Query 044148
Match_columns 996
No_of_seqs 126 out of 136
Neff 4.7
Searched_HMMs 13730
Date Mon Mar 25 20:46:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044148.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044148hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1dqva2 b.7.1.2 (A:425-569) Sy 16.6 64 0.0047 28.1 4.7 64 598-676 14-79 (145)
2 d2bwqa1 b.7.1.2 (A:729-853) Re 14.0 1.5E+02 0.011 24.7 6.4 63 599-676 9-73 (125)
3 d2cm5a1 b.7.1.2 (A:541-677) C2 10.3 1.8E+02 0.013 24.4 5.7 64 598-676 9-74 (137)
4 d1kzqa2 b.6.2.1 (A:132-255) Ma 6.1 1.9E+02 0.014 25.4 3.7 27 601-639 96-122 (124)
5 d1w15a_ b.7.1.2 (A:) Synaptota 5.9 2.8E+02 0.02 23.4 4.8 64 598-676 9-74 (138)
6 d2rdea1 b.45.2.1 (A:138-247) H 4.8 3.9E+02 0.029 22.9 4.8 48 609-665 29-76 (110)
7 d1rsya_ b.7.1.2 (A:) Synaptoga 4.8 4.9E+02 0.036 21.8 5.8 60 599-676 29-91 (143)
8 d1dqva1 b.7.1.2 (A:295-424) Sy 4.4 2.9E+02 0.021 23.1 3.8 64 593-676 9-75 (130)
9 d1zaka2 g.41.2.1 (A:128-158) M 4.1 1.3E+02 0.0095 20.9 0.9 9 600-608 5-13 (31)
10 d2rkya1 g.27.1.1 (A:152-197) F 3.8 1.5E+02 0.011 22.2 1.1 17 595-611 1-17 (46)
No 1
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=16.64 E-value=64 Score=28.07 Aligned_cols=64 Identities=17% Similarity=0.150 Sum_probs=36.0
Q ss_pred EEeCCCCeEEE--EecccccccccccccccCccCCCCeeEEEEEEeCCCCCCcccCCceEEEEEecccCCCCCCccceee
Q 044148 598 LYDPHVGKMYL--VGCRDVRASWKILFDSMDLEAGLDCLIEVVVSYPPTTSRWLVNPTAKIYIASQRNDDDPLHFKTIKF 675 (996)
Q Consensus 598 vYD~~tG~lcm--VGCR~v~~~~~~~~~~~~~e~~~DC~I~V~vqfpp~~~~~~~~~~~kg~I~S~R~~~DpL~F~~l~l 675 (996)
-|||.+|+|++ +.||++... +....|..-|+|..-|-..+. . +-+=...+...+|.+=+.+.+
T Consensus 14 ~Y~~~~~~L~V~V~~a~nL~~~----------~~~~~~dpyv~v~l~~~~~~~---~--~~kT~~~~~t~~P~wne~f~F 78 (145)
T d1dqva2 14 CYLPTAGLLTVTIIKASNLKAM----------DLTGFSDPYVKASLISEGRRL---K--KRKTSIKKNTLNPTYNEALVF 78 (145)
T ss_dssp EEETTTTEEEEEEEEEESCCCC----------SSSSCCCEEEEECCCTTCCTT---S--CEECCCCCSCSSCEEEECCCC
T ss_pred EEcCCCCEEEEEEEEEeCCCCc----------CCCCCcCceEEEEEccCCccc---e--eecCEEEeCCCCceecceEEE
Confidence 47899999876 899988542 122334556666655532221 1 111122244558887777666
Q ss_pred e
Q 044148 676 Q 676 (996)
Q Consensus 676 ~ 676 (996)
.
T Consensus 79 ~ 79 (145)
T d1dqva2 79 D 79 (145)
T ss_dssp C
T ss_pred E
Confidence 3
No 2
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.02 E-value=1.5e+02 Score=24.72 Aligned_cols=63 Identities=17% Similarity=0.222 Sum_probs=38.0
Q ss_pred EeCCCCeEEE--EecccccccccccccccCccCCCCeeEEEEEEeCCCCCCcccCCceEEEEEecccCCCCCCccceeee
Q 044148 599 YDPHVGKMYL--VGCRDVRASWKILFDSMDLEAGLDCLIEVVVSYPPTTSRWLVNPTAKIYIASQRNDDDPLHFKTIKFQ 676 (996)
Q Consensus 599 YD~~tG~lcm--VGCR~v~~~~~~~~~~~~~e~~~DC~I~V~vqfpp~~~~~~~~~~~kg~I~S~R~~~DpL~F~~l~l~ 676 (996)
||+.+++|.. +.||++.. .+.+..|.--|+|.+-|-+.+. .+.+=...+...||.+=+.+.+.
