSCSNLKDLDLSGCRVITLKSL 445 (482)
T ss_pred HhhhhhccccCCccCcccccchhh
Confidence 322366788888888888776554
No 24
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.06 E-value=1.5e-06 Score=89.49 Aligned_cols=105 Identities=20% Similarity=0.239 Sum_probs=69.2
Q ss_pred ccCCCcEEEEecCCC-ceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCc-h
Q 044144 27 GFSQLKLLWVQNNPD-FFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFW-L 104 (356)
Q Consensus 27 ~l~~L~~L~l~~c~~-l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-l 104 (356)
..+.|++|-+.+... +..+ .......++.|+.|+++++..+.++|... +.+-+||.|++++. .++.+|. +
T Consensus 543 ~~~~L~tLll~~n~~~l~~i----s~~ff~~m~~LrVLDLs~~~~l~~LP~~I---~~Li~LryL~L~~t-~I~~LP~~l 614 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEI----SGEFFRSLPLLRVLDLSGNSSLSKLPSSI---GELVHLRYLDLSDT-GISHLPSGL 614 (889)
T ss_pred CCCccceEEEeecchhhhhc----CHHHHhhCcceEEEECCCCCccCcCChHH---hhhhhhhcccccCC-CccccchHH
Confidence 566899999988753 3332 12235678999999999999999998777 77999999999886 4555553 3
Q ss_pred hhhhcccc--ccccccchhhhhcccccccCcccccccccccEEecCC
Q 044144 105 STVVNHSS--TVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGN 149 (356)
Q Consensus 105 ~~ll~~L~--~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 149 (356)
..+ +.|. ++.....+..++. ....+.+|+.|.+..
T Consensus 615 ~~L-k~L~~Lnl~~~~~l~~~~~---------i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 615 GNL-KKLIYLNLEVTGRLESIPG---------ILLELQSLRVLRLPR 651 (889)
T ss_pred HHH-Hhhheeccccccccccccc---------hhhhcccccEEEeec
Confidence 333 3332 4444444444432 122367788877754
No 25
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.05 E-value=5.4e-07 Score=82.82 Aligned_cols=12 Identities=33% Similarity=0.346 Sum_probs=9.2
Q ss_pred ccccEEecCCCC
Q 044144 140 AQLRYLSLGNLP 151 (356)
Q Consensus 140 ~~L~~L~l~~~~ 151 (356)
++|+.|+++++.
T Consensus 137 ~~L~~L~L~~n~ 148 (319)
T cd00116 137 PALEKLVLGRNR 148 (319)
T ss_pred CCceEEEcCCCc
Confidence 678888888764
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=6e-07 Score=82.57 Aligned_cols=93 Identities=20% Similarity=0.192 Sum_probs=50.7
Q ss_pred cccCCCcCeEEecce-eeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeec
Q 044144 197 KVALPNLEALEISAI-NVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIIS 275 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~-~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~ 275 (356)
+..||+|+.|.+.++ .+.. .. .+ ...++.|+.|++++-+ +.+.--....+.+|.|+.|++..|. +.++-.
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~---~~-~~---~~i~~~L~~LdLs~N~-li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~ 288 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILI---KA-TS---TKILQTLQELDLSNNN-LIDFDQGYKVGTLPGLNQLNLSSTG-IASIAE 288 (505)
T ss_pred HHhCCcHHHhhhhcccccce---ec-ch---hhhhhHHhhccccCCc-ccccccccccccccchhhhhccccC-cchhcC
Confidence 445778888888777 3222 01 11 2245677778887643 3333122344567777777777765 555543
Q ss_pred cCCCCcCcccccCCccCeeecccc
Q 044144 276 ENRADEVIPYFVFPQLTTLILQYL 299 (356)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~L~l~~c 299 (356)
++... ...-..|++|+.|.+...
T Consensus 289 ~d~~s-~~kt~~f~kL~~L~i~~N 311 (505)
T KOG3207|consen 289 PDVES-LDKTHTFPKLEYLNISEN 311 (505)
T ss_pred CCccc-hhhhcccccceeeecccC
Confidence 33311 111223777777777554
No 27
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.04 E-value=1.4e-07 Score=76.33 Aligned_cols=34 Identities=18% Similarity=0.172 Sum_probs=15.0
Q ss_pred CCccCeeeccccccceeecCCCCcCCCCcccEEeecc
Q 044144 288 FPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFR 324 (356)
Q Consensus 288 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~ 324 (356)
+++|+.|.+++. +|-++|... ..++.|++|.|.+
T Consensus 149 lt~lqil~lrdn-dll~lpkei--g~lt~lrelhiqg 182 (264)
T KOG0617|consen 149 LTNLQILSLRDN-DLLSLPKEI--GDLTRLRELHIQG 182 (264)
T ss_pred hcceeEEeeccC-chhhCcHHH--HHHHHHHHHhccc
Confidence 444555554443 333343333 3344444444444
No 28
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=3.1e-07 Score=80.63 Aligned_cols=119 Identities=18% Similarity=0.107 Sum_probs=74.5
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccc-hhhhhhhcCCCCeEEEecCcccceeec
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIF-SASMIGSLKHLQHLEVRFCEDLQEIIS 275 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~-~~~~~~~l~~L~~L~i~~c~~l~~i~~ 275 (356)
+..+..|..|+|+.|.+...- ...++-.--++|++|++++|.+--... .......+|+|.+|+++||..++.-.
T Consensus 256 ~~scs~L~~LNlsWc~l~~~~----Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~- 330 (419)
T KOG2120|consen 256 LSSCSRLDELNLSWCFLFTEK----VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDC- 330 (419)
T ss_pred HHhhhhHhhcCchHhhccchh----hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchH-
Confidence 456788999999988433200 111111123788999999887522211 23556688999999999998664321
Q ss_pred cCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcC
Q 044144 276 ENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDK 327 (356)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~ 327 (356)
.... ..|+.|++|.++.|..+---- ..+....|+|.+|++++|-.
T Consensus 331 ~~~~------~kf~~L~~lSlsRCY~i~p~~-~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 331 FQEF------FKFNYLQHLSLSRCYDIIPET-LLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHHH------HhcchheeeehhhhcCCChHH-eeeeccCcceEEEEeccccC
Confidence 1222 237899999999986652211 11225678999999998864
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.01 E-value=4.8e-07 Score=83.18 Aligned_cols=252 Identities=15% Similarity=0.033 Sum_probs=119.8
Q ss_pred cccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccc----cccccCCCCccEEEEccCCCcccc
Q 044144 26 EGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWID----QLKVESFNELKIIQAYNCDKLSNI 101 (356)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~----~~~~~~l~~L~~L~l~~c~~l~~~ 101 (356)
..+.+|+.|++.+| .++.-............++++++++.++. +...+.+ ......+++|++|++++|+.-..
T Consensus 20 ~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~- 96 (319)
T cd00116 20 PKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD- 96 (319)
T ss_pred HHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCCChh-
Confidence 45667888888887 34211000001134455678888777643 2210000 00112356777777776533210
Q ss_pred CchhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccc-ccc
Q 044144 102 FWLSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEEST-TTY 180 (356)
Q Consensus 102 ~~l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~l 180 (356)
....+..+. .. ++|++|+++++.- ........... .... ..+
T Consensus 97 --------------~~~~~~~l~------------~~-~~L~~L~ls~~~~-~~~~~~~l~~~---------l~~~~~~L 139 (319)
T cd00116 97 --------------GCGVLESLL------------RS-SSLQELKLNNNGL-GDRGLRLLAKG---------LKDLPPAL 139 (319)
T ss_pred --------------HHHHHHHHh------------cc-CcccEEEeeCCcc-chHHHHHHHHH---------HHhCCCCc
Confidence 000111111 12 4599999988642 21000000000 0011 346
Q ss_pred ccceeecCCcc-----ccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccch---hhh
Q 044144 181 SSSEITLDTST-----LLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFS---ASM 252 (356)
Q Consensus 181 ~~l~i~~~~~~-----~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~---~~~ 252 (356)
+.+.+++|.-. .+...+..+++|+.|++.+|.++...... ++. .+..+++|+.|++++| .+.+... ...
