Query 044147
Match_columns 177
No_of_seqs 189 out of 1482
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 20:43:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044147.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044147hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ozi_A L6TR; plant TIR domain, 100.0 1.7E-56 5.7E-61 355.5 12.3 168 7-175 29-199 (204)
2 3jrn_A AT1G72930 protein; TIR 100.0 1.8E-56 6.2E-61 349.1 12.2 165 10-175 5-169 (176)
3 3h16_A TIR protein; bacteria T 100.0 1.2E-37 4.1E-42 237.8 5.4 136 9-149 16-151 (154)
4 3ub2_A TOLL/interleukin-1 rece 100.0 2.4E-31 8.1E-36 201.7 3.0 138 7-146 4-145 (146)
5 2js7_A Myeloid differentiation 99.9 9E-27 3.1E-31 178.9 5.1 103 9-113 12-118 (160)
6 1fyx_A TOLL-like receptor 2; b 99.9 4.6E-27 1.6E-31 178.4 2.3 105 10-116 2-111 (149)
7 2j67_A TOLL like receptor 10; 99.9 2.3E-26 7.8E-31 179.6 4.7 102 8-111 30-135 (178)
8 1t3g_A X-linked interleukin-1 99.9 5.3E-26 1.8E-30 174.4 5.5 102 12-113 1-115 (159)
9 3j0a_A TOLL-like receptor 5; m 99.8 1.9E-19 6.5E-24 167.1 6.2 103 9-113 666-775 (844)
10 1eiw_A Hypothetical protein MT 98.2 2.3E-06 7.8E-11 61.4 6.3 73 12-108 3-75 (111)
11 3hyn_A Putative signal transdu 96.9 0.0033 1.1E-07 48.6 7.4 96 21-121 27-131 (189)
12 2f62_A Nucleoside 2-deoxyribos 88.6 1.3 4.5E-05 33.0 6.7 86 12-97 9-99 (161)
13 4fyk_A Deoxyribonucleoside 5'- 80.8 5.2 0.00018 29.6 6.7 79 15-97 4-95 (152)
14 3ehd_A Uncharacterized conserv 80.1 4.2 0.00014 30.3 6.0 76 27-107 19-104 (162)
15 2yvq_A Carbamoyl-phosphate syn 78.5 2.6 8.9E-05 30.5 4.4 62 16-79 27-106 (143)
16 2khz_A C-MYC-responsive protei 71.2 17 0.00057 26.7 7.3 82 12-97 10-104 (165)
17 1s2d_A Purine trans deoxyribos 66.1 9.4 0.00032 28.4 5.0 85 15-106 9-115 (167)
18 2jug_A TUBC protein; docking d 64.1 5.6 0.00019 25.6 3.0 40 30-69 7-49 (78)
19 1v95_A Nuclear receptor coacti 57.2 32 0.0011 24.6 6.2 58 13-74 8-67 (130)
20 1wu7_A Histidyl-tRNA synthetas 50.0 21 0.0007 30.1 4.9 59 13-77 332-391 (434)
21 1f8y_A Nucleoside 2-deoxyribos 48.1 13 0.00045 27.3 3.0 85 15-106 5-112 (157)
22 2i4l_A Proline-tRNA ligase; al 42.0 14 0.00049 31.6 2.7 47 13-59 365-413 (458)
23 4dkx_A RAS-related protein RAB 41.9 1.1E+02 0.0037 23.0 7.8 82 1-83 1-101 (216)
24 1sc3_B Interleukin-1 beta conv 40.5 8 0.00028 25.6 0.7 25 17-41 21-45 (88)
25 2ql9_B Caspase-7; cysteine pro 36.5 9.3 0.00032 25.7 0.5 24 18-41 24-47 (97)
26 3czq_A Putative polyphosphate 36.5 62 0.0021 26.4 5.6 101 15-116 86-205 (304)
27 1qtn_B Caspase-8; apoptosis, d 34.9 8.9 0.00031 25.7 0.2 28 13-40 12-48 (95)
28 3hjn_A DTMP kinase, thymidylat 34.1 32 0.0011 25.7 3.3 32 16-47 1-34 (197)
29 1htt_A Histidyl-tRNA synthetas 34.0 26 0.00088 29.3 3.0 60 12-77 326-388 (423)
30 2dko_B Caspase-3; low barrier 33.3 11 0.00038 25.6 0.5 29 13-41 16-53 (103)
31 3lc0_A Histidyl-tRNA synthetas 32.9 67 0.0023 27.5 5.5 61 12-77 360-420 (456)
32 3aon_B V-type sodium ATPase su 32.6 50 0.0017 22.9 3.9 50 35-91 15-64 (115)
33 1pyo_B Caspase-2; apoptosis, c 32.4 12 0.00041 25.6 0.5 24 18-41 28-51 (105)
34 3net_A Histidyl-tRNA synthetas 31.7 42 0.0014 28.7 4.0 62 12-78 370-431 (465)
35 1byr_A Protein (endonuclease); 30.5 39 0.0013 23.5 3.1 36 29-65 15-50 (155)
36 1evl_A Threonyl-tRNA synthetas 29.4 31 0.001 28.7 2.7 59 13-77 298-357 (401)
37 3czp_A Putative polyphosphate 29.0 1.6E+02 0.0055 25.5 7.3 104 13-117 41-163 (500)
38 1bax_A M-PMV MA, M-PMV matrix 28.7 29 0.00099 23.5 1.9 18 27-44 9-26 (94)
39 4g85_A Histidine-tRNA ligase, 27.9 72 0.0025 27.5 4.9 61 12-77 418-479 (517)
40 2xzd_B Caspase-3; hydrolase-pr 27.9 17 0.00058 25.5 0.7 25 17-41 28-52 (118)
41 4g84_A Histidine--tRNA ligase, 27.2 66 0.0023 27.0 4.4 61 12-77 365-426 (464)
42 1egw_A MADS box transcription 26.9 19 0.00067 23.3 0.8 32 64-95 36-67 (77)
43 1nj1_A PROR, proline-tRNA synt 26.5 30 0.001 30.1 2.2 63 12-78 313-379 (501)
44 3hly_A Flavodoxin-like domain; 25.9 1.7E+02 0.006 20.5 7.4 50 27-82 15-65 (161)
45 2fz5_A Flavodoxin; alpha/beta 25.1 1.5E+02 0.0052 19.6 6.4 47 27-83 14-61 (137)
46 3ikl_A DNA polymerase subunit 24.9 49 0.0017 28.6 3.2 52 24-80 361-416 (459)
47 4a6h_A Phosphatidylinositol 4, 24.9 41 0.0014 23.2 2.3 19 135-153 102-120 (120)
48 3rjm_B Caspase-2; caspase-2, c 23.9 20 0.00068 25.1 0.4 29 13-41 15-52 (117)
49 2d00_A V-type ATP synthase sub 23.5 93 0.0032 21.1 3.9 45 33-81 14-58 (109)
50 4e51_A Histidine--tRNA ligase; 23.5 68 0.0023 27.4 3.9 64 13-77 354-417 (467)
51 3ial_A Prolyl-tRNA synthetase; 23.2 35 0.0012 30.0 1.9 36 27-62 322-359 (518)
52 1qe0_A Histidyl-tRNA synthetas 22.7 31 0.001 28.7 1.5 60 12-77 328-388 (420)
53 2i4r_A V-type ATP synthase sub 22.5 83 0.0028 21.2 3.4 45 34-81 21-65 (102)
54 3ro3_B Minsc, peptide of prote 22.3 63 0.0022 15.7 1.9 15 136-150 7-21 (22)
55 2yry_A Pleckstrin homology dom 21.6 57 0.0019 21.5 2.4 18 135-152 104-121 (122)
56 4a7p_A UDP-glucose dehydrogena 21.3 98 0.0033 26.4 4.4 63 22-84 336-406 (446)
57 1v5p_A Pleckstrin homology dom 21.0 59 0.002 22.4 2.5 19 135-153 104-122 (126)
58 2fcj_A Small toprim domain pro 20.9 54 0.0019 23.0 2.2 58 18-80 30-87 (119)
59 3ftb_A Histidinol-phosphate am 20.2 1.7E+02 0.0058 22.7 5.4 57 35-94 113-171 (361)
60 1hc7_A Prolyl-tRNA synthetase; 20.1 47 0.0016 28.6 2.1 46 13-58 287-337 (477)
No 1
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=100.00 E-value=1.7e-56 Score=355.47 Aligned_cols=168 Identities=39% Similarity=0.692 Sum_probs=149.8
Q ss_pred CCCCCCeeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhhH
Q 044147 7 NLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCL 86 (177)
Q Consensus 7 s~~~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~ 86 (177)
+++|+++|||||||||+|+|..|++||+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||++|++|+||+
T Consensus 29 ~~~~~~~yDVFISfrg~D~r~~Fv~~L~~aL~~~GI~~f~D~~el~~G~~I~~~l~~aIe~Sri~IvV~S~nYa~S~WCl 108 (204)
T 3ozi_A 29 GSFPSVEYEVFLSFRGPDTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCL 108 (204)
T ss_dssp -----CCCCEEEEECHHHHTTTHHHHHHHHHHHTTCCEEEEETTTCCGGGTTTTHHHHHHHCSEEEEEECTTGGGCHHHH
T ss_pred CCCCCcCCeEEEeccccCCCHHHHHHHHHHHHHCCCcEEEeCCccCCCCchHHHHHHHHHhCcEeeEEEEcccccCcHHH
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcc-CCceEEeEEeecCchhhhcccCcHHHHHhhhhhcCCChhHHHHHHHHHHHhhcccceeecCCCccc-
Q 044147 87 DELVRILDCKKR-NGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLW- 164 (177)
Q Consensus 87 ~El~~i~~~~~~-~~~~ViPVfy~v~psdv~~q~g~f~~~f~~~~~~~~~~e~v~~W~~AL~~v~~~~G~~~~~~~~~~- 164 (177)
+||++|++|+++ ++++||||||+|+|++||+|+|.||++|.+|++++ +++++++||.||++||+++||++.+..+..
