BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>044145
MSFHSSSHILFLFWCKVDEIELNFPSSDMINFQVGLINKRLDAGRFKTVHSCHLILPFLI
NGLGTKWFK

High Scoring Gene Products

Symbol, full name Information P value
AT5G19860 protein from Arabidopsis thaliana 1.4e-09

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  044145
        (69 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2147610 - symbol:AT5G19860 "AT5G19860" species...   139  1.4e-09   1


>TAIR|locus:2147610 [details] [associations]
            symbol:AT5G19860 "AT5G19860" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
            EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0005773
            Gene3D:2.30.240.10 InterPro:IPR007493 Pfam:PF04398 SUPFAM:SSF141562
            HOGENOM:HOG000238027 EMBL:BT010202 EMBL:AK226407 IPI:IPI00537253
            RefSeq:NP_568383.1 UniGene:At.25350 UniGene:At.67301 STRING:Q7XA63
            PaxDb:Q7XA63 PRIDE:Q7XA63 EnsemblPlants:AT5G19860.1 GeneID:832107
            KEGG:ath:AT5G19860 TAIR:At5g19860 eggNOG:NOG321077
            InParanoid:Q7XA63 OMA:DIGWITR PhylomeDB:Q7XA63
            ProtClustDB:CLSN2689804 Genevestigator:Q7XA63 Uniprot:Q7XA63
        Length = 181

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 24/40 (60%), Positives = 31/40 (77%)

Query:    14 WCKVDEIELNFPSSDMINFQVGLINKRLDAGRFKTVHSCH 53
             W  VDEI+++ P SD I F+VG INK+LD  +FKT+HSCH
Sbjct:   110 WLDVDEIKVDLPPSDSIYFKVGFINKKLDIDQFKTIHSCH 149


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.144   0.484    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       69        57   0.00091  102 3  11 22  0.44    27
                                                     29  0.44    27


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  506 (54 KB)
  Total size of DFA:  90 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.82u 0.16s 6.98t   Elapsed:  00:00:00
  Total cpu time:  6.82u 0.16s 6.98t   Elapsed:  00:00:00
  Start:  Sat May 11 10:08:00 2013   End:  Sat May 11 10:08:00 2013

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