T Consensus 140 ~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-l~~-~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~ 216 (319)
T cd00116 140 EKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRA-LAE-GLKANCNLEVLDLNNN-GLTDEGASALAET 216 (319)
T ss_pred eEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHH-HHH-HHHhCCCCCEEeccCC-ccChHHHHHHHHH
Confidence 77777766522 23334455667888888887665311000 111 1223468888888776 3332211 123
Q ss_pred hhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeecccccccee-----ecCCCCcCCCCcccEEeeccCc
Q 044144 253 IGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRC-----LYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 253 ~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~-----~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
+..+++|++|++++|. +.......-... .....+.|++|++.+| .+++ +.... ..+++|+.+++.++.
T Consensus 217 ~~~~~~L~~L~ls~n~-l~~~~~~~l~~~--~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~--~~~~~L~~l~l~~N~ 289 (319)
T cd00116 217 LASLKSLEVLNLGDNN-LTDAGAAALASA--LLSPNISLLTLSLSCN-DITDDGAKDLAEVL--AEKESLLELDLRGNK 289 (319)
T ss_pred hcccCCCCEEecCCCc-CchHHHHHHHHH--HhccCCCceEEEccCC-CCCcHHHHHHHHHH--hcCCCccEEECCCCC
Confidence 4456778888888875 332100000000 0001367888888777 4432 11111 344678888877754
No 30
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.00 E-value=2.3e-05 Score=73.31 Aligned_cols=80 Identities=15% Similarity=0.153 Sum_probs=43.4
Q ss_pred cCccEEeeccCcCccccchhhhhhhc-CCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCC
Q 044144 231 QNLTRLIVWHCNKLKYIFSASMIGSL-KHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGM 309 (356)
Q Consensus 231 ~~L~~L~i~~c~~l~~l~~~~~~~~l-~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~ 309 (356)
++|+.|.+.+....... ..-..+ ++|++|.+.+|..+. .++.... +|+.|++..+. .+.+....
T Consensus 132 ssLk~L~I~~~n~~~~~---~lp~~LPsSLk~L~Is~c~~i~---LP~~LP~--------SLk~L~ls~n~-~~sLeI~~ 196 (426)
T PRK15386 132 NGLTSLSINSYNPENQA---RIDNLISPSLKTLSLTGCSNII---LPEKLPE--------SLQSITLHIEQ-KTTWNISF 196 (426)
T ss_pred chHhheecccccccccc---ccccccCCcccEEEecCCCccc---Ccccccc--------cCcEEEecccc-cccccCcc
Confidence 45778877543211111 000112 689999999998552 2333433 89999987642 22211111
Q ss_pred CcCCC-CcccEEeeccCcCc
Q 044144 310 HTSEW-PALEIFSVFRCDKL 328 (356)
Q Consensus 310 ~~~~~-~~L~~L~i~~C~~l 328 (356)
..+ +++ .|.+.+|-++
T Consensus 197 --~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 197 --EGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred --ccccccc-Eechhhhccc
Confidence 223 345 8888888554
No 31
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.98 E-value=2e-06 Score=85.98 Aligned_cols=110 Identities=21% Similarity=0.213 Sum_probs=72.8
Q ss_pred CCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCC
Q 044144 200 LPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRA 279 (356)
Q Consensus 200 l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 279 (356)
-++|+.|....|-++...... .-.+|++++|++ +++..+ | .|...+.+|+.+++.... +..+ +..
T Consensus 218 g~~l~~L~a~~n~l~~~~~~p--------~p~nl~~~dis~-n~l~~l-p-~wi~~~~nle~l~~n~N~-l~~l--p~r- 282 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLTTLDVHP--------VPLNLQYLDISH-NNLSNL-P-EWIGACANLEALNANHNR-LVAL--PLR- 282 (1081)
T ss_pred CcchheeeeccCcceeecccc--------ccccceeeecch-hhhhcc-h-HHHHhcccceEecccchh-HHhh--HHH-
Confidence 356666666666444322111 225788888877 677777 7 888889999998888765 4333 122
Q ss_pred CcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCcccccc
Q 044144 280 DEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAA 333 (356)
Q Consensus 280 ~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~ 333 (356)
+...++|+.|.+.+| +++.++... ..+++|+.|++.. .++.++|.
T Consensus 283 -----i~~~~~L~~l~~~~n-el~yip~~l--e~~~sL~tLdL~~-N~L~~lp~ 327 (1081)
T KOG0618|consen 283 -----ISRITSLVSLSAAYN-ELEYIPPFL--EGLKSLRTLDLQS-NNLPSLPD 327 (1081)
T ss_pred -----HhhhhhHHHHHhhhh-hhhhCCCcc--cccceeeeeeehh-ccccccch
Confidence 223567777777766 777777765 4577888887776 45777775
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.90 E-value=1.5e-05 Score=66.34 Aligned_cols=109 Identities=22% Similarity=0.296 Sum_probs=44.8
Q ss_pred cCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCC
Q 044144 199 ALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENR 278 (356)
Q Consensus 199 ~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 278 (356)
.+.+|+.|++++|.++.+ +. +..+++|+.|++++ +.++++ .......+|+|++|+++++. +.++. .
T Consensus 40 ~l~~L~~L~Ls~N~I~~l------~~--l~~L~~L~~L~L~~-N~I~~i-~~~l~~~lp~L~~L~L~~N~-I~~l~---~ 105 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKL------EG--LPGLPRLKTLDLSN-NRISSI-SEGLDKNLPNLQELYLSNNK-ISDLN---E 105 (175)
T ss_dssp T-TT--EEE-TTS--S--------TT------TT--EEE--S-S---S--CHHHHHH-TT--EEE-TTS----SCC---C
T ss_pred hhcCCCEEECCCCCCccc------cC--ccChhhhhhcccCC-CCCCcc-ccchHHhCCcCCEEECcCCc-CCChH---H
Confidence 467999999999988873 22 55789999999976 788887 43444578999999998865 54442 1
Q ss_pred CCcCcccccCCccCeeeccccccceeecC--CCCcCCCCcccEEeeccC
Q 044144 279 ADEVIPYFVFPQLTTLILQYLPKLRCLYP--GMHTSEWPALEIFSVFRC 325 (356)
Q Consensus 279 ~~~~~~~~~l~~L~~L~l~~c~~L~~~~~--~~~~~~~~~L~~L~i~~C 325 (356)
. .....+++|+.|++.++|--.. .. ..+...+|+|+.|+-...
T Consensus 106 l---~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 106 L---EPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp C---GGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEET
T ss_pred h---HHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEc
Confidence 1 1233488999999988874321 11 011134556666554433
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.86 E-value=2.9e-05 Score=52.77 Aligned_cols=59 Identities=25% Similarity=0.275 Sum_probs=39.1
Q ss_pred cCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeecccc
Q 044144 231 QNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYL 299 (356)
Q Consensus 231 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c 299 (356)
|+|++|+++++ +++.+ +.+.+..+++|++|+++++. ++.+. ++.... +++|++|++.++
T Consensus 1 p~L~~L~l~~n-~l~~i-~~~~f~~l~~L~~L~l~~N~-l~~i~-~~~f~~------l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEI-PPDSFSNLPNLETLDLSNNN-LTSIP-PDAFSN------LPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEE-CTTTTTTGTTESEEEETSSS-ESEEE-TTTTTT------STTESEEEETSS
T ss_pred CcCcEEECCCC-CCCcc-CHHHHcCCCCCCEeEccCCc-cCccC-HHHHcC------CCCCCEEeCcCC
Confidence 46777777775 77777 66777777777777777654 65552 333444 677777777665
No 34
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=3.4e-07 Score=80.42 Aligned_cols=40 Identities=30% Similarity=0.260 Sum_probs=22.5
Q ss_pred CCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcc
Q 044144 229 RFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCED 269 (356)
Q Consensus 229 ~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~ 269 (356)
.+|+|..|++++|..+++- -...+-.++.|++|.+++|..
