Query 044144
Match_columns 356
No_of_seqs 139 out of 1298
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 20:40:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044144.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044144hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fmz_A Internalin; leucine ric 99.7 3.9E-17 1.3E-21 150.8 17.8 154 136-331 173-326 (347)
2 3v47_A TOLL-like receptor 5B a 99.7 8.1E-16 2.8E-20 147.1 24.6 136 178-331 275-411 (455)
3 4fcg_A Uncharacterized protein 99.7 2.3E-16 7.8E-21 144.8 15.7 58 28-95 80-137 (328)
4 4fmz_A Internalin; leucine ric 99.7 4.9E-16 1.7E-20 143.4 17.7 254 2-326 43-298 (347)
5 4fcg_A Uncharacterized protein 99.7 8.1E-16 2.8E-20 141.2 16.5 230 3-324 81-310 (328)
6 2id5_A Lingo-1, leucine rich r 99.7 1.7E-15 6E-20 145.8 17.4 84 3-96 32-115 (477)
7 1o6v_A Internalin A; bacterial 99.7 4.6E-15 1.6E-19 142.6 19.9 81 229-327 285-365 (466)
8 3o6n_A APL1; leucine-rich repe 99.7 3.8E-15 1.3E-19 139.8 18.8 123 180-326 228-350 (390)
9 3t6q_A CD180 antigen; protein- 99.7 1.1E-14 3.8E-19 144.3 22.8 83 178-267 278-360 (606)
10 3vq2_A TLR4, TOLL-like recepto 99.7 6E-15 2.1E-19 146.2 20.6 262 25-327 281-557 (606)
11 2id5_A Lingo-1, leucine rich r 99.7 9.2E-15 3.1E-19 140.8 21.3 59 29-95 32-90 (477)
12 3v47_A TOLL-like receptor 5B a 99.7 6.7E-15 2.3E-19 140.7 20.0 308 3-349 30-405 (455)
13 3vq2_A TLR4, TOLL-like recepto 99.6 1.3E-14 4.6E-19 143.7 21.6 164 179-353 377-559 (606)
14 1o6v_A Internalin A; bacterial 99.6 9.4E-15 3.2E-19 140.4 19.8 131 176-334 263-393 (466)
15 3zyj_A Leucine-rich repeat-con 99.6 1.6E-14 5.6E-19 137.7 20.9 222 29-326 64-290 (440)
16 3zyi_A Leucine-rich repeat-con 99.6 2E-14 6.7E-19 137.7 21.2 222 29-326 75-301 (452)
17 3rgz_A Protein brassinosteroid 99.6 7.5E-15 2.6E-19 149.7 19.3 173 136-335 486-724 (768)
18 4eco_A Uncharacterized protein 99.6 3.6E-15 1.2E-19 148.9 15.6 131 2-150 205-363 (636)
19 3oja_B Anopheles plasmodium-re 99.6 1.1E-14 3.7E-19 144.3 18.3 124 179-326 233-356 (597)
20 3rgz_A Protein brassinosteroid 99.6 8.2E-15 2.8E-19 149.4 17.5 45 288-334 393-437 (768)
21 3bz5_A Internalin-J, INLJ; leu 99.6 8.8E-15 3E-19 140.3 16.7 81 2-101 41-121 (457)
22 4eco_A Uncharacterized protein 99.6 2.1E-15 7.2E-20 150.5 12.7 303 2-349 248-597 (636)
23 3o6n_A APL1; leucine-rich repe 99.6 3.3E-14 1.1E-18 133.4 19.7 284 3-335 45-337 (390)
24 4ecn_A Leucine-rich repeat pro 99.6 1.7E-14 5.7E-19 147.8 17.9 296 2-336 490-826 (876)
25 3t6q_A CD180 antigen; protein- 99.6 1.3E-13 4.3E-18 136.7 22.7 272 4-326 255-534 (606)
26 1xku_A Decorin; proteoglycan, 99.6 1.2E-13 4E-18 126.6 19.9 247 28-326 51-304 (330)
27 4ecn_A Leucine-rich repeat pro 99.6 1E-14 3.4E-19 149.4 14.0 227 2-267 447-707 (876)
28 2ft3_A Biglycan; proteoglycan, 99.6 2.1E-13 7.1E-18 125.1 21.4 245 28-327 53-306 (332)
29 1ogq_A PGIP-2, polygalacturona 99.6 3.9E-14 1.3E-18 129.0 16.0 251 29-332 50-308 (313)
30 3j0a_A TOLL-like receptor 5; m 99.6 2.5E-13 8.5E-18 139.8 23.1 39 227-267 286-324 (844)
31 2z63_A TOLL-like receptor 4, v 99.6 1.4E-13 4.9E-18 135.1 20.1 140 177-333 372-511 (570)
32 2z80_A TOLL-like receptor 2, v 99.6 4.2E-14 1.4E-18 130.9 15.4 237 28-330 51-316 (353)
33 1ziw_A TOLL-like receptor 3; i 99.6 1.6E-13 5.6E-18 137.8 20.5 90 2-96 271-364 (680)
34 3bz5_A Internalin-J, INLJ; leu 99.6 5.6E-14 1.9E-18 134.7 15.7 226 2-273 63-302 (457)
35 2z81_A CD282 antigen, TOLL-lik 99.6 1.2E-13 4.2E-18 135.1 18.2 84 3-96 26-109 (549)
36 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 2.2E-13 7.6E-18 133.9 20.0 58 289-350 450-508 (562)
37 3oja_B Anopheles plasmodium-re 99.5 1.4E-13 4.7E-18 136.4 18.3 262 2-332 74-340 (597)
38 1xku_A Decorin; proteoglycan, 99.5 4.3E-13 1.5E-17 122.8 20.4 113 197-332 167-279 (330)
39 2z7x_B TOLL-like receptor 1, v 99.5 1.1E-13 3.7E-18 134.7 17.0 140 198-350 321-479 (520)
40 2z7x_B TOLL-like receptor 1, v 99.5 2.4E-13 8.1E-18 132.3 19.4 82 3-97 21-102 (520)
41 2xwt_C Thyrotropin receptor; s 99.5 1.1E-13 3.8E-18 120.9 15.2 203 29-328 31-239 (239)
42 2z63_A TOLL-like receptor 4, v 99.5 1.8E-13 6.3E-18 134.4 17.3 251 24-328 277-531 (570)
43 1ziw_A TOLL-like receptor 3; i 99.5 1E-12 3.4E-17 132.0 21.5 303 3-334 222-554 (680)
44 2ft3_A Biglycan; proteoglycan, 99.5 7.3E-13 2.5E-17 121.4 17.2 271 3-326 54-331 (332)
45 1ozn_A Reticulon 4 receptor; N 99.5 7.8E-13 2.7E-17 118.5 16.8 67 27-101 30-96 (285)
46 2z66_A Variable lymphocyte rec 99.5 5.2E-13 1.8E-17 120.9 15.7 228 28-326 27-259 (306)
47 2xwt_C Thyrotropin receptor; s 99.5 6E-13 2E-17 116.2 15.1 188 58-334 31-223 (239)
48 3g06_A SSPH2 (leucine-rich rep 99.5 1.7E-12 5.7E-17 128.6 19.7 250 4-327 41-296 (622)
49 3a79_B TLR6, VLRB.59, TOLL-lik 99.5 1.4E-12 4.6E-17 128.3 18.7 109 198-327 400-509 (562)
50 1ogq_A PGIP-2, polygalacturona 99.5 4.9E-13 1.7E-17 121.7 14.4 242 58-350 50-302 (313)
51 3zyi_A Leucine-rich repeat-con 99.5 1.1E-12 3.9E-17 125.3 17.0 127 3-150 75-206 (452)
52 2z81_A CD282 antigen, TOLL-lik 99.5 4.1E-12 1.4E-16 124.2 20.5 87 2-96 73-159 (549)
53 3o53_A Protein LRIM1, AGAP0063 99.5 2.4E-13 8.3E-18 123.9 11.0 243 27-330 32-277 (317)
54 3zyj_A Leucine-rich repeat-con 99.5 7.9E-13 2.7E-17 126.0 14.9 221 3-268 64-290 (440)
55 4ay9_X Follicle-stimulating ho 99.4 4.1E-12 1.4E-16 117.4 18.4 221 29-324 30-255 (350)
56 1ozn_A Reticulon 4 receptor; N 99.4 1.1E-12 3.7E-17 117.6 13.5 85 3-96 32-116 (285)
57 3oja_A Leucine-rich immune mol 99.4 6E-13 2.1E-17 128.5 12.6 215 27-300 32-248 (487)
58 3g06_A SSPH2 (leucine-rich rep 99.4 3E-12 1E-16 126.8 16.9 226 3-300 61-295 (622)
59 3j0a_A TOLL-like receptor 5; m 99.4 8.7E-12 3E-16 128.4 20.6 277 3-324 24-347 (844)
60 3o53_A Protein LRIM1, AGAP0063 99.4 1.8E-13 6.1E-18 124.8 6.8 266 2-329 33-300 (317)
61 1p9a_G Platelet glycoprotein I 99.4 7E-12 2.4E-16 112.8 17.2 200 26-326 7-206 (290)
62 2z66_A Variable lymphocyte rec 99.4 2E-12 6.8E-17 117.0 13.7 112 197-326 122-234 (306)
63 1h6u_A Internalin H; cell adhe 99.4 2.5E-12 8.5E-17 116.8 13.1 59 26-96 38-96 (308)
64 2ast_B S-phase kinase-associat 99.4 8.1E-14 2.8E-18 127.8 3.2 88 3-100 70-157 (336)
65 2p1m_B Transport inhibitor res 99.4 1.9E-14 6.4E-19 142.1 -1.3 89 2-96 65-167 (594)
66 2o6q_A Variable lymphocyte rec 99.4 1.7E-11 5.9E-16 108.9 17.1 35 58-95 37-71 (270)
67 3ogk_B Coronatine-insensitive 99.4 4E-14 1.4E-18 139.8 -0.0 89 2-96 72-175 (592)
68 3rfs_A Internalin B, repeat mo 99.4 6E-12 2E-16 112.1 12.7 179 25-299 37-215 (272)
69 3oja_A Leucine-rich immune mol 99.4 1.7E-11 5.8E-16 118.3 16.8 241 2-302 33-275 (487)
70 2p1m_B Transport inhibitor res 99.3 3.8E-14 1.3E-18 140.0 -2.1 39 288-327 455-493 (594)
71 2ast_B S-phase kinase-associat 99.3 2.1E-13 7.3E-18 124.9 2.3 196 5-268 49-258 (336)
72 1p9a_G Platelet glycoprotein I 99.3 4.9E-11 1.7E-15 107.2 17.2 198 2-300 9-206 (290)
73 2z62_A TOLL-like receptor 4, v 99.3 3.4E-11 1.2E-15 107.3 15.9 209 29-331 28-246 (276)
74 3rfs_A Internalin B, repeat mo 99.3 2.8E-11 9.7E-16 107.7 15.3 112 197-326 105-216 (272)
75 1jl5_A Outer protein YOPM; leu 99.3 7.2E-11 2.4E-15 112.9 18.7 50 232-299 318-367 (454)
76 1jl5_A Outer protein YOPM; leu 99.3 5.3E-12 1.8E-16 120.8 10.8 15 136-150 149-163 (454)
77 2z80_A TOLL-like receptor 2, v 99.3 2.2E-11 7.6E-16 112.5 14.1 249 3-300 52-312 (353)
78 1h6u_A Internalin H; cell adhe 99.3 3.9E-11 1.3E-15 108.8 14.4 79 2-96 40-118 (308)
79 2o6q_A Variable lymphocyte rec 99.3 6.7E-11 2.3E-15 105.1 15.2 180 29-300 37-216 (270)
80 3ogk_B Coronatine-insensitive 99.3 1.1E-12 3.6E-17 129.6 2.8 118 200-326 402-524 (592)
81 1wwl_A Monocyte differentiatio 99.3 3.8E-12 1.3E-16 115.7 5.8 109 198-325 198-306 (312)
82 4ay9_X Follicle-stimulating ho 99.2 2.4E-10 8.3E-15 105.4 15.4 207 57-333 29-241 (350)
83 1wwl_A Monocyte differentiatio 99.2 3.1E-11 1.1E-15 109.6 8.6 202 27-299 93-306 (312)
84 2z62_A TOLL-like receptor 4, v 99.2 2.7E-10 9.2E-15 101.4 14.1 83 4-96 29-111 (276)
85 3m19_A Variable lymphocyte rec 99.2 6.2E-10 2.1E-14 97.7 15.6 86 198-299 104-189 (251)
86 1h6t_A Internalin B; cell adhe 99.1 2.6E-10 8.9E-15 102.5 11.7 58 26-95 43-100 (291)
87 4g8a_A TOLL-like receptor 4; l 99.1 9.4E-10 3.2E-14 108.9 16.1 111 197-325 465-577 (635)
88 4glp_A Monocyte differentiatio 99.1 6.8E-11 2.3E-15 107.2 6.6 39 57-96 90-128 (310)
89 4glp_A Monocyte differentiatio 99.1 2.3E-10 8E-15 103.7 8.6 87 5-97 66-157 (310)
90 4ezg_A Putative uncharacterize 99.1 4.6E-10 1.6E-14 94.8 9.5 84 227-325 108-191 (197)
91 4ezg_A Putative uncharacterize 99.1 7.9E-10 2.7E-14 93.3 10.7 114 197-332 62-175 (197)
92 1m9s_A Internalin B; cell inva 99.1 6.1E-10 2.1E-14 110.0 11.5 58 26-95 40-97 (605)
93 4g8a_A TOLL-like receptor 4; l 99.0 6.7E-09 2.3E-13 102.7 16.8 226 2-300 348-578 (635)
94 1h6t_A Internalin B; cell adhe 99.0 3.7E-09 1.3E-13 94.9 13.5 167 2-268 45-211 (291)
95 1m9s_A Internalin B; cell inva 99.0 1.6E-09 5.5E-14 107.0 11.9 167 54-299 39-207 (605)
96 1z7x_W Ribonuclease inhibitor; 99.0 6E-12 2E-16 120.3 -5.8 141 178-326 256-409 (461)
97 2ca6_A RAN GTPase-activating p 99.0 4.8E-11 1.6E-15 111.6 -0.3 70 26-96 29-105 (386)
98 1z7x_W Ribonuclease inhibitor; 98.9 9.5E-12 3.3E-16 118.9 -6.7 291 3-326 3-324 (461)
99 2ca6_A RAN GTPase-activating p 98.9 4.8E-10 1.7E-14 104.7 4.9 89 2-97 31-134 (386)
100 3m19_A Variable lymphocyte rec 98.9 1.8E-08 6.1E-13 88.3 14.2 155 140-326 35-190 (251)
101 2o6s_A Variable lymphocyte rec 98.9 1.2E-08 4E-13 86.7 12.6 62 199-268 98-159 (208)
102 2ell_A Acidic leucine-rich nuc 98.9 3.5E-09 1.2E-13 86.8 8.1 118 196-332 44-163 (168)
103 3goz_A Leucine-rich repeat-con 98.9 5.4E-10 1.9E-14 103.5 3.3 116 202-326 168-295 (362)
104 3e6j_A Variable lymphocyte rec 98.9 1E-08 3.5E-13 88.6 10.6 112 196-326 59-170 (229)
105 2o6s_A Variable lymphocyte rec 98.9 1.2E-08 4.2E-13 86.6 10.9 109 198-324 49-157 (208)
106 2v9t_B SLIT homolog 2 protein 98.9 1.3E-08 4.6E-13 87.3 11.0 112 197-326 52-163 (220)
107 3sb4_A Hypothetical leucine ri 98.8 4.8E-08 1.6E-12 89.1 13.7 103 199-321 224-327 (329)
108 2v70_A SLIT-2, SLIT homolog 2 98.8 3.3E-08 1.1E-12 84.9 11.6 112 197-326 53-164 (220)
109 1xeu_A Internalin C; cellular 98.8 5.3E-09 1.8E-13 92.5 6.3 60 197-268 124-183 (263)
110 2v70_A SLIT-2, SLIT homolog 2 98.8 5.7E-08 1.9E-12 83.4 12.3 63 198-268 102-164 (220)
111 1xeu_A Internalin C; cellular 98.8 3.3E-08 1.1E-12 87.3 11.0 120 179-326 64-183 (263)
112 3e6j_A Variable lymphocyte rec 98.8 5.1E-08 1.7E-12 84.2 11.1 130 201-350 40-170 (229)
113 2je0_A Acidic leucine-rich nuc 98.8 7E-09 2.4E-13 83.2 5.2 111 196-324 37-149 (149)
114 3cvr_A Invasion plasmid antige 98.7 6.9E-08 2.4E-12 94.5 12.7 106 200-329 139-244 (571)
115 1dce_A Protein (RAB geranylger 98.7 3E-10 1E-14 111.5 -4.7 106 197-321 459-566 (567)
116 2xot_A Amphoterin-induced prot 98.7 4.1E-08 1.4E-12 90.8 9.9 158 57-300 38-200 (361)
117 2xot_A Amphoterin-induced prot 98.7 1E-07 3.5E-12 88.1 10.7 116 199-332 62-179 (361)
118 1a9n_A U2A', U2A'; complex (nu 98.7 3.9E-08 1.3E-12 81.2 7.0 110 200-327 41-152 (176)
119 3cvr_A Invasion plasmid antige 98.6 1.4E-07 4.9E-12 92.3 11.9 57 30-102 60-116 (571)
120 2v9t_B SLIT homolog 2 protein 98.6 3.4E-07 1.2E-11 78.5 12.1 130 201-349 32-162 (220)
121 3sb4_A Hypothetical leucine ri 98.6 6.5E-07 2.2E-11 81.5 14.3 81 197-295 246-327 (329)
122 3goz_A Leucine-rich repeat-con 98.6 1.6E-09 5.4E-14 100.4 -3.5 229 28-326 21-264 (362)
123 2o6r_A Variable lymphocyte rec 98.6 2.9E-07 1E-11 75.9 10.6 110 200-327 27-136 (177)
124 1w8a_A SLIT protein; signaling 98.6 2.9E-07 1E-11 77.1 10.7 87 227-325 50-136 (192)
125 2ell_A Acidic leucine-rich nuc 98.6 1.1E-07 3.6E-12 77.8 7.3 117 176-308 47-165 (168)
126 2wfh_A SLIT homolog 2 protein 98.5 3.8E-07 1.3E-11 76.5 9.7 80 180-267 33-112 (193)
127 2je0_A Acidic leucine-rich nuc 98.5 2.4E-07 8.1E-12 74.1 6.6 37 227-265 109-148 (149)
128 2wfh_A SLIT homolog 2 protein 98.4 6.3E-07 2.1E-11 75.2 8.9 107 201-326 31-137 (193)
129 3e4g_A ATP synthase subunit S, 98.4 9.3E-08 3.2E-12 78.5 3.6 89 202-304 62-154 (176)
130 3e4g_A ATP synthase subunit S, 98.4 4.5E-08 1.6E-12 80.4 1.7 94 231-331 61-155 (176)
131 4fdw_A Leucine rich hypothetic 98.4 5.1E-05 1.8E-09 71.0 21.7 220 25-299 132-355 (401)
132 1a9n_A U2A', U2A'; complex (nu 98.4 5.6E-07 1.9E-11 74.2 6.7 108 179-300 43-151 (176)
133 1w8a_A SLIT protein; signaling 98.3 1.6E-06 5.4E-11 72.6 8.5 88 197-300 50-137 (192)
134 2o6r_A Variable lymphocyte rec 98.3 2.3E-06 7.8E-11 70.4 8.5 87 198-300 49-135 (177)
135 2r9u_A Variable lymphocyte rec 98.2 4.1E-06 1.4E-10 68.9 8.2 83 201-299 33-115 (174)
136 3g39_A Variable lymphocyte rec 98.2 4.1E-06 1.4E-10 68.5 8.0 83 201-299 30-112 (170)
137 4b8c_D Glucose-repressible alc 98.1 3.2E-06 1.1E-10 85.4 7.2 111 195-327 218-328 (727)
138 1ds9_A Outer arm dynein; leuci 98.1 1.9E-07 6.6E-12 78.5 -1.9 60 197-267 44-103 (198)
139 3g39_A Variable lymphocyte rec 98.1 1.5E-05 5.2E-10 65.1 8.7 104 202-326 10-113 (170)
140 2r9u_A Variable lymphocyte rec 98.0 1.9E-05 6.4E-10 64.9 8.9 103 203-326 14-116 (174)
141 4fdw_A Leucine rich hypothetic 98.0 0.0009 3.1E-08 62.5 20.6 110 201-332 248-361 (401)
142 4fs7_A Uncharacterized protein 97.9 0.0015 5.3E-08 60.6 20.6 83 226-323 292-374 (394)
143 1dce_A Protein (RAB geranylger 97.9 2.2E-05 7.4E-10 76.9 7.3 107 201-332 441-549 (567)
144 1ds9_A Outer arm dynein; leuci 97.9 7E-07 2.4E-11 75.0 -2.9 87 196-300 65-151 (198)
145 2ifg_A High affinity nerve gro 97.8 5.2E-05 1.8E-09 69.2 8.5 90 192-299 23-113 (347)
146 4b8c_D Glucose-repressible alc 97.8 2.2E-05 7.5E-10 79.2 6.4 108 136-268 220-327 (727)
147 2ra8_A Uncharacterized protein 97.7 3.8E-05 1.3E-09 70.8 6.0 13 138-150 170-182 (362)
148 2ifg_A High affinity nerve gro 97.7 9.3E-05 3.2E-09 67.5 8.2 84 176-268 29-114 (347)
149 3un9_A NLR family member X1; l 97.4 4.1E-06 1.4E-10 77.7 -5.3 68 198-268 180-250 (372)
150 2ra8_A Uncharacterized protein 97.4 0.00019 6.6E-09 66.0 5.7 136 177-326 171-318 (362)
151 4fs7_A Uncharacterized protein 97.3 0.019 6.5E-07 53.1 18.6 32 288-322 319-350 (394)
152 4h09_A Hypothetical leucine ri 97.2 0.074 2.5E-06 48.6 21.0 104 198-322 237-340 (379)
153 4gt6_A Cell surface protein; l 97.1 0.099 3.4E-06 48.2 21.6 83 227-324 284-366 (394)
154 4gt6_A Cell surface protein; l 97.1 0.039 1.3E-06 50.9 18.3 37 226-265 306-342 (394)
155 3un9_A NLR family member X1; l 96.3 0.00017 5.7E-09 66.7 -4.0 12 140-151 101-112 (372)
156 3rw6_A Nuclear RNA export fact 95.5 0.0032 1.1E-07 55.1 0.7 65 198-268 167-231 (267)
157 3rw6_A Nuclear RNA export fact 94.5 0.035 1.2E-06 48.5 4.6 65 196-266 191-260 (267)
158 1io0_A Tropomodulin; LRR prote 93.8 0.013 4.6E-07 48.1 0.5 70 197-268 89-162 (185)
159 4h09_A Hypothetical leucine ri 93.0 1.6 5.5E-05 39.5 13.3 93 197-309 259-351 (379)
160 1io0_A Tropomodulin; LRR prote 92.5 0.013 4.4E-07 48.2 -1.6 123 195-326 30-162 (185)
161 3rfe_A Platelet glycoprotein I 85.2 1 3.5E-05 34.3 4.5 35 232-268 32-66 (130)
162 3rfe_A Platelet glycoprotein I 79.9 1 3.6E-05 34.2 2.7 36 201-242 31-66 (130)
163 1pgv_A TMD-1, tropomodulin TMD 32.1 8.4 0.00029 31.6 -0.4 69 196-267 65-136 (197)
164 2lz0_A Uncharacterized protein 30.7 44 0.0015 23.7 3.4 38 226-266 15-52 (100)
No 1
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.75 E-value=3.9e-17 Score=150.75 Aligned_cols=154 Identities=17% Similarity=0.180 Sum_probs=87.0
Q ss_pred ccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeE
Q 044144 136 KIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDK 215 (356)
Q Consensus 136 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~ 215 (356)
+..+++|++|+++++. ++.++. ...+..++.+.++.+.-..... +..+++|+.|++.+|+++.
T Consensus 173 ~~~l~~L~~L~l~~n~-l~~~~~---------------~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~ 235 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQ-IEDISP---------------LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITD 235 (347)
T ss_dssp GGGCTTCSEEECTTSC-CCCCGG---------------GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred hccCCCCCEEEccCCc-cccccc---------------ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCC
Confidence 4566778888877753 222221 1133345666665554322222 5567777777777776655
Q ss_pred EcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeee
Q 044144 216 IWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLI 295 (356)
Q Consensus 216 ~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~ 295 (356)
.+. +..+++|+.|++++| .+..+ ..+..+++|+.|++++|. +..+ ..... +++|++|+
T Consensus 236 ------~~~--~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~l~~n~-l~~~---~~~~~------l~~L~~L~ 293 (347)
T 4fmz_A 236 ------LSP--LANLSQLTWLEIGTN-QISDI---NAVKDLTKLKMLNVGSNQ-ISDI---SVLNN------LSQLNSLF 293 (347)
T ss_dssp ------CGG--GTTCTTCCEEECCSS-CCCCC---GGGTTCTTCCEEECCSSC-CCCC---GGGGG------CTTCSEEE
T ss_pred ------Ccc--hhcCCCCCEEECCCC-ccCCC---hhHhcCCCcCEEEccCCc-cCCC---hhhcC------CCCCCEEE
Confidence 222 446677777777765 45554 235566777777777764 4443 12222 66777777
Q ss_pred ccccccceeecCCCCcCCCCcccEEeeccCcCcccc
Q 044144 296 LQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIF 331 (356)
Q Consensus 296 l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l 331 (356)
+.+| .++...... ...+++|+.|++.+|+ ++.+
T Consensus 294 L~~n-~l~~~~~~~-l~~l~~L~~L~L~~n~-l~~~ 326 (347)
T 4fmz_A 294 LNNN-QLGNEDMEV-IGGLTNLTTLFLSQNH-ITDI 326 (347)
T ss_dssp CCSS-CCCGGGHHH-HHTCTTCSEEECCSSS-CCCC
T ss_pred CcCC-cCCCcChhH-hhccccCCEEEccCCc-cccc
Confidence 7776 343332221 1456777777777776 4443
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.73 E-value=8.1e-16 Score=147.12 Aligned_cols=136 Identities=16% Similarity=0.191 Sum_probs=98.3
Q ss_pred cccccceeecCCccc-cccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhc
Q 044144 178 TTYSSSEITLDTSTL-LFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSL 256 (356)
Q Consensus 178 ~~l~~l~i~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l 256 (356)
..++.++++.+.-.. .+..+..+++|+.|++.+|+++.+ .| ..+..+++|+.|+++++ .+..+ +...+..+
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~~-~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l 346 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-----DD-NAFWGLTHLLKLNLSQN-FLGSI-DSRMFENL 346 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-----CT-TTTTTCTTCCEEECCSS-CCCEE-CGGGGTTC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCccccc-----Ch-hHhcCcccCCEEECCCC-ccCCc-ChhHhcCc
Confidence 357777777766433 455577789999999999988774 22 23667899999999885 66666 55677888
Q ss_pred CCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCcccc
Q 044144 257 KHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIF 331 (356)
Q Consensus 257 ~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l 331 (356)
++|++|++++|. +..+. +..... +++|++|++.++ +++.++... +..+++|++|++.+++--...
T Consensus 347 ~~L~~L~Ls~N~-l~~~~-~~~~~~------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~l~~~~ 411 (455)
T 3v47_A 347 DKLEVLDLSYNH-IRALG-DQSFLG------LPNLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTNPWDCSC 411 (455)
T ss_dssp TTCCEEECCSSC-CCEEC-TTTTTT------CTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCBCCCT
T ss_pred ccCCEEECCCCc-ccccC-hhhccc------cccccEEECCCC-ccccCCHhH-hccCCcccEEEccCCCcccCC
Confidence 999999999986 65553 334444 889999999886 788776653 257889999999876643333
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.70 E-value=2.3e-16 Score=144.82 Aligned_cols=58 Identities=7% Similarity=-0.031 Sum_probs=31.9
Q ss_pred cCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccC
Q 044144 28 FSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNC 95 (356)
Q Consensus 28 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c 95 (356)
.++++.|+++++ +++.+ +..++.+++|++|+++++ .+..+|... ..+++|++|+++++
T Consensus 80 ~~~l~~L~L~~n-~l~~l-----p~~l~~l~~L~~L~L~~n-~l~~lp~~~---~~l~~L~~L~Ls~n 137 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQF-----PDQAFRLSHLQHMTIDAA-GLMELPDTM---QQFAGLETLTLARN 137 (328)
T ss_dssp STTCCEEEEESS-CCSSC-----CSCGGGGTTCSEEEEESS-CCCCCCSCG---GGGTTCSEEEEESC
T ss_pred ccceeEEEccCC-Cchhc-----ChhhhhCCCCCEEECCCC-CccchhHHH---hccCCCCEEECCCC
Confidence 356666666665 44433 223445666666666663 344444322 44666666666665
No 4
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.70 E-value=4.9e-16 Score=143.39 Aligned_cols=254 Identities=13% Similarity=0.176 Sum_probs=173.8
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccc
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKV 81 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 81 (356)
+++++.|++.++. +..+ . .+..+++|++|++++| .++.+ .....+++|++|+++++ .++.++ ..
T Consensus 43 l~~L~~L~l~~~~-i~~~-~--~~~~~~~L~~L~l~~n-~i~~~------~~~~~l~~L~~L~L~~n-~i~~~~----~~ 106 (347)
T 4fmz_A 43 LESITKLVVAGEK-VASI-Q--GIEYLTNLEYLNLNGN-QITDI------SPLSNLVKLTNLYIGTN-KITDIS----AL 106 (347)
T ss_dssp HTTCSEEECCSSC-CCCC-T--TGGGCTTCCEEECCSS-CCCCC------GGGTTCTTCCEEECCSS-CCCCCG----GG
T ss_pred cccccEEEEeCCc-cccc-h--hhhhcCCccEEEccCC-ccccc------hhhhcCCcCCEEEccCC-cccCch----HH
Confidence 4577888887753 3332 1 3557889999999888 56544 22677888999998886 566553 13
Q ss_pred cCCCCccEEEEccCCCccccCchhhh--hccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecC
Q 044144 82 ESFNELKIIQAYNCDKLSNIFWLSTV--VNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCRE 159 (356)
Q Consensus 82 ~~l~~L~~L~l~~c~~l~~~~~l~~l--l~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 159 (356)
..+++|++|+++++. +..++.+..+ |+.| .+++|..+..++. +..+++|++|.++++.- .....
T Consensus 107 ~~l~~L~~L~l~~n~-i~~~~~~~~l~~L~~L-~l~~n~~~~~~~~----------~~~l~~L~~L~l~~~~~-~~~~~- 172 (347)
T 4fmz_A 107 QNLTNLRELYLNEDN-ISDISPLANLTKMYSL-NLGANHNLSDLSP----------LSNMTGLNYLTVTESKV-KDVTP- 172 (347)
T ss_dssp TTCTTCSEEECTTSC-CCCCGGGTTCTTCCEE-ECTTCTTCCCCGG----------GTTCTTCCEEECCSSCC-CCCGG-
T ss_pred cCCCcCCEEECcCCc-ccCchhhccCCceeEE-ECCCCCCcccccc----------hhhCCCCcEEEecCCCc-CCchh-
Confidence 568899999998874 4444333333 1444 7777766555543 55678888888887642 22211
Q ss_pred CCCCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeec
Q 044144 160 VKTPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVW 239 (356)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~ 239 (356)
...+..++.++++.+.-..... +..+++|+.|.+.++.++.+ +. +..+++|++|+++
T Consensus 173 --------------~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~------~~--~~~~~~L~~L~l~ 229 (347)
T 4fmz_A 173 --------------IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDI------TP--VANMTRLNSLKIG 229 (347)
T ss_dssp --------------GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC------GG--GGGCTTCCEEECC
T ss_pred --------------hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCC------ch--hhcCCcCCEEEcc
Confidence 1144557888887776443333 67789999999999877662 22 4578999999998
Q ss_pred cCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccE
Q 044144 240 HCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEI 319 (356)
Q Consensus 240 ~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~ 319 (356)
+| .+..+ +. +..+++|++|++++|. +..+ ..... +++|++|++.+| +++.++. ...+++|+.
T Consensus 230 ~n-~l~~~-~~--~~~l~~L~~L~l~~n~-l~~~---~~~~~------l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~ 291 (347)
T 4fmz_A 230 NN-KITDL-SP--LANLSQLTWLEIGTNQ-ISDI---NAVKD------LTKLKMLNVGSN-QISDISV---LNNLSQLNS 291 (347)
T ss_dssp SS-CCCCC-GG--GTTCTTCCEEECCSSC-CCCC---GGGTT------CTTCCEEECCSS-CCCCCGG---GGGCTTCSE
T ss_pred CC-ccCCC-cc--hhcCCCCCEEECCCCc-cCCC---hhHhc------CCCcCEEEccCC-ccCCChh---hcCCCCCCE
Confidence 86 56666 42 6788999999999985 5554 22333 889999999988 6777643 267899999
Q ss_pred EeeccCc
Q 044144 320 FSVFRCD 326 (356)
Q Consensus 320 L~i~~C~ 326 (356)
|++.+|.
T Consensus 292 L~L~~n~ 298 (347)
T 4fmz_A 292 LFLNNNQ 298 (347)
T ss_dssp EECCSSC
T ss_pred EECcCCc
Confidence 9999985
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.68 E-value=8.1e-16 Score=141.15 Aligned_cols=230 Identities=20% Similarity=0.220 Sum_probs=137.9
Q ss_pred CcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccccccccccc
Q 044144 3 NNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVE 82 (356)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 82 (356)
.+++.|++.+.. +..+ +..+..+++|++|+++++ .++.+ +..++.+++|++|+++++ .++.+|... .
T Consensus 81 ~~l~~L~L~~n~-l~~l--p~~l~~l~~L~~L~L~~n-~l~~l-----p~~~~~l~~L~~L~Ls~n-~l~~lp~~l---~ 147 (328)
T 4fcg_A 81 PGRVALELRSVP-LPQF--PDQAFRLSHLQHMTIDAA-GLMEL-----PDTMQQFAGLETLTLARN-PLRALPASI---A 147 (328)
T ss_dssp TTCCEEEEESSC-CSSC--CSCGGGGTTCSEEEEESS-CCCCC-----CSCGGGGTTCSEEEEESC-CCCCCCGGG---G
T ss_pred cceeEEEccCCC-chhc--ChhhhhCCCCCEEECCCC-Cccch-----hHHHhccCCCCEEECCCC-ccccCcHHH---h
Confidence 566777776643 3322 223456778888888777 45443 334566778888888774 455554433 4
Q ss_pred CCCCccEEEEccCCCccccCchhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCC
Q 044144 83 SFNELKIIQAYNCDKLSNIFWLSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKT 162 (356)
Q Consensus 83 ~l~~L~~L~l~~c~~l~~~~~l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 162 (356)
.+++|+.|++++|..+..++. .+ ... .....+..+++|+.|+++++. ++.
T Consensus 148 ~l~~L~~L~L~~n~~~~~~p~------~~---~~~-------------~~~~~~~~l~~L~~L~L~~n~-l~~------- 197 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTELPE------PL---AST-------------DASGEHQGLVNLQSLRLEWTG-IRS------- 197 (328)
T ss_dssp GCTTCCEEEEEEETTCCCCCS------CS---EEE-------------C-CCCEEESTTCCEEEEEEEC-CCC-------
T ss_pred cCcCCCEEECCCCCCccccCh------hH---hhc-------------cchhhhccCCCCCEEECcCCC-cCc-------
Confidence 577788888877766554441 11 000 000012345666676666542 211
Q ss_pred CCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCc
Q 044144 163 PSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCN 242 (356)
Q Consensus 163 ~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~ 242 (356)
++..+..+++|+.|++.+|+++. +|. .+..+++|+.|++++|+
T Consensus 198 ------------------------------lp~~l~~l~~L~~L~L~~N~l~~------l~~-~l~~l~~L~~L~Ls~n~ 240 (328)
T 4fcg_A 198 ------------------------------LPASIANLQNLKSLKIRNSPLSA------LGP-AIHHLPKLEELDLRGCT 240 (328)
T ss_dssp ------------------------------CCGGGGGCTTCCEEEEESSCCCC------CCG-GGGGCTTCCEEECTTCT
T ss_pred ------------------------------chHhhcCCCCCCEEEccCCCCCc------Cch-hhccCCCCCEEECcCCc
Confidence 33345567778888887776665 332 25567778888887776
Q ss_pred CccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEee
Q 044144 243 KLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSV 322 (356)
Q Consensus 243 ~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i 322 (356)
....+ | ..+..+++|+.|++++|.....+ +..... +++|++|++.+|+.+..+|... ..+++|+.+.+
T Consensus 241 ~~~~~-p-~~~~~l~~L~~L~L~~n~~~~~~--p~~~~~------l~~L~~L~L~~n~~~~~iP~~l--~~L~~L~~l~l 308 (328)
T 4fcg_A 241 ALRNY-P-PIFGGRAPLKRLILKDCSNLLTL--PLDIHR------LTQLEKLDLRGCVNLSRLPSLI--AQLPANCIILV 308 (328)
T ss_dssp TCCBC-C-CCTTCCCCCCEEECTTCTTCCBC--CTTGGG------CTTCCEEECTTCTTCCCCCGGG--GGSCTTCEEEC
T ss_pred chhhh-H-HHhcCCCCCCEEECCCCCchhhc--chhhhc------CCCCCEEeCCCCCchhhccHHH--hhccCceEEeC
Confidence 66555 4 34566777888888877755444 233333 6777888887777777777655 56677777665
Q ss_pred cc
Q 044144 323 FR 324 (356)
Q Consensus 323 ~~ 324 (356)
..
T Consensus 309 ~~ 310 (328)
T 4fcg_A 309 PP 310 (328)
T ss_dssp CG
T ss_pred CH
Confidence 53
No 6
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.66 E-value=1.7e-15 Score=145.83 Aligned_cols=84 Identities=17% Similarity=0.137 Sum_probs=55.7
Q ss_pred CcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccccccccccc
Q 044144 3 NNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVE 82 (356)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 82 (356)
++++.|++.+.. +..+ ....+.++++|++|+++++ .++.+ .+..+..+++|++|+++++ .++.++.+.+ .
T Consensus 32 ~~l~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~--~ 101 (477)
T 2id5_A 32 TETRLLDLGKNR-IKTL-NQDEFASFPHLEELELNEN-IVSAV----EPGAFNNLFNLRTLGLRSN-RLKLIPLGVF--T 101 (477)
T ss_dssp TTCSEEECCSSC-CCEE-CTTTTTTCTTCCEEECTTS-CCCEE----CTTTTTTCTTCCEEECCSS-CCCSCCTTSS--T
T ss_pred CCCcEEECCCCc-cceE-CHhHccCCCCCCEEECCCC-ccCEe----ChhhhhCCccCCEEECCCC-cCCccCcccc--c
Confidence 467788887754 3333 3335567888999999887 66655 2235667788888888884 4666643321 3
Q ss_pred CCCCccEEEEccCC
Q 044144 83 SFNELKIIQAYNCD 96 (356)
Q Consensus 83 ~l~~L~~L~l~~c~ 96 (356)
.+++|++|+++++.
T Consensus 102 ~l~~L~~L~Ls~n~ 115 (477)
T 2id5_A 102 GLSNLTKLDISENK 115 (477)
T ss_dssp TCTTCCEEECTTSC
T ss_pred CCCCCCEEECCCCc
Confidence 46888888888764
No 7
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.66 E-value=4.6e-15 Score=142.56 Aligned_cols=81 Identities=21% Similarity=0.227 Sum_probs=44.9
Q ss_pred CCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCC
Q 044144 229 RFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPG 308 (356)
Q Consensus 229 ~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~ 308 (356)
.+++|+.|+++++ ++..+ +. +..+++|+.|++++|. +..+.. . ..+++|+.|++.+| +++.++.
T Consensus 285 ~l~~L~~L~L~~n-~l~~~-~~--~~~l~~L~~L~L~~n~-l~~~~~---~------~~l~~L~~L~l~~n-~l~~~~~- 348 (466)
T 1o6v_A 285 GLTALTNLELNEN-QLEDI-SP--ISNLKNLTYLTLYFNN-ISDISP---V------SSLTKLQRLFFYNN-KVSDVSS- 348 (466)
T ss_dssp TCTTCSEEECCSS-CCSCC-GG--GGGCTTCSEEECCSSC-CSCCGG---G------GGCTTCCEEECCSS-CCCCCGG-
T ss_pred CCCccCeEEcCCC-cccCc-hh--hcCCCCCCEEECcCCc-CCCchh---h------ccCccCCEeECCCC-ccCCchh-
Confidence 4555666666553 34444 21 4455666666666654 333311 1 22667777777766 5555532
Q ss_pred CCcCCCCcccEEeeccCcC
Q 044144 309 MHTSEWPALEIFSVFRCDK 327 (356)
Q Consensus 309 ~~~~~~~~L~~L~i~~C~~ 327 (356)
...+++|+.|++.+|.-
T Consensus 349 --l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 349 --LANLTNINWLSAGHNQI 365 (466)
T ss_dssp --GTTCTTCCEEECCSSCC
T ss_pred --hccCCCCCEEeCCCCcc
Confidence 25677777777777654
No 8
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.66 E-value=3.8e-15 Score=139.77 Aligned_cols=123 Identities=19% Similarity=0.219 Sum_probs=58.6
Q ss_pred cccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCC
Q 044144 180 YSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHL 259 (356)
Q Consensus 180 l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 259 (356)
++.+.++.+.-.. ...+..+++|+.|++.++.++.+ .|. .+..+++|+.|+++++ ++..+ +. ....+++|
T Consensus 228 L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~-----~~~-~~~~l~~L~~L~L~~n-~l~~~-~~-~~~~l~~L 297 (390)
T 3o6n_A 228 LTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKI-----MYH-PFVKMQRLERLYISNN-RLVAL-NL-YGQPIPTL 297 (390)
T ss_dssp CCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEE-----ESG-GGTTCSSCCEEECCSS-CCCEE-EC-SSSCCTTC
T ss_pred ccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCc-----Chh-HccccccCCEEECCCC-cCccc-Cc-ccCCCCCC
Confidence 4444444443211 13344555666666666555442 111 2445556666666553 44444 31 22345566
Q ss_pred CeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 260 QHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 260 ~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
++|++++|. +..+. ..... +++|++|++.++ .++.++. ..+++|+.|++.+++
T Consensus 298 ~~L~L~~n~-l~~~~--~~~~~------l~~L~~L~L~~N-~i~~~~~----~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 298 KVLDLSHNH-LLHVE--RNQPQ------FDRLENLYLDHN-SIVTLKL----STHHTLKNLTLSHND 350 (390)
T ss_dssp CEEECCSSC-CCCCG--GGHHH------HTTCSEEECCSS-CCCCCCC----CTTCCCSEEECCSSC
T ss_pred CEEECCCCc-ceecC--ccccc------cCcCCEEECCCC-ccceeCc----hhhccCCEEEcCCCC
Confidence 666666653 43331 11122 556666666655 3444431 345666666666543
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.65 E-value=1.1e-14 Score=144.26 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=38.1
Q ss_pred cccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcC
Q 044144 178 TTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLK 257 (356)
Q Consensus 178 ~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~ 257 (356)
..++.++++.+.-..++..+..+++|++|++.+|+++.+ +...+..+++|++|+++++.....+ +...+..++
T Consensus 278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~l~ 350 (606)
T 3t6q_A 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENL------CQISASNFPSLTHLSIKGNTKRLEL-GTGCLENLE 350 (606)
T ss_dssp TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBG------GGGCGGGCTTCSEEECCSCSSCCBC-CSSTTTTCT
T ss_pred cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcC------chhhhhccCcCCEEECCCCCccccc-chhhhhccC
Confidence 345555555554444555555556666666666544442 1111334444555555443322222 323334444
Q ss_pred CCCeEEEecC
Q 044144 258 HLQHLEVRFC 267 (356)
Q Consensus 258 ~L~~L~i~~c 267 (356)
+|++|++++|
T Consensus 351 ~L~~L~l~~n 360 (606)
T 3t6q_A 351 NLRELDLSHD 360 (606)
T ss_dssp TCCEEECCSS
T ss_pred cCCEEECCCC
Confidence 4444444444
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.65 E-value=6e-15 Score=146.22 Aligned_cols=262 Identities=14% Similarity=0.085 Sum_probs=132.2
Q ss_pred ccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccC--
Q 044144 25 TEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIF-- 102 (356)
Q Consensus 25 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~-- 102 (356)
...+++|+.|++.++ .++.+ ..+..+++|++|++.++.- ..++ .. .+++|++|+++++..+....
T Consensus 281 ~~~l~~L~~L~l~~~-~~~~l------~~l~~~~~L~~L~l~~n~l-~~lp-~~----~l~~L~~L~l~~n~~~~~~~~~ 347 (606)
T 3vq2_A 281 FHCLANVSAMSLAGV-SIKYL------EDVPKHFKWQSLSIIRCQL-KQFP-TL----DLPFLKSLTLTMNKGSISFKKV 347 (606)
T ss_dssp CGGGTTCSEEEEESC-CCCCC------CCCCTTCCCSEEEEESCCC-SSCC-CC----CCSSCCEEEEESCSSCEECCCC
T ss_pred cccCCCCCEEEecCc-cchhh------hhccccccCCEEEcccccC-cccc-cC----CCCccceeeccCCcCccchhhc
Confidence 456788888888877 44444 2455677888888888653 5554 11 46778888887775444331
Q ss_pred chhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCC------CCC-----CC
Q 044144 103 WLSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSAS------PNR-----PA 171 (356)
Q Consensus 103 ~l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~------~~~-----~~ 171 (356)
.++.+ +.| .++++.- ..+.. ....+..+++|++|+++++. ++.++......... .++ ..
T Consensus 348 ~l~~L-~~L-~ls~n~l-~~~~~------~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 348 ALPSL-SYL-DLSRNAL-SFSGC------CSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp CCTTC-CEE-ECCSSCE-EEEEE------CCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTT
T ss_pred cCCCC-CEE-ECcCCcc-CCCcc------hhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccCh
Confidence 12333 444 4444421 11100 00112345556666665543 33222111000000 000 00
Q ss_pred CccccccccccceeecCCccc-cccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchh
Q 044144 172 SQEESTTTYSSSEITLDTSTL-LFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSA 250 (356)
Q Consensus 172 ~~~~~~~~l~~l~i~~~~~~~-l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~ 250 (356)
.....+..++.++++.+.... .+..+..+++|+.|++.+|+++... +|. .+..+++|+.|++++| ++... +.
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~-~~~~l~~L~~L~Ls~n-~l~~~-~~ 490 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT----LSN-VFANTTNLTFLDLSKC-QLEQI-SW 490 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGE----ECS-CCTTCTTCCEEECTTS-CCCEE-CT
T ss_pred hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcc----hHH-hhccCCCCCEEECCCC-cCCcc-Ch
Confidence 011133445556665555322 3344555666666666666554300 111 2445666777776664 44444 33
Q ss_pred hhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCC-cccEEeeccCcC
Q 044144 251 SMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWP-ALEIFSVFRCDK 327 (356)
Q Consensus 251 ~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~-~L~~L~i~~C~~ 327 (356)
..+..+++|++|++++|. +..+. +..... +++|++|+++++ +++.++... ..++ +|+.+++.+++-
T Consensus 491 ~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~------l~~L~~L~l~~N-~l~~~p~~~--~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHNN-LLFLD-SSHYNQ------LYSLSTLDCSFN-RIETSKGIL--QHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp TTTTTCTTCCEEECCSSC-CSCEE-GGGTTT------CTTCCEEECTTS-CCCCEESCG--GGSCTTCCEEECCSCCC
T ss_pred hhhcccccCCEEECCCCc-CCCcC-HHHccC------CCcCCEEECCCC-cCcccCHhH--hhhcccCcEEEccCCCc
Confidence 455566677777776664 44432 233333 566777777666 466666552 4554 477777766553
No 11
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=9.2e-15 Score=140.78 Aligned_cols=59 Identities=17% Similarity=0.191 Sum_probs=35.3
Q ss_pred CCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccC
Q 044144 29 SQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNC 95 (356)
Q Consensus 29 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c 95 (356)
++++.|+++++ +++.+ ....+..+++|++|+++++ .++.+.... ...+++|++|+++++
T Consensus 32 ~~l~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n-~i~~~~~~~--~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTL----NQDEFASFPHLEELELNEN-IVSAVEPGA--FNNLFNLRTLGLRSN 90 (477)
T ss_dssp TTCSEEECCSS-CCCEE----CTTTTTTCTTCCEEECTTS-CCCEECTTT--TTTCTTCCEEECCSS
T ss_pred CCCcEEECCCC-ccceE----CHhHccCCCCCCEEECCCC-ccCEeChhh--hhCCccCCEEECCCC
Confidence 56777777776 56555 1234556777777777774 444442211 134677777777765
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.65 E-value=6.7e-15 Score=140.69 Aligned_cols=308 Identities=15% Similarity=0.150 Sum_probs=175.1
Q ss_pred CcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccccccccccc
Q 044144 3 NNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVE 82 (356)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 82 (356)
+++++|++++.. +... .+..+.++++|++|+++++.-...+ ....+..+++|++|+++++. +..+... ...
T Consensus 30 ~~l~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i----~~~~~~~l~~L~~L~Ls~n~-l~~~~~~--~~~ 100 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAEL-NETSFSRLQDLQFLKVEQQTPGLVI----RNNTFRGLSSLIILKLDYNQ-FLQLETG--AFN 100 (455)
T ss_dssp TTCCEEECCSSC-CCEE-CTTTTSSCTTCCEEECCCCSTTCEE----CTTTTTTCTTCCEEECTTCT-TCEECTT--TTT
T ss_pred CccCEEEecCCc-cCcC-ChhHhccCccccEEECcCCcccceE----CcccccccccCCEEeCCCCc-cCccChh--hcc
Confidence 467888887764 3343 3345567888999998888433233 12345677888888888854 4444221 124
Q ss_pred CCCCccEEEEccCCCccccC------chhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCccee
Q 044144 83 SFNELKIIQAYNCDKLSNIF------WLSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSF 156 (356)
Q Consensus 83 ~l~~L~~L~l~~c~~l~~~~------~l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 156 (356)
.+++|++|++++|.--...+ .+..+ +.| .++++.--...+. ..+..+++|++|+++++. ++..
