Query 044152
Match_columns 300
No_of_seqs 95 out of 104
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 20:48:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044152.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044152hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tkj_A Aminopeptidase, SGAP; d 96.2 0.011 3.6E-07 53.9 7.8 64 45-115 200-279 (284)
2 1rtq_A Bacterial leucyl aminop 96.0 0.013 4.4E-07 53.6 7.1 64 45-115 225-290 (299)
3 4fuu_A Leucine aminopeptidase; 95.6 0.021 7.2E-07 52.7 6.9 60 45-110 246-307 (309)
4 2ek8_A Aminopeptidase; metallo 95.3 0.026 9E-07 54.1 6.7 59 47-115 345-403 (421)
5 4f9u_A CG32412; alpha/beta hyd 95.3 0.037 1.2E-06 50.9 7.2 61 44-114 240-300 (312)
6 3tc8_A Leucine aminopeptidase; 94.3 0.077 2.6E-06 49.3 6.7 62 43-110 244-308 (309)
7 2afw_A Glutaminyl-peptide cycl 93.7 0.11 3.6E-06 48.4 6.5 55 48-112 273-327 (329)
8 3gux_A Putative Zn-dependent e 93.4 0.083 2.8E-06 49.3 5.3 62 43-110 247-312 (314)
9 3iib_A Peptidase M28; YP_92679 93.0 0.19 6.4E-06 48.8 7.2 62 48-117 375-436 (444)
10 4fai_A CG5976, isoform B; alph 92.9 0.17 5.9E-06 47.1 6.7 56 48-113 269-324 (330)
11 3pb6_X Glutaminyl-peptide cycl 89.7 0.77 2.6E-05 43.1 7.5 61 42-112 268-328 (330)
12 3kas_A Transferrin receptor pr 82.3 1.2 4.1E-05 45.6 4.8 65 44-115 414-485 (640)
13 3fed_A Glutamate carboxypeptid 65.6 4.8 0.00016 41.7 4.3 60 48-115 476-548 (707)
14 3k9t_A Putative peptidase; str 61.4 11 0.00038 36.9 5.8 49 59-115 309-357 (435)
15 2f95_B Sensory rhodopsin II tr 32.1 23 0.00077 27.7 2.2 30 270-299 60-89 (163)
16 3fxd_A Protein ICMQ; helix bun 22.6 17 0.00058 26.0 -0.1 15 10-24 30-44 (57)
17 1pi7_A VPU protein, U ORF prot 21.9 1.4E+02 0.0048 19.2 4.2 17 272-288 7-23 (36)
18 2lx0_A Membrane fusion protein 21.3 94 0.0032 19.1 3.0 29 268-296 4-32 (32)
No 1
>1tkj_A Aminopeptidase, SGAP; double-zinc metalloproteinase, calcium activation, protein- inhibitor complex, hydrolase; HET: MED; 1.15A {Streptomyces griseus} SCOP: c.56.5.4 PDB: 1f2o_A 1f2p_A* 1cp7_A 1qq9_A* 1tf9_A* 1tf8_A* 1tkh_A* 1tkf_A* 1xbu_A* 1xjo_A
Probab=96.24 E-value=0.011 Score=53.87 Aligned_cols=64 Identities=19% Similarity=0.126 Sum_probs=52.0
Q ss_pred CCCccHHHHhhccCCCCcceEEEEEeccCC----------------ccccccccccccccccccCHHHHHHHHHHHHHHH
Q 044152 45 ISPTSFMYWVNHFQFSNFFYVLVLISEDFD----------------IAFTNKFYHSHLDDMANINSSAAVAAASLIARSL 108 (300)
Q Consensus 45 LPPSSl~SFLr~~~i~g~~~~~~vVltd~d----------------~~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsL 108 (300)
...|...+|.+ .+||+ +.+.... ..+.+++||+..|+.+++|.+.+.+++.++++.+
