Query 044150
Match_columns 381
No_of_seqs 224 out of 786
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 20:47:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044150.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044150hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dfx_A Trans-acting T-cell-spe 99.6 5.2E-16 1.8E-20 120.1 4.0 42 294-339 6-47 (63)
2 1gnf_A Transcription factor GA 99.5 2.4E-15 8.1E-20 110.0 4.1 39 294-333 3-41 (46)
3 2vut_I AREA, nitrogen regulato 99.5 1.3E-15 4.5E-20 109.9 2.6 37 296-333 2-38 (43)
4 2kae_A GATA-type transcription 99.5 5.2E-15 1.8E-19 116.9 3.7 43 294-339 7-49 (71)
5 4gat_A Nitrogen regulatory pro 99.5 1.5E-14 5E-19 112.9 2.2 42 294-339 8-49 (66)
6 4hc9_A Trans-acting T-cell-spe 99.4 1.4E-13 4.7E-18 117.0 4.4 39 294-333 58-96 (115)
7 4hc9_A Trans-acting T-cell-spe 99.1 2E-11 7E-16 103.6 3.1 37 294-331 4-40 (115)
8 1pft_A TFIIB, PFTFIIBN; N-term 70.8 1.3 4.6E-05 31.3 1.0 41 295-338 5-47 (50)
9 1dl6_A Transcription factor II 70.6 1.6 5.5E-05 32.5 1.5 41 295-338 11-53 (58)
10 3cw2_K Translation initiation 62.4 3 0.0001 36.3 1.8 31 296-327 104-134 (139)
11 2d74_B Translation initiation 58.8 3.1 0.00011 36.7 1.2 31 296-327 105-135 (148)
12 1nee_A EIF-2-beta, probable tr 54.7 3.1 0.00011 36.2 0.5 30 296-326 103-132 (138)
13 3k7a_M Transcription initiatio 54.5 5.2 0.00018 38.5 2.1 34 295-329 21-54 (345)
14 1k81_A EIF-2-beta, probable tr 52.3 1.4 4.9E-05 30.1 -1.6 30 297-327 2-31 (36)
15 2b0o_E UPLC1; arfgap, structur 47.5 6.5 0.00022 36.0 1.5 32 295-328 42-73 (301)
16 2iqj_A Stromal membrane-associ 47.3 5.9 0.0002 34.1 1.1 33 295-329 27-59 (134)
17 1qyp_A RNA polymerase II; tran 45.2 3 0.0001 30.4 -0.9 35 295-329 15-55 (57)
18 2crr_A Stromal membrane-associ 44.5 7.7 0.00026 33.7 1.4 43 295-339 29-72 (141)
19 2apo_B Ribosome biogenesis pro 44.0 8.7 0.0003 29.3 1.4 50 295-363 6-55 (60)
20 2crw_A ARF GAP 3, ADP-ribosyla 41.3 10 0.00036 33.3 1.7 44 295-340 29-73 (149)
21 3dwd_A ADP-ribosylation factor 40.9 9.8 0.00034 33.6 1.5 44 295-340 38-82 (147)
22 2owa_A Arfgap-like finger doma 39.8 14 0.00047 32.1 2.2 48 295-344 36-84 (138)
23 2yrk_A Zinc finger homeobox pr 38.3 7.3 0.00025 29.5 0.2 18 311-328 7-24 (55)
24 2p57_A GTPase-activating prote 37.5 7.4 0.00025 34.2 0.2 43 295-339 37-80 (144)
25 2g2k_A EIF-5, eukaryotic trans 36.4 5.6 0.00019 35.9 -0.8 33 296-328 97-130 (170)
26 3cng_A Nudix hydrolase; struct 33.5 12 0.00043 31.8 0.9 30 295-324 3-32 (189)
27 2zjr_Z 50S ribosomal protein L 32.7 12 0.0004 28.3 0.6 27 292-328 27-53 (60)
28 2olm_A Nucleoporin-like protei 32.3 15 0.0005 31.9 1.2 33 295-329 25-57 (140)
29 2e9h_A EIF-5, eukaryotic trans 31.5 8.3 0.00028 34.3 -0.5 33 296-328 104-137 (157)
30 2yrc_A Protein transport prote 30.3 13 0.00044 27.9 0.4 38 291-328 5-44 (59)
31 2bsj_A Chaperone protein SYCT; 29.8 14 0.00048 31.9 0.6 15 152-166 96-111 (133)
32 2aus_D NOP10, ribosome biogene 29.7 19 0.00064 27.5 1.2 51 295-364 5-55 (60)
33 1pqv_S STP-alpha, transcriptio 26.2 17 0.00058 34.8 0.6 35 294-328 267-307 (309)
34 3po3_S Transcription elongatio 25.4 24 0.00083 31.4 1.4 36 293-328 135-176 (178)
35 3jue_A Arfgap with coiled-coil 25.1 25 0.00085 33.7 1.5 31 295-327 45-75 (368)
36 3sub_A ADP-ribosylation factor 23.6 37 0.0013 30.4 2.2 33 295-329 22-54 (163)
37 1tfi_A Transcriptional elongat 22.9 16 0.00054 26.5 -0.3 36 293-328 7-48 (50)
38 1dcq_A PYK2-associated protein 21.6 43 0.0015 30.1 2.3 32 295-328 17-48 (278)
39 4bbr_M Transcription initiatio 20.1 21 0.00071 34.6 -0.2 32 296-328 22-53 (345)
No 1
>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*
Probab=99.59 E-value=5.2e-16 Score=120.14 Aligned_cols=42 Identities=36% Similarity=0.831 Sum_probs=37.5
Q ss_pred CCcccccCCCCCCCcccCCCCCCchhhhhhhhhHHhCCCCCCCCCC
Q 044150 294 VTRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFPEYRPA 339 (381)
Q Consensus 294 ~~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykkgrllp~yrpa 339 (381)
....|.||+++.||+||+||.|. +|||||||||++++. +||.