T Consensus 101 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L-~~L-~L~~n~l~~~~~~--------~~~~~l~~L~~L~L~~n~-l~~~ 169 (455)
T 3v47_A 101 GLANLEVLTLTQCNLDGAVLSGNFFKPLTSL-EML-VLRDNNIKKIQPA--------SFFLNMRRFHVLDLTFNK-VKSI 169 (455)
T ss_dssp TCTTCCEEECTTSCCBTHHHHSSTTTTCTTC-CEE-ECCSSBCCSCCCC--------GGGGGCTTCCEEECTTCC-BSCC
T ss_pred CcccCCEEeCCCCCCCccccCcccccCcccC-CEE-ECCCCccCccCcc--------cccCCCCcccEEeCCCCc-cccc
Confidence 57888888888874322111 12233 444 4554432111111 013456777777777643 2221
Q ss_pred ecCCCCCCC---------CCCCCCCc------------cccccccccceeecCCccc-cccc------------------
Q 044144 157 CREVKTPSA---------SPNRPASQ------------EESTTTYSSSEITLDTSTL-LFNE------------------ 196 (356)
Q Consensus 157 ~~~~~~~~~---------~~~~~~~~------------~~~~~~l~~l~i~~~~~~~-l~~~------------------ 196 (356)
....+.... ..+..... ......++.++++.+.-.. .+..
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~ 249 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTC
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccc
Confidence 111100000 00000000 0011234445554442110 0000
Q ss_pred -------------------c--ccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhh
Q 044144 197 -------------------K--VALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGS 255 (356)
Q Consensus 197 -------------------~--~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~ 255 (356)
. ...++|+.|++.+++++.+ +|. .+..+++|+.|+++++ .+..+ +...+..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-----~~~-~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~ 321 (455)
T 3v47_A 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFAL-----LKS-VFSHFTDLEQLTLAQN-EINKI-DDNAFWG 321 (455)
T ss_dssp TTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEE-----CTT-TTTTCTTCCEEECTTS-CCCEE-CTTTTTT
T ss_pred cccccccchhhhccCcccccccccccCceEEEecCcccccc-----chh-hcccCCCCCEEECCCC-ccccc-ChhHhcC
Confidence 0 1236788888888877763 222 3678899999999885 66666 5566788
Q ss_pred cCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCcccccccc
Q 044144 256 LKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAADL 335 (356)
Q Consensus 256 l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~ 335 (356)
+++|+.|++++|. +..+. +..... +++|++|++.++ +++.+..... ..+++|++|++.++ +++.+|.+.
T Consensus 322 l~~L~~L~Ls~N~-l~~~~-~~~~~~------l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N-~l~~~~~~~ 390 (455)
T 3v47_A 322 LTHLLKLNLSQNF-LGSID-SRMFEN------LDKLEVLDLSYN-HIRALGDQSF-LGLPNLKELALDTN-QLKSVPDGI 390 (455)
T ss_dssp CTTCCEEECCSSC-CCEEC-GGGGTT------CTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCSCCCTTT
T ss_pred cccCCEEECCCCc-cCCcC-hhHhcC------cccCCEEECCCC-cccccChhhc-cccccccEEECCCC-ccccCCHhH
Confidence 9999999999986 65553 233333 889999999988 6777744332 67899999999996 577777654
Q ss_pred -cCCCCCCCCCCCCC
Q 044144 336 -SQNNENDQLGIPAQ 349 (356)
Q Consensus 336 -~~~~~~~~~~~~~~ 349 (356)
........+.+.++
T Consensus 391 ~~~l~~L~~L~l~~N 405 (455)
T 3v47_A 391 FDRLTSLQKIWLHTN 405 (455)
T ss_dssp TTTCTTCCEEECCSS
T ss_pred hccCCcccEEEccCC
Confidence 22233344445444
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.64 E-value=1.3e-14 Score=143.70 Aligned_cols=164 Identities=12% Similarity=0.103 Sum_probs=76.7
Q ss_pred ccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCC
Q 044144 179 TYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKH 258 (356)
Q Consensus 179 ~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~ 258 (356)
.++.+.++.+.-..++..+..+++|+.|++.+|+++.+ .|...+..+++|+.|++++|. +... ....+..+++
T Consensus 377 ~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~ 449 (606)
T 3vq2_A 377 SLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV-----TEFSAFLSLEKLLYLDISYTN-TKID-FDGIFLGLTS 449 (606)
T ss_dssp CCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEEST-----TTTTTTTTCTTCCEEECTTSC-CEEC-CTTTTTTCTT
T ss_pred cccEeECCCCccccchhhccCCCCCCeeECCCCccCCc-----cChhhhhccccCCEEECcCCC-CCcc-chhhhcCCCC
Confidence 34445554444333334444555566666655544442 111224455555555555542 2222 1133344455
Q ss_pred CCeEEEecCcccceeeccCCCCc------------------CcccccCCccCeeeccccccceeecCCCCcCCCCcccEE
Q 044144 259 LQHLEVRFCEDLQEIISENRADE------------------VIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIF 320 (356)
Q Consensus 259 L~~L~i~~c~~l~~i~~~~~~~~------------------~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L 320 (356)
|++|++++|. +.....+..... ......+++|++|++++| +++.+.... +..+++|+.|
T Consensus 450 L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L 526 (606)
T 3vq2_A 450 LNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSH-YNQLYSLSTL 526 (606)
T ss_dssp CCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCEEGGG-TTTCTTCCEE
T ss_pred CCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC-cCCCcCHHH-ccCCCcCCEE
Confidence 5555555443 211000111111 001122567777777766 444442221 1567778888
Q ss_pred eeccCcCcccccccccCCC-CCCCCCCCCCCCCC
Q 044144 321 SVFRCDKLKIFAADLSQNN-ENDQLGIPAQQPPC 353 (356)
Q Consensus 321 ~i~~C~~l~~l~~~~~~~~-~~~~~~~~~~~~~~ 353 (356)
++++|. ++.+|.+..... ....+.+.+++-.|
T Consensus 527 ~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 527 DCSFNR-IETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp ECTTSC-CCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred ECCCCc-CcccCHhHhhhcccCcEEEccCCCccc
Confidence 888775 777776543322 24455555554433
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.64 E-value=9.4e-15 Score=140.43 Aligned_cols=131 Identities=15% Similarity=0.188 Sum_probs=94.5
Q ss_pred cccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhh
Q 044144 176 STTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGS 255 (356)
Q Consensus 176 ~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~ 255 (356)
.+..++.+.++.+.-...+. +..+++|+.|++.+|+++. .+. +..+++|+.|++++| ++....+ +..
T Consensus 263 ~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~------~~~--~~~l~~L~~L~L~~n-~l~~~~~---~~~ 329 (466)
T 1o6v_A 263 GLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLED------ISP--ISNLKNLTYLTLYFN-NISDISP---VSS 329 (466)
T ss_dssp TCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSC------CGG--GGGCTTCSEEECCSS-CCSCCGG---GGG
T ss_pred cCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccC------chh--hcCCCCCCEEECcCC-cCCCchh---hcc
Confidence 44557777777665433333 6678888888888887766 222 557899999999987 5666623 578
Q ss_pred cCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCccccccc
Q 044144 256 LKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAAD 334 (356)
Q Consensus 256 l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~ 334 (356)
+++|+.|++++|. +..+ ..... +++|+.|++.+| .+..+.. ...+++|+.|++.+|+ ++.+|..
T Consensus 330 l~~L~~L~l~~n~-l~~~---~~l~~------l~~L~~L~l~~n-~l~~~~~---~~~l~~L~~L~l~~n~-~~~~p~~ 393 (466)
T 1o6v_A 330 LTKLQRLFFYNNK-VSDV---SSLAN------LTNINWLSAGHN-QISDLTP---LANLTRITQLGLNDQA-WTNAPVN 393 (466)
T ss_dssp CTTCCEEECCSSC-CCCC---GGGTT------CTTCCEEECCSS-CCCBCGG---GTTCTTCCEEECCCEE-EECCCBC
T ss_pred CccCCEeECCCCc-cCCc---hhhcc------CCCCCEEeCCCC-ccCccch---hhcCCCCCEEeccCCc-ccCCchh
Confidence 8999999999985 6554 23333 889999999988 5666554 2688999999999975 5555533
No 15
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.64 E-value=1.6e-14 Score=137.74 Aligned_cols=222 Identities=22% Similarity=0.256 Sum_probs=119.1
Q ss_pred CCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCc--h--
Q 044144 29 SQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFW--L-- 104 (356)
Q Consensus 29 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--l-- 104 (356)
++++.|+++++ +++.+ ....+..+++|++|+++++ .++.++.+. ...+++|++|+++++ +++.++. +
T Consensus 64 ~~l~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 134 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQII----KVNSFKHLRHLEILQLSRN-HIRTIEIGA--FNGLANLNTLELFDN-RLTTIPNGAFVY 134 (440)
T ss_dssp TTCSEEECCSC-CCCEE----CTTTTSSCSSCCEEECCSS-CCCEECGGG--GTTCSSCCEEECCSS-CCSSCCTTTSCS
T ss_pred CCCcEEEccCC-cCCee----CHHHhhCCCCCCEEECCCC-cCCccChhh--ccCCccCCEEECCCC-cCCeeCHhHhhc
Confidence 56777777776 56655 1234566777777777774 355543222 134677777777775 4443332 1
Q ss_pred -hhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccc
Q 044144 105 -STVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSS 183 (356)
Q Consensus 105 -~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 183 (356)
..+ +.| .++++. +..++ ...+..+++|++|++.++..+..++...
T Consensus 135 l~~L-~~L-~L~~N~-i~~~~--------~~~~~~l~~L~~L~l~~~~~l~~i~~~~----------------------- 180 (440)
T 3zyj_A 135 LSKL-KEL-WLRNNP-IESIP--------SYAFNRIPSLRRLDLGELKRLSYISEGA----------------------- 180 (440)
T ss_dssp CSSC-CEE-ECCSCC-CCEEC--------TTTTTTCTTCCEEECCCCTTCCEECTTT-----------------------
T ss_pred cccC-cee-eCCCCc-ccccC--------HHHhhhCcccCEeCCCCCCCcceeCcch-----------------------
Confidence 122 222 333332 11111 1123456777777777766665544322
Q ss_pred eeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEE
Q 044144 184 EITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLE 263 (356)
Q Consensus 184 ~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~ 263 (356)
+..+++|+.|++.+|+++. +|. +..+++|+.|+++++ .+..+ +...+..+++|+.|+
T Consensus 181 -------------~~~l~~L~~L~L~~n~l~~------~~~--~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 181 -------------FEGLSNLRYLNLAMCNLRE------IPN--LTPLIKLDELDLSGN-HLSAI-RPGSFQGLMHLQKLW 237 (440)
T ss_dssp -------------TTTCSSCCEEECTTSCCSS------CCC--CTTCSSCCEEECTTS-CCCEE-CTTTTTTCTTCCEEE
T ss_pred -------------hhcccccCeecCCCCcCcc------ccc--cCCCcccCEEECCCC-ccCcc-ChhhhccCccCCEEE
Confidence 2345666666666665554 332 445566666666654 55555 335555666666666
Q ss_pred EecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 264 VRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 264 i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
++++. +..+. +..... +++|++|++.++ +++.++.... ..+++|+.|++.++|
T Consensus 238 L~~n~-l~~~~-~~~~~~------l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 238 MIQSQ-IQVIE-RNAFDN------LQSLVEINLAHN-NLTLLPHDLF-TPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTCC-CCEEC-TTSSTT------CTTCCEEECTTS-CCCCCCTTTT-SSCTTCCEEECCSSC
T ss_pred CCCCc-eeEEC-hhhhcC------CCCCCEEECCCC-CCCccChhHh-ccccCCCEEEcCCCC
Confidence 66654 44442 222222 566666666665 5555554331 345666666665554
No 16
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.63 E-value=2e-14 Score=137.66 Aligned_cols=222 Identities=19% Similarity=0.186 Sum_probs=122.6
Q ss_pred CCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCc-----
Q 044144 29 SQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFW----- 103 (356)
Q Consensus 29 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~----- 103 (356)
+++++|+++++ +++.+ ....+..+++|++|+++++ .++.++... ...+++|++|+++++. +..++.
T Consensus 75 ~~l~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 145 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMI----QADTFRHLHHLEVLQLGRN-SIRQIEVGA--FNGLASLNTLELFDNW-LTVIPSGAFEY 145 (452)
T ss_dssp TTCSEEECCSS-CCCEE----CTTTTTTCTTCCEEECCSS-CCCEECTTT--TTTCTTCCEEECCSSC-CSBCCTTTSSS
T ss_pred CCccEEECcCC-cCceE----CHHHcCCCCCCCEEECCCC-ccCCcChhh--ccCcccCCEEECCCCc-CCccChhhhcc
Confidence 56788888777 56555 1234566777888887774 455553222 1346778888887753 443322
Q ss_pred hhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccc
Q 044144 104 LSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSS 183 (356)
Q Consensus 104 l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 183 (356)
++.+ +.| .++++. +..++. ..+..+++|+.|+++++..++.++...
T Consensus 146 l~~L-~~L-~L~~N~-l~~~~~--------~~~~~l~~L~~L~l~~~~~l~~i~~~~----------------------- 191 (452)
T 3zyi_A 146 LSKL-REL-WLRNNP-IESIPS--------YAFNRVPSLMRLDLGELKKLEYISEGA----------------------- 191 (452)
T ss_dssp CTTC-CEE-ECCSCC-CCEECT--------TTTTTCTTCCEEECCCCTTCCEECTTT-----------------------
T ss_pred cCCC-CEE-ECCCCC-cceeCH--------hHHhcCCcccEEeCCCCCCccccChhh-----------------------
Confidence 1222 333 444332 222221 123456777777777776666554322
Q ss_pred eeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEE
Q 044144 184 EITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLE 263 (356)
Q Consensus 184 ~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~ 263 (356)
+..+++|+.|++.+|+++. +|. +..+++|+.|+++++ .+..+ +...+..+++|+.|+
T Consensus 192 -------------~~~l~~L~~L~L~~n~l~~------~~~--~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 192 -------------FEGLFNLKYLNLGMCNIKD------MPN--LTPLVGLEELEMSGN-HFPEI-RPGSFHGLSSLKKLW 248 (452)
T ss_dssp -------------TTTCTTCCEEECTTSCCSS------CCC--CTTCTTCCEEECTTS-CCSEE-CGGGGTTCTTCCEEE
T ss_pred -------------ccCCCCCCEEECCCCcccc------ccc--ccccccccEEECcCC-cCccc-CcccccCccCCCEEE
Confidence 2345666666666665554 232 445666666666653 45555 335556666667776
Q ss_pred EecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 264 VRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 264 i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
++++. +..+. +..... +++|++|++.++ +++.++.... ..+++|+.|++.++|
T Consensus 249 L~~n~-l~~~~-~~~~~~------l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 249 VMNSQ-VSLIE-RNAFDG------LASLVELNLAHN-NLSSLPHDLF-TPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTSC-CCEEC-TTTTTT------CTTCCEEECCSS-CCSCCCTTSS-TTCTTCCEEECCSSC
T ss_pred eCCCc-CceEC-HHHhcC------CCCCCEEECCCC-cCCccChHHh-ccccCCCEEEccCCC
Confidence 66654 44442 222232 566666666665 5555554332 446666666666654
No 17
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.63 E-value=7.5e-15 Score=149.67 Aligned_cols=173 Identities=13% Similarity=0.008 Sum_probs=113.9
Q ss_pred ccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceeecCCc-cccccccccCCCcCeEEecceeee
Q 044144 136 KIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEITLDTS-TLLFNEKVALPNLEALEISAINVD 214 (356)
Q Consensus 136 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~-~~l~~~~~~l~~L~~L~l~~~~l~ 214 (356)
+..+++|+.|+++++.-...++.. .+.+..++.|+++.+.- ...+..+..+++|+.|++.+|.++
T Consensus 486 l~~l~~L~~L~L~~N~l~~~~p~~--------------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 486 LSNCTNLNWISLSNNRLTGEIPKW--------------IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGG--------------GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred HhcCCCCCEEEccCCccCCcCChH--------------HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 445666777777665432222221 12455688888888874 357777888999999999988665
Q ss_pred EEcccC-----------------------------------------------------------------CCCCCCCCC
Q 044144 215 KIWHYN-----------------------------------------------------------------QIPAAVFPR 229 (356)
Q Consensus 215 ~~~~~~-----------------------------------------------------------------~~p~~~~~~ 229 (356)
...... ..|. .+..
T Consensus 552 g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~-~~~~ 630 (768)
T 3rgz_A 552 GTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP-TFDN 630 (768)
T ss_dssp SBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCC-SCSS
T ss_pred CcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCch-hhhc
Confidence 210000 0011 2445
Q ss_pred CcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCC
Q 044144 230 FQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGM 309 (356)
Q Consensus 230 l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~ 309 (356)
+++|+.|+++++ ++....| ..++.+++|+.|+++++. +...+ ++.... +++|+.|+++++.--..+|...
T Consensus 631 l~~L~~LdLs~N-~l~g~ip-~~l~~l~~L~~L~Ls~N~-l~g~i-p~~l~~------L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 631 NGSMMFLDMSYN-MLSGYIP-KEIGSMPYLFILNLGHND-ISGSI-PDEVGD------LRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp SBCCCEEECCSS-CCBSCCC-GGGGGCTTCCEEECCSSC-CCSCC-CGGGGG------CTTCCEEECCSSCCEECCCGGG
T ss_pred cccccEEECcCC-cccccCC-HHHhccccCCEEeCcCCc-cCCCC-ChHHhC------CCCCCEEECCCCcccCcCChHH
Confidence 788999999875 5655425 556889999999999987 54332 344444 8899999999884333555544
Q ss_pred CcCCCCcccEEeeccCcCcccccccc
Q 044144 310 HTSEWPALEIFSVFRCDKLKIFAADL 335 (356)
Q Consensus 310 ~~~~~~~L~~L~i~~C~~l~~l~~~~ 335 (356)
..+++|+.|++++++--..+|.++
T Consensus 701 --~~l~~L~~L~ls~N~l~g~iP~~~ 724 (768)
T 3rgz_A 701 --SALTMLTEIDLSNNNLSGPIPEMG 724 (768)
T ss_dssp --GGCCCCSEEECCSSEEEEECCSSS
T ss_pred --hCCCCCCEEECcCCcccccCCCch
Confidence 678999999999987666666554
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.63 E-value=3.6e-15 Score=148.88 Aligned_cols=131 Identities=11% Similarity=0.037 Sum_probs=75.9
Q ss_pred CCcceEEeeCcccCceee----------------ccccCcc--ccCCCcEEEEecCCCceEeecCCcccccccCccccee
Q 044144 2 INNVECLWLDKLQGIENV----------------LFNLDTE--GFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESL 63 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~----------------~~~~~~~--~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L 63 (356)
+++|++|++.+.. +.+. ..+..++ ++++|++|++++|.-...+ +..++.+++|++|
T Consensus 205 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L 278 (636)
T 4eco_A 205 LTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL-----PTFLKALPEMQLI 278 (636)
T ss_dssp CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC-----CTTTTTCSSCCEE
T ss_pred ccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccC-----hHHHhcCCCCCEE
Confidence 5788999998765 3331 0123444 7999999999998433333 3467788899999
Q ss_pred eccccccccc--ccccccc---ccCCCCccEEEEccCCCccccCc---hhhh--hccccccccccchhhhhcccccccCc
Q 044144 64 ILHNLINMER--IWIDQLK---VESFNELKIIQAYNCDKLSNIFW---LSTV--VNHSSTVVNCSKMKEIFAIGEEVDNS 133 (356)
Q Consensus 64 ~l~~~~~l~~--l~~~~~~---~~~l~~L~~L~l~~c~~l~~~~~---l~~l--l~~L~~i~~c~~L~~l~~~~~~~~~~ 133 (356)
+++++..++. +|..... ...+++|++|+++++. +..++. +..+ |+.| .++++.--..++
T Consensus 279 ~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L-~L~~N~l~g~ip--------- 347 (636)
T 4eco_A 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGML-ECLYNQLEGKLP--------- 347 (636)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEE-ECCSCCCEEECC---------
T ss_pred ECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEE-eCcCCcCccchh---------
Confidence 9998764553 4433211 0124788888888874 335543 2222 1333 454443221222
Q ss_pred ccccccccccEEecCCC
Q 044144 134 IEKIELAQLRYLSLGNL 150 (356)
Q Consensus 134 ~~~~~~~~L~~L~l~~~ 150 (356)
.+..+++|+.|+++++
T Consensus 348 -~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 348 -AFGSEIKLASLNLAYN 363 (636)
T ss_dssp -CCEEEEEESEEECCSS
T ss_pred -hhCCCCCCCEEECCCC
Confidence 2345566666666654
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=1.1e-14 Score=144.33 Aligned_cols=124 Identities=19% Similarity=0.215 Sum_probs=75.1
Q ss_pred ccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCC
Q 044144 179 TYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKH 258 (356)
Q Consensus 179 ~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~ 258 (356)
.++.|.++++.-.. +..+..+++|+.|++++|.++.+ .|. .+..+++|+.|+++++ .+..+ + .....+++
T Consensus 233 ~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~-----~~~-~~~~l~~L~~L~Ls~N-~l~~l-~-~~~~~l~~ 302 (597)
T 3oja_B 233 ELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKI-----MYH-PFVKMQRLERLYISNN-RLVAL-N-LYGQPIPT 302 (597)
T ss_dssp CCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEE-----ESG-GGTTCSSCCEEECTTS-CCCEE-E-CSSSCCTT
T ss_pred CCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCC-----CHH-HhcCccCCCEEECCCC-CCCCC-C-cccccCCC
Confidence 35556655554222 34556677777777777766663 121 2556777777777763 55555 4 22345677
Q ss_pred CCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 259 LQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 259 L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
|+.|++++|. +..+. ..... +++|+.|++.+| .++.++. ..+++|+.|++.+++
T Consensus 303 L~~L~Ls~N~-l~~i~--~~~~~------l~~L~~L~L~~N-~l~~~~~----~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 303 LKVLDLSHNH-LLHVE--RNQPQ------FDRLENLYLDHN-SIVTLKL----STHHTLKNLTLSHND 356 (597)
T ss_dssp CCEEECCSSC-CCCCG--GGHHH------HTTCSEEECCSS-CCCCCCC----CTTCCCSEEECCSSC
T ss_pred CcEEECCCCC-CCccC--ccccc------CCCCCEEECCCC-CCCCcCh----hhcCCCCEEEeeCCC
Confidence 7777777775 44431 22222 677888888776 4555542 456788888887765
No 20
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.62 E-value=8.2e-15 Score=149.39 Aligned_cols=45 Identities=16% Similarity=-0.019 Sum_probs=27.9
Q ss_pred CCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCccccccc
Q 044144 288 FPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAAD 334 (356)
Q Consensus 288 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~ 334 (356)
+++|++|++.+|.--..++... ..+++|+.|++.+|.--..+|..
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~ 437 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTL--SNCSELVSLHLSFNYLSGTIPSS 437 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGG--GGCTTCCEEECCSSEEESCCCGG
T ss_pred cCCccEEECCCCccccccCHHH--hcCCCCCEEECcCCcccCcccHH
Confidence 5678888887773332333333 56788888888887543344443
No 21
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.62 E-value=8.8e-15 Score=140.26 Aligned_cols=81 Identities=15% Similarity=0.166 Sum_probs=53.2
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccc
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKV 81 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 81 (356)
+++|+.|++.+. .+.++ + .++.+++|++|+++++ +++.+ .++.+++|++|+++++. ++.++ .
T Consensus 41 l~~L~~L~Ls~n-~l~~~-~--~l~~l~~L~~L~Ls~n-~l~~~-------~~~~l~~L~~L~Ls~N~-l~~~~-----~ 102 (457)
T 3bz5_A 41 LATLTSLDCHNS-SITDM-T--GIEKLTGLTKLICTSN-NITTL-------DLSQNTNLTYLACDSNK-LTNLD-----V 102 (457)
T ss_dssp HTTCCEEECCSS-CCCCC-T--TGGGCTTCSEEECCSS-CCSCC-------CCTTCTTCSEEECCSSC-CSCCC-----C
T ss_pred cCCCCEEEccCC-CcccC-h--hhcccCCCCEEEccCC-cCCeE-------ccccCCCCCEEECcCCC-Cceee-----c
Confidence 467888888776 33333 2 4567888888888887 45543 25667788888888743 55542 2
Q ss_pred cCCCCccEEEEccCCCcccc
Q 044144 82 ESFNELKIIQAYNCDKLSNI 101 (356)
Q Consensus 82 ~~l~~L~~L~l~~c~~l~~~ 101 (356)
+.+++|++|+++++ ++..+
T Consensus 103 ~~l~~L~~L~L~~N-~l~~l 121 (457)
T 3bz5_A 103 TPLTKLTYLNCDTN-KLTKL 121 (457)
T ss_dssp TTCTTCCEEECCSS-CCSCC
T ss_pred CCCCcCCEEECCCC-cCCee
Confidence 45778888888776 34433
No 22
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.61 E-value=2.1e-15 Score=150.54 Aligned_cols=303 Identities=12% Similarity=0.122 Sum_probs=189.1
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceE--eecCCccccccc------Ccccceeeccccccccc
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFC--IVDSRAMVACDA------FPLLESLILHNLINMER 73 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~~~~~~~------~~~L~~L~l~~~~~l~~ 73 (356)
+++|++|++.++.....+ +..++++++|++|++++|..++. + +..++. +++|++|+++++ .++.
T Consensus 248 l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~Ls~n~~l~~~~l-----p~~~~~L~~~~~l~~L~~L~L~~n-~l~~ 319 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKL--PTFLKALPEMQLINVACNRGISGEQL-----KDDWQALADAPVGEKIQIIYIGYN-NLKT 319 (636)
T ss_dssp CTTCCEEEEECCTTCSSC--CTTTTTCSSCCEEECTTCTTSCHHHH-----HHHHHHHHHSGGGGTCCEEECCSS-CCSS
T ss_pred cCCCCEEEecCCcCCccC--hHHHhcCCCCCEEECcCCCCCccccc-----hHHHHhhhccccCCCCCEEECCCC-cCCc
Confidence 678999999887644433 34566899999999999954542 2 223333 489999999995 4556
Q ss_pred ccc--ccccccCCCCccEEEEccCCCccccCchhhh--hccccccccccchhhhhcccccccCccccccccc-ccEEecC
Q 044144 74 IWI--DQLKVESFNELKIIQAYNCDKLSNIFWLSTV--VNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQ-LRYLSLG 148 (356)
Q Consensus 74 l~~--~~~~~~~l~~L~~L~l~~c~~l~~~~~l~~l--l~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~-L~~L~l~ 148 (356)
+|. .. ..+++|+.|+++++.--..++.+..+ |+.| .++++. +..++. .+..+++ |+.|+++
T Consensus 320 ip~~~~l---~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L-~L~~N~-l~~lp~---------~l~~l~~~L~~L~Ls 385 (636)
T 4eco_A 320 FPVETSL---QKMKKLGMLECLYNQLEGKLPAFGSEIKLASL-NLAYNQ-ITEIPA---------NFCGFTEQVENLSFA 385 (636)
T ss_dssp CCCHHHH---TTCTTCCEEECCSCCCEEECCCCEEEEEESEE-ECCSSE-EEECCT---------TSEEECTTCCEEECC
T ss_pred cCchhhh---ccCCCCCEEeCcCCcCccchhhhCCCCCCCEE-ECCCCc-cccccH---------hhhhhcccCcEEEcc
Confidence 654 33 56899999999987543245433333 1444 565553 223332 2445666 7777777
Q ss_pred CCCCcceeecCCCCCCC--------CCCCCCC----ccc-------cccccccceeecCCccccccccc-cCCCcCeEEe
Q 044144 149 NLPEVTSFCREVKTPSA--------SPNRPAS----QEE-------STTTYSSSEITLDTSTLLFNEKV-ALPNLEALEI 208 (356)
Q Consensus 149 ~~~~l~~~~~~~~~~~~--------~~~~~~~----~~~-------~~~~l~~l~i~~~~~~~l~~~~~-~l~~L~~L~l 208 (356)
++. ++.++........ ..|+... ... ....++.|.++.+.-..++.... .+++|+.|++
T Consensus 386 ~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~L 464 (636)
T 4eco_A 386 HNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464 (636)
T ss_dssp SSC-CSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEEC
T ss_pred CCc-CcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEEC
Confidence 653 3333321110000 0010000 000 23357778887776555555443 4889999999
Q ss_pred cceeeeEEcccCCCCCCCCC-------CCcCccEEeeccCcCccccchhhhh-hhcCCCCeEEEecCcccceeeccCCCC
Q 044144 209 SAINVDKIWHYNQIPAAVFP-------RFQNLTRLIVWHCNKLKYIFSASMI-GSLKHLQHLEVRFCEDLQEIISENRAD 280 (356)
Q Consensus 209 ~~~~l~~~~~~~~~p~~~~~-------~l~~L~~L~i~~c~~l~~l~~~~~~-~~l~~L~~L~i~~c~~l~~i~~~~~~~ 280 (356)
.+|+++. +|...+. .+++|+.|+++++ ++..+ |.... ..+++|++|++++|. +..+ +....
T Consensus 465 s~N~l~~------i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~~~l~~L~~L~Ls~N~-l~~i--p~~~~ 533 (636)
T 4eco_A 465 MGNMLTE------IPKNSLKDENENFKNTYLLTSIDLRFN-KLTKL-SDDFRATTLPYLVGIDLSYNS-FSKF--PTQPL 533 (636)
T ss_dssp CSSCCSB------CCSSSSEETTEECTTGGGCCEEECCSS-CCCBC-CGGGSTTTCTTCCEEECCSSC-CSSC--CCGGG
T ss_pred CCCCCCC------cCHHHhccccccccccCCccEEECcCC-cCCcc-ChhhhhccCCCcCEEECCCCC-CCCc--Chhhh
Confidence 9997775 3332232 2338999999885 67666 65544 488999999999986 5553 33343
Q ss_pred cCcccccCCccCeeeccccc------cceeecCCCCcCCCCcccEEeeccCcCcccccccccCCCCCCCCCCCCC
Q 044144 281 EVIPYFVFPQLTTLILQYLP------KLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAADLSQNNENDQLGIPAQ 349 (356)
Q Consensus 281 ~~~~~~~l~~L~~L~l~~c~------~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~ 349 (356)
. +++|++|+++++. -...++... ..+++|++|++.+|. ++.+|.... .....+.+.++
T Consensus 534 ~------l~~L~~L~Ls~N~~ls~N~l~~~~p~~l--~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 534 N------SSTLKGFGIRNQRDAQGNRTLREWPEGI--TLCPSLTQLQIGSND-IRKVNEKIT--PNISVLDIKDN 597 (636)
T ss_dssp G------CSSCCEEECCSCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSSC-CCBCCSCCC--TTCCEEECCSC
T ss_pred c------CCCCCEEECCCCcccccCcccccChHHH--hcCCCCCEEECCCCc-CCccCHhHh--CcCCEEECcCC
Confidence 3 8999999996543 234455444 678999999999987 488887654 33445555544
No 23
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.61 E-value=3.3e-14 Score=133.38 Aligned_cols=284 Identities=13% Similarity=0.059 Sum_probs=151.4
Q ss_pred CcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccccccccccc
Q 044144 3 NNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVE 82 (356)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 82 (356)
++++.|++.+.. ++.+ +......+++|++|+++++ .++.+ ....+..+++|++|+++++ .+..++... ..
T Consensus 45 ~~l~~l~l~~~~-l~~l-~~~~~~~l~~L~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~ 114 (390)
T 3o6n_A 45 NNQKIVTFKNST-MRKL-PAALLDSFRQVELLNLNDL-QIEEI----DTYAFAYAHTIQKLYMGFN-AIRYLPPHV--FQ 114 (390)
T ss_dssp CCCSEEEEESCE-ESEE-CTHHHHHCCCCSEEECTTS-CCCEE----CTTTTTTCTTCCEEECCSS-CCCCCCTTT--TT
T ss_pred CCceEEEecCCc-hhhC-ChhHhcccccCcEEECCCC-ccccc----ChhhccCCCCcCEEECCCC-CCCcCCHHH--hc
Confidence 556666665542 3332 2222346777777777776 45544 1124556677777777774 344443221 13
Q ss_pred CCCCccEEEEccCCCccccCc-----hhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceee
Q 044144 83 SFNELKIIQAYNCDKLSNIFW-----LSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFC 157 (356)
Q Consensus 83 ~l~~L~~L~l~~c~~l~~~~~-----l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 157 (356)
.+++|++|+++++ ++..++. ++.+ +.| .++++.- ..++ ...+..+++|++|+++++. ++.+.
T Consensus 115 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L-~~L-~L~~n~l-~~~~--------~~~~~~l~~L~~L~l~~n~-l~~~~ 181 (390)
T 3o6n_A 115 NVPLLTVLVLERN-DLSSLPRGIFHNTPKL-TTL-SMSNNNL-ERIE--------DDTFQATTSLQNLQLSSNR-LTHVD 181 (390)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTC-CEE-ECCSSCC-CBCC--------TTTTSSCTTCCEEECCSSC-CSBCC
T ss_pred CCCCCCEEECCCC-ccCcCCHHHhcCCCCC-cEE-ECCCCcc-CccC--------hhhccCCCCCCEEECCCCc-CCccc
Confidence 4677777777765 3333332 1222 333 4444321 1111 1123345666666665532 22221
Q ss_pred cCCCCCCC----CCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCc
Q 044144 158 REVKTPSA----SPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNL 233 (356)
Q Consensus 158 ~~~~~~~~----~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L 233 (356)
....+... ..+.. ........++.+.++.+.-...+. ..+++|+.|++.+++++. .+. +..+++|
T Consensus 182 ~~~l~~L~~L~l~~n~l-~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~------~~~--l~~l~~L 250 (390)
T 3o6n_A 182 LSLIPSLFHANVSYNLL-STLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTD------TAW--LLNYPGL 250 (390)
T ss_dssp GGGCTTCSEEECCSSCC-SEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCC------CGG--GGGCTTC
T ss_pred cccccccceeecccccc-cccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCcc------cHH--HcCCCCc
Confidence 11110000 00000 000011235555555554332322 234677777777776655 222 5567888
Q ss_pred cEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCC
Q 044144 234 TRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSE 313 (356)
Q Consensus 234 ~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~ 313 (356)
+.|+++++ .+... +...+..+++|++|+++++. +..+. ..... +++|++|++.++ +++.++... ..
T Consensus 251 ~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~--~~~~~------l~~L~~L~L~~n-~l~~~~~~~--~~ 316 (390)
T 3o6n_A 251 VEVDLSYN-ELEKI-MYHPFVKMQRLERLYISNNR-LVALN--LYGQP------IPTLKVLDLSHN-HLLHVERNQ--PQ 316 (390)
T ss_dssp SEEECCSS-CCCEE-ESGGGTTCSSCCEEECCSSC-CCEEE--CSSSC------CTTCCEEECCSS-CCCCCGGGH--HH
T ss_pred cEEECCCC-cCCCc-ChhHccccccCCEEECCCCc-CcccC--cccCC------CCCCCEEECCCC-cceecCccc--cc
Confidence 88888775 56665 44566778888888888875 65552 22223 778888888887 677666543 46
Q ss_pred CCcccEEeeccCcCcccccccc
Q 044144 314 WPALEIFSVFRCDKLKIFAADL 335 (356)
Q Consensus 314 ~~~L~~L~i~~C~~l~~l~~~~ 335 (356)
+++|+.|++.+|+ ++.+|...
T Consensus 317 l~~L~~L~L~~N~-i~~~~~~~ 337 (390)
T 3o6n_A 317 FDRLENLYLDHNS-IVTLKLST 337 (390)
T ss_dssp HTTCSEEECCSSC-CCCCCCCT
T ss_pred cCcCCEEECCCCc-cceeCchh
Confidence 7888888888875 66666443
No 24
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=1.7e-14 Score=147.81 Aligned_cols=296 Identities=13% Similarity=0.131 Sum_probs=164.8
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceE--eecCCc-c-cccccCcccceeecccccccccccc-
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFC--IVDSRA-M-VACDAFPLLESLILHNLINMERIWI- 76 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~--l~~~~~-~-~~~~~~~~L~~L~l~~~~~l~~l~~- 76 (356)
+++|+.|++.++.....+ +..++.+++|+.|+++++..++. ++.... . .....+++|+.|+++++ .+..+|.
T Consensus 490 L~~L~~L~Ls~N~l~~~i--P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~ 566 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQL--PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPAS 566 (876)
T ss_dssp CTTCCEEEEESCTTCCSC--CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCH
T ss_pred CCCCCEEECcCCCCCccC--hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCCh
Confidence 577888888877544433 24456888999999988853542 211000 0 02234568888888884 4556654
Q ss_pred -ccccccCCCCccEEEEccCCCccccCchhhh--hccccccccccchhhhhcccccccCccccccccc-ccEEecCCCCC
Q 044144 77 -DQLKVESFNELKIIQAYNCDKLSNIFWLSTV--VNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQ-LRYLSLGNLPE 152 (356)
Q Consensus 77 -~~~~~~~l~~L~~L~l~~c~~l~~~~~l~~l--l~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~ 152 (356)
.. ..+++|+.|+++++. +..++.+..+ |+.| .++++. +..++. .+..+++ |+.|.++++.
T Consensus 567 ~~l---~~L~~L~~L~Ls~N~-l~~lp~~~~L~~L~~L-~Ls~N~-l~~lp~---------~l~~l~~~L~~L~Ls~N~- 630 (876)
T 4ecn_A 567 ASL---QKMVKLGLLDCVHNK-VRHLEAFGTNVKLTDL-KLDYNQ-IEEIPE---------DFCAFTDQVEGLGFSHNK- 630 (876)
T ss_dssp HHH---TTCTTCCEEECTTSC-CCBCCCCCTTSEESEE-ECCSSC-CSCCCT---------TSCEECTTCCEEECCSSC-
T ss_pred hhh---hcCCCCCEEECCCCC-cccchhhcCCCcceEE-ECcCCc-cccchH---------HHhhccccCCEEECcCCC-
Confidence 22 457888888888764 3345433333 1333 555543 223332 2445566 7777777653
Q ss_pred cceeecCCCCCCC--------CCCCCCC-------ccc--cccccccceeecCCccccccccc-cCCCcCeEEecceeee
Q 044144 153 VTSFCREVKTPSA--------SPNRPAS-------QEE--STTTYSSSEITLDTSTLLFNEKV-ALPNLEALEISAINVD 214 (356)
Q Consensus 153 l~~~~~~~~~~~~--------~~~~~~~-------~~~--~~~~l~~l~i~~~~~~~l~~~~~-~l~~L~~L~l~~~~l~ 214 (356)
++.++........ ..|+... ... ....++.|.++.+.-..++.... .+++|+.|++.+|+++
T Consensus 631 L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~ 710 (876)
T 4ecn_A 631 LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT 710 (876)
T ss_dssp CCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS
T ss_pred CCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC
Confidence 3333321110000 0011000 000 12256677777776555555443 6788888888888766
Q ss_pred EEcccCCCCCCCCC-------CCcCccEEeeccCcCccccchhhhh-hhcCCCCeEEEecCcccceeeccCCCCcCcccc
Q 044144 215 KIWHYNQIPAAVFP-------RFQNLTRLIVWHCNKLKYIFSASMI-GSLKHLQHLEVRFCEDLQEIISENRADEVIPYF 286 (356)
Q Consensus 215 ~~~~~~~~p~~~~~-------~l~~L~~L~i~~c~~l~~l~~~~~~-~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~ 286 (356)
. +|...+. ++++|+.|++++| ++..+ |.... ..+++|+.|++++|. +..+ +.....
T Consensus 711 ~------ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~l-p~~l~~~~l~~L~~L~Ls~N~-L~~l--p~~l~~----- 774 (876)
T 4ecn_A 711 S------IPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSL-SDDFRATTLPYLSNMDVSYNC-FSSF--PTQPLN----- 774 (876)
T ss_dssp C------CCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCC-CGGGSTTTCTTCCEEECCSSC-CSSC--CCGGGG-----
T ss_pred c------cChHHhccccccccccCCccEEECCCC-CCccc-hHHhhhccCCCcCEEEeCCCC-CCcc--chhhhc-----
Confidence 5 3322222 3348888888775 66665 54443 377888888888875 5443 233333
Q ss_pred cCCccCeeeccccc-----c-ceeecCCCCcCCCCcccEEeeccCcCccccccccc
Q 044144 287 VFPQLTTLILQYLP-----K-LRCLYPGMHTSEWPALEIFSVFRCDKLKIFAADLS 336 (356)
Q Consensus 287 ~l~~L~~L~l~~c~-----~-L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~ 336 (356)
+++|+.|++++++ + ...++... ..+++|+.|++++|. +..+|....
T Consensus 775 -L~~L~~L~Ls~N~~ls~N~l~~~ip~~l--~~L~~L~~L~Ls~N~-L~~Ip~~l~ 826 (876)
T 4ecn_A 775 -SSQLKAFGIRHQRDAEGNRILRQWPTGI--TTCPSLIQLQIGSND-IRKVDEKLT 826 (876)
T ss_dssp -CTTCCEEECCCCBCTTCCBCCCCCCTTG--GGCSSCCEEECCSSC-CCBCCSCCC
T ss_pred -CCCCCEEECCCCCCcccccccccChHHH--hcCCCCCEEECCCCC-CCccCHhhc
Confidence 6777777776633 2 22333333 457777777777765 477776543
No 25
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.59 E-value=1.3e-13 Score=136.71 Aligned_cols=272 Identities=15% Similarity=0.104 Sum_probs=129.0
Q ss_pred cceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccC
Q 044144 4 NVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVES 83 (356)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 83 (356)
+++.|++.+.. +..+ ....+..+++|++|+++++ .++.+ +..+..+++|++|++.++. ++.++.. ....
T Consensus 255 ~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~~l-----p~~l~~l~~L~~L~l~~n~-l~~~~~~--~~~~ 323 (606)
T 3t6q_A 255 SVESINLQKHY-FFNI-SSNTFHCFSGLQELDLTAT-HLSEL-----PSGLVGLSTLKKLVLSANK-FENLCQI--SASN 323 (606)
T ss_dssp EEEEEECTTCC-CSSC-CTTTTTTCTTCSEEECTTS-CCSCC-----CSSCCSCTTCCEEECTTCC-CSBGGGG--CGGG
T ss_pred ceeEEEeecCc-cCcc-CHHHhccccCCCEEeccCC-ccCCC-----ChhhcccccCCEEECccCC-cCcCchh--hhhc
Confidence 44555555442 2222 2223445667777777666 44433 2234556677777776643 3333211 1134
Q ss_pred CCCccEEEEccCCCccccCc-----hhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeec
Q 044144 84 FNELKIIQAYNCDKLSNIFW-----LSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCR 158 (356)
Q Consensus 84 l~~L~~L~l~~c~~l~~~~~-----l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 158 (356)
+++|++|+++++.....++. ++.+ +.| .++++.--. +. .....+..+++|++|+++++. +.....
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L-~~L-~l~~n~l~~-~~------~~~~~~~~l~~L~~L~l~~n~-l~~~~~ 393 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENL-REL-DLSHDDIET-SD------CCNLQLRNLSHLQSLNLSYNE-PLSLKT 393 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTC-CEE-ECCSSCCCE-EE------ESTTTTTTCTTCCEEECCSCS-CEEECT
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcC-CEE-ECCCCcccc-cc------CcchhcccCCCCCEEECCCCc-CCcCCH
Confidence 66777777766643322221 1222 333 333332111 00 001123455666666666643 222221
Q ss_pred CCCCCCCCCCCCCCccccccccccceeecCCcccc--ccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEE
Q 044144 159 EVKTPSASPNRPASQEESTTTYSSSEITLDTSTLL--FNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRL 236 (356)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l--~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L 236 (356)
..+ ..+..++.+.++.+..... ...+..+++|+.|++.+|.++. .+...+..+++|+.|
T Consensus 394 ~~~-------------~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L 454 (606)
T 3t6q_A 394 EAF-------------KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDI------SSEQLFDGLPALQHL 454 (606)
T ss_dssp TTT-------------TTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBT------TCTTTTTTCTTCCEE
T ss_pred HHh-------------cCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCC------cCHHHHhCCCCCCEE
Confidence 111 0233455666655543221 1224556666777766665544 111134556667777
Q ss_pred eeccCcCccccc-hhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCC
Q 044144 237 IVWHCNKLKYIF-SASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWP 315 (356)
Q Consensus 237 ~i~~c~~l~~l~-~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~ 315 (356)
+++++.--...+ ....+..+++|+.|++++|. +..+. +..... +++|++|+++++ +++....... ..++
T Consensus 455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~------l~~L~~L~Ls~N-~l~~~~~~~l-~~l~ 524 (606)
T 3t6q_A 455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSSID-QHAFTS------LKMMNHVDLSHN-RLTSSSIEAL-SHLK 524 (606)
T ss_dssp ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCEEC-TTTTTT------CTTCCEEECCSS-CCCGGGGGGG-TTCC
T ss_pred ECCCCCCCccccccchhhccCCCccEEECCCCc-cCccC-hhhhcc------ccCCCEEECCCC-ccCcCChhHh-Cccc
Confidence 776653222111 11345566677777777664 44442 222333 666777777666 4444332221 4556
Q ss_pred cccEEeeccCc
Q 044144 316 ALEIFSVFRCD 326 (356)
Q Consensus 316 ~L~~L~i~~C~ 326 (356)
.| .|++.+|.
T Consensus 525 ~L-~L~L~~N~ 534 (606)
T 3t6q_A 525 GI-YLNLASNH 534 (606)
T ss_dssp SC-EEECCSSC
T ss_pred cc-EEECcCCc
Confidence 66 66666654
No 26
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.58 E-value=1.2e-13 Score=126.61 Aligned_cols=247 Identities=17% Similarity=0.144 Sum_probs=139.2
Q ss_pred cCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCc--hh
Q 044144 28 FSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFW--LS 105 (356)
Q Consensus 28 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--l~ 105 (356)
.+.++.|+++++ +++.+ ....+..+++|++|+++++ .++.+.... ...+++|++|+++++. ++.++. ..
T Consensus 51 ~~~l~~L~L~~n-~i~~~----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~Ls~n~-l~~l~~~~~~ 121 (330)
T 1xku_A 51 PPDTALLDLQNN-KITEI----KDGDFKNLKNLHTLILINN-KISKISPGA--FAPLVKLERLYLSKNQ-LKELPEKMPK 121 (330)
T ss_dssp CTTCCEEECCSS-CCCCB----CTTTTTTCTTCCEEECCSS-CCCCBCTTT--TTTCTTCCEEECCSSC-CSBCCSSCCT
T ss_pred CCCCeEEECCCC-cCCEe----ChhhhccCCCCCEEECCCC-cCCeeCHHH--hcCCCCCCEEECCCCc-CCccChhhcc
Confidence 357777777777 45544 1124556777777777774 344442111 1346777777777653 343321 22
Q ss_pred hhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCcccccccccccee
Q 044144 106 TVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEI 185 (356)
Q Consensus 106 ~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i 185 (356)
.+ +.| .++++. +..++. ..+..+++|+.|+++++.- +..... ......+..++.+.+
T Consensus 122 ~L-~~L-~l~~n~-l~~~~~--------~~~~~l~~L~~L~l~~n~l-~~~~~~-----------~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 122 TL-QEL-RVHENE-ITKVRK--------SVFNGLNQMIVVELGTNPL-KSSGIE-----------NGAFQGMKKLSYIRI 178 (330)
T ss_dssp TC-CEE-ECCSSC-CCBBCH--------HHHTTCTTCCEEECCSSCC-CGGGBC-----------TTGGGGCTTCCEEEC
T ss_pred cc-cEE-ECCCCc-ccccCH--------hHhcCCccccEEECCCCcC-CccCcC-----------hhhccCCCCcCEEEC
Confidence 33 444 454442 111110 1134566777777766432 110000 000113344666666
Q ss_pred ecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEe
Q 044144 186 TLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVR 265 (356)
Q Consensus 186 ~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~ 265 (356)
+.+.-..++... +++|+.|++.+|+++.+ +...+..+++|+.|+++++ .+..+ +...+..+++|++|+++
T Consensus 179 ~~n~l~~l~~~~--~~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 179 ADTNITTIPQGL--PPSLTELHLDGNKITKV------DAASLKGLNNLAKLGLSFN-SISAV-DNGSLANTPHLRELHLN 248 (330)
T ss_dssp CSSCCCSCCSSC--CTTCSEEECTTSCCCEE------CTGGGTTCTTCCEEECCSS-CCCEE-CTTTGGGSTTCCEEECC
T ss_pred CCCccccCCccc--cccCCEEECCCCcCCcc------CHHHhcCCCCCCEEECCCC-cCcee-ChhhccCCCCCCEEECC
Confidence 655543343332 27888888888877763 1123567788888888774 56666 44566778888888888
Q ss_pred cCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCc-----CCCCcccEEeeccCc
Q 044144 266 FCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHT-----SEWPALEIFSVFRCD 326 (356)
Q Consensus 266 ~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~-----~~~~~L~~L~i~~C~ 326 (356)
+|. +..+ +..... +++|++|++.++ .++.++..... ...+.++.+++.+.|
T Consensus 249 ~N~-l~~l--p~~l~~------l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 249 NNK-LVKV--PGGLAD------HKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp SSC-CSSC--CTTTTT------CSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCc-CccC--Chhhcc------CCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc
Confidence 875 5544 233333 778888888776 57776554321 124677788887776
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=1e-14 Score=149.45 Aligned_cols=227 Identities=10% Similarity=0.045 Sum_probs=126.7
Q ss_pred CCcceEEeeCcccCceee----------------ccccCcc--ccCCCcEEEEecCCCceEeecCCcccccccCccccee
Q 044144 2 INNVECLWLDKLQGIENV----------------LFNLDTE--GFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESL 63 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~----------------~~~~~~~--~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L 63 (356)
+++|+.|+|.+.. +.+. ..+..++ ++++|++|++++|.-...+ +..++.+++|++|
T Consensus 447 L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i-----P~~l~~L~~L~~L 520 (876)
T 4ecn_A 447 LTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL-----PDFLYDLPELQSL 520 (876)
T ss_dssp CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC-----CGGGGGCSSCCEE
T ss_pred CCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC-----hHHHhCCCCCCEE
Confidence 5788999998765 3330 0122334 8999999999999544433 4567789999999
Q ss_pred eccccccccc--cccccc----cccCCCCccEEEEccCCCccccCc---hhhhhcccc--ccccccchhhhhcccccccC
Q 044144 64 ILHNLINMER--IWIDQL----KVESFNELKIIQAYNCDKLSNIFW---LSTVVNHSS--TVVNCSKMKEIFAIGEEVDN 132 (356)
Q Consensus 64 ~l~~~~~l~~--l~~~~~----~~~~l~~L~~L~l~~c~~l~~~~~---l~~ll~~L~--~i~~c~~L~~l~~~~~~~~~ 132 (356)
+++++..++. +|.... ....+++|+.|+++++. +..++. +..+ ..|+ .++++. +..++
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L-~~L~~L~Ls~N~-l~~lp-------- 589 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKM-VKLGLLDCVHNK-VRHLE-------- 589 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTC-TTCCEEECTTSC-CCBCC--------
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcC-CCCCEEECCCCC-cccch--------
Confidence 9999764553 443221 12346799999999875 345554 3333 3332 555554 22343
Q ss_pred cccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccc-cccceeecCCccccccccccCC--CcCeEEec
Q 044144 133 SIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTT-YSSSEITLDTSTLLFNEKVALP--NLEALEIS 209 (356)
Q Consensus 133 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~i~~~~~~~l~~~~~~l~--~L~~L~l~ 209 (356)
.+..+++|+.|.++++. +..++.... .+.. ++.|.++.+.-..++..+...+ +|+.|++.