T Consensus 9 y~~~~~~L~V~V~~a~~L~~----------~~~~~~~dpyVkv~l~~~~~~~-----~~~kT~~~~~t~~P~wne~f~f~ 73 (125)
T d2bwqa1 9 FDKVGHQLIVTILGAKDLPS----------REDGRPRNPYVKIYFLPDRSDK-----NKRRTKTVKKTLEPKWNQTFIYS 73 (125)
T ss_dssp EETTTTEEEEEEEEEESCCC----------CTTSCCBCEEEEEEEESSCSGG-----GEEECCCCSSBSSCEEEEEEEEC
T ss_pred EECCCCEEEEEEEEeECCCC----------cCCCCCCCEEEEEEEeCCCCCc-----cccccCEEcCCCCCEEccEEEEe
Confidence 9999999987 89999854 2234556667777775532221 12222223445588875555554
No 3
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=10.30 E-value=1.8e+02 Score=24.41 Aligned_cols=64 Identities=16% Similarity=0.314 Sum_probs=35.3
Q ss_pred EEeCCCCeEEE--EecccccccccccccccCccCCCCeeEEEEEEeCCCCCCcccCCceEEEEEecccCCCCCCccceee
Q 044148 598 LYDPHVGKMYL--VGCRDVRASWKILFDSMDLEAGLDCLIEVVVSYPPTTSRWLVNPTAKIYIASQRNDDDPLHFKTIKF 675 (996)
Q Consensus 598 vYD~~tG~lcm--VGCR~v~~~~~~~~~~~~~e~~~DC~I~V~vqfpp~~~~~~~~~~~kg~I~S~R~~~DpL~F~~l~l 675 (996)
-|+|.+|+|.. +.||++... +.....||-+.|.+ -|-..+ ..+-+-+..+...+|.|=+.+.+
T Consensus 9 ~Y~~~~~~L~V~v~~a~nL~~~--------~~~~~~dpyv~v~l--~~~~~~-----~~~~kT~v~~~t~~P~wne~f~f 73 (137)
T d2cm5a1 9 MYSTQQGGLIVGIIRCVHLAAM--------DANGYSDPFVKLWL--KPDMGK-----KAKHKTQIKKKTLNPEFNEEFFY 73 (137)
T ss_dssp EEETTTTEEEEEEEEEESCCCC--------STTSCCCEEEEEEE--ETC--------CCEEECCCCCSCSSCEEEEEEEE
T ss_pred EEECCCCEEEEEEEEEECCCCC--------CCCCCcCeEEEEEE--EcCCcc-----ceeecCEeEcCCCCCccceEEEE
Confidence 48899998865 788887532 11223455555554 332111 12222233455568998887776
Q ss_pred e
Q 044148 676 Q 676 (996)
Q Consensus 676 ~ 676 (996)
.
T Consensus 74 ~ 74 (137)
T d2cm5a1 74 D 74 (137)
T ss_dssp E
T ss_pred E
Confidence 4
No 4
>d1kzqa2 b.6.2.1 (A:132-255) Major surface antigen p30, SAG1 {Toxoplasma gondii [TaxId: 5811]}
Probab=6.10 E-value=1.9e+02 Score=25.43 Aligned_cols=27 Identities=19% Similarity=0.480 Sum_probs=19.9
Q ss_pred CCCCeEEEEecccccccccccccccCccCCCCeeEEEEE
Q 044148 601 PHVGKMYLVGCRDVRASWKILFDSMDLEAGLDCLIEVVV 639 (996)
Q Consensus 601 ~~tG~lcmVGCR~v~~~~~~~~~~~~~e~~~DC~I~V~v 639 (996)
|.+-+-++|||.....+ ..-|.+.|+|
T Consensus 96 P~~dq~f~vGC~~~~~~------------~~~C~V~V~V 122 (124)
T d1kzqa2 96 PAESKSVIIGCTGGSPE------------KHHCTVKLEF 122 (124)
T ss_dssp CSSCEEEEEEEEECSSS------------BEEEEEEEEE
T ss_pred CCCCceEEEEecCCCCC------------CCcEEEEEEe
Confidence 77888889999875432 2249998887
No 5
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=5.88 E-value=2.8e+02 Score=23.38 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=32.3
Q ss_pred EEeCCCCeEEE--EecccccccccccccccCccCCCCeeEEEEEEeCCCCCCcccCCceEEEEEecccCCCCCCccceee
Q 044148 598 LYDPHVGKMYL--VGCRDVRASWKILFDSMDLEAGLDCLIEVVVSYPPTTSRWLVNPTAKIYIASQRNDDDPLHFKTIKF 675 (996)
