Query 044148
Match_columns 996
No_of_seqs 126 out of 136
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 20:45:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044148.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044148hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1y4e_A Sodium/hydrogen exchang 17.5 17 0.00058 26.5 -1.1 15 853-867 10-24 (27)
2 3nfg_A DNA-directed RNA polyme 12.7 1E+02 0.0035 28.9 2.4 35 580-614 58-94 (102)
3 3nff_A RNA polymerase I subuni 9.6 1.5E+02 0.005 28.7 2.4 16 596-611 76-91 (122)
4 2yro_A Galectin-8; GAL-BIND le 7.5 2.2E+02 0.0076 27.8 2.9 23 53-75 75-97 (155)
5 3zsj_A Galectin-3; sugar bindi 5.9 1.6E+02 0.0054 28.2 0.8 22 53-75 63-84 (138)
6 3nv1_A Galectin-9, galectin 9 5.8 2.6E+02 0.0088 26.7 2.2 23 53-75 64-87 (138)
7 3b9c_A HSPC159; beta sandwich, 5.6 2.7E+02 0.0091 26.9 2.2 23 53-75 72-94 (144)
8 2ebo_A Ebola virus envelope gl 4.5 2.8E+02 0.0095 23.9 1.2 14 931-944 32-45 (74)
9 3h0o_A Beta-glucanase; 1,3-1,4 4.3 2.7E+02 0.0094 29.3 1.4 28 100-130 210-237 (240)
10 4agr_A Galectin; sugar binding 4.0 5.3E+02 0.018 25.3 3.1 18 54-72 63-80 (146)
No 1
>1y4e_A Sodium/hydrogen exchanger 1; NHE1 isoform, transmembrane, membrane protein; HET: HSL; NMR {Homo sapiens}
Probab=17.51 E-value=17 Score=26.51 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=11.3
Q ss_pred cchhHhHHhhhccCC
Q 044148 853 FLLPQVIGNFLWQTD 867 (996)
Q Consensus 853 FLLPQIi~N~~~~s~ 867 (996)
+|||+||.|+--..+
T Consensus 10 ~LLPPII~~aGy~l~ 24 (27)
T 1y4e_A 10 FLLPPIILDAGYFLP 24 (27)
T ss_dssp HHSCCSSHHHHTTGG
T ss_pred eccCccEeecccccc
Confidence 689999999854443
No 2
>3nfg_A DNA-directed RNA polymerase I subunit RPA49; triple barrel, transcription, dimerization; 2.51A {Candida glabrata}
Probab=12.68 E-value=1e+02 Score=28.87 Aligned_cols=35 Identities=26% Similarity=0.353 Sum_probs=21.2
Q ss_pred EEEeecccCce--eeEEEeeEEeCCCCeEEEEecccc
Q 044148 580 LSITEKSYSNF--SVLFLEGLYDPHVGKMYLVGCRDV 614 (996)
Q Consensus 580 i~~~~~~~~n~--s~isaEGvYD~~tG~lcmVGCR~v 614 (996)
|.|++....+. .-=.-=|||||+||+|=++-=+-+
T Consensus 58 LdY~g~e~~~~~~~~~y~VgVyDp~t~~lel~~Apl~ 94 (102)
T 3nfg_A 58 LEYDGETDELTTKTNQYMVGLYDKQSGKINLYRAPVV 94 (102)
T ss_dssp EEEEEECCHHHHHHEEEEEEEEETTTTEEEEEEECEE
T ss_pred eEEEecccccCcccccEEEEEEcCCCCeEEEEEecce
Confidence 66666433221 112234999999999988755543
No 3
>3nff_A RNA polymerase I subunit A49; tripple barrel, transcription, dimerization; 3.24A {Candida glabrata}
Probab=9.61 E-value=1.5e+02 Score=28.69 Aligned_cols=16 Identities=44% Similarity=0.710 Sum_probs=13.4
Q ss_pred eeEEeCCCCeEEEEec
Q 044148 596 EGLYDPHVGKMYLVGC 611 (996)
Q Consensus 596 EGvYD~~tG~lcmVGC 611 (996)
=|||||+||+|=++-=
T Consensus 76 VgVyDP~T~~leL~~A 91 (122)
T 3nff_A 76 VGLYDKQSGKINLYRA 91 (122)
T ss_dssp EEEEETTTTEEEEEEC
T ss_pred EEEEcCCCCeEEEEEc
Confidence 4999999999987653
No 4
>2yro_A Galectin-8; GAL-BIND lectin, sugar binding, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=7.51 E-value=2.2e+02 Score=27.81 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=18.1
Q ss_pred ccccCCccccCCCCCcccccCCC
Q 044148 53 NFVFGDWEQEMGIAPIMPFDDSD 75 (996)
Q Consensus 53 ~f~~gdw~q~~g~~pl~pf~~~~ 75 (996)
++.+|.|.+|....+.+||.-+.
T Consensus 75 s~~~g~Wg~EEr~~~~fPF~~G~ 97 (155)
T 2yro_A 75 SFLQESWGEEERNITSFPFSPGM 97 (155)
T ss_dssp EECSSCBCCCCCCCSCCCCCTTS
T ss_pred cccCCEeccceeeCCCccccCCC
Confidence 57799999998777777886554
No 5
>3zsj_A Galectin-3; sugar binding protein; HET: LAT; 0.86A {Homo sapiens} SCOP: b.29.1.3 PDB: 2nmn_A* 2nn8_A* 2nmo_A* 3t1m_A* 3t1l_A* 1kjl_A* 1kjr_A* 1a3k_A* 2xg3_A* 3zsk_A 3zsl_A 3zsm_A 3ayc_A* 3aya_A* 3ayd_A* 3aye_A*
Probab=5.94 E-value=1.6e+02 Score=28.20 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=16.4
Q ss_pred ccccCCccccCCCCCcccccCCC
Q 044148 53 NFVFGDWEQEMGIAPIMPFDDSD 75 (996)
Q Consensus 53 ~f~~gdw~q~~g~~pl~pf~~~~ 75 (996)
|+.+|.|.+|....+ |||.-+.