T Consensus 590 --~~~~L~~L~~L~Ls~N~-l~~lp~~l~--------------~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls 652 (876)
T 4ecn_A 590 --AFGTNVKLTDLKLDYNQ-IEEIPEDFC--------------AFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652 (876)
T ss_dssp --CCCTTSEESEEECCSSC-CSCCCTTSC--------------EECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECC
T ss_pred --hhcCCCcceEEECcCCc-cccchHHHh--------------hccccCCEEECcCCCCCcCchhhhccccCCCCEEECc
Confidence 25577899999998864 333332211 3344 5666666555334444433332 36666666
Q ss_pred ceeeeEEcccCCCCCCCCC--CCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecC
Q 044144 210 AINVDKIWHYNQIPAAVFP--RFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFC 267 (356)
Q Consensus 210 ~~~l~~~~~~~~~p~~~~~--~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 267 (356)
+|+++... .. ++. .+. ..++|+.|+++++ .+..+ |...+..+++|+.|++++|
T Consensus 653 ~N~l~g~i-p~-l~~-~l~~~~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N 707 (876)
T 4ecn_A 653 YNKIGSEG-RN-ISC-SMDDYKGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSNN 707 (876)
T ss_dssp SSCTTTTS-SS-CSS-CTTTCCCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSC
T ss_pred CCcCCCcc-cc-chh-hhccccCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCC
Confidence 66443210 00 110 011 2235566666543 34444 4444445556666666555
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.58 E-value=2.1e-13 Score=125.08 Aligned_cols=245 Identities=16% Similarity=0.141 Sum_probs=142.2
Q ss_pred cCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCc--hh
Q 044144 28 FSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFW--LS 105 (356)
Q Consensus 28 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--l~ 105 (356)
.++|+.|+++++ .++.+ ....+..+++|++|+++++ .++.+.... ...+++|++|+++++ ++..++. ..
T Consensus 53 ~~~l~~L~l~~n-~i~~~----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~l~~~~~~ 123 (332)
T 2ft3_A 53 SPDTTLLDLQNN-DISEL----RKDDFKGLQHLYALVLVNN-KISKIHEKA--FSPLRKLQKLYISKN-HLVEIPPNLPS 123 (332)
T ss_dssp CTTCCEEECCSS-CCCEE----CTTTTTTCTTCCEEECCSS-CCCEECGGG--STTCTTCCEEECCSS-CCCSCCSSCCT
T ss_pred CCCCeEEECCCC-cCCcc----CHhHhhCCCCCcEEECCCC-ccCccCHhH--hhCcCCCCEEECCCC-cCCccCccccc
Confidence 468888888887 56655 1234667788888888885 355542221 245788888888876 3444432 23
Q ss_pred hhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcce--eecCCCCCCCCCCCCCCccccccccccc
Q 044144 106 TVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTS--FCREVKTPSASPNRPASQEESTTTYSSS 183 (356)
Q Consensus 106 ~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~l 183 (356)
.+ +.| .++++. +..++. ..+..+++|++|+++++.- +. .....+. .+ .++.+
T Consensus 124 ~L-~~L-~l~~n~-i~~~~~--------~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~-------------~l-~L~~L 177 (332)
T 2ft3_A 124 SL-VEL-RIHDNR-IRKVPK--------GVFSGLRNMNCIEMGGNPL-ENSGFEPGAFD-------------GL-KLNYL 177 (332)
T ss_dssp TC-CEE-ECCSSC-CCCCCS--------GGGSSCSSCCEEECCSCCC-BGGGSCTTSSC-------------SC-CCSCC
T ss_pred cC-CEE-ECCCCc-cCccCH--------hHhCCCccCCEEECCCCcc-ccCCCCccccc-------------CC-ccCEE
Confidence 34 555 555543 222221 1244678888888877542 11 1111110 11 36666
Q ss_pred eeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEE
Q 044144 184 EITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLE 263 (356)
Q Consensus 184 ~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~ 263 (356)
.++.+.-..++... +++|+.|++.+++++. .+...+..+++|++|+++++ .+..+ +...+..+++|+.|+
T Consensus 178 ~l~~n~l~~l~~~~--~~~L~~L~l~~n~i~~------~~~~~l~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~ 247 (332)
T 2ft3_A 178 RISEAKLTGIPKDL--PETLNELHLDHNKIQA------IELEDLLRYSKLYRLGLGHN-QIRMI-ENGSLSFLPTLRELH 247 (332)
T ss_dssp BCCSSBCSSCCSSS--CSSCSCCBCCSSCCCC------CCTTSSTTCTTCSCCBCCSS-CCCCC-CTTGGGGCTTCCEEE
T ss_pred ECcCCCCCccCccc--cCCCCEEECCCCcCCc------cCHHHhcCCCCCCEEECCCC-cCCcC-ChhHhhCCCCCCEEE
Confidence 66655533333322 2678888887776665 22223556777888888764 56665 445566777888888
Q ss_pred EecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcC-----CCCcccEEeeccCcC
Q 044144 264 VRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTS-----EWPALEIFSVFRCDK 327 (356)
Q Consensus 264 i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~-----~~~~L~~L~i~~C~~ 327 (356)
+++|. +..+ +..... +++|++|++.++ +++.++...... ..+.|+.+++.+++-
T Consensus 248 L~~N~-l~~l--p~~l~~------l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~ 306 (332)
T 2ft3_A 248 LDNNK-LSRV--PAGLPD------LKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPV 306 (332)
T ss_dssp CCSSC-CCBC--CTTGGG------CTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred CCCCc-Ceec--Chhhhc------CccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcc
Confidence 88775 5444 233333 677888888775 566665543211 145677777777763
No 29
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.58 E-value=3.9e-14 Score=128.99 Aligned_cols=251 Identities=13% Similarity=0.065 Sum_probs=132.0
Q ss_pred CCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccc-ccccccccccCCCCccEEEEccCCCccccCc-h--
Q 044144 29 SQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINME-RIWIDQLKVESFNELKIIQAYNCDKLSNIFW-L-- 104 (356)
Q Consensus 29 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~-l-- 104 (356)
.+++.|+++++ ++.... ..+..+..+++|++|+++++.++. .+|... ..+++|++|+++++.--..++. +
T Consensus 50 ~~l~~L~L~~~-~l~~~~--~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l---~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGL-NLPKPY--PIPSSLANLPYLNFLYIGGINNLVGPIPPAI---AKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECC-CCSSCE--ECCGGGGGCTTCSEEEEEEETTEESCCCGGG---GGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCC-CccCCc--ccChhHhCCCCCCeeeCCCCCcccccCChhH---hcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 45666666665 333100 012345566666666666433443 222222 3466666666666533222221 1
Q ss_pred -hhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCcccccc-cccc
Q 044144 105 -STVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTT-TYSS 182 (356)
Q Consensus 105 -~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 182 (356)
..+ +.| .++++.--..++ ..+..+++|++|+++++.--..++.... .+. .++.
T Consensus 124 l~~L-~~L-~Ls~N~l~~~~p---------~~~~~l~~L~~L~L~~N~l~~~~p~~l~--------------~l~~~L~~ 178 (313)
T 1ogq_A 124 IKTL-VTL-DFSYNALSGTLP---------PSISSLPNLVGITFDGNRISGAIPDSYG--------------SFSKLFTS 178 (313)
T ss_dssp CTTC-CEE-ECCSSEEESCCC---------GGGGGCTTCCEEECCSSCCEEECCGGGG--------------CCCTTCCE
T ss_pred CCCC-CEE-eCCCCccCCcCC---------hHHhcCCCCCeEECcCCcccCcCCHHHh--------------hhhhcCcE
Confidence 122 333 444433221222 1244567777777777542212222111 122 3555
Q ss_pred ceeecCCcc-ccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCe
Q 044144 183 SEITLDTST-LLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQH 261 (356)
Q Consensus 183 l~i~~~~~~-~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~ 261 (356)
+.++.+.-. ..+..+..++ |+.|++.+|+++.. .| ..+..+++|+.|+++++ .+....+ . +..+++|++
T Consensus 179 L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~-----~~-~~~~~l~~L~~L~L~~N-~l~~~~~-~-~~~l~~L~~ 248 (313)
T 1ogq_A 179 MTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD-----AS-VLFGSDKNTQKIHLAKN-SLAFDLG-K-VGLSKNLNG 248 (313)
T ss_dssp EECCSSEEEEECCGGGGGCC-CSEEECCSSEEEEC-----CG-GGCCTTSCCSEEECCSS-EECCBGG-G-CCCCTTCCE
T ss_pred EECcCCeeeccCChHHhCCc-ccEEECcCCcccCc-----CC-HHHhcCCCCCEEECCCC-ceeeecC-c-ccccCCCCE
Confidence 666555432 3444555555 88888888877662 22 23567788888888775 4443323 2 456778888
Q ss_pred EEEecCcccceeeccCCCCcCcccccCCccCeeeccccccce-eecCCCCcCCCCcccEEeeccCcCccccc
Q 044144 262 LEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLR-CLYPGMHTSEWPALEIFSVFRCDKLKIFA 332 (356)
Q Consensus 262 L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~-~~~~~~~~~~~~~L~~L~i~~C~~l~~l~ 332 (356)
|++++|. +...+ +..... +++|++|++.++ +++ .++.. ..+++|+.+++.+++.+...|
T Consensus 249 L~Ls~N~-l~~~~-p~~l~~------l~~L~~L~Ls~N-~l~~~ip~~---~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 249 LDLRNNR-IYGTL-PQGLTQ------LKFLHSLNVSFN-NLCGEIPQG---GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp EECCSSC-CEECC-CGGGGG------CTTCCEEECCSS-EEEEECCCS---TTGGGSCGGGTCSSSEEESTT
T ss_pred EECcCCc-ccCcC-ChHHhc------CcCCCEEECcCC-cccccCCCC---ccccccChHHhcCCCCccCCC
Confidence 8888876 43332 233333 778888888777 444 44443 567777777777777655433
No 30
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.57 E-value=2.5e-13 Score=139.85 Aligned_cols=39 Identities=23% Similarity=0.310 Sum_probs=16.8
Q ss_pred CCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecC
Q 044144 227 FPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFC 267 (356)
Q Consensus 227 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 267 (356)
+..+++|+.|+++++ ++..+ +...+..+++|+.|++++|
T Consensus 286 ~~~l~~L~~L~L~~n-~i~~~-~~~~~~~l~~L~~L~Ls~N 324 (844)
T 3j0a_A 286 FETLKDLKVLNLAYN-KINKI-ADEAFYGLDNLQVLNLSYN 324 (844)
T ss_dssp SSSCCCCCEEEEESC-CCCEE-CTTTTTTCSSCCEEEEESC
T ss_pred hhcCCCCCEEECCCC-cCCCC-ChHHhcCCCCCCEEECCCC
Confidence 334444555554442 33333 2233344444555555444
No 31
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.56 E-value=1.4e-13 Score=135.13 Aligned_cols=140 Identities=19% Similarity=0.244 Sum_probs=82.4
Q ss_pred ccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhc
Q 044144 177 TTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSL 256 (356)
Q Consensus 177 ~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l 256 (356)
+..++.+.++.+.-...+..+..+++|+.|++.+|.++.. .|...+..+++|+.|++++| .+... +...+..+
T Consensus 372 ~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l 444 (570)
T 2z63_A 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM-----SEFSVFLSLRNLIYLDISHT-HTRVA-FNGIFNGL 444 (570)
T ss_dssp CSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESC-----TTSCTTTTCTTCCEEECTTS-CCEEC-CTTTTTTC
T ss_pred cCccCEEECCCCccccccccccccCCCCEEEccCCccccc-----cchhhhhcCCCCCEEeCcCC-ccccc-chhhhhcC
Confidence 3446666766666444444466677777777777766552 22223556777888888776 34444 23455667
Q ss_pred CCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCcccccc
Q 044144 257 KHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAA 333 (356)
Q Consensus 257 ~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~ 333 (356)
++|+.|++.+|.-....+ +..... +++|++|++.+| +++.+..... ..+++|++|++.+| +++.+|.
T Consensus 445 ~~L~~L~l~~n~l~~~~~-p~~~~~------l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~ 511 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFL-PDIFTE------LRNLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMASN-QLKSVPD 511 (570)
T ss_dssp TTCCEEECTTCEEGGGEE-CSCCTT------CTTCCEEECTTS-CCCEECTTTT-TTCTTCCEEECCSS-CCSCCCT
T ss_pred CcCcEEECcCCcCccccc-hhhhhc------ccCCCEEECCCC-ccccCChhhh-hcccCCCEEeCCCC-cCCCCCH
Confidence 777888777775221111 233333 667777777766 4555533221 45677777777776 3555543
No 32
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.56 E-value=4.2e-14 Score=130.88 Aligned_cols=237 Identities=18% Similarity=0.166 Sum_probs=136.8
Q ss_pred cCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCc--hh
Q 044144 28 FSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFW--LS 105 (356)
Q Consensus 28 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--l~ 105 (356)
.++|++|+++++ +++.+. ...+..+++|++|+++++ .++.++... ...+++|++|+++++ ++..++. +.
T Consensus 51 ~~~L~~L~l~~n-~i~~~~----~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 121 (353)
T 2z80_A 51 TEAVKSLDLSNN-RITYIS----NSDLQRCVNLQALVLTSN-GINTIEEDS--FSSLGSLEHLDLSYN-YLSNLSSSWFK 121 (353)
T ss_dssp CTTCCEEECTTS-CCCEEC----TTTTTTCTTCCEEECTTS-CCCEECTTT--TTTCTTCCEEECCSS-CCSSCCHHHHT
T ss_pred cccCcEEECCCC-cCcccC----HHHhccCCCCCEEECCCC-ccCccCHhh--cCCCCCCCEEECCCC-cCCcCCHhHhC
Confidence 458899999888 576651 224667888999998885 566553321 245788999998876 3333321 11
Q ss_pred hh--hccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccc
Q 044144 106 TV--VNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSS 183 (356)
Q Consensus 106 ~l--l~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 183 (356)
.+ |+.| .++++. +..++. ...+..+++|++|+++++..++.+.
T Consensus 122 ~l~~L~~L-~L~~n~-l~~l~~-------~~~~~~l~~L~~L~l~~n~~~~~~~-------------------------- 166 (353)
T 2z80_A 122 PLSSLTFL-NLLGNP-YKTLGE-------TSLFSHLTKLQILRVGNMDTFTKIQ-------------------------- 166 (353)
T ss_dssp TCTTCSEE-ECTTCC-CSSSCS-------SCSCTTCTTCCEEEEEESSSCCEEC--------------------------
T ss_pred CCccCCEE-ECCCCC-CcccCc-------hhhhccCCCCcEEECCCCccccccC--------------------------
Confidence 11 0222 222221 111110 0012234445555554443332221
Q ss_pred eeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEE
Q 044144 184 EITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLE 263 (356)
Q Consensus 184 ~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~ 263 (356)
+..+..+++|+.|++.+|+++.+ .|. .+..+++|++|+++++ .+..+ +......+++|+.|+
T Consensus 167 ----------~~~~~~l~~L~~L~l~~n~l~~~-----~~~-~l~~l~~L~~L~l~~n-~l~~~-~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 167 ----------RKDFAGLTFLEELEIDASDLQSY-----EPK-SLKSIQNVSHLILHMK-QHILL-LEIFVDVTSSVECLE 228 (353)
T ss_dssp ----------TTTTTTCCEEEEEEEEETTCCEE-----CTT-TTTTCSEEEEEEEECS-CSTTH-HHHHHHHTTTEEEEE
T ss_pred ----------HHHccCCCCCCEEECCCCCcCcc-----CHH-HHhccccCCeecCCCC-ccccc-hhhhhhhcccccEEE
Confidence 23345678888888888877663 222 3667788888888775 45665 656666778888888
Q ss_pred EecCcccceeeccCCCCc-------------------------CcccccCCccCeeeccccccceeecCCCCcCCCCccc
Q 044144 264 VRFCEDLQEIISENRADE-------------------------VIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALE 318 (356)
Q Consensus 264 i~~c~~l~~i~~~~~~~~-------------------------~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~ 318 (356)
++++. +..+.. ..... ......+++|++|+++++ +++.++... +..+++|+
T Consensus 229 L~~n~-l~~~~~-~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~-~~~l~~L~ 304 (353)
T 2z80_A 229 LRDTD-LDTFHF-SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGI-FDRLTSLQ 304 (353)
T ss_dssp EESCB-CTTCCC-C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTT-TTTCTTCC
T ss_pred CCCCc-cccccc-cccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHH-HhcCCCCC
Confidence 88875 433210 00000 001234778999999887 777776643 25688999
Q ss_pred EEeeccCcCccc
Q 044144 319 IFSVFRCDKLKI 330 (356)
Q Consensus 319 ~L~i~~C~~l~~ 330 (356)
+|++.+++-...
T Consensus 305 ~L~L~~N~~~~~ 316 (353)
T 2z80_A 305 KIWLHTNPWDCS 316 (353)
T ss_dssp EEECCSSCBCCC
T ss_pred EEEeeCCCccCc
Confidence 999988864433
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.56 E-value=1.6e-13 Score=137.77 Aligned_cols=90 Identities=16% Similarity=0.189 Sum_probs=49.2
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCC----cccccccCcccceeeccccccccccccc
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSR----AMVACDAFPLLESLILHNLINMERIWID 77 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~----~~~~~~~~~~L~~L~l~~~~~l~~l~~~ 77 (356)
+++|+.|++.+.. +... .+..+.++++|+.|++.++..-..+.... .......+++|++|+++++ .+..++..
T Consensus 271 l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~ 347 (680)
T 1ziw_A 271 LPQLEYFFLEYNN-IQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN-DIPGIKSN 347 (680)
T ss_dssp CTTCCEEECCSCC-BSEE-CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC-CBCCCCTT
T ss_pred cccccEeeCCCCc-cCcc-ChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC-ccCCCChh
Confidence 5678899998764 3333 23345678888888887652111110000 0113455677777777774 34443221
Q ss_pred cccccCCCCccEEEEccCC
Q 044144 78 QLKVESFNELKIIQAYNCD 96 (356)
Q Consensus 78 ~~~~~~l~~L~~L~l~~c~ 96 (356)
. ...+++|++|+++++.
T Consensus 348 ~--~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 348 M--FTGLINLKYLSLSNSF 364 (680)
T ss_dssp T--TTTCTTCCEEECTTCB
T ss_pred H--hccccCCcEEECCCCc
Confidence 1 1346777777777653
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.55 E-value=5.6e-14 Score=134.66 Aligned_cols=226 Identities=13% Similarity=0.118 Sum_probs=118.3
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccc
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKV 81 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 81 (356)
+++|++|++.++. +.++ ..+.+++|++|+++++ .++.+ .++.+++|++|+++++ .++.++ .
T Consensus 63 l~~L~~L~Ls~n~-l~~~----~~~~l~~L~~L~Ls~N-~l~~~-------~~~~l~~L~~L~L~~N-~l~~l~-----~ 123 (457)
T 3bz5_A 63 LTGLTKLICTSNN-ITTL----DLSQNTNLTYLACDSN-KLTNL-------DVTPLTKLTYLNCDTN-KLTKLD-----V 123 (457)
T ss_dssp CTTCSEEECCSSC-CSCC----CCTTCTTCSEEECCSS-CCSCC-------CCTTCTTCCEEECCSS-CCSCCC-----C
T ss_pred cCCCCEEEccCCc-CCeE----ccccCCCCCEEECcCC-CCcee-------ecCCCCcCCEEECCCC-cCCeec-----C
Confidence 5788899998764 3332 2568899999999988 46543 2667889999998885 455553 3
Q ss_pred cCCCCccEEEEccCCCccccC--chhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecC
Q 044144 82 ESFNELKIIQAYNCDKLSNIF--WLSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCRE 159 (356)
Q Consensus 82 ~~l~~L~~L~l~~c~~l~~~~--~l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 159 (356)
..+++|++|+++++. ++.++ .+..+ +.| .++++..+..++ +..+++|+.|+++++ +++.++..
T Consensus 124 ~~l~~L~~L~l~~N~-l~~l~l~~l~~L-~~L-~l~~n~~~~~~~-----------~~~l~~L~~L~ls~n-~l~~l~l~ 188 (457)
T 3bz5_A 124 SQNPLLTYLNCARNT-LTEIDVSHNTQL-TEL-DCHLNKKITKLD-----------VTPQTQLTTLDCSFN-KITELDVS 188 (457)
T ss_dssp TTCTTCCEEECTTSC-CSCCCCTTCTTC-CEE-ECTTCSCCCCCC-----------CTTCTTCCEEECCSS-CCCCCCCT
T ss_pred CCCCcCCEEECCCCc-cceeccccCCcC-CEE-ECCCCCcccccc-----------cccCCcCCEEECCCC-ccceeccc
Confidence 457888888888763 44332 12223 334 555554433332 344566666666654 23332211
Q ss_pred CCCCCC----CCCCCCC-ccccccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCc---
Q 044144 160 VKTPSA----SPNRPAS-QEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQ--- 231 (356)
Q Consensus 160 ~~~~~~----~~~~~~~-~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~--- 231 (356)
..+.-. ..|.... ....+..++.++++.+.-..++ +..+++|+.|++.+++++.+ |...+..+.
T Consensus 189 ~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~------~~~~l~~L~~L~ 260 (457)
T 3bz5_A 189 QNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTEL------DVSTLSKLTTLH 260 (457)
T ss_dssp TCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC------CCTTCTTCCEEE
T ss_pred cCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCc------CHHHCCCCCEEe
Confidence 000000 0000000 0113344555555555433322 45566666666666655542 111111111
Q ss_pred ----CccEEeeccCcCccccchhhhhhhcCCCCeEEEecCccccee
Q 044144 232 ----NLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEI 273 (356)
Q Consensus 232 ----~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i 273 (356)
+|+.|++++|..+..+ | ...+++|+.|++++|..+..+
T Consensus 261 l~~n~L~~L~l~~n~~~~~~-~---~~~l~~L~~L~Ls~n~~l~~l 302 (457)
T 3bz5_A 261 CIQTDLLEIDLTHNTQLIYF-Q---AEGCRKIKELDVTHNTQLYLL 302 (457)
T ss_dssp CTTCCCSCCCCTTCTTCCEE-E---CTTCTTCCCCCCTTCTTCCEE
T ss_pred ccCCCCCEEECCCCccCCcc-c---ccccccCCEEECCCCccccee
Confidence 3344444444444333 3 234567777777777655554
No 35
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.55 E-value=1.2e-13 Score=135.12 Aligned_cols=84 Identities=17% Similarity=0.114 Sum_probs=49.0
Q ss_pred CcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccccccccccc
Q 044144 3 NNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVE 82 (356)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 82 (356)
++++.|++.+.. +... .+..+.++++|++|+++++ .++.+. +..+..+++|++|+++++ .+..++... .+
T Consensus 26 ~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~n-~i~~~~----~~~~~~l~~L~~L~Ls~n-~l~~~~~~~--~~ 95 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYI-GHGDLRACANLQVLILKSS-RINTIE----GDAFYSLGSLEHLDLSDN-HLSSLSSSW--FG 95 (549)
T ss_dssp TTCCEEECCSSC-CCEE-CSSTTSSCTTCCEEECTTS-CCCEEC----TTTTTTCTTCCEEECTTS-CCCSCCHHH--HT
T ss_pred CCccEEECcCCc-cCcc-ChhhhhcCCcccEEECCCC-CcCccC----hhhccccccCCEEECCCC-ccCccCHHH--hc
Confidence 467778887764 3333 2334567788888888777 555541 224556677777777764 344443221 13
Q ss_pred CCCCccEEEEccCC
Q 044144 83 SFNELKIIQAYNCD 96 (356)
Q Consensus 83 ~l~~L~~L~l~~c~ 96 (356)
.+++|++|+++++.
T Consensus 96 ~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 96 PLSSLKYLNLMGNP 109 (549)
T ss_dssp TCTTCCEEECTTCC
T ss_pred cCCCCcEEECCCCc
Confidence 46666666666653
No 36
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.55 E-value=2.2e-13 Score=133.88 Aligned_cols=58 Identities=14% Similarity=0.179 Sum_probs=39.1
Q ss_pred CccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCccccccc-ccCCCCCCCCCCCCCC
Q 044144 289 PQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAAD-LSQNNENDQLGIPAQQ 350 (356)
Q Consensus 289 ~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~-~~~~~~~~~~~~~~~~ 350 (356)
++|++|+++++ +++.++... ..+++|+.|++.++ +++.+|.+ .........+.+.+++
T Consensus 450 ~~L~~L~L~~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 450 PKVKVLDLHNN-RIMSIPKDV--THLQALQELNVASN-QLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp TTCSEEECCSS-CCCCCCTTT--TSSCCCSEEECCSS-CCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CcCCEEECCCC-cCcccChhh--cCCCCCCEEECCCC-CCCCCCHHHHhcCCCCCEEEecCCC
Confidence 57888888777 777777665 47888888888886 47777765 3333334445555554
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.55 E-value=1.4e-13 Score=136.40 Aligned_cols=262 Identities=14% Similarity=0.128 Sum_probs=144.9
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccc
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKV 81 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 81 (356)
+++|+.|++.++. +..+ .+..+..+++|++|++++| .++.+ .+..++.+++|++|+++++ .+..++...+
T Consensus 74 l~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~-- 143 (597)
T 3oja_B 74 FRQVELLNLNDLQ-IEEI-DTYAFAYAHTIQKLYMGFN-AIRYL----PPHVFQNVPLLTVLVLERN-DLSSLPRGIF-- 143 (597)
T ss_dssp CCCCSEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSS-CCCCC----CTTTTTTCTTCCEEECCSS-CCCCCCTTTT--
T ss_pred CCCCcEEECCCCC-CCCC-ChHHhcCCCCCCEEECCCC-cCCCC----CHHHHcCCCCCCEEEeeCC-CCCCCCHHHh--
Confidence 5789999998874 4443 3335678999999999998 56544 2234578899999999995 5666654321
Q ss_pred cCCCCccEEEEccCCCccccCc--h---hhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCccee
Q 044144 82 ESFNELKIIQAYNCDKLSNIFW--L---STVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSF 156 (356)
Q Consensus 82 ~~l~~L~~L~l~~c~~l~~~~~--l---~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 156 (356)
..+++|+.|+++++. +..+++ + ..+ +.| .++++. +..++ ...+++|+.|.++++ .+..+
T Consensus 144 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L-~~L-~L~~N~-l~~~~-----------~~~l~~L~~L~l~~n-~l~~l 207 (597)
T 3oja_B 144 HNTPKLTTLSMSNNN-LERIEDDTFQATTSL-QNL-QLSSNR-LTHVD-----------LSLIPSLFHANVSYN-LLSTL 207 (597)
T ss_dssp TTCTTCCEEECCSSC-CCBCCTTTTTTCTTC-CEE-ECTTSC-CSBCC-----------GGGCTTCSEEECCSS-CCSEE
T ss_pred ccCCCCCEEEeeCCc-CCCCChhhhhcCCcC-cEE-ECcCCC-CCCcC-----------hhhhhhhhhhhcccC-ccccc
Confidence 457999999999874 443332 2 223 444 555442 22111 334566777766653 23322
Q ss_pred ecCCCCCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEE
Q 044144 157 CREVKTPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRL 236 (356)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L 236 (356)
.. ...++.+.++.+.-..++.. ..++|+.|++.+|.++. ++. +..+++|+.|
T Consensus 208 ~~------------------~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~------~~~--l~~l~~L~~L 259 (597)
T 3oja_B 208 AI------------------PIAVEELDASHNSINVVRGP--VNVELTILKLQHNNLTD------TAW--LLNYPGLVEV 259 (597)
T ss_dssp EC------------------CTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSCCCC------CGG--GGGCTTCSEE
T ss_pred cC------------------CchhheeeccCCcccccccc--cCCCCCEEECCCCCCCC------Chh--hccCCCCCEE
Confidence 21 11244455444432222211 12456666666665544 111 3455666666
Q ss_pred eeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCc
Q 044144 237 IVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPA 316 (356)
Q Consensus 237 ~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~ 316 (356)
+++++ .+... +...+..+++|+.|++++|. +..+. ..... +++|+.|++++| .++.++... ..+++
T Consensus 260 ~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l~--~~~~~------l~~L~~L~Ls~N-~l~~i~~~~--~~l~~ 325 (597)
T 3oja_B 260 DLSYN-ELEKI-MYHPFVKMQRLERLYISNNR-LVALN--LYGQP------IPTLKVLDLSHN-HLLHVERNQ--PQFDR 325 (597)
T ss_dssp ECCSS-CCCEE-ESGGGTTCSSCCEEECTTSC-CCEEE--CSSSC------CTTCCEEECCSS-CCCCCGGGH--HHHTT
T ss_pred ECCCC-ccCCC-CHHHhcCccCCCEEECCCCC-CCCCC--ccccc------CCCCcEEECCCC-CCCccCccc--ccCCC
Confidence 66553 44444 23444556666666666654 44431 22222 556666666655 444444332 34556
Q ss_pred ccEEeeccCcCccccc
Q 044144 317 LEIFSVFRCDKLKIFA 332 (356)
Q Consensus 317 L~~L~i~~C~~l~~l~ 332 (356)
|+.|++.+|. +..+|
T Consensus 326 L~~L~L~~N~-l~~~~ 340 (597)
T 3oja_B 326 LENLYLDHNS-IVTLK 340 (597)
T ss_dssp CSEEECCSSC-CCCCC
T ss_pred CCEEECCCCC-CCCcC
Confidence 6666666544 44443
No 38
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.55 E-value=4.3e-13 Score=122.78 Aligned_cols=113 Identities=19% Similarity=0.274 Sum_probs=50.9
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeecc
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISE 276 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~ 276 (356)
+..+++|+.|++.+++++. +|.. .+++|++|+++++ .+..+ +...+..+++|+.|+++++. +..+. +
T Consensus 167 ~~~l~~L~~L~l~~n~l~~------l~~~---~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~-~ 233 (330)
T 1xku_A 167 FQGMKKLSYIRIADTNITT------IPQG---LPPSLTELHLDGN-KITKV-DAASLKGLNNLAKLGLSFNS-ISAVD-N 233 (330)
T ss_dssp GGGCTTCCEEECCSSCCCS------CCSS---CCTTCSEEECTTS-CCCEE-CTGGGTTCTTCCEEECCSSC-CCEEC-T
T ss_pred ccCCCCcCEEECCCCcccc------CCcc---ccccCCEEECCCC-cCCcc-CHHHhcCCCCCCEEECCCCc-CceeC-h
Confidence 4445555555555554443 2221 1145555555543 34443 22344455555555555543 33331 1
Q ss_pred CCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCccccc
Q 044144 277 NRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFA 332 (356)
Q Consensus 277 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~ 332 (356)
..... +++|++|++.++ +++.++... ..+++|++|++.+++ ++.+|
T Consensus 234 ~~~~~------l~~L~~L~L~~N-~l~~lp~~l--~~l~~L~~L~l~~N~-i~~~~ 279 (330)
T 1xku_A 234 GSLAN------TPHLRELHLNNN-KLVKVPGGL--ADHKYIQVVYLHNNN-ISAIG 279 (330)
T ss_dssp TTGGG------STTCCEEECCSS-CCSSCCTTT--TTCSSCCEEECCSSC-CCCCC
T ss_pred hhccC------CCCCCEEECCCC-cCccCChhh--ccCCCcCEEECCCCc-CCccC
Confidence 11222 455555555554 444444432 345555555555543 44443
No 39
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.54 E-value=1.1e-13 Score=134.72 Aligned_cols=140 Identities=16% Similarity=0.167 Sum_probs=67.9
Q ss_pred ccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchh--hhhhhcCCCCeEEEecCcccceeec
Q 044144 198 VALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSA--SMIGSLKHLQHLEVRFCEDLQEIIS 275 (356)
Q Consensus 198 ~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~--~~~~~l~~L~~L~i~~c~~l~~i~~ 275 (356)
..+++|++|++++|+++.. .|. .+..+++|+.|+++++ ++..+ +. ..+..+++|++|++++|. +...++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~-----~~~-~~~~l~~L~~L~L~~N-~l~~l-~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~ 391 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDT-----VFE-NCGHLTELETLILQMN-QLKEL-SKIAEMTTQMKSLQQLDISQNS-VSYDEK 391 (520)
T ss_dssp SSCCCCCEEECCSSCCCTT-----TTT-TCCCCSSCCEEECCSS-CCCBH-HHHHHHHTTCTTCCEEECCSSC-CBCCGG
T ss_pred hhCCcccEEEeECCccChh-----hhh-hhccCCCCCEEEccCC-ccCcc-ccchHHHhhCCCCCEEECCCCc-CCcccc
Confidence 3456666666666655441 111 2445566666666553 33332 11 334455666666666554 322111
Q ss_pred cCCCCc---------------CcccccC-CccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCccccccc-ccCC
Q 044144 276 ENRADE---------------VIPYFVF-PQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAAD-LSQN 338 (356)
Q Consensus 276 ~~~~~~---------------~~~~~~l-~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~-~~~~ 338 (356)
...... ......+ ++|++|++++| +++.++... ..+++|++|++.+| +++.+|.+ ....
T Consensus 392 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~--~~l~~L~~L~L~~N-~l~~l~~~~~~~l 467 (520)
T 2z7x_B 392 KGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQV--VKLEALQELNVASN-QLKSVPDGIFDRL 467 (520)
T ss_dssp GCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGG--GGCTTCCEEECCSS-CCCCCCTTTTTTC
T ss_pred cchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhh--hcCCCCCEEECCCC-cCCccCHHHhccC
Confidence 111111 0000012 46777777666 566555544 46777888888776 46777765 2222
Q ss_pred CCCCCCCCCCCC
Q 044144 339 NENDQLGIPAQQ 350 (356)
Q Consensus 339 ~~~~~~~~~~~~ 350 (356)
.....+.+.+++
T Consensus 468 ~~L~~L~l~~N~ 479 (520)
T 2z7x_B 468 TSLQKIWLHTNP 479 (520)
T ss_dssp TTCCEEECCSSC
T ss_pred CcccEEECcCCC
Confidence 233444444443
No 40
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.54 E-value=2.4e-13 Score=132.25 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=56.7
Q ss_pred CcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccccccccccc
Q 044144 3 NNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVE 82 (356)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 82 (356)
+++++|++.++. +... .+..+.++++|++|+++++ +++.+ .+..+..+++|++|+++++ .++.++..
T Consensus 21 ~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~N-~l~~lp~~----- 87 (520)
T 2z7x_B 21 QKTTILNISQNY-ISEL-WTSDILSLSKLRILIISHN-RIQYL----DISVFKFNQELEYLDLSHN-KLVKISCH----- 87 (520)
T ss_dssp TTCSEEECCSSC-CCCC-CHHHHTTCTTCCEEECCSS-CCCEE----EGGGGTTCTTCCEEECCSS-CCCEEECC-----
T ss_pred ccccEEECCCCc-cccc-ChhhccccccccEEecCCC-ccCCc----ChHHhhcccCCCEEecCCC-ceeecCcc-----
Confidence 467888887764 3332 2224557888999999888 56654 2335677888999998884 56666543
Q ss_pred CCCCccEEEEccCCC
Q 044144 83 SFNELKIIQAYNCDK 97 (356)
Q Consensus 83 ~l~~L~~L~l~~c~~ 97 (356)
.+++|++|+++++.-
T Consensus 88 ~l~~L~~L~L~~N~l 102 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAF 102 (520)
T ss_dssp CCCCCSEEECCSSCC
T ss_pred ccCCccEEeccCCcc
Confidence 478899999988753
No 41
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=1.1e-13 Score=120.86 Aligned_cols=203 Identities=15% Similarity=0.123 Sum_probs=126.5
Q ss_pred CCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCchhhhh
Q 044144 29 SQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFWLSTVV 108 (356)
Q Consensus 29 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~l~~ll 108 (356)
++|++|+++++ +++.+. ......+++|++|++.++..++.++...+ ..+++|++|++++|.+++.++.-
T Consensus 31 ~~l~~L~l~~n-~l~~i~----~~~~~~l~~L~~L~l~~n~~l~~i~~~~f--~~l~~L~~L~l~~~n~l~~i~~~---- 99 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIP----SHAFSNLPNISRIYVSIDVTLQQLESHSF--YNLSKVTHIEIRNTRNLTYIDPD---- 99 (239)
T ss_dssp TTCCEEEEESC-CCSEEC----TTTTTTCTTCCEEEEECCSSCCEECTTTE--ESCTTCCEEEEEEETTCCEECTT----
T ss_pred CcccEEEEeCC-cceEEC----HHHccCCCCCcEEeCCCCCCcceeCHhHc--CCCcCCcEEECCCCCCeeEcCHH----
Confidence 47999999998 677762 22466789999999999655777754322 45789999999987676654310
Q ss_pred ccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceeecC
Q 044144 109 NHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEITLD 188 (356)
Q Consensus 109 ~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~ 188 (356)
.+..+++|++|+++++. ++.++.
T Consensus 100 --------------------------~f~~l~~L~~L~l~~n~-l~~lp~------------------------------ 122 (239)
T 2xwt_C 100 --------------------------ALKELPLLKFLGIFNTG-LKMFPD------------------------------ 122 (239)
T ss_dssp --------------------------SEECCTTCCEEEEEEEC-CCSCCC------------------------------
T ss_pred --------------------------HhCCCCCCCEEeCCCCC-Cccccc------------------------------
Confidence 02234667777776642 222111
Q ss_pred CccccccccccCCCcC---eEEecce-eeeEEcccCCCCCCCCCCCcCcc-EEeeccCcCccccchhhhhhhcCCCCeEE
Q 044144 189 TSTLLFNEKVALPNLE---ALEISAI-NVDKIWHYNQIPAAVFPRFQNLT-RLIVWHCNKLKYIFSASMIGSLKHLQHLE 263 (356)
Q Consensus 189 ~~~~l~~~~~~l~~L~---~L~l~~~-~l~~~~~~~~~p~~~~~~l~~L~-~L~i~~c~~l~~l~~~~~~~~l~~L~~L~ 263 (356)
+..+++|+ .|++.++ +++.+ |...+..+++|+ .|+++++ .++.+ +...+.. ++|+.|+
T Consensus 123 --------~~~l~~L~~L~~L~l~~N~~l~~i------~~~~~~~l~~L~~~L~l~~n-~l~~i-~~~~~~~-~~L~~L~ 185 (239)
T 2xwt_C 123 --------LTKVYSTDIFFILEITDNPYMTSI------PVNAFQGLCNETLTLKLYNN-GFTSV-QGYAFNG-TKLDAVY 185 (239)
T ss_dssp --------CTTCCBCCSEEEEEEESCTTCCEE------CTTTTTTTBSSEEEEECCSC-CCCEE-CTTTTTT-CEEEEEE
T ss_pred --------cccccccccccEEECCCCcchhhc------CcccccchhcceeEEEcCCC-CCccc-CHhhcCC-CCCCEEE
Confidence 12334444 7777777 77763 322356677777 7777663 55555 5444444 6777777
Q ss_pred EecCcccceeeccCCCCcCcccccC-CccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCc
Q 044144 264 VRFCEDLQEIISENRADEVIPYFVF-PQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKL 328 (356)
Q Consensus 264 i~~c~~l~~i~~~~~~~~~~~~~~l-~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l 328 (356)
+.++..++.+. +..... + ++|+.|++.++ +++.++.. .+++|+.|.+.++..+
T Consensus 186 L~~n~~l~~i~-~~~~~~------l~~~L~~L~l~~N-~l~~l~~~----~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 186 LNKNKYLTVID-KDAFGG------VYSGPSLLDVSQT-SVTALPSK----GLEHLKELIARNTWTL 239 (239)
T ss_dssp CTTCTTCCEEC-TTTTTT------CSBCCSEEECTTC-CCCCCCCT----TCTTCSEEECTTC---
T ss_pred cCCCCCcccCC-HHHhhc------cccCCcEEECCCC-ccccCChh----HhccCceeeccCccCC
Confidence 77775565552 222333 5 67777887764 66666553 4677777777777643
No 42
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.53 E-value=1.8e-13 Score=134.35 Aligned_cols=251 Identities=13% Similarity=0.086 Sum_probs=163.7
Q ss_pred CccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccC-
Q 044144 24 DTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIF- 102 (356)
Q Consensus 24 ~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~- 102 (356)
....+++|++|++.++ .++.+ +.....+ +|++|++.++. +..++. ..+++|+.|++.++......+
T Consensus 277 ~~~~l~~L~~L~l~~~-~l~~l-----~~~~~~~-~L~~L~l~~n~-~~~l~~-----~~l~~L~~L~l~~n~~~~~~~~ 343 (570)
T 2z63_A 277 LFNCLTNVSSFSLVSV-TIERV-----KDFSYNF-GWQHLELVNCK-FGQFPT-----LKLKSLKRLTFTSNKGGNAFSE 343 (570)
T ss_dssp TTGGGTTCSEEEEESC-EECSC-----CBCCSCC-CCSEEEEESCB-CSSCCB-----CBCSSCCEEEEESCBSCCBCCC
T ss_pred hhcCcCcccEEEecCc-cchhh-----hhhhccC-CccEEeeccCc-ccccCc-----ccccccCEEeCcCCcccccccc
Confidence 3456788899998887 44433 2334455 88888888864 444433 357889999988876443332
Q ss_pred -chhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccc
Q 044144 103 -WLSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYS 181 (356)
Q Consensus 103 -~l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 181 (356)
.++.+ +.| .++++.-- .+. .....+..+++|++|+++++. +..++.... .+..++
T Consensus 344 ~~~~~L-~~L-~l~~n~l~-~~~------~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~--------------~l~~L~ 399 (570)
T 2z63_A 344 VDLPSL-EFL-DLSRNGLS-FKG------CCSQSDFGTTSLKYLDLSFNG-VITMSSNFL--------------GLEQLE 399 (570)
T ss_dssp CBCTTC-CEE-ECCSSCCB-EEE------EEEHHHHTCSCCCEEECCSCS-EEEEEEEEE--------------TCTTCC
T ss_pred ccCCCC-CEE-eCcCCccC-ccc------cccccccccCccCEEECCCCc-ccccccccc--------------ccCCCC
Confidence 23344 555 55555311 110 001124467889999998864 333332211 334577
Q ss_pred cceeecCCccccc--cccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCC
Q 044144 182 SSEITLDTSTLLF--NEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHL 259 (356)
Q Consensus 182 ~l~i~~~~~~~l~--~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 259 (356)
.+.++++.-.... ..+..+++|+.|++.+|.++.. .| ..+..+++|+.|++++|.-.....| ..+..+++|
T Consensus 400 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~-~~~~~l~~L~~L~l~~n~l~~~~~p-~~~~~l~~L 472 (570)
T 2z63_A 400 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-----FN-GIFNGLSSLEVLKMAGNSFQENFLP-DIFTELRNL 472 (570)
T ss_dssp EEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC-----CT-TTTTTCTTCCEEECTTCEEGGGEEC-SCCTTCTTC
T ss_pred EEEccCCccccccchhhhhcCCCCCEEeCcCCccccc-----ch-hhhhcCCcCcEEECcCCcCccccch-hhhhcccCC
Confidence 7777766533222 3567889999999999977773 22 2467889999999998753322224 566788999
Q ss_pred CeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCc
Q 044144 260 QHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKL 328 (356)
Q Consensus 260 ~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l 328 (356)
+.|++++|. +..+. +..... +++|++|++.+| +++.++.... ..+++|+.|++.+++--
T Consensus 473 ~~L~l~~n~-l~~~~-~~~~~~------l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 473 TFLDLSQCQ-LEQLS-PTAFNS------LSSLQVLNMASN-QLKSVPDGIF-DRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CEEECTTSC-CCEEC-TTTTTT------CTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSCBC
T ss_pred CEEECCCCc-cccCC-hhhhhc------ccCCCEEeCCCC-cCCCCCHHHh-hcccCCcEEEecCCccc
Confidence 999999986 65553 344444 889999999988 7887765432 67899999999987643
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.51 E-value=1e-12 Score=132.02 Aligned_cols=303 Identities=17% Similarity=0.158 Sum_probs=157.7
Q ss_pred CcceEEeeCcccCceeeccccCccccC--CCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccccccccc
Q 044144 3 NNVECLWLDKLQGIENVLFNLDTEGFS--QLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLK 80 (356)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~~~l~--~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 80 (356)
++++.|++.++.. .+. .+..+.+++ +|+.|++++| .++.+ .+..+..+++|++|++.++. +..+....
T Consensus 222 ~~L~~L~L~~n~l-~~~-~~~~~~~l~~~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~L~~n~-l~~~~~~~-- 291 (680)
T 1ziw_A 222 TSIRNLSLSNSQL-STT-SNTTFLGLKWTNLTMLDLSYN-NLNVV----GNDSFAWLPQLEYFFLEYNN-IQHLFSHS-- 291 (680)
T ss_dssp SCCCEEECTTSCC-CEE-CTTTTGGGGGSCCCEEECTTS-CCCEE----CTTTTTTCTTCCEEECCSCC-BSEECTTT--
T ss_pred ccccEEEccCCcc-ccc-ChhHhhccCcCCCCEEECCCC-CcCcc----CcccccCcccccEeeCCCCc-cCccChhh--
Confidence 4566666665532 222 122233443 4888888887 45544 12345667888888888753 44332211
Q ss_pred ccCCCCccEEEEccCCCccccC--chhhhhccccccccccchhhhhccccc--ccCcccccccccccEEecCCCC-Ccce
Q 044144 81 VESFNELKIIQAYNCDKLSNIF--WLSTVVNHSSTVVNCSKMKEIFAIGEE--VDNSIEKIELAQLRYLSLGNLP-EVTS 155 (356)
Q Consensus 81 ~~~l~~L~~L~l~~c~~l~~~~--~l~~ll~~L~~i~~c~~L~~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~-~l~~ 155 (356)
...+++|+.|+++++..-..+. .++.+ ... .+.+|++++.+...... ......+..+++|++|+++++. .+..
T Consensus 292 ~~~l~~L~~L~L~~~~~~~~~~~~~lp~i-~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 369 (680)
T 1ziw_A 292 LHGLFNVRYLNLKRSFTKQSISLASLPKI-DDF-SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369 (680)
T ss_dssp TTTCTTCCEEECTTCBCCC------CCEE-CTT-TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCE
T ss_pred hcCCCCccEEeccchhhhccccccccccc-Chh-hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhh
Confidence 2446788888887642211100 01111 111 22222222222211000 0011224456677777776643 1222
Q ss_pred eecCCCCCCC---------CCCCC----CCccccccccccceeecCCcc-ccc-cccccCCCcCeEEecceeeeEEcccC
Q 044144 156 FCREVKTPSA---------SPNRP----ASQEESTTTYSSSEITLDTST-LLF-NEKVALPNLEALEISAINVDKIWHYN 220 (356)
Q Consensus 156 ~~~~~~~~~~---------~~~~~----~~~~~~~~~l~~l~i~~~~~~-~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~ 220 (356)
++...+.... ..++. ......+..++.++++.+.-. .++ ..+..+++|++|++.+|+++.+
T Consensus 370 l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~---- 445 (680)
T 1ziw_A 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQL---- 445 (680)
T ss_dssp ECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEEC----
T ss_pred cchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCccee----
Confidence 2211110000 00000 001113445667777666532 222 3456677888888888776662
Q ss_pred CCCCCCCCCCcCccEEeeccCcCcccc-chhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeecccc
Q 044144 221 QIPAAVFPRFQNLTRLIVWHCNKLKYI-FSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYL 299 (356)
Q Consensus 221 ~~p~~~~~~l~~L~~L~i~~c~~l~~l-~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c 299 (356)
+...+..+++|+.|++.++. +..+ .....+..+++|+.|++++|. +..+. +..... +++|++|+++++
T Consensus 446 --~~~~~~~~~~L~~L~l~~n~-l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~~~------l~~L~~L~Ls~N 514 (680)
T 1ziw_A 446 --TRNSFALVPSLQRLMLRRVA-LKNVDSSPSPFQPLRNLTILDLSNNN-IANIN-DDMLEG------LEKLEILDLQHN 514 (680)
T ss_dssp --CTTTTTTCTTCCEEECTTSC-CBCTTCSSCTTTTCTTCCEEECCSSC-CCCCC-TTTTTT------CTTCCEEECCSS
T ss_pred --ChhhhhcCcccccchhcccc-ccccccCCcccccCCCCCEEECCCCC-CCcCC-hhhhcc------ccccCEEeCCCC
Confidence 22246677888888887753 2211 122456778889999998875 65542 233333 789999999887
Q ss_pred ccceeecCCC-------CcCCCCcccEEeeccCcCccccccc
Q 044144 300 PKLRCLYPGM-------HTSEWPALEIFSVFRCDKLKIFAAD 334 (356)
Q Consensus 300 ~~L~~~~~~~-------~~~~~~~L~~L~i~~C~~l~~l~~~ 334 (356)
+++.++... .+..+++|+.|++.++ +++.+|.+
T Consensus 515 -~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~ 554 (680)
T 1ziw_A 515 -NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVE 554 (680)
T ss_dssp -CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTT
T ss_pred -CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHH
Confidence 566653321 1356789999999987 57777754
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.49 E-value=7.3e-13 Score=121.44 Aligned_cols=271 Identities=15% Similarity=0.069 Sum_probs=173.5
Q ss_pred CcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccccccccccc
Q 044144 3 NNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVE 82 (356)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 82 (356)
++++.|++.+.. +..+ ....+.++++|++|+++++ +++.+ .+..+..+++|++|+++++ .++.++...