T Consensus 311 rcp~l~~LDLSD~v~l~~~-~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 311 RCPNLVHLDLSDSVMLKND-CFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred hCCceeeeccccccccCch-HHHHHHhcchheeeehhhhcC
Confidence 4566666666666655553 233444556666666666653
No 35
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.68 E-value=2.9e-05 Score=64.58 Aligned_cols=107 Identities=20% Similarity=0.211 Sum_probs=36.8
Q ss_pred cCCCcCeEEecceeeeEEcccCCCCCCCCC-CCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccC
Q 044144 199 ALPNLEALEISAINVDKIWHYNQIPAAVFP-RFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISEN 277 (356)
Q Consensus 199 ~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~-~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~ 277 (356)
+..++++|++.+++++.+. . ++ .+.+|+.|++++ +.++.+ ..+..++.|++|+++++. +..+. +
T Consensus 17 n~~~~~~L~L~~n~I~~Ie------~--L~~~l~~L~~L~Ls~-N~I~~l---~~l~~L~~L~~L~L~~N~-I~~i~--~ 81 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE------N--LGATLDKLEVLDLSN-NQITKL---EGLPGLPRLKTLDLSNNR-ISSIS--E 81 (175)
T ss_dssp -------------------------S----TT-TT--EEE-TT-S--S-----TT----TT--EEE--SS----S-C--H
T ss_pred ccccccccccccccccccc------c--hhhhhcCCCEEECCC-CCCccc---cCccChhhhhhcccCCCC-CCccc--c
Confidence 3457899999999888741 1 22 578999999987 577777 356678999999999976 65552 1
Q ss_pred CCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 278 RADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
+.. ..+|+|++|++++. ++.++..-.....+|+|+.|++.++|
T Consensus 82 ~l~-----~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP 124 (175)
T PF14580_consen 82 GLD-----KNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP 124 (175)
T ss_dssp HHH-----HH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G
T ss_pred chH-----HhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc
Confidence 111 12889999999765 67666554444578999999888877
No 36
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.64 E-value=9.7e-06 Score=73.95 Aligned_cols=136 Identities=23% Similarity=0.264 Sum_probs=80.7
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeecc
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISE 276 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~ 276 (356)
+..+|+|++|++++++++.+-.. .|.....++.|.+.+ +++..+ ...++..+..|+.|++.+.. ++-+. +
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~------aFe~~a~l~eL~L~~-N~l~~v-~~~~f~~ls~L~tL~L~~N~-it~~~-~ 339 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDG------AFEGAAELQELYLTR-NKLEFV-SSGMFQGLSGLKTLSLYDNQ-ITTVA-P 339 (498)
T ss_pred HhhcccceEeccCCCccchhhhh------hhcchhhhhhhhcCc-chHHHH-HHHhhhccccceeeeecCCe-eEEEe-c
Confidence 45577888888888877774333 255667788887755 677777 66788888888888888865 54442 2
Q ss_pred CCCCcCcccccCCccCeeecccccc--------ceeec-----CCCCcCCCC---cccEEeeccCcCcccccccccCCCC
Q 044144 277 NRADEVIPYFVFPQLTTLILQYLPK--------LRCLY-----PGMHTSEWP---ALEIFSVFRCDKLKIFAADLSQNNE 340 (356)
Q Consensus 277 ~~~~~~~~~~~l~~L~~L~l~~c~~--------L~~~~-----~~~~~~~~~---~L~~L~i~~C~~l~~l~~~~~~~~~ 340 (356)
..... +.+|.+|.+...|- |.++- .+. ..|. .++.+.|++-. +..+..++ ..+
T Consensus 340 ~aF~~------~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~--~~Cq~p~~~~~~~~~dv~-~~~~~c~~--~ee 408 (498)
T KOG4237|consen 340 GAFQT------LFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGN--PRCQSPGFVRQIPISDVA-FGDFRCGG--PEE 408 (498)
T ss_pred ccccc------cceeeeeehccCcccCccchHHHHHHHhhCCCCCC--CCCCCCchhccccchhcc-ccccccCC--ccc
Confidence 22222 55777777754432 11111 111 2232 36677777744 45555552 245
Q ss_pred CCCCCCCCCCCCC
Q 044144 341 NDQLGIPAQQPPC 353 (356)
Q Consensus 341 ~~~~~~~~~~~~~ 353 (356)
..+..-+..+|.|
T Consensus 409 ~~~~~s~~cP~~c 421 (498)
T KOG4237|consen 409 LGCLTSSPCPPPC 421 (498)
T ss_pred cCCCCCCCCCCCc
Confidence 5555555555544
No 37
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.56 E-value=3.2e-06 Score=82.14 Aligned_cols=39 Identities=23% Similarity=0.332 Sum_probs=24.3
Q ss_pred cCcccceeeccccccccccccccccccCCCCccEEEEccC
Q 044144 56 AFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNC 95 (356)
Q Consensus 56 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c 95 (356)
.+++|+.|.+.+|..+.+...... ....++|++|++++|
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~ 224 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDAL-ALKCPNLEELDLSGC 224 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHH-HhhCchhheecccCc
Confidence 367777777777777665321111 134677888887773
No 38
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.45 E-value=1.9e-05 Score=72.09 Aligned_cols=57 Identities=19% Similarity=0.107 Sum_probs=37.6
Q ss_pred CceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccc
Q 044144 15 GIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWID 77 (356)
Q Consensus 15 ~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 77 (356)
+++.+ ++..++.+++||+|+|+++ +|..| .+.+...+++|-+|.+.+-.++++++.+
T Consensus 78 ~I~~i-P~~aF~~l~~LRrLdLS~N-~Is~I----~p~AF~GL~~l~~Lvlyg~NkI~~l~k~ 134 (498)
T KOG4237|consen 78 QISSI-PPGAFKTLHRLRRLDLSKN-NISFI----APDAFKGLASLLSLVLYGNNKITDLPKG 134 (498)
T ss_pred CcccC-Chhhccchhhhceeccccc-chhhc----ChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence 44443 5556778888999999887 77776 2334556666666766665666666543
No 39
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.97 E-value=0.00018 Score=63.71 Aligned_cols=86 Identities=24% Similarity=0.336 Sum_probs=42.9
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeecc
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISE 276 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~ 276 (356)
+..+++|+.|+++++.++.+.... ..+-+.++|.+.+ +.++++ +.++.+.+|..|++.++. ++..--.
