Query 044145
Match_columns 69
No_of_seqs 105 out of 160
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 20:41:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ydu_A AT5G01610; DUF538, stru 99.5 4.2E-16 1.4E-20 107.6 -0.9 49 2-55 119-167 (170)
2 1nwb_A Hypothetical protein AQ 58.4 10 0.00035 23.4 3.3 35 27-61 82-116 (124)
3 1x0g_A ISCA; [2Fe-2S], biosynt 50.8 11 0.00037 22.7 2.4 35 27-61 76-110 (112)
4 1r94_A Protein YFHF; tetrameri 47.4 14 0.00047 22.6 2.5 35 27-61 74-108 (118)
5 2d2a_A SUFA protein; iron-sulf 42.3 21 0.00073 22.9 3.0 33 27-59 112-144 (145)
6 2cc6_A VNG1446H, dodecin; flav 33.5 71 0.0024 18.4 4.1 26 13-38 35-61 (68)
7 2apn_A Protein HI1723; HI1723 31.7 14 0.00047 22.2 0.7 33 27-59 81-113 (114)
8 3rty_A Period circadian protei 31.4 1.2E+02 0.0042 21.4 5.8 41 12-52 233-276 (339)
9 3onr_A Protein transport prote 29.6 87 0.003 18.3 4.1 26 13-38 37-63 (72)
10 2yiz_A Dodecin; flavoprotein, 26.9 66 0.0023 18.6 3.1 24 13-36 37-60 (69)
11 2ux9_A Dodecin; flavoprotein; 26.4 68 0.0023 18.6 3.1 24 13-36 37-60 (69)
12 2vxa_A Dodecin; flavoprotein, 26.3 68 0.0023 18.7 3.1 26 13-38 38-64 (72)
13 4fno_A PTH, peptidyl-tRNA hydr 30.6 16 0.00053 25.0 0.0 34 1-37 69-104 (194)
14 3j20_Y 30S ribosomal protein S 22.3 27 0.00093 18.8 0.7 17 45-62 18-34 (50)
No 1
>1ydu_A AT5G01610; DUF538, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG unknown function; NMR {Arabidopsis thaliana} SCOP: b.162.1.1
Probab=99.53 E-value=4.2e-16 Score=107.64 Aligned_cols=49 Identities=14% Similarity=0.327 Sum_probs=46.2
Q ss_pred ceeeeEEEEEEEEeEeeEEEEcCCCCCcEEEEEeeeeeeeeccccccCCCcccC
Q 044145 2 SFHSSSHILFLFWCKVDEIELNFPSSDMINFQVGLINKRLDAGRFKTVHSCHLI 55 (69)
Q Consensus 2 ~l~GVsvK~lflWl~I~eI~vd~p~~~~I~F~vG~isk~FP~s~Fe~~P~C~~~ 55 (69)
+|+||++|+| +|++|+||+|+ +|+|+|++| ++++||+++|+.+|.|...
T Consensus 119 ~L~GVk~K~L-lWv~V~eI~v~---~~kI~F~vG-i~ksfp~saFe~~~~c~~~ 167 (170)
T 1ydu_A 119 DVEGIKTKVM-IWVKVTSISTD---ASKVYFTAG-MKKSRSRDAYGVQRNGLRV 167 (170)
T ss_dssp EEESCEEESS-SEESCCCBEEC---SSSEECTTS-SSSCCCHHHHSSCCCCCCT
T ss_pred cccCEEEEEE-EEeeEEEEEEe---CCEEEEEEc-CcccccHHHhcCCcCCccc
Confidence 6899999999 99999999997 999999999 5899999999999999864
No 2
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1
Probab=58.36 E-value=10 Score=23.44 Aligned_cols=35 Identities=11% Similarity=0.178 Sum_probs=15.0
Q ss_pred CCcEEEEEeeeeeeeeccccccCCCcccCccceee
Q 044145 27 SDMINFQVGLINKRLDAGRFKTVHSCHLILPFLIN 61 (69)
Q Consensus 27 ~~~I~F~vG~isk~FP~s~Fe~~P~C~~~~~~~~~ 61 (69)
+-.|.|.-......|-+.|=...-.|+||.++-++
T Consensus 82 G~~IDy~~~~~g~gF~~~NPna~~~CgCG~SF~~~ 116 (124)
T 1nwb_A 82 GAELDYVVDFMGGGFTIRNPNATGSCGCGSSFSCG 116 (124)
T ss_dssp TCEEEEEEETTEEEEEEECC---------------
T ss_pred CCEEEEEcCCCcceEEEeCCCCCcCCCCCCCcCCC
Confidence 66788888777778876655555689999988653
No 3
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}
Probab=50.82 E-value=11 Score=22.72 Aligned_cols=35 Identities=9% Similarity=0.194 Sum_probs=25.0
Q ss_pred CCcEEEEEeeeeeeeeccccccCCCcccCccceee
Q 044145 27 SDMINFQVGLINKRLDAGRFKTVHSCHLILPFLIN 61 (69)
Q Consensus 27 ~~~I~F~vG~isk~FP~s~Fe~~P~C~~~~~~~~~ 61 (69)
+-.|.|.-......|-+.|=...-.|+||.++-++
T Consensus 76 g~~IDy~~~~~g~gF~~~nPna~~~CgCG~SF~~~ 110 (112)
T 1x0g_A 76 GLRVDYIEDLMGGAFRFHNPNASQTCGCGMAFRVS 110 (112)