T Consensus 54 ~~l~~L~l~~n~-i~~~-~~~~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n-~l~~l~~~~---- 121 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISEL-RKDDFKGLQHLYALVLVNN-KISKI----HEKAFSPLRKLQKLYISKN-HLVEIPPNL---- 121 (332)
T ss_dssp TTCCEEECCSSC-CCEE-CTTTTTTCTTCCEEECCSS-CCCEE----CGGGSTTCTTCCEEECCSS-CCCSCCSSC----
T ss_pred CCCeEEECCCCc-CCcc-CHhHhhCCCCCcEEECCCC-ccCcc----CHhHhhCcCCCCEEECCCC-cCCccCccc----
Confidence 578899998764 4443 3335678999999999998 67665 2345778899999999985 566665433
Q ss_pred CCCCccEEEEccCCCccccCc-----hhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceee
Q 044144 83 SFNELKIIQAYNCDKLSNIFW-----LSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFC 157 (356)
Q Consensus 83 ~l~~L~~L~l~~c~~l~~~~~-----l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 157 (356)
+++|++|+++++. +..++. +..+ +.| .++++.-- ... .....+..+ +|+.|+++++. ++.++
T Consensus 122 -~~~L~~L~l~~n~-i~~~~~~~~~~l~~L-~~L-~l~~n~l~-~~~------~~~~~~~~l-~L~~L~l~~n~-l~~l~ 188 (332)
T 2ft3_A 122 -PSSLVELRIHDNR-IRKVPKGVFSGLRNM-NCI-EMGGNPLE-NSG------FEPGAFDGL-KLNYLRISEAK-LTGIP 188 (332)
T ss_dssp -CTTCCEEECCSSC-CCCCCSGGGSSCSSC-CEE-ECCSCCCB-GGG------SCTTSSCSC-CCSCCBCCSSB-CSSCC
T ss_pred -cccCCEEECCCCc-cCccCHhHhCCCccC-CEE-ECCCCccc-cCC------CCcccccCC-ccCEEECcCCC-CCccC
Confidence 4899999999874 343332 2223 334 55544321 000 001122333 78888888753 44333
Q ss_pred cCCCCCCCCCCCCCCccccccccccceeecCCcccc-ccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEE
Q 044144 158 REVKTPSASPNRPASQEESTTTYSSSEITLDTSTLL-FNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRL 236 (356)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L 236 (356)
... ...++.+.++.+.-... +..+..+++|+.|++.+|+++. .+...+..+++|+.|
T Consensus 189 ~~~----------------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L 246 (332)
T 2ft3_A 189 KDL----------------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM------IENGSLSFLPTLREL 246 (332)
T ss_dssp SSS----------------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC------CCTTGGGGCTTCCEE
T ss_pred ccc----------------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc------CChhHhhCCCCCCEE
Confidence 221 13477788877764333 3567788999999999998877 333346788999999
Q ss_pred eeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccce-eecCCCCcCCCC
Q 044144 237 IVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLR-CLYPGMHTSEWP 315 (356)
Q Consensus 237 ~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~-~~~~~~~~~~~~ 315 (356)
+++++ ++..+ |.. +..+++|+.|+++++. +..+. ............+++|+.|.+.++|-.. .+.. ..+..++
T Consensus 247 ~L~~N-~l~~l-p~~-l~~l~~L~~L~l~~N~-l~~~~-~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~-~~~~~l~ 320 (332)
T 2ft3_A 247 HLDNN-KLSRV-PAG-LPDLKLLQVVYLHTNN-ITKVG-VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP-ATFRCVT 320 (332)
T ss_dssp ECCSS-CCCBC-CTT-GGGCTTCCEEECCSSC-CCBCC-TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG-GGGTTBC
T ss_pred ECCCC-cCeec-Chh-hhcCccCCEEECCCCC-CCccC-hhHccccccccccccccceEeecCcccccccCc-ccccccc
Confidence 99885 67776 644 6789999999999986 66552 2222221112235789999999987432 2222 2235678
Q ss_pred cccEEeeccCc
Q 044144 316 ALEIFSVFRCD 326 (356)
Q Consensus 316 ~L~~L~i~~C~ 326 (356)
+|+.+++.++.
T Consensus 321 ~L~~l~l~~n~ 331 (332)
T 2ft3_A 321 DRLAIQFGNYK 331 (332)
T ss_dssp CSTTEEC----
T ss_pred hhhhhhccccc
Confidence 88888888765
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.49 E-value=7.8e-13 Score=118.51 Aligned_cols=67 Identities=15% Similarity=0.131 Sum_probs=43.2
Q ss_pred ccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCcccc
Q 044144 27 GFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNI 101 (356)
Q Consensus 27 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~ 101 (356)
-.++|++|+++++ .++.+. ...+..+++|++|+++++ .++.+.... ...+++|++|+++++..+..+
T Consensus 30 ~~~~l~~L~l~~n-~i~~~~----~~~~~~~~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~n~~l~~~ 96 (285)
T 1ozn_A 30 IPAASQRIFLHGN-RISHVP----AASFRACRNLTILWLHSN-VLARIDAAA--FTGLALLEQLDLSDNAQLRSV 96 (285)
T ss_dssp CCTTCSEEECTTS-CCCEEC----TTTTTTCTTCCEEECCSS-CCCEECTTT--TTTCTTCCEEECCSCTTCCCC
T ss_pred CCCCceEEEeeCC-cCCccC----HHHcccCCCCCEEECCCC-ccceeCHhh--cCCccCCCEEeCCCCCCcccc
Confidence 3567888888887 566551 224567788888888874 455552211 245788888888887655543
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.49 E-value=5.2e-13 Score=120.90 Aligned_cols=228 Identities=17% Similarity=0.163 Sum_probs=109.0
Q ss_pred cCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCc----
Q 044144 28 FSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFW---- 103 (356)
Q Consensus 28 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~---- 103 (356)
.++|++|+++++ +++.+ .......+++|++|+++++ .++.+.........+++|++|+++++. +..++.
T Consensus 27 ~~~l~~L~L~~n-~l~~i----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~ 99 (306)
T 2z66_A 27 PSSATRLELESN-KLQSL----PHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLG 99 (306)
T ss_dssp CTTCCEEECCSS-CCCCC----CTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEET
T ss_pred CCCCCEEECCCC-ccCcc----CHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCc-cccChhhcCC
Confidence 357778888777 45544 1123456777888877774 343331111111336778888777763 222221
Q ss_pred hhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccc
Q 044144 104 LSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSS 183 (356)
Q Consensus 104 l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 183 (356)
+..+ +.| .++++. +..++. ...+..+++|+.|+++++. +...
T Consensus 100 l~~L-~~L-~l~~n~-l~~~~~-------~~~~~~l~~L~~L~l~~n~-l~~~--------------------------- 141 (306)
T 2z66_A 100 LEQL-EHL-DFQHSN-LKQMSE-------FSVFLSLRNLIYLDISHTH-TRVA--------------------------- 141 (306)
T ss_dssp CTTC-CEE-ECTTSE-EESSTT-------TTTTTTCTTCCEEECTTSC-CEEC---------------------------
T ss_pred CCCC-CEE-ECCCCc-cccccc-------chhhhhccCCCEEECCCCc-CCcc---------------------------
Confidence 1122 222 333321 111100 0123345666666666543 1111
Q ss_pred eeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEE
Q 044144 184 EITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLE 263 (356)
Q Consensus 184 ~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~ 263 (356)
.+..+..+++|+.|++.++.++... .|. .+..+++|+.|+++++ .+..+ +...+..+++|++|+
T Consensus 142 ---------~~~~~~~l~~L~~L~l~~n~l~~~~----~~~-~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 142 ---------FNGIFNGLSSLEVLKMAGNSFQENF----LPD-IFTELRNLTFLDLSQC-QLEQL-SPTAFNSLSSLQVLN 205 (306)
T ss_dssp ---------STTTTTTCTTCCEEECTTCEEGGGE----ECS-CCTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEE
T ss_pred ---------chhhcccCcCCCEEECCCCcccccc----chh-HHhhCcCCCEEECCCC-CcCCc-CHHHhcCCCCCCEEE
Confidence 1222344566666666666554300 111 2445666666666654 44454 334455566666666
Q ss_pred EecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCC-CcccEEeeccCc
Q 044144 264 VRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEW-PALEIFSVFRCD 326 (356)
Q Consensus 264 i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~-~~L~~L~i~~C~ 326 (356)
++++. +..+. ...... +++|++|+++++ .++....... ..+ ++|+.|++.+++
T Consensus 206 L~~N~-l~~~~-~~~~~~------l~~L~~L~L~~N-~l~~~~~~~~-~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 206 MSHNN-FFSLD-TFPYKC------LNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTSC-CSBCC-SGGGTT------CTTCCEEECTTS-CCCBCSSSSC-CCCCTTCCEEECTTCC
T ss_pred CCCCc-cCccC-hhhccC------cccCCEeECCCC-CCcccCHHHH-HhhhccCCEEEccCCC
Confidence 66654 33331 111222 566666666665 4444333221 334 366666666654
No 47
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.48 E-value=6e-13 Score=116.15 Aligned_cols=188 Identities=13% Similarity=0.097 Sum_probs=118.9
Q ss_pred cccceeeccccccccccccccccccCCCCccEEEEccCCCccccCchhhhhccccccccccchhhhhcccccccCccccc
Q 044144 58 PLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFWLSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKI 137 (356)
Q Consensus 58 ~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~ 137 (356)
++|++|++++. .++.++...+ ..+++|++|+++++..++.++.. .+.
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~~--~~l~~L~~L~l~~n~~l~~i~~~------------------------------~f~ 77 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHAF--SNLPNISRIYVSIDVTLQQLESH------------------------------SFY 77 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTTT--TTCTTCCEEEEECCSSCCEECTT------------------------------TEE
T ss_pred CcccEEEEeCC-cceEECHHHc--cCCCCCcEEeCCCCCCcceeCHh------------------------------HcC
Confidence 47888888773 4666644221 34778888888876545433310 022
Q ss_pred ccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeEEc
Q 044144 138 ELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIW 217 (356)
Q Consensus 138 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~ 217 (356)
.+++|++|++++|..++.++.. .+..+++|+.|++.+++++.
T Consensus 78 ~l~~L~~L~l~~~n~l~~i~~~------------------------------------~f~~l~~L~~L~l~~n~l~~-- 119 (239)
T 2xwt_C 78 NLSKVTHIEIRNTRNLTYIDPD------------------------------------ALKELPLLKFLGIFNTGLKM-- 119 (239)
T ss_dssp SCTTCCEEEEEEETTCCEECTT------------------------------------SEECCTTCCEEEEEEECCCS--
T ss_pred CCcCCcEEECCCCCCeeEcCHH------------------------------------HhCCCCCCCEEeCCCCCCcc--
Confidence 4467777777765555544322 12456788888888876665
Q ss_pred ccCCCCCCCCCCCcCcc---EEeeccCcCccccchhhhhhhcCCCC-eEEEecCcccceeeccCCCCcCcccccCCccCe
Q 044144 218 HYNQIPAAVFPRFQNLT---RLIVWHCNKLKYIFSASMIGSLKHLQ-HLEVRFCEDLQEIISENRADEVIPYFVFPQLTT 293 (356)
Q Consensus 218 ~~~~~p~~~~~~l~~L~---~L~i~~c~~l~~l~~~~~~~~l~~L~-~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~ 293 (356)
+|. +..+++|+ .|++++++.+..+ +...+..+++|+ +|+++++. ++.+. ..... .++|++
T Consensus 120 ----lp~--~~~l~~L~~L~~L~l~~N~~l~~i-~~~~~~~l~~L~~~L~l~~n~-l~~i~--~~~~~------~~~L~~ 183 (239)
T 2xwt_C 120 ----FPD--LTKVYSTDIFFILEITDNPYMTSI-PVNAFQGLCNETLTLKLYNNG-FTSVQ--GYAFN------GTKLDA 183 (239)
T ss_dssp ----CCC--CTTCCBCCSEEEEEEESCTTCCEE-CTTTTTTTBSSEEEEECCSCC-CCEEC--TTTTT------TCEEEE
T ss_pred ----ccc--cccccccccccEEECCCCcchhhc-CcccccchhcceeEEEcCCCC-CcccC--HhhcC------CCCCCE
Confidence 333 44556666 8888876677777 656667778888 88887765 55542 22211 357888
Q ss_pred eeccccccceeecCCCCcCCC-CcccEEeeccCcCccccccc
Q 044144 294 LILQYLPKLRCLYPGMHTSEW-PALEIFSVFRCDKLKIFAAD 334 (356)
Q Consensus 294 L~l~~c~~L~~~~~~~~~~~~-~~L~~L~i~~C~~l~~l~~~ 334 (356)
|++.++++++.++.... ..+ ++|+.|++.++ +++.+|..
T Consensus 184 L~L~~n~~l~~i~~~~~-~~l~~~L~~L~l~~N-~l~~l~~~ 223 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAF-GGVYSGPSLLDVSQT-SVTALPSK 223 (239)
T ss_dssp EECTTCTTCCEECTTTT-TTCSBCCSEEECTTC-CCCCCCCT
T ss_pred EEcCCCCCcccCCHHHh-hccccCCcEEECCCC-ccccCChh
Confidence 88888777777765532 456 78888888874 46777655
No 48
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.48 E-value=1.7e-12 Score=128.65 Aligned_cols=250 Identities=13% Similarity=0.035 Sum_probs=139.5
Q ss_pred cceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccC
Q 044144 4 NVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVES 83 (356)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 83 (356)
+++.|++.+.. +..+ +. . -.++|+.|++++| +++.+.. .+++|++|+++++ .++.++. .
T Consensus 41 ~l~~L~ls~n~-L~~l-p~-~--l~~~L~~L~L~~N-~l~~lp~--------~l~~L~~L~Ls~N-~l~~lp~------~ 99 (622)
T 3g06_A 41 GNAVLNVGESG-LTTL-PD-C--LPAHITTLVIPDN-NLTSLPA--------LPPELRTLEVSGN-QLTSLPV------L 99 (622)
T ss_dssp CCCEEECCSSC-CSCC-CS-C--CCTTCSEEEECSC-CCSCCCC--------CCTTCCEEEECSC-CCSCCCC------C
T ss_pred CCcEEEecCCC-cCcc-Ch-h--hCCCCcEEEecCC-CCCCCCC--------cCCCCCEEEcCCC-cCCcCCC------C
Confidence 46677776653 3333 22 1 1378999999888 5665511 4688999999885 4665543 4
Q ss_pred CCCccEEEEccCCCccccCc-hhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCC
Q 044144 84 FNELKIIQAYNCDKLSNIFW-LSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKT 162 (356)
Q Consensus 84 l~~L~~L~l~~c~~l~~~~~-l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 162 (356)
+++|++|+++++ ++..++. +..+ +.| .++++. +..++. .+++|++|+++++ .++.++...
T Consensus 100 l~~L~~L~Ls~N-~l~~l~~~l~~L-~~L-~L~~N~-l~~lp~------------~l~~L~~L~Ls~N-~l~~l~~~~-- 160 (622)
T 3g06_A 100 PPGLLELSIFSN-PLTHLPALPSGL-CKL-WIFGNQ-LTSLPV------------LPPGLQELSVSDN-QLASLPALP-- 160 (622)
T ss_dssp CTTCCEEEECSC-CCCCCCCCCTTC-CEE-ECCSSC-CSCCCC------------CCTTCCEEECCSS-CCSCCCCCC--
T ss_pred CCCCCEEECcCC-cCCCCCCCCCCc-CEE-ECCCCC-CCcCCC------------CCCCCCEEECcCC-cCCCcCCcc--
Confidence 688999999886 4454443 2334 555 666553 444442 2367788877775 333332110
Q ss_pred CCC-----CCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEe
Q 044144 163 PSA-----SPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLI 237 (356)
Q Consensus 163 ~~~-----~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~ 237 (356)
... ..|...........++.|.++.+.-..++. .+++|+.|.+.+|.++. +|. .+++|+.|+
T Consensus 161 ~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~------l~~----~~~~L~~L~ 227 (622)
T 3g06_A 161 SELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLTS------LPA----LPSGLKELI 227 (622)
T ss_dssp TTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSS------CCC----CCTTCCEEE
T ss_pred CCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCCcccc------cCC----CCCCCCEEE
Confidence 000 000000000122334455554443222221 23556666666555444 222 236677777
Q ss_pred eccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcc
Q 044144 238 VWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPAL 317 (356)
Q Consensus 238 i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L 317 (356)
++++ +++.+ | ..+++|+.|++++|. +..+. . . +++|+.|++.+| +++.++... ..+++|
T Consensus 228 Ls~N-~L~~l-p----~~l~~L~~L~Ls~N~-L~~lp--~---~------~~~L~~L~Ls~N-~L~~lp~~l--~~l~~L 286 (622)
T 3g06_A 228 VSGN-RLTSL-P----VLPSELKELMVSGNR-LTSLP--M---L------PSGLLSLSVYRN-QLTRLPESL--IHLSSE 286 (622)
T ss_dssp CCSS-CCSCC-C----CCCTTCCEEECCSSC-CSCCC--C---C------CTTCCEEECCSS-CCCSCCGGG--GGSCTT
T ss_pred ccCC-ccCcC-C----CCCCcCcEEECCCCC-CCcCC--c---c------cccCcEEeCCCC-CCCcCCHHH--hhcccc
Confidence 7664 56555 4 345677777777764 54442 1 1 567888888776 677665443 567788
Q ss_pred cEEeeccCcC
Q 044144 318 EIFSVFRCDK 327 (356)
Q Consensus 318 ~~L~i~~C~~ 327 (356)
+.|++.+++-
T Consensus 287 ~~L~L~~N~l 296 (622)
T 3g06_A 287 TTVNLEGNPL 296 (622)
T ss_dssp CEEECCSCCC
T ss_pred CEEEecCCCC
Confidence 8888888763
No 49
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.48 E-value=1.4e-12 Score=128.26 Aligned_cols=109 Identities=13% Similarity=0.112 Sum_probs=63.9
Q ss_pred ccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhc-CCCCeEEEecCcccceeecc
Q 044144 198 VALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSL-KHLQHLEVRFCEDLQEIISE 276 (356)
Q Consensus 198 ~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l-~~L~~L~i~~c~~l~~i~~~ 276 (356)
..+++|+.|++++|+++.. +|...+..+++|+.|+++++. +....+ ..+ ++|+.|++++|. ++.+ +
T Consensus 400 ~~l~~L~~L~l~~N~l~~~-----~~~~~~~~l~~L~~L~l~~n~-l~~~~~----~~l~~~L~~L~L~~N~-l~~i--p 466 (562)
T 3a79_B 400 KNMSSLETLDVSLNSLNSH-----AYDRTCAWAESILVLNLSSNM-LTGSVF----RCLPPKVKVLDLHNNR-IMSI--P 466 (562)
T ss_dssp TTCTTCCEEECTTSCCBSC-----CSSCCCCCCTTCCEEECCSSC-CCGGGG----SSCCTTCSEEECCSSC-CCCC--C
T ss_pred cCCCCCCEEECCCCcCCCc-----cChhhhcCcccCCEEECCCCC-CCcchh----hhhcCcCCEEECCCCc-Cccc--C
Confidence 3444455555544433321 222234455666666665542 322212 122 467777777663 5544 2
Q ss_pred CCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcC
Q 044144 277 NRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDK 327 (356)
Q Consensus 277 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~ 327 (356)
..... +++|++|+++++ +++.++... +..+++|+.|++.+++=
T Consensus 467 ~~~~~------l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~l~~N~~ 509 (562)
T 3a79_B 467 KDVTH------LQALQELNVASN-QLKSVPDGV-FDRLTSLQYIWLHDNPW 509 (562)
T ss_dssp TTTTS------SCCCSEEECCSS-CCCCCCTTS-TTTCTTCCCEECCSCCB
T ss_pred hhhcC------CCCCCEEECCCC-CCCCCCHHH-HhcCCCCCEEEecCCCc
Confidence 22223 889999999887 788888762 36789999999998874
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.47 E-value=4.9e-13 Score=121.69 Aligned_cols=242 Identities=13% Similarity=0.043 Sum_probs=159.8
Q ss_pred cccceeecccccccc---ccccccccccCCCCccEEEEccCCCccc-cCc-h---hhhhccccccccccchhhhhccccc
Q 044144 58 PLLESLILHNLINME---RIWIDQLKVESFNELKIIQAYNCDKLSN-IFW-L---STVVNHSSTVVNCSKMKEIFAIGEE 129 (356)
Q Consensus 58 ~~L~~L~l~~~~~l~---~l~~~~~~~~~l~~L~~L~l~~c~~l~~-~~~-l---~~ll~~L~~i~~c~~L~~l~~~~~~ 129 (356)
.++++|++.++. +. .++... ..+++|++|+++++.++.. ++. + ..+ +.| .++++.--..++
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l---~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L-~~L-~Ls~n~l~~~~p----- 118 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSL---ANLPYLNFLYIGGINNLVGPIPPAIAKLTQL-HYL-YITHTNVSGAIP----- 118 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGG---GGCTTCSEEEEEEETTEESCCCGGGGGCTTC-SEE-EEEEECCEEECC-----
T ss_pred ceEEEEECCCCC-ccCCcccChhH---hCCCCCCeeeCCCCCcccccCChhHhcCCCC-CEE-ECcCCeeCCcCC-----
Confidence 589999999954 44 344332 5689999999997555553 221 2 233 444 555554322333
Q ss_pred ccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceeecCCcc-ccccccccCC-CcCeEE
Q 044144 130 VDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEITLDTST-LLFNEKVALP-NLEALE 207 (356)
Q Consensus 130 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~-~l~~~~~~l~-~L~~L~ 207 (356)
..+..+++|++|+++++.--..++.. ...+..++.|.++.+.-. ..+..+..++ +|+.|+
T Consensus 119 ----~~~~~l~~L~~L~Ls~N~l~~~~p~~--------------~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~ 180 (313)
T 1ogq_A 119 ----DFLSQIKTLVTLDFSYNALSGTLPPS--------------ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180 (313)
T ss_dssp ----GGGGGCTTCCEEECCSSEEESCCCGG--------------GGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE
T ss_pred ----HHHhCCCCCCEEeCCCCccCCcCChH--------------HhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEE
Confidence 23567899999999886422122211 124566888888888754 5677788887 999999
Q ss_pred ecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCccccc
Q 044144 208 ISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFV 287 (356)
Q Consensus 208 l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~ 287 (356)
+.+++++.. .|. .+..++ |+.|+++++ .+... +...+..+++|+.|+++++. +.... .....
T Consensus 181 L~~N~l~~~-----~~~-~~~~l~-L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~------ 242 (313)
T 1ogq_A 181 ISRNRLTGK-----IPP-TFANLN-LAFVDLSRN-MLEGD-ASVLFGSDKNTQKIHLAKNS-LAFDL--GKVGL------ 242 (313)
T ss_dssp CCSSEEEEE-----CCG-GGGGCC-CSEEECCSS-EEEEC-CGGGCCTTSCCSEEECCSSE-ECCBG--GGCCC------
T ss_pred CcCCeeecc-----CCh-HHhCCc-ccEEECcCC-cccCc-CCHHHhcCCCCCEEECCCCc-eeeec--Ccccc------
Confidence 999988763 332 244555 999999885 56655 44667889999999999986 43332 11333
Q ss_pred CCccCeeeccccccce-eecCCCCcCCCCcccEEeeccCcCcccccccccCCCCCCCCCCCCCC
Q 044144 288 FPQLTTLILQYLPKLR-CLYPGMHTSEWPALEIFSVFRCDKLKIFAADLSQNNENDQLGIPAQQ 350 (356)
Q Consensus 288 l~~L~~L~l~~c~~L~-~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~~~~~~~~~~~~~~~ 350 (356)
+++|++|++.++ +++ .++... ..+++|+.|++.++.--..+|.... ......+.+.+++
T Consensus 243 l~~L~~L~Ls~N-~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~ip~~~~-l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 243 SKNLNGLDLRNN-RIYGTLPQGL--TQLKFLHSLNVSFNNLCGEIPQGGN-LQRFDVSAYANNK 302 (313)
T ss_dssp CTTCCEEECCSS-CCEECCCGGG--GGCTTCCEEECCSSEEEEECCCSTT-GGGSCGGGTCSSS
T ss_pred cCCCCEEECcCC-cccCcCChHH--hcCcCCCEEECcCCcccccCCCCcc-ccccChHHhcCCC
Confidence 789999999988 455 444433 6789999999999875447776532 2334445555554
No 51
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.47 E-value=1.1e-12 Score=125.34 Aligned_cols=127 Identities=20% Similarity=0.157 Sum_probs=90.3
Q ss_pred CcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccccccccccc
Q 044144 3 NNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVE 82 (356)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 82 (356)
++++.|++.+.. +..+ ....+.++++|++|+++++ .++.+ ....+..+++|++|+++++ .++.++.+.+ .
T Consensus 75 ~~l~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~Ls~n-~i~~~----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~--~ 144 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMI-QADTFRHLHHLEVLQLGRN-SIRQI----EVGAFNGLASLNTLELFDN-WLTVIPSGAF--E 144 (452)
T ss_dssp TTCSEEECCSSC-CCEE-CTTTTTTCTTCCEEECCSS-CCCEE----CTTTTTTCTTCCEEECCSS-CCSBCCTTTS--S
T ss_pred CCccEEECcCCc-CceE-CHHHcCCCCCCCEEECCCC-ccCCc----ChhhccCcccCCEEECCCC-cCCccChhhh--c
Confidence 468899998764 4443 3445678999999999998 67766 2245677899999999995 5776654322 4
Q ss_pred CCCCccEEEEccCCCccccCc-----hhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCC
Q 044144 83 SFNELKIIQAYNCDKLSNIFW-----LSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNL 150 (356)
Q Consensus 83 ~l~~L~~L~l~~c~~l~~~~~-----l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 150 (356)
.+++|++|+++++. +..++. ++.+ +.| .+++|..+..++. ..+..+++|+.|+++++
T Consensus 145 ~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L-~~L-~l~~~~~l~~i~~--------~~~~~l~~L~~L~L~~n 206 (452)
T 3zyi_A 145 YLSKLRELWLRNNP-IESIPSYAFNRVPSL-MRL-DLGELKKLEYISE--------GAFEGLFNLKYLNLGMC 206 (452)
T ss_dssp SCTTCCEEECCSCC-CCEECTTTTTTCTTC-CEE-ECCCCTTCCEECT--------TTTTTCTTCCEEECTTS
T ss_pred ccCCCCEEECCCCC-cceeCHhHHhcCCcc-cEE-eCCCCCCccccCh--------hhccCCCCCCEEECCCC
Confidence 58999999999874 444432 3344 555 7888777776653 12456789999999886
No 52
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.46 E-value=4.1e-12 Score=124.24 Aligned_cols=87 Identities=15% Similarity=0.137 Sum_probs=52.1
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccc
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKV 81 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 81 (356)
+++|++|+++++. +... ....++++++|++|+++++ .++.+ ..+..++.+++|++|++.++..+..++... .
T Consensus 73 l~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~---~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~--~ 144 (549)
T 2z81_A 73 LGSLEHLDLSDNH-LSSL-SSSWFGPLSSLKYLNLMGN-PYQTL---GVTSLFPNLTNLQTLRIGNVETFSEIRRID--F 144 (549)
T ss_dssp CTTCCEEECTTSC-CCSC-CHHHHTTCTTCCEEECTTC-CCSSS---CSSCSCTTCTTCCEEEEEESSSCCEECTTT--T
T ss_pred cccCCEEECCCCc-cCcc-CHHHhccCCCCcEEECCCC-ccccc---chhhhhhccCCccEEECCCCccccccCHhh--h
Confidence 5678888887764 2222 2222457888888888877 44422 112345667788888887765555554221 1
Q ss_pred cCCCCccEEEEccCC
Q 044144 82 ESFNELKIIQAYNCD 96 (356)
Q Consensus 82 ~~l~~L~~L~l~~c~ 96 (356)
..+++|++|+++++.
T Consensus 145 ~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 145 AGLTSLNELEIKALS 159 (549)
T ss_dssp TTCCEEEEEEEEETT
T ss_pred hcccccCeeeccCCc
Confidence 346777777777654
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.46 E-value=2.4e-13 Score=123.90 Aligned_cols=243 Identities=16% Similarity=0.103 Sum_probs=129.3
Q ss_pred ccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCchhh
Q 044144 27 GFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFWLST 106 (356)
Q Consensus 27 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~l~~ 106 (356)
.+++|++|+++++ +++.+ .+..+..+++|++|+++++. +...+. ...+++|++|+++++ ++..++..+.
T Consensus 32 ~~~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~-l~~~~~----~~~l~~L~~L~Ls~n-~l~~l~~~~~ 100 (317)
T 3o53_A 32 SAWNVKELDLSGN-PLSQI----SAADLAPFTKLELLNLSSNV-LYETLD----LESLSTLRTLDLNNN-YVQELLVGPS 100 (317)
T ss_dssp TGGGCSEEECTTS-CCCCC----CHHHHTTCTTCCEEECTTSC-CEEEEE----ETTCTTCCEEECCSS-EEEEEEECTT
T ss_pred cCCCCCEEECcCC-ccCcC----CHHHhhCCCcCCEEECCCCc-CCcchh----hhhcCCCCEEECcCC-ccccccCCCC
Confidence 4567777777776 45433 12345667777777777743 433321 345677777777775 3444444444
Q ss_pred hhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceee
Q 044144 107 VVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEIT 186 (356)
Q Consensus 107 ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~ 186 (356)
+ +.| .++++. +..++ ...+++|++|.++++. ++.+....+ ..+..++.|.++
T Consensus 101 L-~~L-~l~~n~-l~~~~-----------~~~~~~L~~L~l~~N~-l~~~~~~~~-------------~~l~~L~~L~Ls 152 (317)
T 3o53_A 101 I-ETL-HAANNN-ISRVS-----------CSRGQGKKNIYLANNK-ITMLRDLDE-------------GCRSRVQYLDLK 152 (317)
T ss_dssp C-CEE-ECCSSC-CSEEE-----------ECCCSSCEEEECCSSC-CCSGGGBCT-------------GGGSSEEEEECT
T ss_pred c-CEE-ECCCCc-cCCcC-----------ccccCCCCEEECCCCC-CCCccchhh-------------hccCCCCEEECC
Confidence 4 555 554443 22222 1234667777776643 222211100 023335555555
Q ss_pred cCCcccc-cccc-ccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEE
Q 044144 187 LDTSTLL-FNEK-VALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEV 264 (356)
Q Consensus 187 ~~~~~~l-~~~~-~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i 264 (356)
.+.-... +..+ ..+++|+.|++.+|.++.+ +. ...+++|+.|+++++ ++..+ +.. +..+++|+.|++
T Consensus 153 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~------~~--~~~l~~L~~L~Ls~N-~l~~l-~~~-~~~l~~L~~L~L 221 (317)
T 3o53_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV------KG--QVVFAKLKTLDLSSN-KLAFM-GPE-FQSAAGVTWISL 221 (317)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE------EC--CCCCTTCCEEECCSS-CCCEE-CGG-GGGGTTCSEEEC
T ss_pred CCCCCcccHHHHhhccCcCCEEECCCCcCccc------cc--ccccccCCEEECCCC-cCCcc-hhh-hcccCcccEEEC
Confidence 4442222 2222 3467777777777766663 11 113577777777664 56665 433 556777777777
Q ss_pred ecCcccceeeccCCCCcCcccccCCccCeeeccccccc-eeecCCCCcCCCCcccEEeeccCcCccc
Q 044144 265 RFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKL-RCLYPGMHTSEWPALEIFSVFRCDKLKI 330 (356)
Q Consensus 265 ~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L-~~~~~~~~~~~~~~L~~L~i~~C~~l~~ 330 (356)
++|. +..+ +..... +++|+.|++.+++-- ..++... ..++.|+.+++.++..++.
T Consensus 222 ~~N~-l~~l--~~~~~~------l~~L~~L~l~~N~~~~~~~~~~~--~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 222 RNNK-LVLI--EKALRF------SQNLEHFDLRGNGFHCGTLRDFF--SKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp TTSC-CCEE--CTTCCC------CTTCCEEECTTCCCBHHHHHHHH--HTCHHHHHHHHHHHHHHHS
T ss_pred cCCc-ccch--hhHhhc------CCCCCEEEccCCCccCcCHHHHH--hccccceEEECCCchhccC
Confidence 7764 5554 233333 667777777776433 1222211 4556677766665555443
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.46 E-value=7.9e-13 Score=126.03 Aligned_cols=221 Identities=17% Similarity=0.184 Sum_probs=143.0
Q ss_pred CcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccccccccccc
Q 044144 3 NNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVE 82 (356)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 82 (356)
++++.|++.+.. +..+ ....+.++++|++|+++++ .++.+ ....+..+++|++|+++++ .++.++.+. ..
T Consensus 64 ~~l~~L~L~~n~-i~~~-~~~~~~~l~~L~~L~Ls~n-~i~~i----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~ 133 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQII-KVNSFKHLRHLEILQLSRN-HIRTI----EIGAFNGLANLNTLELFDN-RLTTIPNGA--FV 133 (440)
T ss_dssp TTCSEEECCSCC-CCEE-CTTTTSSCSSCCEEECCSS-CCCEE----CGGGGTTCSSCCEEECCSS-CCSSCCTTT--SC
T ss_pred CCCcEEEccCCc-CCee-CHHHhhCCCCCCEEECCCC-cCCcc----ChhhccCCccCCEEECCCC-cCCeeCHhH--hh
Confidence 467889998764 4443 3345678999999999998 67766 2245677899999999995 677765432 24
Q ss_pred CCCCccEEEEccCCCccccCc-----hhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceee
Q 044144 83 SFNELKIIQAYNCDKLSNIFW-----LSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFC 157 (356)
Q Consensus 83 ~l~~L~~L~l~~c~~l~~~~~-----l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 157 (356)
.+++|++|+++++. +..++. ++.+ +.| .+.++..+..++. ..+..+++|++|+++++ +++.++
T Consensus 134 ~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L-~~L-~l~~~~~l~~i~~--------~~~~~l~~L~~L~L~~n-~l~~~~ 201 (440)
T 3zyj_A 134 YLSKLKELWLRNNP-IESIPSYAFNRIPSL-RRL-DLGELKRLSYISE--------GAFEGLSNLRYLNLAMC-NLREIP 201 (440)
T ss_dssp SCSSCCEEECCSCC-CCEECTTTTTTCTTC-CEE-ECCCCTTCCEECT--------TTTTTCSSCCEEECTTS-CCSSCC
T ss_pred ccccCceeeCCCCc-ccccCHHHhhhCccc-CEe-CCCCCCCcceeCc--------chhhcccccCeecCCCC-cCcccc
Confidence 58999999999874 444432 3344 555 7777776666553 12556789999999886 344333
Q ss_pred cCCCCCCCCCCCCCCccccccccccceeecCCcccc-ccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEE
Q 044144 158 REVKTPSASPNRPASQEESTTTYSSSEITLDTSTLL-FNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRL 236 (356)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l-~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L 236 (356)
. ...+..++.|+++.+.-... +..+..+++|+.|++.+++++.+ +...+..+++|+.|
T Consensus 202 ~---------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 202 N---------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI------ERNAFDNLQSLVEI 260 (440)
T ss_dssp C---------------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE------CTTSSTTCTTCCEE
T ss_pred c---------------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE------ChhhhcCCCCCCEE
Confidence 1 01334466666666553222 34556667777777777766663 11235566777777
Q ss_pred eeccCcCccccchhhhhhhcCCCCeEEEecCc
Q 044144 237 IVWHCNKLKYIFSASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 237 ~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 268 (356)
+++++ +++.+ +...+..+++|+.|++++++
T Consensus 261 ~L~~N-~l~~~-~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 261 NLAHN-NLTLL-PHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECTTS-CCCCC-CTTTTSSCTTCCEEECCSSC
T ss_pred ECCCC-CCCcc-ChhHhccccCCCEEEcCCCC
Confidence 77663 56666 55556666777777776544
No 55
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.44 E-value=4.1e-12 Score=117.41 Aligned_cols=221 Identities=17% Similarity=0.107 Sum_probs=138.8
Q ss_pred CCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCc--hhh
Q 044144 29 SQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFW--LST 106 (356)
Q Consensus 29 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--l~~ 106 (356)
+++++|+++++ +++.+. ......+++|++|+++++.-++.++.+.+ ..+++++++.+.++.++..+++ +..
T Consensus 30 ~~l~~L~Ls~N-~i~~i~----~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f--~~L~~l~~~l~~~~N~l~~l~~~~f~~ 102 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQ----KGAFSGFGDLEKIEISQNDVLEVIEADVF--SNLPKLHEIRIEKANNLLYINPEAFQN 102 (350)
T ss_dssp TTCSEEEEESC-CCSEEC----TTSSTTCTTCCEEEEECCTTCCEECTTSB--CSCTTCCEEEEEEETTCCEECTTSBCC
T ss_pred CCCCEEEccCC-cCCCcC----HHHHcCCCCCCEEECcCCCCCCccChhHh--hcchhhhhhhcccCCcccccCchhhhh
Confidence 57889999887 687771 12456788899999988665555543321 2467777777777777776542 122
Q ss_pred h--hccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccce
Q 044144 107 V--VNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSE 184 (356)
Q Consensus 107 l--l~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 184 (356)
+ |+.| .++++. +..++. .......++..+.+.+..++..++...+
T Consensus 103 l~~L~~L-~l~~n~-l~~~~~--------~~~~~~~~l~~l~l~~~~~i~~l~~~~f----------------------- 149 (350)
T 4ay9_X 103 LPNLQYL-LISNTG-IKHLPD--------VHKIHSLQKVLLDIQDNINIHTIERNSF----------------------- 149 (350)
T ss_dssp CTTCCEE-EEEEEC-CSSCCC--------CTTCCBSSCEEEEEESCTTCCEECTTSS-----------------------
T ss_pred ccccccc-cccccc-cccCCc--------hhhcccchhhhhhhccccccccccccch-----------------------
Confidence 2 0222 333321 222221 0111223455555555555554443221
Q ss_pred eecCCccccccccccC-CCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEE
Q 044144 185 ITLDTSTLLFNEKVAL-PNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLE 263 (356)
Q Consensus 185 i~~~~~~~l~~~~~~l-~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~ 263 (356)
..+ ..++.|++.+++++.+ |...+ ...+|++|.+.+++.++.+ |...++.+++|+.|+
T Consensus 150 -------------~~~~~~l~~L~L~~N~i~~i------~~~~f-~~~~L~~l~l~~~n~l~~i-~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 150 -------------VGLSFESVILWLNKNGIQEI------HNSAF-NGTQLDELNLSDNNNLEEL-PNDVFHGASGPVILD 208 (350)
T ss_dssp -------------TTSBSSCEEEECCSSCCCEE------CTTSS-TTEEEEEEECTTCTTCCCC-CTTTTTTEECCSEEE
T ss_pred -------------hhcchhhhhhccccccccCC------Chhhc-cccchhHHhhccCCcccCC-CHHHhccCcccchhh
Confidence 122 4678888888888874 22224 4567889988888888888 777788889999999
Q ss_pred EecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeecc
Q 044144 264 VRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFR 324 (356)
Q Consensus 264 i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~ 324 (356)
++++. ++.+. ... +.+|+.|.+.++.+++.+|.. ..+++|+.+++.+
T Consensus 209 Ls~N~-l~~lp--~~~--------~~~L~~L~~l~~~~l~~lP~l---~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 209 ISRTR-IHSLP--SYG--------LENLKKLRARSTYNLKKLPTL---EKLVALMEASLTY 255 (350)
T ss_dssp CTTSC-CCCCC--SSS--------CTTCCEEECTTCTTCCCCCCT---TTCCSCCEEECSC
T ss_pred cCCCC-cCccC--hhh--------hccchHhhhccCCCcCcCCCc---hhCcChhhCcCCC
Confidence 99875 76662 222 568888888888888888753 5678888887754
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.43 E-value=1.1e-12 Score=117.60 Aligned_cols=85 Identities=19% Similarity=0.299 Sum_probs=62.3
Q ss_pred CcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccccccccccc
Q 044144 3 NNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVE 82 (356)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 82 (356)
++++.|++.+.. +..+ ....+..+++|++|+++++ .++.+ .+..+..+++|++|+++++..++.++... ..
T Consensus 32 ~~l~~L~l~~n~-i~~~-~~~~~~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~l~~~~~~~--~~ 102 (285)
T 1ozn_A 32 AASQRIFLHGNR-ISHV-PAASFRACRNLTILWLHSN-VLARI----DAAAFTGLALLEQLDLSDNAQLRSVDPAT--FH 102 (285)
T ss_dssp TTCSEEECTTSC-CCEE-CTTTTTTCTTCCEEECCSS-CCCEE----CTTTTTTCTTCCEEECCSCTTCCCCCTTT--TT
T ss_pred CCceEEEeeCCc-CCcc-CHHHcccCCCCCEEECCCC-cccee----CHhhcCCccCCCEEeCCCCCCccccCHHH--hc
Confidence 478899998764 3443 3334568999999999998 67665 23456778999999999976677663322 24
Q ss_pred CCCCccEEEEccCC
Q 044144 83 SFNELKIIQAYNCD 96 (356)
Q Consensus 83 ~l~~L~~L~l~~c~ 96 (356)
.+++|++|+++++.
T Consensus 103 ~l~~L~~L~l~~n~ 116 (285)
T 1ozn_A 103 GLGRLHTLHLDRCG 116 (285)
T ss_dssp TCTTCCEEECTTSC
T ss_pred CCcCCCEEECCCCc
Confidence 58999999999874
No 57
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.43 E-value=6e-13 Score=128.52 Aligned_cols=215 Identities=17% Similarity=0.128 Sum_probs=101.1
Q ss_pred ccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCchhh
Q 044144 27 GFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFWLST 106 (356)
Q Consensus 27 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~l~~ 106 (356)
.+++|++|+++++ .+..+ .+..+..+++|++|+++++. +...+. ...+++|+.|+++++ .+..++..+.
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~----~~~~~~~l~~L~~L~Ls~N~-l~~~~~----l~~l~~L~~L~Ls~N-~l~~l~~~~~ 100 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQI----SAADLAPFTKLELLNLSSNV-LYETLD----LESLSTLRTLDLNNN-YVQELLVGPS 100 (487)
T ss_dssp TGGGCCEEECCSS-CCCCC----CGGGGTTCTTCCEEECTTSC-CEEEEE----CTTCTTCCEEECCSS-EEEEEEECTT
T ss_pred cCCCccEEEeeCC-cCCCC----CHHHHhCCCCCCEEEeeCCC-CCCCcc----cccCCCCCEEEecCC-cCCCCCCCCC
Confidence 3446777777776 45433 12345667777777777743 433321 345677777777766 4444444444
Q ss_pred hhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceee
Q 044144 107 VVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEIT 186 (356)
Q Consensus 107 ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~ 186 (356)
+ +.| .++++. +..++. ..+++|+.|+++++. ++.+.... .+.+..++.|+++
T Consensus 101 L-~~L-~L~~N~-l~~~~~-----------~~l~~L~~L~L~~N~-l~~~~~~~-------------~~~l~~L~~L~Ls 152 (487)
T 3oja_A 101 I-ETL-HAANNN-ISRVSC-----------SRGQGKKNIYLANNK-ITMLRDLD-------------EGCRSRVQYLDLK 152 (487)
T ss_dssp C-CEE-ECCSSC-CCCEEE-----------CCCSSCEEEECCSSC-CCSGGGBC-------------GGGGSSEEEEECT
T ss_pred c-CEE-ECcCCc-CCCCCc-----------cccCCCCEEECCCCC-CCCCCchh-------------hcCCCCCCEEECC
Confidence 4 555 454443 111111 134566666666543 22111100 0012223333333
Q ss_pred cCCccc-cccccc-cCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEE
Q 044144 187 LDTSTL-LFNEKV-ALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEV 264 (356)
Q Consensus 187 ~~~~~~-l~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i 264 (356)
.+.-.. .+..+. .+++|+.|++++|.++.+ |. ...+++|+.|+++++ .+..+ |.. +..+++|+.|++
T Consensus 153 ~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~------~~--~~~l~~L~~L~Ls~N-~l~~~-~~~-~~~l~~L~~L~L 221 (487)
T 3oja_A 153 LNEIDTVNFAELAASSDTLEHLNLQYNFIYDV------KG--QVVFAKLKTLDLSSN-KLAFM-GPE-FQSAAGVTWISL 221 (487)
T ss_dssp TSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE------EC--CCCCTTCCEEECCSS-CCCEE-CGG-GGGGTTCSEEEC
T ss_pred CCCCCCcChHHHhhhCCcccEEecCCCccccc------cc--cccCCCCCEEECCCC-CCCCC-CHh-HcCCCCccEEEe
Confidence 333111 222222 455566666666555542 11 113455666666543 44444 322 445556666666
Q ss_pred ecCcccceeeccCCCCcCcccccCCccCeeeccccc
Q 044144 265 RFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLP 300 (356)
Q Consensus 265 ~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~ 300 (356)
++|. +..+ +..... +++|+.|++.+++
T Consensus 222 s~N~-l~~l--p~~l~~------l~~L~~L~l~~N~ 248 (487)
T 3oja_A 222 RNNK-LVLI--EKALRF------SQNLEHFDLRGNG 248 (487)
T ss_dssp TTSC-CCEE--CTTCCC------CTTCCEEECTTCC
T ss_pred cCCc-Cccc--chhhcc------CCCCCEEEcCCCC
Confidence 5544 4333 122222 4555556555543
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.42 E-value=3e-12 Score=126.81 Aligned_cols=226 Identities=15% Similarity=0.089 Sum_probs=135.4
Q ss_pred CcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccccccccccc
Q 044144 3 NNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVE 82 (356)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 82 (356)
++|+.|++.++. ++.+ +. .+++|++|++++| +++.+.. .+++|++|+++++ .++.++.
T Consensus 61 ~~L~~L~L~~N~-l~~l-p~----~l~~L~~L~Ls~N-~l~~lp~--------~l~~L~~L~Ls~N-~l~~l~~------ 118 (622)
T 3g06_A 61 AHITTLVIPDNN-LTSL-PA----LPPELRTLEVSGN-QLTSLPV--------LPPGLLELSIFSN-PLTHLPA------ 118 (622)
T ss_dssp TTCSEEEECSCC-CSCC-CC----CCTTCCEEEECSC-CCSCCCC--------CCTTCCEEEECSC-CCCCCCC------
T ss_pred CCCcEEEecCCC-CCCC-CC----cCCCCCEEEcCCC-cCCcCCC--------CCCCCCEEECcCC-cCCCCCC------
Confidence 467888887763 3332 11 5788888888887 4654411 5677888877774 4554432
Q ss_pred CCCCccEEEEccCCCccccCc-hhhhhccccccccccchhhhhccccc-------cc-CcccccccccccEEecCCCCCc
Q 044144 83 SFNELKIIQAYNCDKLSNIFW-LSTVVNHSSTVVNCSKMKEIFAIGEE-------VD-NSIEKIELAQLRYLSLGNLPEV 153 (356)
Q Consensus 83 ~l~~L~~L~l~~c~~l~~~~~-l~~ll~~L~~i~~c~~L~~l~~~~~~-------~~-~~~~~~~~~~L~~L~l~~~~~l 153 (356)
.+++|+.|+++++ ++..++. ++.+ +.| .++++ .+..++..... .+ ...-...+++|+.|+++++. +
T Consensus 119 ~l~~L~~L~L~~N-~l~~lp~~l~~L-~~L-~Ls~N-~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~-l 193 (622)
T 3g06_A 119 LPSGLCKLWIFGN-QLTSLPVLPPGL-QEL-SVSDN-QLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ-L 193 (622)
T ss_dssp CCTTCCEEECCSS-CCSCCCCCCTTC-CEE-ECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSC-C
T ss_pred CCCCcCEEECCCC-CCCcCCCCCCCC-CEE-ECcCC-cCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCC-C
Confidence 3466777777665 3444432 2333 444 44444 22222210000 00 00000123556666665532 3
Q ss_pred ceeecCCCCCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCc
Q 044144 154 TSFCREVKTPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNL 233 (356)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L 233 (356)
+.++. ....++.|.++++.-..++. .+++|+.|++++|+++. +|. .+++|
T Consensus 194 ~~l~~-----------------~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~------lp~----~l~~L 243 (622)
T 3g06_A 194 ASLPT-----------------LPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTS------LPV----LPSEL 243 (622)
T ss_dssp SCCCC-----------------CCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSC------CCC----CCTTC
T ss_pred CCCCC-----------------ccchhhEEECcCCcccccCC---CCCCCCEEEccCCccCc------CCC----CCCcC
Confidence 32221 23447778877776444442 35899999999998877 342 56899
Q ss_pred cEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccc
Q 044144 234 TRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLP 300 (356)
Q Consensus 234 ~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~ 300 (356)
+.|+++++ +++.+ |. .+++|+.|++++|. +..+ +..... +++|+.|++.+++
T Consensus 244 ~~L~Ls~N-~L~~l-p~----~~~~L~~L~Ls~N~-L~~l--p~~l~~------l~~L~~L~L~~N~ 295 (622)
T 3g06_A 244 KELMVSGN-RLTSL-PM----LPSGLLSLSVYRNQ-LTRL--PESLIH------LSSETTVNLEGNP 295 (622)
T ss_dssp CEEECCSS-CCSCC-CC----CCTTCCEEECCSSC-CCSC--CGGGGG------SCTTCEEECCSCC
T ss_pred cEEECCCC-CCCcC-Cc----ccccCcEEeCCCCC-CCcC--CHHHhh------ccccCEEEecCCC
Confidence 99999885 78777 64 56899999999985 6655 233444 8999999999885
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.42 E-value=8.7e-12 Score=128.36 Aligned_cols=277 Identities=17% Similarity=0.151 Sum_probs=140.6
Q ss_pred CcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccccccccccc
Q 044144 3 NNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVE 82 (356)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 82 (356)
++++.|++++.. +..+ .+..+.++++|++|++++|.....+ .+..+..+++|++|+++++. +..+.... ..
T Consensus 24 ~~l~~LdLs~N~-i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i----~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~--~~ 94 (844)
T 3j0a_A 24 NTTERLLLSFNY-IRTV-TASSFPFLEQLQLLELGSQYTPLTI----DKEAFRNLPNLRILDLGSSK-IYFLHPDA--FQ 94 (844)
T ss_dssp TTCCEEEEESCC-CCEE-CSSSCSSCCSCSEEEECTTCCCCEE----CTTTTSSCTTCCEEECTTCC-CCEECTTS--SC
T ss_pred CCcCEEECCCCc-CCcc-ChhHCcccccCeEEeCCCCCCcccc----CHHHhcCCCCCCEEECCCCc-CcccCHhH--cc
Confidence 567788887653 3333 3345567888888888888555544 12356677888888888853 44442211 24
Q ss_pred CCCCccEEEEccCCCccccC------chhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCccee
Q 044144 83 SFNELKIIQAYNCDKLSNIF------WLSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSF 156 (356)
Q Consensus 83 ~l~~L~~L~l~~c~~l~~~~------~l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 156 (356)
.+++|++|++++|.--...+ .+..+ +.| .++++.-....+ ...+..+++|++|+++++. ++..