T Consensus 325 La~L~~L~~LDLS~N~Ls~~~Gwh-------~KLGNIKtL~La~-N~iE~L---SGL~KLYSLvnLDl~~N~-Ie~ldeV 392 (490)
T KOG1259|consen 325 LAELPQLQLLDLSGNLLAECVGWH-------LKLGNIKTLKLAQ-NKIETL---SGLRKLYSLVNLDLSSNQ-IEELDEV 392 (490)
T ss_pred hhhcccceEeecccchhHhhhhhH-------hhhcCEeeeehhh-hhHhhh---hhhHhhhhheeccccccc-hhhHHHh
Confidence 444566666666666444321000 1345556666654 445555 345566666666666643 4333111
Q ss_pred CCCCcCcccccCCccCeeeccccc
Q 044144 277 NRADEVIPYFVFPQLTTLILQYLP 300 (356)
Q Consensus 277 ~~~~~~~~~~~l~~L~~L~l~~c~ 300 (356)
.+++. +|.|+++.+.+.|
T Consensus 393 ~~IG~------LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 393 NHIGN------LPCLETLRLTGNP 410 (490)
T ss_pred ccccc------ccHHHHHhhcCCC
Confidence 22232 6666666666554
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.96 E-value=0.00024 Score=62.95 Aligned_cols=124 Identities=15% Similarity=0.128 Sum_probs=81.8
Q ss_pred cceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCe
Q 044144 182 SSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQH 261 (356)
Q Consensus 182 ~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 261 (356)
.++++...-..+-+++.-.|.++.|+++.+.+..+- + ++.+++|+.|++++ +.+..+ .+|-..+-+.++
T Consensus 288 elDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~------n--La~L~~L~~LDLS~-N~Ls~~--~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 288 ELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ------N--LAELPQLQLLDLSG-NLLAEC--VGWHLKLGNIKT 356 (490)
T ss_pred hccccccchhhhhhhhhhccceeEEeccccceeeeh------h--hhhcccceEeeccc-chhHhh--hhhHhhhcCEee
Confidence 333333333334445566799999999998777631 1 55788999999987 566665 266667788899
Q ss_pred EEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcC
Q 044144 262 LEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDK 327 (356)
Q Consensus 262 L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~ 327 (356)
|.+.++. ++.+ .+... +-+|..|++++. ++..+-.-..-..+|+|+.+.+.+.|-
T Consensus 357 L~La~N~-iE~L---SGL~K------LYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 357 LKLAQNK-IETL---SGLRK------LYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred eehhhhh-Hhhh---hhhHh------hhhheecccccc-chhhHHHhcccccccHHHHHhhcCCCc
Confidence 9998865 6555 33332 457888888765 444433222226789999999988773
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.83 E-value=0.00029 Score=71.15 Aligned_cols=105 Identities=16% Similarity=0.171 Sum_probs=59.8
Q ss_pred ccCCCcEEEEecCCCceEeecCCccccc-ccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCchh
Q 044144 27 GFSQLKLLWVQNNPDFFCIVDSRAMVAC-DAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFWLS 105 (356)
Q Consensus 27 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~l~ 105 (356)
.-.+|+.|++++-..+ ..+++..+ ..||+|++|.+.+-.-..+. .. .-..+||||+.|+|+++ ++.++.-.+
T Consensus 120 sr~nL~~LdI~G~~~~----s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~-~lc~sFpNL~sLDIS~T-nI~nl~GIS 192 (699)
T KOG3665|consen 120 SRQNLQHLDISGSELF----SNGWPKKIGTMLPSLRSLVISGRQFDNDD-FS-QLCASFPNLRSLDISGT-NISNLSGIS 192 (699)
T ss_pred HHHhhhhcCccccchh----hccHHHHHhhhCcccceEEecCceecchh-HH-HHhhccCccceeecCCC-CccCcHHHh
Confidence 4578899999774322 22222233 36899999998884322221 11 12256899999999986 444443333
Q ss_pred hhhcccc-------ccccccchhhhhcccccccCcccccccccccEEecCCCCC
Q 044144 106 TVVNHSS-------TVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPE 152 (356)
Q Consensus 106 ~ll~~L~-------~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 152 (356)
.+ ++|+ .+.....+.+ ...+.+|+.|+++.-..
T Consensus 193 ~L-knLq~L~mrnLe~e~~~~l~~-------------LF~L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 193 RL-KNLQVLSMRNLEFESYQDLID-------------LFNLKKLRVLDISRDKN 232 (699)
T ss_pred cc-ccHHHHhccCCCCCchhhHHH-------------HhcccCCCeeecccccc
Confidence 33 3332 2222233333 44678888888876443
No 42
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.69 E-value=0.00036 Score=70.52 Aligned_cols=131 Identities=21% Similarity=0.169 Sum_probs=82.2
Q ss_pred cccccceeecCCcc--cccccc-ccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhh
Q 044144 178 TTYSSSEITLDTST--LLFNEK-VALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIG 254 (356)
Q Consensus 178 ~~l~~l~i~~~~~~--~l~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~ 254 (356)
..+++|+|++.... .++..+ .-||+|+.|.+.+-.+..-+... ...+||+|..|||+++ ++.++ .+.+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~-----lc~sFpNL~sLDIS~T-nI~nl---~GIS 192 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQ-----LCASFPNLRSLDISGT-NISNL---SGIS 192 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHH-----HhhccCccceeecCCC-CccCc---HHHh
Confidence 45888888775532 122223 34799999999997443322111 2458899999999985 67777 5678
Q ss_pred hcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceee--cCC--CCcCCCCcccEEeecc
Q 044144 255 SLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCL--YPG--MHTSEWPALEIFSVFR 324 (356)
Q Consensus 255 ~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~--~~~--~~~~~~~~L~~L~i~~ 324 (356)
++++|+.|.+.+-. ++. .........+++|++|+++.=.+.... ... .....+|.|+.|+.++
T Consensus 193 ~LknLq~L~mrnLe-~e~------~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 193 RLKNLQVLSMRNLE-FES------YQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred ccccHHHHhccCCC-CCc------hhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 88999998888754 221 111112334889999999865443332 100 0013578888887774
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.0033 Score=55.87 Aligned_cols=38 Identities=11% Similarity=-0.047 Sum_probs=21.3
Q ss_pred cCcccceeeccccccccccccccccccCCCCccEEEEcc
Q 044144 56 AFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYN 94 (356)
Q Consensus 56 ~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~ 94 (356)
....++++++.+ ..+.+|.........+|.|+.|+++.
T Consensus 69 ~~~~v~elDL~~-N~iSdWseI~~ile~lP~l~~LNls~ 106 (418)
T KOG2982|consen 69 SVTDVKELDLTG-NLISDWSEIGAILEQLPALTTLNLSC 106 (418)
T ss_pred Hhhhhhhhhccc-chhccHHHHHHHHhcCccceEeeccC
Confidence 445667777666 44555532222234577777777754
No 44
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=95.87 E-value=0.0015 Score=62.70 Aligned_cols=107 Identities=21% Similarity=0.276 Sum_probs=50.6
Q ss_pred cCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcC
Q 044144 203 LEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEV 282 (356)
Q Consensus 203 L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 282 (356)
|+.|.+.+++++. +|. .++..+.|..|+++. +++..+ | ..++++.+|+.|.+...+ +..+.. +-..
T Consensus 145 Lkvli~sNNkl~~------lp~-~ig~~~tl~~ld~s~-nei~sl-p-sql~~l~slr~l~vrRn~-l~~lp~-El~~-- 210 (722)
T KOG0532|consen 145 LKVLIVSNNKLTS------LPE-EIGLLPTLAHLDVSK-NEIQSL-P-SQLGYLTSLRDLNVRRNH-LEDLPE-ELCS-- 210 (722)
T ss_pred ceeEEEecCcccc------CCc-ccccchhHHHhhhhh-hhhhhc-h-HHhhhHHHHHHHHHhhhh-hhhCCH-HHhC--
Confidence 5555555555555 222 122445555665543 344454 3 233445566666555544 333311 1111
Q ss_pred cccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCcccccc
Q 044144 283 IPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAA 333 (356)
Q Consensus 283 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~ 333 (356)
+ .|..|++ .|.++..+|... ..++.|+.|.+.+.| |++-|.