T Consensus 6 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~~~~---~RP~ 47 (63)
T 3dfx_A 6 AGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKLHNI---NRPL 47 (63)
T ss_dssp TTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHHHSS---CCCG
T ss_pred CCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHHcCC---CCCc
Confidence 45789999999999999999996 999999999998774 5664
No 2
>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A
Probab=99.55 E-value=2.4e-15 Score=110.02 Aligned_cols=39 Identities=41% Similarity=0.824 Sum_probs=35.3
Q ss_pred CCcccccCCCCCCCcccCCCCCCchhhhhhhhhHHhCCCC
Q 044150 294 VTRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLF 333 (381)
Q Consensus 294 ~~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykkgrll 333 (381)
..+.|.||++++||+||+||.|. +|||||||||++++..
T Consensus 3 ~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~ 41 (46)
T 1gnf_A 3 EARECVNCGATATPLWRRDRTGH-YLCNACGLYHKMNGQN 41 (46)
T ss_dssp CSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHHHHHTCSC
T ss_pred CCCCCCCcCCCCCCcCccCCCCC-ccchHHHHHHHHcCCC
Confidence 46889999999999999999996 9999999999987643
No 3
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=99.54 E-value=1.3e-15 Score=109.92 Aligned_cols=37 Identities=43% Similarity=0.908 Sum_probs=34.0
Q ss_pred cccccCCCCCCCcccCCCCCCchhhhhhhhhHHhCCCC
Q 044150 296 RRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLF 333 (381)
Q Consensus 296 r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykkgrll 333 (381)
+.|.||++++||+||+||+|. +|||||||||++++.+
T Consensus 2 ~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~~k~~~~~ 38 (43)
T 2vut_I 2 TTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGVV 38 (43)
T ss_dssp CCCSSSCCCCCSCCEECTTSC-EECHHHHHHHHHHSSC
T ss_pred CcCCccCCCCCCccccCCCCC-cccHHHHHHHHHhCCC
Confidence 579999999999999999996 9999999999987743
No 4
>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}
Probab=99.51 E-value=5.2e-15 Score=116.94 Aligned_cols=43 Identities=30% Similarity=0.565 Sum_probs=35.2
Q ss_pred CCcccccCCCCCCCcccCCCCCCchhhhhhhhhHHhCCCCCCCCCC
Q 044150 294 VTRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFPEYRPA 339 (381)
Q Consensus 294 ~~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykkgrllp~yrpa 339 (381)
....|+||++++||+||+|+.+.++|||||||||++++ .+||.
T Consensus 7 ~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~~~~---~~RP~ 49 (71)
T 2kae_A 7 KSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYN---KTRPV 49 (71)
T ss_dssp -CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHHHHH---SCCCT
T ss_pred CCCcCCccCCCCCCccccCCCCCCccchHHHHHHHHhC---CCCCc
Confidence 46899999999999999965554599999999999765 35664
No 5
>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*
Probab=99.45 E-value=1.5e-14 Score=112.89 Aligned_cols=42 Identities=43% Similarity=0.853 Sum_probs=36.9
Q ss_pred CCcccccCCCCCCCcccCCCCCCchhhhhhhhhHHhCCCCCCCCCC
Q 044150 294 VTRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFPEYRPA 339 (381)
Q Consensus 294 ~~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykkgrllp~yrpa 339 (381)
..+.|.||++++||+||+||.|. +|||||||||++++. .||.
T Consensus 8 ~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~---~RP~ 49 (66)
T 4gat_A 8 GPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFLKLHGV---VRPL 49 (66)
T ss_dssp SSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHHHHHCS---CCCG
T ss_pred CCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHHHHcCC---CCch
Confidence 46899999999999999999995 999999999997664 4554
No 6
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.39 E-value=1.4e-13 Score=116.96 Aligned_cols=39 Identities=33% Similarity=0.792 Sum_probs=35.5
Q ss_pred CCcccccCCCCCCCcccCCCCCCchhhhhhhhhHHhCCCC
Q 044150 294 VTRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLF 333 (381)
Q Consensus 294 ~~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykkgrll 333 (381)
....|+||+++.||+||+||+| ++|||||||||++++..
