BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044147
(177 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 135 bits (341), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 67/146 (45%), Positives = 94/146 (64%), Gaps = 1/146 (0%)
Query: 9 NAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETS 68
+ +K+DVFLSFRG DTR F S + + L R+ I+ F DD+EL+ G+ SP L S IE S
Sbjct: 4 HTATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVS 63
Query: 69 DISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVH 128
++++ SENYA+S+WCLDELV I+D +K+ V+P+FY V+P+ VR Q G E F
Sbjct: 64 RFAVVVVSENYAASSWCLDELVTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKK 123
Query: 129 HERNFPCEVRVQKWRDSLIQASNISG 154
H E +V KWR +L + +SG
Sbjct: 124 HASREDPE-KVLKWRQALTNFAQLSG 148
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 130 bits (326), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 99/157 (63%), Gaps = 5/157 (3%)
Query: 3 SSSTNLNAQ---SKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISP 59
S STN + +++VFLSFRG DTR FT + ++LRR +I F DD+EL +G+EI P
Sbjct: 22 SDSTNPSGSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGP 81
Query: 60 ALLSAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNG-QIVVPVFYKVDPSDVRKQ 118
LL AI+ S I + I S YA S WCL EL I+ ++ + +I++P+FY VDPSDVR Q
Sbjct: 82 NLLRAIDQSKIYVPIISSGYADSKWCLMELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQ 141
Query: 119 MGSFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGF 155
G + +AF H F + +Q W+D+L + ++ G+
Sbjct: 142 TGCYKKAFRKHANKFDGQT-IQNWKDALKKVGDLKGW 177
>pdb|3H16|A Chain A, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|B Chain B, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|C Chain C, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
pdb|3H16|D Chain D, Crystal Structure Of A Bacteria Tir Domain, Pdtir From
Paracoccus Denitrificans
Length = 154
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 3 SSSTNLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALL 62
+++ +L + D+F+S ED + F + LR + + DD L+ G+ + ++
Sbjct: 10 TTNADLTSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSID 68
Query: 63 SAIETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDV 115
+ +S I++ S ++ W EL + + ++P+++KV +V
Sbjct: 69 KGLGSSRFGIVVLSTHFFKKEWPQKELDGLFQLESSGRSRILPIWHKVSKDEV 121
>pdb|3RGW|L Chain L, Crystal Structure At 1.5 A Resolution Of An H2-Reduced,
O2-Tolerant Hydrogenase From Ralstonia Eutropha Unmasks
A Novel Iron-Sulfur Cluster
Length = 603
Score = 30.8 bits (68), Expect = 0.44, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 80 ASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSF 122
A+ L +RI D + N Q VVP + P D + Q+G+F
Sbjct: 527 AAPRGALGHWIRIKDGRIENYQCVVPTTWNGSPRDYKGQIGAF 569
>pdb|3ZYW|A Chain A, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
pdb|3ZYW|B Chain B, Crystal Structure Of The First Glutaredoxin Domain Of
Human Glutaredoxin 3 (Glrx3)
Length = 111
Score = 30.0 bits (66), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 16 VFLSFRGEDTRTGFTSHVVEALRRKQIQF----FIDDEELQRG 54
+F+ ++ R GF+ +VE L + IQF DEE+++G
Sbjct: 20 LFMKGTPQEPRCGFSKQMVEILHKHNIQFSSFDIFSDEEVRQG 62
>pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|B Chain B, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|C Chain C, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ3|D Chain D, Molecular Mechanism For The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 554
Score = 29.6 bits (65), Expect = 1.0, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 65 IETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQM 119
IET DI + F N T L++ + I+ ++RN ++ FY++ D+ M
Sbjct: 39 IETQDIQALRFHRNLKKMTSPLEKYIYIMGIQERNEKL----FYRILQDDIESLM 89
>pdb|2WUL|A Chain A, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|B Chain B, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|C Chain C, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
pdb|2WUL|D Chain D, Crystal Structure Of The Human Glutaredoxin 5 With Bound
Glutathione In An Fes Cluster
Length = 118
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 8/59 (13%)
Query: 4 SSTNLNAQSKFD---VFLSFRGEDTRTGFTSHVVEALRRKQIQFF-----IDDEELQRG 54
S+ L+A K D VFL E + GF++ VV+ LR ++ + +DD EL++G
Sbjct: 9 SAEQLDALVKKDKVVVFLKGTPEQPQCGFSNAVVQILRLHGVRDYAAYNVLDDPELRQG 67
>pdb|1FYX|A Chain A, Crystal Structure Of P681h Mutant Of Tir Domain Of Human
Tlr2
Length = 149
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 14 FDVFLSFRGEDTRTGFTSHVVEALRRKQIQFF-------IDDEELQRGEEISPALLSAIE 66
+D F+S+ D ++ VE L ++++ F + + G+ I ++ +IE
Sbjct: 6 YDAFVSYSERD------AYWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIE 59
Query: 67 TSDISIIIFSENYASSTWCLDEL 89
S ++ + SEN+ S W EL
Sbjct: 60 KSHKTVFVLSENFVKSEWXKYEL 82
>pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
pdb|1QR6|B Chain B, Human Mitochondrial Nad(P)-Dependent Malic Enzyme
Length = 584
Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 65 IETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDV 115
IET DI + F N T L++ + I ++RN ++ FY++ D+