T Consensus 211 -----L-pLi~lDf-ScNkis~iPv~f--r~m~~Lq~l~LenNP-LqSPPA 251 (722)
T KOG0532|consen 211 -----L-PLIRLDF-SCNKISYLPVDF--RKMRHLQVLQLENNP-LQSPPA 251 (722)
T ss_pred -----C-ceeeeec-ccCceeecchhh--hhhhhheeeeeccCC-CCCChH
Confidence 1 3444555 344666655554 455556666555444 555443
No 45
>PLN03150 hypothetical protein; Provisional
Probab=95.80 E-value=0.015 Score=58.77 Aligned_cols=110 Identities=13% Similarity=0.176 Sum_probs=55.1
Q ss_pred cCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcC
Q 044144 203 LEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEV 282 (356)
Q Consensus 203 L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 282 (356)
++.|.+.++.++.. +|. .+..+++|+.|+++++ ++....| ..++.+++|+.|+++++. +...+ ++....
T Consensus 420 v~~L~L~~n~L~g~-----ip~-~i~~L~~L~~L~Ls~N-~l~g~iP-~~~~~l~~L~~LdLs~N~-lsg~i-P~~l~~- 488 (623)
T PLN03150 420 IDGLGLDNQGLRGF-----IPN-DISKLRHLQSINLSGN-SIRGNIP-PSLGSITSLEVLDLSYNS-FNGSI-PESLGQ- 488 (623)
T ss_pred EEEEECCCCCcccc-----CCH-HHhCCCCCCEEECCCC-cccCcCC-hHHhCCCCCCEEECCCCC-CCCCC-chHHhc-
Confidence 55666666655431 222 2446677777777664 3433324 334566777777777664 33221 222333
Q ss_pred cccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCcc
Q 044144 283 IPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLK 329 (356)
Q Consensus 283 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~ 329 (356)
+++|+.|++.++.--..+|... .....++..+++.+++.+.
T Consensus 489 -----L~~L~~L~Ls~N~l~g~iP~~l-~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 489 -----LTSLRILNLNGNSLSGRVPAAL-GGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred -----CCCCCEEECcCCcccccCChHH-hhccccCceEEecCCcccc
Confidence 6677777776653222333321 1112344556666555443
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.70 E-value=0.017 Score=36.14 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=15.4
Q ss_pred ccceeeccccccccccccccccccCCCCccEEEEccC
Q 044144 59 LLESLILHNLINMERIWIDQLKVESFNELKIIQAYNC 95 (356)
Q Consensus 59 ~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c 95 (356)
+|++|++.+ .++++++... ..+++|+.|+++++
T Consensus 2 ~L~~L~l~~-N~i~~l~~~l---~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSN-NQITDLPPEL---SNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETS-SS-SSHGGHG---TTCTTSSEEEETSS
T ss_pred cceEEEccC-CCCcccCchH---hCCCCCCEEEecCC
Confidence 455555555 2444443212 34566666666655
No 47
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.48 E-value=0.017 Score=54.85 Aligned_cols=34 Identities=32% Similarity=0.485 Sum_probs=14.9
Q ss_pred CCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEec
Q 044144 229 RFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRF 266 (356)
Q Consensus 229 ~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 266 (356)
.+++++.|++.+ +.+.++ +. +..+.+++.|++++
T Consensus 253 ~l~~l~~L~~s~-n~i~~i-~~--~~~~~~l~~L~~s~ 286 (394)
T COG4886 253 NLSNLETLDLSN-NQISSI-SS--LGSLTNLRELDLSG 286 (394)
T ss_pred cccccceecccc-cccccc-cc--ccccCccCEEeccC
Confidence 334455555543 344444 21 33444555555544
No 48
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.40 E-value=0.015 Score=36.46 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=13.1
Q ss_pred ccCeeeccccccceeecCCCCcCCCCcccEEeeccC
Q 044144 290 QLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRC 325 (356)
Q Consensus 290 ~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C 325 (356)
+|++|+++++ ++++++... ..+++|+.|++.++
T Consensus 2 ~L~~L~l~~N-~i~~l~~~l--~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNN-QITDLPPEL--SNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSS-S-SSHGGHG--TTCTTSSEEEETSS
T ss_pred cceEEEccCC-CCcccCchH--hCCCCCCEEEecCC
Confidence 3444444443 444443311 34444444444444
No 49
>PLN03150 hypothetical protein; Provisional
Probab=95.39 E-value=0.027 Score=56.83 Aligned_cols=37 Identities=16% Similarity=0.114 Sum_probs=15.5
Q ss_pred CCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecC
Q 044144 229 RFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFC 267 (356)
Q Consensus 229 ~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 267 (356)
.+++|+.|+++++ ++....| ..++.+++|+.|+++++
T Consensus 464 ~l~~L~~LdLs~N-~lsg~iP-~~l~~L~~L~~L~Ls~N 500 (623)
T PLN03150 464 SITSLEVLDLSYN-SFNGSIP-ESLGQLTSLRILNLNGN 500 (623)
T ss_pred CCCCCCEEECCCC-CCCCCCc-hHHhcCCCCCEEECcCC
Confidence 4444555554442 2322212 23334445555555444
No 50
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.38 E-value=0.0024 Score=53.54 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=48.6
Q ss_pred ccccccCCCcCeEEecce-eeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCccc
Q 044144 194 FNEKVALPNLEALEISAI-NVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDL 270 (356)
Q Consensus 194 ~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l 270 (356)
+..+..+++++.|.+.+| .+.+ |.-..+.. -.++|+.|+|++|+++++- ..+.+..+++|+.|.+.+.+.+
T Consensus 118 le~L~~l~~i~~l~l~~ck~~dD-~~L~~l~~----~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 118 LEHLRDLRSIKSLSLANCKYFDD-WCLERLGG----LAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HHHHhccchhhhheeccccchhh-HHHHHhcc----cccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhh
Confidence 344556777888888888 6666 43331111 3477888888888888887 6677778888888888876544
No 51
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.31 E-value=0.0023 Score=53.63 Aligned_cols=71 Identities=15% Similarity=0.134 Sum_probs=50.0
Q ss_pred ccccCCCcEEEEecCCCceEeecCCccc-ccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCcccc
Q 044144 25 TEGFSQLKLLWVQNNPDFFCIVDSRAMV-ACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNI 101 (356)
Q Consensus 25 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~ 101 (356)
..+++.++.|.+.+|..+... ... ..+.+++|+.|++++|+++++-.. .....|+||+.|.+.+.+...+.
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~----~L~~l~~~~~~L~~L~lsgC~rIT~~GL--~~L~~lknLr~L~l~~l~~v~~~ 192 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDW----CLERLGGLAPSLQDLDLSGCPRITDGGL--ACLLKLKNLRRLHLYDLPYVANL 192 (221)
T ss_pred HhccchhhhheeccccchhhH----HHHHhcccccchheeeccCCCeechhHH--HHHHHhhhhHHHHhcCchhhhch
Confidence 346778888888888766532 111 233678999999999999887632 33356899999999887665543
No 52
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=95.15 E-value=0.028 Score=53.36 Aligned_cols=40 Identities=25% Similarity=0.270 Sum_probs=30.9
Q ss_pred ccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccC
Q 044144 194 FNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHC 241 (356)
Q Consensus 194 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c 241 (356)
+..+..+++++.|++.++.++++ +. +..+.+++.|++++-
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i------~~--~~~~~~l~~L~~s~n 287 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSI------SS--LGSLTNLRELDLSGN 287 (394)
T ss_pred cchhccccccceecccccccccc------cc--ccccCccCEEeccCc
Confidence 45567788899999999988883 22 446789999999773
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.09 E-value=0.039 Score=46.51 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=15.9
Q ss_pred CcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCc
Q 044144 230 FQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 230 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 268 (356)
+|+|..|.+.+ ++++.+....-+..||+|+.|.+-+.+
T Consensus 87 ~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 87 LPNLKTLILTN-NSIQELGDLDPLASCPKLEYLTLLGNP 124 (233)
T ss_pred ccccceEEecC-cchhhhhhcchhccCCccceeeecCCc
Confidence 34455555443 233333222233344555555554443
No 54
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.99 E-value=0.00027 Score=69.51 Aligned_cols=17 Identities=24% Similarity=0.645 Sum_probs=13.4
Q ss_pred ccCCCCccEEEEccCCC
Q 044144 81 VESFNELKIIQAYNCDK 97 (356)
Q Consensus 81 ~~~l~~L~~L~l~~c~~ 97 (356)
...|.+||.|.+.+|+-
T Consensus 105 ifpF~sLr~LElrg~~L 121 (1096)
T KOG1859|consen 105 IFPFRSLRVLELRGCDL 121 (1096)
T ss_pred eccccceeeEEecCcch
Confidence 34588999999999854
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.51 E-value=0.001 Score=65.61 Aligned_cols=18 Identities=22% Similarity=0.137 Sum_probs=11.7
Q ss_pred cccccCcccceeeccccc
Q 044144 52 VACDAFPLLESLILHNLI 69 (356)
Q Consensus 52 ~~~~~~~~L~~L~l~~~~ 69 (356)
..+..|.+|+.|.+.+|.