T Consensus 58 ~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~~~~~~~ 96 (115)
T 4hc9_A 58 AGTSCANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNIN 96 (115)
T ss_dssp TTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHSSC
T ss_pred ccccCCCcCCCCcceeEECCCC-CCcchHHHHHHHHhCCC
Confidence 3589999999999999999999 89999999999987643
No 7
>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A
Probab=99.12 E-value=2e-11 Score=103.64 Aligned_cols=37 Identities=43% Similarity=0.937 Sum_probs=32.8
Q ss_pred CCcccccCCCCCCCcccCCCCCCchhhhhhhhhHHhCC
Q 044150 294 VTRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGR 331 (381)
Q Consensus 294 ~~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykkgr 331 (381)
..+.|.|||++.||+||+|+.| .+|||||||||+.++
T Consensus 4 ~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl~~Kl~G 40 (115)
T 4hc9_A 4 MGRECVNCGATSTPLWRRDGTG-HYLCNACGLYHKMNG 40 (115)
T ss_dssp --CCCTTTCCSCCSSCEECTTS-CEECHHHHHHHHHHS
T ss_pred CCCCCCCCCCccCCcceECCCC-CCcCcchhhhhhhcc
Confidence 4689999999999999999999 799999999998644
No 8
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=70.76 E-value=1.3 Score=31.34 Aligned_cols=41 Identities=22% Similarity=0.516 Sum_probs=27.1
Q ss_pred CcccccCCCCCCCcccCCCCCCchhhhhhhhhHHhCCCC--CCCCC
Q 044150 295 TRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLF--PEYRP 338 (381)
Q Consensus 295 ~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykkgrll--p~yrp 338 (381)
...|-+|+.. ++-.....| ...|..||+-|....+- |+||.
T Consensus 5 ~~~CP~C~~~--~l~~d~~~g-elvC~~CG~v~~e~~id~~~ewr~ 47 (50)
T 1pft_A 5 QKVCPACESA--ELIYDPERG-EIVCAKCGYVIEENIIDMGPEWRA 47 (50)
T ss_dssp CCSCTTTSCC--CEEEETTTT-EEEESSSCCBCCCCCCCCCSSSSC
T ss_pred cEeCcCCCCc--ceEEcCCCC-eEECcccCCcccccccccCCcccc
Confidence 4679999773 333333345 78999999988755443 66664
No 9
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=70.59 E-value=1.6 Score=32.50 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=28.5
Q ss_pred CcccccCCCCCCCcccCCCCCCchhhhhhhhhHHhCCC--CCCCCC
Q 044150 295 TRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRL--FPEYRP 338 (381)
Q Consensus 295 ~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykkgrl--lp~yrp 338 (381)
...|.+|+... .-.....| .+.|..||+-+..+.+ -||||.
T Consensus 11 ~~~Cp~C~~~~--lv~D~~~g-e~vC~~CGlVl~e~~iD~gpEWR~ 53 (58)
T 1dl6_A 11 RVTCPNHPDAI--LVEDYRAG-DMICPECGLVVGDRVIDVGSEWRT 53 (58)
T ss_dssp CCSBTTBSSSC--CEECSSSC-CEECTTTCCEECCSCCCCCCSCCC
T ss_pred cccCcCCCCCc--eeEeCCCC-eEEeCCCCCEEeccccccCCcccc
Confidence 35799998754 44444455 7999999999875433 377775
No 10
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=62.41 E-value=3 Score=36.31 Aligned_cols=31 Identities=26% Similarity=0.404 Sum_probs=21.6
Q ss_pred cccccCCCCCCCcccCCCCCCchhhhhhhhhH
Q 044150 296 RRCSHCGVQKTPQWRTGPLGAKTLCNACGVRY 327 (381)
Q Consensus 296 r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~y 327 (381)
..|..|+...|-+-+.+..- -.-|+|||-.-
T Consensus 104 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~~ 134 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSW-YIVCLACGAQT 134 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTT-TSSCCC-----
T ss_pred eECCCCCCcCcEEEEeCCeE-EEEecCCCCCC
Confidence 68999999999999876433 56899999653
No 11
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=58.78 E-value=3.1 Score=36.68 Aligned_cols=31 Identities=26% Similarity=0.519 Sum_probs=24.8
Q ss_pred cccccCCCCCCCcccCCCCCCchhhhhhhhhH
Q 044150 296 RRCSHCGVQKTPQWRTGPLGAKTLCNACGVRY 327 (381)
Q Consensus 296 r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~y 327 (381)
..|..|+...|-+-+.+..- -.-|+|||-..
T Consensus 105 VlC~~C~sPdT~L~k~~r~~-~l~C~ACGa~~ 135 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFH-FLKCEACGAET 135 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSB-CCCCSSSCCCC
T ss_pred EECCCCCCcCcEEEEeCCEE-EEEecCCCCCc
Confidence 57999999999999865332 46899999654
No 12
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=54.70 E-value=3.1 Score=36.21 Aligned_cols=30 Identities=30% Similarity=0.657 Sum_probs=24.3
Q ss_pred cccccCCCCCCCcccCCCCCCchhhhhhhhh
Q 044150 296 RRCSHCGVQKTPQWRTGPLGAKTLCNACGVR 326 (381)
Q Consensus 296 r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ 326 (381)
..|..|+...|-+-+.+..- -.-|+|||-.