Sbjct: 58 IETQDIQALRFHRNLKKXTSPLEKYIYIXGIQERNEKL----FYRILQDDI 104
>pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|B Chain B, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|C Chain C, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFK|D Chain D, Structure Of Human Malic Enzyme In Complex With
Ketomalonate
pdb|1EFL|A Chain A, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|B Chain B, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|C Chain C, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1EFL|D Chain D, Human Malic Enzyme In A Quaternary Complex With Nad, Mg,
And Tartronate
pdb|1PJL|A Chain A, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|B Chain B, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|C Chain C, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|D Chain D, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|E Chain E, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|F Chain F, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|G Chain G, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
pdb|1PJL|H Chain H, Crystal Structure Of Human M-Nad-Me In Ternary Complex
With Nad And Lu3+
Length = 584
Score = 27.3 bits (59), Expect = 4.8, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 65 IETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDV 115
IET DI + F N T L++ + I ++RN ++ FY++ D+
Sbjct: 58 IETQDIQALRFHRNLKKXTSPLEKYIYIXGIQERNEKL----FYRILQDDI 104
>pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|B Chain B, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|C Chain C, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
pdb|1GZ4|D Chain D, Molecular Mechanism Of The Regulation Of Human
Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And
Fumarate
Length = 551
Score = 27.3 bits (59), Expect = 4.9, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 65 IETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDV 115
IET DI + F N T L++ + I ++RN ++ FY++ D+
Sbjct: 36 IETQDIQALRFHRNLKKXTSPLEKYIYIXGIQERNEKL----FYRILQDDI 82
>pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|B Chain B, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|C Chain C, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1DO8|D Chain D, Crystal Structure Of A Closed Form Of Human Mitochondrial
Nad(P)+-Dependent Malic Enzyme
pdb|1PJ4|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ4|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Atp, Mn++, And Allosteric Activator Fumarate.
pdb|1PJ2|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ2|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Malate, Cofactor Nadh, Mn++, And Allosteric Activator
Fumarate
pdb|1PJ3|A Chain A, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|B Chain B, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|C Chain C, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate.
pdb|1PJ3|D Chain D, Crystal Structure Of Human Mitochondrial Nad(P)+-Dependent
Malic Enzyme In A Pentary Complex With Natural Substrate
Pyruvate, Cofactor Nad+, Mn++, And Allosteric Activator
Fumarate
Length = 564
Score = 27.3 bits (59), Expect = 4.9, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 65 IETSDISIIIFSENYASSTWCLDELVRILDCKKRNGQIVVPVFYKVDPSDV 115
IET DI + F N T L++ + I ++RN ++ FY++ D+
Sbjct: 38 IETQDIQALRFHRNLKKXTSPLEKYIYIXGIQERNEKL----FYRILQDDI 84
>pdb|1O77|A Chain A, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|B Chain B, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|C Chain C, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|D Chain D, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
pdb|1O77|E Chain E, Crystal Structure Of The C713s Mutant Of The Tir Domain
Of Human Tlr2
Length = 146
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 14 FDVFLSFRGEDTRTGFTSHVVEALRRKQIQFF-------IDDEELQRGEEISPALLSAIE 66
+D F+S+ D ++ VE L ++++ F + + G+ I ++ +IE
Sbjct: 3 YDAFVSYSERD------AYWVENLMVQELENFNPPFKLCLHKRDFIPGKWIIDNIIDSIE 56
Query: 67 TSDISIIIFSENYASSTWCLDEL 89
S ++ + SEN+ S W EL
Sbjct: 57 KSHKTVFVLSENFVKSEWSKYEL 79
>pdb|1FYW|A Chain A, Crystal Structure Of The Tir Domain Of Human Tlr2
Length = 149
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 13/83 (15%)
Query: 14 FDVFLSFRGEDTRTGFTSHVVEALRRKQIQFF-------IDDEELQRGEEISPALLSAIE 66
+D F+S+ D ++ VE L ++++ F + + G+ I ++ +IE
Sbjct: 6 YDAFVSYSERD------AYWVENLXVQELENFNPPFKLXLHKRDFIPGKWIIDNIIDSIE 59
Query: 67 TSDISIIIFSENYASSTWCLDEL 89
S ++ + SEN+ S W EL
Sbjct: 60 KSHKTVFVLSENFVKSEWXKYEL 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,996,178
Number of Sequences: 62578
Number of extensions: 187892
Number of successful extensions: 438
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 17
length of query: 177
length of database: 14,973,337
effective HSP length: 92
effective length of query: 85
effective length of database: 9,216,161
effective search space: 783373685
effective search space used: 783373685
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)