Q Consensus 598 vYD~~tG~lcm--VGCR~v~~~~~~~~~~~~~e~~~DC~I~V~vqfpp~~~~~~~~~~~kg~I~S~R~~~DpL~F~~l~l 675 (996)
-|+|.+|+|+. +.|+++... +.....||=+.|.+. |...+ ..+-+=+..+...+|.+=+.+.+
T Consensus 9 ~Y~~~~~~L~V~v~~a~~L~~~--------~~~~~~dpyvkv~l~--~~~~~-----~~~~kT~~~~~t~~P~wne~f~F 73 (138)
T d1w15a_ 9 CYQSTTNTLTVVVLKARHLPKS--------DVSGLSDPYVKVNLY--HAKKR-----ISKKKTHVKKCTPNAVFNELFVF 73 (138)
T ss_dssp EEETTTTEEEEEEEEEESCC--------------CCCEEEEEEEE--ETTEE-----EEEEECCCCCSCSSEEEEEEEEE
T ss_pred EEcCCCCEEEEEEEEeECCCCC--------CCCCCcCEEEEEEEe--CCccc-----CccccceeECCCCCCeECcEEEE
Confidence 48899998875 788888542 112235665555542 21111 11111112234458887776666
Q ss_pred e
Q 044148 676 Q 676 (996)
Q Consensus 676 ~ 676 (996)
.
T Consensus 74 ~ 74 (138)
T d1w15a_ 74 D 74 (138)
T ss_dssp E
T ss_pred E
Confidence 4
No 6
>d2rdea1 b.45.2.1 (A:138-247) Hypothetical protein VCA0042, C-terminal domain {Vibrio cholerae O395 [TaxId: 345073]}
Probab=4.85 E-value=3.9e+02 Score=22.94 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=31.7
Q ss_pred EecccccccccccccccCccCCCCeeEEEEEEeCCCCCCcccCCceEEEEEecccCC
Q 044148 609 VGCRDVRASWKILFDSMDLEAGLDCLIEVVVSYPPTTSRWLVNPTAKIYIASQRNDD 665 (996)
Q Consensus 609 VGCR~v~~~~~~~~~~~~~e~~~DC~I~V~vqfpp~~~~~~~~~~~kg~I~S~R~~~ 665 (996)
-|||-+..+..-. -.++=+|.+.|.-|-...+- -+-.+|.|-++.+.+
T Consensus 29 sGCrFvt~p~sr~-------~qvgd~v~l~v~~~~~g~~~--~~PL~G~icnlQkS~ 76 (110)
T d2rdea1 29 SGCRFITPPLGKT-------YQVGDLVALEIFSDLRGTKT--FPPLTGKICNLQRSL 76 (110)
T ss_dssp SEEEEEECTTSCC-------CCTTCEEEEEEBSSTTSSCB--CSCEEEEEEEEEECS
T ss_pred cCceEEcCCCCCc-------eecCCeEEEEEEcCCCCCcc--cCCccceeecchhhh
Confidence 3899987754332 25566777777665554453 267899999887654
No 7
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.81 E-value=4.9e+02 Score=21.81 Aligned_cols=60 Identities=17% Similarity=0.229 Sum_probs=33.8
Q ss_pred EeCCCCeEEE--EecccccccccccccccCccCCCCeeEEEEEEeCCCCCCcccCCceEEEEEec-ccCCCCCCccceee
Q 044148 599 YDPHVGKMYL--VGCRDVRASWKILFDSMDLEAGLDCLIEVVVSYPPTTSRWLVNPTAKIYIASQ-RNDDDPLHFKTIKF 675 (996)
Q Consensus 599 YD~~tG~lcm--VGCR~v~~~~~~~~~~~~~e~~~DC~I~V~vqfpp~~~~~~~~~~~kg~I~S~-R~~~DpL~F~~l~l 675 (996)
||+.+++|.. +.||++... +.+.-|.--|+|.+.|-..+. .| +++ |...+|.+=+.+.+
T Consensus 29 y~~~~~~L~V~V~~a~~L~~~----------~~~g~~dpyV~v~l~~~~~~~-----~k---T~~~~~t~~P~wne~f~f 90 (143)
T d1rsya_ 29 YDFQNNQLLVGIIQAAELPAL----------DMGGTSDPYVKVFLLPDKKKK-----FE---TKVHRKTLNPVFNEQFTF 90 (143)
T ss_dssp EETTTTEEEEEEEEEESCCCC----------STTSCCCEEEEEEEETTCCSC-----EE---CCCCTTCSSCEEEEEEEE
T ss_pred EeCCCCEEEEEEEEccCCCCC----------CCCCCCCeEEEEEEcCCCCee-----EE---EEEeccccCcceeeeeEE
Confidence 7888888754 899998532 122234445556665532221 11 222 44558888777666
Q ss_pred e
Q 044148 676 Q 676 (996)
Q Consensus 676 ~ 676 (996)
.