T Consensus 103 VlC~~C~sPdT~l~k~~r~~-~l~C~ACGa~ 132 (138)
T 1nee_A 103 VICHECNRPDTRIIREGRIS-LLKCEACGAK 132 (138)
T ss_dssp HHHTCCSSCSSCCEEETTTT-EEECSTTSCC
T ss_pred EECCCCCCcCcEEEEcCCeE-EEEccCCCCC
Confidence 57999999999999875333 5689999954
No 13
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=54.54 E-value=5.2 Score=38.48 Aligned_cols=34 Identities=21% Similarity=0.456 Sum_probs=19.5
Q ss_pred CcccccCCCCCCCcccCCCCCCchhhhhhhhhHHh
Q 044150 295 TRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKS 329 (381)
Q Consensus 295 ~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykk 329 (381)
...|.+||...+-.-..-..| .+.|..||+-..-
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G-~~vC~~CG~Vl~e 54 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEG-DVVCALCGLVLSD 54 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSC-SCCCSSSCCCCCC
T ss_pred CCcCcCCCCCCCceEEECCCC-CEecCCCCeEccc
Confidence 356777776532232233345 6777777776643
No 14
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=52.28 E-value=1.4 Score=30.14 Aligned_cols=30 Identities=30% Similarity=0.591 Sum_probs=22.3
Q ss_pred ccccCCCCCCCcccCCCCCCchhhhhhhhhH
Q 044150 297 RCSHCGVQKTPQWRTGPLGAKTLCNACGVRY 327 (381)
Q Consensus 297 ~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~y 327 (381)
.|..|+..+|-+-+++..- -.-|+|||-..
T Consensus 2 lC~~C~~peT~l~~~~~~~-~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVH-LLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEE-EEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcE-EEEhhcCCCcc
Confidence 5999999999988864222 34699999654
No 15
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=47.50 E-value=6.5 Score=36.03 Aligned_cols=32 Identities=28% Similarity=0.763 Sum_probs=27.0
Q ss_pred CcccccCCCCCCCcccCCCCCCchhhhhhhhhHH
Q 044150 295 TRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYK 328 (381)
Q Consensus 295 ~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~yk 328 (381)
.+.|..||... |.|-.-..| ..+|-.|--..+
T Consensus 42 n~~c~dc~~~~-p~w~s~~~g-~~~c~~cs~~hr 73 (301)
T 2b0o_E 42 NSQCCDCGAAD-PTWLSTNLG-VLTCIQCSGVHR 73 (301)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHH
T ss_pred CCcCCCCCCCC-CCeEEeecC-eEEcHHHHHHHH
Confidence 58999999975 999999999 899999954444
No 16
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=47.28 E-value=5.9 Score=34.11 Aligned_cols=33 Identities=21% Similarity=0.670 Sum_probs=28.4
Q ss_pred CcccccCCCCCCCcccCCCCCCchhhhhhhhhHHh
Q 044150 295 TRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKS 329 (381)
Q Consensus 295 ~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykk 329 (381)
.+.|.+||... |.|-.=..| -.+|-.|.-..+.
T Consensus 27 N~~CaDCg~~~-P~WaS~n~G-vfiC~~CsgiHR~ 59 (134)
T 2iqj_A 27 NKFCADCQSKG-PRWASWNIG-VFICIRCAGIHRN 59 (134)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHH
T ss_pred CCcCCcCcCCC-CCeEEecCC-EEEhHhhhHHHhc
Confidence 58999999875 999999999 8999999776664
No 17
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=45.17 E-value=3 Score=30.38 Aligned_cols=35 Identities=29% Similarity=0.611 Sum_probs=26.0
Q ss_pred CcccccCCCCC----CCcccCCCCCCc--hhhhhhhhhHHh
Q 044150 295 TRRCSHCGVQK----TPQWRTGPLGAK--TLCNACGVRYKS 329 (381)
Q Consensus 295 ~r~Cs~Cgt~~----TP~WRrGP~G~~--tLCNACGl~ykk 329 (381)
...|.+||-.. +-|||...++.. +.|..||-+|+.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 46799999854 357888766632 589999988863
No 18
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.48 E-value=7.7 Score=33.68 Aligned_cols=43 Identities=19% Similarity=0.587 Sum_probs=31.8
Q ss_pred CcccccCCCCCCCcccCCCCCCchhhhhhhhhHHh-CCCCCCCCCC
Q 044150 295 TRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKS-GRLFPEYRPA 339 (381)
Q Consensus 295 ~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykk-grllp~yrpa 339 (381)
.+.|.+||... |.|-.=..| -.+|-.|.-..+. |.-+..+|..