T Consensus 200 ~~~sD~~~f~~-~Gip~------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~yHt~~D~~~~id~~~l~~~~~~~~~~~ 272 (284)
T 1tkj_A 200 DGRSDHAPFKN-VGVPV------GGLFTGAGYTKSAAQAQKWGGTAGQAFDRCYHSSCDSLSNINDTALDRNSDAAAHAI 272 (284)
T ss_dssp TTCSTHHHHHH-TTCCE------EEEECCCSSBCCHHHHHHHCSCTTSBSCTTTTSTTCSTTSCCHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHH-CCCCE------EEeecCcccccccchhhccccccccCCCCCCCCCcCChhhCCHHHHHHHHHHHHHHH
Confidence 34577888986 89999 7776542 1344799999999999999999999999999999
Q ss_pred HHHHcCC
Q 044152 109 YILASDN 115 (300)
Q Consensus 109 y~lA~g~ 115 (300)
+.||.++
T Consensus 273 ~~la~~~ 279 (284)
T 1tkj_A 273 WTLSSGT 279 (284)
T ss_dssp HHHHC--
T ss_pred HHHhcCC
Confidence 9999765
No 2
>1rtq_A Bacterial leucyl aminopeptidase; bimetallic, zinc, high resolution, hydrolase; 0.95A {Vibrio proteolyticus} SCOP: c.56.5.4 PDB: 1txr_A* 1xry_A* 2dea_A 2nyq_A 3fh4_A 3vh9_A* 1lok_A 1cp6_A 1ft7_A* 1igb_A* 1amp_A 2iq6_A 2prq_A 3b3v_A 3b3w_A 3b7i_A* 3b3t_A 3b35_A 3b3c_A* 3b3s_A ...
Probab=95.99 E-value=0.013 Score=53.62 Aligned_cols=64 Identities=17% Similarity=0.124 Sum_probs=52.0
Q ss_pred CCCccHHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCH--HHHHHHHHHHHHHHHHHHcCC
Q 044152 45 ISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINS--SAAVAAASLIARSLYILASDN 115 (300)
Q Consensus 45 LPPSSl~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~--~~i~~vAt~vArsLy~lA~g~ 115 (300)
...|...+|.+ .+||+ +.+......--++|||+..|+.+++|. +.+.+++.++++.+++||..+
T Consensus 225 ~~~sD~~~f~~-~GiP~------~~~~~~~~~~~~~~yHt~~Dt~~~~d~~~~~~~~~~~l~~~~~~~La~~~ 290 (299)
T 1rtq_A 225 YACSDHASWHN-AGYPA------AMPFESKFNDYNPRIHTTQDTLANSDPTGSHAKKFTQLGLAYAIEMGSAT 290 (299)
T ss_dssp SCCSTHHHHHH-TTCCE------ECEESSCGGGSCTTTTSTTCCGGGSCTTCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCcHHHHHH-CCCCE------EEecccccccCCCCCCCccccccccCccHHHHHHHHHHHHHHHHHHhCCC
Confidence 35677889976 78999 877664332236999999999999996 688999999999999999765
No 3
>4fuu_A Leucine aminopeptidase; phosphorylase/hydrolase like fold, peptidase family M28, STR genomics, joint center for structural genomics; 1.30A {Bacteroides thetaiotaomicron}
Probab=95.61 E-value=0.021 Score=52.66 Aligned_cols=60 Identities=13% Similarity=0.029 Sum_probs=45.4
Q ss_pred CCCccHHH-HhhccCCCCcceEEEEEeccCCcc-ccccccccccccccccCHHHHHHHHHHHHHHHHH
Q 044152 45 ISPTSFMY-WVNHFQFSNFFYVLVLISEDFDIA-FTNKFYHSHLDDMANINSSAAVAAASLIARSLYI 110 (300)
Q Consensus 45 LPPSSl~S-FLr~~~i~g~~~~~~vVltd~d~~-F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~ 110 (300)
..++|=+. |.+..+||+ +=+.+++.. --+++||+..|+.++||.+.|..++.+|...||.
