BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044152
(300 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GUM5|NICA_ARATH Nicastrin OS=Arabidopsis thaliana GN=At3g52640/At3g52650 PE=2 SV=1
Length = 676
Score = 266 bits (681), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/281 (53%), Positives = 190/281 (67%), Gaps = 30/281 (10%)
Query: 45 ISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLI 104
I P+S M ++ ++ ++ EDFD F NKFYHSHLDD++NINSS+ VAAAS++
Sbjct: 401 IPPSSLMAFMRKNPQTS-----AVVLEDFDTNFVNKFYHSHLDDLSNINSSSVVAAASVV 455
Query: 105 ARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDL----------------- 147
AR+LYILASDN D +S LG+I+VN S VEEL+ CLL+CEP L
Sbjct: 456 ARTLYILASDNKDTSNSALGSIHVNASFVEELLTCLLACEPGLSCNLVKDYISPTNTCPG 515
Query: 148 HYVGVVVGEPSFKPYLGYVDDVSRFVWNFLADRTSTPKENASSSCSKD-CTNEDEHFLPS 206
+Y GV++GEPS KPYLGYV DVSRF+WNFLAD+TS K N +S CSK C+ DE + +
Sbjct: 516 NYAGVILGEPSSKPYLGYVGDVSRFLWNFLADKTSVQKGNTTSVCSKGVCSKTDEVCIKA 575
Query: 207 LN-------VANHRYVLAYSTRLMFESGTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWV 259
+ V+ RYV AYSTRL + G W +LP NSSDSMG VDPV TESNW+T+ + V
Sbjct: 576 ESNKEGTCVVSTTRYVPAYSTRLKYNDGAWTILPQNSSDSMGMVDPVWTESNWDTLRVHV 635
Query: 260 YTIQNGAYDHLILIGGIAVTISAYFMIALARSFITKALKRD 300
YT+Q+ AYD+ +L+ GI VT AY I A+S ITKALK+D
Sbjct: 636 YTVQHSAYDNAVLVAGITVTTLAYIGILAAKSIITKALKQD 676
>sp|B3R5S0|GLYA_CUPTR Serine hydroxymethyltransferase OS=Cupriavidus taiwanensis (strain
R1 / LMG 19424) GN=glyA PE=3 SV=1
Length = 415
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 18/151 (11%)
Query: 57 FQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASDNN 116
Q +V+ + F A T +F + N AAV A +LIAR L I+ S
Sbjct: 258 IQGGPLMHVIAGKAVAFKEALTPEFKAYQQQVVKN----AAVLAETLIARGLRIV-SGRT 312
Query: 117 DMHSSV--LGAINVNTSLVEELMG--------CLLSCEPDLHYV--GVVVGEPSFKPYLG 164
+ H + L A N+ E ++G + +P+ +V G+ VG P+ G
Sbjct: 313 ESHVMLVDLRAKNITGKEAERILGEAHLTVNKNAIPNDPEKPFVTSGIRVGSPAMT-TRG 371
Query: 165 YVDDVSRFVWNFLADRTSTPKENASSSCSKD 195
+ ++ +R V N +AD P + A+ + ++
Sbjct: 372 FKEEEARIVGNLIADVLDNPHDAANIAAVRE 402
>sp|Q0K7W0|GLYA_CUPNH Serine hydroxymethyltransferase OS=Cupriavidus necator (strain ATCC
17699 / H16 / DSM 428 / Stanier 337) GN=glyA PE=3 SV=1
Length = 415
Score = 36.6 bits (83), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 18/151 (11%)
Query: 57 FQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASDNN 116
Q +V+ + F A T +F + N AAV A +LIAR L I+ S
Sbjct: 258 IQGGPLMHVIAGKAVAFKEALTPEFKEYQQQVVKN----AAVLAETLIARGLRIV-SGRT 312
Query: 117 DMHSSV--LGAINVNTSLVEELMG--------CLLSCEPDLHYV--GVVVGEPSFKPYLG 164
+ H + L A N+ E ++G + +P+ +V G+ +G P+ G
Sbjct: 313 ESHVMLVDLRAKNITGKEAERILGEAHITVNKNAIPNDPEKPFVTSGIRLGSPAMT-TRG 371
Query: 165 YVDDVSRFVWNFLADRTSTPKENASSSCSKD 195
+ ++ +R V N +AD P + A+ + ++
Sbjct: 372 FKEEEARIVGNLIADVLDNPHDAANIASVRE 402
>sp|Q474L3|GLYA1_CUPPJ Serine hydroxymethyltransferase 1 OS=Cupriavidus pinatubonensis
(strain JMP134 / LMG 1197) GN=glyA1 PE=3 SV=1
Length = 415
Score = 35.8 bits (81), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 60/140 (42%), Gaps = 18/140 (12%)
Query: 57 FQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASDNN 116
Q +V+ + F A T +F + N AAV A +LIAR L I+ S
Sbjct: 258 IQGGPLMHVIAGKAVAFKEALTPEFKAYQEQVVKN----AAVLAETLIARGLRIV-SGRT 312
