Query 044153
Match_columns 262
No_of_seqs 161 out of 1773
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 11:55:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044153.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044153hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02878 homogentisate phytylt 100.0 4.9E-52 1.1E-56 362.5 25.3 259 4-262 1-267 (280)
2 PRK12887 ubiA tocopherol phyty 100.0 1.3E-44 2.8E-49 325.0 27.0 236 24-262 51-293 (308)
3 PRK12895 ubiA prenyltransferas 100.0 1.4E-33 3E-38 250.5 21.5 215 28-258 39-263 (286)
4 PRK12888 ubiA prenyltransferas 100.0 1.2E-32 2.6E-37 245.1 23.9 216 27-257 40-263 (284)
5 PLN02809 4-hydroxybenzoate non 100.0 1.7E-32 3.8E-37 244.3 24.1 215 28-258 47-269 (289)
6 TIGR01475 ubiA_other putative 100.0 1.6E-32 3.6E-37 244.4 23.5 217 27-258 37-263 (282)
7 COG0382 UbiA 4-hydroxybenzoate 100.0 4E-32 8.6E-37 242.7 24.2 221 25-260 46-273 (289)
8 PRK12876 ubiA prenyltransferas 100.0 5.5E-32 1.2E-36 240.6 24.4 221 25-259 46-280 (300)
9 PRK12882 ubiA prenyltransferas 100.0 3.6E-32 7.7E-37 241.6 23.2 217 28-259 40-263 (276)
10 TIGR01476 chlor_syn_BchG bacte 100.0 2.7E-31 5.8E-36 236.7 25.9 178 28-213 40-223 (283)
11 PRK12870 ubiA 4-hydroxybenzoat 100.0 8.6E-32 1.9E-36 240.4 22.5 216 28-259 48-272 (290)
12 PRK09573 (S)-2,3-di-O-geranylg 100.0 1.3E-31 2.7E-36 238.4 23.2 216 27-256 38-257 (279)
13 PRK12884 ubiA prenyltransferas 100.0 2.4E-31 5.1E-36 236.6 24.7 217 26-256 37-258 (279)
14 PRK12886 ubiA prenyltransferas 100.0 3.3E-31 7.2E-36 236.7 25.6 218 27-259 43-268 (291)
15 PRK13106 ubiA prenyltransferas 100.0 3.1E-31 6.7E-36 237.2 24.2 217 28-257 51-277 (300)
16 PRK12847 ubiA 4-hydroxybenzoat 100.0 3.6E-31 7.7E-36 236.1 24.4 219 25-259 44-269 (285)
17 PRK12874 ubiA prenyltransferas 100.0 4.3E-31 9.4E-36 235.8 24.8 218 26-258 47-271 (291)
18 TIGR01474 ubiA_proteo 4-hydrox 100.0 4.5E-31 9.8E-36 234.9 24.2 216 28-259 42-264 (281)
19 PRK12392 bacteriochlorophyll c 100.0 1E-30 2.2E-35 236.7 25.9 186 29-221 53-250 (331)
20 PRK12848 ubiA 4-hydroxybenzoat 100.0 7E-31 1.5E-35 233.9 24.2 215 28-258 44-265 (282)
21 PRK12878 ubiA 4-hydroxybenzoat 100.0 1E-30 2.2E-35 235.6 24.0 217 27-259 73-296 (314)
22 PRK07566 bacteriochlorophyll/c 100.0 1.2E-30 2.6E-35 235.5 22.7 177 29-212 68-250 (314)
23 TIGR02056 ChlG chlorophyll syn 100.0 9.5E-30 2.1E-34 228.9 24.9 224 28-259 56-295 (306)
24 PRK12873 ubiA prenyltransferas 100.0 4E-30 8.6E-35 228.7 22.1 217 26-258 44-275 (294)
25 PRK12869 ubiA protoheme IX far 100.0 2E-29 4.3E-34 224.2 26.4 217 28-258 38-263 (279)
26 PRK05951 ubiA prenyltransferas 100.0 3.1E-29 6.7E-34 224.7 26.8 240 10-258 27-277 (296)