T Consensus 246 ~~~~sDh~~F~~~~GIP~------l~~~~~~~~~~~~~~yHT~~Dt~d~id~~~L~~vg~~vl~~ly~ 307 (309)
T 4fuu_A 246 DTITDDHLFINRLARIKT------IDIIPNDPETGFPPTWHTIHDNMDHIDKNTLKAVGQTVLEVIYN 307 (309)
T ss_dssp CCCCCHHHHHHHHTCCCE------EEECBC----CCCTTTTSTTCSGGGBCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCChHHHHhcCCCCE------EEEeccCCCCCCCCCCCCcccchhhCCHHHHHHHHHHHHHHHhh
Confidence 34566554 445589999 877665532 2367999999999999999999999999998885
No 4
>2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A*
Probab=95.31 E-value=0.026 Score=54.13 Aligned_cols=59 Identities=12% Similarity=0.206 Sum_probs=50.5
Q ss_pred CccHHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCHHHHHHHHHHHHHHHHHHHcCC
Q 044152 47 PTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASDN 115 (300)
Q Consensus 47 PSSl~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~lA~g~ 115 (300)
.|-..+|.+ .+||+ +.+++.. .+++||+..|+.+++|.+.+.+++.+++..++.+|..+
T Consensus 345 ~SD~~~F~~-~GIP~------~~~~~~~---~~~~yHt~~Dt~~~i~~~~l~~~~~~~~~~~~~la~~~ 403 (421)
T 2ek8_A 345 RSDHESFHA-LGIPA------ALFIHAP---VEPWYHTPNDTLDKISKEKLDNVADIVGSAVYQAARPG 403 (421)
T ss_dssp SSTHHHHHT-TTCCE------EEEEEES---CCTTTTSTTCCGGGBCHHHHHHHHHHHHHHHHHHHSSS
T ss_pred CCccHHHHH-CCCCE------EEEECCc---CCCCCCCcccchhhCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456788986 89999 7776322 46899999999999999999999999999999999765
No 5
>4f9u_A CG32412; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, glycosylation, transferase, HY; HET: PBD NAG BMA MAN; 1.80A {Drosophila melanogaster} PDB: 4f9v_A*
Probab=95.26 E-value=0.037 Score=50.87 Aligned_cols=61 Identities=11% Similarity=0.103 Sum_probs=50.7
Q ss_pred CCCCccHHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCHHHHHHHHHHHHHHHHHHHcC
Q 044152 44 FISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASD 114 (300)
Q Consensus 44 ~LPPSSl~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~lA~g 114 (300)
+...|--..|++ .+||+ +=+.+.+ | +++||+..|+.++||.+.|.+++.+++..+|++...
T Consensus 240 ~~~~SDH~pF~~-~GIP~------l~~~~~~--~-~~~yHt~~Dt~d~id~~~l~~~~~i~~~fv~e~l~~ 300 (312)
T 4f9u_A 240 GLVDDDHRPFLD-ENVPV------LHLVATP--F-PDVWHTPRDNAANLHWPSIRNFNRVFRNFVYQYLKR 300 (312)
T ss_dssp SCCCCTTHHHHT-TTCCE------EEEECSS--C-CTTTTSTTCSGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHH-CCCCE------EEEECCC--C-CCCCCCCccChhhCCHHHHHHHHHHHHHHHHHHHhC
Confidence 344566778887 68999 7777655 2 578999999999999999999999999999988754
No 6
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}
Probab=94.26 E-value=0.077 Score=49.28 Aligned_cols=62 Identities=16% Similarity=0.215 Sum_probs=50.8
Q ss_pred CCCCCccHHHHhhccCCCCcceEEEEEeccCCc---cccccccccccccccccCHHHHHHHHHHHHHHHHH
Q 044152 43 IFISPTSFMYWVNHFQFSNFFYVLVLISEDFDI---AFTNKFYHSHLDDMANINSSAAVAAASLIARSLYI 110 (300)
Q Consensus 43 ~~LPPSSl~SFLr~~~i~g~~~~~~vVltd~d~---~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~ 110 (300)
.+.-+|--.+|.+.++||+ +-+.+++. ..-+++||+..|+.++||...|.+++.+++..||.
