BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 044148
         (996 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q21106|DCAF1_CAEEL DDB1- and CUL4-associated factor homolog 1 OS=Caenorhabditis
           elegans GN=dcaf-1 PE=3 SV=5
          Length = 1701

 Score = 33.5 bits (75), Expect = 8.5,   Method: Compositional matrix adjust.
 Identities = 17/67 (25%), Positives = 39/67 (58%)

Query: 657 YIASQRNDDDPLHFKTIKFQTLPVMYRKQREDILSRRGVEGILRIVTLSFAIACILSQLF 716
           YI  +++ D  L F  +K+ T  +++RK   + +++ G+  +L++   S A   +++ L+
Sbjct: 354 YIDLEKSKDVRLTFDALKYLTSLLVHRKFALEFVNKGGIPALLKVPKTSLASVGVVTCLY 413

Query: 717 YIKHNLD 723
           YI ++ D
Sbjct: 414 YIAYSND 420


>sp|Q6G330|SYD_BARHE Aspartate--tRNA ligase OS=Bartonella henselae (strain ATCC 49882 /
           Houston 1) GN=aspS PE=3 SV=1
          Length = 596

 Score = 33.5 bits (75), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 27  HCISVLSSATELRAE-SDRIYRIRDEVNFVFGDWEQEMGIAPIMPFDDSDVRKDSPRTPE 85
           HC ++      ++A  S  ++R+RD    +F D     GI  I+    +D    + +  E
Sbjct: 8   HCAALRKCDVGIKARLSGWVHRVRDHGGILFVDLRDHFGITQIV----ADPASPAFKIIE 63

Query: 86  KIASFWVMDVDRDHRSK 102
           K+ S WV+ VD + R++
Sbjct: 64  KVRSEWVIRVDGEVRAR 80


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.135    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 377,817,251
Number of Sequences: 539616
Number of extensions: 16343518
Number of successful extensions: 33027
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 33026
Number of HSP's gapped (non-prelim): 2
length of query: 996
length of database: 191,569,459
effective HSP length: 127
effective length of query: 869
effective length of database: 123,038,227
effective search space: 106920219263
effective search space used: 106920219263
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 66 (30.0 bits)