T Consensus 29 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VkSl 72 (141)
T 2crr_A 29 NKYCADCEAKG-PRWASWNIG-VFICIRCAGIHRNLGVHISRVKSV 72 (141)
T ss_dssp GSSCSSSCCSS-CCSEETTTT-EECCHHHHHHHHHHCTTTCCCBCS
T ss_pred CCcCCCCCCCC-CCeEEeccC-eEEhhhhhHhHhcCCCCCCeeeEC
Confidence 58999999864 999998999 8999999766654 4333444443
No 19
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=44.04 E-value=8.7 Score=29.32 Aligned_cols=50 Identities=26% Similarity=0.561 Sum_probs=35.0
Q ss_pred CcccccCCCCCCCcccCCCCCCchhhhhhhhhHHhCCCCCCCCCCCCCCCccchhhchhhHHHHHHHhh
Q 044150 295 TRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFPEYRPACSPTFSSELHSNHHRKVMEMRRKK 363 (381)
Q Consensus 295 ~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykkgrllp~yrpa~sPt~~~~~hsn~hrkvie~Rr~k 363 (381)
.+.|..||+-.- +..|-.||.... .+..+.|+..-.-..+|-.++.|-..
T Consensus 6 mr~C~~CgvYTL----------k~~CP~CG~~T~---------~~hParfSp~Dky~~yR~~~kk~~~~ 55 (60)
T 2apo_B 6 MKKCPKCGLYTL----------KEICPKCGEKTV---------IPKPPKFSLEDRWGKYRRMLKRALKN 55 (60)
T ss_dssp CEECTTTCCEES----------SSBCSSSCSBCB---------CCCCCCCCTTCTTHHHHHHHHHHHHT
T ss_pred ceeCCCCCCEec----------cccCcCCCCcCC---------CCCCCCCCCCcchHHHHHHHHHHhcc
Confidence 578888876544 457888886543 35556888888888888777766543
No 20
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.27 E-value=10 Score=33.30 Aligned_cols=44 Identities=27% Similarity=0.594 Sum_probs=33.1
Q ss_pred CcccccCCCCCCCcccCCCCCCchhhhhhhhhHHh-CCCCCCCCCCC
Q 044150 295 TRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKS-GRLFPEYRPAC 340 (381)
Q Consensus 295 ~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykk-grllp~yrpa~ 340 (381)
.+.|.+|+.. -|.|-.=..| -.+|-.|.-..+. |.-+..+|...
T Consensus 29 N~~CaDCga~-~P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~ 73 (149)
T 2crw_A 29 NKVCFDCGAK-NPSWASITYG-VFLCIDCSGSHRSLGVHLSFIRSTE 73 (149)
T ss_dssp TSBCSSSCCB-SCCCEETTTT-EECCHHHHHHHHHHCTTTCCEECSS
T ss_pred CCcCCCCcCC-CCCcEEeccC-EEEchhcchhhccCCCCCCeeeccc
Confidence 5899999975 5999999999 8999999777665 44344455443
No 21
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=40.88 E-value=9.8 Score=33.60 Aligned_cols=44 Identities=27% Similarity=0.579 Sum_probs=33.2
Q ss_pred CcccccCCCCCCCcccCCCCCCchhhhhhhhhHHh-CCCCCCCCCCC
Q 044150 295 TRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKS-GRLFPEYRPAC 340 (381)
Q Consensus 295 ~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykk-grllp~yrpa~ 340 (381)
.+.|.+|+... |.|-.=..| -.+|-.|.-..+. |.-+...|...
T Consensus 38 N~~CaDCga~~-P~WaS~nlG-vfiC~~CSgiHR~LG~hISkVkSl~ 82 (147)
T 3dwd_A 38 NNVCFECGAFN-PQWVSVTYG-IWICLECSGRHRGLGVHLSFVRSVT 82 (147)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHHHCTTTCCEEESC
T ss_pred CCccCCCCCCC-CCeEEeccc-EeEhHhhChHHhcCCCCCCcccccc
Confidence 58999999875 999999999 8999999877765 33344444443
No 22
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=39.78 E-value=14 Score=32.10 Aligned_cols=48 Identities=21% Similarity=0.490 Sum_probs=35.0
Q ss_pred CcccccCCCCCCCcccCCCCCCchhhhhhhhhHHh-CCCCCCCCCCCCCCC
Q 044150 295 TRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKS-GRLFPEYRPACSPTF 344 (381)
Q Consensus 295 ~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykk-grllp~yrpa~sPt~ 344 (381)
.+.|.+||... |.|-.=..| -.+|-.|.-..+. |.-+...|....-++
T Consensus 36 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hiS~VrSl~lD~w 84 (138)
T 2owa_A 36 NRTCFDCESRN-PTWLSLSFA-VFICLNCSSDHRKMGVHISFVRSSDLDKF 84 (138)
T ss_dssp GGBCTTTCCBS-CCEEETTTT-EEECHHHHHHHHTTCTTTCCEEETTTSCC
T ss_pred CCcCCCCcCCC-CCeEEecCC-EEEhHhhhHHHhCCCCCCCeeeecCcCcC
Confidence 58999999875 999999999 8999999887775 333344454433333
No 23
>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4
Probab=38.26 E-value=7.3 Score=29.49 Aligned_cols=18 Identities=44% Similarity=0.966 Sum_probs=16.1
Q ss_pred CCCCCCchhhhhhhhhHH
Q 044150 311 TGPLGAKTLCNACGVRYK 328 (381)
Q Consensus 311 rGP~G~~tLCNACGl~yk 328 (381)
.||.||++-|.-||+.|.