T Consensus 244 ~g~~~sDh~~f~~~~GiP~------~~li~~~~~~~~~~~~~~Ht~~Dt~d~id~~~l~~~~~~~~~~vy~ 308 (309)
T 3tc8_A 244 GGAITDDHQYVISGRNIPS------IDIINYDPESKTGFASYWHTQKDNMENIDRETLKAAGQTVLEVIYN 308 (309)
T ss_dssp CCCCCCHHHHHHHHHCCCE------EEEEBCCTTSSSSSCTTTTSTTCSGGGBCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCccHHHHhcCCCCE------EEEecccCcccCCCCCCCCCCcCChhhCCHHHHHHHHHHHHHHHhc
Confidence 3445677788888789999 88766632 12358999999999999999999999999999985
No 7
>2afw_A Glutaminyl-peptide cyclotransferase; alpha-beta protein, metalloprotein; HET: AHN; 1.56A {Homo sapiens} SCOP: c.56.5.8 PDB: 2afo_A 2afm_A* 2afx_A* 2afz_A 3pbb_A* 2zed_A 2zeh_A 2afu_A 2zee_A 2zeo_A 2zef_A 2zem_A 2zel_A 2zen_A 3pbe_A 2zeg_A 2zep_A 2afs_A 3si0_A* 3si2_A* ...
Probab=93.69 E-value=0.11 Score=48.39 Aligned_cols=55 Identities=9% Similarity=0.066 Sum_probs=47.2
Q ss_pred ccHHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Q 044152 48 TSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILA 112 (300)
Q Consensus 48 SSl~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~lA 112 (300)
|--.+|+++ +||+ +-+.+.+ ..++||+..|+.+++|.+.+.+++.+++..++++.
T Consensus 273 sDh~~F~~~-GiP~------~~~~~~~---~~~~yHt~~Dt~~~ld~~~l~~~~~~~~~~v~eyl 327 (329)
T 2afw_A 273 DDHIPFLRR-GVPV------LHLIPSP---FPEVWHTMDDNEENLDESTIDNLNKILQVFVLEYL 327 (329)
T ss_dssp STTHHHHTT-TCCE------EEECCSS---CCTTTTSTTCSSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHhHHHC-CCCE------EEEEcCC---CCCCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHh
Confidence 557789984 9999 8887654 24899999999999999999999999999998865
No 8
>3gux_A Putative Zn-dependent exopeptidase; aminopeptidase, phosphorylase/hydrolase-like fold, structura genomics; 1.80A {Bacteroides vulgatus atcc 8482}
Probab=93.43 E-value=0.083 Score=49.34 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=38.3
Q ss_pred CCCCCccHHHHhhccCCCCcceEEEEEeccCC---c-cccccccccccccccccCHHHHHHHHHHHHHHHHH
Q 044152 43 IFISPTSFMYWVNHFQFSNFFYVLVLISEDFD---I-AFTNKFYHSHLDDMANINSSAAVAAASLIARSLYI 110 (300)
Q Consensus 43 ~~LPPSSl~SFLr~~~i~g~~~~~~vVltd~d---~-~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~ 110 (300)
.+..+|--.+|+++++||+ +-+.+++ . ..-+++||+..|+.++||...|.+++.+++..||.
T Consensus 247 ~~~~~sDh~pF~~~~GiP~------l~~i~~~~~~~~~~f~~~~Ht~~Dt~d~id~~~l~~~~~~~~~~~y~ 312 (314)
T 3gux_A 247 GGETVDDHIYVNKLARIPC------VDIINYDAGNPQSSFGSFWHTVNDTMENIDRNTLKAVGQTVMDVIYN 312 (314)
T ss_dssp CCCCCCHHHHHHHHSCCCE------EEEEBCC--------------------CBCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCccHHHHhcCCCce------EEEecccccccccCCCCCCCCCcCcchhCCHHHHHHHHHHHHHHHhh
Confidence 3455677888888789999 8776663 1 22357999999999999999999999999999885
No 9
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Probab=92.99 E-value=0.19 Score=48.84 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=50.0
Q ss_pred ccHHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCHHHHHHHHHHHHHHHHHHHcCCCC
Q 044152 48 TSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASDNND 117 (300)
Q Consensus 48 SSl~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~lA~g~~~ 117 (300)
|-...|.+ .+||+ +-+...+.. -+++||+..|+.++||.+.|..++.+++..++.+|..+..