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L-~~L-~Ls~N~l~~~~~--------~~~~~~L~~L~~L~Ls~N~-i~~~ 163 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKAL-TRL-DLSKNQIRSLYL--------HPSFGKLNSLKSIDFSSNQ-IFLV 163 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSC-CEE-EEESCCCCCCCC--------CGGGGTCSSCCEEEEESSC-CCCC
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCC-CEE-ECCCCccccccc--------chhHhhCCCCCEEECCCCc-CCee
Confidence 57888888888874322222 12222 333 444443211110 1134567778888777642 2211
Q ss_pred ecCCCCCCCCCCCCCCccccc--cccccceeecCCc-cccccccccCC------CcCeEEecceeeeEE-----------
Q 044144 157 CREVKTPSASPNRPASQEEST--TTYSSSEITLDTS-TLLFNEKVALP------NLEALEISAINVDKI----------- 216 (356)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~--~~l~~l~i~~~~~-~~l~~~~~~l~------~L~~L~l~~~~l~~~----------- 216 (356)
....+ ..+ ..++.+.++.+.- ...+..+..++ +|+.|++.+|.++..
T Consensus 164 ~~~~l-------------~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 164 CEHEL-------------EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp CSGGG-------------HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred CHHHc-------------ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 11000 011 2344444444431 11122222222 256666655532210
Q ss_pred ----------------cccCC---CCCCCCCC--CcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeec
Q 044144 217 ----------------WHYNQ---IPAAVFPR--FQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIIS 275 (356)
Q Consensus 217 ----------------~~~~~---~p~~~~~~--l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~ 275 (356)
+.... .....+.. .++|+.|+++++ .+..+ +...+..+++|+.|++.++. +..+.
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-i~~~~- 306 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHG-FVFSL-NSRVFETLKDLKVLNLAYNK-INKIA- 306 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTC-CCCEE-CSCCSSSCCCCCEEEEESCC-CCEEC-
T ss_pred ccccceecccccccccccccccCCCChhhhhccccCCccEEECCCC-ccccc-ChhhhhcCCCCCEEECCCCc-CCCCC-
Confidence 00000 00011222 378999999885 56666 45667889999999999986 65553
Q ss_pred cCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeecc
Q 044144 276 ENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFR 324 (356)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~ 324 (356)
+..... +++|++|++.++ +++.+.... +..+++|+.|++.+
T Consensus 307 ~~~~~~------l~~L~~L~Ls~N-~l~~~~~~~-~~~l~~L~~L~L~~ 347 (844)
T 3j0a_A 307 DEAFYG------LDNLQVLNLSYN-LLGELYSSN-FYGLPKVAYIDLQK 347 (844)
T ss_dssp TTTTTT------CSSCCEEEEESC-CCSCCCSCS-CSSCTTCCEEECCS
T ss_pred hHHhcC------CCCCCEEECCCC-CCCccCHHH-hcCCCCCCEEECCC
Confidence 222332 556666666554 333332211 13344455544444
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.41 E-value=1.8e-13 Score=124.80 Aligned_cols=266 Identities=16% Similarity=0.171 Sum_probs=173.3
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccc
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKV 81 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 81 (356)
+++|+.|++.++. +... .+..+..+++|++|+++++ .++.+ ..+..+++|++|+++++ .++.++
T Consensus 33 ~~~L~~L~L~~n~-l~~~-~~~~~~~l~~L~~L~Ls~n-~l~~~------~~~~~l~~L~~L~Ls~n-~l~~l~------ 96 (317)
T 3o53_A 33 AWNVKELDLSGNP-LSQI-SAADLAPFTKLELLNLSSN-VLYET------LDLESLSTLRTLDLNNN-YVQELL------ 96 (317)
T ss_dssp GGGCSEEECTTSC-CCCC-CHHHHTTCTTCCEEECTTS-CCEEE------EEETTCTTCCEEECCSS-EEEEEE------
T ss_pred CCCCCEEECcCCc-cCcC-CHHHhhCCCcCCEEECCCC-cCCcc------hhhhhcCCCCEEECcCC-cccccc------
Confidence 4578999998864 3333 2234568999999999998 56654 23677899999999995 465553
Q ss_pred cCCCCccEEEEccCCCccccC--chhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecC
Q 044144 82 ESFNELKIIQAYNCDKLSNIF--WLSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCRE 159 (356)
Q Consensus 82 ~~l~~L~~L~l~~c~~l~~~~--~l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 159 (356)
..++|++|+++++. +..++ .++.+ +.| .++++.- ..++. ..+..+++|+.|+++++. ++.....
T Consensus 97 -~~~~L~~L~l~~n~-l~~~~~~~~~~L-~~L-~l~~N~l-~~~~~--------~~~~~l~~L~~L~Ls~N~-l~~~~~~ 162 (317)
T 3o53_A 97 -VGPSIETLHAANNN-ISRVSCSRGQGK-KNI-YLANNKI-TMLRD--------LDEGCRSRVQYLDLKLNE-IDTVNFA 162 (317)
T ss_dssp -ECTTCCEEECCSSC-CSEEEECCCSSC-EEE-ECCSSCC-CSGGG--------BCTGGGSSEEEEECTTSC-CCEEEGG
T ss_pred -CCCCcCEEECCCCc-cCCcCccccCCC-CEE-ECCCCCC-CCccc--------hhhhccCCCCEEECCCCC-CCcccHH
Confidence 24789999998864 33332 13344 555 6665532 22221 124467889999998853 4443322
Q ss_pred CCCCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeec
Q 044144 160 VKTPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVW 239 (356)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~ 239 (356)
.+. ..+..++.|.++.+.-..++ ....+++|+.|++++|+++.+ |.. +..+++|+.|+++
T Consensus 163 ~~~------------~~l~~L~~L~L~~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~l------~~~-~~~l~~L~~L~L~ 222 (317)
T 3o53_A 163 ELA------------ASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFM------GPE-FQSAAGVTWISLR 222 (317)
T ss_dssp GGG------------GGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEECCSSCCCEE------CGG-GGGGTTCSEEECT
T ss_pred HHh------------hccCcCCEEECCCCcCcccc-cccccccCCEEECCCCcCCcc------hhh-hcccCcccEEECc
Confidence 111 02345788888777644443 333589999999999988873 321 6678999999998
Q ss_pred cCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccE
Q 044144 240 HCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEI 319 (356)
Q Consensus 240 ~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~ 319 (356)
++ .++.+ |. .+..+++|+.|++++++-.... .+..... +++|+.|.+.+++.++...... ...+....
T Consensus 223 ~N-~l~~l-~~-~~~~l~~L~~L~l~~N~~~~~~-~~~~~~~------~~~L~~l~l~~~~~l~~~~~~~--~~~~~~~~ 290 (317)
T 3o53_A 223 NN-KLVLI-EK-ALRFSQNLEHFDLRGNGFHCGT-LRDFFSK------NQRVQTVAKQTVKKLTGQNEEE--CTVPTLGH 290 (317)
T ss_dssp TS-CCCEE-CT-TCCCCTTCCEEECTTCCCBHHH-HHHHHHT------CHHHHHHHHHHHHHHHSSSSCC--CSSTTCEE
T ss_pred CC-cccch-hh-HhhcCCCCCEEEccCCCccCcC-HHHHHhc------cccceEEECCCchhccCCchhc--cCCCceec
Confidence 85 77776 64 4577899999999998732111 1222223 7889999999888888765543 33444555
Q ss_pred EeeccCcCcc
Q 044144 320 FSVFRCDKLK 329 (356)
Q Consensus 320 L~i~~C~~l~ 329 (356)
.....|..+.
T Consensus 291 ~~~~cc~~l~ 300 (317)
T 3o53_A 291 YGAYCCEDLP 300 (317)
T ss_dssp ETTEEEBCCT
T ss_pred ccceeeccCC
Confidence 4455566654
No 61
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.41 E-value=7e-12 Score=112.77 Aligned_cols=200 Identities=16% Similarity=0.145 Sum_probs=111.6
Q ss_pred cccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCchh
Q 044144 26 EGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFWLS 105 (356)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~l~ 105 (356)
..+++++++++.++ +++.++ .+.+++++.|++++. .+..++... ...+++|+.|+++++. +..++.
T Consensus 7 ~~l~~l~~l~~~~~-~l~~ip-------~~~~~~l~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~-- 72 (290)
T 1p9a_G 7 SKVASHLEVNCDKR-NLTALP-------PDLPKDTTILHLSEN-LLYTFSLAT--LMPYTRLTQLNLDRAE-LTKLQV-- 72 (290)
T ss_dssp ECSTTCCEEECTTS-CCSSCC-------SCCCTTCCEEECTTS-CCSEEEGGG--GTTCTTCCEEECTTSC-CCEEEC--
T ss_pred cccCCccEEECCCC-CCCcCC-------CCCCCCCCEEEcCCC-cCCccCHHH--hhcCCCCCEEECCCCc-cCcccC--
Confidence 46777788877765 555441 122367788888774 355443221 2346777777777642 221110
Q ss_pred hhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCcccccccccccee
Q 044144 106 TVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEI 185 (356)
Q Consensus 106 ~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i 185 (356)
...+++|++|++++. .++.+
T Consensus 73 ------------------------------~~~l~~L~~L~Ls~N-~l~~l----------------------------- 92 (290)
T 1p9a_G 73 ------------------------------DGTLPVLGTLDLSHN-QLQSL----------------------------- 92 (290)
T ss_dssp ------------------------------CSCCTTCCEEECCSS-CCSSC-----------------------------
T ss_pred ------------------------------CCCCCcCCEEECCCC-cCCcC-----------------------------
Confidence 123577888888774 23322
Q ss_pred ecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEe
Q 044144 186 TLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVR 265 (356)
Q Consensus 186 ~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~ 265 (356)
+..+..+++|+.|++.+++++. +|...|..+++|+.|+++++ ++..+ +...+..+++|+.|+++
T Consensus 93 --------~~~~~~l~~L~~L~l~~N~l~~------l~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 93 --------PLLGQTLPALTVLDVSFNRLTS------LPLGALRGLGELQELYLKGN-ELKTL-PPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp --------CCCTTTCTTCCEEECCSSCCCC------CCSSTTTTCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECT
T ss_pred --------chhhccCCCCCEEECCCCcCcc------cCHHHHcCCCCCCEEECCCC-CCCcc-ChhhcccccCCCEEECC
Confidence 2223445666777776666655 33334556666777776653 55555 54555566667777776
Q ss_pred cCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 266 FCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 266 ~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
++. ++.+. +..... +++|++|++.++ +++.++... ...++|+.+++.++|
T Consensus 157 ~N~-l~~l~-~~~~~~------l~~L~~L~L~~N-~l~~ip~~~--~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 157 NNN-LTELP-AGLLNG------LENLDTLLLQEN-SLYTIPKGF--FGSHLLPFAFLHGNP 206 (290)
T ss_dssp TSC-CSCCC-TTTTTT------CTTCCEEECCSS-CCCCCCTTT--TTTCCCSEEECCSCC
T ss_pred CCc-CCccC-HHHhcC------cCCCCEEECCCC-cCCccChhh--cccccCCeEEeCCCC
Confidence 654 44442 111222 566666776655 566665554 445566666666443
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.41 E-value=2e-12 Score=117.01 Aligned_cols=112 Identities=16% Similarity=0.196 Sum_probs=58.3
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccc-cchhhhhhhcCCCCeEEEecCcccceeec
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKY-IFSASMIGSLKHLQHLEVRFCEDLQEIIS 275 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~-l~~~~~~~~l~~L~~L~i~~c~~l~~i~~ 275 (356)
+..+++|+.|++.++.++.. +...+..+++|+.|+++++ .+.. ..+ ..+..+++|++|++++|. +..+.
T Consensus 122 ~~~l~~L~~L~l~~n~l~~~------~~~~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~- 191 (306)
T 2z66_A 122 FLSLRNLIYLDISHTHTRVA------FNGIFNGLSSLEVLKMAGN-SFQENFLP-DIFTELRNLTFLDLSQCQ-LEQLS- 191 (306)
T ss_dssp TTTCTTCCEEECTTSCCEEC------STTTTTTCTTCCEEECTTC-EEGGGEEC-SCCTTCTTCCEEECTTSC-CCEEC-
T ss_pred hhhccCCCEEECCCCcCCcc------chhhcccCcCCCEEECCCC-ccccccch-hHHhhCcCCCEEECCCCC-cCCcC-
Confidence 34456666666666655542 1112445666666666654 3332 212 344556666666666664 44432
Q ss_pred cCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 276 ENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
+..... +++|++|++.++ .++.++... +..+++|+.|++.+|.
T Consensus 192 ~~~~~~------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 192 PTAFNS------LSSLQVLNMSHN-NFFSLDTFP-YKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TTTTTT------CTTCCEEECTTS-CCSBCCSGG-GTTCTTCCEEECTTSC
T ss_pred HHHhcC------CCCCCEEECCCC-ccCccChhh-ccCcccCCEeECCCCC
Confidence 222222 566666666665 444443322 1445666666666654
No 63
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.39 E-value=2.5e-12 Score=116.76 Aligned_cols=59 Identities=8% Similarity=0.073 Sum_probs=41.2
Q ss_pred cccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCC
Q 044144 26 EGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCD 96 (356)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~ 96 (356)
..+++|++|++.++ +++.+ ..+..+++|++|+++++ .+..++. ...+++|++|+++++.
T Consensus 38 ~~l~~L~~L~l~~~-~i~~l------~~~~~l~~L~~L~L~~n-~i~~~~~----~~~l~~L~~L~L~~n~ 96 (308)
T 1h6u_A 38 ADLDGITTLSAFGT-GVTTI------EGVQYLNNLIGLELKDN-QITDLAP----LKNLTKITELELSGNP 96 (308)
T ss_dssp HHHHTCCEEECTTS-CCCCC------TTGGGCTTCCEEECCSS-CCCCCGG----GTTCCSCCEEECCSCC
T ss_pred HHcCCcCEEEeeCC-CccCc------hhhhccCCCCEEEccCC-cCCCChh----HccCCCCCEEEccCCc
Confidence 35788888888887 55544 24566788888888885 4555543 3567888888888764
No 64
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.39 E-value=8.1e-14 Score=127.77 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=58.5
Q ss_pred CcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccccccccccc
Q 044144 3 NNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVE 82 (356)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 82 (356)
++++.|++.+.. +..... ....+++|++|++++|. +.. .........+++|++|+++++. +....... ..
T Consensus 70 ~~l~~L~l~~n~-l~~~~~--~~~~~~~L~~L~L~~~~-l~~---~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~--l~ 139 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLA--EHFSPFRVQHMDLSNSV-IEV---STLHGILSQCSKLQNLSLEGLR-LSDPIVNT--LA 139 (336)
T ss_dssp TTCSEEECTTCE-ECSCCC--SCCCCBCCCEEECTTCE-ECH---HHHHHHHTTBCCCSEEECTTCB-CCHHHHHH--HT
T ss_pred ccceEEEcCCcc-ccccch--hhccCCCCCEEEccCCC-cCH---HHHHHHHhhCCCCCEEeCcCcc-cCHHHHHH--Hh
Confidence 567888887653 233222 24478999999999983 431 1112356778999999999974 44321111 14
Q ss_pred CCCCccEEEEccCCCccc
Q 044144 83 SFNELKIIQAYNCDKLSN 100 (356)
Q Consensus 83 ~l~~L~~L~l~~c~~l~~ 100 (356)
.+++|++|++++|..+..
T Consensus 140 ~~~~L~~L~L~~~~~l~~ 157 (336)
T 2ast_B 140 KNSNLVRLNLSGCSGFSE 157 (336)
T ss_dssp TCTTCSEEECTTCBSCCH
T ss_pred cCCCCCEEECCCCCCCCH
Confidence 589999999999976663
No 65
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.39 E-value=1.9e-14 Score=142.13 Aligned_cols=89 Identities=10% Similarity=0.090 Sum_probs=50.8
Q ss_pred CCcceEEeeCcccCceeeccc-------------cCccccCCCcEEEEecCCCceEeecCCcccccc-cCcccceeeccc
Q 044144 2 INNVECLWLDKLQGIENVLFN-------------LDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACD-AFPLLESLILHN 67 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~-------------~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~-~~~~L~~L~l~~ 67 (356)
+++++.|++.++..+.+.... .....+++|++|++++|. +... ....+. .+++|++|++.+
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~----~~~~l~~~~~~L~~L~L~~ 139 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDD----CLELIAKSFKNFKVLVLSS 139 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHH----HHHHHHHHCTTCCEEEEES
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHH----HHHHHHHhCCCCcEEeCCC
Confidence 678888888887655433211 012357788888888773 3211 111222 467888888887
Q ss_pred cccccccccccccccCCCCccEEEEccCC
Q 044144 68 LINMERIWIDQLKVESFNELKIIQAYNCD 96 (356)
Q Consensus 68 ~~~l~~l~~~~~~~~~l~~L~~L~l~~c~ 96 (356)
|..+........ ...+++|++|++++|.
T Consensus 140 ~~~~~~~~l~~~-~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 140 CEGFSTDGLAAI-AATCRNLKELDLRESD 167 (594)
T ss_dssp CEEEEHHHHHHH-HHHCTTCCEEECTTCE
T ss_pred cCCCCHHHHHHH-HHhCCCCCEEeCcCCc
Confidence 765544211111 1246777777777765
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.38 E-value=1.7e-11 Score=108.94 Aligned_cols=35 Identities=9% Similarity=0.115 Sum_probs=17.2
Q ss_pred cccceeeccccccccccccccccccCCCCccEEEEccC
Q 044144 58 PLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNC 95 (356)
Q Consensus 58 ~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c 95 (356)
+++++|+++++ +++.++... ...+++|++|+++++
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~n 71 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSKA--FHRLTKLRLLYLNDN 71 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTTS--SSSCTTCCEEECCSS
T ss_pred CCCCEEECcCC-CCCeeCHHH--hcCCCCCCEEECCCC
Confidence 45666666653 344443211 133566666666554
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.38 E-value=4e-14 Score=139.78 Aligned_cols=89 Identities=13% Similarity=0.038 Sum_probs=51.2
Q ss_pred CCcceEEeeCcccCceeecc-ccCc------------cccCCCcEEEEecCCCceEeecCCccccccc-Ccc-cceeecc
Q 044144 2 INNVECLWLDKLQGIENVLF-NLDT------------EGFSQLKLLWVQNNPDFFCIVDSRAMVACDA-FPL-LESLILH 66 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~-~~~~------------~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~-~~~-L~~L~l~ 66 (356)
+++++.|++.+++.+.+... +..+ ..+++|++|++++| .+... ....+.. +++ |++|++.
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~-~i~~~----~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDL----DLDRLAKARADDLETLKLD 146 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESC-BCCHH----HHHHHHHHHGGGCCEEEEE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeecc-EecHH----HHHHHHHhccccCcEEECc
Confidence 67899999988765432200 0111 16889999999888 34311 1112222 444 8888888
Q ss_pred ccccccccccccccccCCCCccEEEEccCC
Q 044144 67 NLINMERIWIDQLKVESFNELKIIQAYNCD 96 (356)
Q Consensus 67 ~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~ 96 (356)
+|..+........ ...+++|++|++++|.
T Consensus 147 ~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~ 175 (592)
T 3ogk_B 147 KCSGFTTDGLLSI-VTHCRKIKTLLMEESS 175 (592)
T ss_dssp SCEEEEHHHHHHH-HHHCTTCSEEECTTCE
T ss_pred CCCCcCHHHHHHH-HhhCCCCCEEECcccc
Confidence 8775432211111 1246888888888874
No 68
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.35 E-value=6e-12 Score=112.08 Aligned_cols=179 Identities=18% Similarity=0.223 Sum_probs=100.9
Q ss_pred ccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCch
Q 044144 25 TEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFWL 104 (356)
Q Consensus 25 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~l 104 (356)
...+++|+.|++.++ .++.+ ..+..+++|++|+++++. ++.++ ....+++|++|+++++ ++..++.
T Consensus 37 ~~~l~~L~~L~l~~~-~i~~~------~~l~~l~~L~~L~l~~n~-l~~~~----~l~~l~~L~~L~L~~n-~l~~~~~- 102 (272)
T 3rfs_A 37 QNELNSIDQIIANNS-DIKSV------QGIQYLPNVRYLALGGNK-LHDIS----ALKELTNLTYLILTGN-QLQSLPN- 102 (272)
T ss_dssp HHHHTTCCEEECTTS-CCCCC------TTGGGCTTCCEEECTTSC-CCCCG----GGTTCTTCCEEECTTS-CCCCCCT-
T ss_pred cccccceeeeeeCCC-Ccccc------cccccCCCCcEEECCCCC-CCCch----hhcCCCCCCEEECCCC-ccCccCh-
Confidence 346778888888777 45433 345667888888888753 54442 2245778888888776 2332221
Q ss_pred hhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccce
Q 044144 105 STVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSE 184 (356)
Q Consensus 105 ~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 184 (356)
. .+..+++|++|+++++. ++.++.
T Consensus 103 ~-----------------------------~~~~l~~L~~L~L~~n~-l~~~~~-------------------------- 126 (272)
T 3rfs_A 103 G-----------------------------VFDKLTNLKELVLVENQ-LQSLPD-------------------------- 126 (272)
T ss_dssp T-----------------------------TTTTCTTCCEEECTTSC-CCCCCT--------------------------
T ss_pred h-----------------------------HhcCCcCCCEEECCCCc-CCccCH--------------------------
Confidence 0 01234667777776642 221111
Q ss_pred eecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEE
Q 044144 185 ITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEV 264 (356)
Q Consensus 185 i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i 264 (356)
..+..+++|+.|++.+|+++. +|...+..+++|+.|+++++ ++..+ +...+..+++|++|++
T Consensus 127 ----------~~~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 127 ----------GVFDKLTNLTYLNLAHNQLQS------LPKGVFDKLTNLTELDLSYN-QLQSL-PEGVFDKLTQLKDLRL 188 (272)
T ss_dssp ----------TTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEEC
T ss_pred ----------HHhccCCCCCEEECCCCccCc------cCHHHhccCccCCEEECCCC-CcCcc-CHHHhcCCccCCEEEC
Confidence 112445667777777766554 33323456667777777664 45555 4455566677777777
Q ss_pred ecCcccceeeccCCCCcCcccccCCccCeeecccc
Q 044144 265 RFCEDLQEIISENRADEVIPYFVFPQLTTLILQYL 299 (356)
Q Consensus 265 ~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c 299 (356)
++|. +..+. +..... +++|++|++.++
T Consensus 189 ~~N~-l~~~~-~~~~~~------l~~L~~L~l~~N 215 (272)
T 3rfs_A 189 YQNQ-LKSVP-DGVFDR------LTSLQYIWLHDN 215 (272)
T ss_dssp CSSC-CSCCC-TTTTTT------CTTCCEEECCSS
T ss_pred CCCc-CCccC-HHHHhC------CcCCCEEEccCC
Confidence 7664 44432 122222 566777777665
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.35 E-value=1.7e-11 Score=118.33 Aligned_cols=241 Identities=17% Similarity=0.149 Sum_probs=157.9
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccc
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKV 81 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 81 (356)
+++|+.|++.++. +... .+..+..+++|++|++++| .++.+ ..+..+++|++|+++++ .+..++
T Consensus 33 ~~~L~~L~Ls~n~-l~~~-~~~~~~~l~~L~~L~Ls~N-~l~~~------~~l~~l~~L~~L~Ls~N-~l~~l~------ 96 (487)
T 3oja_A 33 AWNVKELDLSGNP-LSQI-SAADLAPFTKLELLNLSSN-VLYET------LDLESLSTLRTLDLNNN-YVQELL------ 96 (487)
T ss_dssp GGGCCEEECCSSC-CCCC-CGGGGTTCTTCCEEECTTS-CCEEE------EECTTCTTCCEEECCSS-EEEEEE------
T ss_pred CCCccEEEeeCCc-CCCC-CHHHHhCCCCCCEEEeeCC-CCCCC------cccccCCCCCEEEecCC-cCCCCC------
Confidence 3489999998864 3333 3335578999999999998 56654 23778899999999996 466553
Q ss_pred cCCCCccEEEEccCCCccccCc--hhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecC
Q 044144 82 ESFNELKIIQAYNCDKLSNIFW--LSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCRE 159 (356)
Q Consensus 82 ~~l~~L~~L~l~~c~~l~~~~~--l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 159 (356)
..++|+.|+++++. +..++. ++.+ +.| .++++.--...+ ..+..+++|+.|+++++. ++.....
T Consensus 97 -~~~~L~~L~L~~N~-l~~~~~~~l~~L-~~L-~L~~N~l~~~~~---------~~~~~l~~L~~L~Ls~N~-l~~~~~~ 162 (487)
T 3oja_A 97 -VGPSIETLHAANNN-ISRVSCSRGQGK-KNI-YLANNKITMLRD---------LDEGCRSRVQYLDLKLNE-IDTVNFA 162 (487)
T ss_dssp -ECTTCCEEECCSSC-CCCEEECCCSSC-EEE-ECCSSCCCSGGG---------BCGGGGSSEEEEECTTSC-CCEEEGG
T ss_pred -CCCCcCEEECcCCc-CCCCCccccCCC-CEE-ECCCCCCCCCCc---------hhhcCCCCCCEEECCCCC-CCCcChH
Confidence 23799999999874 333321 3444 555 666654222222 134567889999998863 4443322
Q ss_pred CCCCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeec
Q 044144 160 VKTPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVW 239 (356)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~ 239 (356)
.+. ..+..++.|+++.+.-...+ ....+++|+.|++++|+++.+ +|. +..+++|+.|+++
T Consensus 163 ~l~------------~~l~~L~~L~Ls~N~l~~~~-~~~~l~~L~~L~Ls~N~l~~~-----~~~--~~~l~~L~~L~Ls 222 (487)
T 3oja_A 163 ELA------------ASSDTLEHLNLQYNFIYDVK-GQVVFAKLKTLDLSSNKLAFM-----GPE--FQSAAGVTWISLR 222 (487)
T ss_dssp GGG------------GGTTTCCEEECTTSCCCEEE-CCCCCTTCCEEECCSSCCCEE-----CGG--GGGGTTCSEEECT
T ss_pred HHh------------hhCCcccEEecCCCcccccc-ccccCCCCCEEECCCCCCCCC-----CHh--HcCCCCccEEEec
Confidence 110 02345788888877643333 334589999999999988873 233 6688999999998
Q ss_pred cCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccc
Q 044144 240 HCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKL 302 (356)
Q Consensus 240 ~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L 302 (356)
++ .+..+ |. .+..+++|+.|++++++-.-.. .+..... ++.|+.+.+..+..+
T Consensus 223 ~N-~l~~l-p~-~l~~l~~L~~L~l~~N~l~c~~-~~~~~~~------l~~L~~l~~~~~~~~ 275 (487)
T 3oja_A 223 NN-KLVLI-EK-ALRFSQNLEHFDLRGNGFHCGT-LRDFFSK------NQRVQTVAKQTVKKL 275 (487)
T ss_dssp TS-CCCEE-CT-TCCCCTTCCEEECTTCCBCHHH-HHHHHTT------CHHHHHHHHHHHHHH
T ss_pred CC-cCccc-ch-hhccCCCCCEEEcCCCCCcCcc-hHHHHHh------CCCCcEEeccccccc
Confidence 84 67776 63 3677899999999998732111 1122222 667777777544333
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.35 E-value=3.8e-14 Score=139.96 Aligned_cols=39 Identities=13% Similarity=0.031 Sum_probs=23.2
Q ss_pred CCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcC
Q 044144 288 FPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDK 327 (356)
Q Consensus 288 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~ 327 (356)
+++|++|.+.+|. +++.........+++|++|++.+|+-
T Consensus 455 ~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~ 493 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPF 493 (594)
T ss_dssp CTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred chhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCC
Confidence 5566666666653 33322211113478899999998874
No 71
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.34 E-value=2.1e-13 Score=124.94 Aligned_cols=196 Identities=17% Similarity=0.060 Sum_probs=105.7
Q ss_pred ceEEeeCcccCceeeccccCcccc--CCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccc--ccccccc
Q 044144 5 VECLWLDKLQGIENVLFNLDTEGF--SQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMER--IWIDQLK 80 (356)
Q Consensus 5 l~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~ 80 (356)
.+.+++.+..-. +.....+ ++++.|++.++ .+... ......+++|++|+++++. +.. ++..
T Consensus 49 ~~~l~l~~~~~~-----~~~~~~~~~~~l~~L~l~~n-~l~~~-----~~~~~~~~~L~~L~L~~~~-l~~~~~~~~--- 113 (336)
T 2ast_B 49 WQTLDLTGKNLH-----PDVTGRLLSQGVIAFRCPRS-FMDQP-----LAEHFSPFRVQHMDLSNSV-IEVSTLHGI--- 113 (336)
T ss_dssp SSEEECTTCBCC-----HHHHHHHHHTTCSEEECTTC-EECSC-----CCSCCCCBCCCEEECTTCE-ECHHHHHHH---
T ss_pred heeeccccccCC-----HHHHHhhhhccceEEEcCCc-ccccc-----chhhccCCCCCEEEccCCC-cCHHHHHHH---
Confidence 456666553211 1123345 89999999887 34322 2335578999999999975 433 3222
Q ss_pred ccCCCCccEEEEccCCCcccc-----Cchhhhhccccccccccchhh--hhcccccccCcccccccccccEEecCCCCCc
Q 044144 81 VESFNELKIIQAYNCDKLSNI-----FWLSTVVNHSSTVVNCSKMKE--IFAIGEEVDNSIEKIELAQLRYLSLGNLPEV 153 (356)
Q Consensus 81 ~~~l~~L~~L~l~~c~~l~~~-----~~l~~ll~~L~~i~~c~~L~~--l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 153 (356)
...+++|++|++++|. +... ..++.+ +.| .+++|..+.. ++. .+..+++|++|++++|+.+
T Consensus 114 ~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L-~~L-~L~~~~~l~~~~l~~---------~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 114 LSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNL-VRL-NLSGCSGFSEFALQT---------LLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp HTTBCCCSEEECTTCB-CCHHHHHHHTTCTTC-SEE-ECTTCBSCCHHHHHH---------HHHHCTTCCEEECCCCTTC
T ss_pred HhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCC-CEE-ECCCCCCCCHHHHHH---------HHhcCCCCCEEcCCCCCCc
Confidence 2558999999999984 3321 112333 444 6666644432 221 1234567777777766444
Q ss_pred ceeecCCCCCCCCCCCCCCccccccccccceeecCCccccccccccCC-CcCeEEecce--eeeEEcccCCCCCCCCCCC
Q 044144 154 TSFCREVKTPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALP-NLEALEISAI--NVDKIWHYNQIPAAVFPRF 230 (356)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~-~L~~L~l~~~--~l~~~~~~~~~p~~~~~~l 230 (356)
+... ++..+..++ +|++|++.+| .+++.. +|. .+..+
T Consensus 182 ~~~~-----------------------------------~~~~~~~l~~~L~~L~l~~~~~~~~~~~----l~~-~~~~~ 221 (336)
T 2ast_B 182 TEKH-----------------------------------VQVAVAHVSETITQLNLSGYRKNLQKSD----LST-LVRRC 221 (336)
T ss_dssp CHHH-----------------------------------HHHHHHHSCTTCCEEECCSCGGGSCHHH----HHH-HHHHC
T ss_pred ChHH-----------------------------------HHHHHHhcccCCCEEEeCCCcccCCHHH----HHH-HHhhC
Confidence 3210 222234455 6666666665 232100 111 12345
Q ss_pred cCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCc
Q 044144 231 QNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 231 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 268 (356)
++|+.|++++|..+.+..+ ..+..+++|++|++++|.
T Consensus 222 ~~L~~L~l~~~~~l~~~~~-~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 222 PNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp TTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCT
T ss_pred CCCCEEeCCCCCcCCHHHH-HHHhCCCCCCEeeCCCCC
Confidence 6666666666654444312 334555666666666665
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.33 E-value=4.9e-11 Score=107.22 Aligned_cols=198 Identities=16% Similarity=0.181 Sum_probs=124.7
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccc
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKV 81 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 81 (356)
+++++.+++.+. ++..+.. .-.++++.|+++++ .++.+ ....+..+++|++|++++. .++.++..
T Consensus 9 l~~l~~l~~~~~-~l~~ip~----~~~~~l~~L~L~~N-~l~~~----~~~~~~~l~~L~~L~L~~n-~l~~~~~~---- 73 (290)
T 1p9a_G 9 VASHLEVNCDKR-NLTALPP----DLPKDTTILHLSEN-LLYTF----SLATLMPYTRLTQLNLDRA-ELTKLQVD---- 73 (290)
T ss_dssp STTCCEEECTTS-CCSSCCS----CCCTTCCEEECTTS-CCSEE----EGGGGTTCTTCCEEECTTS-CCCEEECC----
T ss_pred cCCccEEECCCC-CCCcCCC----CCCCCCCEEEcCCC-cCCcc----CHHHhhcCCCCCEEECCCC-ccCcccCC----
Confidence 566777877653 3443321 12478999999998 56655 2245678899999999994 57666432
Q ss_pred cCCCCccEEEEccCCCccccCchhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCC
Q 044144 82 ESFNELKIIQAYNCDKLSNIFWLSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVK 161 (356)
Q Consensus 82 ~~l~~L~~L~l~~c~~l~~~~~l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 161 (356)
..+++|+.|+++++ ++..++. .+..+++|+.|.+++. .++.++.
T Consensus 74 ~~l~~L~~L~Ls~N-~l~~l~~-------------------------------~~~~l~~L~~L~l~~N-~l~~l~~--- 117 (290)
T 1p9a_G 74 GTLPVLGTLDLSHN-QLQSLPL-------------------------------LGQTLPALTVLDVSFN-RLTSLPL--- 117 (290)
T ss_dssp SCCTTCCEEECCSS-CCSSCCC-------------------------------CTTTCTTCCEEECCSS-CCCCCCS---
T ss_pred CCCCcCCEEECCCC-cCCcCch-------------------------------hhccCCCCCEEECCCC-cCcccCH---
Confidence 46899999999986 3332221 0224577788888764 2332221
Q ss_pred CCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccC
Q 044144 162 TPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHC 241 (356)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c 241 (356)
..+..+++|+.|.+.+|+++. +|...+..+++|+.|++++
T Consensus 118 ---------------------------------~~~~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~L~~- 157 (290)
T 1p9a_G 118 ---------------------------------GALRGLGELQELYLKGNELKT------LPPGLLTPTPKLEKLSLAN- 157 (290)
T ss_dssp ---------------------------------STTTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECTT-
T ss_pred ---------------------------------HHHcCCCCCCEEECCCCCCCc------cChhhcccccCCCEEECCC-
Confidence 123456777777777776665 4443456677777777766
Q ss_pred cCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccc
Q 044144 242 NKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLP 300 (356)
Q Consensus 242 ~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~ 300 (356)
++++.+ +...+..+++|+.|+++++. ++.+ +..... .++|+.|.+.+.|
T Consensus 158 N~l~~l-~~~~~~~l~~L~~L~L~~N~-l~~i--p~~~~~------~~~L~~l~L~~Np 206 (290)
T 1p9a_G 158 NNLTEL-PAGLLNGLENLDTLLLQENS-LYTI--PKGFFG------SHLLPFAFLHGNP 206 (290)
T ss_dssp SCCSCC-CTTTTTTCTTCCEEECCSSC-CCCC--CTTTTT------TCCCSEEECCSCC
T ss_pred CcCCcc-CHHHhcCcCCCCEEECCCCc-CCcc--Chhhcc------cccCCeEEeCCCC
Confidence 366666 65666667777777777765 5444 233332 5567777776543
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.33 E-value=3.4e-11 Score=107.25 Aligned_cols=209 Identities=17% Similarity=0.163 Sum_probs=130.2
Q ss_pred CCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCchhhhh
Q 044144 29 SQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFWLSTVV 108 (356)
Q Consensus 29 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~l~~ll 108 (356)
++|++|+++++ +++.+. ...+..+++|++|+++++ .++.++... ...+++|++|+++++. +..++.
T Consensus 28 ~~l~~L~ls~n-~l~~~~----~~~~~~l~~L~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~L~~n~-l~~~~~----- 93 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLG----SYSFFSFPELQVLDLSRC-EIQTIEDGA--YQSLSHLSTLILTGNP-IQSLAL----- 93 (276)
T ss_dssp TTCCEEECTTC-CCCEEC----TTTTTTCTTCSEEECTTC-CCCEECTTT--TTTCTTCCEEECTTCC-CCEECT-----
T ss_pred CCccEEECCCC-cccccC----HhHhccccCCcEEECCCC-cCCccCHHH--ccCCcCCCEEECCCCc-cCccCh-----
Confidence 46888888887 676651 124567788888888885 455554322 2457888888888763 222110
Q ss_pred ccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceeecC
Q 044144 109 NHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEITLD 188 (356)
Q Consensus 109 ~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~ 188 (356)
..+..+++|++|.+.++. +..+.
T Consensus 94 -------------------------~~~~~l~~L~~L~l~~n~-l~~~~------------------------------- 116 (276)
T 2z62_A 94 -------------------------GAFSGLSSLQKLVAVETN-LASLE------------------------------- 116 (276)
T ss_dssp -------------------------TTTTTCTTCCEEECTTSC-CCCST-------------------------------
T ss_pred -------------------------hhhcCCccccEEECCCCC-ccccC-------------------------------
Confidence 012345778888877653 22111
Q ss_pred CccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCC----eEEE
Q 044144 189 TSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQ----HLEV 264 (356)
Q Consensus 189 ~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~----~L~i 264 (356)
...+..+++|+.|++.+++++.+. +|. .+..+++|+.|+++++ ++..+ +...+..+++|+ .|++
T Consensus 117 -----~~~~~~l~~L~~L~l~~n~l~~~~----l~~-~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 117 -----NFPIGHLKTLKELNVAHNLIQSFK----LPE-YFSNLTNLEHLDLSSN-KIQSI-YCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp -----TCCCTTCTTCCEEECCSSCCCCCC----CCG-GGGGCTTCCEEECCSS-CCCEE-CGGGGHHHHTCTTCCEEEEC
T ss_pred -----chhcccCCCCCEEECcCCccceec----Cch-hhccCCCCCEEECCCC-CCCcC-CHHHhhhhhhccccceeeec
Confidence 112355788888888888666521 222 3567788888888775 56666 445556666666 7888
Q ss_pred ecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeec------cCcCcccc
Q 044144 265 RFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVF------RCDKLKIF 331 (356)
Q Consensus 265 ~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~------~C~~l~~l 331 (356)
+++. +..+. ..... ..+|++|++.++ +++.++... +..+++|+.|++. +|+.++.+
T Consensus 185 s~n~-l~~~~--~~~~~------~~~L~~L~L~~n-~l~~~~~~~-~~~l~~L~~L~l~~N~~~c~c~~l~~l 246 (276)
T 2z62_A 185 SLNP-MNFIQ--PGAFK------EIRLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTNPWDCSCPRIDYL 246 (276)
T ss_dssp CSSC-CCEEC--TTSSC------SCCEEEEECCSS-CCSCCCTTT-TTTCCSCCEEECCSSCBCCCTTTTHHH
T ss_pred CCCc-ccccC--ccccC------CCcccEEECCCC-ceeecCHhH-hcccccccEEEccCCcccccCCchHHH
Confidence 8765 55552 22222 347888888877 577776543 2568888888888 56655544
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.32 E-value=2.8e-11 Score=107.67 Aligned_cols=112 Identities=24% Similarity=0.354 Sum_probs=87.1
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeecc
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISE 276 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~ 276 (356)
+..+++|++|++.+|+++. .+...+..+++|+.|+++++ ++..+ +...+..+++|+.|++++|. +..+. +
T Consensus 105 ~~~l~~L~~L~L~~n~l~~------~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~-~ 174 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQS------LPDGVFDKLTNLTYLNLAHN-QLQSL-PKGVFDKLTNLTELDLSYNQ-LQSLP-E 174 (272)
T ss_dssp TTTCTTCCEEECTTSCCCC------CCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-T
T ss_pred hcCCcCCCEEECCCCcCCc------cCHHHhccCCCCCEEECCCC-ccCcc-CHHHhccCccCCEEECCCCC-cCccC-H
Confidence 3567999999999998876 44434778899999999886 77777 66777889999999999986 65552 2
Q ss_pred CCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 277 NRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 277 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
..... +++|++|++.++ +++.++... +..+++|+.|++.+++
T Consensus 175 ~~~~~------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 175 GVFDK------LTQLKDLRLYQN-QLKSVPDGV-FDRLTSLQYIWLHDNP 216 (272)
T ss_dssp TTTTT------CTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSC
T ss_pred HHhcC------CccCCEEECCCC-cCCccCHHH-HhCCcCCCEEEccCCC
Confidence 22333 789999999987 677776543 2678999999998754
No 75
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.32 E-value=7.2e-11 Score=112.93 Aligned_cols=50 Identities=28% Similarity=0.265 Sum_probs=25.5
Q ss_pred CccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeecccc
Q 044144 232 NLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYL 299 (356)
Q Consensus 232 ~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c 299 (356)
+|+.|+++++ ++..+ |.. +++|+.|++++|. ++.+. . . +++|++|+++++
T Consensus 318 ~L~~L~Ls~N-~l~~l-p~~----~~~L~~L~L~~N~-l~~lp--~---~------l~~L~~L~L~~N 367 (454)
T 1jl5_A 318 SLEELNVSNN-KLIEL-PAL----PPRLERLIASFNH-LAEVP--E---L------PQNLKQLHVEYN 367 (454)
T ss_dssp TCCEEECCSS-CCSCC-CCC----CTTCCEEECCSSC-CSCCC--C---C------CTTCCEEECCSS
T ss_pred cCCEEECCCC-ccccc-ccc----CCcCCEEECCCCc-ccccc--c---h------hhhccEEECCCC
Confidence 5666666552 44443 321 3566666666653 43331 1 1 456666666655
No 76
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.32 E-value=5.3e-12 Score=120.79 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=9.3
Q ss_pred ccccccccEEecCCC
Q 044144 136 KIELAQLRYLSLGNL 150 (356)
Q Consensus 136 ~~~~~~L~~L~l~~~ 150 (356)
+..+++|++|+++++
T Consensus 149 ~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 149 LQNSSFLKIIDVDNN 163 (454)
T ss_dssp CTTCTTCCEEECCSS
T ss_pred cCCCCCCCEEECCCC
Confidence 445566677766664
No 77
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.31 E-value=2.2e-11 Score=112.47 Aligned_cols=249 Identities=16% Similarity=0.163 Sum_probs=161.6
Q ss_pred CcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccccccccccc
Q 044144 3 NNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVE 82 (356)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 82 (356)
++++.|++.+.. +..+ ....+.++++|++|+++++ +++.+ ....+..+++|++|+++++ .++.++... ..
T Consensus 52 ~~L~~L~l~~n~-i~~~-~~~~~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~--~~ 121 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYI-SNSDLQRCVNLQALVLTSN-GINTI----EEDSFSSLGSLEHLDLSYN-YLSNLSSSW--FK 121 (353)
T ss_dssp TTCCEEECTTSC-CCEE-CTTTTTTCTTCCEEECTTS-CCCEE----CTTTTTTCTTCCEEECCSS-CCSSCCHHH--HT
T ss_pred ccCcEEECCCCc-Cccc-CHHHhccCCCCCEEECCCC-ccCcc----CHhhcCCCCCCCEEECCCC-cCCcCCHhH--hC
Confidence 478999998764 4444 3334678999999999998 67765 1234677899999999995 566664431 24
Q ss_pred CCCCccEEEEccCCCccccCc------hhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCccee
Q 044144 83 SFNELKIIQAYNCDKLSNIFW------LSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSF 156 (356)
Q Consensus 83 ~l~~L~~L~l~~c~~l~~~~~------l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 156 (356)
.+++|++|+++++ ++..++. +..+ +.| .++++..+..++. ..+..+++|++|+++++. ++..
T Consensus 122 ~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L-~~L-~l~~n~~~~~~~~--------~~~~~l~~L~~L~l~~n~-l~~~ 189 (353)
T 2z80_A 122 PLSSLTFLNLLGN-PYKTLGETSLFSHLTKL-QIL-RVGNMDTFTKIQR--------KDFAGLTFLEELEIDASD-LQSY 189 (353)
T ss_dssp TCTTCSEEECTTC-CCSSSCSSCSCTTCTTC-CEE-EEEESSSCCEECT--------TTTTTCCEEEEEEEEETT-CCEE
T ss_pred CCccCCEEECCCC-CCcccCchhhhccCCCC-cEE-ECCCCccccccCH--------HHccCCCCCCEEECCCCC-cCcc
Confidence 5899999999987 3444432 2333 455 7777654544432 234567899999998864 3333
Q ss_pred ecCCCCCCCCCCCCCCccccccccccceeecCCccccccc-cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccE
Q 044144 157 CREVKTPSASPNRPASQEESTTTYSSSEITLDTSTLLFNE-KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTR 235 (356)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~-~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~ 235 (356)
....+ ..+..++.+.++.+....++.. ...+++|+.|++.+++++.+.... ++. ....+.++.
T Consensus 190 ~~~~l-------------~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~--~~~~~~l~~ 253 (353)
T 2z80_A 190 EPKSL-------------KSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSE-LST--GETNSLIKK 253 (353)
T ss_dssp CTTTT-------------TTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------CCCCCCE
T ss_pred CHHHH-------------hccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccc-ccc--ccccchhhc
Confidence 22111 1445688888887765444433 345899999999999777631111 221 223566788
Q ss_pred EeeccCcCcccc----chhhhhhhcCCCCeEEEecCcccceeeccCC-CCcCcccccCCccCeeeccccc
Q 044144 236 LIVWHCNKLKYI----FSASMIGSLKHLQHLEVRFCEDLQEIISENR-ADEVIPYFVFPQLTTLILQYLP 300 (356)
Q Consensus 236 L~i~~c~~l~~l----~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~-~~~~~~~~~l~~L~~L~l~~c~ 300 (356)
+++.++ .+.+. +| ..+..+++|++|++++|. +..+. .. ... +++|++|++.+++
T Consensus 254 l~L~~~-~l~~~~l~~l~-~~l~~l~~L~~L~Ls~N~-l~~i~--~~~~~~------l~~L~~L~L~~N~ 312 (353)
T 2z80_A 254 FTFRNV-KITDESLFQVM-KLLNQISGLLELEFSRNQ-LKSVP--DGIFDR------LTSLQKIWLHTNP 312 (353)
T ss_dssp EEEESC-BCCHHHHHHHH-HHHHTCTTCCEEECCSSC-CCCCC--TTTTTT------CTTCCEEECCSSC
T ss_pred cccccc-cccCcchhhhH-HHHhcccCCCEEECCCCC-CCccC--HHHHhc------CCCCCEEEeeCCC
Confidence 888765 33332 13 456788999999999986 66552 32 233 8899999999874
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.29 E-value=3.9e-11 Score=108.85 Aligned_cols=79 Identities=9% Similarity=0.123 Sum_probs=59.6
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccc
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKV 81 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 81 (356)
+++++.|++.++. +..+ . .+..+++|++|++++| .++.+ ..+..+++|++|+++++. ++.++ ..
T Consensus 40 l~~L~~L~l~~~~-i~~l-~--~~~~l~~L~~L~L~~n-~i~~~------~~~~~l~~L~~L~L~~n~-l~~~~----~~ 103 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTI-E--GVQYLNNLIGLELKDN-QITDL------APLKNLTKITELELSGNP-LKNVS----AI 103 (308)
T ss_dssp HHTCCEEECTTSC-CCCC-T--TGGGCTTCCEEECCSS-CCCCC------GGGTTCCSCCEEECCSCC-CSCCG----GG
T ss_pred cCCcCEEEeeCCC-ccCc-h--hhhccCCCCEEEccCC-cCCCC------hhHccCCCCCEEEccCCc-CCCch----hh
Confidence 4678999998873 4433 2 4568999999999998 66654 227788999999999964 66663 23
Q ss_pred cCCCCccEEEEccCC
Q 044144 82 ESFNELKIIQAYNCD 96 (356)
Q Consensus 82 ~~l~~L~~L~l~~c~ 96 (356)
..+++|++|+++++.
T Consensus 104 ~~l~~L~~L~l~~n~ 118 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQ 118 (308)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred cCCCCCCEEECCCCC
Confidence 568999999999874
No 79
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.28 E-value=6.7e-11 Score=105.08 Aligned_cols=180 Identities=20% Similarity=0.254 Sum_probs=112.3
Q ss_pred CCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCchhhhh
Q 044144 29 SQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFWLSTVV 108 (356)
Q Consensus 29 ~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~l~~ll 108 (356)
++++.|+++++ +++.+ ....+..+++|++|+++++ .++.++.+.+ ..+++|++|+++++. +..++. .
T Consensus 37 ~~l~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~--~~l~~L~~L~l~~n~-l~~~~~-~--- 103 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSL----PSKAFHRLTKLRLLYLNDN-KLQTLPAGIF--KELKNLETLWVTDNK-LQALPI-G--- 103 (270)
T ss_dssp TTCSEEECCSS-CCSCC----CTTSSSSCTTCCEEECCSS-CCSCCCTTTT--SSCTTCCEEECCSSC-CCCCCT-T---
T ss_pred CCCCEEECcCC-CCCee----CHHHhcCCCCCCEEECCCC-ccCeeChhhh--cCCCCCCEEECCCCc-CCcCCH-h---
Confidence 57999999998 56654 1235678899999999984 5666654321 347899999998863 332221 0
Q ss_pred ccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceeecC
Q 044144 109 NHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEITLD 188 (356)
Q Consensus 109 ~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~ 188 (356)
.+..+++|++|.+++.. ++.++.
T Consensus 104 --------------------------~~~~l~~L~~L~l~~n~-l~~~~~------------------------------ 126 (270)
T 2o6q_A 104 --------------------------VFDQLVNLAELRLDRNQ-LKSLPP------------------------------ 126 (270)
T ss_dssp --------------------------TTTTCSSCCEEECCSSC-CCCCCT------------------------------
T ss_pred --------------------------HcccccCCCEEECCCCc-cCeeCH------------------------------
Confidence 02245678888887642 222211
Q ss_pred CccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCc
Q 044144 189 TSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 189 ~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 268 (356)
..+..+++|+.|++.+++++. +|...+..+++|+.|+++++ .+..+ +...+..+++|++|+++++.