T Consensus 7 ~~~~~P~~eC~lC~vkYs 24 (55)
T 2yrk_A 7 GGTDGTKPECTLCGVKYS 24 (55)
T ss_dssp CCCCCCCSCCTTTTCCCC
T ss_pred CCCCCCCccccccCcccc
Confidence 578999999999999996
No 24
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=37.46 E-value=7.4 Score=34.19 Aligned_cols=43 Identities=28% Similarity=0.631 Sum_probs=33.1
Q ss_pred CcccccCCCCCCCcccCCCCCCchhhhhhhhhHHh-CCCCCCCCCC
Q 044150 295 TRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKS-GRLFPEYRPA 339 (381)
Q Consensus 295 ~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykk-grllp~yrpa 339 (381)
.+.|.+||... |.|-.=..| -.+|-.|.-..+. |.-+..+|..
T Consensus 37 N~~CaDCga~~-P~WaS~n~G-vfiC~~CsgiHR~LG~hIS~VrSl 80 (144)
T 2p57_A 37 NKACFDCGAKN-PSWASITYG-VFLCIDCSGVHRSLGVHLSFIRST 80 (144)
T ss_dssp GGBCTTTCCBS-CCEEEGGGT-EEECHHHHHHHHHHCTTTCCEEES
T ss_pred CCcCCCCcCCC-CCeEEeccC-EEEhhhchHHHcCCCCCCCeeeec
Confidence 58999999865 999988889 8899999877775 4444445543
No 25
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=36.41 E-value=5.6 Score=35.85 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=24.4
Q ss_pred cccccCCCCCCCcccCCCCC-CchhhhhhhhhHH
Q 044150 296 RRCSHCGVQKTPQWRTGPLG-AKTLCNACGVRYK 328 (381)
Q Consensus 296 r~Cs~Cgt~~TP~WRrGP~G-~~tLCNACGl~yk 328 (381)
..|..|+...|-+-+....+ --.-|+|||-..-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~~ 130 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 130 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCccc
Confidence 57999999999998832122 1357999997654
No 26
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=33.47 E-value=12 Score=31.76 Aligned_cols=30 Identities=23% Similarity=0.543 Sum_probs=26.2
Q ss_pred CcccccCCCCCCCcccCCCCCCchhhhhhh
Q 044150 295 TRRCSHCGVQKTPQWRTGPLGAKTLCNACG 324 (381)
Q Consensus 295 ~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACG 324 (381)
.+.|..||...+.....|..+....|-.||
T Consensus 3 ~~~C~~CG~~~~~~~~~G~~~~~~~~~~~~ 32 (189)
T 3cng_A 3 MKFCSQCGGEVILRIPEGDTLPRYICPKCH 32 (189)
T ss_dssp CCBCTTTCCBCEEECCTTCSSCEEEETTTT
T ss_pred cccCchhCCccccccccCCCCcceECCCCC
Confidence 478999999998888788888788999999
No 27
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=32.72 E-value=12 Score=28.31 Aligned_cols=27 Identities=26% Similarity=0.733 Sum_probs=19.7
Q ss_pred CCCCcccccCCCCCCCcccCCCCCCchhhhhhhhhHH
Q 044150 292 GQVTRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYK 328 (381)
Q Consensus 292 ~~~~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~yk 328 (381)
......|.+||..+- ++.+|-.|| +|+
T Consensus 27 ~p~l~~c~~cG~~~~---------pH~vc~~CG-~Y~ 53 (60)
T 2zjr_Z 27 APNLTECPQCHGKKL---------SHHICPNCG-YYD 53 (60)
T ss_dssp CCCCEECTTTCCEEC---------TTBCCTTTC-BSS
T ss_pred CCCceECCCCCCEeC---------CceEcCCCC-cCC
Confidence 345788999997633 378999999 443
No 28
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=32.30 E-value=15 Score=31.88 Aligned_cols=33 Identities=21% Similarity=0.677 Sum_probs=28.2
Q ss_pred CcccccCCCCCCCcccCCCCCCchhhhhhhhhHHh
Q 044150 295 TRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKS 329 (381)
Q Consensus 295 ~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykk 329 (381)
.+.|.+||.. -|.|-.=..| -.+|-.|.-..+.