Query: 117 DMHSSV--LGAINVNTSLVEELMG--------CLLSCEPDLHYV--GVVVGEPSFKPYLG 164
+ H + L A N+ E ++G + +P+ +V G+ VG P+ G
Sbjct: 313 ESHVMLVDLRAKNITGKEAERILGEAHLTVNKNAIPNDPEKPFVTSGIRVGSPAMT-TRG 371
Query: 165 YVDDVSRFVWNFLADRTSTP 184
+ ++ +R V N +AD P
Sbjct: 372 FKEEEARIVGNLIADVLDNP 391
>sp|P23001|FLAV_AZOCH Flavodoxin-B OS=Azotobacter chroococcum mcd 1 GN=nifF PE=1 SV=3
Length = 180
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 5/86 (5%)
Query: 174 WNFLADRTSTPKENASSSCSKDCTNED-EHFLPSLNVANHRYVLAYSTRLMFESGTWNVL 232
+ FL T T E S DC NE E FLP + + + T +F G
Sbjct: 48 YQFLILGTPTLGEGELPGLSSDCENESWEEFLPKIEGLD----FSGKTVALFGLGDQVGY 103
Query: 233 PPNSSDSMGSVDPVSTESNWNTIGLW 258
P N D+MG + TE +G W
Sbjct: 104 PENFLDAMGELHSFFTERGAKVVGAW 129
>sp|Q54JT7|NICA_DICDI Nicastrin OS=Dictyostelium discoideum GN=ncstn PE=3 SV=2
Length = 659
Score = 33.9 bits (76), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 54/275 (19%), Positives = 115/275 (41%), Gaps = 45/275 (16%)
Query: 46 SPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVA--AASL 103
S SF+ +N NF LV+ D D + N ++ D+ NIN++ + +
Sbjct: 406 SSMSFIKEINKKSAPNFIGTLVIT--DHDYQYNNPYFGDEQDNSGNINTTTSTLFDMVQV 463
Query: 104 IARSLYILASDNNDMHSSVLGAINVNTSLVEELMGCL---LSCEPDLHYVGVVVGEPSFK 160
++S+ +LA N G + V+ + E+ CL ++C ++V ++ +
Sbjct: 464 FSKSIDLLAGGN--------GTVKVDDLFIREINVCLTQSITC----NWVTKLMSTFPYN 511
Query: 161 PYLGYVDDV-------------SRFVWNFLADRTSTPKENASSSCS-KDCTNEDEHFLPS 206
P + V +RF++ +A + + NA++ S DC +
Sbjct: 512 PIPNFYSGVYGVSPVNHITPIETRFIFR-MATYLTQHRTNATNCTSDNDCDTSSSICVNK 570
Query: 207 LNV-ANHRYVLAYSTRLMFES--GTWNVLPPNSSDSMGSVDPVSTESNWNTIGLWVYTIQ 263
+ + +N Y A S F++ +W ++ + PV ESNW+ + ++ +
Sbjct: 571 VCLYSNTHYHNAISLAFSFDNSKSSWTIV--------NTSYPVFVESNWDYTTVRLFQVG 622
Query: 264 NGAYDHLILIGGIAVTISAYFMIALARSFITKALK 298
+ A + L+ G+ + + +I + +++K K
Sbjct: 623 SYANEIWFLVSGLIELLLSVGIIFYIKKYLSKRYK 657
>sp|P31466|PURP_ECOLI Probable adenine permease PurP OS=Escherichia coli (strain K12)
GN=purP PE=1 SV=2
Length = 445
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 10/63 (15%)
Query: 110 ILASDNNDMHSSVLGAINVNTSLVEELMGCLLSCEPDLHYVGVVVGEPSFKPYLGYVDDV 169
ILAS N +H++VL +I V T L+G +L D+HY G+V PS +G+VD
Sbjct: 197 ILASRN--IHAAVLVSIVVTT-----LLGWMLG---DVHYNGIVSAPPSVMTVVGHVDLA 246
Query: 170 SRF 172
F
Sbjct: 247 GSF 249
>sp|Q6ZS30|NBEL1_HUMAN Neurobeachin-like protein 1 OS=Homo sapiens GN=NBEAL1 PE=2 SV=3
Length = 2694
Score = 32.3 bits (72), Expect = 4.7, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 11/70 (15%)
Query: 162 YLGYVDDVSRFVWNFLADRTST-PKENASSSCSKDCTNEDEHFLPSLNVANHRYVLAYST 220
+L Y ++S + + F+ D+T T PK S + S F P L + + +V+++
Sbjct: 2361 WLPYDRNISNY-FTFIKDQTVTNPKTQRSINGS---------FAPGLEITSKLFVVSHDA 2410
Query: 221 RLMFESGTWN 230
+L+F +G W+
Sbjct: 2411 KLLFSAGYWD 2420
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 106,912,962
Number of Sequences: 539616
Number of extensions: 4314170
Number of successful extensions: 9153
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 9146
Number of HSP's gapped (non-prelim): 18
length of query: 300
length of database: 191,569,459
effective HSP length: 117
effective length of query: 183
effective length of database: 128,434,387
effective search space: 23503492821
effective search space used: 23503492821
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)