T Consensus 127 ------~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~ 192 (270)
T 2o6q_A 127 ------RVFDSLTKLTYLSLGYNELQS------LPKGVFDKLTSLKELRLYNN-QLKRV-PEGAFDKLTELKTLKLDNNQ 192 (270)
T ss_dssp ------TTTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSSC
T ss_pred ------HHhCcCcCCCEEECCCCcCCc------cCHhHccCCcccceeEecCC-cCcEe-ChhHhccCCCcCEEECCCCc
Confidence 112456777777777776665 33334566777788877764 56665 54556667777888877764
Q ss_pred ccceeeccCCCCcCcccccCCccCeeeccccc
Q 044144 269 DLQEIISENRADEVIPYFVFPQLTTLILQYLP 300 (356)
Q Consensus 269 ~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~ 300 (356)
+..+. +..... +++|+.|++.++|
T Consensus 193 -l~~~~-~~~~~~------l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 193 -LKRVP-EGAFDS------LEKLKMLQLQENP 216 (270)
T ss_dssp -CSCCC-TTTTTT------CTTCCEEECCSSC
T ss_pred -CCcCC-HHHhcc------ccCCCEEEecCCC
Confidence 54442 122222 6677777777654
No 80
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.27 E-value=1.1e-12 Score=129.57 Aligned_cols=118 Identities=11% Similarity=0.045 Sum_probs=60.4
Q ss_pred CCCcCeEEecc---e-eeeEEcccCCCCCCCCCCCcCccEEeeccCcC-ccccchhhhhhhcCCCCeEEEecCcccceee
Q 044144 200 LPNLEALEISA---I-NVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNK-LKYIFSASMIGSLKHLQHLEVRFCEDLQEII 274 (356)
Q Consensus 200 l~~L~~L~l~~---~-~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~-l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~ 274 (356)
+++|+.|++.+ + .+++.....+++. .+..+++|++|++++|.. +.+.........+++|+.|++++|. +....
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~ 479 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRS-LLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEG 479 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHH-HHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHH-HHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHH
Confidence 67777777763 2 3433100000000 123467777777766653 3443233344456777777777665 32211
Q ss_pred ccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 275 SENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 275 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
.+.... .+++|++|++++|+ ++..........+++|++|++++|.
T Consensus 480 ~~~~~~------~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 480 LMEFSR------GCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHT------CCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHh------cCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 111112 25677777777776 4432222112356777777777776
No 81
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.26 E-value=3.8e-12 Score=115.68 Aligned_cols=109 Identities=19% Similarity=0.208 Sum_probs=51.2
Q ss_pred ccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccC
Q 044144 198 VALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISEN 277 (356)
Q Consensus 198 ~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~ 277 (356)
..+++|++|++.+|+++.+.. .+...+..+++|+.|+++++ ++....+......+++|+.|++++|. ++.+ +.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~~---~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~i--p~ 270 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPSG---VCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNLSFTG-LKQV--PK 270 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHHH---HHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCCCTTCCEEECTTSC-CSSC--CS
T ss_pred ccCCCCCEEECCCCcCcchHH---HHHHHHhcCCCCCEEECCCC-cCCcccchhhhhhcCCCCEEECCCCc-cChh--hh
Confidence 345566666666665542100 01101223456666666553 34443222333445566666666654 3332 11
Q ss_pred CCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccC
Q 044144 278 RADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRC 325 (356)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C 325 (356)
.. +++|++|+++++ +++.++. ...+++|++|++.+.
T Consensus 271 ~~--------~~~L~~L~Ls~N-~l~~~p~---~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 271 GL--------PAKLSVLDLSYN-RLDRNPS---PDELPQVGNLSLKGN 306 (312)
T ss_dssp SC--------CSEEEEEECCSS-CCCSCCC---TTTSCEEEEEECTTC
T ss_pred hc--------cCCceEEECCCC-CCCCChh---HhhCCCCCEEeccCC
Confidence 11 145666666554 5555533 145566666666554
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.21 E-value=2.4e-10 Score=105.42 Aligned_cols=207 Identities=16% Similarity=0.120 Sum_probs=136.1
Q ss_pred CcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCc--hhhhhcccc--ccccccchhhhhcccccccC
Q 044144 57 FPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFW--LSTVVNHSS--TVVNCSKMKEIFAIGEEVDN 132 (356)
Q Consensus 57 ~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~--l~~ll~~L~--~i~~c~~L~~l~~~~~~~~~ 132 (356)
++++++|++++ .+++.++.+.+ ..+++|++|+++++..+..++. +..+ ..+. .+.++.++..++.
T Consensus 29 ~~~l~~L~Ls~-N~i~~i~~~~f--~~l~~L~~L~Ls~N~i~~~i~~~~f~~L-~~l~~~l~~~~N~l~~l~~------- 97 (350)
T 4ay9_X 29 PRNAIELRFVL-TKLRVIQKGAF--SGFGDLEKIEISQNDVLEVIEADVFSNL-PKLHEIRIEKANNLLYINP------- 97 (350)
T ss_dssp CTTCSEEEEES-CCCSEECTTSS--TTCTTCCEEEEECCTTCCEECTTSBCSC-TTCCEEEEEEETTCCEECT-------
T ss_pred CCCCCEEEccC-CcCCCcCHHHH--cCCCCCCEEECcCCCCCCccChhHhhcc-hhhhhhhcccCCcccccCc-------
Confidence 46899999999 56888865432 3589999999999876665432 2222 2221 2333444444432
Q ss_pred cccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecce-
Q 044144 133 SIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAI- 211 (356)
Q Consensus 133 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~- 211 (356)
..+..+++|+.|.++++. ++.++.. ......++..|.+.++
T Consensus 98 -~~f~~l~~L~~L~l~~n~-l~~~~~~------------------------------------~~~~~~~l~~l~l~~~~ 139 (350)
T 4ay9_X 98 -EAFQNLPNLQYLLISNTG-IKHLPDV------------------------------------HKIHSLQKVLLDIQDNI 139 (350)
T ss_dssp -TSBCCCTTCCEEEEEEEC-CSSCCCC------------------------------------TTCCBSSCEEEEEESCT
T ss_pred -hhhhhccccccccccccc-cccCCch------------------------------------hhcccchhhhhhhcccc
Confidence 123455667777666532 2221111 1123456778888776
Q ss_pred eeeEEcccCCCCCCCCCCC-cCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCc
Q 044144 212 NVDKIWHYNQIPAAVFPRF-QNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQ 290 (356)
Q Consensus 212 ~l~~~~~~~~~p~~~~~~l-~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~ 290 (356)
+++.+ +...+..+ ..++.|++++ ++++.+ +...+ ..++|++|.+.+++.++.+. ++.... +++
T Consensus 140 ~i~~l------~~~~f~~~~~~l~~L~L~~-N~i~~i-~~~~f-~~~~L~~l~l~~~n~l~~i~-~~~f~~------l~~ 203 (350)
T 4ay9_X 140 NIHTI------ERNSFVGLSFESVILWLNK-NGIQEI-HNSAF-NGTQLDELNLSDNNNLEELP-NDVFHG------ASG 203 (350)
T ss_dssp TCCEE------CTTSSTTSBSSCEEEECCS-SCCCEE-CTTSS-TTEEEEEEECTTCTTCCCCC-TTTTTT------EEC
T ss_pred ccccc------cccchhhcchhhhhhcccc-ccccCC-Chhhc-cccchhHHhhccCCcccCCC-HHHhcc------Ccc
Confidence 77774 22234444 4688899976 678887 54444 45789999999988887773 233344 889
Q ss_pred cCeeeccccccceeecCCCCcCCCCcccEEeeccCcCcccccc
Q 044144 291 LTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAA 333 (356)
Q Consensus 291 L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~ 333 (356)
|++|+++++ +++.++.. .+.+|++|.+.+|.+++.+|.
T Consensus 204 L~~LdLs~N-~l~~lp~~----~~~~L~~L~~l~~~~l~~lP~ 241 (350)
T 4ay9_X 204 PVILDISRT-RIHSLPSY----GLENLKKLRARSTYNLKKLPT 241 (350)
T ss_dssp CSEEECTTS-CCCCCCSS----SCTTCCEEECTTCTTCCCCCC
T ss_pred cchhhcCCC-CcCccChh----hhccchHhhhccCCCcCcCCC
Confidence 999999987 79988764 467899999999999999984
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.20 E-value=3.1e-11 Score=109.62 Aligned_cols=202 Identities=18% Similarity=0.146 Sum_probs=119.9
Q ss_pred ccCCCcEEEEecCCCceEeecCCccccc--ccCcccceeecccccccccccccccc--ccCCCCccEEEEccCCCccccC
Q 044144 27 GFSQLKLLWVQNNPDFFCIVDSRAMVAC--DAFPLLESLILHNLINMERIWIDQLK--VESFNELKIIQAYNCDKLSNIF 102 (356)
Q Consensus 27 ~l~~L~~L~l~~c~~l~~l~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~~~~~~--~~~l~~L~~L~l~~c~~l~~~~ 102 (356)
++++|++|+++++ +++.. .+..+ ..+++|++|++++. .++.++..... ...+++|++|+++++. +..++
T Consensus 93 ~l~~L~~L~L~~n-~l~~~----~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~ 165 (312)
T 1wwl_A 93 GISGLQELTLENL-EVTGT----APPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFS 165 (312)
T ss_dssp TTSCCCEEEEEEE-BCBSC----CCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCC
T ss_pred CcCCccEEEccCC-cccch----hHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCC-Cccch
Confidence 5889999999888 45421 12222 67889999999884 45555322100 0113889999998874 33332
Q ss_pred -----chhhhhccccccccccchhhh--hcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccc
Q 044144 103 -----WLSTVVNHSSTVVNCSKMKEI--FAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEE 175 (356)
Q Consensus 103 -----~l~~ll~~L~~i~~c~~L~~l--~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 175 (356)
.+..+ +.| .++++.-...+ +. ......+++|++|+++++. ++.++
T Consensus 166 ~~~~~~l~~L-~~L-~Ls~N~l~~~~~~~~-------~~~~~~l~~L~~L~L~~N~-l~~~~------------------ 217 (312)
T 1wwl_A 166 CEQVRVFPAL-STL-DLSDNPELGERGLIS-------ALCPLKFPTLQVLALRNAG-METPS------------------ 217 (312)
T ss_dssp TTTCCCCSSC-CEE-ECCSCTTCHHHHHHH-------HSCTTSCTTCCEEECTTSC-CCCHH------------------
T ss_pred HHHhccCCCC-CEE-ECCCCCcCcchHHHH-------HHHhccCCCCCEEECCCCc-CcchH------------------
Confidence 12222 333 55554422211 10 0001345667777776642 22110
Q ss_pred cccccccceeecCCccccc-cccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhh
Q 044144 176 STTTYSSSEITLDTSTLLF-NEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIG 254 (356)
Q Consensus 176 ~~~~l~~l~i~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~ 254 (356)
..+ .....+++|+.|++++|+++.. .|...+..+++|+.|+++++ +++.+ |....
T Consensus 218 ----------------~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~~~~~~~l~~L~~L~Ls~N-~l~~i-p~~~~- 273 (312)
T 1wwl_A 218 ----------------GVCSALAAARVQLQGLDLSHNSLRDA-----AGAPSCDWPSQLNSLNLSFT-GLKQV-PKGLP- 273 (312)
T ss_dssp ----------------HHHHHHHHTTCCCSEEECTTSCCCSS-----CCCSCCCCCTTCCEEECTTS-CCSSC-CSSCC-
T ss_pred ----------------HHHHHHHhcCCCCCEEECCCCcCCcc-----cchhhhhhcCCCCEEECCCC-ccChh-hhhcc-
Confidence 011 1224568999999999987763 22223556789999999885 67766 64443
Q ss_pred hcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeecccc
Q 044144 255 SLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYL 299 (356)
Q Consensus 255 ~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c 299 (356)
++|++|+++++. ++.+ +. ... +++|++|++.+.
T Consensus 274 --~~L~~L~Ls~N~-l~~~--p~-~~~------l~~L~~L~L~~N 306 (312)
T 1wwl_A 274 --AKLSVLDLSYNR-LDRN--PS-PDE------LPQVGNLSLKGN 306 (312)
T ss_dssp --SEEEEEECCSSC-CCSC--CC-TTT------SCEEEEEECTTC
T ss_pred --CCceEEECCCCC-CCCC--hh-Hhh------CCCCCEEeccCC
Confidence 799999999975 6555 22 333 889999999876
No 84
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.19 E-value=2.7e-10 Score=101.35 Aligned_cols=83 Identities=16% Similarity=0.173 Sum_probs=59.9
Q ss_pred cceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccC
Q 044144 4 NVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVES 83 (356)
Q Consensus 4 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~ 83 (356)
+++.|++.+.. +..+ ....+.++++|++|+++++ .++.+. ...+..+++|++|+++++ .++.++... ...
T Consensus 29 ~l~~L~ls~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~----~~~~~~l~~L~~L~L~~n-~l~~~~~~~--~~~ 98 (276)
T 2z62_A 29 STKNLDLSFNP-LRHL-GSYSFFSFPELQVLDLSRC-EIQTIE----DGAYQSLSHLSTLILTGN-PIQSLALGA--FSG 98 (276)
T ss_dssp TCCEEECTTCC-CCEE-CTTTTTTCTTCSEEECTTC-CCCEEC----TTTTTTCTTCCEEECTTC-CCCEECTTT--TTT
T ss_pred CccEEECCCCc-cccc-CHhHhccccCCcEEECCCC-cCCccC----HHHccCCcCCCEEECCCC-ccCccChhh--hcC
Confidence 58899998764 4444 3335568999999999998 677661 234677899999999995 455554322 245
Q ss_pred CCCccEEEEccCC
Q 044144 84 FNELKIIQAYNCD 96 (356)
Q Consensus 84 l~~L~~L~l~~c~ 96 (356)
+++|++|+++++.
T Consensus 99 l~~L~~L~l~~n~ 111 (276)
T 2z62_A 99 LSSLQKLVAVETN 111 (276)
T ss_dssp CTTCCEEECTTSC
T ss_pred CccccEEECCCCC
Confidence 7999999998863
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.17 E-value=6.2e-10 Score=97.67 Aligned_cols=86 Identities=26% Similarity=0.341 Sum_probs=51.8
Q ss_pred ccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccC
Q 044144 198 VALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISEN 277 (356)
Q Consensus 198 ~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~ 277 (356)
..+++|+.|++.+++++. +|...+..+++|+.|+++++ +++.+ +...+..+++|++|+++++. +..+. +.
T Consensus 104 ~~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~-~~ 173 (251)
T 3m19_A 104 DHLTQLDKLYLGGNQLKS------LPSGVFDRLTKLKELRLNTN-QLQSI-PAGAFDKLTNLQTLSLSTNQ-LQSVP-HG 173 (251)
T ss_dssp TTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CSCCC-TT
T ss_pred cccCCCCEEEcCCCcCCC------cChhHhccCCcccEEECcCC-cCCcc-CHHHcCcCcCCCEEECCCCc-CCccC-HH
Confidence 345677777777776665 33333556677777777663 56666 54556666777777777764 44442 12
Q ss_pred CCCcCcccccCCccCeeecccc
Q 044144 278 RADEVIPYFVFPQLTTLILQYL 299 (356)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~l~~c 299 (356)
.... +++|++|++.++
T Consensus 174 ~~~~------l~~L~~L~l~~N 189 (251)
T 3m19_A 174 AFDR------LGKLQTITLFGN 189 (251)
T ss_dssp TTTT------CTTCCEEECCSC
T ss_pred HHhC------CCCCCEEEeeCC
Confidence 2222 567777777665
No 86
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.14 E-value=2.6e-10 Score=102.51 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=40.4
Q ss_pred cccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccC
Q 044144 26 EGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNC 95 (356)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c 95 (356)
..+++|+.|++++| .++.+ ..+..+++|++|+++++ .++.++. ...+++|+.|+++++
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~------~~~~~l~~L~~L~L~~n-~l~~~~~----l~~l~~L~~L~l~~n 100 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSV------QGIQYLPNVTKLFLNGN-KLTDIKP----LANLKNLGWLFLDEN 100 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCC------TTGGGCTTCCEEECCSS-CCCCCGG----GTTCTTCCEEECCSS
T ss_pred hhcCcccEEEccCC-CcccC------hhHhcCCCCCEEEccCC-ccCCCcc----cccCCCCCEEECCCC
Confidence 46788888888887 55544 23566788888888884 4555532 356788888888876
No 87
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.12 E-value=9.4e-10 Score=108.92 Aligned_cols=111 Identities=19% Similarity=0.262 Sum_probs=65.8
Q ss_pred cccCCCcCeEEeccee-eeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeec
Q 044144 197 KVALPNLEALEISAIN-VDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIIS 275 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~-l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~ 275 (356)
...+++|+.|++.+|+ ...+ .|. .+..+++|+.|++++| +++.+ +...+..+++|++|+++++. +..+.
T Consensus 465 ~~~~~~L~~L~Ls~N~~~~~~-----~~~-~~~~l~~L~~L~Ls~N-~L~~l-~~~~f~~l~~L~~L~Ls~N~-l~~l~- 534 (635)
T 4g8a_A 465 FNGLSSLEVLKMAGNSFQENF-----LPD-IFTELRNLTFLDLSQC-QLEQL-SPTAFNSLSSLQVLNMSHNN-FFSLD- 534 (635)
T ss_dssp TTTCTTCCEEECTTCEEGGGE-----ECS-CCTTCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECTTSC-CCBCC-
T ss_pred cccchhhhhhhhhhccccccc-----Cch-hhhhccccCEEECCCC-ccCCc-ChHHHcCCCCCCEEECCCCc-CCCCC-
Confidence 4456777777777763 3321 121 3556677777777764 56666 44566677777777777764 54442
Q ss_pred cCCCCcCcccccCCccCeeeccccccceeecCCCCcCCC-CcccEEeeccC
Q 044144 276 ENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEW-PALEIFSVFRC 325 (356)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~-~~L~~L~i~~C 325 (356)
+..... +++|++|+++++ +++.++.... ..+ ++|+.|++.++
T Consensus 535 ~~~~~~------l~~L~~L~Ls~N-~l~~~~~~~l-~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 535 TFPYKC------LNSLQVLDYSLN-HIMTSKKQEL-QHFPSSLAFLNLTQN 577 (635)
T ss_dssp CGGGTT------CTTCCEEECTTS-CCCBCCSSCT-TCCCTTCCEEECTTC
T ss_pred hhHHhC------CCCCCEEECCCC-cCCCCCHHHH-HhhhCcCCEEEeeCC
Confidence 122232 667777777665 5666555432 233 56777777543
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.11 E-value=6.8e-11 Score=107.20 Aligned_cols=39 Identities=15% Similarity=0.091 Sum_probs=21.2
Q ss_pred CcccceeeccccccccccccccccccCCCCccEEEEccCC
Q 044144 57 FPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCD 96 (356)
Q Consensus 57 ~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~ 96 (356)
+++|++|+++++. +.......+....+++|++|+++++.
T Consensus 90 ~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~ 128 (310)
T 4glp_A 90 YSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNVS 128 (310)
T ss_dssp HSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESCC
T ss_pred cCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeeccc
Confidence 3567777777754 33221111100346777777777764
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.08 E-value=2.3e-10 Score=103.65 Aligned_cols=87 Identities=20% Similarity=0.063 Sum_probs=50.9
Q ss_pred ceEEeeCcccCceeecc-ccCccccCCCcEEEEecCCCceEeecCCccccc--ccCcccceeecccccccccccc--ccc
Q 044144 5 VECLWLDKLQGIENVLF-NLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVAC--DAFPLLESLILHNLINMERIWI--DQL 79 (356)
Q Consensus 5 l~~L~l~~~~~~~~~~~-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~--~~~~~L~~L~l~~~~~l~~l~~--~~~ 79 (356)
++.+.+.++.-...... ......+++|++|++++| ++... .+... ..+++|++|+++++. +..... ...
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~----~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~ 139 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL-KITGT----MPPLPLEATGLALSSLRLRNVS-WATGRSWLAEL 139 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSC----CCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHH
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC-Eeccc----hhhhhhhccCCCCCEEEeeccc-ccchhhhhHHH
Confidence 46666666542211111 112234678999999998 45422 12233 778999999999964 333111 001
Q ss_pred cccCCCCccEEEEccCCC
Q 044144 80 KVESFNELKIIQAYNCDK 97 (356)
Q Consensus 80 ~~~~l~~L~~L~l~~c~~ 97 (356)
....+++|++|+++++.-
T Consensus 140 ~~~~~~~L~~L~Ls~n~l 157 (310)
T 4glp_A 140 QQWLKPGLKVLSIAQAHS 157 (310)
T ss_dssp HTTBCSCCCEEEEECCSS
T ss_pred HhhhccCCCEEEeeCCCc
Confidence 113588999999998753
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.07 E-value=4.6e-10 Score=94.78 Aligned_cols=84 Identities=18% Similarity=0.322 Sum_probs=40.0
Q ss_pred CCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeec
Q 044144 227 FPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLY 306 (356)
Q Consensus 227 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~ 306 (356)
+..+++|+.|+++++ .+... ....+..+++|++|++++|..+..+ ..... +++|++|++.+| .+++++
T Consensus 108 l~~l~~L~~L~Ls~n-~i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~---~~l~~------l~~L~~L~l~~n-~i~~~~ 175 (197)
T 4ezg_A 108 LSGLTSLTLLDISHS-AHDDS-ILTKINTLPKVNSIDLSYNGAITDI---MPLKT------LPELKSLNIQFD-GVHDYR 175 (197)
T ss_dssp CTTCTTCCEEECCSS-BCBGG-GHHHHTTCSSCCEEECCSCTBCCCC---GGGGG------CSSCCEEECTTB-CCCCCT
T ss_pred hcCCCCCCEEEecCC-ccCcH-hHHHHhhCCCCCEEEccCCCCcccc---HhhcC------CCCCCEEECCCC-CCcChH
Confidence 334555555555553 33332 1233445555666666555433333 11222 555666666554 344443
Q ss_pred CCCCcCCCCcccEEeeccC
Q 044144 307 PGMHTSEWPALEIFSVFRC 325 (356)
Q Consensus 307 ~~~~~~~~~~L~~L~i~~C 325 (356)
. ...+++|+.|++.+.
T Consensus 176 -~--l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 176 -G--IEDFPKLNQLYAFSQ 191 (197)
T ss_dssp -T--GGGCSSCCEEEECBC
T ss_pred -H--hccCCCCCEEEeeCc
Confidence 1 144556666665553
No 91
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.06 E-value=7.9e-10 Score=93.32 Aligned_cols=114 Identities=16% Similarity=0.252 Sum_probs=73.4
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeecc
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISE 276 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~ 276 (356)
+..+++|+.|++.+|.++. ++. +..+++|++|+++++ .+... ....+..+++|++|++++|. +.... +
T Consensus 62 l~~l~~L~~L~l~~n~~~~------~~~--l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~Ls~n~-i~~~~-~ 129 (197)
T 4ezg_A 62 IEYAHNIKDLTINNIHATN------YNP--ISGLSNLERLRIMGK-DVTSD-KIPNLSGLTSLTLLDISHSA-HDDSI-L 129 (197)
T ss_dssp GGGCTTCSEEEEESCCCSC------CGG--GTTCTTCCEEEEECT-TCBGG-GSCCCTTCTTCCEEECCSSB-CBGGG-H
T ss_pred HhcCCCCCEEEccCCCCCc------chh--hhcCCCCCEEEeECC-ccCcc-cChhhcCCCCCCEEEecCCc-cCcHh-H
Confidence 4566788888888875544 222 556788888888774 55543 22445667888888888875 33311 1
Q ss_pred CCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCccccc
Q 044144 277 NRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFA 332 (356)
Q Consensus 277 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~ 332 (356)
..... +++|++|++.+|..++.++. ...+++|+.|++.+|. ++.++
T Consensus 130 ~~l~~------l~~L~~L~L~~n~~i~~~~~---l~~l~~L~~L~l~~n~-i~~~~ 175 (197)
T 4ezg_A 130 TKINT------LPKVNSIDLSYNGAITDIMP---LKTLPELKSLNIQFDG-VHDYR 175 (197)
T ss_dssp HHHTT------CSSCCEEECCSCTBCCCCGG---GGGCSSCCEEECTTBC-CCCCT
T ss_pred HHHhh------CCCCCEEEccCCCCccccHh---hcCCCCCCEEECCCCC-CcChH
Confidence 22233 77888888888766777652 2567888888888764 55554
No 92
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.06 E-value=6.1e-10 Score=110.02 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=38.6
Q ss_pred cccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccC
Q 044144 26 EGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNC 95 (356)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c 95 (356)
..+++|+.|++.++ .+..+ ..+..+++|+.|+++++ .+..++. ...+++|+.|+++++
T Consensus 40 ~~L~~L~~L~l~~n-~i~~l------~~l~~l~~L~~L~Ls~N-~l~~~~~----l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 40 NELNSIDQIIANNS-DIKSV------QGIQYLPNVTKLFLNGN-KLTDIKP----LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHTTCCCCBCTTC-CCCCC------TTGGGCTTCCEEECTTS-CCCCCGG----GGGCTTCCEEECCSS
T ss_pred hcCCCCCEEECcCC-CCCCC------hHHccCCCCCEEEeeCC-CCCCChh----hccCCCCCEEECcCC
Confidence 46777888888777 45543 24566778888888775 3555432 345778888888776
No 93
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.01 E-value=6.7e-09 Score=102.74 Aligned_cols=226 Identities=14% Similarity=0.096 Sum_probs=134.3
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccc
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKV 81 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 81 (356)
++.++.+.+....... ......+++|+.|+++++ .+..... .........+|+.+++..... ...+.. .
T Consensus 348 l~~L~~l~l~~n~~~~----~~~~~~l~~L~~L~ls~n-~l~~~~~--~~~~~~~~~~L~~L~~~~~~~-~~~~~~---~ 416 (635)
T 4g8a_A 348 LKSLKRLTFTSNKGGN----AFSEVDLPSLEFLDLSRN-GLSFKGC--CSQSDFGTISLKYLDLSFNGV-ITMSSN---F 416 (635)
T ss_dssp CTTCCEEEEESCCSCC----BCCCCBCTTCCEEECCSS-CCBEEEE--CCHHHHSCSCCCEEECCSCSE-EEECSC---C
T ss_pred chhhhhcccccccCCC----Ccccccccccccchhhcc-ccccccc--cccchhhhhhhhhhhcccccc-cccccc---c
Confidence 3456666665543221 122346899999999887 4443311 112344567899998877542 223222 2
Q ss_pred cCCCCccEEEEccCCCccccCc--hhhhhcccc--ccccccchhhhhcccccccCcccccccccccEEecCCCCCcceee
Q 044144 82 ESFNELKIIQAYNCDKLSNIFW--LSTVVNHSS--TVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFC 157 (356)
Q Consensus 82 ~~l~~L~~L~l~~c~~l~~~~~--l~~ll~~L~--~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 157 (356)
..+++|+.+++.++........ +..+ ..+. .++.+. +..+. ...+..++.|+.|.++++.....+
T Consensus 417 ~~l~~L~~l~l~~~~~~~~~~~~~~~~l-~~l~~l~ls~n~-l~~~~--------~~~~~~~~~L~~L~Ls~N~~~~~~- 485 (635)
T 4g8a_A 417 LGLEQLEHLDFQHSNLKQMSEFSVFLSL-RNLIYLDISHTH-TRVAF--------NGIFNGLSSLEVLKMAGNSFQENF- 485 (635)
T ss_dssp TTCTTCCEEECTTSEEESTTSSCTTTTC-TTCCEEECTTSC-CEECC--------TTTTTTCTTCCEEECTTCEEGGGE-
T ss_pred cccccccchhhhhccccccccccccccc-cccccccccccc-ccccc--------ccccccchhhhhhhhhhccccccc-
Confidence 4578899998877644332211 1111 2111 222111 11010 112334566666666665433222
Q ss_pred cCCCCCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEe
Q 044144 158 REVKTPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLI 237 (356)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~ 237 (356)
.+..+..+++|+.|++++|+++.+ +...|..+++|+.|+
T Consensus 486 -----------------------------------~~~~~~~l~~L~~L~Ls~N~L~~l------~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 486 -----------------------------------LPDIFTELRNLTFLDLSQCQLEQL------SPTAFNSLSSLQVLN 524 (635)
T ss_dssp -----------------------------------ECSCCTTCTTCCEEECTTSCCCEE------CTTTTTTCTTCCEEE
T ss_pred -----------------------------------CchhhhhccccCEEECCCCccCCc------ChHHHcCCCCCCEEE
Confidence 223346678999999999988884 223477899999999
Q ss_pred eccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccC-CccCeeeccccc
Q 044144 238 VWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVF-PQLTTLILQYLP 300 (356)
Q Consensus 238 i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l-~~L~~L~l~~c~ 300 (356)
++++ +++.+ +...+..+++|+.|+++++. +..+. ++.... + ++|++|++.++|
T Consensus 525 Ls~N-~l~~l-~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~l~~------l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 525 MSHN-NFFSL-DTFPYKCLNSLQVLDYSLNH-IMTSK-KQELQH------FPSSLAFLNLTQND 578 (635)
T ss_dssp CTTS-CCCBC-CCGGGTTCTTCCEEECTTSC-CCBCC-SSCTTC------CCTTCCEEECTTCC
T ss_pred CCCC-cCCCC-ChhHHhCCCCCCEEECCCCc-CCCCC-HHHHHh------hhCcCCEEEeeCCC
Confidence 9884 78887 66777889999999999976 65553 233333 4 589999998754
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.01 E-value=3.7e-09 Score=94.90 Aligned_cols=167 Identities=20% Similarity=0.277 Sum_probs=117.2
Q ss_pred CCcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccc
Q 044144 2 INNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKV 81 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~ 81 (356)
+++++.|++.++. +.++ ..+..+++|++|+++++ +++.+ ..+..+++|++|+++++ .++.++. .
T Consensus 45 l~~L~~L~l~~~~-i~~~---~~~~~l~~L~~L~L~~n-~l~~~------~~l~~l~~L~~L~l~~n-~l~~~~~----l 108 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSV---QGIQYLPNVTKLFLNGN-KLTDI------KPLANLKNLGWLFLDEN-KVKDLSS----L 108 (291)
T ss_dssp HHTCCEEECTTSC-CCCC---TTGGGCTTCCEEECCSS-CCCCC------GGGTTCTTCCEEECCSS-CCCCGGG----G
T ss_pred cCcccEEEccCCC-cccC---hhHhcCCCCCEEEccCC-ccCCC------cccccCCCCCEEECCCC-cCCCChh----h
Confidence 4578889998763 4433 23568999999999998 56644 23778999999999995 4666532 3
Q ss_pred cCCCCccEEEEccCCCccccCchhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCC
Q 044144 82 ESFNELKIIQAYNCDKLSNIFWLSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVK 161 (356)
Q Consensus 82 ~~l~~L~~L~l~~c~~l~~~~~l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 161 (356)
..+++|++|+++++. +..+. . +..+++|+.|+++++. ++.+
T Consensus 109 ~~l~~L~~L~L~~n~-i~~~~---~-----------------------------l~~l~~L~~L~l~~n~-l~~~----- 149 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNG-ISDIN---G-----------------------------LVHLPQLESLYLGNNK-ITDI----- 149 (291)
T ss_dssp TTCTTCCEEECTTSC-CCCCG---G-----------------------------GGGCTTCCEEECCSSC-CCCC-----
T ss_pred ccCCCCCEEECCCCc-CCCCh---h-----------------------------hcCCCCCCEEEccCCc-CCcc-----
Confidence 568999999998873 33221 1 2244788888888753 2211
Q ss_pred CCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccC
Q 044144 162 TPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHC 241 (356)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c 241 (356)
..+..+++|+.|++++|+++++ +. +..+++|+.|+++++
T Consensus 150 ---------------------------------~~l~~l~~L~~L~L~~N~l~~~------~~--l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 150 ---------------------------------TVLSRLTKLDTLSLEDNQISDI------VP--LAGLTKLQNLYLSKN 188 (291)
T ss_dssp ---------------------------------GGGGGCTTCSEEECCSSCCCCC------GG--GTTCTTCCEEECCSS
T ss_pred ---------------------------------hhhccCCCCCEEEccCCccccc------hh--hcCCCccCEEECCCC
Confidence 2345678899999988877762 22 557788999999875
Q ss_pred cCccccchhhhhhhcCCCCeEEEecCc
Q 044144 242 NKLKYIFSASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 242 ~~l~~l~~~~~~~~l~~L~~L~i~~c~ 268 (356)
.+.++ + .+..+++|+.|++++++
T Consensus 189 -~i~~l-~--~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 189 -HISDL-R--ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -CCCBC-G--GGTTCTTCSEEEEEEEE
T ss_pred -cCCCC-h--hhccCCCCCEEECcCCc
Confidence 67776 4 36778899999998875
No 95
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.00 E-value=1.6e-09 Score=107.04 Aligned_cols=167 Identities=19% Similarity=0.256 Sum_probs=98.7
Q ss_pred cccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCchhhh--hccccccccccchhhhhccccccc
Q 044144 54 CDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFWLSTV--VNHSSTVVNCSKMKEIFAIGEEVD 131 (356)
Q Consensus 54 ~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~l~~l--l~~L~~i~~c~~L~~l~~~~~~~~ 131 (356)
...+++|+.|.+.++ .+..++ ....+++|+.|+++++. +..++++..+ |+.| .++++. +..++
T Consensus 39 ~~~L~~L~~L~l~~n-~i~~l~----~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L-~Ls~N~-l~~l~------- 103 (605)
T 1m9s_A 39 QNELNSIDQIIANNS-DIKSVQ----GIQYLPNVTKLFLNGNK-LTDIKPLTNLKNLGWL-FLDENK-IKDLS------- 103 (605)
T ss_dssp HHHHTTCCCCBCTTC-CCCCCT----TGGGCTTCCEEECTTSC-CCCCGGGGGCTTCCEE-ECCSSC-CCCCT-------
T ss_pred hhcCCCCCEEECcCC-CCCCCh----HHccCCCCCEEEeeCCC-CCCChhhccCCCCCEE-ECcCCC-CCCCh-------
Confidence 456788999998885 465553 22568999999998873 4433332222 0222 333321 11111
Q ss_pred CcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecce
Q 044144 132 NSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAI 211 (356)
Q Consensus 132 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~ 211 (356)
.+..+++|+.|.++++ .-.. +..+..+++|+.|++.+|
T Consensus 104 ---~l~~l~~L~~L~Ls~N--------------------------------------~l~~-l~~l~~l~~L~~L~Ls~N 141 (605)
T 1m9s_A 104 ---SLKDLKKLKSLSLEHN--------------------------------------GISD-INGLVHLPQLESLYLGNN 141 (605)
T ss_dssp ---TSTTCTTCCEEECTTS--------------------------------------CCCC-CGGGGGCTTCSEEECCSS
T ss_pred ---hhccCCCCCEEEecCC--------------------------------------CCCC-CccccCCCccCEEECCCC
Confidence 1233444444444443 2111 123566788888888888
Q ss_pred eeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCcc
Q 044144 212 NVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQL 291 (356)
Q Consensus 212 ~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L 291 (356)
+++.+ + .+..+++|+.|++++| .+..+.+ +..+++|+.|++++|. +..+ ..... +++|
T Consensus 142 ~l~~l------~--~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l~~L~~L~Ls~N~-i~~l---~~l~~------l~~L 199 (605)
T 1m9s_A 142 KITDI------T--VLSRLTKLDTLSLEDN-QISDIVP---LAGLTKLQNLYLSKNH-ISDL---RALAG------LKNL 199 (605)
T ss_dssp CCCCC------G--GGGSCTTCSEEECCSS-CCCCCGG---GTTCTTCCEEECCSSC-CCBC---GGGTT------CTTC
T ss_pred ccCCc------h--hhcccCCCCEEECcCC-cCCCchh---hccCCCCCEEECcCCC-CCCC---hHHcc------CCCC
Confidence 77662 1 2557788888888775 5666623 6677888888888875 5444 22333 7788
Q ss_pred Ceeecccc
Q 044144 292 TTLILQYL 299 (356)
Q Consensus 292 ~~L~l~~c 299 (356)
+.|++.+|
T Consensus 200 ~~L~L~~N 207 (605)
T 1m9s_A 200 DVLELFSQ 207 (605)
T ss_dssp SEEECCSE
T ss_pred CEEEccCC
Confidence 88888776
No 96
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.99 E-value=6e-12 Score=120.30 Aligned_cols=141 Identities=13% Similarity=-0.006 Sum_probs=72.8
Q ss_pred cccccceeecCCccc-----cccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccc---h
Q 044144 178 TTYSSSEITLDTSTL-----LFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIF---S 249 (356)
Q Consensus 178 ~~l~~l~i~~~~~~~-----l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~---~ 249 (356)
..++.|+++.|.-.. ++..+..+++|+.|++.+|.+++..... +........++|++|++++|. +.... -
T Consensus 256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~-l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l 333 (461)
T 1z7x_W 256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARL-LCETLLEPGCQLESLWVKSCS-FTAACCSHF 333 (461)
T ss_dssp CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHH-HHHHHTSTTCCCCEEECTTSC-CBGGGHHHH
T ss_pred CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHH-HHHHhccCCccceeeEcCCCC-CchHHHHHH
Confidence 346666666664322 3444555677777777777554310000 110001123577788877764 43321 1
Q ss_pred hhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccce-----eecCCCCcCCCCcccEEeecc
Q 044144 250 ASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLR-----CLYPGMHTSEWPALEIFSVFR 324 (356)
Q Consensus 250 ~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~-----~~~~~~~~~~~~~L~~L~i~~ 324 (356)
...+..+++|++|++++|. +...... .... ......++|++|++.+| +++ .++... ..+++|++|++++
T Consensus 334 ~~~l~~~~~L~~L~Ls~n~-i~~~~~~-~l~~-~l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l--~~~~~L~~L~l~~ 407 (461)
T 1z7x_W 334 SSVLAQNRFLLELQISNNR-LEDAGVR-ELCQ-GLGQPGSVLRVLWLADC-DVSDSSCSSLAATL--LANHSLRELDLSN 407 (461)
T ss_dssp HHHHHHCSSCCEEECCSSB-CHHHHHH-HHHH-HHTSTTCCCCEEECTTS-CCCHHHHHHHHHHH--HHCCCCCEEECCS
T ss_pred HHHHhhCCCccEEEccCCc-cccccHH-HHHH-HHcCCCCceEEEECCCC-CCChhhHHHHHHHH--HhCCCccEEECCC
Confidence 1344566788888888774 4332100 0000 00001457888888887 455 233322 3467888888888
Q ss_pred Cc
Q 044144 325 CD 326 (356)
Q Consensus 325 C~ 326 (356)
|+
T Consensus 408 N~ 409 (461)
T 1z7x_W 408 NC 409 (461)
T ss_dssp SS
T ss_pred CC
Confidence 74
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.98 E-value=4.8e-11 Score=111.60 Aligned_cols=70 Identities=9% Similarity=-0.058 Sum_probs=36.6
Q ss_pred cccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccc--cccc-cccccc----cccCCCCccEEEEccCC
Q 044144 26 EGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLI--NMER-IWIDQL----KVESFNELKIIQAYNCD 96 (356)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~-l~~~~~----~~~~l~~L~~L~l~~c~ 96 (356)
..+++|++|++++| .+...........+..+++|++|+++++. .+.. +|.+.. ....+++|++|+++++.
T Consensus 29 ~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 29 LEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred hcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 35677888888877 34321000001124567788888887752 2211 111100 01346788888887764
No 98
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.94 E-value=9.5e-12 Score=118.88 Aligned_cols=291 Identities=13% Similarity=0.042 Sum_probs=149.9
Q ss_pred CcceEEeeCcccCceeeccccCccccCCCcEEEEecCCCceEeecCCcccccccCcccceeecccccccccccccccccc
Q 044144 3 NNVECLWLDKLQGIENVLFNLDTEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVE 82 (356)
Q Consensus 3 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~ 82 (356)
++++.|++.+.. +...........+++|++|++++| ++...........+..+++|++|+++++. +.+.....+. .
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~-~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVL-Q 78 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHH-H
T ss_pred ccceehhhhhcc-cCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHH-H
Confidence 578899997654 333222222457899999999999 45421000012245567999999999954 4432111111 1
Q ss_pred CCC----CccEEEEccCCCcccc---------Cchhhhhccccccccccchhhhh-cccccccCcccccccccccEEecC
Q 044144 83 SFN----ELKIIQAYNCDKLSNI---------FWLSTVVNHSSTVVNCSKMKEIF-AIGEEVDNSIEKIELAQLRYLSLG 148 (356)
Q Consensus 83 ~l~----~L~~L~l~~c~~l~~~---------~~l~~ll~~L~~i~~c~~L~~l~-~~~~~~~~~~~~~~~~~L~~L~l~ 148 (356)
.++ +|++|++++|. +... ..++.+ +.| .++++. +.... .... ..-....++|++|+++
T Consensus 79 ~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L-~~L-~Ls~n~-i~~~~~~~l~----~~l~~~~~~L~~L~L~ 150 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTL-QEL-HLSDNL-LGDAGLQLLC----EGLLDPQCRLEKLQLE 150 (461)
T ss_dssp TTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTC-CEE-ECCSSB-CHHHHHHHHH----HHHTSTTCCCCEEECT
T ss_pred HHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCce-eEE-ECCCCc-CchHHHHHHH----HHHhcCCCcceEEECC
Confidence 233 79999999985 3321 112233 444 566554 22110 0000 0001123468888888
Q ss_pred CCCCcceeecCCCCCCCCCCCCCCccccccccccceeecCCccc-cccccc-----cCCCcCeEEecceeeeEEcccCCC
Q 044144 149 NLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEITLDTSTL-LFNEKV-----ALPNLEALEISAINVDKIWHYNQI 222 (356)
Q Consensus 149 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~-l~~~~~-----~l~~L~~L~l~~~~l~~~~~~~~~ 222 (356)
++. ++.......+ ........++.|+++++.-.. .+..+. ..++|+.|++.+|+++...... +
T Consensus 151 ~n~-l~~~~~~~l~---------~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~-l 219 (461)
T 1z7x_W 151 YCS-LSAASCEPLA---------SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD-L 219 (461)
T ss_dssp TSC-CBGGGHHHHH---------HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH-H
T ss_pred CCC-CCHHHHHHHH---------HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH-H
Confidence 873 2221100000 000022347777777665211 111111 2458888888887665410000 1
Q ss_pred CCCCCCCCcCccEEeeccCcCccccc----hhhhhhhcCCCCeEEEecCcccceee---ccCCCCcCcccccCCccCeee
Q 044144 223 PAAVFPRFQNLTRLIVWHCNKLKYIF----SASMIGSLKHLQHLEVRFCEDLQEII---SENRADEVIPYFVFPQLTTLI 295 (356)
Q Consensus 223 p~~~~~~l~~L~~L~i~~c~~l~~l~----~~~~~~~l~~L~~L~i~~c~~l~~i~---~~~~~~~~~~~~~l~~L~~L~ 295 (356)
+. .+..+++|++|+++++ .+.+.. .......+++|++|++++|. +.... ...... .+++|++|+
T Consensus 220 ~~-~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~------~~~~L~~L~ 290 (461)
T 1z7x_W 220 CG-IVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLR------AKESLKELS 290 (461)
T ss_dssp HH-HHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHH------HCTTCCEEE
T ss_pred HH-HHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHh------hCCCcceEE
Confidence 11 1335678888888876 454431 12233356788888888874 43310 011111 267888888
Q ss_pred ccccccceeecCCCC----cCCCCcccEEeeccCc
Q 044144 296 LQYLPKLRCLYPGMH----TSEWPALEIFSVFRCD 326 (356)
Q Consensus 296 l~~c~~L~~~~~~~~----~~~~~~L~~L~i~~C~ 326 (356)
+.++ .++....... ....++|++|++.+|.
T Consensus 291 Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 324 (461)
T 1z7x_W 291 LAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS 324 (461)
T ss_dssp CTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred CCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC
Confidence 8877 4443211110 1233689999999886
No 99
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.93 E-value=4.8e-10 Score=104.71 Aligned_cols=89 Identities=12% Similarity=-0.042 Sum_probs=55.6
Q ss_pred CCcceEEeeCcccCceeecc---ccCccccCCCcEEEEecCCCceEeecCCccc-------ccccCcccceeeccccccc
Q 044144 2 INNVECLWLDKLQGIENVLF---NLDTEGFSQLKLLWVQNNPDFFCIVDSRAMV-------ACDAFPLLESLILHNLINM 71 (356)
Q Consensus 2 ~~~l~~L~l~~~~~~~~~~~---~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~-------~~~~~~~L~~L~l~~~~~l 71 (356)
+++|+.|++.++. +..... ......+++|++|++++|. +..+.+. .+. .+..+++|++|+++++. +
T Consensus 31 ~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~~~-~~~l~~~-~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l 106 (386)
T 2ca6_A 31 DDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIF-TGRVKDE-IPEALRLLLQALLKCPKLHTVRLSDNA-F 106 (386)
T ss_dssp CSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCC-TTSCGGG-SHHHHHHHHHHHTTCTTCCEEECCSCC-C
T ss_pred CCCccEEECCCCC-CCHHHHHHHHHHHHhCCCccEEeCcccc-cCccccc-hhHHHHHHHHHHhhCCcccEEECCCCc-C
Confidence 4678999998873 222111 1124478999999999982 2222111 111 23578999999999964 4
Q ss_pred cc-----cccccccccCCCCccEEEEccCCC
Q 044144 72 ER-----IWIDQLKVESFNELKIIQAYNCDK 97 (356)
Q Consensus 72 ~~-----l~~~~~~~~~l~~L~~L~l~~c~~ 97 (356)
.. ++... ..+++|++|++++|.-
T Consensus 107 ~~~~~~~l~~~l---~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 107 GPTAQEPLIDFL---SKHTPLEHLYLHNNGL 134 (386)
T ss_dssp CTTTHHHHHHHH---HHCTTCCEEECCSSCC
T ss_pred CHHHHHHHHHHH---HhCCCCCEEECcCCCC
Confidence 43 22111 4579999999999853
No 100
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.92 E-value=1.8e-08 Score=88.29 Aligned_cols=155 Identities=19% Similarity=0.258 Sum_probs=105.4
Q ss_pred ccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceeecCCccccc-cccccCCCcCeEEecceeeeEEcc
Q 044144 140 AQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEITLDTSTLLF-NEKVALPNLEALEISAINVDKIWH 218 (356)
Q Consensus 140 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~-~~~~~l~~L~~L~l~~~~l~~~~~ 218 (356)
+.++.|+++++. ++.+....+ ..+..++.|.++.+.-.... ..+..+++|+.|++.+++++.
T Consensus 35 ~~l~~L~L~~n~-l~~~~~~~~-------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--- 97 (251)
T 3m19_A 35 ADTEKLDLQSTG-LATLSDATF-------------RGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS--- 97 (251)
T ss_dssp TTCCEEECTTSC-CCCCCTTTT-------------TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC---
T ss_pred CCCCEEEccCCC-cCccCHhHh-------------cCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccc---
Confidence 678888887753 333322111 13455777888776643333 345678889999998887776
Q ss_pred cCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccc
Q 044144 219 YNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQY 298 (356)
Q Consensus 219 ~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~ 298 (356)
+|...+..+++|+.|+++++ +++.+ +...+..+++|++|+++++. +..+. +..... +++|++|++.+
T Consensus 98 ---~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~------l~~L~~L~L~~ 164 (251)
T 3m19_A 98 ---LPLGVFDHLTQLDKLYLGGN-QLKSL-PSGVFDRLTKLKELRLNTNQ-LQSIP-AGAFDK------LTNLQTLSLST 164 (251)
T ss_dssp ---CCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTT------CTTCCEEECCS
T ss_pred ---cChhHhcccCCCCEEEcCCC-cCCCc-ChhHhccCCcccEEECcCCc-CCccC-HHHcCc------CcCCCEEECCC
Confidence 44334667888999999774 77777 65667778899999998875 65553 222333 78899999987
Q ss_pred cccceeecCCCCcCCCCcccEEeeccCc
Q 044144 299 LPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 299 c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
+ +++.++.... ..+++|+.|++.+++
T Consensus 165 N-~l~~~~~~~~-~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 165 N-QLQSVPHGAF-DRLGKLQTITLFGNQ 190 (251)
T ss_dssp S-CCSCCCTTTT-TTCTTCCEEECCSCC
T ss_pred C-cCCccCHHHH-hCCCCCCEEEeeCCc
Confidence 7 6777665432 567888888888865
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.92 E-value=1.2e-08 Score=86.70 Aligned_cols=62 Identities=21% Similarity=0.380 Sum_probs=32.4
Q ss_pred cCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCc
Q 044144 199 ALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 199 ~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 268 (356)
.+++|+.|++.+++++. ++...+..+++|+.|+++++ .+..+ +...+..+++|+.|++.+++
T Consensus 98 ~l~~L~~L~L~~N~l~~------~~~~~~~~l~~L~~L~l~~N-~l~~~-~~~~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQS------LPDGVFDKLTQLKDLRLYQN-QLKSV-PDGVFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp TCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSS-CCSCC-CTTTTTTCTTCCEEECCSCC
T ss_pred CccCCCEEEcCCCcCcc------cCHhHhccCCcCCEEECCCC-cccee-CHHHhccCCCccEEEecCCC
Confidence 44566666666655544 22223445566666666553 44444 43444555566666666553
No 102
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.90 E-value=3.5e-09 Score=86.81 Aligned_cols=118 Identities=16% Similarity=0.151 Sum_probs=86.5
Q ss_pred ccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeec
Q 044144 196 EKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIIS 275 (356)
Q Consensus 196 ~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~ 275 (356)
.+..+++|+.|++.+|.++.+ . .+..+++|+.|+++++ .+... ....+..+++|+.|++++|. +..+..
T Consensus 44 ~~~~l~~L~~L~l~~n~l~~~--~------~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~ 112 (168)
T 2ell_A 44 LTAEFVNLEFLSLINVGLISV--S------NLPKLPKLKKLELSEN-RIFGG-LDMLAEKLPNLTHLNLSGNK-LKDIST 112 (168)
T ss_dssp CCGGGGGCCEEEEESSCCCCC--S------SCCCCSSCCEEEEESC-CCCSC-CCHHHHHCTTCCEEECBSSS-CCSSGG
T ss_pred HHHhCCCCCEEeCcCCCCCCh--h------hhccCCCCCEEECcCC-cCchH-HHHHHhhCCCCCEEeccCCc-cCcchh
Confidence 346789999999999988773 1 2668899999999886 56664 33666779999999999985 655522
Q ss_pred cCCCCcCcccccCCccCeeeccccccceeecC--CCCcCCCCcccEEeeccCcCccccc
Q 044144 276 ENRADEVIPYFVFPQLTTLILQYLPKLRCLYP--GMHTSEWPALEIFSVFRCDKLKIFA 332 (356)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~--~~~~~~~~~L~~L~i~~C~~l~~l~ 332 (356)
...... +++|++|++.++ .++.++. ...+..+++|+.|++.+|. ++.+|
T Consensus 113 ~~~l~~------l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~ 163 (168)
T 2ell_A 113 LEPLKK------LECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAP 163 (168)
T ss_dssp GGGGSS------CSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCC
T ss_pred HHHHhc------CCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcc
Confidence 233333 889999999988 5666654 1123678999999999986 44444
No 103
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.89 E-value=5.4e-10 Score=103.54 Aligned_cols=116 Identities=12% Similarity=0.085 Sum_probs=51.2
Q ss_pred CcCeEEecceeeeEEcccCCCCCCCCCCC-cCccEEeeccCcCcccc----chhhhhhhcCCCCeEEEecCcccceeecc
Q 044144 202 NLEALEISAINVDKIWHYNQIPAAVFPRF-QNLTRLIVWHCNKLKYI----FSASMIGSLKHLQHLEVRFCEDLQEIISE 276 (356)
Q Consensus 202 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l-~~L~~L~i~~c~~l~~l----~~~~~~~~l~~L~~L~i~~c~~l~~i~~~ 276 (356)
+|+.|++++|++++..... +.. .+..+ ++|+.|+++++ .+.+. ++.......++|++|++++|. +.....