T Consensus 375 SD~~~f~~-~GiP~------~~l~~~~~~-~~~~yHt~~Dt~d~id~~~l~~~~~~~~~~v~~lA~~~~~ 436 (444)
T 3iib_A 375 PDVSMLPA-LGVPV------ASLRQDGSD-YFDYHHTPNDTLDKINPEALAQNVAVYAQFAWVMANSKVE 436 (444)
T ss_dssp GGGTTSGG-GTCCE------EEEEECCTT-GGGTTTSTTCCGGGSCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred CccHHHHH-CCCCE------EEeecCCCc-CCCCCCCCccccccCCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44666765 78999 666543322 3579999999999999999999999999999999987655
No 10
>4fai_A CG5976, isoform B; alpha/beta hydrolase, PGlu formation, PE, alzheimer'S diseas pyroglutamate, PGlu-amyloid, transferase, hydrolase; HET: PBD; 1.65A {Drosophila melanogaster} PDB: 4fbe_A*
Probab=92.91 E-value=0.17 Score=47.13 Aligned_cols=56 Identities=13% Similarity=0.067 Sum_probs=45.6
Q ss_pred ccHHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCHHHHHHHHHHHHHHHHHHHc
Q 044152 48 TSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILAS 113 (300)
Q Consensus 48 SSl~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~lA~ 113 (300)
|--..|++ .+||+ +=+.+.+ | +++||+..|+.++||...|.+++.+++..+++..-
T Consensus 269 SDH~pF~~-~GIP~------l~~i~~~--~-~~~yHT~~Dt~d~iD~~tl~~~~~ii~~Fv~EyL~ 324 (330)
T 4fai_A 269 DDHIPFLR-RNVPI------LHLIPVP--F-PSVWHTPDDNASVIDYATTDNLALIIRLFALEYLL 324 (330)
T ss_dssp STTHHHHT-TTCCE------EEECCSS--C-CTTTTSTTSSGGGCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CchHHHHH-CCCCE------EEEECCC--C-CCCCCCCcCChhhCCHHHHHHHHHHHHHHHHHHHh
Confidence 45667888 78999 7776554 2 57999999999999999999999999888876443
No 11
>3pb6_X Glutaminyl-peptide cyclotransferase-like protein; alpha/beta protein, alpha/beta-mixed fold, glutaminyl cyclas membrane; 1.05A {Homo sapiens} PDB: 3pb4_X 3pb7_X* 3pb8_X* 3pb9_X*
Probab=89.68 E-value=0.77 Score=43.15 Aligned_cols=61 Identities=11% Similarity=0.068 Sum_probs=50.8
Q ss_pred CCCCCCccHHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCHHHHHHHHHHHHHHHHHHH
Q 044152 42 AIFISPTSFMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILA 112 (300)
Q Consensus 42 ~~~LPPSSl~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~lA 112 (300)
..+...|--.+|++ ++||+ +=+.+.+ | .++||+.-|+.++||.+.|.+++.+++..++++.