T Consensus 103 i~ifpF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 103 ISIFPFRSLRVLELRGCD 120 (1096)
T ss_pred ceeccccceeeEEecCcc
Confidence 355566677777777764
No 56
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.49 E-value=0.012 Score=51.28 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=71.1
Q ss_pred cCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCc-CccccchhhhhhhcCCCCeEEEecCcccceeeccC
Q 044144 199 ALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCN-KLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISEN 277 (356)
Q Consensus 199 ~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~-~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~ 277 (356)
.+..|+.|.+.++.++++ . .++.+|+|++|.++.-+ ....-++ -.+..+|+|++|+++++. ++.+-.-.
T Consensus 41 ~~~~le~ls~~n~gltt~------~--~~P~Lp~LkkL~lsdn~~~~~~~l~-vl~e~~P~l~~l~ls~Nk-i~~lstl~ 110 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL------T--NFPKLPKLKKLELSDNYRRVSGGLE-VLAEKAPNLKVLNLSGNK-IKDLSTLR 110 (260)
T ss_pred cccchhhhhhhccceeec------c--cCCCcchhhhhcccCCcccccccce-ehhhhCCceeEEeecCCc-cccccccc
Confidence 456777777777766652 1 25567889999886421 2222112 233456999999999865 43332222
Q ss_pred CCCcCcccccCCccCeeeccccccceee-cCCCCcCCCCcccEEeeccCcCccccc
Q 044144 278 RADEVIPYFVFPQLTTLILQYLPKLRCL-YPGMHTSEWPALEIFSVFRCDKLKIFA 332 (356)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~-~~~~~~~~~~~L~~L~i~~C~~l~~l~ 332 (356)
.... +.+|..|.+.+|+-...- ....++.-+|+|.+++-.++..-+.-+
T Consensus 111 pl~~------l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~~ 160 (260)
T KOG2739|consen 111 PLKE------LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAPE 160 (260)
T ss_pred hhhh------hcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCccccc
Confidence 2333 677888888888654411 122344567888888877777655443
No 57
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=94.41 E-value=0.0021 Score=61.74 Aligned_cols=144 Identities=20% Similarity=0.218 Sum_probs=100.7
Q ss_pred ccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCC
Q 044144 181 SSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQ 260 (356)
Q Consensus 181 ~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 260 (356)
+.+.+.......++..+..+..|+.|+++.+++.. +|... ++--|+.|.+++ ++++.+ |..+. ..++|.
T Consensus 101 e~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~------lp~~l--C~lpLkvli~sN-Nkl~~l-p~~ig-~~~tl~ 169 (722)
T KOG0532|consen 101 ESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSH------LPDGL--CDLPLKVLIVSN-NKLTSL-PEEIG-LLPTLA 169 (722)
T ss_pred HHHHHHhccceecchhhhhhhHHHHhhhccchhhc------CChhh--hcCcceeEEEec-CccccC-Ccccc-cchhHH
Confidence 33333333344466777888899999999987777 44322 445689998876 799998 76665 788999
Q ss_pred eEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCcccccccccCCCC
Q 044144 261 HLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAADLSQNNE 340 (356)
Q Consensus 261 ~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~~ 340 (356)
+|+.+.|. +..+. ....+ +.+|+.|.++.. ++..++... . .=.|..|+++ |.++..+|.+...+.-
T Consensus 170 ~ld~s~ne-i~slp--sql~~------l~slr~l~vrRn-~l~~lp~El--~-~LpLi~lDfS-cNkis~iPv~fr~m~~ 235 (722)
T KOG0532|consen 170 HLDVSKNE-IQSLP--SQLGY------LTSLRDLNVRRN-HLEDLPEEL--C-SLPLIRLDFS-CNKISYLPVDFRKMRH 235 (722)
T ss_pred Hhhhhhhh-hhhch--HHhhh------HHHHHHHHHhhh-hhhhCCHHH--h-CCceeeeecc-cCceeecchhhhhhhh
Confidence 99999886 54552 33333 778988888765 666776654 2 3357888876 8999999998876666
Q ss_pred CCCCCCCCC
Q 044144 341 NDQLGIPAQ 349 (356)
Q Consensus 341 ~~~~~~~~~ 349 (356)
.+.+.+-++
T Consensus 236 Lq~l~LenN 244 (722)
T KOG0532|consen 236 LQVLQLENN 244 (722)
T ss_pred heeeeeccC
Confidence 666655543
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.87 E-value=0.32 Score=37.83 Aligned_cols=14 Identities=14% Similarity=0.294 Sum_probs=5.0
Q ss_pred hhhhhcCCCCeEEE
Q 044144 251 SMIGSLKHLQHLEV 264 (356)
Q Consensus 251 ~~~~~l~~L~~L~i 264 (356)
..+..+++++.+.+
T Consensus 52 ~~F~~~~~l~~i~~ 65 (129)
T PF13306_consen 52 NAFSNCKSLESITF 65 (129)
T ss_dssp TTTTT-TT-EEEEE
T ss_pred eeeecccccccccc
Confidence 33334444444444
No 59
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.70 E-value=0.0055 Score=53.97 Aligned_cols=64 Identities=19% Similarity=0.228 Sum_probs=43.7
Q ss_pred ccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCccc
Q 044144 198 VALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDL 270 (356)
Q Consensus 198 ~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l 270 (356)
..+|.|+.|.++-++++++ .. +..+++|+.|.+.. +.+.++-....+.++|+|+.|.|.+++.-
T Consensus 38 ~kMp~lEVLsLSvNkIssL------~p--l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc 101 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSL------AP--LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCC 101 (388)
T ss_pred HhcccceeEEeeccccccc------hh--HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcc
Confidence 4467777777777776662 21 45677788777764 45666545567778888888888877654
No 60
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.60 E-value=0.094 Score=25.44 Aligned_cols=16 Identities=13% Similarity=0.164 Sum_probs=6.6
Q ss_pred cccEEeeccCcCccccc
Q 044144 316 ALEIFSVFRCDKLKIFA 332 (356)
Q Consensus 316 ~L~~L~i~~C~~l~~l~ 332 (356)
+|+.|++++|. ++.+|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 45555555555 55544
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.31 E-value=0.05 Score=48.60 Aligned_cols=122 Identities=17% Similarity=0.128 Sum_probs=68.7
Q ss_pred cccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccce
Q 044144 193 LFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQE 272 (356)
Q Consensus 193 l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~ 272 (356)
.+..+.++|.|+.|+|+.+.+... ... .|. ...+|++|-+.+ ..+..--..+....+|.+++|.++++.--.-
T Consensus 89 I~~ile~lP~l~~LNls~N~L~s~-I~~-lp~----p~~nl~~lVLNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~ 161 (418)
T KOG2982|consen 89 IGAILEQLPALTTLNLSCNSLSSD-IKS-LPL----PLKNLRVLVLNG-TGLSWTQSTSSLDDLPKVTELHMSDNSLRQL 161 (418)
T ss_pred HHHHHhcCccceEeeccCCcCCCc-ccc-Ccc----cccceEEEEEcC-CCCChhhhhhhhhcchhhhhhhhccchhhhh
Confidence 344457789999999998866652 111 221 346788887755 4444432345566788888888887642222
Q ss_pred eeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 273 IISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 273 i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
....+.+.. .-|.+++|.+..|+...-.........+|++..+-+..||
T Consensus 162 n~Dd~c~e~-----~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P 210 (418)
T KOG2982|consen 162 NLDDNCIED-----WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP 210 (418)
T ss_pred ccccccccc-----cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence 211111111 1246666777666554333332223556777776666665
No 62
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=91.54 E-value=0.063 Score=51.41 Aligned_cols=60 Identities=27% Similarity=0.312 Sum_probs=33.0
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCc
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 268 (356)
+..+++|+.|+++++++++++. +..++.|+.|++.+ +.+.++ ..+..++.|+.+++.++.