T Consensus 91 ~ 91 (143)
T d1rsya_ 91 K 91 (143)
T ss_dssp C
T ss_pred E
Confidence 4
No 8
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=4.40 E-value=2.9e+02 Score=23.08 Aligned_cols=64 Identities=19% Similarity=0.239 Sum_probs=36.4
Q ss_pred EEEeeEEeCCCCeE--EEEecccccccccccccccCccCCCCeeEEEEEEeCCCCCCcccCCceEEEEEeccc-CCCCCC
Q 044148 593 LFLEGLYDPHVGKM--YLVGCRDVRASWKILFDSMDLEAGLDCLIEVVVSYPPTTSRWLVNPTAKIYIASQRN-DDDPLH 669 (996)
Q Consensus 593 isaEGvYD~~tG~l--cmVGCR~v~~~~~~~~~~~~~e~~~DC~I~V~vqfpp~~~~~~~~~~~kg~I~S~R~-~~DpL~ 669 (996)
++++ ||+++|+| .++.||++... +.....||= |+|.+-|-..+ +-+ +++.. ..+|.+
T Consensus 9 ~sl~--y~~~~~~L~V~V~~a~~L~~~--------~~~g~~dpy--v~v~l~~~~~~-------~~k-T~v~~~t~~P~w 68 (130)
T d1dqva1 9 FALR--YLYGSDQLVVRILQALDLPAK--------DSNGFSDPY--VKIYLLPDRKK-------KFQ-TKVHRKTLNPIF 68 (130)
T ss_dssp EEEE--CCSSSCEEEEEEEEEECCCCC--------STTSCCCEE--EEEECTTSTTS-------CEE-CCCCCSCSSCEE
T ss_pred EEEE--EECCCCEEEEEEEeeeCCccc--------cCCCCcceE--EEEEEccCCCc-------eEe-ceeEcCCCCeee
Confidence 4454 89999998 67889888542 122234555 44555332111 112 33333 448988
Q ss_pred ccceeee
Q 044148 670 FKTIKFQ 676 (996)
Q Consensus 670 F~~l~l~ 676 (996)
=+.+.+.
T Consensus 69 ne~f~f~ 75 (130)
T d1dqva1 69 NETFQFS 75 (130)
T ss_dssp EEEEEEE
T ss_pred eeEEEEE
Confidence 8777664
No 9
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=4.15 E-value=1.3e+02 Score=20.91 Aligned_cols=9 Identities=56% Similarity=1.054 Sum_probs=6.5
Q ss_pred eCCCCeEEE
Q 044148 600 DPHVGKMYL 608 (996)
Q Consensus 600 D~~tG~lcm 608 (996)
||+||.+|=
T Consensus 5 DP~TG~iYH 13 (31)
T d1zaka2 5 DPVTGKIYH 13 (31)
T ss_dssp CTTTCCEEE
T ss_pred CCCCCcEeE
Confidence 777777773
No 10
>d2rkya1 g.27.1.1 (A:152-197) Fibronectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.80 E-value=1.5e+02 Score=22.19 Aligned_cols=17 Identities=35% Similarity=0.583 Sum_probs=14.1
Q ss_pred EeeEEeCCCCeEEEEec
Q 044148 595 LEGLYDPHVGKMYLVGC 611 (996)
Q Consensus 595 aEGvYD~~tG~lcmVGC 611 (996)
||==||+.+|+.|-||=
T Consensus 1 ad~C~D~~~g~~Y~IGe 17 (46)
T d2rkya1 1 AEKCFDHAAGTSYVVGE 17 (46)
T ss_dssp CCEEEETTTTEEEETTC
T ss_pred CcccccCCCceEEEcCC
Confidence 46679999999999883
Done!