T Consensus 268 ~~~~~~SDH~pF~~-~GIP~------~~~~~~~--f-~~~yHt~~Dt~d~id~~~l~~~~~i~~~fv~Eyl 328 (330)
T 3pb6_X 268 PFGSVEDDHIPFLR-RGVPV------LHLISTP--F-PAVWHTPADTEVNLHPPTVHNLCRILAVFLAEYL 328 (330)
T ss_dssp SSCCCSCTTHHHHT-TTCCE------EEEECSS--C-CTTTTSTTCSGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCchHhHHH-CCCCE------EEEEcCC--C-CCCCCCCcCchhhCCHHHHHHHHHHHHHHHHHHh
Confidence 34556677889998 99999 7776543 3 2799999999999999999999999999998764
No 12
>3kas_A Transferrin receptor protein 1; transferrin receptor 1, arenavirus, cell MEMB disulfide bond, endocytosis, HOST-virus inter receptor, secreted, transmembrane; HET: NAG FUC BMA MAN; 2.40A {Homo sapiens} PDB: 1de4_C* 3s9l_A* 3s9m_A* 3s9n_A* 1cx8_A* 1suv_A 2nsu_A
Probab=82.26 E-value=1.2 Score=45.65 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=47.3
Q ss_pred CCCCcc-HHHHhhccCCCCcceEEEEEeccCCccccccccccccccccccCH------HHHHHHHHHHHHHHHHHHcCC
Q 044152 44 FISPTS-FMYWVNHFQFSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINS------SAAVAAASLIARSLYILASDN 115 (300)
Q Consensus 44 ~LPPSS-l~SFLr~~~i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~------~~i~~vAt~vArsLy~lA~g~ 115 (300)
++|..| ...|++..+||+ +-+. |...-...+|||.+|+.++++. +...++|.+++..+++||-..
T Consensus 414 ~~~~~sD~~~F~~~~GIP~------~~~~-~~~~~~y~~yHT~~Dt~~~i~~~~~~~~~~h~~~a~~~g~l~l~La~~~ 485 (640)
T 3kas_A 414 KLTLDNAAFPFLAYSGIPA------VSFC-FCEDTDYPYLGTTMDTYKELIERIPELNKVARAAAEVAGQFVIKLTHDV 485 (640)
T ss_dssp CCCTTSTHHHHHHHHCCCE------EEEE-EECSSCCTTTTSTTCCHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCcchHHHHHhCCCCe------eecc-ccCCCCCCCcCCccccHHHHHhhcCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 344444 667887789999 7765 2211013589999999988763 567889999999999999765
No 13
>3fed_A Glutamate carboxypeptidase III; metallopeptidase, bimetallic active site, N-glycosylation, C cation, chloride anion, zinc IONS, dipept glycoprotein; HET: NAG BIX; 1.29A {Homo sapiens} PDB: 3fec_A* 3fee_A* 3ff3_A* 2c6c_A* 2c6g_A* 2c6p_A* 2cij_A* 2jbj_A* 2jbk_A* 3rbu_A* 3bi1_A* 2oot_A* 2pvv_A* 2pvw_A* 2xei_A* 2or4_A* 3bi0_A* 3bhx_A* 3d7d_A* 3d7f_A* ...
Probab=65.55 E-value=4.8 Score=41.68 Aligned_cols=60 Identities=12% Similarity=0.226 Sum_probs=44.9
Q ss_pred ccHHHHhhccCCCCcceEEEEEeccCCc-------cccccccccccccccccC------HHHHHHHHHHHHHHHHHHHcC
Q 044152 48 TSFMYWVNHFQFSNFFYVLVLISEDFDI-------AFTNKFYHSHLDDMANIN------SSAAVAAASLIARSLYILASD 114 (300)
Q Consensus 48 SSl~SFLr~~~i~g~~~~~~vVltd~d~-------~F~Nk~Y~S~lD~~~ni~------~~~i~~vAt~vArsLy~lA~g 114 (300)
|-+..|+...+||+ +-+.-... .| ..|||.||+.++++ -..-.++|.+++..+++||-.
T Consensus 476 SD~~~F~~~~GIPs------~~~~f~~~~~~~~~~~y--~~YHT~~Dt~~~~~~~~Dp~f~~h~~~a~~~g~l~l~La~~ 547 (707)
T 3fed_A 476 SDFEAYFQRLGIAS------GRARYTKNKKTDKYSSY--PVYHTIYETFELVEKFYDPTFKKQLSVAQLRGALVYELVDS 547 (707)
T ss_dssp STTHHHHHTTCCCE------EEEEEECCTTTCCSSSC--TTTTSTTCCHHHHHHHTCTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred CChHHHHHhCCcce------eccccccCccccccCCC--CCcCCCcccHHHHHHhcCchHHHHHHHHHHHHHHHHHHhCC
Confidence 45778888789999 76643211 22 57999999988764 356677899999999999975
Q ss_pred C
Q 044152 115 N 115 (300)
Q Consensus 115 ~ 115 (300)
.