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~-l~~-~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~- 242 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAE-LAK-FLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSL- 242 (362)
T ss_dssp TCCEEECTTSCGGGSCHHH-HHH-HHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCH-
T ss_pred cccEeeecCCCCchhhHHH-HHH-HHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHH-
Confidence 6777777766555411000 000 12223 36777777664 34441 022222223467777777664 332210
Q ss_pred CCCCcCcccccCCccCeeeccccc-------cceeecCCCCcCCCCcccEEeeccCc
Q 044144 277 NRADEVIPYFVFPQLTTLILQYLP-------KLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 277 ~~~~~~~~~~~l~~L~~L~l~~c~-------~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
.... .....+++|++|++.+|. .+..+.... ..+++|+.|++++++
T Consensus 243 ~~l~--~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~--~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 243 ENLK--LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAF--PNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHH--HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTS--TTCCEEEEECTTSCB
T ss_pred HHHH--HHHhcCCCccEEEeccCCccccCHHHHHHHHHHh--ccCCceEEEecCCCc
Confidence 0000 001124567777776663 122222222 345566666666554
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.87 E-value=1e-08 Score=88.63 Aligned_cols=112 Identities=22% Similarity=0.288 Sum_probs=79.7
Q ss_pred ccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeec
Q 044144 196 EKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIIS 275 (356)
Q Consensus 196 ~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~ 275 (356)
.+..+++|+.|++.+++++. +|...+..+++|+.|+++++ +++.+ +...+..+++|+.|+++++. +..+
T Consensus 59 ~~~~l~~L~~L~L~~N~l~~------i~~~~~~~l~~L~~L~Ls~N-~l~~l-~~~~~~~l~~L~~L~Ls~N~-l~~l-- 127 (229)
T 3e6j_A 59 VFDSLINLKELYLGSNQLGA------LPVGVFDSLTQLTVLDLGTN-QLTVL-PSAVFDRLVHLKELFMCCNK-LTEL-- 127 (229)
T ss_dssp TTTTCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCSC--
T ss_pred HhhCccCCcEEECCCCCCCC------cChhhcccCCCcCEEECCCC-cCCcc-ChhHhCcchhhCeEeccCCc-cccc--
Confidence 34567888888888887766 44434667888888888774 77777 65666778888888888875 5544
Q ss_pred cCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 276 ENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
+..... +++|++|++.++ +++.++... +..+++|+.|++.+++
T Consensus 128 p~~~~~------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 128 PRGIER------LTHLTHLALDQN-QLKSIPHGA-FDRLSSLTHAYLFGNP 170 (229)
T ss_dssp CTTGGG------CTTCSEEECCSS-CCCCCCTTT-TTTCTTCCEEECTTSC
T ss_pred Cccccc------CCCCCEEECCCC-cCCccCHHH-HhCCCCCCEEEeeCCC
Confidence 233333 788888888776 777776532 2567888888887765
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.87 E-value=1.2e-08 Score=86.55 Aligned_cols=109 Identities=21% Similarity=0.318 Sum_probs=53.6
Q ss_pred ccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccC
Q 044144 198 VALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISEN 277 (356)
Q Consensus 198 ~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~ 277 (356)
..+++|+.|++.+++++. +|...+..+++|++|+++++ ++..+ +...+..+++|++|+++++. +..+. +.
T Consensus 49 ~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~-~~ 118 (208)
T 2o6s_A 49 DELTSLTQLYLGGNKLQS------LPNGVFNKLTSLTYLNLSTN-QLQSL-PNGVFDKLTQLKELALNTNQ-LQSLP-DG 118 (208)
T ss_dssp TTCTTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TT
T ss_pred cccccCcEEECCCCccCc------cChhhcCCCCCcCEEECCCC-cCCcc-CHhHhcCccCCCEEEcCCCc-CcccC-Hh
Confidence 345566666666655544 22223445566666666553 44444 43444555666666665553 43331 11
Q ss_pred CCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeecc
Q 044144 278 RADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFR 324 (356)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~ 324 (356)
.... +++|++|++.++ +++.++... +..+++|+.|++.+
T Consensus 119 ~~~~------l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~ 157 (208)
T 2o6s_A 119 VFDK------LTQLKDLRLYQN-QLKSVPDGV-FDRLTSLQYIWLHD 157 (208)
T ss_dssp TTTT------CTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCS
T ss_pred Hhcc------CCcCCEEECCCC-ccceeCHHH-hccCCCccEEEecC
Confidence 1222 555666666554 444444322 13455566665555
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.86 E-value=1.3e-08 Score=87.34 Aligned_cols=112 Identities=19% Similarity=0.286 Sum_probs=77.3
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeecc
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISE 276 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~ 276 (356)
+..+++|+.|++.+++++.+ .| ..|..+++|+.|++++ +.++.+ +...+..+++|+.|+++++. +..+. +
T Consensus 52 ~~~l~~L~~L~Ls~N~i~~~-----~~-~~~~~l~~L~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~N~-l~~~~-~ 121 (220)
T 2v9t_B 52 FSPYKKLRRIDLSNNQISEL-----AP-DAFQGLRSLNSLVLYG-NKITEL-PKSLFEGLFSLQLLLLNANK-INCLR-V 121 (220)
T ss_dssp STTCTTCCEEECCSSCCCEE-----CT-TTTTTCSSCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-T
T ss_pred hhCCCCCCEEECCCCcCCCc-----CH-HHhhCCcCCCEEECCC-CcCCcc-CHhHccCCCCCCEEECCCCC-CCEeC-H
Confidence 35567888888888877764 12 2366778888888876 467776 66667778888888888875 55542 2
Q ss_pred CCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 277 NRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 277 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
..... +++|++|++.++ +++.++.... ..+++|+.|++.+++
T Consensus 122 ~~~~~------l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 122 DAFQD------LHNLNLLSLYDN-KLQTIAKGTF-SPLRAIQTMHLAQNP 163 (220)
T ss_dssp TTTTT------CTTCCEEECCSS-CCSCCCTTTT-TTCTTCCEEECCSSC
T ss_pred HHcCC------CCCCCEEECCCC-cCCEECHHHH-hCCCCCCEEEeCCCC
Confidence 33333 778888888776 6776665432 567788888887765
No 107
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.82 E-value=4.8e-08 Score=89.12 Aligned_cols=103 Identities=21% Similarity=0.227 Sum_probs=79.5
Q ss_pred cCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCC-eEEEecCcccceeeccC
Q 044144 199 ALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQ-HLEVRFCEDLQEIISEN 277 (356)
Q Consensus 199 ~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~-~L~i~~c~~l~~i~~~~ 277 (356)
.+++|+.+++.+++++. +|...|..+++|+.+++.+ +++.+ +...+.++++|+ .+++.+ .++.+. +.
T Consensus 224 ~~~~L~~l~L~~n~i~~------I~~~aF~~~~~L~~l~l~~--ni~~I-~~~aF~~~~~L~~~l~l~~--~l~~I~-~~ 291 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATT------IPDFTFAQKKYLLKIKLPH--NLKTI-GQRVFSNCGRLAGTLELPA--SVTAIE-FG 291 (329)
T ss_dssp HCTTCCEEECTTBCCCE------ECTTTTTTCTTCCEEECCT--TCCEE-CTTTTTTCTTCCEEEEECT--TCCEEC-TT
T ss_pred hcCCCeEEECCCCCcce------ecHhhhhCCCCCCEEECCc--cccee-hHHHhhCChhccEEEEEcc--cceEEc-hh
Confidence 37899999999988888 4444588899999999976 48888 778899999999 999988 576762 34
Q ss_pred CCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEe
Q 044144 278 RADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFS 321 (356)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~ 321 (356)
.... +++|+.+.+.+. +++.++.... ..+++|+.++
T Consensus 292 aF~~------c~~L~~l~l~~n-~i~~I~~~aF-~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMG------CDNLRYVLATGD-KITTLGDELF-GNGVPSKLIY 327 (329)
T ss_dssp TTTT------CTTEEEEEECSS-CCCEECTTTT-CTTCCCCEEE
T ss_pred hhhC------CccCCEEEeCCC-ccCccchhhh-cCCcchhhhc
Confidence 4444 788999988543 7888877652 5667777665
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.81 E-value=3.3e-08 Score=84.88 Aligned_cols=112 Identities=16% Similarity=0.254 Sum_probs=85.6
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeecc
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISE 276 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~ 276 (356)
+..+++|+.|++.+++++.+ +...+..+++|+.|++++ +.+..+ +...+..+++|++|+++++. +..+. +
T Consensus 53 ~~~l~~L~~L~L~~N~i~~i------~~~~~~~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~-~ 122 (220)
T 2v70_A 53 FKKLPQLRKINFSNNKITDI------EEGAFEGASGVNEILLTS-NRLENV-QHKMFKGLESLKTLMLRSNR-ITCVG-N 122 (220)
T ss_dssp GGGCTTCCEEECCSSCCCEE------CTTTTTTCTTCCEEECCS-SCCCCC-CGGGGTTCSSCCEEECTTSC-CCCBC-T
T ss_pred hccCCCCCEEECCCCcCCEE------CHHHhCCCCCCCEEECCC-CccCcc-CHhHhcCCcCCCEEECCCCc-CCeEC-H
Confidence 46788999999999988874 333477889999999987 467777 66777889999999999976 65553 2
Q ss_pred CCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 277 NRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 277 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
..... +++|++|++.++ +++.+..... ..+++|+.|++.+++
T Consensus 123 ~~~~~------l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 123 DSFIG------LSSVRLLSLYDN-QITTVAPGAF-DTLHSLSTLNLLANP 164 (220)
T ss_dssp TSSTT------CTTCSEEECTTS-CCCCBCTTTT-TTCTTCCEEECCSCC
T ss_pred hHcCC------CccCCEEECCCC-cCCEECHHHh-cCCCCCCEEEecCcC
Confidence 33443 789999999886 7777754432 578899999988876
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.80 E-value=5.3e-09 Score=92.46 Aligned_cols=60 Identities=18% Similarity=0.194 Sum_probs=41.9
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCc
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 268 (356)
+..+++|+.|++.+|+++++ +. +..+++|+.|+++++ .+..+ ..+..+++|+.|++++++
T Consensus 124 l~~l~~L~~L~Ls~N~i~~~------~~--l~~l~~L~~L~L~~N-~i~~~---~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 124 LIHLKNLEILSIRNNKLKSI------VM--LGFLSKLEVLDLHGN-EITNT---GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp GTTCTTCCEEECTTSCCCBC------GG--GGGCTTCCEEECTTS-CCCBC---TTSTTCCCCCEEEEEEEE
T ss_pred hcCcccccEEECCCCcCCCC------hH--HccCCCCCEEECCCC-cCcch---HHhccCCCCCEEeCCCCc
Confidence 35567888888888877762 22 556788888888774 55555 345667888888888765
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.78 E-value=5.7e-08 Score=83.37 Aligned_cols=63 Identities=14% Similarity=0.256 Sum_probs=39.8
Q ss_pred ccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCc
Q 044144 198 VALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 198 ~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 268 (356)
..+++|++|++.+++++.+ +...+..+++|+.|++++ ++++.+ +...+..+++|+.|++.+++
T Consensus 102 ~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~L~~-N~l~~~-~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 102 KGLESLKTLMLRSNRITCV------GNDSFIGLSSVRLLSLYD-NQITTV-APGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp TTCSSCCEEECTTSCCCCB------CTTSSTTCTTCSEEECTT-SCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred cCCcCCCEEECCCCcCCeE------CHhHcCCCccCCEEECCC-CcCCEE-CHHHhcCCCCCCEEEecCcC
Confidence 4567777777777766652 222355667777777766 356665 34555667777777777654
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.78 E-value=3.3e-08 Score=87.29 Aligned_cols=120 Identities=18% Similarity=0.193 Sum_probs=70.9
Q ss_pred ccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCC
Q 044144 179 TYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKH 258 (356)
Q Consensus 179 ~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~ 258 (356)
.++.|.++.+.-..++. +..+++|+.|++.+|+++. +|. +.. ++|+.|+++++ ++..+ + .+..+++
T Consensus 64 ~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~------l~~--~~~-~~L~~L~L~~N-~l~~~-~--~l~~l~~ 129 (263)
T 1xeu_A 64 NLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKN------LNG--IPS-ACLSRLFLDNN-ELRDT-D--SLIHLKN 129 (263)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSC------CTT--CCC-SSCCEEECCSS-CCSBS-G--GGTTCTT
T ss_pred CCCEEECCCCccCCChh-hccCCCCCEEECCCCccCC------cCc--ccc-CcccEEEccCC-ccCCC-h--hhcCccc
Confidence 34455554443222332 5667777777777776665 232 212 67777777764 55555 3 3566777
Q ss_pred CCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 259 LQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 259 L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
|+.|+++++. ++.+ ..... +++|++|+++++ .++.+ .. ...+++|+.|++.+++
T Consensus 130 L~~L~Ls~N~-i~~~---~~l~~------l~~L~~L~L~~N-~i~~~-~~--l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 130 LEILSIRNNK-LKSI---VMLGF------LSKLEVLDLHGN-EITNT-GG--LTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCEEECTTSC-CCBC---GGGGG------CTTCCEEECTTS-CCCBC-TT--STTCCCCCEEEEEEEE
T ss_pred ccEEECCCCc-CCCC---hHHcc------CCCCCEEECCCC-cCcch-HH--hccCCCCCEEeCCCCc
Confidence 7777777765 5444 12222 677777777765 55555 11 2566777777777654
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.75 E-value=5.1e-08 Score=84.23 Aligned_cols=130 Identities=18% Similarity=0.203 Sum_probs=97.4
Q ss_pred CCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCC
Q 044144 201 PNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRAD 280 (356)
Q Consensus 201 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 280 (356)
++|+.|++.+++++.+ +...+..+++|+.|+++++ ++..+ +...+..+++|+.|+++++. +..+. +....
T Consensus 40 ~~L~~L~Ls~n~i~~~------~~~~~~~l~~L~~L~L~~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~l~-~~~~~ 109 (229)
T 3e6j_A 40 TNAQILYLHDNQITKL------EPGVFDSLINLKELYLGSN-QLGAL-PVGVFDSLTQLTVLDLGTNQ-LTVLP-SAVFD 109 (229)
T ss_dssp TTCSEEECCSSCCCCC------CTTTTTTCTTCCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTT
T ss_pred CCCCEEEcCCCccCcc------CHHHhhCccCCcEEECCCC-CCCCc-ChhhcccCCCcCEEECCCCc-CCccC-hhHhC
Confidence 8999999999988873 2234778999999999884 67777 76777889999999999985 76653 22233
Q ss_pred cCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCcccccccc-cCCCCCCCCCCCCCC
Q 044144 281 EVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAADL-SQNNENDQLGIPAQQ 350 (356)
Q Consensus 281 ~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~-~~~~~~~~~~~~~~~ 350 (356)
. +++|++|.+.++ +++.++... ..+++|+.|++.++ +++.+|.+. ........+.+.+++
T Consensus 110 ~------l~~L~~L~Ls~N-~l~~lp~~~--~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 110 R------LVHLKELFMCCN-KLTELPRGI--ERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp T------CTTCCEEECCSS-CCCSCCTTG--GGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred c------chhhCeEeccCC-cccccCccc--ccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCC
Confidence 3 889999999887 788887665 78899999999986 688877542 222334445555444
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.75 E-value=7e-09 Score=83.16 Aligned_cols=111 Identities=14% Similarity=0.169 Sum_probs=79.6
Q ss_pred ccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeec
Q 044144 196 EKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIIS 275 (356)
Q Consensus 196 ~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~ 275 (356)
.+..+++|+.|++.+|+++.+ . .+..+++|+.|+++++ .+....| ..+..+++|++|++++|. +..+..
T Consensus 37 ~~~~l~~L~~L~l~~n~l~~~--~------~~~~l~~L~~L~Ls~n-~i~~~~~-~~~~~l~~L~~L~ls~N~-i~~~~~ 105 (149)
T 2je0_A 37 LTDEFEELEFLSTINVGLTSI--A------NLPKLNKLKKLELSDN-RVSGGLE-VLAEKCPNLTHLNLSGNK-IKDLST 105 (149)
T ss_dssp CCTTCTTCCEEECTTSCCCCC--T------TCCCCTTCCEEECCSS-CCCSCTH-HHHHHCTTCCEEECTTSC-CCSHHH
T ss_pred HHhhcCCCcEEECcCCCCCCc--h------hhhcCCCCCEEECCCC-cccchHH-HHhhhCCCCCEEECCCCc-CCChHH
Confidence 346689999999999988773 1 2667899999999885 5666424 566778999999999986 555422
Q ss_pred cCCCCcCcccccCCccCeeeccccccceeecCC--CCcCCCCcccEEeecc
Q 044144 276 ENRADEVIPYFVFPQLTTLILQYLPKLRCLYPG--MHTSEWPALEIFSVFR 324 (356)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~~~~~L~~L~i~~ 324 (356)
...... +++|++|+++++ .++.++.. .....+++|+.|++++
T Consensus 106 ~~~~~~------l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 106 IEPLKK------LENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HGGGGG------CTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred HHHHhh------CCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 233333 889999999988 67766551 1225678888887653
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.74 E-value=6.9e-08 Score=94.51 Aligned_cols=106 Identities=10% Similarity=0.020 Sum_probs=55.5
Q ss_pred CCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCC
Q 044144 200 LPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRA 279 (356)
Q Consensus 200 l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 279 (356)
+++|+.|++.+|+++. +|. .+++|+.|+++++ .+..+ |. +. ++|+.|+++++. ++.+. . .
T Consensus 139 l~~L~~L~Ls~N~l~~------lp~----~l~~L~~L~Ls~N-~L~~l-p~--l~--~~L~~L~Ls~N~-L~~lp--~-~ 198 (571)
T 3cvr_A 139 PALLEYINADNNQLTM------LPE----LPTSLEVLSVRNN-QLTFL-PE--LP--ESLEALDVSTNL-LESLP--A-V 198 (571)
T ss_dssp CTTCCEEECCSSCCSC------CCC----CCTTCCEEECCSS-CCSCC-CC--CC--TTCCEEECCSSC-CSSCC--C-C
T ss_pred CccccEEeCCCCccCc------CCC----cCCCcCEEECCCC-CCCCc-ch--hh--CCCCEEECcCCC-CCchh--h-H
Confidence 4667777777766554 332 3466777777654 45554 43 22 667777777664 44331 1 2
Q ss_pred CcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCcc
Q 044144 280 DEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLK 329 (356)
Q Consensus 280 ~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~ 329 (356)
.. ......+.|+.|++.++ +++.++... ..+++|+.|++.+++--.
T Consensus 199 ~~-~L~~~~~~L~~L~Ls~N-~l~~lp~~l--~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 199 PV-RNHHSEETEIFFRCREN-RITHIPENI--LSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp C---------CCEEEECCSS-CCCCCCGGG--GGSCTTEEEECCSSSCCH
T ss_pred HH-hhhcccccceEEecCCC-cceecCHHH--hcCCCCCEEEeeCCcCCC
Confidence 11 00000112267777665 566665543 346677777777765433
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.72 E-value=3e-10 Score=111.49 Aligned_cols=106 Identities=20% Similarity=0.135 Sum_probs=67.9
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeecc
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISE 276 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~ 276 (356)
+..+++|+.|++++|+++. +|. .+..+++|+.|++++ +.++.+ | .++.+++|+.|+++++. +..+..+
T Consensus 459 ~~~l~~L~~L~Ls~N~l~~------lp~-~~~~l~~L~~L~Ls~-N~l~~l-p--~l~~l~~L~~L~Ls~N~-l~~~~~p 526 (567)
T 1dce_A 459 LEQLLLVTHLDLSHNRLRA------LPP-ALAALRCLEVLQASD-NALENV-D--GVANLPRLQELLLCNNR-LQQSAAI 526 (567)
T ss_dssp GGGGTTCCEEECCSSCCCC------CCG-GGGGCTTCCEEECCS-SCCCCC-G--GGTTCSSCCEEECCSSC-CCSSSTT
T ss_pred ccccccCcEeecCcccccc------cch-hhhcCCCCCEEECCC-CCCCCC-c--ccCCCCCCcEEECCCCC-CCCCCCc
Confidence 4567788888888887765 443 356778888888876 466666 5 46677888888888765 5444212
Q ss_pred CCCCcCcccccCCccCeeeccccccceeecCCC--CcCCCCcccEEe
Q 044144 277 NRADEVIPYFVFPQLTTLILQYLPKLRCLYPGM--HTSEWPALEIFS 321 (356)
Q Consensus 277 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~--~~~~~~~L~~L~ 321 (356)
..... +++|+.|++.++ .++..+... ....+|+|+.|+
T Consensus 527 ~~l~~------l~~L~~L~L~~N-~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 527 QPLVS------CPRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGGGG------CTTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEEE
T ss_pred HHHhc------CCCCCEEEecCC-cCCCCccHHHHHHHHCcccCccC
Confidence 33333 778888888776 465554432 112356666664
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.72 E-value=4.1e-08 Score=90.81 Aligned_cols=158 Identities=18% Similarity=0.213 Sum_probs=96.5
Q ss_pred CcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCchhhhhccccccccccchhhhhcccccccCcccc
Q 044144 57 FPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFWLSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEK 136 (356)
Q Consensus 57 ~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~ 136 (356)
.+.++.|++++ .+++.++...+. ..+++|+.|+++++ ++..++. ..+
T Consensus 38 ~~~l~~L~Ls~-N~l~~l~~~~~~-~~l~~L~~L~L~~N-~i~~i~~------------------------------~~~ 84 (361)
T 2xot_A 38 PSYTALLDLSH-NNLSRLRAEWTP-TRLTNLHSLLLSHN-HLNFISS------------------------------EAF 84 (361)
T ss_dssp CTTCSEEECCS-SCCCEECTTSSS-SCCTTCCEEECCSS-CCCEECT------------------------------TTT
T ss_pred CCCCCEEECCC-CCCCccChhhhh-hcccccCEEECCCC-cCCccCh------------------------------hhc
Confidence 35677888887 456666443321 14677888887765 2222210 012
Q ss_pred cccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeEE
Q 044144 137 IELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKI 216 (356)
Q Consensus 137 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~ 216 (356)
..+++|+.|++++.. ++.++.. .+..+++|+.|++.+|+++.+
T Consensus 85 ~~l~~L~~L~Ls~N~-l~~~~~~------------------------------------~~~~l~~L~~L~L~~N~i~~~ 127 (361)
T 2xot_A 85 VPVPNLRYLDLSSNH-LHTLDEF------------------------------------LFSDLQALEVLLLYNNHIVVV 127 (361)
T ss_dssp TTCTTCCEEECCSSC-CCEECTT------------------------------------TTTTCTTCCEEECCSSCCCEE
T ss_pred cCCCCCCEEECCCCc-CCcCCHH------------------------------------HhCCCcCCCEEECCCCcccEE
Confidence 345778888887743 4433321 234578999999999988874
Q ss_pred cccCCCCCCCCCCCcCccEEeeccCcCccccchhhhh---hhcCCCCeEEEecCcccceeeccCCCCcCcccccCCc--c
Q 044144 217 WHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMI---GSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQ--L 291 (356)
Q Consensus 217 ~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~---~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~--L 291 (356)
+...+..+++|+.|++++ +++..+ +...+ ..+++|+.|+++++. ++.+. .+.... ++. +
T Consensus 128 ------~~~~~~~l~~L~~L~L~~-N~l~~l-~~~~~~~~~~l~~L~~L~L~~N~-l~~l~-~~~~~~------l~~~~l 191 (361)
T 2xot_A 128 ------DRNAFEDMAQLQKLYLSQ-NQISRF-PVELIKDGNKLPKLMLLDLSSNK-LKKLP-LTDLQK------LPAWVK 191 (361)
T ss_dssp ------CTTTTTTCTTCCEEECCS-SCCCSC-CGGGTC----CTTCCEEECCSSC-CCCCC-HHHHHH------SCHHHH
T ss_pred ------CHHHhCCcccCCEEECCC-CcCCee-CHHHhcCcccCCcCCEEECCCCC-CCccC-HHHhhh------ccHhhc
Confidence 222467889999999987 477777 65555 568899999999875 55442 111221 444 4
Q ss_pred Ceeeccccc
Q 044144 292 TTLILQYLP 300 (356)
Q Consensus 292 ~~L~l~~c~ 300 (356)
+.|++.++|
T Consensus 192 ~~l~l~~N~ 200 (361)
T 2xot_A 192 NGLYLHNNP 200 (361)
T ss_dssp TTEECCSSC
T ss_pred ceEEecCCC
Confidence 778887753
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.66 E-value=1e-07 Score=88.14 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=68.7
Q ss_pred cCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCC
Q 044144 199 ALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENR 278 (356)
Q Consensus 199 ~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~ 278 (356)
.+++|+.|++.+++++.+ +...|..+++|+.|++++ ++++.+ +...+..+++|+.|+++++. +..+. +..
T Consensus 62 ~l~~L~~L~L~~N~i~~i------~~~~~~~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~-~~~ 131 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFI------SSEAFVPVPNLRYLDLSS-NHLHTL-DEFLFSDLQALEVLLLYNNH-IVVVD-RNA 131 (361)
T ss_dssp CCTTCCEEECCSSCCCEE------CTTTTTTCTTCCEEECCS-SCCCEE-CTTTTTTCTTCCEEECCSSC-CCEEC-TTT
T ss_pred cccccCEEECCCCcCCcc------ChhhccCCCCCCEEECCC-CcCCcC-CHHHhCCCcCCCEEECCCCc-ccEEC-HHH
Confidence 456777777777766663 222355667777777766 356666 54556667777777777765 54442 223
Q ss_pred CCcCcccccCCccCeeeccccccceeecCCCCc--CCCCcccEEeeccCcCccccc
Q 044144 279 ADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHT--SEWPALEIFSVFRCDKLKIFA 332 (356)
Q Consensus 279 ~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~--~~~~~L~~L~i~~C~~l~~l~ 332 (356)
... +++|++|++.++ +++.++..... ..+++|+.|++.++ +++.+|
T Consensus 132 ~~~------l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~ 179 (361)
T 2xot_A 132 FED------MAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLP 179 (361)
T ss_dssp TTT------CTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSS-CCCCCC
T ss_pred hCC------cccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCC-CCCccC
Confidence 333 667777777665 56665543211 24667777777764 355555
No 118
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.65 E-value=3.9e-08 Score=81.20 Aligned_cols=110 Identities=18% Similarity=0.217 Sum_probs=79.2
Q ss_pred CCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCC
Q 044144 200 LPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRA 279 (356)
Q Consensus 200 l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 279 (356)
.++|+.|++++|+++.+ . .+..+++|+.|+++++ .+..+ +...+..+++|+.|+++++. +..+......
T Consensus 41 ~~~L~~L~Ls~N~l~~~--~------~l~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l 109 (176)
T 1a9n_A 41 LDQFDAIDFSDNEIRKL--D------GFPLLRRLKTLLVNNN-RICRI-GEGLDQALPDLTELILTNNS-LVELGDLDPL 109 (176)
T ss_dssp TTCCSEEECCSSCCCEE--C------CCCCCSSCCEEECCSS-CCCEE-CSCHHHHCTTCCEEECCSCC-CCCGGGGGGG
T ss_pred CCCCCEEECCCCCCCcc--c------ccccCCCCCEEECCCC-ccccc-CcchhhcCCCCCEEECCCCc-CCcchhhHhh
Confidence 35999999999988874 1 2667899999999874 67777 66667889999999999986 5554211123
Q ss_pred CcCcccccCCccCeeeccccccceeecCC--CCcCCCCcccEEeeccCcC
Q 044144 280 DEVIPYFVFPQLTTLILQYLPKLRCLYPG--MHTSEWPALEIFSVFRCDK 327 (356)
Q Consensus 280 ~~~~~~~~l~~L~~L~l~~c~~L~~~~~~--~~~~~~~~L~~L~i~~C~~ 327 (356)
.. +++|++|++.+++ +..++.. .....+++|+.|++.+++.
T Consensus 110 ~~------l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 110 AS------LKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp GG------CTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred hc------CCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 33 8899999998874 5555442 0125678889888887764
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.65 E-value=1.4e-07 Score=92.26 Aligned_cols=57 Identities=16% Similarity=0.122 Sum_probs=34.0
Q ss_pred CCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccC
Q 044144 30 QLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIF 102 (356)
Q Consensus 30 ~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~ 102 (356)
+|+.|+++++ +++.+. .. .+++|++|+++++ .++.+| ..+++|+.|+++++ ++..++
T Consensus 60 ~L~~L~Ls~n-~L~~lp-----~~--l~~~L~~L~Ls~N-~l~~ip------~~l~~L~~L~Ls~N-~l~~ip 116 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLP-----DN--LPPQITVLEITQN-ALISLP------ELPASLEYLDACDN-RLSTLP 116 (571)
T ss_dssp TCSEEECCSS-CCSCCC-----SC--CCTTCSEEECCSS-CCSCCC------CCCTTCCEEECCSS-CCSCCC
T ss_pred CccEEEeCCC-CCCccC-----Hh--HcCCCCEEECcCC-CCcccc------cccCCCCEEEccCC-CCCCcc
Confidence 7777777776 455431 11 1367777777774 455554 23677777777776 444444
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.62 E-value=3.4e-07 Score=78.46 Aligned_cols=130 Identities=15% Similarity=0.270 Sum_probs=94.6
Q ss_pred CCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCC
Q 044144 201 PNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRAD 280 (356)
Q Consensus 201 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 280 (356)
++|+.|++.+++++.+ +...+..+++|+.|+++++ ++..+ ....+..+++|+.|+++++. ++.+. +....
T Consensus 32 ~~l~~L~l~~n~i~~i------~~~~~~~l~~L~~L~Ls~N-~i~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l~-~~~f~ 101 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVI------PPGAFSPYKKLRRIDLSNN-QISEL-APDAFQGLRSLNSLVLYGNK-ITELP-KSLFE 101 (220)
T ss_dssp TTCCEEECCSSCCCEE------CTTSSTTCTTCCEEECCSS-CCCEE-CTTTTTTCSSCCEEECCSSC-CCCCC-TTTTT
T ss_pred cCCCEEECCCCcCCCc------CHhHhhCCCCCCEEECCCC-cCCCc-CHHHhhCCcCCCEEECCCCc-CCccC-HhHcc
Confidence 6899999999988884 3334778999999999884 67777 55677889999999999986 66552 22233
Q ss_pred cCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCccccccccc-CCCCCCCCCCCCC
Q 044144 281 EVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFAADLS-QNNENDQLGIPAQ 349 (356)
Q Consensus 281 ~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~~~~~-~~~~~~~~~~~~~ 349 (356)
. +++|++|++.++ +++.++... +..+++|+.|++.++. ++.++.+.. .......+.+.++
T Consensus 102 ~------l~~L~~L~L~~N-~l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 102 G------LFSLQLLLLNAN-KINCLRVDA-FQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp T------CTTCCEEECCSS-CCCCCCTTT-TTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred C------CCCCCEEECCCC-CCCEeCHHH-cCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCC
Confidence 3 889999999887 777776543 2678999999999864 777765422 2222334444444
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.60 E-value=6.5e-07 Score=81.51 Aligned_cols=81 Identities=10% Similarity=0.000 Sum_probs=59.9
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCcc-EEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeec
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLT-RLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIIS 275 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~-~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~ 275 (356)
...+++|+.+.+.++ ++.+ +...|..+++|+ .+.+.+ +++.+ +...+.+|++|+.+++.+.. ++.+.
T Consensus 246 F~~~~~L~~l~l~~n-i~~I------~~~aF~~~~~L~~~l~l~~--~l~~I-~~~aF~~c~~L~~l~l~~n~-i~~I~- 313 (329)
T 3sb4_A 246 FAQKKYLLKIKLPHN-LKTI------GQRVFSNCGRLAGTLELPA--SVTAI-EFGAFMGCDNLRYVLATGDK-ITTLG- 313 (329)
T ss_dssp TTTCTTCCEEECCTT-CCEE------CTTTTTTCTTCCEEEEECT--TCCEE-CTTTTTTCTTEEEEEECSSC-CCEEC-
T ss_pred hhCCCCCCEEECCcc-ccee------hHHHhhCChhccEEEEEcc--cceEE-chhhhhCCccCCEEEeCCCc-cCccc-
Confidence 356789999999886 6663 333588899999 999976 78888 77888999999999987654 66662
Q ss_pred cCCCCcCcccccCCccCeee
Q 044144 276 ENRADEVIPYFVFPQLTTLI 295 (356)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~L~ 295 (356)
.....+ +++|+.++
T Consensus 314 ~~aF~~------~~~L~~ly 327 (329)
T 3sb4_A 314 DELFGN------GVPSKLIY 327 (329)
T ss_dssp TTTTCT------TCCCCEEE
T ss_pred hhhhcC------Ccchhhhc
Confidence 233333 56666665
No 122
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.60 E-value=1.6e-09 Score=100.41 Aligned_cols=229 Identities=13% Similarity=0.006 Sum_probs=127.1
Q ss_pred cCCCcEEEEecCCCceEeecCCcccccccCc-ccceeeccccccccccccccccc---cCCCCccEEEEccCCCccccCc
Q 044144 28 FSQLKLLWVQNNPDFFCIVDSRAMVACDAFP-LLESLILHNLINMERIWIDQLKV---ESFNELKIIQAYNCDKLSNIFW 103 (356)
Q Consensus 28 l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~-~L~~L~l~~~~~l~~l~~~~~~~---~~l~~L~~L~l~~c~~l~~~~~ 103 (356)
.++|++|++++| .++..........+..++ +|++|+++++ .+.......+.. ..+++|++|++++|. +.....
T Consensus 21 ~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~ 97 (362)
T 3goz_A 21 PHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSS 97 (362)
T ss_dssp CTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCH
T ss_pred CCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHH
Confidence 445999999988 465331000002345566 8999999886 454432211110 113889999998874 332221
Q ss_pred hhhhhccccccccccchhhhhcccccccCccccccc-ccccEEecCCCCCcceeecCCCCCCCCCCCCCCcccccccccc
Q 044144 104 LSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIEL-AQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSS 182 (356)
Q Consensus 104 l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 182 (356)
-... +. +..+ ++|++|+++++. ++....
T Consensus 98 ~~l~-~~-------------------------l~~~~~~L~~L~Ls~N~-l~~~~~------------------------ 126 (362)
T 3goz_A 98 DELV-KT-------------------------LAAIPFTITVLDLGWND-FSSKSS------------------------ 126 (362)
T ss_dssp HHHH-HH-------------------------HHTSCTTCCEEECCSSC-GGGSCH------------------------
T ss_pred HHHH-HH-------------------------HHhCCCCccEEECcCCc-CCcHHH------------------------
Confidence 1100 00 1123 688999998864 322111
Q ss_pred ceeecCCcccccccccc-CCCcCeEEecceeeeEEcccCCCCCCCCCCCc-CccEEeeccCcCccccchh---hhhhhc-
Q 044144 183 SEITLDTSTLLFNEKVA-LPNLEALEISAINVDKIWHYNQIPAAVFPRFQ-NLTRLIVWHCNKLKYIFSA---SMIGSL- 256 (356)
Q Consensus 183 l~i~~~~~~~l~~~~~~-l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~-~L~~L~i~~c~~l~~l~~~---~~~~~l- 256 (356)
..+...+.. .++|++|++.+|++++..... ++. .+..++ +|++|++++| .+....+. ..+..+
T Consensus 127 --------~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-l~~-~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~ 195 (362)
T 3goz_A 127 --------SEFKQAFSNLPASITSLNLRGNDLGIKSSDE-LIQ-ILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIP 195 (362)
T ss_dssp --------HHHHHHHTTSCTTCCEEECTTSCGGGSCHHH-HHH-HHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSC
T ss_pred --------HHHHHHHHhCCCceeEEEccCCcCCHHHHHH-HHH-HHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCC
Confidence 001222233 359999999999777421111 111 122334 8999999986 56665232 233345
Q ss_pred CCCCeEEEecCcccceeeccCCCCcCccccc-CCccCeeeccccccceeecCC---CCcCCCCcccEEeeccCc
Q 044144 257 KHLQHLEVRFCEDLQEIISENRADEVIPYFV-FPQLTTLILQYLPKLRCLYPG---MHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 257 ~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~-l~~L~~L~l~~c~~L~~~~~~---~~~~~~~~L~~L~i~~C~ 326 (356)
++|++|++++|. +..... .... ..... .++|++|++.++ .++..+.. .....+++|+.|++.+|.
T Consensus 196 ~~L~~L~Ls~N~-i~~~~~-~~l~--~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 196 ASVTSLDLSANL-LGLKSY-AELA--YIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp TTCCEEECTTSC-GGGSCH-HHHH--HHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CCCCEEECCCCC-CChhHH-HHHH--HHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 599999999987 433100 0000 00111 258999999987 56654331 112567899999999986
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.59 E-value=2.9e-07 Score=75.85 Aligned_cols=110 Identities=19% Similarity=0.284 Sum_probs=78.7
Q ss_pred CCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCC
Q 044144 200 LPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRA 279 (356)
Q Consensus 200 l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~ 279 (356)
+++|+.|.+.+++++. ++...+..+++|++|+++++ ++..+ +...+..+++|+.|+++++. +..+. +...
T Consensus 27 ~~~l~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~-~~~~ 96 (177)
T 2o6r_A 27 PSSATRLELESNKLQS------LPHGVFDKLTQLTKLSLSQN-QIQSL-PDGVFDKLTKLTILYLHENK-LQSLP-NGVF 96 (177)
T ss_dssp CTTCSEEECCSSCCCC------CCTTTTTTCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTT
T ss_pred CCCCcEEEeCCCcccE------eCHHHhcCcccccEEECCCC-cceEe-ChhHccCCCccCEEECCCCC-ccccC-HHHh
Confidence 3688889998887766 33334667888999998774 67776 65666788899999998875 65542 2222
Q ss_pred CcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcC
Q 044144 280 DEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDK 327 (356)
Q Consensus 280 ~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~ 327 (356)
.. +++|++|++.++ +++.++... +..+++|++|++.+++-
T Consensus 97 ~~------l~~L~~L~l~~N-~l~~~~~~~-~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 97 DK------LTQLKELALDTN-QLKSVPDGI-FDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp TT------CTTCCEEECCSS-CCSCCCTTT-TTTCTTCCEEECCSSCB
T ss_pred hC------CcccCEEECcCC-cceEeCHHH-hcCCcccCEEEecCCCe
Confidence 33 778999999877 777776643 25678889998888763
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.59 E-value=2.9e-07 Score=77.07 Aligned_cols=87 Identities=24% Similarity=0.334 Sum_probs=37.1
Q ss_pred CCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeec
Q 044144 227 FPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLY 306 (356)
Q Consensus 227 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~ 306 (356)
+..+++|++|++++ ++++.+ +...+..+++|++|+++++. +..+. +..... +++|++|+++++ +++.+.
T Consensus 50 ~~~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~------l~~L~~L~L~~N-~l~~~~ 118 (192)
T 1w8a_A 50 FGRLPHLVKLELKR-NQLTGI-EPNAFEGASHIQELQLGENK-IKEIS-NKMFLG------LHQLKTLNLYDN-QISCVM 118 (192)
T ss_dssp GGGCTTCCEEECCS-SCCCCB-CTTTTTTCTTCCEEECCSCC-CCEEC-SSSSTT------CTTCCEEECCSS-CCCEEC
T ss_pred cccCCCCCEEECCC-CCCCCc-CHhHcCCcccCCEEECCCCc-CCccC-HHHhcC------CCCCCEEECCCC-cCCeeC
Confidence 33445555555544 234444 22334444555555555543 33332 111222 445555555444 344332
Q ss_pred CCCCcCCCCcccEEeeccC
Q 044144 307 PGMHTSEWPALEIFSVFRC 325 (356)
Q Consensus 307 ~~~~~~~~~~L~~L~i~~C 325 (356)
.... ..+++|+.|++.++
T Consensus 119 ~~~~-~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 119 PGSF-EHLNSLTSLNLASN 136 (192)
T ss_dssp TTSS-TTCTTCCEEECTTC
T ss_pred HHHh-hcCCCCCEEEeCCC
Confidence 2211 34445555555444
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.57 E-value=1.1e-07 Score=77.81 Aligned_cols=117 Identities=21% Similarity=0.157 Sum_probs=79.8
Q ss_pred cccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhh
Q 044144 176 STTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGS 255 (356)
Q Consensus 176 ~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~ 255 (356)
.+..++.|.++.+.-... ..+..+++|+.|++.+|+++.. +|. .+..+++|+.|+++++ .++.+.....+..
T Consensus 47 ~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~-----~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~ 118 (168)
T 2ell_A 47 EFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGG-----LDM-LAEKLPNLTHLNLSGN-KLKDISTLEPLKK 118 (168)
T ss_dssp GGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSC-----CCH-HHHHCTTCCEEECBSS-SCCSSGGGGGGSS
T ss_pred hCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchH-----HHH-HHhhCCCCCEEeccCC-ccCcchhHHHHhc
Confidence 445577777776664333 5667789999999999977762 222 2445899999999886 6777622256778
Q ss_pred cCCCCeEEEecCcccceeec--cCCCCcCcccccCCccCeeeccccccceeecCC
Q 044144 256 LKHLQHLEVRFCEDLQEIIS--ENRADEVIPYFVFPQLTTLILQYLPKLRCLYPG 308 (356)
Q Consensus 256 l~~L~~L~i~~c~~l~~i~~--~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~ 308 (356)
+++|+.|++++|+ +..+.. ..... .+++|++|++.+| .++.++..
T Consensus 119 l~~L~~L~l~~N~-l~~~~~~~~~~~~------~l~~L~~L~l~~n-~~~~~~~~ 165 (168)
T 2ell_A 119 LECLKSLDLFNCE-VTNLNDYRESVFK------LLPQLTYLDGYDR-EDQEAPDS 165 (168)
T ss_dssp CSCCCEEECCSSG-GGTSTTHHHHHHT------TCSSCCEETTEET-TSCBCCSS
T ss_pred CCCCCEEEeeCCc-CcchHHHHHHHHH------hCccCcEecCCCC-Chhhcccc
Confidence 8999999999986 544421 01222 3889999999888 45555443
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.53 E-value=3.8e-07 Score=76.53 Aligned_cols=80 Identities=20% Similarity=0.254 Sum_probs=34.2
Q ss_pred cccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCC
Q 044144 180 YSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHL 259 (356)
Q Consensus 180 l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L 259 (356)
++.|.++++.-..++..+..+++|+.|++++++++. ++...|..+++|++|++++ ++++.+ +...+..+++|
T Consensus 33 l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~------i~~~~f~~l~~L~~L~Ls~-N~l~~i-~~~~f~~l~~L 104 (193)
T 2wfh_A 33 VTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST------LSNQSFSNMTQLLTLILSY-NRLRCI-PPRTFDGLKSL 104 (193)
T ss_dssp CCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCC------CCTTTTTTCTTCCEEECCS-SCCCBC-CTTTTTTCTTC
T ss_pred CCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCE------eCHhHccCCCCCCEEECCC-CccCEe-CHHHhCCCCCC
Confidence 444444443333333344444445555554444443 2222234444455555444 234444 33334444445
Q ss_pred CeEEEecC
Q 044144 260 QHLEVRFC 267 (356)
Q Consensus 260 ~~L~i~~c 267 (356)
+.|+++++
T Consensus 105 ~~L~L~~N 112 (193)
T 2wfh_A 105 RLLSLHGN 112 (193)
T ss_dssp CEEECCSS
T ss_pred CEEECCCC
Confidence 55555443
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.47 E-value=2.4e-07 Score=74.09 Aligned_cols=37 Identities=19% Similarity=0.426 Sum_probs=18.1
Q ss_pred CCCCcCccEEeeccCcCccccchh---hhhhhcCCCCeEEEe
Q 044144 227 FPRFQNLTRLIVWHCNKLKYIFSA---SMIGSLKHLQHLEVR 265 (356)
Q Consensus 227 ~~~l~~L~~L~i~~c~~l~~l~~~---~~~~~l~~L~~L~i~ 265 (356)
+..+++|+.|+++++ .+... +. ..+..+++|+.|+++
T Consensus 109 ~~~l~~L~~L~l~~N-~l~~~-~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 109 LKKLENLKSLDLFNC-EVTNL-NDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp GGGCTTCCEEECTTC-GGGGS-TTHHHHHHHHCTTCCEETTB
T ss_pred HhhCCCCCEEeCcCC-cccch-HHHHHHHHHHCCCcccccCC
Confidence 334555555555553 34443 22 344555555555543
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.44 E-value=6.3e-07 Score=75.18 Aligned_cols=107 Identities=16% Similarity=0.233 Sum_probs=71.7
Q ss_pred CCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCC
Q 044144 201 PNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRAD 280 (356)
Q Consensus 201 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 280 (356)
++|+.|++.+++++. +|. .+..+++|+.|++++ +.++.+ +...+..+++|++|+++++. +..+. +....
T Consensus 31 ~~l~~L~L~~n~i~~------ip~-~~~~l~~L~~L~Ls~-N~i~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~-~~~f~ 99 (193)
T 2wfh_A 31 RDVTELYLDGNQFTL------VPK-ELSNYKHLTLIDLSN-NRISTL-SNQSFSNMTQLLTLILSYNR-LRCIP-PRTFD 99 (193)
T ss_dssp TTCCEEECCSSCCCS------CCG-GGGGCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCBCC-TTTTT
T ss_pred CCCCEEECCCCcCch------hHH-HhhcccCCCEEECCC-CcCCEe-CHhHccCCCCCCEEECCCCc-cCEeC-HHHhC
Confidence 578888888876665 332 366778888888876 466666 55666777888888888765 55552 22333
Q ss_pred cCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 281 EVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 281 ~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
. +++|++|+++++ +++.++.... ..+++|+.|++.+.+
T Consensus 100 ~------l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 100 G------LKSLRLLSLHGN-DISVVPEGAF-NDLSALSHLAIGANP 137 (193)
T ss_dssp T------CTTCCEEECCSS-CCCBCCTTTT-TTCTTCCEEECCSSC
T ss_pred C------CCCCCEEECCCC-CCCeeChhhh-hcCccccEEEeCCCC
Confidence 3 678888888775 6666665432 467778888777654
No 129
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=9.3e-08 Score=78.50 Aligned_cols=89 Identities=15% Similarity=0.240 Sum_probs=43.4
Q ss_pred CcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhh----cCCCCeEEEecCcccceeeccC
Q 044144 202 NLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGS----LKHLQHLEVRFCEDLQEIISEN 277 (356)
Q Consensus 202 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~----l~~L~~L~i~~c~~l~~i~~~~ 277 (356)
.|+.|++++|.+++..... +..+++|++|++++|..+++. ....+.. +++|++|++++|++++.-.. .
T Consensus 62 ~L~~LDLs~~~Itd~GL~~------L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~ 133 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDH------MEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGI-I 133 (176)
T ss_dssp CEEEEEEESCCCCGGGGGG------GTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-H
T ss_pred eEeEEeCcCCCccHHHHHH------hcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHH-H
Confidence 4666666665544421111 335566666666666666655 2222222 23566666666665533210 1
Q ss_pred CCCcCcccccCCccCeeecccccccee
Q 044144 278 RADEVIPYFVFPQLTTLILQYLPKLRC 304 (356)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~l~~c~~L~~ 304 (356)
... .+++|++|++++|+++++
T Consensus 134 ~L~------~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ALH------HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HGG------GCTTCCEEEEESCTTCCC
T ss_pred HHh------cCCCCCEEECCCCCCCCc
Confidence 111 155666666666665555
No 130
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=4.5e-08 Score=80.35 Aligned_cols=94 Identities=6% Similarity=-0.005 Sum_probs=70.7
Q ss_pred cCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCccc-ccCCccCeeeccccccceeecCCC
Q 044144 231 QNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPY-FVFPQLTTLILQYLPKLRCLYPGM 309 (356)
Q Consensus 231 ~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~-~~l~~L~~L~l~~c~~L~~~~~~~ 309 (356)
.+|+.|++++|. +++. ....+..+++|++|++++|..++.-.. ..... . ...++|++|+|++|+++++-....
T Consensus 61 ~~L~~LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL-~~L~~---~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCL-ERLSQ---LENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHH-HHHHT---CHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHH-HHHHh---cccccCCCCEEEcCCCCcCCHHHHHH
Confidence 479999999997 8777 445567899999999999997743210 00111 0 012479999999999999976654
Q ss_pred CcCCCCcccEEeeccCcCcccc
Q 044144 310 HTSEWPALEIFSVFRCDKLKIF 331 (356)
Q Consensus 310 ~~~~~~~L~~L~i~~C~~l~~l 331 (356)
. ..+++|++|++++|++++..
T Consensus 135 L-~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 135 L-HHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp G-GGCTTCCEEEEESCTTCCCH
T ss_pred H-hcCCCCCEEECCCCCCCCch
Confidence 4 46899999999999998763
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.40 E-value=5.1e-05 Score=70.95 Aligned_cols=220 Identities=11% Similarity=0.139 Sum_probs=104.3
Q ss_pred ccccCCCcEEEEecCCCceEeecCCcccccccCcccceeeccccccccccccccccccCCCCccEEEEccCCCccccCc-
Q 044144 25 TEGFSQLKLLWVQNNPDFFCIVDSRAMVACDAFPLLESLILHNLINMERIWIDQLKVESFNELKIIQAYNCDKLSNIFW- 103 (356)
Q Consensus 25 ~~~l~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~~l~~L~~L~l~~c~~l~~~~~- 103 (356)
+.++ +|+.+.+... ++.+... +... .+|+++.+.+ +++.++.+.+ ..+++|+.+++.+. +++.++.