T ss_dssp TCEEEEEEETTEEEEEEECTTCSEECSSSSEEECC
T ss_pred CCEEEEEecCCCCEEEEeCCCCCcCCCCCCccccC
Confidence 56777777777778876554445579999998654
No 4
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Probab=47.36 E-value=14 Score=22.61 Aligned_cols=35 Identities=11% Similarity=0.137 Sum_probs=16.4
Q ss_pred CCcEEEEEeeeeeeeeccccccCCCcccCccceee
Q 044145 27 SDMINFQVGLINKRLDAGRFKTVHSCHLILPFLIN 61 (69)
Q Consensus 27 ~~~I~F~vG~isk~FP~s~Fe~~P~C~~~~~~~~~ 61 (69)
+-.|.|.-......|-+.|=...-.|+||.++-++
T Consensus 74 g~~IDy~~~~~g~gF~~~NPna~~~CgCG~SF~~~ 108 (118)
T 1r94_A 74 GTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKLA 108 (118)
T ss_dssp TCEEEEEEETTEEEEEEECTTCCC-----------
T ss_pred CCEEEEEcCCCcCceEEeCCCCCCCCCCCCCcCCC
Confidence 56677777767777876665556689999998754
No 5
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}
Probab=42.32 E-value=21 Score=22.89 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=23.9
Q ss_pred CCcEEEEEeeeeeeeeccccccCCCcccCccce
Q 044145 27 SDMINFQVGLINKRLDAGRFKTVHSCHLILPFL 59 (69)
Q Consensus 27 ~~~I~F~vG~isk~FP~s~Fe~~P~C~~~~~~~ 59 (69)
+-.|.|.-......|-+.|=...-.|+||.++-
T Consensus 112 G~~IDy~e~l~g~gF~f~NPna~~~CGCG~SF~ 144 (145)
T 2d2a_A 112 GTEVDFVREGLNQIFKFHNPKAQNECGCGESFG 144 (145)
T ss_dssp TCEEEEEEETTEEEEEEECTTTCSCCCCBCEEE
T ss_pred CCEEEEEcCCCcceEEEeCCCCCcccCCCCCcc
Confidence 567777777777788766545556799998874
No 6
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=33.48 E-value=71 Score=18.43 Aligned_cols=26 Identities=12% Similarity=0.374 Sum_probs=21.4
Q ss_pred EEeEeeEEEEcCCCCCcEEEEEee-ee
Q 044145 13 FWCKVDEIELNFPSSDMINFQVGL-IN 38 (69)
Q Consensus 13 lWl~I~eI~vd~p~~~~I~F~vG~-is 38 (69)
-|+-|+|++.+.-++.-.+|+|.+ ++
T Consensus 35 ~~~eV~e~~~~v~dgkv~~yqv~lKV~ 61 (68)
T 2cc6_A 35 VWAEVVDQGVEIGAVEERTYQTEVQVA 61 (68)
T ss_dssp EEEEEEEEEEECTTSSSCEEEEEEEEE
T ss_pred eEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence 599999999988778888888876 44
No 7
>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}
Probab=31.70 E-value=14 Score=22.25 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=21.8
Q ss_pred CCcEEEEEeeeeeeeeccccccCCCcccCccce
Q 044145 27 SDMINFQVGLINKRLDAGRFKTVHSCHLILPFL 59 (69)
Q Consensus 27 ~~~I~F~vG~isk~FP~s~Fe~~P~C~~~~~~~ 59 (69)
+-.|.|.-+.....|-+.|=...-.|+||.++-
T Consensus 81 g~~IDy~~~~~g~~F~~~nPna~~~CgCG~SF~ 113 (114)
T 2apn_A 81 GGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFS 113 (114)
T ss_dssp TCEEEEECSSSCCEEEEECHHHHCCCCCCCCSC
T ss_pred CCEEEEEcCCCcceEEEeCCCCCcCCCCCCCcc
Confidence 455666666666677655544456899998863
No 8
>3rty_A Period circadian protein; PAS domain, signalling, timeless, circadian clock protein; 2.85A {Drosophila melanogaster} PDB: 1wa9_A 3gec_A
Probab=31.44 E-value=1.2e+02 Score=21.37 Aligned_cols=41 Identities=17% Similarity=0.279 Sum_probs=33.6
Q ss_pred EEEeEeeEEEEcCCCCCcEEEEEee---eeeeeeccccccCCCc
Q 044145 12 LFWCKVDEIELNFPSSDMINFQVGL---INKRLDAGRFKTVHSC 52 (69)
Q Consensus 12 flWl~I~eI~vd~p~~~~I~F~vG~---isk~FP~s~Fe~~P~C 52 (69)
++|+..+.-.+.+|.++.+.|=+|. ++..---+.|+.+|.+
T Consensus 233 ~vWlet~~~~~~np~s~~~~~II~~h~vi~~p~~~dvf~~~~~~ 276 (339)
T 3rty_A 233 YVLLETEWTSFVNPWSRKLEFVVGHHRVFQGPKQCNVFEAAPTC 276 (339)
T ss_dssp EEEEEEEEEEEECTTTCSEEEEEEEEEEEECCSSSCSSSSCCSC
T ss_pred EEEEEEEEEEEECCCCCCeeEEEEEEEECCCCCCCCcccCCCcc