T Consensus 109 ~EL~~I~e~~~~~~~~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~-~~~~v~~Wr~AL~~va~lsG~~~~~~~~e~~ 187 (204)
T 3ozi_A 109 MELAEIVRRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF-DGQTIQNWKDALKKVGDLKGWHIGKNDKQGA 187 (204)
T ss_dssp HHHHHHHHHHHHCTTSEECCEEESSCHHHHHHTCTTHHHHHHHHTTTS-CHHHHHHHHHHHHHHHTSCBEEECTTSCHHH
T ss_pred HHHHHHHHHHHhcCCeeeEEEEeecCHHHHHhccccHHHHHHHHHHhh-CHHHHHHHHHHHHHHhccCceecCCCCCHHH
Confidence 999999999864 68999999999999999999999999999999988 488999999999999999999999865332
Q ss_pred -chHHHHHHHhh
Q 044147 165 -DHEDVYDVLTK 175 (177)
Q Consensus 165 -~~~~~~~~~~~ 175 (177)
..++|.+|..|
T Consensus 188 ~i~~Iv~di~~k 199 (204)
T 3ozi_A 188 IADKVSADIWSH 199 (204)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 23455555443
No 2
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.8e-56 Score=349.08 Aligned_cols=165 Identities=41% Similarity=0.685 Sum_probs=137.5
Q ss_pred CCCeeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhhHHHH
Q 044147 10 AQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDEL 89 (177)
Q Consensus 10 ~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~~El 89 (177)
++++|||||||||+|+|++|++||+.+|+++||++|+|++++.+|+.|.++|.+||++|+++|+|||+||++|+||++||
T Consensus 5 ~~~~yDVFiSfrg~D~r~~Fv~~L~~~L~~~gi~~f~D~~~l~~G~~i~~~l~~aIe~Sri~IvV~S~ny~~S~WCl~EL 84 (176)
T 3jrn_A 5 TATKYDVFLSFRGHDTRHNFISFLYKELVRRSIRTFKDDKELENGQRFSPELKSPIEVSRFAVVVVSENYAASSWCLDEL 84 (176)
T ss_dssp --CCEEEEEEECHHHHTTTHHHHHHHHHHHTTCCEECCCC--------------CCTTEEEEEEEECTTTTTCHHHHHHH
T ss_pred CCCCCeEEEECcCcccChHHHHHHHHHHHHCCCEEEEEcccccCCCchHHHHHHHHHhCCEEEEEecCCcCCChhHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhccCCceEEeEEeecCchhhhcccCcHHHHHhhhhhcCCChhHHHHHHHHHHHhhcccceeecCCCcccchHHH
Q 044147 90 VRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNFPCEVRVQKWRDSLIQASNISGFLDSRSFRLWDHEDV 169 (177)
Q Consensus 90 ~~i~~~~~~~~~~ViPVfy~v~psdv~~q~g~f~~~f~~~~~~~~~~e~v~~W~~AL~~v~~~~G~~~~~~~~~~~~~~~ 169 (177)
++|++|.++++++||||||+|+|++||+|+|.||++|.+|+++. +++++++||.||++||+++||++.++......++|
T Consensus 85 ~~i~~~~~~~~~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~~-~~~~~~~Wr~AL~~va~~~G~~~~~~e~~~i~~Iv 163 (176)
T 3jrn_A 85 VTIMDFEKKGSITVMPIFYGVEPNHVRWQTGVLAEQFKKHASRE-DPEKVLKWRQALTNFAQLSGDCSGDDDSKLVDKIA 163 (176)
T ss_dssp HHHHHHHHTTSCEEEEEECSSCHHHHHHTCTHHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSCCEECCSCHHHHHHHHH
T ss_pred HHHHhhhccCCCEEEEEEecCCHHHhhhccCcHHHHHHHHHhcc-CHHHHHHHHHHHHHHhcccceecCCCHHHHHHHHH
Confidence 99999998899999999999999999999999999999999885 58999999999999999999999543222334677
Q ss_pred HHHHhh
Q 044147 170 YDVLTK 175 (177)
Q Consensus 170 ~~~~~~ 175 (177)
.+|+++
T Consensus 164 ~~v~~~ 169 (176)
T 3jrn_A 164 NEISNK 169 (176)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 777665
No 3
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=100.00 E-value=1.2e-37 Score=237.76 Aligned_cols=136 Identities=18% Similarity=0.367 Sum_probs=120.7
Q ss_pred CCCCeeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhhHHH
Q 044147 9 NAQSKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDE 88 (177)
Q Consensus 9 ~~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~~E 88 (177)
.+.++|||||||+++| +..|+.+|+.+|+++||++|+|++++.+|+.+.++|.++|++|+++|+|+||+|++|.||+.|
T Consensus 16 ~~~~~~dvFISy~~~D-~~~~~~~L~~~L~~~gi~v~~D~~~l~~G~~~~~~i~~ai~~s~~~i~v~S~~y~~S~wc~~E 94 (154)
T 3h16_A 16 TSAPPHDIFISHAWED-KADFVEALAHTLRAAGAEVWYDDFSLRPGDSLRRSIDKGLGSSRFGIVVLSTHFFKKEWPQKE 94 (154)
T ss_dssp --CCSEEEEEEEEGGG-TTTTHHHHHHHHHHHTCCEECGGGEECTTCCHHHHHHHHHTSEEEEEEEEEHHHHTTCCCHHH
T ss_pred CCCCCceEEEECcccC-hHHHHHHHHHHHHHCCCcEEEcHHhCCCccHHHHHHHHHHHhCcEEEEEeCcchhcChHHHHH
Confidence 4578999999999999 578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhccCCceEEeEEeecCchhhhcccCcHHHHHhhhhhcCCChhHHHHHHHHHHHh
Q 044147 89 LVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSFGEAFVHHERNFPCEVRVQKWRDSLIQA 149 (177)
Q Consensus 89 l~~i~~~~~~~~~~ViPVfy~v~psdv~~q~g~f~~~f~~~~~~~~~~e~v~~W~~AL~~v 149 (177)
|..++++..+++++||||||+++|++|++|.|.||+.|..... ...+.++-+.|.++
T Consensus 95 l~~~~~~~~~~~~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~----~~~~~~ia~~l~~l 151 (154)
T 3h16_A 95 LDGLFQLESSGRSRILPIWHKVSKDEVASFSPTMADKLAFNTS----TKSVDEIVADLMAI 151 (154)
T ss_dssp HHHHTCCCTTSCCCEEEEEESCCTGGGTTTCCCCCSSCCEETT----TSCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEEecCCHHHHhhCCccHHHHHhhhcC----cccHHHHHHHHHHH
Confidence 9999998877888999999999999999999999998865443 33455555555544
No 4
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=99.96 E-value=2.4e-31 Score=201.73 Aligned_cols=138 Identities=14% Similarity=0.260 Sum_probs=93.0
Q ss_pred CCCCCCeeeEEEecccCCCccchHHHHHHHHhc--CCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChh
Q 044147 7 NLNAQSKFDVFLSFRGEDTRTGFTSHVVEALRR--KQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTW 84 (177)
Q Consensus 7 s~~~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~--~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~w 84 (177)
|....+.|||||||+++|+ .||.+|+.+|++ .|+++|++++++.+|+.+.++|.++|++|+++|+|+||+|++|.|
T Consensus 4 ~~r~~k~YDvFISy~~~D~--~~v~~L~~~Le~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~I~VlS~~y~~S~w 81 (146)
T 3ub2_A 4 SSRWSKDYDVCVCHSEEDL--VAAQDLVSYLEGSTASLRCFLQLRDATPGGAIVSELCQALSSSHCRVLLITPGFLQDPW 81 (146)
T ss_dssp CCTTSSSEEEEEECCGGGH--HHHHHHHHHHHC------------------CCCEEECCTTCCEEEEEEEECHHHHHCHH
T ss_pred CCCCCCcceEEEeCChhhH--HHHHHHHHHHhCcCCCeEEEEECccccccccHHHHHHHHHHhCCEEEEEECcccccCHH
Confidence 3456789999999999995 689999999998 599999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhccCCceEEeEEeecCchhhhcccCcH-HHHHhhhhhcCC-ChhHHHHHHHHH
Q 044147 85 CLDELVRILDCKKRNGQIVVPVFYKVDPSDVRKQMGSF-GEAFVHHERNFP-CEVRVQKWRDSL 146 (177)
Q Consensus 85 c~~El~~i~~~~~~~~~~ViPVfy~v~psdv~~q~g~f-~~~f~~~~~~~~-~~e~v~~W~~AL 146 (177)
|+.|+..++.+...+..+||||||+++++++......+ ...+..+...|. ..+.|.+|+.||
T Consensus 82 c~~El~~al~~~~~~~~~vIpv~~~v~~~~lp~~Lr~~~~id~~~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 82 CKYQMLQALTEAPGAEGCTIPLLSGLSRAAYPPELRFMYYVDGRGPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHHHHHHHTSSSSSSEEEEEECSCCGGGSCGGGGGSCCEETTSGGGGHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhhcCCcEEEEEcCCChhhCCHHHhCeeeeeccChHhhHHHHHHHHHHHHHhc
Confidence 99999999998643344788999999866664322110 000011112221 356788888775
No 5
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=99.93 E-value=9e-27 Score=178.90 Aligned_cols=103 Identities=17% Similarity=0.349 Sum_probs=92.8
Q ss_pred CCCCeeeEEEecccCCCccchHHHHHHHHhcC--CcEEEEeCCcccCCccccHHHHhccc-cCcEEEEEeeccccCChhh
Q 044147 9 NAQSKFDVFLSFRGEDTRTGFTSHVVEALRRK--QIQFFIDDEELQRGEEISPALLSAIE-TSDISIIIFSENYASSTWC 85 (177)
Q Consensus 9 ~~~~~ydVFIS~~~~D~r~~fv~~L~~~L~~~--gi~~f~d~~~l~~G~~i~~~i~~aI~-~S~~~IvV~S~~y~~S~wc 85 (177)
+.++.|||||||+++| ..||.+|+.+|++. |+++|+|++++.+|+.+.++|.++|+ +|+++|+|+||+|++|.||
T Consensus 12 ~~~~~yDvFISys~~D--~~fv~~L~~~Le~~~~g~~~~~~~rd~~~G~~i~~~i~~~I~~~Sr~~IvVlS~~y~~S~wc 89 (160)
T 2js7_A 12 HMPERFDAFICYCPSD--IQFVQEMIRQLEQTNYRLKLCVSDRDVLPGTCVWSIASELIEKRCRRMVVVVSDDYLQSKEC 89 (160)
T ss_dssp CCTTCEEEEEECCGGG--HHHHHHHHHHHHTSSSCCCCEESCCSSSSSCSCCCCCGGGHHHHEEEEEEECCHHHHHSHHH
T ss_pred CCCcceEEEEEccccc--HHHHHHHHHHHhcCCCceEEEEeCCCCCCCCcHHHHHHHHHHHhCCEEEEEECcchhcCHHH
Confidence 3468899999999999 58999999999984 69999999999999999999999999 7999999999999999999
Q ss_pred HHHHHHHHhhh-ccCCceEEeEEeecCch
Q 044147 86 LDELVRILDCK-KRNGQIVVPVFYKVDPS 113 (177)
Q Consensus 86 ~~El~~i~~~~-~~~~~~ViPVfy~v~ps 113 (177)
+.|+..++++. .+++++||||+|+..+.
T Consensus 90 ~~El~~a~~~~~~~~~~~vIpV~~~~~~~ 118 (160)
T 2js7_A 90 DFQTKFALSLSPGAHQKRLIPIKYKAMKK 118 (160)
T ss_dssp HHHHHHHHHHCTTHHHHTEEEEESSCCCC
T ss_pred HHHHHHHHHHHHccCCCEEEEEEEcccch
Confidence 99999999875 34567899999976543
No 6
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=99.93 E-value=4.6e-27 Score=178.43 Aligned_cols=105 Identities=18% Similarity=0.363 Sum_probs=93.2
Q ss_pred CCCeeeEEEecccCCCccchHHH-HHHHHhcC--CcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhhH
Q 044147 10 AQSKFDVFLSFRGEDTRTGFTSH-VVEALRRK--QIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCL 86 (177)
Q Consensus 10 ~~~~ydVFIS~~~~D~r~~fv~~-L~~~L~~~--gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~ 86 (177)
.++.|||||||+++|+ .||.+ |+.+|++. |+++|+|++++.+|+.+.++|.++|++|+++|+|+||+|++|.||+
T Consensus 2 ~~~~yDvFiSy~~~D~--~~v~~~L~~~Le~~~~g~~~~~~~rd~~~G~~~~~~i~~~i~~Sr~~I~VlS~~y~~S~wc~ 79 (149)
T 1fyx_A 2 RNIXYDAFVSYSERDA--YWVENLMVQELENFNPPFKLXLHKRDFIHGKWIIDNIIDSIEKSHKTVFVLSENFVKSEWXK 79 (149)
T ss_dssp CSCCEEEEEECCGGGH--HHHHTHHHHHHTTSSSCCCEEEHHHHCCSSSCHHHHHHHHHHHEEEEEEEECHHHHHHHTHH
T ss_pred CCccceEEEECCcccH--HHHHHHHHHHHhcCCCCeEEeeccccCCCchhHHHHHHHHHHHcCEEEEEeCcchhccchHH
Confidence 4678999999999994 79986 99999986 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhh-hccCCceEEeEEee-cCchhhh
Q 044147 87 DELVRILDC-KKRNGQIVVPVFYK-VDPSDVR 116 (177)
Q Consensus 87 ~El~~i~~~-~~~~~~~ViPVfy~-v~psdv~ 116 (177)
.|+..++++ .++++.+||||||+ +.+..+.