T Consensus 25 N~~CaDCg~~-~P~WaS~n~G-vfiC~~CsgiHR~ 57 (140)
T 2olm_A 25 NRKCFDCDQR-GPTYVNMTVG-SFVCTSCSGSLRG 57 (140)
T ss_dssp GGSCTTTCSS-CCCEEETTTT-EEECHHHHHHHTT
T ss_pred CCcCCCCCCC-CCCceeeccC-EEEchhccchhcc
Confidence 5899999986 5999999999 8999999776664
No 29
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.49 E-value=8.3 Score=34.32 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=24.0
Q ss_pred cccccCCCCCCCcccCCCCC-CchhhhhhhhhHH
Q 044150 296 RRCSHCGVQKTPQWRTGPLG-AKTLCNACGVRYK 328 (381)
Q Consensus 296 r~Cs~Cgt~~TP~WRrGP~G-~~tLCNACGl~yk 328 (381)
..|..|+...|-+-+....+ --.-|+|||-..-
T Consensus 104 VlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~~ 137 (157)
T 2e9h_A 104 VLCPECENPETDLHVNPKKQTIGNSCKACGYRGM 137 (157)
T ss_dssp TSCTTTCCSCCEEEEETTTTEEEEECSSSCCEEE
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccCCCCCCc
Confidence 57999999999998721122 2357999997654
No 30
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=30.29 E-value=13 Score=27.92 Aligned_cols=38 Identities=21% Similarity=0.267 Sum_probs=32.0
Q ss_pred CCCCCccccc--CCCCCCCcccCCCCCCchhhhhhhhhHH
Q 044150 291 WGQVTRRCSH--CGVQKTPQWRTGPLGAKTLCNACGVRYK 328 (381)
Q Consensus 291 ~~~~~r~Cs~--Cgt~~TP~WRrGP~G~~tLCNACGl~yk 328 (381)
......+|.. |++---|.++-...|..-.||-|+.+-.
T Consensus 5 ~~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~~N~ 44 (59)
T 2yrc_A 5 SSGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQ 44 (59)
T ss_dssp SCCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCCEEE
T ss_pred CCCCCcccCCCCCCeEECCceEEECCCCEEEcccCCCcCC
Confidence 3456789998 9999999999888887889999997653
No 31
>2bsj_A Chaperone protein SYCT; type III secretion, effector, YOPT; 1.83A {Yersinia enterocolitica} PDB: 2bho_A 2bsh_A 2bsi_A
Probab=29.81 E-value=14 Score=31.87 Aligned_cols=15 Identities=33% Similarity=1.057 Sum_probs=12.7
Q ss_pred chhhhH-hhhhhhccc
Q 044150 152 DVANLE-WLSHFVEDS 166 (381)
Q Consensus 152 D~aeLE-WlS~fVdDS 166 (381)
|||||| ||-+|+||=
T Consensus 96 dvaelqAWlErFIdDi 111 (133)
T 2bsj_A 96 DIDEMQAWLERFIDDI 111 (133)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 668886 999999995
No 32
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=29.71 E-value=19 Score=27.53 Aligned_cols=51 Identities=29% Similarity=0.505 Sum_probs=33.1
Q ss_pred CcccccCCCCCCCcccCCCCCCchhhhhhhhhHHhCCCCCCCCCCCCCCCccchhhchhhHHHHHHHhhc
Q 044150 295 TRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFPEYRPACSPTFSSELHSNHHRKVMEMRRKKE 364 (381)
Q Consensus 295 ~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykkgrllp~yrpa~sPt~~~~~hsn~hrkvie~Rr~k~ 364 (381)
.+.|..||+-.- +..|-.||.... .+..+.|+..-....+|-.|+.|-...
T Consensus 5 mr~C~~Cg~YTL----------k~~CP~CG~~t~---------~ahParfSP~Dky~~yR~~lKk~~~~~ 55 (60)
T 2aus_D 5 IRKCPKCGRYTL----------KETCPVCGEKTK---------VAHPPRFSPEDPYGEYRRRLKRELLGI 55 (60)
T ss_dssp CEECTTTCCEES----------SSBCTTTCSBCE---------ESSCCCCCSCCTTHHHHHHHHHHHTTC
T ss_pred ceECCCCCCEEc----------cccCcCCCCccC---------CCCCCCCCCCCchHHHHHHHHHHhccc
Confidence 577888865432 346777776543 244567888777788887777665444
No 33
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=26.20 E-value=17 Score=34.84 Aligned_cols=35 Identities=29% Similarity=0.604 Sum_probs=25.4
Q ss_pred CCcccccCCCCCCCcc----cCCCCCCc--hhhhhhhhhHH
Q 044150 294 VTRRCSHCGVQKTPQW----RTGPLGAK--TLCNACGVRYK 328 (381)
Q Consensus 294 ~~r~Cs~Cgt~~TP~W----RrGP~G~~--tLCNACGl~yk 328 (381)
....|..||-.+.-.| |...+|-. +.|..||-+|+
T Consensus 267 ~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w~ 307 (309)
T 1pqv_S 267 DRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRWK 307 (309)
T ss_pred ccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCcee
Confidence 3568999998876443 65655532 58999999986
No 34
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=25.44 E-value=24 Score=31.42 Aligned_cols=36 Identities=28% Similarity=0.513 Sum_probs=24.4
Q ss_pred CCCcccccCCCCCC---Ccc-cCCCCCC--chhhhhhhhhHH
Q 044150 293 QVTRRCSHCGVQKT---PQW-RTGPLGA--KTLCNACGVRYK 328 (381)
Q Consensus 293 ~~~r~Cs~Cgt~~T---P~W-RrGP~G~--~tLCNACGl~yk 328 (381)
+....|..||-... ..+ |.+.+|- -+.|..||-+|+
T Consensus 135 t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w~ 176 (178)
T 3po3_S 135 TDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRWK 176 (178)
T ss_dssp BSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEEC
T ss_pred cCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCeec
Confidence 34578999997763 222 5554442 248999999986
No 35
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=25.10 E-value=25 Score=33.75 Aligned_cols=31 Identities=32% Similarity=0.745 Sum_probs=26.1
Q ss_pred CcccccCCCCCCCcccCCCCCCchhhhhhhhhH
Q 044150 295 TRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRY 327 (381)
Q Consensus 295 ~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~y 327 (381)
.+.|.+|+.. -|.|-.=..| -.+|-.|.--.