27 PLN00012 chlorophyll synthetas 100.0 1.6E-29 3.4E-34 232.0 23.5 173 28-208 125-309 (375)
28 PRK12883 ubiA prenyltransferas 100.0 5.3E-29 1.2E-33 221.3 25.0 167 28-206 39-209 (277)
29 PRK13595 ubiA prenyltransferas 100.0 6.5E-29 1.4E-33 219.6 23.6 175 29-213 50-231 (292)
30 PRK04375 protoheme IX farnesyl 100.0 1.3E-28 2.9E-33 220.6 24.5 221 27-259 45-273 (296)
31 TIGR01473 cyoE_ctaB protoheme 100.0 1.7E-28 3.8E-33 218.3 25.0 220 26-258 35-264 (280)
32 PRK13387 1,4-dihydroxy-2-napht 100.0 1.8E-27 4E-32 214.7 26.2 204 9-222 25-260 (317)
33 PRK06080 1,4-dihydroxy-2-napht 100.0 1.9E-27 4.2E-32 212.9 25.5 189 26-222 38-239 (293)
34 PRK13362 protoheme IX farnesyl 100.0 6.6E-27 1.4E-31 210.1 24.3 169 28-206 49-225 (306)
35 PF01040 UbiA: UbiA prenyltran 100.0 2.6E-27 5.6E-32 206.9 19.2 162 28-198 25-193 (257)
36 PRK13591 ubiA prenyltransferas 100.0 1.5E-26 3.2E-31 205.5 22.9 179 32-222 64-250 (307)
37 TIGR00751 menA 1,4-dihydroxy-2 100.0 7.5E-26 1.6E-30 201.3 26.1 205 9-222 15-235 (284)
38 PRK12872 ubiA prenyltransferas 100.0 1.3E-26 2.8E-31 206.6 20.6 190 28-222 38-232 (285)
39 PRK12871 ubiA prenyltransferas 99.9 1.5E-25 3.2E-30 200.6 26.0 212 29-258 44-278 (297)
40 PRK07419 1,4-dihydroxy-2-napht 99.9 6.9E-25 1.5E-29 196.6 25.4 204 10-224 35-247 (304)
41 PLN02922 prenyltransferase 99.9 1.7E-24 3.7E-29 195.0 25.5 203 9-222 37-259 (315)
42 TIGR02235 menA_cyano-plnt 1,4- 99.9 2E-24 4.3E-29 192.3 25.6 204 9-224 21-234 (285)
43 KOG1381 Para-hydroxybenzoate-p 99.9 1.8E-26 3.8E-31 197.6 11.1 232 6-258 87-327 (353)
44 PRK13592 ubiA prenyltransferas 99.9 5E-25 1.1E-29 194.2 19.3 177 25-214 45-236 (299)
45 PLN02776 prenyltransferase 99.9 1.8E-23 4E-28 188.8 25.5 217 27-258 30-257 (341)
46 PRK13105 ubiA prenyltransferas 99.9 2E-23 4.4E-28 185.1 23.9 167 38-213 46-222 (282)
47 PRK12875 ubiA prenyltransferas 99.9 2.8E-22 6.1E-27 178.1 25.0 167 38-215 57-229 (282)
48 COG1575 MenA 1,4-dihydroxy-2-n 99.9 5.6E-22 1.2E-26 174.9 24.0 204 8-223 29-248 (303)
49 COG0109 CyoE Polyprenyltransfe 99.9 2.1E-22 4.6E-27 177.1 19.0 219 25-259 51-281 (304)
50 PRK12324 phosphoribose diphosp 99.8 1.4E-18 3.1E-23 155.0 21.1 112 24-141 44-157 (295)
51 PRK08238 hypothetical protein; 99.8 4E-18 8.6E-23 161.6 23.1 152 21-184 221-377 (479)
52 KOG1380 Heme A farnesyltransfe 99.1 1.7E-10 3.7E-15 102.0 8.2 168 27-208 128-309 (409)
53 KOG4581 Predicted membrane pro 98.9 1E-09 2.2E-14 93.0 3.3 181 30-216 103-294 (359)
54 PRK13591 ubiA prenyltransferas 94.2 0.3 6.5E-06 44.1 8.7 66 44-112 197-271 (307)
55 PRK12872 ubiA prenyltransferas 93.9 0.26 5.7E-06 43.7 7.7 32 36-67 171-203 (285)
56 COG1575 MenA 1,4-dihydroxy-2-n 93.7 0.28 6E-06 44.1 7.4 46 28-75 178-223 (303)