T Consensus 80 ~El~~a~~~~~~~~~~~vIpv~~~~i~~~~~p 111 (149)
T 1fyx_A 80 YELDFSHFRLFDENNDAAILILLEPIEKKAIP 111 (149)
T ss_dssp HHSCCSCCTTCGGGTTCCEEEESSCCCTTTSC
T ss_pred HHHHHHHHHHHhcCCCEEEEEEecCCChhhcC
Confidence 999999864 45567789999995 4444443
No 7
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=99.92 E-value=2.3e-26 Score=179.56 Aligned_cols=102 Identities=22% Similarity=0.406 Sum_probs=88.2
Q ss_pred CCCCCeeeEEEecccCCCccchHHH-HHHHHhc--CCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChh
Q 044147 8 LNAQSKFDVFLSFRGEDTRTGFTSH-VVEALRR--KQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTW 84 (177)
Q Consensus 8 ~~~~~~ydVFIS~~~~D~r~~fv~~-L~~~L~~--~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~w 84 (177)
...++.|||||||+++|+ .||.. |+.+|++ .|+++|+|++++.+|+.+.++|.++|++|+++|+|+||+|++|.|
T Consensus 30 ~~~~~~yDvFISys~~D~--~fv~~~L~~~LE~~~~g~~~~l~~rD~~~G~~i~~~i~~aI~~Sr~~IvVlS~~yl~S~w 107 (178)
T 2j67_A 30 LKRNVRFHAFISYSEHDS--LWVKNELIPNLEKEDGSILICLYESYFDPGKSISENIVSFIEKSYKSIFVLSPNFVQNEW 107 (178)
T ss_dssp CCCSCCEEEEEECCGGGH--HHHHHTHHHHHTTCC-CCCEEEHHHHCCTTSCHHHHHHHHHHTEEEEEEEECHHHHHHTG
T ss_pred cCCCccceEEEECCCCCH--HHHHHHHHHHHhcccCCeEEEEecccCCCCccHHHHHHHHHHhCCEEEEEecccccccch
Confidence 456789999999999994 89975 9999998 899999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhh-ccCCceEEeEEeecC
Q 044147 85 CLDELVRILDCK-KRNGQIVVPVFYKVD 111 (177)
Q Consensus 85 c~~El~~i~~~~-~~~~~~ViPVfy~v~ 111 (177)
|+.|+..++.+. ++++++||||||+..
T Consensus 108 c~~El~~a~~~~~~~~~~~vIpV~~~~i 135 (178)
T 2j67_A 108 CHYEFYFAHHNLFHENSDHIILILLEPI 135 (178)
T ss_dssp GGTHHHHTTCC-------CEEEEESSCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEecCC
Confidence 999999999754 456779999999643
No 8
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=99.92 E-value=5.3e-26 Score=174.43 Aligned_cols=102 Identities=20% Similarity=0.300 Sum_probs=91.1
Q ss_pred CeeeEEEecccCCC---------ccchHHHHHH-HHh-cCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeecccc
Q 044147 12 SKFDVFLSFRGEDT---------RTGFTSHVVE-ALR-RKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYA 80 (177)
Q Consensus 12 ~~ydVFIS~~~~D~---------r~~fv~~L~~-~L~-~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~ 80 (177)
+.|||||||+++|+ ++.||.+|.. .|+ +.|+++|+|++++.+|+.+.++|.++|++|+.+|+|+||+|+
T Consensus 1 k~yDaFISy~~~D~~wv~~~~~~~~~fv~~ll~~~LE~~~g~~l~~~~rD~~~G~~i~~~i~~~I~~Sr~~IvVlS~~y~ 80 (159)
T 1t3g_A 1 KDYDAYLSYTKVDPDQWNQETGEEERFALEILPDMLEKHYGYKLFIPDRDLIPTGTYIEDVARCVDQSKRLIIVMTPNYV 80 (159)
T ss_dssp CCBSEEEECCCCC-------CCSHHHHHHTHHHHHHHHTSCCCEECHHHHCCCCTTHHHHHHHHHHTBSEEEEEECHHHH
T ss_pred CCceEEEeCccccchhhhccchhhHHHHHHHHHHHHcCCCCeEEEEEcccccCccchHHHHHHHHHHcCEEEEEEccchh
Confidence 47999999999996 4679988776 699 799999999999999999999999999999999999999997
Q ss_pred -CChhhHHHHHHHHhhh-ccCCceEEeEEeecCch
Q 044147 81 -SSTWCLDELVRILDCK-KRNGQIVVPVFYKVDPS 113 (177)
Q Consensus 81 -~S~wc~~El~~i~~~~-~~~~~~ViPVfy~v~ps 113 (177)
.|.||+.|+..++.+. .+++.+||||+|...+.
T Consensus 81 ~~S~wc~~El~~a~~~~~~~~~~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 81 VRRGWSIFELETRLRNMLVTGEIKVILIECSELRG 115 (159)
T ss_dssp HTTTTHHHHHSHHHHHHHHTTSSEEEEEECSCCCS
T ss_pred hcChHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence 9999999999999885 56678999999875554
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.77 E-value=1.9e-19 Score=167.06 Aligned_cols=103 Identities=16% Similarity=0.308 Sum_probs=92.4
Q ss_pred CCCCeeeEEEecccCCCccchH-HHHHHHHhc-----CCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCC
Q 044147 9 NAQSKFDVFLSFRGEDTRTGFT-SHVVEALRR-----KQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASS 82 (177)
Q Consensus 9 ~~~~~ydVFIS~~~~D~r~~fv-~~L~~~L~~-----~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S 82 (177)
...+.|||||||+++|. .|| ..|...|+. .|+++|++++++.||+.+.++|.++|++|+.+|+|+|++|+.|
T Consensus 666 ~~~~~yd~fisy~~~d~--~~v~~~l~~~Le~~~~~~~~~~~~~~~rd~~~G~~~~~~i~~~i~~sr~~i~vls~~~~~s 743 (844)
T 3j0a_A 666 PDMYKYDAYLCFSSKDF--TWVQNALLKHLDTQYSDQNRFNLCFEERDFVPGENRIANIQDAIWNSRKIVCLVSRHFLRD 743 (844)
T ss_dssp SSCCCCSEEEECCSTTH--HHHHHTHHHHHHSTTTTTTCSCEECSSSSCCSSSCHHHHHHHHHHHSSEEEEEECTTHHHH
T ss_pred ccceeccEEEEeeCCcH--HHHHHHHHHHHhhccccCCceEEEEEccccCCCchHHHHHHHHHHHhCeEEEEeccccccC
Confidence 35689999999999994 677 789999985 5899999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhhh-ccCCceEEeEEeecCch
Q 044147 83 TWCLDELVRILDCK-KRNGQIVVPVFYKVDPS 113 (177)
Q Consensus 83 ~wc~~El~~i~~~~-~~~~~~ViPVfy~v~ps 113 (177)
.||..|+..++.+. ++++.+||||||+..|.
T Consensus 744 ~wc~~e~~~a~~~~~~~~~~~~i~i~~~~~~~ 775 (844)
T 3j0a_A 744 GWCLEAFSYAQGRCLSDLNSALIMVVVGSLSQ 775 (844)
T ss_dssp TSTTHHHHHHHSCCCCSSCTTEEEEESSCCCS
T ss_pred hHHHHHHHHHHHHHHHhcCCcEEEEEeccCCh
Confidence 99999999998775 56778999999975543
No 10
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=98.23 E-value=2.3e-06 Score=61.39 Aligned_cols=73 Identities=10% Similarity=0.095 Sum_probs=53.5
Q ss_pred CeeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhhHHHHHH
Q 044147 12 SKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDELVR 91 (177)
Q Consensus 12 ~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~~El~~ 91 (177)
.+|.|||||+.+|. ...|...|.+.|+.. .| +.|+.|.+.|++.++....|+||..|+..
T Consensus 3 ~~~~lFISh~~~d~----~~~L~~~l~~~~f~~-~~---------------~~I~~~~~vIvL~G~~t~~s~wv~~EI~~ 62 (111)
T 1eiw_A 3 AEIRLYITEGEVED----YRVFLERLEQSGLEW-RP---------------ATPEDADAVIVLAGLWGTRRDEILGAVDL 62 (111)
T ss_dssp CCEEEEECCCCSHH----HHHHHHHHHHHCSCE-EE---------------CCSSSCSEEEEEGGGTTTSHHHHHHHHHH
T ss_pred ceEEEEEecccHhH----HHHHHHHHhCCCCee-ec---------------CccccCCEEEEEeCCCcCCChHHHHHHHH
Confidence 47999999999982 333333343444432 22 78999999999999999999999999988
Q ss_pred HHhhhccCCceEEeEEe
Q 044147 92 ILDCKKRNGQIVVPVFY 108 (177)
Q Consensus 92 i~~~~~~~~~~ViPVfy 108 (177)
+.+. +.+||-|.-
T Consensus 63 A~~~----gkpIigV~~ 75 (111)
T 1eiw_A 63 ARKS----SKPIITVRP 75 (111)
T ss_dssp HTTT----TCCEEEECC
T ss_pred HHHc----CCCEEEEEc
Confidence 7653 446777753
No 11
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=96.88 E-value=0.0033 Score=48.56 Aligned_cols=96 Identities=18% Similarity=0.185 Sum_probs=65.6
Q ss_pred ccCCCccchHHHHHHHHhcCCcEEEEeCCcc----cC----CccccHHHHhccccCcEEEEEeeccccCChhhHHHHHHH
Q 044147 21 RGEDTRTGFTSHVVEALRRKQIQFFIDDEEL----QR----GEEISPALLSAIETSDISIIIFSENYASSTWCLDELVRI 92 (177)
Q Consensus 21 ~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l----~~----G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~~El~~i 92 (177)
..+| ..+...|..--.+..+-.|.|-.+. .- -..|...|.+.|+.|+.+|+++|++...|.|...|+..+
T Consensus 27 a~~D--i~yy~lL~aWk~n~n~F~F~D~Hd~~y~vrDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~A 104 (189)
T 3hyn_A 27 STHD--FVYYNMLRMWKGEDNSFPFNDAHDKTYNVRDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYG 104 (189)
T ss_dssp GSTT--HHHHHHHHHHHHHCTTSSCCBTTTTCCCTTSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHH
T ss_pred ccch--HHHHHHHHHHHcCCCceeecchhhccccccccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHH
Confidence 4455 3455556555555566667775433 22 235778899999999999999999999999999999998
Q ss_pred HhhhccCCceEEeEEeecC-chhhhcccCc
Q 044147 93 LDCKKRNGQIVVPVFYKVD-PSDVRKQMGS 121 (177)
Q Consensus 93 ~~~~~~~~~~ViPVfy~v~-psdv~~q~g~ 121 (177)
++. .+.+||-|..+-. .+++..-.|.
T Consensus 105 i~~---~~~PII~Vy~~~~~~~~i~~~~g~ 131 (189)
T 3hyn_A 105 IGT---KGLPVIVIYPDYDKKSDIVDSNGN 131 (189)
T ss_dssp TTT---TCCCEEEEETTCCSGGGTBCTTSC
T ss_pred HHh---cCCcEEEEECCccccchhhhcccc
Confidence 722 3458888876522 3344433343
No 12
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=88.63 E-value=1.3 Score=33.04 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=57.5
Q ss_pred CeeeEEEecc--cCCCccchHHHHHHHHhcCCcEEEEeCCccc-CCccccHHHHhccccCcEEEEEeec--cccCChhhH
Q 044147 12 SKFDVFLSFR--GEDTRTGFTSHVVEALRRKQIQFFIDDEELQ-RGEEISPALLSAIETSDISIIIFSE--NYASSTWCL 86 (177)
Q Consensus 12 ~~ydVFIS~~--~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~-~G~~i~~~i~~aI~~S~~~IvV~S~--~y~~S~wc~ 86 (177)
..-.+++.-. ..+....+...+.+.|++.|+.+|...++-. .+..+...-.++|++|++.|++++| .-..+.-+.