T Consensus 45 n~~c~dc~~~-~p~w~s~~~g-~~~c~~c~~~h 75 (368)
T 3jue_A 45 NAQCCDCREP-APEWASINLG-VTLCIQCSGIH 75 (368)
T ss_dssp TTBCTTTCCB-SCCEEETTTT-EEECHHHHHHH
T ss_pred cCcCCCCCCC-CCCeEEecCC-eEEcHhHHHHH
Confidence 5899999986 5999999999 89999995333
No 36
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=23.59 E-value=37 Score=30.44 Aligned_cols=33 Identities=30% Similarity=0.753 Sum_probs=27.8
Q ss_pred CcccccCCCCCCCcccCCCCCCchhhhhhhhhHHh
Q 044150 295 TRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYKS 329 (381)
Q Consensus 295 ~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~ykk 329 (381)
.+.|..|+.. -|.|-.=..| -.+|-.|.-..+.
T Consensus 22 N~~CaDCga~-~P~WaS~nlG-vflCi~CSGiHR~ 54 (163)
T 3sub_A 22 NNKCFDCGIS-NPDWVSVNHG-IFLCINCSGVHRS 54 (163)
T ss_dssp GGBCTTTCCB-SCCEEETTTT-EEECHHHHHHHHH
T ss_pred CCccccCCCC-CCCeEEecCC-eeEHHhhhHHhcC
Confidence 5899999996 5999998899 8999999665554
No 37
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=22.89 E-value=16 Score=26.49 Aligned_cols=36 Identities=28% Similarity=0.563 Sum_probs=25.3
Q ss_pred CCCcccccCCCCCCC----cccCCCCCCc--hhhhhhhhhHH
Q 044150 293 QVTRRCSHCGVQKTP----QWRTGPLGAK--TLCNACGVRYK 328 (381)
Q Consensus 293 ~~~r~Cs~Cgt~~TP----~WRrGP~G~~--tLCNACGl~yk 328 (381)
+....|..||-.+.- |=|...+|-. +.|..||-+|+
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w~ 48 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWK 48 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEEE
T ss_pred eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeEE
Confidence 345689999987743 3466666633 48999998875
No 38
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=21.60 E-value=43 Score=30.05 Aligned_cols=32 Identities=28% Similarity=0.720 Sum_probs=26.1
Q ss_pred CcccccCCCCCCCcccCCCCCCchhhhhhhhhHH
Q 044150 295 TRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYK 328 (381)
Q Consensus 295 ~r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~yk 328 (381)
...|..||... |.|-.=..| -.+|-.|--..+
T Consensus 17 n~~c~dc~~~~-p~w~s~~~g-~~~c~~c~~~hr 48 (278)
T 1dcq_A 17 NDVCCDCGAPD-PTWLSTNLG-ILTCIECSGIHR 48 (278)
T ss_dssp TTBCTTTCCBS-CCEEETTTT-EEECHHHHHHHH
T ss_pred CCcCCCCCCCC-CCeEEecCC-eEEcHHHHHHHh
Confidence 58899999985 699999999 889999943333
No 39
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=20.06 E-value=21 Score=34.57 Aligned_cols=32 Identities=22% Similarity=0.479 Sum_probs=14.4
Q ss_pred cccccCCCCCCCcccCCCCCCchhhhhhhhhHH
Q 044150 296 RRCSHCGVQKTPQWRTGPLGAKTLCNACGVRYK 328 (381)
Q Consensus 296 r~Cs~Cgt~~TP~WRrGP~G~~tLCNACGl~yk 328 (381)
..|.+|+...+-.--.-..| .+.|..||+-..
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G-~~vC~~CGlVl~ 53 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEG-DVVCALCGLVLS 53 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGT-EEEETTTCBEEE
T ss_pred CcCCCCCCCCCceeEECCCC-cEEeCCCCCCcc
Confidence 34666665322222222233 556666665443
Done!