T Consensus 548 ~ 548 (707)
T 3fed_A 548 K 548 (707)
T ss_dssp S
T ss_pred c
Confidence 4
No 14
>3k9t_A Putative peptidase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, aminop hydrolase; 2.37A {Clostridium acetobutylicum}
Probab=61.44 E-value=11 Score=36.95 Aligned_cols=49 Identities=12% Similarity=0.175 Sum_probs=38.9
Q ss_pred CCCcceEEEEEeccCCccccccccccccccccccCHHHHHHHHHHHHHHHHHHHcCC
Q 044152 59 FSNFFYVLVLISEDFDIAFTNKFYHSHLDDMANINSSAAVAAASLIARSLYILASDN 115 (300)
Q Consensus 59 i~g~~~~~~vVltd~d~~F~Nk~Y~S~lD~~~ni~~~~i~~vAt~vArsLy~lA~g~ 115 (300)
||. +-+..- .|-.++||+..|+.+.|+.+.|..++.++.+++-.|=.+.
T Consensus 309 IPv------~~~~r~--~~~~peYHTs~Dtld~ISpe~L~~s~~iv~~~i~~Le~n~ 357 (435)
T 3k9t_A 309 LSV------GSLMRS--CYGFDGYHTSADNLCYMNKDGLADSYKTYLEVIYTIENNR 357 (435)
T ss_dssp CCE------EEEESS--CTTCTTTTBTTSSGGGCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCE------EEEecC--CCCCcccCCCcCChhhCCHHHHHHHHHHHHHHHHHhhccc
Confidence 777 554442 2225789999999999999999999999999997776553
No 15
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=32.10 E-value=23 Score=27.68 Aligned_cols=30 Identities=20% Similarity=-0.011 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044152 270 LILIGGIAVTISAYFMIALARSFITKALKR 299 (300)
Q Consensus 270 ~~L~~Gi~v~ilS~~~i~~i~~~~~k~~k~ 299 (300)
.+++++++.+++++++.+++.+.+.|.+++
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~i~~pl~~ 89 (163)
T 2f95_B 60 AILGLIILLGINLGLVAATLGGDTAASLST 89 (163)
T ss_dssp HHHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666777777777777776654
No 16
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=22.63 E-value=17 Score=25.97 Aligned_cols=15 Identities=40% Similarity=0.612 Sum_probs=13.1
Q ss_pred HHHHHhhcCchhhcc
Q 044152 10 AFIISIGRSLDSIVD 24 (300)
Q Consensus 10 ~~~~~~~~~~~~~~~ 24 (300)
.|||.||++|.+|-|
T Consensus 30 NFLRvIGKnL~eIRd 44 (57)
T 3fxd_A 30 NFLRVIGKKLIAIRD 44 (57)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHH
Confidence 489999999999865
No 17
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=21.90 E-value=1.4e+02 Score=19.24 Aligned_cols=17 Identities=18% Similarity=0.122 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 044152 272 LIGGIAVTISAYFMIAL 288 (300)
Q Consensus 272 L~~Gi~v~ilS~~~i~~ 288 (300)
.++|++++++-.+++|-
T Consensus 7 ~ivalivalIiaIVVWt 23 (36)
T 1pi7_A 7 AIVALVVAIIIAIVVWS 23 (36)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555554444444443
No 18
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=21.34 E-value=94 Score=19.15 Aligned_cols=29 Identities=10% Similarity=0.108 Sum_probs=18.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044152 268 DHLILIGGIAVTISAYFMIALARSFITKA 296 (300)
Q Consensus 268 e~~~L~~Gi~v~ilS~~~i~~i~~~~~k~ 296 (300)
.++-.+.|++.++--+..-|++-.|+.|+
T Consensus 4 tiweviaglvalltflafgfwlfkylqkk 32 (32)
T 2lx0_A 4 TIWEVIAGLVALLTFLAFGFWLFKYLQKK 32 (32)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566778776555555567777777663
Done!