T Consensus 9 ~~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTa 88 (161)
T 2f62_A 9 MRKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTA 88 (161)
T ss_dssp CCEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHH
T ss_pred hhceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHH
Confidence 3445555532 2332037889999999999999988543211 2234444557899999999999996 333445588
Q ss_pred HHHHHHHhhhc
Q 044147 87 DELVRILDCKK 97 (177)
Q Consensus 87 ~El~~i~~~~~ 97 (177)
.|+..+....+
T Consensus 89 fEiGyA~AlgK 99 (161)
T 2f62_A 89 FEVGCAAALNK 99 (161)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 89998877644
No 13
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=80.80 E-value=5.2 Score=29.57 Aligned_cols=79 Identities=25% Similarity=0.329 Sum_probs=51.8
Q ss_pred eEEEe--cccCCCccchHHHHHHHHhcCCcEEEEe---CCcc-cCCc-------cccHHHHhccccCcEEEEEeeccccC
Q 044147 15 DVFLS--FRGEDTRTGFTSHVVEALRRKQIQFFID---DEEL-QRGE-------EISPALLSAIETSDISIIIFSENYAS 81 (177)
Q Consensus 15 dVFIS--~~~~D~r~~fv~~L~~~L~~~gi~~f~d---~~~l-~~G~-------~i~~~i~~aI~~S~~~IvV~S~~y~~ 81 (177)
.|||+ +++.+....+...+.+.|++.| .|+.. ..++ ..|+ .+...-.++|++|++.|.+++ ..
T Consensus 4 kIYlAGP~f~~~e~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~~aD~vvA~l~---~~ 79 (152)
T 4fyk_A 4 SVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQQADVVVAEVT---QP 79 (152)
T ss_dssp EEEEECCSTTCCTTHHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHHHCSEEEEECS---SC
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHHHCCEEEEeCC---CC
Confidence 46665 3343323478899999999999 67532 1111 1122 245566678999999999988 55
Q ss_pred ChhhHHHHHHHHhhhc
Q 044147 82 STWCLDELVRILDCKK 97 (177)
Q Consensus 82 S~wc~~El~~i~~~~~ 97 (177)
+.-...|+..+....+
T Consensus 80 d~Gt~~EiG~A~algk 95 (152)
T 4fyk_A 80 SLGVGYELGRAVALGK 95 (152)
T ss_dssp CHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHcCC
Confidence 6778889999877543
No 14
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=80.09 E-value=4.2 Score=30.32 Aligned_cols=76 Identities=16% Similarity=0.200 Sum_probs=52.8
Q ss_pred cchHHHHHHHHhcC--CcEEEEeCCccc----CCc----cccHHHHhccccCcEEEEEeeccccCChhhHHHHHHHHhhh
Q 044147 27 TGFTSHVVEALRRK--QIQFFIDDEELQ----RGE----EISPALLSAIETSDISIIIFSENYASSTWCLDELVRILDCK 96 (177)
Q Consensus 27 ~~fv~~L~~~L~~~--gi~~f~d~~~l~----~G~----~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~~El~~i~~~~ 96 (177)
..+...+.++|+.. |+.+|...++-. ++. .+...-.++|++|++.|.++. ....+..+..|+..+....
T Consensus 19 ~~~~~~l~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~i~~~D~~~i~~aD~viA~ld-g~~~D~Gt~~EiG~A~a~g 97 (162)
T 3ehd_A 19 LRYNAYLVEQIRQLDKTIDLYLPQENAAINDKSAYADSKMIALADTENVLASDLLVALLD-GPTIDAGVASEIGVAYAKG 97 (162)
T ss_dssp HHHHHHHHHHHHTTCTTEEEECGGGGSCCCCTTCCCCHHHHHHHHHHHHHTCSEEEEECC-SSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCCCEEECCCccccccccccchHHHHHHHHHHHHHHHCCEEEEECC-CCCCCCCHHHHHHHHHHCC
Confidence 46788899999875 899988543321 222 234444567999999999995 3346788899999988754
Q ss_pred ccCCceEEeEE
Q 044147 97 KRNGQIVVPVF 107 (177)
Q Consensus 97 ~~~~~~ViPVf 107 (177)
+ +|+.+.
T Consensus 98 k----PVi~~~ 104 (162)
T 3ehd_A 98 I----PVVALY 104 (162)
T ss_dssp C----CEEEEC
T ss_pred C----EEEEEE
Confidence 3 565553
No 15
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens}
Probab=78.46 E-value=2.6 Score=30.51 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=40.5
Q ss_pred EEEecccCCCccchHHHHHHHHhcCCcEEEEeCC-------------cccCCccc-c----HHHHhccccCcEEEEEeec
Q 044147 16 VFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDE-------------ELQRGEEI-S----PALLSAIETSDISIIIFSE 77 (177)
Q Consensus 16 VFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~-------------~l~~G~~i-~----~~i~~aI~~S~~~IvV~S~ 77 (177)
||||.+..| +.-+-.+...|...|++++--.. .+..+..= . ++|...|++-.+-+||..|
T Consensus 27 vliSv~d~d--K~~l~~~a~~l~~lGf~i~AT~GTa~~L~~~Gi~v~~v~k~~egg~~~~~~~i~d~i~~g~i~lVInt~ 104 (143)
T 2yvq_A 27 ILIGIQQSF--RPRFLGVAEQLHNEGFKLFATEATSDWLNANNVPATPVAWPSQEGQNPSLSSIRKLIRDGSIDLVINLP 104 (143)
T ss_dssp EEEECCGGG--HHHHHHHHHHHHTTTCEEEEEHHHHHHHHHTTCCCEEECCGGGC-----CBCHHHHHHTTSCCEEEECC
T ss_pred EEEEecccc--hHHHHHHHHHHHHCCCEEEECchHHHHHHHcCCeEEEEEeccCCCcccccccHHHHHHCCCceEEEECC
Confidence 999998877 34455688888888998773211 11111110 1 4677888888888888887
Q ss_pred cc
Q 044147 78 NY 79 (177)
Q Consensus 78 ~y 79 (177)
+-
T Consensus 105 ~~ 106 (143)
T 2yvq_A 105 NN 106 (143)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 16
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=71.16 E-value=17 Score=26.74 Aligned_cols=82 Identities=18% Similarity=0.160 Sum_probs=52.9
Q ss_pred CeeeEEEecccC--CCccchHHHHHHHHhcCCcEEEEeCCc----ccCCc-------cccHHHHhccccCcEEEEEeecc
Q 044147 12 SKFDVFLSFRGE--DTRTGFTSHVVEALRRKQIQFFIDDEE----LQRGE-------EISPALLSAIETSDISIIIFSEN 78 (177)
Q Consensus 12 ~~ydVFIS~~~~--D~r~~fv~~L~~~L~~~gi~~f~d~~~----l~~G~-------~i~~~i~~aI~~S~~~IvV~S~~ 78 (177)
.+..|||+=.-. .........+.+.|++.| .|+.+..- -..|. .+...-.+.|++|++.|++++
T Consensus 10 ~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~aD~vva~~~-- 86 (165)
T 2khz_A 10 APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQADVVVAEVT-- 86 (165)
T ss_dssp CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHHCSEEEEECS--
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHhCCEEEEECC--
Confidence 456799984322 111224588999999999 88654321 01221 122333578999999999997
Q ss_pred ccCChhhHHHHHHHHhhhc
Q 044147 79 YASSTWCLDELVRILDCKK 97 (177)
Q Consensus 79 y~~S~wc~~El~~i~~~~~ 97 (177)
..+.-+..|+..+....+
T Consensus 87 -~~d~Gt~~EiGyA~algK 104 (165)
T 2khz_A 87 -QPSLGVGYELGRAVALGK 104 (165)
T ss_dssp -SCCHHHHHHHHHHHHTCS
T ss_pred -CCCCCHHHHHHHHHHCCC
Confidence 456778999999876543
No 17
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=66.09 E-value=9.4 Score=28.41 Aligned_cols=85 Identities=12% Similarity=0.205 Sum_probs=57.1
Q ss_pred eEEEe---cccCCCccchHHHHHHHHhcC--CcEEEEeCCc-c--------cCC--------ccccHHHHhccccCcEEE
Q 044147 15 DVFLS---FRGEDTRTGFTSHVVEALRRK--QIQFFIDDEE-L--------QRG--------EEISPALLSAIETSDISI 72 (177)
Q Consensus 15 dVFIS---~~~~D~r~~fv~~L~~~L~~~--gi~~f~d~~~-l--------~~G--------~~i~~~i~~aI~~S~~~I 72 (177)
.|||. |+..+ ..+...+.+.|++. |+.+|.-.++ . ..| ..|...-.++|++|++.|
T Consensus 9 kIYLAGP~F~~~~--~~~~~~~~~~L~~~~~g~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~vV 86 (167)
T 1s2d_A 9 KIYLGSPFYSDAQ--RERAAKAKELLAKNPSIAHVFFPFDDGFTDPDEKNPEIGGIRSMVWRDATYQNDLTGISNATCGV 86 (167)
T ss_dssp EEEEECCCSSHHH--HHHHHHHHHHHTTCTTEEEEECTTC-CCCCTTCC-CCTTSCCCHHHHHHHHHHHHHHHHHCSEEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHhCCCcCEEECCccccccccccccccccccCChHHHHHHHHHHHHHHHhCCEEE
Confidence 47776 33332 46889999999999 8888875432 1 111 223445557899999999
Q ss_pred EEeeccccCChhhHHHHHHHHhhhccCCceEEeE
Q 044147 73 IIFSENYASSTWCLDELVRILDCKKRNGQIVVPV 106 (177)
Q Consensus 73 vV~S~~y~~S~wc~~El~~i~~~~~~~~~~ViPV 106 (177)
.++.+.-. +.-+..|+..+....+ +|+-+
T Consensus 87 A~ldg~~~-D~GTa~EiGyA~algK----PVv~l 115 (167)
T 1s2d_A 87 FLYDMDQL-DDGSAFXIGFMRAMHK----PVILV 115 (167)
T ss_dssp EEEESSSC-CHHHHHHHHHHHHTTC----CEEEE
T ss_pred EECCCCCC-CCCceeehhhHhhCCC----eEEEE
Confidence 99987554 4558889998877543 55544
No 18
>2jug_A TUBC protein; docking domain, dimer, nonribosomal peptide synthetase, tubulysin, ligase, phosphopantetheine, biosynthetic protein; NMR {Angiococcus disciformis}
Probab=64.08 E-value=5.6 Score=25.61 Aligned_cols=40 Identities=13% Similarity=0.298 Sum_probs=29.6
Q ss_pred HHHHHHHHhcCCcEEEEeCCccc---CCccccHHHHhccccCc
Q 044147 30 TSHVVEALRRKQIQFFIDDEELQ---RGEEISPALLSAIETSD 69 (177)
Q Consensus 30 v~~L~~~L~~~gi~~f~d~~~l~---~G~~i~~~i~~aI~~S~ 69 (177)
+..|...|.+.||..|.+.+.+. |-..+.+++...+...+
T Consensus 7 ~~~ll~~l~~~gi~l~~eg~kLr~~ap~g~l~~~l~~~l~~~K 49 (78)
T 2jug_A 7 AGALLAHAASLGVRLWVEGERLRFQAPPGVMTPELQSRLGGAR 49 (78)
T ss_dssp HHHHHHHHHHHTCEEEEETTEEEEECCTTTTCHHHHHHHTTCH
T ss_pred HHHHHHHHHHcCCEEEEECCEeeeecCccccCHHHHHHHHHHH
Confidence 34677899999999999988764 44456777777666654
No 19
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=57.21 E-value=32 Score=24.60 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=37.0
Q ss_pred eeeE-EEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhcc-ccCcEEEEE
Q 044147 13 KFDV-FLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAI-ETSDISIII 74 (177)
Q Consensus 13 ~ydV-FIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI-~~S~~~IvV 74 (177)
..+| .|.-+.. ...++..+...|...||++=+|.. ..++.+...|.++- .+....|||
T Consensus 8 P~Qv~IlpVs~~--~~~YA~~V~~~L~~~GiRvevD~~--r~~e~Lg~kIR~a~~~kvPy~lVV 67 (130)
T 1v95_A 8 PVDCSVIVVNKQ--TKDYAESVGRKVRDLGMVVDLIFL--NTEVSLSQALEDVSRGGSPFAIVI 67 (130)
T ss_dssp CCTEEEEESSSG--GGHHHHHHHHHHHTTTCCEEEEEC--TTSSCHHHHHHHHHHHTCSEEEEE
T ss_pred CCeEEEEEeCcc--hHHHHHHHHHHHHHCCCEEEEecC--CCCCcHHHHHHHHHHcCCCEEEEE
Confidence 3444 3444433 368999999999999999988763 12556666666553 345544443
No 20
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1
Probab=49.96 E-value=21 Score=30.12 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=38.3
Q ss_pred eeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhc-cccCcEEEEEeec
Q 044147 13 KFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSA-IETSDISIIIFSE 77 (177)
Q Consensus 13 ~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~a-I~~S~~~IvV~S~ 77 (177)
.+||+|..-+++. ...+..|++.|++.|++|-+|.++ ..+...+..| ..+.. .++|+.+
T Consensus 332 p~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~~-~~iiiG~ 391 (434)
T 1wu7_A 332 KKSVYICRVGKIN-SSIMNEYSRKLRERGMNVTVEIME----RGLSAQLKYASAIGAD-FAVIFGE 391 (434)
T ss_dssp SCEEEEEEESSCC-HHHHHHHHHHHHTTTCEEEECCSC----CCHHHHHHHHHHTTCS-EEEEEEH
T ss_pred CCcEEEEEcChHH-HHHHHHHHHHHHHCCCeEEEecCC----CCHHHHHHHHHHCCCC-EEEEECc
Confidence 4899866555543 467889999999999999998753 2343344444 23444 4444444
No 21
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=48.11 E-value=13 Score=27.29 Aligned_cols=85 Identities=18% Similarity=0.190 Sum_probs=55.2
Q ss_pred eEEEe---cccCCCccchHHHHHHHHhcCCc----EEEEeCCccc------------CC----ccccHHHHhccccCcEE
Q 044147 15 DVFLS---FRGEDTRTGFTSHVVEALRRKQI----QFFIDDEELQ------------RG----EEISPALLSAIETSDIS 71 (177)
Q Consensus 15 dVFIS---~~~~D~r~~fv~~L~~~L~~~gi----~~f~d~~~l~------------~G----~~i~~~i~~aI~~S~~~ 71 (177)
.|||+ |+... ..+...+.++|+..|. .+|...++-. ++ ..|...-.++|++|++.