57 PRK13387 1,4-dihydroxy-2-napht 91.4 1.6 3.4E-05 39.7 9.3 49 30-81 193-242 (317)
58 PLN00012 chlorophyll synthetas 90.0 2.6 5.6E-05 39.3 9.5 31 37-67 263-294 (375)
59 PRK12847 ubiA 4-hydroxybenzoat 89.8 1.3 2.7E-05 39.6 7.2 36 32-67 171-207 (285)
60 PRK07419 1,4-dihydroxy-2-napht 89.7 2.7 5.9E-05 38.0 9.3 37 37-76 185-222 (304)
61 PRK12875 ubiA prenyltransferas 89.7 2.6 5.6E-05 37.7 9.0 56 33-91 172-228 (282)
62 TIGR01474 ubiA_proteo 4-hydrox 89.5 1.5 3.2E-05 39.1 7.4 36 32-67 166-202 (281)
63 PRK07566 bacteriochlorophyll/c 89.4 2.7 5.8E-05 38.1 9.1 29 38-66 201-230 (314)
64 PRK13105 ubiA prenyltransferas 89.1 3.4 7.5E-05 36.9 9.3 58 32-92 166-224 (282)
65 PRK12392 bacteriochlorophyll c 88.9 2.3 5E-05 38.9 8.3 32 35-66 189-221 (331)
66 PLN02922 prenyltransferase 88.2 3.3 7.1E-05 37.6 8.8 46 29-76 191-236 (315)
67 TIGR01475 ubiA_other putative 87.7 1.6 3.5E-05 38.8 6.4 33 34-66 166-199 (282)
68 TIGR02056 ChlG chlorophyll syn 87.5 4.6 0.0001 36.4 9.3 36 38-76 195-231 (306)
69 TIGR00751 menA 1,4-dihydroxy-2 87.2 2.2 4.7E-05 38.2 6.9 40 37-78 175-214 (284)
70 PRK12884 ubiA prenyltransferas 86.6 5 0.00011 35.5 8.9 34 34-67 163-197 (279)
71 PRK12886 ubiA prenyltransferas 85.9 3.3 7.1E-05 37.2 7.4 32 36-67 172-204 (291)
72 TIGR01476 chlor_syn_BchG bacte 85.9 5.5 0.00012 35.3 8.8 36 38-76 173-209 (283)
73 TIGR02235 menA_cyano-plnt 1,4- 85.8 5.4 0.00012 35.7 8.7 55 18-79 157-212 (285)
74 PRK12888 ubiA prenyltransferas 85.7 3.6 7.8E-05 36.8 7.5 34 34-67 167-201 (284)
75 PRK12848 ubiA 4-hydroxybenzoat 85.4 4 8.6E-05 36.3 7.7 46 18-67 158-204 (282)
76 PRK06080 1,4-dihydroxy-2-napht 85.4 5.6 0.00012 35.4 8.7 45 32-79 174-219 (293)
77 PRK12870 ubiA 4-hydroxybenzoat 83.9 4.4 9.6E-05 36.3 7.3 46 18-67 162-208 (290)
78 PRK13106 ubiA prenyltransferas 83.5 5.8 0.00013 35.8 7.9 35 32-66 183-218 (300)
79 PRK12882 ubiA prenyltransferas 83.5 8.4 0.00018 34.0 8.8 31 36-66 167-198 (276)
80 PRK12874 ubiA prenyltransferas 83.2 4.4 9.6E-05 36.3 7.0 35 33-67 174-209 (291)
81 PRK09573 (S)-2,3-di-O-geranylg 82.6 7.9 0.00017 34.3 8.3 31 36-66 164-195 (279)
82 PRK12871 ubiA prenyltransferas 82.4 12 0.00026 33.7 9.4 35 33-67 182-217 (297)
83 COG0382 UbiA 4-hydroxybenzoate 82.3 5.1 0.00011 35.7 7.0 24 170-193 66-90 (289)
84 PRK12883 ubiA prenyltransferas 81.5 8.1 0.00018 34.2 8.0 31 37-67 165-196 (277)
85 PRK12887 ubiA tocopherol phyty 79.3 13 0.00029 33.5 8.7 32 32-63 188-220 (308)
86 PRK13595 ubiA prenyltransferas 77.1 21 0.00046 32.1 9.1 29 170-199 66-97 (292)
87 PF01040 UbiA: UbiA prenyltran 75.5 15 0.00033 31.3 7.8 26 170-195 42-68 (257)
88 PRK12878 ubiA 4-hydroxybenzoat 73.8 29 0.00063 31.5 9.3 34 34-67 200-234 (314)