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~--------l~~l~~L~~L~l~~-N~i~~~---~~~~~l~~L~~l~l~~n~ 173 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEG--------LSTLTLLKELNLSG-NLISDI---SGLESLKSLKLLDLSYNR 173 (414)
T ss_pred hhhhhcchheeccccccccccc--------hhhccchhhheecc-Ccchhc---cCCccchhhhcccCCcch
Confidence 4556666666666666665321 22445566666655 344444 223335666666666654
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.00 E-value=2.2 Score=32.96 Aligned_cols=60 Identities=13% Similarity=0.238 Sum_probs=29.2
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEec
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRF 266 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 266 (356)
...+++|+.+.+.+. ++.+ +...|..+++|+.+.+.+ .+..+ +...+..+++|+.+.+..
T Consensus 31 F~~~~~l~~i~~~~~-~~~i------~~~~F~~~~~l~~i~~~~--~~~~i-~~~~F~~~~~l~~i~~~~ 90 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSI------GDNAFSNCKSLESITFPN--NLKSI-GDNAFSNCTNLKNIDIPS 90 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-------TTTTTT-TT-EEEEETS--TT-EE--TTTTTT-TTECEEEETT
T ss_pred ccccccccccccccc-cccc------ceeeeecccccccccccc--ccccc-ccccccccccccccccCc
Confidence 344556777766653 3332 222355666677777743 44444 445555667777776643
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=89.64 E-value=0.73 Score=39.04 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=7.5
Q ss_pred ccccccEEecCCC
Q 044144 138 ELAQLRYLSLGNL 150 (356)
Q Consensus 138 ~~~~L~~L~l~~~ 150 (356)
.+|+|+.|+.++.
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 3466666666554
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.46 E-value=0.04 Score=48.75 Aligned_cols=104 Identities=19% Similarity=0.179 Sum_probs=68.1
Q ss_pred cCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCC
Q 044144 199 ALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENR 278 (356)
Q Consensus 199 ~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 278 (356)
.+.+.++|+.+||.++++-... .++.|+.|.++= +++..+ +-+..|++|++|++..+. ++.+ +.
T Consensus 17 dl~~vkKLNcwg~~L~DIsic~--------kMp~lEVLsLSv-NkIssL---~pl~rCtrLkElYLRkN~-I~sl---dE 80 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDISICE--------KMPLLEVLSLSV-NKISSL---APLQRCTRLKELYLRKNC-IESL---DE 80 (388)
T ss_pred HHHHhhhhcccCCCccHHHHHH--------hcccceeEEeec-cccccc---hhHHHHHHHHHHHHHhcc-cccH---HH
Confidence 3678999999999998864333 678899998863 677777 456788999999998753 4333 11
Q ss_pred CCcCcccccCCccCeeeccccccceeecCCC---CcCCCCcccEEe
Q 044144 279 ADEVIPYFVFPQLTTLILQYLPKLRCLYPGM---HTSEWPALEIFS 321 (356)
Q Consensus 279 ~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~---~~~~~~~L~~L~ 321 (356)
... ...+|+|++|-|...|=-..-+... ....+|+|++|+
T Consensus 81 L~Y---LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 81 LEY---LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHH---HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 111 1227788888777665443332221 113567777775
No 66
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=86.69 E-value=0.18 Score=48.37 Aligned_cols=106 Identities=16% Similarity=0.164 Sum_probs=65.8
Q ss_pred ccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeE
Q 044144 136 KIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDK 215 (356)
Q Consensus 136 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~ 215 (356)
...+.+|+.+.+.+- +++.+... ...+..+.++.++...-. -...+..++.|+.|++.+|.++.
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~--------------l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L~l~~N~i~~ 154 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENL--------------LSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKELNLSGNLISD 154 (414)
T ss_pred cccccceeeeecccc-chhhcccc--------------hhhhhcchheeccccccc-cccchhhccchhhheeccCcchh
Confidence 456777777777662 33332220 124555777776655421 22334556779999999998877
Q ss_pred EcccCCCCCCCCCCCcCccEEeeccCcCccccchh-hhhhhcCCCCeEEEecCc
Q 044144 216 IWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSA-SMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 216 ~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~-~~~~~l~~L~~L~i~~c~ 268 (356)
+ +. +..+++|+.+++.++ .+..+ .. . ...+.+++.+.+.+..
T Consensus 155 ~------~~--~~~l~~L~~l~l~~n-~i~~i-e~~~-~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 155 I------SG--LESLKSLKLLDLSYN-RIVDI-ENDE-LSELISLEELDLGGNS 197 (414)
T ss_pred c------cC--CccchhhhcccCCcc-hhhhh-hhhh-hhhccchHHHhccCCc
Confidence 3 22 445788899988774 55555 22 1 4667888888888875
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=85.48 E-value=0.56 Score=41.15 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=48.9
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCcc--ccchhhhhhhcCCCCeEEEecCccc
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLK--YIFSASMIGSLKHLQHLEVRFCEDL 270 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~--~l~~~~~~~~l~~L~~L~i~~c~~l 270 (356)
+..+|+|+.+.++++++..+- . ++. +..+.+|..|++.+|+-.. +- -..++.-+++|+.|+-.++..-
T Consensus 87 ~e~~P~l~~l~ls~Nki~~ls--t-l~p--l~~l~nL~~Ldl~n~~~~~l~dy-re~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 87 AEKAPNLKVLNLSGNKIKDLS--T-LRP--LKELENLKSLDLFNCSVTNLDDY-REKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred hhhCCceeEEeecCCcccccc--c-cch--hhhhcchhhhhcccCCccccccH-HHHHHHHhhhhccccccccCCc
Confidence 345699999999999665421 1 222 4577899999999987543 33 4566778899999988887654
No 68
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=85.27 E-value=0.52 Score=25.52 Aligned_cols=17 Identities=24% Similarity=0.301 Sum_probs=12.2
Q ss_pred cCccEEeeccCcCcccc
Q 044144 231 QNLTRLIVWHCNKLKYI 247 (356)
Q Consensus 231 ~~L~~L~i~~c~~l~~l 247 (356)
++|++|++++|+++++.