T Consensus 5 kIYLAGP~F~~~q--~~~~~~~~~~L~~~g~v~~~~v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~aD~v 82 (157)
T 1f8y_A 5 TIYFGAGWFTDRQ--NKAYKEAMEALKENPTIDLENSYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTNDIM 82 (157)
T ss_dssp CEEEECCCSSHHH--HHHHHHHHHHHHHCTTBCCTTSBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTSSEE
T ss_pred EEEEECCCCCHHH--HHHHHHHHHHHHHCCCccccceECcccccccccccccccccccChHHHHHHHHHhHHHHHhCCEE
Confidence 36665 33332 4678999999999985 6666533211 11 22344455789999999
Q ss_pred EEEeeccccCChhhHHHHHHHHhhhccCCceEEeE
Q 044147 72 IIIFSENYASSTWCLDELVRILDCKKRNGQIVVPV 106 (177)
Q Consensus 72 IvV~S~~y~~S~wc~~El~~i~~~~~~~~~~ViPV 106 (177)
|.++...-. ++-+..|+..+....+ +|+-+
T Consensus 83 vA~ldg~~~-D~GT~~EiGyA~A~gk----PVv~~ 112 (157)
T 1f8y_A 83 LGVYIPDEE-DVGLGMELGYALSQGK----YVLLV 112 (157)
T ss_dssp EEECCGGGC-CHHHHHHHHHHHHTTC----EEEEE
T ss_pred EEEcCCCCC-CccHHHHHHHHHHCCC----eEEEE
Confidence 999985443 4557889998877654 55544
No 22
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Probab=41.96 E-value=14 Score=31.58 Aligned_cols=47 Identities=15% Similarity=0.264 Sum_probs=32.5
Q ss_pred eeeEEEeccc--CCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccH
Q 044147 13 KFDVFLSFRG--EDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISP 59 (177)
Q Consensus 13 ~ydVFIS~~~--~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~ 59 (177)
.++|+|---+ .+.....+..|++.|++.|+.|-+|+++-..|..+..
T Consensus 365 p~~v~vi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~~g~k~~~ 413 (458)
T 2i4l_A 365 PFRVTILNLKQGDAATDAACDQLYRELSAKGVDVLYDDTDQRAGAKFAT 413 (458)
T ss_dssp SCSEEEEESSTTCHHHHHHHHHHHHHHHHTTCCEEEECSSCCHHHHHHH
T ss_pred CceEEEEecCCCCHHHHHHHHHHHHHHhhCCCEEEEECCCCCHHHHHHH
Confidence 4788776332 1223567899999999999999999864444544443
No 23
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=41.94 E-value=1.1e+02 Score=22.95 Aligned_cols=82 Identities=20% Similarity=0.316 Sum_probs=31.8
Q ss_pred CCCCCCCCCCCCeeeE-EEecccCCCccchHHHHHHH-Hh-----cCCcE----E-EEeCCcc------cCCccccHHHH
Q 044147 1 MASSSTNLNAQSKFDV-FLSFRGEDTRTGFTSHVVEA-LR-----RKQIQ----F-FIDDEEL------QRGEEISPALL 62 (177)
Q Consensus 1 m~sss~s~~~~~~ydV-FIS~~~~D~r~~fv~~L~~~-L~-----~~gi~----~-f~d~~~l------~~G~~i~~~i~ 62 (177)
||++...++|.++|-| +|.-++.. +.+++..+... +. --|+. . -.+...+ .+|+.-...+.
T Consensus 1 ms~~~~~~~P~k~~KivlvGd~~VG-KTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~ 79 (216)
T 4dkx_A 1 MSTGGDFGNPLRKFKLVFLGEQSVG-KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLI 79 (216)
T ss_dssp ------------CEEEEEECSTTSS-HHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGH
T ss_pred CCCCCCCCCCCCcEEEEEECcCCcC-HHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHH
Confidence 8888888888888987 55444333 23444433211 00 00110 1 1111111 25544333333
Q ss_pred -hccccCcEEEEEeeccccCCh
Q 044147 63 -SAIETSDISIIIFSENYASST 83 (177)
Q Consensus 63 -~aI~~S~~~IvV~S~~y~~S~ 83 (177)
.-.+.+..+|+|++-.-..|-
T Consensus 80 ~~~~~~a~~~ilv~di~~~~Sf 101 (216)
T 4dkx_A 80 PSYIRDSAAAVVVYDITNVNSF 101 (216)
T ss_dssp HHHHTTCSEEEEEEETTCHHHH
T ss_pred HHHhccccEEEEEeecchhHHH
Confidence 457889999999997655443
No 24
>1sc3_B Interleukin-1 beta convertase; malonate-bound caspase-1, hydrolase; 1.80A {Homo sapiens} SCOP: c.17.1.1 PDB: 1ice_B 1bmq_B* 1rwm_B* 1rwk_B* 1rwo_B* 1rwp_B* 1rwv_B* 1rww_B* 1rwn_B* 1sc1_B 1rwx_B 1sc4_B 2h4y_B* 2hbq_B* 2hbr_B* 3ns7_B* 3d6f_B* 3d6h_B* 3d6m_B* 2h4w_B* ...
Probab=40.50 E-value=8 Score=25.64 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=18.3
Q ss_pred EEecccCCCccchHHHHHHHHhcCC
Q 044147 17 FLSFRGEDTRTGFTSHVVEALRRKQ 41 (177)
Q Consensus 17 FIS~~~~D~r~~fv~~L~~~L~~~g 41 (177)
|.|||+.....+|+..|.+.|++.+
T Consensus 21 ~~S~R~~~~GSwfIq~Lc~~l~~~~ 45 (88)
T 1sc3_B 21 NVSWRHPTMGSVFIGRLIEHMQEYA 45 (88)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEcCCCCCHHHHHHHHHHHHhC
Confidence 4556666556789999999997654
No 25
>2ql9_B Caspase-7; cysteine protease, apoptosis, thiol protease, zymogen, hydro hydrolase inhibitor complex; HET: CIT; 2.14A {Homo sapiens} PDB: 2ql7_B* 2ql5_B* 2qlb_B* 2qlf_B 2qlj_B* 3edr_B 3ibc_B 3ibf_B 1i51_B
Probab=36.52 E-value=9.3 Score=25.66 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=16.2
Q ss_pred EecccCCCccchHHHHHHHHhcCC
Q 044147 18 LSFRGEDTRTGFTSHVVEALRRKQ 41 (177)
Q Consensus 18 IS~~~~D~r~~fv~~L~~~L~~~g 41 (177)
.|||+.+...+|+..|.+.|++.|
T Consensus 24 ~S~R~~~~GSwfIq~Lc~~l~~~~ 47 (97)
T 2ql9_B 24 YSWRSPGRGSWFVQALCSILEEHG 47 (97)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHT
T ss_pred EeeecCCCCCeeHHHHHHHHHHhC
Confidence 344555445688899988887654
No 26
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=36.48 E-value=62 Score=26.39 Aligned_cols=101 Identities=13% Similarity=0.277 Sum_probs=59.7
Q ss_pred eEEEecccCCC--ccchHHHHHHHHhcCCcEEEEeCC--cccCCccccHHHHhccccCcEEEEEeeccccCCh-------
Q 044147 15 DVFLSFRGEDT--RTGFTSHVVEALRRKQIQFFIDDE--ELQRGEEISPALLSAIETSDISIIIFSENYASST------- 83 (177)
Q Consensus 15 dVFIS~~~~D~--r~~fv~~L~~~L~~~gi~~f~d~~--~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~------- 83 (177)
-|||-|-|-|. +-+-+.+|...|..+|++|..-.. +-+.+..+...+..++-... -|+||-+.+-++-
T Consensus 86 ~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~~yl~R~~~~LP~~G-~IvIfDRswYs~v~~~rv~g 164 (304)
T 3czq_A 86 RVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVATFPTAG-EFVLFDRSWYNRAGVEPVMG 164 (304)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTSCTTHHHHTTCCCTT-CEEEEEECGGGGTTHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhchHHHHHHHhcccCC-eEEEEECCcchHHHHHHHhc
Confidence 48999988886 457889999999999998765321 12233444455556653322 4455555543332
Q ss_pred hhHH-HHHHHHhh------h-ccCCceEEeEEeecCchhhh
Q 044147 84 WCLD-ELVRILDC------K-KRNGQIVVPVFYKVDPSDVR 116 (177)
Q Consensus 84 wc~~-El~~i~~~------~-~~~~~~ViPVfy~v~psdv~ 116 (177)
.|-. |....++. + ...+.+++-+|++++|..-.
T Consensus 165 ~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~ 205 (304)
T 3czq_A 165 FCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQL 205 (304)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHH
Confidence 2222 12121111 1 12457888899999988753
No 27
>1qtn_B Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_B* 3kjq_B* 2y1l_B 1f9e_B* 1qdu_B*
Probab=34.87 E-value=8.9 Score=25.73 Aligned_cols=28 Identities=18% Similarity=0.347 Sum_probs=18.7
Q ss_pred eeeEEEecc---------cCCCccchHHHHHHHHhcC
Q 044147 13 KFDVFLSFR---------GEDTRTGFTSHVVEALRRK 40 (177)
Q Consensus 13 ~ydVFIS~~---------~~D~r~~fv~~L~~~L~~~ 40 (177)
.-|.+++|+ +.+...+|+..|.+.|++.