Confidence 5798877766666889999999996 7777778899998866
No 9
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=29.58 E-value=87 Score=18.25 Aligned_cols=26 Identities=19% Similarity=0.340 Sum_probs=20.7
Q ss_pred EEeEeeEEEEcCCCCCcEEEEEee-ee
Q 044145 13 FWCKVDEIELNFPSSDMINFQVGL-IN 38 (69)
Q Consensus 13 lWl~I~eI~vd~p~~~~I~F~vG~-is 38 (69)
-|+-|+|++.+.-++.-.+|+|.+ ++
T Consensus 37 ~~~eV~e~~~~v~dgkv~~yqv~lKV~ 63 (72)
T 3onr_A 37 RVARVIEQDMAVDSAGKITYRIKLEVS 63 (72)
T ss_dssp CEEEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred eEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence 488999998887778888888886 54
No 10
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=26.91 E-value=66 Score=18.61 Aligned_cols=24 Identities=25% Similarity=0.465 Sum_probs=18.9
Q ss_pred EEeEeeEEEEcCCCCCcEEEEEee
Q 044145 13 FWCKVDEIELNFPSSDMINFQVGL 36 (69)
Q Consensus 13 lWl~I~eI~vd~p~~~~I~F~vG~ 36 (69)
-|+-|+|++.+.-++.-.+|+|.+
T Consensus 37 ~~~eV~e~~~~v~dgkv~~yqv~l 60 (69)
T 2yiz_A 37 DWFEVQSIRGHLVDGAVAHFQVTM 60 (69)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEE
T ss_pred eEEEEEEEEEEEeCCcEEEEEEEE
Confidence 589999998776667777888876
No 11
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=26.43 E-value=68 Score=18.55 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=18.8
Q ss_pred EEeEeeEEEEcCCCCCcEEEEEee
Q 044145 13 FWCKVDEIELNFPSSDMINFQVGL 36 (69)
Q Consensus 13 lWl~I~eI~vd~p~~~~I~F~vG~ 36 (69)
-|+-|+|++.+.-++.-.+|+|.+
T Consensus 37 ~~~eV~e~~~~v~dgkv~~yqv~l 60 (69)
T 2ux9_A 37 DWFEVKEIRGTIGEAGVKEYQVVL 60 (69)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEE
T ss_pred eEEEEEEEEEEEeCCcEEEEEEEE
Confidence 589999998776667777888876
No 12
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=26.34 E-value=68 Score=18.71 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=19.7
Q ss_pred EEeEeeEEEEcCCCCCcEEEEEee-ee
Q 044145 13 FWCKVDEIELNFPSSDMINFQVGL-IN 38 (69)
Q Consensus 13 lWl~I~eI~vd~p~~~~I~F~vG~-is 38 (69)
-|+-|+|++.+.-++.-.+|+|.+ ++
T Consensus 38 ~~~eV~e~r~~v~dgki~~yqV~lKV~ 64 (72)
T 2vxa_A 38 RWFEVVDTRGHIEGGRVNHWQVTVKVG 64 (72)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred eEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence 489999998776667777888876 44
No 13
>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A
Probab=30.61 E-value=16 Score=24.95 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=23.5
Q ss_pred CceeeeEEEEEEEEeEe--eEEEEcCCCCCcEEEEEeee
Q 044145 1 MSFHSSSHILFLFWCKV--DEIELNFPSSDMINFQVGLI 37 (69)
Q Consensus 1 ~~l~GVsvK~lflWl~I--~eI~vd~p~~~~I~F~vG~i 37 (69)
|+++|-+|+.+.-|..| .+|.|= -|.+....|.+
T Consensus 69 MNlSG~aV~~~~~fyki~~~~ilVi---hDdldLp~G~i 104 (194)
T 4fno_A 69 MNRSGQSVAALAGFFRIAPDAILVA---HDELDMPPGVA 104 (194)
Confidence 89999999998777655 566664 44555555543
No 14
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=22.29 E-value=27 Score=18.77 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=11.8
Q ss_pred ccccCCCcccCccceeec
Q 044145 45 RFKTVHSCHLILPFLING 62 (69)
Q Consensus 45 ~Fe~~P~C~~~~~~~~~~ 62 (69)
.+...|+||.+. +|.+.
T Consensus 18 ~~k~CP~CG~~~-fm~~~ 34 (50)
T 3j20_Y 18 KNKFCPRCGPGV-FMADH 34 (50)
T ss_dssp SSEECSSSCSSC-EEEEC
T ss_pred ecccCCCCCCce-EEecC
Confidence 578899998864 44443
Done!