T Consensus 2 ~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 2 PNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCEeCCCCCCCcCHH
Confidence 56777777777777665
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=82.60 E-value=0.82 Score=23.64 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=11.4
Q ss_pred cccEEeeccCcCccccccc
Q 044144 316 ALEIFSVFRCDKLKIFAAD 334 (356)
Q Consensus 316 ~L~~L~i~~C~~l~~l~~~ 334 (356)
+|++|++++| +++.+|.+
T Consensus 1 ~L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp TESEEEETSS-EESEEGTT
T ss_pred CccEEECCCC-cCEeCChh
Confidence 3666777776 66666654
No 70
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=72.69 E-value=0.33 Score=44.37 Aligned_cols=120 Identities=15% Similarity=0.102 Sum_probs=63.7
Q ss_pred cCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCcccc---chhhhhhhcCCCCeEEEecCcccceeec
Q 044144 199 ALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYI---FSASMIGSLKHLQHLEVRFCEDLQEIIS 275 (356)
Q Consensus 199 ~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l---~~~~~~~~l~~L~~L~i~~c~~l~~i~~ 275 (356)
.-+.|+.+...+|.+.+. ... .-+..|...+.|+.+.+.+- .+..- .-...+..+++|+.|+++|+. +..-
T Consensus 155 ~~~~Lrv~i~~rNrlen~-ga~-~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~e-- 228 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENG-GAT-ALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLE-- 228 (382)
T ss_pred CCcceEEEEeeccccccc-cHH-HHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeecccch-hhhH--
Confidence 346788888877766551 000 00113445577777777652 22221 123445678888888888875 2110
Q ss_pred cCCCCcCcccccCCccCeeeccccccceeecCCCC----cCCCCcccEEeeccCc
Q 044144 276 ENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMH----TSEWPALEIFSVFRCD 326 (356)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~----~~~~~~L~~L~i~~C~ 326 (356)
.+..-......++.|++|++.+| .++.-....+ ....|+|+.+.+.+|.
T Consensus 229 -gs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 229 -GSVALAKALSSWPHLRELNLGDC-LLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred -HHHHHHHHhcccchheeeccccc-ccccccHHHHHHHHhccCCCCceeccCcch
Confidence 00000112233778888888888 5544322111 1346777777766654
No 71
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=64.57 E-value=1.8 Score=39.75 Aligned_cols=11 Identities=9% Similarity=0.144 Sum_probs=6.7
Q ss_pred CCccEEEEccC
Q 044144 85 NELKIIQAYNC 95 (356)
Q Consensus 85 ~~L~~L~l~~c 95 (356)
|.|+++++++.
T Consensus 92 ~~L~~ldLSDN 102 (382)
T KOG1909|consen 92 PKLQKLDLSDN 102 (382)
T ss_pred CceeEeecccc
Confidence 46666666654
No 72
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=61.31 E-value=4.8 Score=21.46 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=7.4
Q ss_pred CCcCeEEecceeeeE
Q 044144 201 PNLEALEISAINVDK 215 (356)
Q Consensus 201 ~~L~~L~l~~~~l~~ 215 (356)
++|+.|++.+|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00370 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555554444
No 73
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=61.31 E-value=4.8 Score=21.46 Aligned_cols=15 Identities=33% Similarity=0.612 Sum_probs=7.4
Q ss_pred CCcCeEEecceeeeE
Q 044144 201 PNLEALEISAINVDK 215 (356)
Q Consensus 201 ~~L~~L~l~~~~l~~ 215 (356)
++|+.|++.+|+++.
T Consensus 2 ~~L~~L~L~~N~l~~ 16 (26)
T smart00369 2 PNLRELDLSNNQLSS 16 (26)
T ss_pred CCCCEEECCCCcCCc
Confidence 345555555554444
No 74
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=47.78 E-value=12 Score=19.47 Aligned_cols=12 Identities=17% Similarity=0.310 Sum_probs=5.8
Q ss_pred CCCCeEEEecCc
Q 044144 257 KHLQHLEVRFCE 268 (356)
Q Consensus 257 ~~L~~L~i~~c~ 268 (356)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 456666666654
No 75
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=46.69 E-value=4.3 Score=32.44 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=16.4
Q ss_pred CcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCc
Q 044144 230 FQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 230 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 268 (356)
||-++.|++.+ +++.++ |.+ +...+.|+.|+++.++
T Consensus 76 f~t~t~lNl~~-neisdv-PeE-~Aam~aLr~lNl~~N~ 111 (177)
T KOG4579|consen 76 FPTATTLNLAN-NEISDV-PEE-LAAMPALRSLNLRFNP 111 (177)
T ss_pred cchhhhhhcch-hhhhhc-hHH-HhhhHHhhhcccccCc
Confidence 34444444443 344444 433 3334555555555443
No 76
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=39.15 E-value=6.6 Score=31.42 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=41.4
Q ss_pred cCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeecccccc
Q 044144 231 QNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPK 301 (356)
Q Consensus 231 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~ 301 (356)
.-|+..++++ +.+++. |......++.++.|++.+.. +..+. +.... +|.|+.|.+++.|-
T Consensus 53 ~el~~i~ls~-N~fk~f-p~kft~kf~t~t~lNl~~ne-isdvP--eE~Aa------m~aLr~lNl~~N~l 112 (177)
T KOG4579|consen 53 YELTKISLSD-NGFKKF-PKKFTIKFPTATTLNLANNE-ISDVP--EELAA------MPALRSLNLRFNPL 112 (177)
T ss_pred ceEEEEeccc-chhhhC-CHHHhhccchhhhhhcchhh-hhhch--HHHhh------hHHhhhcccccCcc
Confidence 4466667766 567776 76666677788888888865 65552 22443 88999999988743
No 77
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=31.81 E-value=37 Score=18.41 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=10.6
Q ss_pred CCcCeEEecceeeeE
Q 044144 201 PNLEALEISAINVDK 215 (356)
Q Consensus 201 ~~L~~L~l~~~~l~~ 215 (356)
.+|+.|++.+++++.
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 567777777776655
No 78
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=24.31 E-value=30 Score=31.09 Aligned_cols=14 Identities=14% Similarity=-0.031 Sum_probs=7.5
Q ss_pred hhcCCCCeEEEecC
Q 044144 254 GSLKHLQHLEVRFC 267 (356)
Q Consensus 254 ~~l~~L~~L~i~~c 267 (356)
..+.+|+.|++.++
T Consensus 211 ~y~~~LevLDlqDN 224 (388)
T COG5238 211 FYSHSLEVLDLQDN 224 (388)
T ss_pred HHhCcceeeecccc
Confidence 34455555555554
No 79
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=20.55 E-value=57 Score=17.75 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=8.9
Q ss_pred CCcCeEEecceeeeE
Q 044144 201 PNLEALEISAINVDK 215 (356)
Q Consensus 201 ~~L~~L~l~~~~l~~ 215 (356)
++|+.|.++++++++
T Consensus 2 ~~L~~L~vs~N~Lt~ 16 (26)
T smart00364 2 PSLKELNVSNNQLTS 16 (26)
T ss_pred cccceeecCCCcccc
Confidence 356666666665555
No 80
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=20.23 E-value=22 Score=34.95 Aligned_cols=66 Identities=15% Similarity=0.025 Sum_probs=32.7
Q ss_pred ccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCc-CccccchhhhhhhcCCCCeEEEecCc
Q 044144 198 VALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCN-KLKYIFSASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 198 ~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~-~l~~l~~~~~~~~l~~L~~L~i~~c~ 268 (356)
..+|.+..+.+++++|-++-... + .....|+|+.|++++.. .+.+. +...--....|++|-+.+++
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~s---s-lsq~apklk~L~LS~N~~~~~~~-~el~K~k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALS---S-LSQIAPKLKTLDLSHNHSKISSE-SELDKLKGLPLEELVLEGNP 281 (585)
T ss_pred cCCcceeeeecccchhhchhhhh---H-HHHhcchhheeecccchhhhcch-hhhhhhcCCCHHHeeecCCc
Confidence 34667777777776544421111 1 12245777777777631 22222 21222233456666666665
Done!