T Consensus 12 ~aDfL~~ysT~pG~~S~R~~~~GSwfIq~Lc~~l~~~ 48 (95)
T 1qtn_B 12 EADFLLGMATVNNCVSYRNPAEGTWYIQSLCQSLRER 48 (95)
T ss_dssp TCSEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCcEEEecCCCCcHHHHHHHHHHHHh
Confidence 467777665 3344467888888888764
No 28
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=34.09 E-value=32 Score=25.66 Aligned_cols=32 Identities=16% Similarity=0.418 Sum_probs=25.9
Q ss_pred EEEecccCCC--ccchHHHHHHHHhcCCcEEEEe
Q 044147 16 VFLSFRGEDT--RTGFTSHVVEALRRKQIQFFID 47 (177)
Q Consensus 16 VFIS~~~~D~--r~~fv~~L~~~L~~~gi~~f~d 47 (177)
.||.+-|-|. +.+.+..|.+.|+.+|+++..-
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 3888888874 3678899999999999987654
No 29
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*
Probab=33.96 E-value=26 Score=29.27 Aligned_cols=60 Identities=17% Similarity=0.282 Sum_probs=38.4
Q ss_pred CeeeEEEecccCCCccchHHHHHHHHhcC--CcEEEEeCCcccCCccccHHHHhcc-ccCcEEEEEeec
Q 044147 12 SKFDVFLSFRGEDTRTGFTSHVVEALRRK--QIQFFIDDEELQRGEEISPALLSAI-ETSDISIIIFSE 77 (177)
Q Consensus 12 ~~ydVFIS~~~~D~r~~fv~~L~~~L~~~--gi~~f~d~~~l~~G~~i~~~i~~aI-~~S~~~IvV~S~ 77 (177)
..+||+|..-+++. ...+..|++.|++. |++|-+|.++- .+...+..|- .+... ++|+.+
T Consensus 326 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~~~Gi~v~~d~~~~----~~~~~~~~a~~~g~p~-~iiiG~ 388 (423)
T 1htt_A 326 PVVDIYLVASGADT-QSAAMALAERLRDELPGVKLMTNHGGG----NFKKQFARADKWGARV-AVVLGE 388 (423)
T ss_dssp CSCSEEEEECSTTH-HHHHHHHHHHHHHHSTTCCEEECCSCC----CHHHHHHHHHHHTCSE-EEEECH
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHcCCCCcEEEEeCCCC----CHHHHHHHHHHcCCCE-EEEECc
Confidence 34789887755443 46788999999999 99999987543 3334444442 24444 444443
No 30
>2dko_B Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 2c2k_B* 2c2m_B* 2c2o_B* 2c1e_B* 2cdr_B* 2cnk_B* 2cnl_B* 2cnn_B* 2cno_B* 2cjy_B 1pau_B 1re1_B* 1rhk_B* 1rhm_B* 1rhq_B* 1rhr_B* 1rhu_B* 1rhj_B* 1i3o_B* 3edq_B ...
Probab=33.33 E-value=11 Score=25.62 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=19.1
Q ss_pred eeeEEEec---------ccCCCccchHHHHHHHHhcCC
Q 044147 13 KFDVFLSF---------RGEDTRTGFTSHVVEALRRKQ 41 (177)
Q Consensus 13 ~ydVFIS~---------~~~D~r~~fv~~L~~~L~~~g 41 (177)
.-|.+++| |+.....+|+..|.+.|++.|
T Consensus 16 ~aDfL~~yST~pG~vS~R~~~~GSwfIq~Lc~~l~~~~ 53 (103)
T 2dko_B 16 EADFLYAYSTAPGYYSWRNSKDGSWFIQSLCAMLKQYA 53 (103)
T ss_dssp TTTEEEEESSCTTBCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred CCCEEEEEeCCCCcEeEEcCCCCCeeHHHHHHHHHHhC
Confidence 34666665 444445678888988887644
No 31
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A
Probab=32.90 E-value=67 Score=27.45 Aligned_cols=61 Identities=13% Similarity=0.029 Sum_probs=41.5
Q ss_pred CeeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeec
Q 044147 12 SKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSE 77 (177)
Q Consensus 12 ~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ 77 (177)
...|||+...+++. ..-+-.+...|++.|+++-++.. +..+..++..|-+.---.++|+.+
T Consensus 360 ~~~~v~v~~~~~~~-~~~a~~la~~LR~~Gi~ve~~~~----~~slkkq~k~A~k~ga~~vviiGe 420 (456)
T 3lc0_A 360 HVVDDVVIPFDESM-RPHALAVLRRLRDAGRSADIILD----KKKVVQAFNYADRVGAVRAVLVAP 420 (456)
T ss_dssp CCEEEEEEESSGGG-HHHHHHHHHHHHHTTCCEEECCS----CCCHHHHHHHHHHTTEEEEEEECH
T ss_pred CCCcEEEEEcCHHH-HHHHHHHHHHHHHCCCeEEEecC----CCCHHHHHHHHHHcCCCEEEEECC
Confidence 34788887666654 35677899999999999988753 234666666665554445666654
No 32
>3aon_B V-type sodium ATPase subunit G; V-ATPase, coiled-coil, alpha/beta fold, hydrol Na(+)-ATPase, NTPA3-NTPB3, NTPC, central AXIS; HET: MSE; 2.00A {Enterococcus hirae}
Probab=32.56 E-value=50 Score=22.86 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=33.8
Q ss_pred HHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccCChhhHHHHHH
Q 044147 35 EALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYASSTWCLDELVR 91 (177)
Q Consensus 35 ~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~wc~~El~~ 91 (177)
..++-.|+.+|... .-+.+...+.+.+++ ++.|++++++.+. .+.+++..
T Consensus 15 ~GFrLaGie~~~v~----~~ee~~~~~~~l~~~-digIIlIte~ia~--~i~~~i~~ 64 (115)
T 3aon_B 15 SPFRLFGFDVQHGT----TKTEIRKTIDEMAKN-EYGVIYITEQCAN--LVPETIER 64 (115)
T ss_dssp GGGGGGTCEEECCC----SHHHHHHHHHHHHHT-TEEEEEEEHHHHT--TCHHHHHH
T ss_pred HHHHHcCCeEEEeC----CHHHHHHHHHHHHhc-CceEEEEeHHHHH--HhHHHHHH
Confidence 45566799887542 234555666777777 9999999999876 23344444
No 33
>1pyo_B Caspase-2; apoptosis, caspase, alpha-beta, thiol protease, hydrolase-HY inhibitor complex; 1.65A {Homo sapiens} SCOP: c.17.1.1 PDB: 2p2c_B 3r5j_B 3r6g_B 3r7b_B 3r7n_B 3r7s_B 3r6l_B
Probab=32.41 E-value=12 Score=25.59 Aligned_cols=24 Identities=4% Similarity=0.218 Sum_probs=16.2
Q ss_pred EecccCCCccchHHHHHHHHhcCC
Q 044147 18 LSFRGEDTRTGFTSHVVEALRRKQ 41 (177)
Q Consensus 18 IS~~~~D~r~~fv~~L~~~L~~~g 41 (177)
.|||......+|+..|.+.|++.+
T Consensus 28 ~S~R~~~~GSwFIq~Lc~~l~~~~ 51 (105)
T 1pyo_B 28 AAMRNTKRGSWYIEALAQVFSERA 51 (105)
T ss_dssp CCEEETTTEEHHHHHHHHHHHHHT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHC
Confidence 334555445788999999887643
No 34
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}
Probab=31.69 E-value=42 Score=28.66 Aligned_cols=62 Identities=11% Similarity=0.111 Sum_probs=41.1
Q ss_pred CeeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeecc
Q 044147 12 SKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSEN 78 (177)
Q Consensus 12 ~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~ 78 (177)
..+||+|..-+++. ...+-.+...|++.|++|-+|..+ ..+...+..|-+.---.++|+.++
T Consensus 370 ~p~~V~Vi~~~~~~-~~~A~~la~~LR~~Gi~ve~d~~~----~sl~~q~k~A~~~g~p~~iiiG~~ 431 (465)
T 3net_A 370 TPAQVVVVNMQDEL-MPTYLKVSQQLRQAGLNVITNFEK----RQLGKQFQAADKQGIRFCVIIGAD 431 (465)
T ss_dssp CSCCEEECCSCGGG-HHHHHHHHHHHHHTTCCEEECCSC----CCHHHHHHHHHHHTCCEEEECCHH
T ss_pred CCCeEEEEEcCHHH-HHHHHHHHHHHHHCCCEEEEEeCC----CCHHHHHHHHHHcCCCEEEEECch
Confidence 34799987655553 467889999999999999998653 344445555533323355666654
No 35
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Probab=30.51 E-value=39 Score=23.47 Aligned_cols=36 Identities=17% Similarity=0.150 Sum_probs=15.6
Q ss_pred hHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhcc
Q 044147 29 FTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAI 65 (177)
Q Consensus 29 fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI 65 (177)
+...|...+.+..=.+++---.+ +.+.+.+.|.+|.
T Consensus 15 ~~~~~~~~i~~A~~~I~i~~~~~-~~~~i~~aL~~a~ 50 (155)
T 1byr_A 15 ARVLVLSAIDSAKTSIRMMAYSF-TAPDIMKALVAAK 50 (155)
T ss_dssp HHHHHHHHHHHCSSEEEEEESSB-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhEEEEEEEEe-CCHHHHHHHHHHH
Confidence 44555555554433333322112 3334445555443
No 36
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*
Probab=29.42 E-value=31 Score=28.73 Aligned_cols=59 Identities=10% Similarity=0.153 Sum_probs=39.1
Q ss_pred eeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccc-cCcEEEEEeec
Q 044147 13 KFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIE-TSDISIIIFSE 77 (177)
Q Consensus 13 ~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~-~S~~~IvV~S~ 77 (177)
.++|+|---+++. ...+..|++.|++.|+++-+|.++ ..+...+..|-. +.. .++|+.+
T Consensus 298 p~~v~vi~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~k~~~A~~~g~p-~~iiiG~ 357 (401)
T 1evl_A 298 PVQVVIMNITDSQ-SEYVNELTQKLSNAGIRVKADLRN----EKIGFKIREHTLRRVP-YMLVCGD 357 (401)
T ss_dssp SSCEEEEESSGGG-HHHHHHHHHHHHHTTCCEEEECCS----SCHHHHHHHHHHTTCS-EEEEECH
T ss_pred CeEEEEEecCHHH-HHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHHHHhcCCC-EEEEECc
Confidence 4789876555443 578899999999999999999753 344445555533 344 4444443
No 37
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=28.98 E-value=1.6e+02 Score=25.54 Aligned_cols=104 Identities=10% Similarity=0.132 Sum_probs=62.8
Q ss_pred eeeEEEecccCCC--ccchHHHHHHHHhcCCcEEEEe--CCcccCCccccHHHHhccccCcEEEEEeeccccCCh-----
Q 044147 13 KFDVFLSFRGEDT--RTGFTSHVVEALRRKQIQFFID--DEELQRGEEISPALLSAIETSDISIIIFSENYASST----- 83 (177)
Q Consensus 13 ~ydVFIS~~~~D~--r~~fv~~L~~~L~~~gi~~f~d--~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~----- 83 (177)
.+-|+|-|-|-|+ +.+-+.+|...|.-+|++|..= ..+-+.+..+.....+.+-... -|+||-..+-+..
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~~~~yl~R~~~~lP~~G-~IvIfdRSwYs~~~v~rv 119 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEELERPPQWRFWRRLPPKG-RTGIFFGNWYSQMLYARV 119 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHHTSCTTHHHHHHCCCTT-CEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhccCChhhhHHHhCCCCC-eEEEEeCchhhHHHHHHH
Confidence 3558999988886 4578899999999999987652 2223344444444445544433 4556666543221
Q ss_pred --hhHH-H----HHHHH--hhh-ccCCceEEeEEeecCchhhhc
Q 044147 84 --WCLD-E----LVRIL--DCK-KRNGQIVVPVFYKVDPSDVRK 117 (177)
Q Consensus 84 --wc~~-E----l~~i~--~~~-~~~~~~ViPVfy~v~psdv~~ 117 (177)
.|-. | +..+- +.+ -..+..++=+|+++++.+-+.