T Consensus 63 s~~~g~Wg~Eer~~~-~PF~~G~ 84 (138)
T 3zsj_A 63 TKLDNNWGREERQSV-FPFESGK 84 (138)
T ss_dssp EEETTEECCCEEECC-CCCCTTC
T ss_pred cccCCEeCCCeEcCC-CcccCCC
Confidence 578999999976555 8886443
No 6
>3nv1_A Galectin-9, galectin 9 short isoform variant; sugar binding, sugar binding protein; 1.50A {Homo sapiens} SCOP: b.29.1.0 PDB: 3nv2_A* 3nv3_A* 3nv4_A*
Probab=5.77 E-value=2.6e+02 Score=26.72 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=17.2
Q ss_pred ccccCCccccCCCC-CcccccCCC
Q 044148 53 NFVFGDWEQEMGIA-PIMPFDDSD 75 (996)
Q Consensus 53 ~f~~gdw~q~~g~~-pl~pf~~~~ 75 (996)
|+.+|.|.+|.... +-|||.-+.
T Consensus 64 s~~~g~Wg~Eer~~~~~~PF~~G~ 87 (138)
T 3nv1_A 64 TQIDNSWGSEERSLPRKMPFVRGQ 87 (138)
T ss_dssp EEETTEECCCBCCCSSSCCCCTTC
T ss_pred eeeCCeecCCEeecCCCCCccCCC
Confidence 67799999997664 568886443
No 7
>3b9c_A HSPC159; beta sandwich, unknown function; 1.90A {Homo sapiens} PDB: 2jj6_A
Probab=5.56 E-value=2.7e+02 Score=26.87 Aligned_cols=23 Identities=22% Similarity=0.442 Sum_probs=17.7
Q ss_pred ccccCCccccCCCCCcccccCCC
Q 044148 53 NFVFGDWEQEMGIAPIMPFDDSD 75 (996)
Q Consensus 53 ~f~~gdw~q~~g~~pl~pf~~~~ 75 (996)
++.+|.|.+|....+-+||.-+.
T Consensus 72 S~~~g~Wg~EEr~~~~~PF~~G~ 94 (144)
T 3b9c_A 72 SCISGERGEEQSAIPYFPFIPDQ 94 (144)
T ss_dssp EEETTEECCCBCCCSCCCCCTTC
T ss_pred CcCCCEeccCEeECCCCcccCCC
Confidence 56899999998766667886544
No 8
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=4.46 E-value=2.8e+02 Score=23.91 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=10.5
Q ss_pred HHHHHHHHHhCccc
Q 044148 931 AAAVYIQQKLGYEK 944 (996)
Q Consensus 931 A~~v~lQQr~g~~~ 944 (996)
-++=|+-|||||.|
T Consensus 32 ~aidfll~rwggtc 45 (74)
T 2ebo_A 32 KAIDFLLQRWGGTC 45 (74)
T ss_dssp HHHHHHHGGGTCHH
T ss_pred HHHHHHHHHhCCcc
Confidence 35678999999644
No 9
>3h0o_A Beta-glucanase; 1,3-1,4-beta-D-glucanase, CH-PI stacking interactions, TRIS inhibition, hydrolase, glycosidase; 1.40A {Fibrobacter succinogenes} SCOP: b.29.1.2 PDB: 1mve_A 1zm1_A* 2r4a_A 3hr9_A 2r49_A 3axd_A 3axe_A*
Probab=4.34 E-value=2.7e+02 Score=29.28 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=22.1
Q ss_pred cccceeeeceEEEEEEeeeccccCCCCCCCC
Q 044148 100 RSKKYVGVSGELYMGITLDESFAERPYGGNP 130 (996)
Q Consensus 100 r~~~~v~vsg~l~l~isr~~~~~~~~y~~sp 130 (996)
..+|++--.|+|+|+++|++.- .|.+.|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 237 (240)
T 3h0o_A 210 TDKNIYSRDGMLILALTRKGQE---SFNGQV 237 (240)
T ss_dssp CGGGEEEETTEEEEEEEETTCC---CCCSCC
T ss_pred cccceEEECCEEEEEEccCCCc---ccCCCC
Confidence 6789999999999999998764 354344
No 10
>4agr_A Galectin; sugar binding protein; 2.10A {Cinachyrella} PDB: 4agg_A 4agv_A
Probab=3.99 E-value=5.3e+02 Score=25.28 Aligned_cols=18 Identities=33% Similarity=0.739 Sum_probs=10.7
Q ss_pred cccCCccccCCCCCccccc
Q 044148 54 FVFGDWEQEMGIAPIMPFD 72 (996)
Q Consensus 54 f~~gdw~q~~g~~pl~pf~ 72 (996)
+++|.|.+|-...+ |||.
T Consensus 63 ~~~G~WG~EER~~~-~PF~ 80 (146)
T 4agr_A 63 FAGGEWGPEVRPEG-FPFP 80 (146)
T ss_dssp C----CCCCBCCSC-CCCB
T ss_pred ccCCccCCccEecC-CCcc
Confidence 67999999976644 8885
Done!