T Consensus 132 F~~~-~L~~i~l~~~--i~~I~~~----aF~~-~~L~~i~lp~--~l~~I~~~aF--~~c~~L~~l~l~~n-~l~~I~~~ 198 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG--LKSIGDM----AFFN-STVQEIVFPS--TLEQLKEDIF--YYCYNLKKADLSKT-KITKLPAS 198 (401)
T ss_dssp TTTC-CCSEEECCTT--CCEECTT----TTTT-CCCCEEECCT--TCCEECSSTT--TTCTTCCEEECTTS-CCSEECTT
T ss_pred cccC-CccEEEeCCC--ccEECHH----hcCC-CCceEEEeCC--CccEehHHHh--hCcccCCeeecCCC-cceEechh
Confidence 3344 6888888653 7777222 1122 4688888875 5666644332 34678888888653 3343321
Q ss_pred ---hhhhhccccccccccchhhhhcccccccCcccccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCcccccccc
Q 044144 104 ---LSTVVNHSSTVVNCSKMKEIFAIGEEVDNSIEKIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTY 180 (356)
Q Consensus 104 ---l~~ll~~L~~i~~c~~L~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l 180 (356)
...+ +.+ .+. .+++.+. ...+..+++|+++.+.+ +++.+....+.. ..+
T Consensus 199 aF~~~~L-~~l-~lp--~~l~~I~--------~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~--------------~~L 250 (401)
T 4fdw_A 199 TFVYAGI-EEV-LLP--VTLKEIG--------SQAFLKTSQLKTIEIPE--NVSTIGQEAFRE--------------SGI 250 (401)
T ss_dssp TTTTCCC-SEE-ECC--TTCCEEC--------TTTTTTCTTCCCEECCT--TCCEECTTTTTT--------------CCC
T ss_pred hEeeccc-CEE-EeC--Cchheeh--------hhHhhCCCCCCEEecCC--CccCcccccccc--------------CCc
Confidence 1111 211 111 1122222 12344566777777754 455554444322 124
Q ss_pred ccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCC
Q 044144 181 SSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQ 260 (356)
Q Consensus 181 ~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~ 260 (356)
+.+.+...-..........+++|+.+.+.++.+..-.. ..++...|..+++|+.+.+. ++++.+ +...+.+|++|+
T Consensus 251 ~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~-~~I~~~aF~~c~~L~~l~l~--~~i~~I-~~~aF~~c~~L~ 326 (401)
T 4fdw_A 251 TTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPE-AMIHPYCLEGCPKLARFEIP--ESIRIL-GQGLLGGNRKVT 326 (401)
T ss_dssp SEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTT-CEECTTTTTTCTTCCEECCC--TTCCEE-CTTTTTTCCSCC
T ss_pred cEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcc-cEECHHHhhCCccCCeEEeC--CceEEE-hhhhhcCCCCcc
Confidence 44444222111112233455666666665542220000 00222235566666666664 245555 555566666666
Q ss_pred eEEEecCcccceeeccCCCCcCcccccCCccCeeecccc
Q 044144 261 HLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYL 299 (356)
Q Consensus 261 ~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c 299 (356)
.+.+.+. ++.+ ....... + +|+.+.+.+.
T Consensus 327 ~l~lp~~--l~~I-~~~aF~~------~-~L~~l~l~~n 355 (401)
T 4fdw_A 327 QLTIPAN--VTQI-NFSAFNN------T-GIKEVKVEGT 355 (401)
T ss_dssp EEEECTT--CCEE-CTTSSSS------S-CCCEEEECCS
T ss_pred EEEECcc--ccEE-cHHhCCC------C-CCCEEEEcCC
Confidence 6666432 4444 1222232 4 5666666543
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.37 E-value=5.6e-07 Score=74.15 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=74.9
Q ss_pred ccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchh-hhhhhcC
Q 044144 179 TYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSA-SMIGSLK 257 (356)
Q Consensus 179 ~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~-~~~~~l~ 257 (356)
.++.++++.+.-..+ ..+..+++|+.|++.+|+++.+ |...+..+++|+.|+++++ .+..+ +. ..+..++
T Consensus 43 ~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~L~~N-~i~~~-~~~~~l~~l~ 113 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRI------GEGLDQALPDLTELILTNN-SLVEL-GDLDPLASLK 113 (176)
T ss_dssp CCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEE------CSCHHHHCTTCCEEECCSC-CCCCG-GGGGGGGGCT
T ss_pred CCCEEECCCCCCCcc-cccccCCCCCEEECCCCccccc------CcchhhcCCCCCEEECCCC-cCCcc-hhhHhhhcCC
Confidence 466666666653333 5667789999999999988873 3323467899999999875 66776 53 4677899
Q ss_pred CCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccc
Q 044144 258 HLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLP 300 (356)
Q Consensus 258 ~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~ 300 (356)
+|+.|++++++ +..+. .. .......+++|+.|++.++.
T Consensus 114 ~L~~L~l~~N~-i~~~~--~~--~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 114 SLTYLCILRNP-VTNKK--HY--RLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSSG-GGGST--TH--HHHHHHHCTTCSEETTEECC
T ss_pred CCCEEEecCCC-CCCcH--hH--HHHHHHHCCccceeCCCcCC
Confidence 99999999987 44331 11 00012237899999998764
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.32 E-value=1.6e-06 Score=72.55 Aligned_cols=88 Identities=25% Similarity=0.303 Sum_probs=62.9
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeecc
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISE 276 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~ 276 (356)
+..+++|+.|++.+++++.+ +...+..+++|+.|++++ ++++.+ +...+..+++|++|+++++. +..+. +
T Consensus 50 ~~~l~~L~~L~Ls~N~l~~~------~~~~~~~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~-~ 119 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQLTGI------EPNAFEGASHIQELQLGE-NKIKEI-SNKMFLGLHQLKTLNLYDNQ-ISCVM-P 119 (192)
T ss_dssp GGGCTTCCEEECCSSCCCCB------CTTTTTTCTTCCEEECCS-CCCCEE-CSSSSTTCTTCCEEECCSSC-CCEEC-T
T ss_pred cccCCCCCEEECCCCCCCCc------CHhHcCCcccCCEEECCC-CcCCcc-CHHHhcCCCCCCEEECCCCc-CCeeC-H
Confidence 46678888888888877763 222366788888888877 467777 55666778888888888875 65553 3
Q ss_pred CCCCcCcccccCCccCeeeccccc
Q 044144 277 NRADEVIPYFVFPQLTTLILQYLP 300 (356)
Q Consensus 277 ~~~~~~~~~~~l~~L~~L~l~~c~ 300 (356)
..... +++|++|++.+++
T Consensus 120 ~~~~~------l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 120 GSFEH------LNSLTSLNLASNP 137 (192)
T ss_dssp TSSTT------CTTCCEEECTTCC
T ss_pred HHhhc------CCCCCEEEeCCCC
Confidence 33443 7788888887763
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.29 E-value=2.3e-06 Score=70.42 Aligned_cols=87 Identities=24% Similarity=0.410 Sum_probs=63.1
Q ss_pred ccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccC
Q 044144 198 VALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISEN 277 (356)
Q Consensus 198 ~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~ 277 (356)
..+++|++|++.+++++. +|...+..+++|+.|++++ ++++.+ +...+..+++|+.|+++++. +..+. +.
T Consensus 49 ~~l~~L~~L~l~~n~l~~------~~~~~~~~l~~L~~L~l~~-N~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~-~~ 118 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQIQS------LPDGVFDKLTKLTILYLHE-NKLQSL-PNGVFDKLTQLKELALDTNQ-LKSVP-DG 118 (177)
T ss_dssp TTCTTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CSCCC-TT
T ss_pred cCcccccEEECCCCcceE------eChhHccCCCccCEEECCC-CCcccc-CHHHhhCCcccCEEECcCCc-ceEeC-HH
Confidence 567889999999887776 4443466788999999977 467777 65667778899999998875 65542 22
Q ss_pred CCCcCcccccCCccCeeeccccc
Q 044144 278 RADEVIPYFVFPQLTTLILQYLP 300 (356)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~l~~c~ 300 (356)
.... +++|++|++.+++
T Consensus 119 ~~~~------l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 119 IFDR------LTSLQKIWLHTNP 135 (177)
T ss_dssp TTTT------CTTCCEEECCSSC
T ss_pred HhcC------CcccCEEEecCCC
Confidence 2233 7788888888764
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.20 E-value=4.1e-06 Score=68.92 Aligned_cols=83 Identities=24% Similarity=0.324 Sum_probs=56.2
Q ss_pred CCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCC
Q 044144 201 PNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRAD 280 (356)
Q Consensus 201 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 280 (356)
++|+.|++.+++++. ++...+..+++|+.|++++ ++++.+ +...+..+++|+.|+++++. +..+. +....
T Consensus 33 ~~L~~L~Ls~N~l~~------~~~~~~~~l~~L~~L~Ls~-N~l~~i-~~~~~~~l~~L~~L~L~~N~-l~~l~-~~~~~ 102 (174)
T 2r9u_A 33 TDKQRLWLNNNQITK------LEPGVFDHLVNLQQLYFNS-NKLTAI-PTGVFDKLTQLTQLDLNDNH-LKSIP-RGAFD 102 (174)
T ss_dssp TTCSEEECCSSCCCC------CCTTTTTTCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTT
T ss_pred CCCcEEEeCCCCccc------cCHHHhcCCcCCCEEECCC-CCCCcc-ChhHhCCcchhhEEECCCCc-cceeC-HHHhc
Confidence 678888888887766 3333466778888888876 467776 65666777888888888764 55542 22233
Q ss_pred cCcccccCCccCeeecccc
Q 044144 281 EVIPYFVFPQLTTLILQYL 299 (356)
Q Consensus 281 ~~~~~~~l~~L~~L~l~~c 299 (356)
. +++|++|++.++
T Consensus 103 ~------l~~L~~L~L~~N 115 (174)
T 2r9u_A 103 N------LKSLTHIYLYNN 115 (174)
T ss_dssp T------CTTCSEEECCSS
T ss_pred c------ccCCCEEEeCCC
Confidence 3 677888888765
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.19 E-value=4.1e-06 Score=68.55 Aligned_cols=83 Identities=25% Similarity=0.336 Sum_probs=54.8
Q ss_pred CCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCC
Q 044144 201 PNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRAD 280 (356)
Q Consensus 201 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 280 (356)
++|+.|++.+++++. ++...+..+++|+.|++++ ++++.+ +...+..+++|++|+++++. ++.+. +....
T Consensus 30 ~~l~~L~L~~N~i~~------~~~~~~~~l~~L~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~N~-l~~~~-~~~~~ 99 (170)
T 3g39_A 30 TTTQVLYLYDNQITK------LEPGVFDRLTQLTRLDLDN-NQLTVL-PAGVFDKLTQLTQLSLNDNQ-LKSIP-RGAFD 99 (170)
T ss_dssp TTCSEEECCSSCCCC------CCTTTTTTCTTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTT
T ss_pred CCCcEEEcCCCcCCc------cChhhhcCcccCCEEECCC-CCcCcc-ChhhccCCCCCCEEECCCCc-cCEeC-HHHhc
Confidence 677888888777766 3332466777888888876 467766 55666777788888887764 55542 22233
Q ss_pred cCcccccCCccCeeecccc
Q 044144 281 EVIPYFVFPQLTTLILQYL 299 (356)
Q Consensus 281 ~~~~~~~l~~L~~L~l~~c 299 (356)
. +++|++|++.+.
T Consensus 100 ~------l~~L~~L~L~~N 112 (170)
T 3g39_A 100 N------LKSLTHIWLLNN 112 (170)
T ss_dssp T------CTTCCEEECCSS
T ss_pred C------CCCCCEEEeCCC
Confidence 3 677777777765
No 137
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.12 E-value=3.2e-06 Score=85.39 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=74.2
Q ss_pred cccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceee
Q 044144 195 NEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEII 274 (356)
Q Consensus 195 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~ 274 (356)
..+..+++|+.|++.+|++.. +|...+ .+++|+.|+++++ .+..+ | ..+..+++|+.|+++++. +..+
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~~------l~~~~~-~l~~L~~L~Ls~N-~l~~l-p-~~~~~l~~L~~L~Ls~N~-l~~l- 285 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIFN------ISANIF-KYDFLTRLYLNGN-SLTEL-P-AEIKNLSNLRVLDLSHNR-LTSL- 285 (727)
T ss_dssp ----CCCCCCEEECTTSCCSC------CCGGGG-GCCSCSCCBCTTS-CCSCC-C-GGGGGGTTCCEEECTTSC-CSSC-
T ss_pred hhhccCCCCcEEECCCCCCCC------CChhhc-CCCCCCEEEeeCC-cCccc-C-hhhhCCCCCCEEeCcCCc-CCcc-
Confidence 345567788888888886665 333223 6788888888764 66655 5 345778888888888876 5544
Q ss_pred ccCCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcC
Q 044144 275 SENRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDK 327 (356)
Q Consensus 275 ~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~ 327 (356)
+..... +++|++|.|.++ .++.++... ..+++|+.|++.+++-
T Consensus 286 -p~~~~~------l~~L~~L~L~~N-~l~~lp~~~--~~l~~L~~L~L~~N~l 328 (727)
T 4b8c_D 286 -PAELGS------CFQLKYFYFFDN-MVTTLPWEF--GNLCNLQFLGVEGNPL 328 (727)
T ss_dssp -CSSGGG------GTTCSEEECCSS-CCCCCCSST--TSCTTCCCEECTTSCC
T ss_pred -ChhhcC------CCCCCEEECCCC-CCCccChhh--hcCCCccEEeCCCCcc
Confidence 344443 778888888776 677776653 6778888888887763
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.10 E-value=1.9e-07 Score=78.54 Aligned_cols=60 Identities=22% Similarity=0.266 Sum_probs=27.4
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecC
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFC 267 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c 267 (356)
+..+++|+.|++.+|+++. +| .+..+++|+.|+++++ .+..+ | .....+++|+.|++++|
T Consensus 44 ~~~l~~L~~L~ls~n~l~~------l~--~~~~l~~L~~L~l~~n-~l~~l-~-~~~~~~~~L~~L~L~~N 103 (198)
T 1ds9_A 44 LSTLKACKHLALSTNNIEK------IS--SLSGMENLRILSLGRN-LIKKI-E-NLDAVADTLEELWISYN 103 (198)
T ss_dssp HHHTTTCSEEECSEEEESC------CC--CHHHHTTCCEEEEEEE-EECSC-S-SHHHHHHHCSEEEEEEE
T ss_pred HhcCCCCCEEECCCCCCcc------cc--ccccCCCCCEEECCCC-Ccccc-c-chhhcCCcCCEEECcCC
Confidence 3444555555555554444 22 1334455555555443 33333 3 23333455555555554
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.05 E-value=1.5e-05 Score=65.14 Aligned_cols=104 Identities=16% Similarity=0.259 Sum_probs=79.8
Q ss_pred CcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCc
Q 044144 202 NLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADE 281 (356)
Q Consensus 202 ~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~ 281 (356)
+.+.+++++++++. +|... .++|+.|++++ ++++.+ +...+..+++|+.|+++++. ++.+. +.....
T Consensus 10 ~~~~l~~s~n~l~~------ip~~~---~~~l~~L~L~~-N~i~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l~-~~~f~~ 76 (170)
T 3g39_A 10 SGTTVDCSGKSLAS------VPTGI---PTTTQVLYLYD-NQITKL-EPGVFDRLTQLTRLDLDNNQ-LTVLP-AGVFDK 76 (170)
T ss_dssp ETTEEECTTSCCSS------CCSCC---CTTCSEEECCS-SCCCCC-CTTTTTTCTTCSEEECCSSC-CCCCC-TTTTTT
T ss_pred CCCEEEeCCCCcCc------cCccC---CCCCcEEEcCC-CcCCcc-ChhhhcCcccCCEEECCCCC-cCccC-hhhccC
Confidence 45788888887776 44322 37899999987 578887 55777889999999999986 76663 222334
Q ss_pred CcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 282 VIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 282 ~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
+++|++|+++++ +++.++.... ..+++|+.|++.+.+
T Consensus 77 ------l~~L~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 77 ------LTQLTQLSLNDN-QLKSIPRGAF-DNLKSLTHIWLLNNP 113 (170)
T ss_dssp ------CTTCCEEECCSS-CCCCCCTTTT-TTCTTCCEEECCSSC
T ss_pred ------CCCCCEEECCCC-ccCEeCHHHh-cCCCCCCEEEeCCCC
Confidence 889999999887 7888876532 678999999998865
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.03 E-value=1.9e-05 Score=64.89 Aligned_cols=103 Identities=20% Similarity=0.254 Sum_probs=78.6
Q ss_pred cCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcC
Q 044144 203 LEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEV 282 (356)
Q Consensus 203 L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~ 282 (356)
-+.+++.+++++. +|.. + .++|+.|++++ ++++.+ +...+..+++|+.|+++++. +..+. +.....
T Consensus 14 ~~~l~~~~n~l~~------iP~~-~--~~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~~~- 79 (174)
T 2r9u_A 14 QTLVNCQNIRLAS------VPAG-I--PTDKQRLWLNN-NQITKL-EPGVFDHLVNLQQLYFNSNK-LTAIP-TGVFDK- 79 (174)
T ss_dssp SSEEECCSSCCSS------CCSC-C--CTTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTT-
T ss_pred CcEEEeCCCCCCc------cCCC-c--CCCCcEEEeCC-CCcccc-CHHHhcCCcCCCEEECCCCC-CCccC-hhHhCC-
Confidence 3678888877766 4542 2 38899999987 578887 55778889999999999985 76663 222333
Q ss_pred cccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCc
Q 044144 283 IPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCD 326 (356)
Q Consensus 283 ~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~ 326 (356)
+++|++|+++++ +++.++... +..+++|+.|++.+++
T Consensus 80 -----l~~L~~L~L~~N-~l~~l~~~~-~~~l~~L~~L~L~~N~ 116 (174)
T 2r9u_A 80 -----LTQLTQLDLNDN-HLKSIPRGA-FDNLKSLTHIYLYNNP 116 (174)
T ss_dssp -----CTTCCEEECCSS-CCCCCCTTT-TTTCTTCSEEECCSSC
T ss_pred -----cchhhEEECCCC-ccceeCHHH-hccccCCCEEEeCCCC
Confidence 889999999886 788887653 2678999999999876
No 141
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.99 E-value=0.0009 Score=62.45 Aligned_cols=110 Identities=9% Similarity=0.085 Sum_probs=60.4
Q ss_pred CCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcC----ccccchhhhhhhcCCCCeEEEecCcccceeecc
Q 044144 201 PNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNK----LKYIFSASMIGSLKHLQHLEVRFCEDLQEIISE 276 (356)
Q Consensus 201 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~----l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~ 276 (356)
.+|+.+.+.+ .++. ++...|..+++|+.+.+.+... ...+ +...+..|++|+.+++.+ .++.+. .
T Consensus 248 ~~L~~i~lp~-~i~~------I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~aF~~c~~L~~l~l~~--~i~~I~-~ 316 (401)
T 4fdw_A 248 SGITTVKLPN-GVTN------IASRAFYYCPELAEVTTYGSTFNDDPEAMI-HPYCLEGCPKLARFEIPE--SIRILG-Q 316 (401)
T ss_dssp CCCSEEEEET-TCCE------ECTTTTTTCTTCCEEEEESSCCCCCTTCEE-CTTTTTTCTTCCEECCCT--TCCEEC-T
T ss_pred CCccEEEeCC-CccE------EChhHhhCCCCCCEEEeCCccccCCcccEE-CHHHhhCCccCCeEEeCC--ceEEEh-h
Confidence 4566666633 3443 2222366677777777754211 1124 556666777777777763 354442 2
Q ss_pred CCCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEeeccCcCccccc
Q 044144 277 NRADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSVFRCDKLKIFA 332 (356)
Q Consensus 277 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i~~C~~l~~l~ 332 (356)
..... +++|+.+.|.+ +++.+..... ..+ +|+.+.+.+. .+..++
T Consensus 317 ~aF~~------c~~L~~l~lp~--~l~~I~~~aF-~~~-~L~~l~l~~n-~~~~l~ 361 (401)
T 4fdw_A 317 GLLGG------NRKVTQLTIPA--NVTQINFSAF-NNT-GIKEVKVEGT-TPPQVF 361 (401)
T ss_dssp TTTTT------CCSCCEEEECT--TCCEECTTSS-SSS-CCCEEEECCS-SCCBCC
T ss_pred hhhcC------CCCccEEEECc--cccEEcHHhC-CCC-CCCEEEEcCC-CCcccc
Confidence 33333 56777777743 4667665542 445 7777777764 334443
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.90 E-value=0.0015 Score=60.56 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=50.7
Q ss_pred CCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceee
Q 044144 226 VFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCL 305 (356)
Q Consensus 226 ~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~ 305 (356)
.+..+.+|+.+.+.+ .++.+ +...+.++++|+.+++.+ .++.+ ......+ +++|+.+.+.. +++.+
T Consensus 292 ~F~~~~~L~~i~l~~--~i~~I-~~~aF~~c~~L~~i~lp~--~v~~I-~~~aF~~------c~~L~~i~lp~--~l~~I 357 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLD--SVKFI-GEEAFESCTSLVSIDLPY--LVEEI-GKRSFRG------CTSLSNINFPL--SLRKI 357 (394)
T ss_dssp TTTTCTTCCEEEECT--TCCEE-CTTTTTTCTTCCEECCCT--TCCEE-CTTTTTT------CTTCCEECCCT--TCCEE
T ss_pred ccccccccccccccc--cccee-chhhhcCCCCCCEEEeCC--cccEE-hHHhccC------CCCCCEEEECc--cccEe
Confidence 355667777777743 46666 556677778888877753 25454 2233333 66777777743 36666
Q ss_pred cCCCCcCCCCcccEEeec
Q 044144 306 YPGMHTSEWPALEIFSVF 323 (356)
Q Consensus 306 ~~~~~~~~~~~L~~L~i~ 323 (356)
.... +..|++|+++++.
T Consensus 358 ~~~a-F~~C~~L~~i~lp 374 (394)
T 4fs7_A 358 GANA-FQGCINLKKVELP 374 (394)
T ss_dssp CTTT-BTTCTTCCEEEEE
T ss_pred hHHH-hhCCCCCCEEEEC
Confidence 5554 2566777777664
No 143
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.85 E-value=2.2e-05 Score=76.90 Aligned_cols=107 Identities=16% Similarity=0.255 Sum_probs=84.8
Q ss_pred CCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCC
Q 044144 201 PNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRAD 280 (356)
Q Consensus 201 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~ 280 (356)
..|+.|++++|+++. +|. +..+++|+.|+++++ +++.+ |. .++.+++|+.|+++++. +..+ + ...
T Consensus 441 ~~L~~L~Ls~n~l~~------lp~--~~~l~~L~~L~Ls~N-~l~~l-p~-~~~~l~~L~~L~Ls~N~-l~~l--p-~l~ 505 (567)
T 1dce_A 441 ADVRVLHLAHKDLTV------LCH--LEQLLLVTHLDLSHN-RLRAL-PP-ALAALRCLEVLQASDNA-LENV--D-GVA 505 (567)
T ss_dssp TTCSEEECTTSCCSS------CCC--GGGGTTCCEEECCSS-CCCCC-CG-GGGGCTTCCEEECCSSC-CCCC--G-GGT
T ss_pred cCceEEEecCCCCCC------CcC--ccccccCcEeecCcc-ccccc-ch-hhhcCCCCCEEECCCCC-CCCC--c-ccC
Confidence 469999999998877 554 678999999999884 77776 64 66889999999999986 6654 2 344
Q ss_pred cCcccccCCccCeeeccccccceeec--CCCCcCCCCcccEEeeccCcCccccc
Q 044144 281 EVIPYFVFPQLTTLILQYLPKLRCLY--PGMHTSEWPALEIFSVFRCDKLKIFA 332 (356)
Q Consensus 281 ~~~~~~~l~~L~~L~l~~c~~L~~~~--~~~~~~~~~~L~~L~i~~C~~l~~l~ 332 (356)
. +++|++|+++++ +++.+. ... ..+++|+.|++.+++ ++.+|
T Consensus 506 ~------l~~L~~L~Ls~N-~l~~~~~p~~l--~~l~~L~~L~L~~N~-l~~~~ 549 (567)
T 1dce_A 506 N------LPRLQELLLCNN-RLQQSAAIQPL--VSCPRLVLLNLQGNS-LCQEE 549 (567)
T ss_dssp T------CSSCCEEECCSS-CCCSSSTTGGG--GGCTTCCEEECTTSG-GGGSS
T ss_pred C------CCCCcEEECCCC-CCCCCCCcHHH--hcCCCCCEEEecCCc-CCCCc
Confidence 4 899999999887 788774 333 679999999999976 65554
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.85 E-value=7e-07 Score=75.05 Aligned_cols=87 Identities=18% Similarity=0.172 Sum_probs=63.0
Q ss_pred ccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeec
Q 044144 196 EKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIIS 275 (356)
Q Consensus 196 ~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~ 275 (356)
.+..+++|+.|++.+|+++. +|. .+..+++|+.|+++++ ++..+ + .+..+++|+.|+++++. +..+..
T Consensus 65 ~~~~l~~L~~L~l~~n~l~~------l~~-~~~~~~~L~~L~L~~N-~l~~l-~--~~~~l~~L~~L~l~~N~-i~~~~~ 132 (198)
T 1ds9_A 65 SLSGMENLRILSLGRNLIKK------IEN-LDAVADTLEELWISYN-QIASL-S--GIEKLVNLRVLYMSNNK-ITNWGE 132 (198)
T ss_dssp CHHHHTTCCEEEEEEEEECS------CSS-HHHHHHHCSEEEEEEE-ECCCH-H--HHHHHHHSSEEEESEEE-CCCHHH
T ss_pred ccccCCCCCEEECCCCCccc------ccc-hhhcCCcCCEEECcCC-cCCcC-C--ccccCCCCCEEECCCCc-CCchhH
Confidence 44667899999999998875 443 2445689999999885 67776 5 46778999999999975 544321
Q ss_pred cCCCCcCcccccCCccCeeeccccc
Q 044144 276 ENRADEVIPYFVFPQLTTLILQYLP 300 (356)
Q Consensus 276 ~~~~~~~~~~~~l~~L~~L~l~~c~ 300 (356)
...... +++|++|++.+++
T Consensus 133 ~~~l~~------l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 133 IDKLAA------LDKLEDLLLAGNP 151 (198)
T ss_dssp HHHHTT------TTTCSEEEECSCH
T ss_pred HHHHhc------CCCCCEEEecCCc
Confidence 122333 7899999998874
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.80 E-value=5.2e-05 Score=69.21 Aligned_cols=90 Identities=17% Similarity=0.236 Sum_probs=64.7
Q ss_pred ccccccccCCCcCeEEecc-eeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCccc
Q 044144 192 LLFNEKVALPNLEALEISA-INVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDL 270 (356)
Q Consensus 192 ~l~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l 270 (356)
.++. +..+++|+.|+|.+ ++++.+ |...|..+++|+.|++++ +++..+ +...+..+++|+.|+++++. +
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~------~~~~~~~l~~L~~L~l~~-N~l~~~-~~~~~~~l~~L~~L~l~~N~-l 92 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHL------ELRDLRGLGELRNLTIVK-SGLRFV-APDAFHFTPRLSRLNLSFNA-L 92 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEE------CGGGSCSCCCCSEEECCS-SCCCEE-CTTGGGSCSCCCEEECCSSC-C
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCc------ChhHhccccCCCEEECCC-Ccccee-CHHHhcCCcCCCEEeCCCCc-c
Confidence 3555 77788899999986 688873 333477889999999987 478887 65777888999999999865 6
Q ss_pred ceeeccCCCCcCcccccCCccCeeecccc
Q 044144 271 QEIISENRADEVIPYFVFPQLTTLILQYL 299 (356)
Q Consensus 271 ~~i~~~~~~~~~~~~~~l~~L~~L~l~~c 299 (356)
..+. +..... + .|+.|.+.++
T Consensus 93 ~~~~-~~~~~~------~-~L~~l~l~~N 113 (347)
T 2ifg_A 93 ESLS-WKTVQG------L-SLQELVLSGN 113 (347)
T ss_dssp SCCC-STTTCS------C-CCCEEECCSS
T ss_pred ceeC-HHHccc------C-CceEEEeeCC
Confidence 5552 222221 2 3888888765
No 146
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.80 E-value=2.2e-05 Score=79.22 Aligned_cols=108 Identities=20% Similarity=0.191 Sum_probs=63.9
Q ss_pred ccccccccEEecCCCCCcceeecCCCCCCCCCCCCCCccccccccccceeecCCccccccccccCCCcCeEEecceeeeE
Q 044144 136 KIELAQLRYLSLGNLPEVTSFCREVKTPSASPNRPASQEESTTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDK 215 (356)
Q Consensus 136 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~ 215 (356)
+..++.|+.|+++++. +..++...+ .+..|+.|.++.+.-..++..+..+++|+.|+|++|+++.
T Consensus 220 ~~~l~~L~~L~Ls~n~-l~~l~~~~~--------------~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~ 284 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ-IFNISANIF--------------KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTS 284 (727)
T ss_dssp --CCCCCCEEECTTSC-CSCCCGGGG--------------GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSS
T ss_pred hccCCCCcEEECCCCC-CCCCChhhc--------------CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCc
Confidence 5577888888888764 334443322 3344666666666544555556666677777777666554
Q ss_pred EcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCc
Q 044144 216 IWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 216 ~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 268 (356)
+|. .+..+++|+.|+++++ .+..+ |.. ++.+++|+.|+++++.
T Consensus 285 ------lp~-~~~~l~~L~~L~L~~N-~l~~l-p~~-~~~l~~L~~L~L~~N~ 327 (727)
T 4b8c_D 285 ------LPA-ELGSCFQLKYFYFFDN-MVTTL-PWE-FGNLCNLQFLGVEGNP 327 (727)
T ss_dssp ------CCS-SGGGGTTCSEEECCSS-CCCCC-CSS-TTSCTTCCCEECTTSC
T ss_pred ------cCh-hhcCCCCCCEEECCCC-CCCcc-Chh-hhcCCCccEEeCCCCc
Confidence 333 2455666777776654 55555 533 5566667777776665
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.71 E-value=3.8e-05 Score=70.78 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=9.3
Q ss_pred ccccccEEecCCC
Q 044144 138 ELAQLRYLSLGNL 150 (356)
Q Consensus 138 ~~~~L~~L~l~~~ 150 (356)
.+|+|++|.++++
T Consensus 170 ~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 170 AMPLLNNLKIKGT 182 (362)
T ss_dssp TCTTCCEEEEECC
T ss_pred cCCCCcEEEEeCC
Confidence 4577888887765
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.68 E-value=9.3e-05 Score=67.50 Aligned_cols=84 Identities=20% Similarity=0.150 Sum_probs=62.8
Q ss_pred cccccccceeec-CCccccc-cccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhh
Q 044144 176 STTTYSSSEITL-DTSTLLF-NEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMI 253 (356)
Q Consensus 176 ~~~~l~~l~i~~-~~~~~l~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~ 253 (356)
.+..++.|++++ +.-..++ ..+..+++|+.|+|++|+++.+ +...|..+++|+.|++++ +++..+ |...+
T Consensus 29 ~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~------~~~~~~~l~~L~~L~l~~-N~l~~~-~~~~~ 100 (347)
T 2ifg_A 29 GAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV------APDAFHFTPRLSRLNLSF-NALESL-SWKTV 100 (347)
T ss_dssp SCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE------CTTGGGSCSCCCEEECCS-SCCSCC-CSTTT
T ss_pred CCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee------CHHHhcCCcCCCEEeCCC-Ccccee-CHHHc
Confidence 445688888875 5544444 4577899999999999988884 333477889999999987 678887 66666
Q ss_pred hhcCCCCeEEEecCc
Q 044144 254 GSLKHLQHLEVRFCE 268 (356)
Q Consensus 254 ~~l~~L~~L~i~~c~ 268 (356)
..++ |+.|++.+++
T Consensus 101 ~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 101 QGLS-LQELVLSGNP 114 (347)
T ss_dssp CSCC-CCEEECCSSC
T ss_pred ccCC-ceEEEeeCCC
Confidence 6555 9999998865
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.38 E-value=4.1e-06 Score=77.68 Aligned_cols=68 Identities=16% Similarity=0.043 Sum_probs=29.0
Q ss_pred ccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccch---hhhhhhcCCCCeEEEecCc
Q 044144 198 VALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFS---ASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 198 ~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~---~~~~~~l~~L~~L~i~~c~ 268 (356)
...++|++|++++|.+++.-... ++. .+...++|+.|++++| .+.+... ...+...++|++|++++|.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~-L~~-~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLEL-LAA-QLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHH-HHH-HGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred hcCCCcCEEeCCCCCCCcHHHHH-HHH-HHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 34455666666665444310000 000 1223345666666554 3333211 1122334556666666554
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.35 E-value=0.00019 Score=66.02 Aligned_cols=136 Identities=16% Similarity=0.119 Sum_probs=71.2
Q ss_pred ccccccceeecCCccccccccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCc-------Cccccch
Q 044144 177 TTTYSSSEITLDTSTLLFNEKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCN-------KLKYIFS 249 (356)
Q Consensus 177 ~~~l~~l~i~~~~~~~l~~~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~-------~l~~l~~ 249 (356)
.+.++.|.+.++....+.. + ..++|+.|++..|.++...... + ....+|+|++|+++.+. .+..+.+
T Consensus 171 ~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~-l---~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVED-I---LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp CTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHH-H---HHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred CCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHH-H---HHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 3457777777664333332 2 3678888888766554310000 0 01146788888875321 1222211
Q ss_pred hhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceee-----cCCCCcCCCCcccEEeecc
Q 044144 250 ASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCL-----YPGMHTSEWPALEIFSVFR 324 (356)
Q Consensus 250 ~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~-----~~~~~~~~~~~L~~L~i~~ 324 (356)
......+|+|+.|.+.+|.--.... ..... ...+++|++|+|+.+ .+... ..+. ..+++|+.|++++
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~--~~la~---a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L--~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVV--EMFLE---SDILPQLETMDISAG-VLTDEGARLLLDHV--DKIKHLKFINMKY 316 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHH--HHHHH---CSSGGGCSEEECCSS-CCBHHHHHHHHTTH--HHHTTCSEEECCS
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHH--HHHHh---CccCCCCCEEECCCC-CCChHHHHHHHhhc--ccCCcceEEECCC
Confidence 1111347888888888876321110 00000 012678888888654 56553 2221 3467888888887
Q ss_pred Cc
Q 044144 325 CD 326 (356)
Q Consensus 325 C~ 326 (356)
|.
T Consensus 317 n~ 318 (362)
T 2ra8_A 317 NY 318 (362)
T ss_dssp BB
T ss_pred Cc
Confidence 74
No 151
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.29 E-value=0.019 Score=53.07 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=17.6
Q ss_pred CCccCeeeccccccceeecCCCCcCCCCcccEEee
Q 044144 288 FPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSV 322 (356)
Q Consensus 288 l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i 322 (356)
+++|+.+.|.+ .++.+.... +..|++|+.+++
T Consensus 319 c~~L~~i~lp~--~v~~I~~~a-F~~c~~L~~i~l 350 (394)
T 4fs7_A 319 CTSLVSIDLPY--LVEEIGKRS-FRGCTSLSNINF 350 (394)
T ss_dssp CTTCCEECCCT--TCCEECTTT-TTTCTTCCEECC
T ss_pred CCCCCEEEeCC--cccEEhHHh-ccCCCCCCEEEE
Confidence 56777777642 355554443 244566666544
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.15 E-value=0.074 Score=48.65 Aligned_cols=104 Identities=14% Similarity=0.183 Sum_probs=58.5
Q ss_pred ccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccC
Q 044144 198 VALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISEN 277 (356)
Q Consensus 198 ~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~ 277 (356)
..+.+|+.+.+-.. ++.+ ....|..+.+|+.+.+. .+++.+ +...+..+++|+.+.+.+.. ++.+ ...
T Consensus 237 ~~~~~L~~i~lp~~-v~~I------~~~aF~~~~~l~~i~l~--~~i~~i-~~~aF~~c~~L~~i~l~~~~-i~~I-~~~ 304 (379)
T 4h09_A 237 YGMKALDEIAIPKN-VTSI------GSFLLQNCTALKTLNFY--AKVKTV-PYLLCSGCSNLTKVVMDNSA-IETL-EPR 304 (379)
T ss_dssp TTCSSCCEEEECTT-CCEE------CTTTTTTCTTCCEEEEC--CCCSEE-CTTTTTTCTTCCEEEECCTT-CCEE-CTT
T ss_pred cCCccceEEEcCCC-ccEe------Cccccceeehhcccccc--ccceec-cccccccccccccccccccc-ccee-hhh
Confidence 34556666666543 3332 12235566777777774 356666 55667777888888776543 4444 223
Q ss_pred CCCcCcccccCCccCeeeccccccceeecCCCCcCCCCcccEEee
Q 044144 278 RADEVIPYFVFPQLTTLILQYLPKLRCLYPGMHTSEWPALEIFSV 322 (356)
Q Consensus 278 ~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~~~~~~~~L~~L~i 322 (356)
.... +++|+.+.|-+ +++.+.... +..|++|+.+.+
T Consensus 305 aF~~------c~~L~~i~lp~--~l~~I~~~a-F~~C~~L~~i~i 340 (379)
T 4h09_A 305 VFMD------CVKLSSVTLPT--ALKTIQVYA-FKNCKALSTISY 340 (379)
T ss_dssp TTTT------CTTCCEEECCT--TCCEECTTT-TTTCTTCCCCCC
T ss_pred hhcC------CCCCCEEEcCc--cccEEHHHH-hhCCCCCCEEEE
Confidence 3333 56777777742 466665543 245566666655
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.12 E-value=0.099 Score=48.16 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=51.9
Q ss_pred CCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeeccCCCCcCcccccCCccCeeeccccccceeec
Q 044144 227 FPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISENRADEVIPYFVFPQLTTLILQYLPKLRCLY 306 (356)
Q Consensus 227 ~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~ 306 (356)
|..+++|+.+.+. ..++.+ +...+.+|.+|+.++|.+ .++.| ....... +++|+.+.|-+ +++.+.
T Consensus 284 F~~c~~L~~i~l~--~~i~~I-~~~aF~~c~~L~~i~lp~--~v~~I-~~~aF~~------C~~L~~i~ip~--sv~~I~ 349 (394)
T 4gt6_A 284 FMNCPALQDIEFS--SRITEL-PESVFAGCISLKSIDIPE--GITQI-LDDAFAG------CEQLERIAIPS--SVTKIP 349 (394)
T ss_dssp TTTCTTCCEEECC--TTCCEE-CTTTTTTCTTCCEEECCT--TCCEE-CTTTTTT------CTTCCEEEECT--TCCBCC
T ss_pred cccccccccccCC--Cccccc-CceeecCCCCcCEEEeCC--cccEe-hHhHhhC------CCCCCEEEECc--ccCEEh
Confidence 5566777777774 356666 666777778888887764 25455 2233333 67788887742 466665
Q ss_pred CCCCcCCCCcccEEeecc
Q 044144 307 PGMHTSEWPALEIFSVFR 324 (356)
Q Consensus 307 ~~~~~~~~~~L~~L~i~~ 324 (356)
... +..|++|+.+++.+
T Consensus 350 ~~a-F~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 350 ESA-FSNCTALNNIEYSG 366 (394)
T ss_dssp GGG-GTTCTTCCEEEESS
T ss_pred HhH-hhCCCCCCEEEECC
Confidence 443 25677787776654
No 154
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.07 E-value=0.039 Score=50.94 Aligned_cols=37 Identities=14% Similarity=0.226 Sum_probs=21.7
Q ss_pred CCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEe
Q 044144 226 VFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVR 265 (356)
Q Consensus 226 ~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~ 265 (356)
.|..+.+|+.+.+.+ .++.+ ....+.+|.+|+++.|-
T Consensus 306 aF~~c~~L~~i~lp~--~v~~I-~~~aF~~C~~L~~i~ip 342 (394)
T 4gt6_A 306 VFAGCISLKSIDIPE--GITQI-LDDAFAGCEQLERIAIP 342 (394)
T ss_dssp TTTTCTTCCEEECCT--TCCEE-CTTTTTTCTTCCEEEEC
T ss_pred eecCCCCcCEEEeCC--cccEe-hHhHhhCCCCCCEEEEC
Confidence 355566666666642 45555 44556666666666664
No 155
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.28 E-value=0.00017 Score=66.73 Aligned_cols=12 Identities=17% Similarity=0.180 Sum_probs=9.5
Q ss_pred ccccEEecCCCC
Q 044144 140 AQLRYLSLGNLP 151 (356)
Q Consensus 140 ~~L~~L~l~~~~ 151 (356)
++|++|+++++.
T Consensus 101 ~~L~~L~Ls~n~ 112 (372)
T 3un9_A 101 HALDEVNLASCQ 112 (372)
T ss_dssp SCEEEEECTTCC
T ss_pred CCceEEEecCCC
Confidence 688888888763
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.46 E-value=0.0032 Score=55.14 Aligned_cols=65 Identities=22% Similarity=0.207 Sum_probs=41.2
Q ss_pred ccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCc
Q 044144 198 VALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 198 ~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 268 (356)
..+|+|+.|++++|+++.+-. +|. .+..+++|+.|++++ +++..+.....+..+ +|++|++.+++
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~---l~~-~~~~l~~L~~L~Ls~-N~i~~~~~l~~l~~l-~L~~L~L~~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDD---MSS-IVQKAPNLKILNLSG-NELKSERELDKIKGL-KLEELWLDGNS 231 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGG---GTT-HHHHSTTCCEEECTT-SCCCSGGGGGGGTTS-CCSEEECTTST
T ss_pred hhCCCCCEEECCCCCCCCCcc---chh-HHhhCCCCCEEECCC-CccCCchhhhhcccC-CcceEEccCCc
Confidence 457888888888887776311 111 233678888888876 566665222222233 78888888876
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.47 E-value=0.035 Score=48.48 Aligned_cols=65 Identities=14% Similarity=0.127 Sum_probs=42.6
Q ss_pred ccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCcccc-----chhhhhhhcCCCCeEEEec
Q 044144 196 EKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYI-----FSASMIGSLKHLQHLEVRF 266 (356)
Q Consensus 196 ~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l-----~~~~~~~~l~~L~~L~i~~ 266 (356)
.+..+++|+.|++++|+++++.. +. .+..+ +|+.|++.+.+-.... +...++..+|+|+.|+-..
T Consensus 191 ~~~~l~~L~~L~Ls~N~i~~~~~---l~--~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 191 IVQKAPNLKILNLSGNELKSERE---LD--KIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp HHHHSTTCCEEECTTSCCCSGGG---GG--GGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred HHhhCCCCCEEECCCCccCCchh---hh--hcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcC
Confidence 34578999999999998887311 11 12233 8999999986633321 1234567888888876443
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=93.76 E-value=0.013 Score=48.05 Aligned_cols=70 Identities=13% Similarity=0.085 Sum_probs=36.0
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeec-cCcCccccc---hhhhhhhcCCCCeEEEecCc
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVW-HCNKLKYIF---SASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~-~c~~l~~l~---~~~~~~~l~~L~~L~i~~c~ 268 (356)
+...++|+.|++.+|.+.+..... +.. .+...++|++|+++ ..+.+.+.. -...+...++|++|++++|.
T Consensus 89 L~~n~~L~~L~L~~N~i~~~g~~~-l~~-~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 89 LKVNNTLKSLNVESNFISGSGILA-LVE-ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHCSSCCEEECCSSCCCHHHHHH-HHH-GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHhCCCcCEEECcCCcCCHHHHHH-HHH-HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 344567777777777655411000 000 13344667777773 234454431 11333455777777777764
No 159
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.96 E-value=1.6 Score=39.50 Aligned_cols=93 Identities=15% Similarity=0.211 Sum_probs=60.3
Q ss_pred cccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEecCcccceeecc
Q 044144 197 KVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCEDLQEIISE 276 (356)
Q Consensus 197 ~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~~l~~i~~~ 276 (356)
...+.+|+.+.+.. +++. .+...|..+.+|+.+.+.+ ..++.+ +...+.+|.+|+.+++.+ .++.| ..
T Consensus 259 F~~~~~l~~i~l~~-~i~~------i~~~aF~~c~~L~~i~l~~-~~i~~I-~~~aF~~c~~L~~i~lp~--~l~~I-~~ 326 (379)
T 4h09_A 259 LQNCTALKTLNFYA-KVKT------VPYLLCSGCSNLTKVVMDN-SAIETL-EPRVFMDCVKLSSVTLPT--ALKTI-QV 326 (379)
T ss_dssp TTTCTTCCEEEECC-CCSE------ECTTTTTTCTTCCEEEECC-TTCCEE-CTTTTTTCTTCCEEECCT--TCCEE-CT
T ss_pred cceeehhccccccc-ccee------ccccccccccccccccccc-ccccee-hhhhhcCCCCCCEEEcCc--cccEE-HH
Confidence 34567888888865 3444 2333477889999999865 357777 667888899999998864 35555 22
Q ss_pred CCCCcCcccccCCccCeeeccccccceeecCCC
Q 044144 277 NRADEVIPYFVFPQLTTLILQYLPKLRCLYPGM 309 (356)
Q Consensus 277 ~~~~~~~~~~~l~~L~~L~l~~c~~L~~~~~~~ 309 (356)
....+ +++|+.+.+-. +++.+....
T Consensus 327 ~aF~~------C~~L~~i~ip~--~v~~I~~~a 351 (379)
T 4h09_A 327 YAFKN------CKALSTISYPK--SITLIESGA 351 (379)
T ss_dssp TTTTT------CTTCCCCCCCT--TCCEECTTT
T ss_pred HHhhC------CCCCCEEEECC--ccCEEchhH
Confidence 33333 56777776632 466665443
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=92.48 E-value=0.013 Score=48.17 Aligned_cols=123 Identities=14% Similarity=0.021 Sum_probs=67.1
Q ss_pred cccccCCCcCeEEecce-eeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccc---hhhhhhhcCCCCeEEEecCccc
Q 044144 195 NEKVALPNLEALEISAI-NVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIF---SASMIGSLKHLQHLEVRFCEDL 270 (356)
Q Consensus 195 ~~~~~l~~L~~L~l~~~-~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~---~~~~~~~l~~L~~L~i~~c~~l 270 (356)
..+...++|+.|++.+| .+.+..... +.. .+...++|++|++++| .+.+.. -...+...++|++|++++|. +
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~-l~~-~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i 105 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKA-CAE-ALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF-I 105 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHH-HHH-HHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC-C
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHH-HHH-HHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc-C
Confidence 34456788999999888 776521111 111 1334578899999876 455431 12334456789999998875 3
Q ss_pred ceeeccCCCCc-CcccccCCccCeeec--cccccceeecCCCCc---CCCCcccEEeeccCc
Q 044144 271 QEIISENRADE-VIPYFVFPQLTTLIL--QYLPKLRCLYPGMHT---SEWPALEIFSVFRCD 326 (356)
Q Consensus 271 ~~i~~~~~~~~-~~~~~~l~~L~~L~l--~~c~~L~~~~~~~~~---~~~~~L~~L~i~~C~ 326 (356)
.. +++.. .......+.|++|++ .++ .+..-....+. ...++|++|++.+|.
T Consensus 106 ~~----~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 106 SG----SGILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CH----HHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred CH----HHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 22 11100 001112567888888 444 44442211110 234678888887764
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=85.18 E-value=1 Score=34.31 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=19.7
Q ss_pred CccEEeeccCcCccccchhhhhhhcCCCCeEEEecCc
Q 044144 232 NLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRFCE 268 (356)
Q Consensus 232 ~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~c~ 268 (356)
+|+.|++++ ++++.+ +...+..+++|+.|++.+++
T Consensus 32 ~l~~L~Ls~-N~l~~l-~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTG-NNLTAL-PPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTT-SCCSSC-CTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCC-CcCCcc-ChhhhhhccccCEEEecCCC
Confidence 456666654 455555 55555555666666665543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=79.87 E-value=1 Score=34.25 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=30.3
Q ss_pred CCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCc
Q 044144 201 PNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCN 242 (356)
Q Consensus 201 ~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~ 242 (356)
++|+.|+|++|+++. +|...|..+++|+.|++.+.+
T Consensus 31 ~~l~~L~Ls~N~l~~------l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 31 VDTTELVLTGNNLTA------LPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TTCSEEECTTSCCSS------CCTTTGGGCTTCCEEECCSSC
T ss_pred cCCCEEECCCCcCCc------cChhhhhhccccCEEEecCCC
Confidence 579999999999988 565568889999999998744
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=32.05 E-value=8.4 Score=31.56 Aligned_cols=69 Identities=9% Similarity=-0.018 Sum_probs=32.2
Q ss_pred ccccCCCcCeEEecceeeeEEcccCCCCCCCCCCCcCccEEeeccCcCccccch---hhhhhhcCCCCeEEEecC
Q 044144 196 EKVALPNLEALEISAINVDKIWHYNQIPAAVFPRFQNLTRLIVWHCNKLKYIFS---ASMIGSLKHLQHLEVRFC 267 (356)
Q Consensus 196 ~~~~l~~L~~L~l~~~~l~~~~~~~~~p~~~~~~l~~L~~L~i~~c~~l~~l~~---~~~~~~l~~L~~L~i~~c 267 (356)
.+..-++|+.|+|.+|.+.+..... +.. .+..=+.|++|++++ +.+.+..- ...+..-+.|++|+++++
T Consensus 65 aL~~N~~L~~L~L~~n~igd~ga~a-lA~-aL~~N~tL~~L~L~~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 65 AACNSKHIEKFSLANTAISDSEARG-LIE-LIETSPSLRVLNVES-NFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHTTCSCCCEEECTTSCCBHHHHTT-HHH-HHHHCSSCCEEECCS-SBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHhhCCCcCEEEccCCCCChHHHHH-HHH-HHhcCCccCeEecCC-CcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 3444566777777776665421111 110 011224567777754 34444311 122223345667766654
No 164
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.71 E-value=44 Score=23.72 Aligned_cols=38 Identities=13% Similarity=0.169 Sum_probs=25.1
Q ss_pred CCCCCcCccEEeeccCcCccccchhhhhhhcCCCCeEEEec
Q 044144 226 VFPRFQNLTRLIVWHCNKLKYIFSASMIGSLKHLQHLEVRF 266 (356)
Q Consensus 226 ~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~l~~L~~L~i~~ 266 (356)
.|..+.+|+++.|-. .++.+ ....+.+|.+|+.+.+..
T Consensus 15 aF~~c~~L~~i~iP~--~v~~I-g~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQP--NIGLL-YDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECT--TSSCC-CTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCC--chheE-cHHHHhccCCccEEEEcC
Confidence 466677777777743 45565 556666777777777765
Done!