T Consensus 120 ~g~~~~~~~~~~~~~i~~FE~~L~~~g~~i~KffL~is~eeq~k 163 (500)
T 3czp_A 120 EGHIKEAKLDQAIDAAERFERMLCDEGALLFKFWFHLSKKQLKE 163 (500)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEEEEECCHHHHHH
Confidence 3432 2 22221 222 245778999999999987654
No 38
>1bax_A M-PMV MA, M-PMV matrix protein; core protein, polyprotein, myristylation; NMR {Mason-pfizer monkey virus} SCOP: a.61.1.3 PDB: 2f76_X 2f77_X
Probab=28.66 E-value=29 Score=23.52 Aligned_cols=18 Identities=11% Similarity=0.418 Sum_probs=16.8
Q ss_pred cchHHHHHHHHhcCCcEE
Q 044147 27 TGFTSHVVEALRRKQIQF 44 (177)
Q Consensus 27 ~~fv~~L~~~L~~~gi~~ 44 (177)
..|+..|...|+.+||+|
T Consensus 9 q~fi~~lk~lLk~RgIkV 26 (94)
T 1bax_A 9 ERYVEQLKQALKTRGVKV 26 (94)
T ss_pred hHHHHHHHHHHHHcCeee
Confidence 479999999999999998
No 39
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}
Probab=27.89 E-value=72 Score=27.48 Aligned_cols=61 Identities=13% Similarity=0.065 Sum_probs=38.9
Q ss_pred CeeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccc-cCcEEEEEeec
Q 044147 12 SKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIE-TSDISIIIFSE 77 (177)
Q Consensus 12 ~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~-~S~~~IvV~S~ 77 (177)
...|||+..-+++. ...+-.|...|++.||++-+|.. .+..+...+..|-+ +.. .++|+.+
T Consensus 418 ~~~~V~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~-~~viiG~ 479 (517)
T 4g85_A 418 TETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIP-LVAIIGE 479 (517)
T ss_dssp CCCCEEEEESSSSC-HHHHHHHHHHHHHTTCCEEECSS---SSCCHHHHHHHHHHHCCC-EEEEECH
T ss_pred CCCEEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCC-EEEEECC
Confidence 45799987765553 45678999999999999977642 22345445555533 344 4444443
No 40
>2xzd_B Caspase-3; hydrolase-protein binding complex, de novo protein, apoptosi ankyrin repeat protein, ribosome display; 2.10A {Homo sapiens} PDB: 2xzt_B 2y0b_B
Probab=27.89 E-value=17 Score=25.48 Aligned_cols=25 Identities=16% Similarity=0.356 Sum_probs=17.1
Q ss_pred EEecccCCCccchHHHHHHHHhcCC
Q 044147 17 FLSFRGEDTRTGFTSHVVEALRRKQ 41 (177)
Q Consensus 17 FIS~~~~D~r~~fv~~L~~~L~~~g 41 (177)
|.|||......+|+..|++.|++.+
T Consensus 28 ~vS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (118)
T 2xzd_B 28 YYSWRNSKDGSWFIQSLCAMLKQYA 52 (118)
T ss_dssp BCCCEETTTEEHHHHHHHHHHHHHT
T ss_pred CEeeEeCCCCCccHHHHHHHHHHhC
Confidence 3445555545789999999997643
No 41
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}
Probab=27.19 E-value=66 Score=27.00 Aligned_cols=61 Identities=13% Similarity=0.065 Sum_probs=38.9
Q ss_pred CeeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccc-cCcEEEEEeec
Q 044147 12 SKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIE-TSDISIIIFSE 77 (177)
Q Consensus 12 ~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~-~S~~~IvV~S~ 77 (177)
...||++..-+++. ...+-.|+..|++.||++-+|.. .+..+...+..|-+ +.. .++|+.+
T Consensus 365 ~~~~v~v~~~~~~~-~~~a~~l~~~Lr~~Gi~ve~~~~---~~~~l~~q~k~A~~~g~~-~~viiG~ 426 (464)
T 4g84_A 365 TETQVLVASAQKKL-LEERLKLVSELWDAGIKAELLYK---KNPKLLNQLQYCEEAGIP-LVAIIGE 426 (464)
T ss_dssp CCCCEEEECSSSSC-HHHHHHHHHHHHHTTCCEECCSC---SSCCHHHHHHHHHHHTCC-EEEECCH
T ss_pred ccceEEEEeCCHHH-HHHHHHHHHHHHHCCCcEEEEeC---CCCCHHHHHHHHHHCCCC-EEEEECc
Confidence 45789998776654 45678899999999999977642 22344445555433 344 4444443
No 42
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=26.93 E-value=19 Score=23.34 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=21.6
Q ss_pred ccccCcEEEEEeeccccCChhhHHHHHHHHhh
Q 044147 64 AIETSDISIIIFSENYASSTWCLDELVRILDC 95 (177)
Q Consensus 64 aI~~S~~~IvV~S~~y~~S~wc~~El~~i~~~ 95 (177)
.+.++.++++|||++---..||-..+..++++
T Consensus 36 vLCdaeV~livfs~~gk~~~~~s~~~~~il~r 67 (77)
T 1egw_A 36 VLCDCEIALIIFNSSNKLFQYASTDMDKVLLK 67 (77)
T ss_dssp HHTTCEEEEEEECTTCCEEEEESSCHHHHHHH
T ss_pred cccCCeEEEEEECCCCCEeeCCCCCHHHHHHH
Confidence 46789999999999754444544445555554
No 43
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Probab=26.48 E-value=30 Score=30.08 Aligned_cols=63 Identities=8% Similarity=0.078 Sum_probs=39.6
Q ss_pred CeeeEEEecc-c-CC--CccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeecc
Q 044147 12 SKFDVFLSFR-G-ED--TRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSEN 78 (177)
Q Consensus 12 ~~ydVFIS~~-~-~D--~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~ 78 (177)
..|+|+|--- + .+ .-...+..|++.|++.||+|-+|+++-.+|..+...- ..+... ++++.++
T Consensus 313 aP~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~s~g~k~~~a~---~~G~p~-~iiiG~~ 379 (501)
T 1nj1_A 313 AAHQVVIVPIIFKKAAEEVMEACRELRSRLEAAGFRVHLDDRDIRAGRKYYEWE---MRGVPL-RVEIGPR 379 (501)
T ss_dssp SSCSEEEEECCSSSSHHHHHHHHHHHHHHHHTTTCCEEECCCSSCHHHHHHHHH---HEECSE-EEEECHH
T ss_pred cCceEEEEEeccCCchHHHHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHH---hcCCCE-EEEECcc
Confidence 3478877654 3 21 2357889999999999999999986544555443322 234444 4445543
No 44
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=25.87 E-value=1.7e+02 Score=20.51 Aligned_cols=50 Identities=12% Similarity=0.164 Sum_probs=32.3
Q ss_pred cchHHHHHHHHhcCCcEEEE-eCCcccCCccccHHHHhccccCcEEEEEeeccccCC
Q 044147 27 TGFTSHVVEALRRKQIQFFI-DDEELQRGEEISPALLSAIETSDISIIIFSENYASS 82 (177)
Q Consensus 27 ~~fv~~L~~~L~~~gi~~f~-d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S 82 (177)
+..+..+...|...|+.+=+ |-. +.-...+...+.+++ .|++-||-|...
T Consensus 15 ~~~A~~ia~~l~~~g~~v~~~~~~-----~~~~~~~~~~~~~~d-~ii~Gspty~g~ 65 (161)
T 3hly_A 15 DRLSQAIGRGLVKTGVAVEMVDLR-----AVDPQELIEAVSSAR-GIVLGTPPSQPS 65 (161)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETT-----TCCHHHHHHHHHHCS-EEEEECCBSSCC
T ss_pred HHHHHHHHHHHHhCCCeEEEEECC-----CCCHHHHHHHHHhCC-EEEEEcCCcCCc
Confidence 57889999999999986532 321 111234445556666 567778999643
No 45
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=25.13 E-value=1.5e+02 Score=19.57 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=29.4
Q ss_pred cchHHHHHHHHhcCCcEEE-EeCCcccCCccccHHHHhccccCcEEEEEeeccccCCh
Q 044147 27 TGFTSHVVEALRRKQIQFF-IDDEELQRGEEISPALLSAIETSDISIIIFSENYASST 83 (177)
Q Consensus 27 ~~fv~~L~~~L~~~gi~~f-~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~S~ 83 (177)
+.++..+.+.|...|+.+- ++-.+.. ...+.+.+ .|++.+|-|..+.
T Consensus 14 ~~~a~~i~~~l~~~g~~v~~~~~~~~~---------~~~l~~~d-~vi~g~p~y~~~~ 61 (137)
T 2fz5_A 14 EAMANEIEAAVKAAGADVESVRFEDTN---------VDDVASKD-VILLGCPAMGSEE 61 (137)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEETTSCC---------HHHHHTCS-EEEEECCCBTTTB
T ss_pred HHHHHHHHHHHHhCCCeEEEEEcccCC---------HHHHhcCC-EEEEEccccCCCC
Confidence 5788999999988887653 3322211 12345555 5677788886543
No 46
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}
Probab=24.90 E-value=49 Score=28.61 Aligned_cols=52 Identities=10% Similarity=-0.015 Sum_probs=32.9
Q ss_pred CCccchHHHHHHHHhcCCcEEE--EeCC-cccCCccccHHHHhccc-cCcEEEEEeecccc
Q 044147 24 DTRTGFTSHVVEALRRKQIQFF--IDDE-ELQRGEEISPALLSAIE-TSDISIIIFSENYA 80 (177)
Q Consensus 24 D~r~~fv~~L~~~L~~~gi~~f--~d~~-~l~~G~~i~~~i~~aI~-~S~~~IvV~S~~y~ 80 (177)
|.-..++..|++.|++.||+|. +|++ +-..|..+. +|-. +.. .++|+.++-+
T Consensus 361 e~~~~~A~~L~~~Lr~~GIrV~~d~Ddr~~~siGkK~r----~Ad~iGiP-y~IiVG~kEl 416 (459)
T 3ikl_A 361 LELRQVCQGLFNELLENGISVWPGYLETMQSSLEQLYS----KYDEMSIL-FTVLVTETTL 416 (459)
T ss_dssp TTHHHHHHHHHHHHHHTSCCEECGGGSSSCCTTHHHHH----HHGGGTCS-EEEEECTTST
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEeecCCcCCCHHHHHH----HHHHcCCC-EEEEECchhh
Confidence 3345789999999999999999 7764 344554443 3322 233 4555555543
No 47
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=24.89 E-value=41 Score=23.17 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=15.6
Q ss_pred ChhHHHHHHHHHHHhhccc
Q 044147 135 CEVRVQKWRDSLIQASNIS 153 (177)
Q Consensus 135 ~~e~v~~W~~AL~~v~~~~ 153 (177)
+.+..++|.+||..++.++
T Consensus 102 s~~e~~~Wv~aI~~~~~~~ 120 (120)
T 4a6h_A 102 SYESMMSWFDNLKILTSTS 120 (120)
T ss_dssp SHHHHHHHHHHHHHHCC--
T ss_pred CHHHHHHHHHHHHHHhccC
Confidence 6889999999999998753
No 48
>3rjm_B Caspase-2; caspase-2, caspase, hydrolase-hydrolase inhibitor; HET: 3PX; 2.55A {Homo sapiens}
Probab=23.93 E-value=20 Score=25.09 Aligned_cols=29 Identities=3% Similarity=0.232 Sum_probs=19.0
Q ss_pred eeeEEEecc---------cCCCccchHHHHHHHHhcCC
Q 044147 13 KFDVFLSFR---------GEDTRTGFTSHVVEALRRKQ 41 (177)
Q Consensus 13 ~ydVFIS~~---------~~D~r~~fv~~L~~~L~~~g 41 (177)
.-|.+++|+ ......+|+..|++.|++.+
T Consensus 15 eADfL~~yST~pGyvS~R~~~~GSwFIQ~Lc~vl~~~~ 52 (117)
T 3rjm_B 15 RSDMICGYACLKGTAAMRNTKRGSWYIEALAQVFSERA 52 (117)
T ss_dssp SCSEEEEESSCTTCCCEEETTTEEHHHHHHHHHHHHHT
T ss_pred ccCEEEEEcCCCCeECeeecCCCChHHHHHHHHHHHhC
Confidence 356666654 43445688888888887654
No 49
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=23.50 E-value=93 Score=21.14 Aligned_cols=45 Identities=13% Similarity=0.214 Sum_probs=33.0
Q ss_pred HHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccC
Q 044147 33 VVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYAS 81 (177)
Q Consensus 33 L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~ 81 (177)
....++-.|+.+|.-. ..+.+...+.+.+++-++.|++++++.+.
T Consensus 14 tv~GFrLaGi~~~~v~----~~ee~~~~~~~l~~~~digIIlIte~~a~ 58 (109)
T 2d00_A 14 TAQGFRLAGLEGYGAS----SAEEAQSLLETLVERGGYALVAVDEALLP 58 (109)
T ss_dssp HHHHHHHTTSEEEECS----SHHHHHHHHHHHHHHCCCSEEEEETTTCS
T ss_pred HHHHHHHcCCeEEEeC----CHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 3455667799988542 23555566777777789999999999887
No 50
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}
Probab=23.47 E-value=68 Score=27.41 Aligned_cols=64 Identities=19% Similarity=0.272 Sum_probs=41.3
Q ss_pred eeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeec
Q 044147 13 KFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSE 77 (177)
Q Consensus 13 ~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~ 77 (177)
..||+|-.-+++. ...+..+...|++.|++|-+|...-..+..+...+..|-+.---.++|+.+
T Consensus 354 p~~V~Vip~~~~~-~~~A~~ia~~LR~~Gi~ve~d~~~~~~~~sl~kq~~~A~~~g~~~~iiiG~ 417 (467)
T 4e51_A 354 GVDVYVVHQGDAA-REQAFIVAERLRDTGLDVILHCSADGAGASFKSQMKRADASGAAFAVIFGE 417 (467)
T ss_dssp CCSEEEEECSHHH-HHHHHHHHHHHHHTTCCEEECCCTTSSCCCHHHHHHHHHHTTCSEEEEECH
T ss_pred CCeEEEEEcChHH-HHHHHHHHHHHHHcCCeEEEEcccccccCCHHHHHHHHHHcCCCEEEEECc
Confidence 4788876545443 457889999999999999998641002456666666665433335555553
No 51
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}
Probab=23.16 E-value=35 Score=29.99 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=29.0
Q ss_pred cchHHHHHHHHhcC-CcEEEEeCC-cccCCccccHHHH
Q 044147 27 TGFTSHVVEALRRK-QIQFFIDDE-ELQRGEEISPALL 62 (177)
Q Consensus 27 ~~fv~~L~~~L~~~-gi~~f~d~~-~l~~G~~i~~~i~ 62 (177)
..++..|++.|... ||+|-+|++ +-.+|..+.+.-+
T Consensus 322 ~~~a~~l~~~L~~~~Girv~~Ddr~~~s~G~K~~~ael 359 (518)
T 3ial_A 322 LGKVNEIADTLKSKLGLRVSIDDDFSKSMGDKLYYYEL 359 (518)
T ss_dssp HHHHHHHHHHHHHTTCCCEEECCCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCeEEEEECCCCCCHHHHHHHHHH
Confidence 46788999999999 999999987 6777877665433
No 52
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1
Probab=22.69 E-value=31 Score=28.72 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=38.0
Q ss_pred CeeeEEEecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccc-cCcEEEEEeec
Q 044147 12 SKFDVFLSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIE-TSDISIIIFSE 77 (177)
Q Consensus 12 ~~ydVFIS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~-~S~~~IvV~S~ 77 (177)
..++|+|..-+++. ...+..|+..|++.|++|-+|.++ ..+...+..|-. +.. .++|+.+
T Consensus 328 ~p~~v~i~~~~~~~-~~~a~~l~~~Lr~~Gi~v~~d~~~----~~~~~~~~~a~~~g~p-~~iiig~ 388 (420)
T 1qe0_A 328 ENLDLFIVTMGDQA-DRYAVKLLNHLRHNGIKADKDYLQ----RKIKGQMKQADRLGAK-FTIVIGD 388 (420)
T ss_dssp CCCSEEEEECHHHH-HHHHHHHHHHHHTTTCCEEECCSC----CCHHHHHHHHHHTTCS-EEEEECH
T ss_pred CCCeEEEEEeCHHH-HHHHHHHHHHHHHCCCEEEEecCC----CCHHHHHHHHHHcCCC-EEEEECc
Confidence 34789876544332 467889999999999999998753 234444444432 344 4455544
No 53
>2i4r_A V-type ATP synthase subunit F; NESG, GR52A, ATP synthesis, hydrolase, structural genomics, protein structure initiative; 2.80A {Archaeoglobus fulgidus} SCOP: c.149.1.1
Probab=22.45 E-value=83 Score=21.24 Aligned_cols=45 Identities=18% Similarity=0.294 Sum_probs=32.0
Q ss_pred HHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeeccccC
Q 044147 34 VEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYAS 81 (177)
Q Consensus 34 ~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~ 81 (177)
...++-.|+..+... ..-+.+...+.+.+++.++.|++++.+.+.
T Consensus 21 v~GFrLaGi~~~~~~---~~~ee~~~~~~~l~~~~digIIlIte~ia~ 65 (102)
T 2i4r_A 21 TIGFMLAGISDIYEV---TSDEEIVKAVEDVLKRDDVGVVIMKQEYLK 65 (102)
T ss_dssp HHHHHHTTCCCEEEC---CSHHHHHHHHHHHHHCSSEEEEEEEGGGST
T ss_pred HHHHHHcCCCcccCC---CCHHHHHHHHHHHhhCCCeEEEEEeHHHHH
Confidence 345666788877622 122456667777778889999999999886
No 54
>3ro3_B Minsc, peptide of protein inscuteable homolog; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=22.29 E-value=63 Score=15.69 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHhh
Q 044147 136 EVRVQKWRDSLIQAS 150 (177)
Q Consensus 136 ~e~v~~W~~AL~~v~ 150 (177)
-+-|++|..-|...+
T Consensus 7 vDSV~rWmeDLr~MT 21 (22)
T 3ro3_B 7 VDSVQRWMEDLKLMT 21 (26)
T ss_pred hHHHHHHHHHHHhhc
Confidence 467999999887543
No 55
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.60 E-value=57 Score=21.48 Aligned_cols=18 Identities=11% Similarity=0.346 Sum_probs=15.7
Q ss_pred ChhHHHHHHHHHHHhhcc
Q 044147 135 CEVRVQKWRDSLIQASNI 152 (177)
Q Consensus 135 ~~e~v~~W~~AL~~v~~~ 152 (177)
+.+..+.|..||..++.+
T Consensus 104 s~~e~~~Wi~al~~a~~~ 121 (122)
T 2yry_A 104 SPEEQEAWIQAMGEAARV 121 (122)
T ss_dssp SHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHHHhc
Confidence 578899999999998765
No 56
>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}
Probab=21.25 E-value=98 Score=26.37 Aligned_cols=63 Identities=16% Similarity=0.172 Sum_probs=41.5
Q ss_pred cCCCccchHHHHHHHHhcCCcEEEEeCCccc-------CCccccHHHHhccccCcEEEEEee-ccccCChh
Q 044147 22 GEDTRTGFTSHVVEALRRKQIQFFIDDEELQ-------RGEEISPALLSAIETSDISIIIFS-ENYASSTW 84 (177)
Q Consensus 22 ~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~-------~G~~i~~~i~~aI~~S~~~IvV~S-~~y~~S~w 84 (177)
..|.|++=+-.|.+.|.++|..|.+.+-... ++-.+.+.+.+++++++..|+.-. +.|.+-.|
T Consensus 336 ~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~ 406 (446)
T 4a7p_A 336 TDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVTEWDAFRALDL 406 (446)
T ss_dssp SCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTTTTSCCH
T ss_pred CcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEeeCCHHhhcCCH
Confidence 4577888889999999999998877543221 243444566788889987555433 33544333
No 57
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=21.00 E-value=59 Score=22.41 Aligned_cols=19 Identities=26% Similarity=0.426 Sum_probs=16.7
Q ss_pred ChhHHHHHHHHHHHhhccc
Q 044147 135 CEVRVQKWRDSLIQASNIS 153 (177)
Q Consensus 135 ~~e~v~~W~~AL~~v~~~~ 153 (177)
+++..+.|.+||..++.+.
T Consensus 104 s~~e~~~Wi~al~~a~~~~ 122 (126)
T 1v5p_A 104 DQKDLKDWVEALNQASKSG 122 (126)
T ss_dssp SHHHHHHHHHHHHHTTTTS
T ss_pred CHHHHHHHHHHHHHHHhcC
Confidence 6889999999999998764
No 58
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=20.86 E-value=54 Score=22.97 Aligned_cols=58 Identities=10% Similarity=0.269 Sum_probs=37.4
Q ss_pred EecccCCCccchHHHHHHHHhcCCcEEEEeCCcccCCccccHHHHhccccCcEEEEEeecccc
Q 044147 18 LSFRGEDTRTGFTSHVVEALRRKQIQFFIDDEELQRGEEISPALLSAIETSDISIIIFSENYA 80 (177)
Q Consensus 18 IS~~~~D~r~~fv~~L~~~L~~~gi~~f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~ 80 (177)
|.-.|. ....-...|..+.+.+|+-+|.|.+ .+|+.|...|.+.+.++. ...+.+.+.
T Consensus 30 I~t~Gs-i~~~~l~~I~~~~~~r~VIi~TD~D--~~GekIRk~i~~~lp~~~--hafi~r~~~ 87 (119)
T 2fcj_A 30 VCTNGT-ISDARLEELADELEGYDVYLLADAD--EAGEKLRRQFRRMFPEAE--HLYIDRAYR 87 (119)
T ss_dssp EECCSC-CCHHHHHHHHHHTTTSEEEEECCSS--HHHHHHHHHHHHHCTTSE--EECCCTTTC
T ss_pred EEeCCc-cCHHHHHHHHHHhcCCCEEEEECCC--ccHHHHHHHHHHHCCCCc--EEeccCCcc
Confidence 444444 2233445666777788888888875 578888888888887774 334455444
No 59
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=20.21 E-value=1.7e+02 Score=22.67 Aligned_cols=57 Identities=14% Similarity=0.166 Sum_probs=31.9
Q ss_pred HHHhcCCcEE-EEeCCcccCCccccHHHHhccccCcEEEEEeeccccC-ChhhHHHHHHHHh
Q 044147 35 EALRRKQIQF-FIDDEELQRGEEISPALLSAIETSDISIIIFSENYAS-STWCLDELVRILD 94 (177)
Q Consensus 35 ~~L~~~gi~~-f~d~~~l~~G~~i~~~i~~aI~~S~~~IvV~S~~y~~-S~wc~~El~~i~~ 94 (177)
..++..|.++ +++-. -..+-.+ +.+.+++.. ...|++.+|+... ..+...++..+.+
T Consensus 113 ~~~~~~g~~~~~~~~~-~~~~~~~-~~l~~~l~~-~~~v~i~~p~nptG~~~~~~~l~~i~~ 171 (361)
T 3ftb_A 113 INAKKHGVSVVFSYLD-ENMCIDY-EDIISKIDD-VDSVIIGNPNNPNGGLINKEKFIHVLK 171 (361)
T ss_dssp HHHHHTTCEEEEEECC-TTSCCCH-HHHHHHTTT-CSEEEEETTBTTTTBCCCHHHHHHHHH
T ss_pred HHHHHcCCeEEEeecC-cccCCCH-HHHHHhccC-CCEEEEeCCCCCCCCCCCHHHHHHHHH
Confidence 3445567664 33322 1112222 677788887 6677788887543 3444556666655
No 60
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A
Probab=20.08 E-value=47 Score=28.58 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=32.6
Q ss_pred eeeEEEecccC-C---CccchHHHHHHHHhcCCcEEEEeCC-cccCCcccc
Q 044147 13 KFDVFLSFRGE-D---TRTGFTSHVVEALRRKQIQFFIDDE-ELQRGEEIS 58 (177)
Q Consensus 13 ~ydVFIS~~~~-D---~r~~fv~~L~~~L~~~gi~~f~d~~-~l~~G~~i~ 58 (177)
.++|+|---+. | .-...+..|++.|++.||+|-+|++ +-.+|..+.
T Consensus 287 P~qV~Iipi~~~~~~~~~~~~a~~l~~~Lr~~Gi~v~~D~~~~~s~g~k~~ 337 (477)
T 1hc7_A 287 PIQVVIVPIYKDESRERVLEAAQGLRQALLAQGLRVHLDDRDQHTPGYKFH 337 (477)
T ss_dssp SCSEEEEECCCTTTHHHHHHHHHHHHHHHHHTTCCEEECCCSSSCHHHHHH
T ss_pred CceEEEEEcCCcchHHHHHHHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHH
Confidence 47888765443 2 1246789999999999999999986 444555444
Done!