89 PRK12324 phosphoribose diphosp 73.4 15 0.00032 33.1 7.2 36 170-205 65-104 (295)
90 PRK13592 ubiA prenyltransferas 73.1 24 0.00052 31.9 8.4 36 170-206 65-103 (299)
91 PRK05951 ubiA prenyltransferas 73.0 26 0.00055 31.4 8.7 37 35-74 180-217 (296)
92 PF04971 Lysis_S: Lysis protei 72.8 4.2 9E-05 28.2 2.7 39 18-58 26-64 (68)
93 PLN02878 homogentisate phytylt 69.5 17 0.00036 32.6 6.5 26 167-193 38-64 (280)
94 PLN02809 4-hydroxybenzoate non 65.6 24 0.00051 31.6 6.9 24 170-193 64-88 (289)
95 COG4147 DhlC Predicted symport 62.2 34 0.00074 33.0 7.4 55 27-89 354-409 (529)
96 COG1295 Rbn Ribonuclease BN fa 60.6 1.3E+02 0.0028 27.1 13.9 32 103-135 201-234 (303)
97 TIGR01473 cyoE_ctaB protoheme 59.0 46 0.001 29.4 7.5 21 47-67 179-200 (280)
98 PRK12895 ubiA prenyltransferas 58.9 73 0.0016 28.5 8.7 32 32-63 165-197 (286)
99 PRK04375 protoheme IX farnesyl 56.3 57 0.0012 29.2 7.7 30 37-66 178-208 (296)
100 PRK12869 ubiA protoheme IX far 54.7 44 0.00095 29.6 6.6 22 45-66 178-200 (279)
101 PRK12873 ubiA prenyltransferas 54.1 62 0.0014 29.1 7.5 32 36-67 180-212 (294)
102 PRK08238 hypothetical protein; 51.8 61 0.0013 31.3 7.5 38 170-207 245-286 (479)
103 PRK12876 ubiA prenyltransferas 51.4 1.9E+02 0.0041 26.2 10.8 35 32-66 178-213 (300)
104 PRK13362 protoheme IX farnesyl 40.1 1.6E+02 0.0034 26.6 7.9 34 170-203 66-103 (306)
105 PRK10299 PhoPQ regulatory prot 37.5 46 0.001 21.3 2.8 16 40-55 19-34 (47)
106 PLN02776 prenyltransferase 35.7 3.2E+02 0.007 25.1 9.2 32 170-201 48-83 (341)
107 PRK01637 hypothetical protein; 33.7 3.3E+02 0.0073 24.0 11.7 21 34-54 105-125 (286)
108 PF04284 DUF441: Protein of un 33.2 1.9E+02 0.004 23.2 6.3 30 61-90 59-93 (140)
109 PLN02953 phosphatidate cytidyl 29.8 1.7E+02 0.0038 27.5 6.4 27 170-197 280-306 (403)
110 COG2814 AraJ Arabinose efflux 28.6 5E+02 0.011 24.4 11.5 129 64-197 71-214 (394)
111 cd00867 Trans_IPPS Trans-Isopr 26.7 35 0.00076 28.9 1.3 33 165-197 160-202 (236)
112 PF04547 Anoctamin: Calcium-ac 25.7 2.1E+02 0.0045 27.1 6.5 43 27-69 326-371 (452)
113 PF04341 DUF485: Protein of un 24.6 1.4E+02 0.003 21.7 4.1 38 20-57 52-89 (91)
114 TIGR02762 TraL_TIGR type IV co 24.1 2.9E+02 0.0064 20.2 6.3 31 54-88 7-37 (95)
115 PRK06099 F0F1 ATP synthase sub 23.2 3.7E+02 0.008 21.0 7.7 30 225-258 46-75 (126)
116 PF06738 DUF1212: Protein of u 22.7 3.7E+02 0.0081 21.9 6.8 20 92-111 124-143 (193)
117 KOG2513 Protein required for m 22.4 2.2E+02 0.0048 28.4 5.9 39 27-65 485-526 (647)
118 PRK04214 rbn ribonuclease BN/u 21.9 6.6E+02 0.014 23.5 11.6 18 36-53 115-132 (412)
119 PF00474 SSF: Sodium:solute sy 21.2 2.8E+02 0.006 25.5 6.3 19 33-51 309-327 (406)
120 PF11990 DUF3487: Protein of u 21.2 3.9E+02 0.0086 20.6 6.7 40 53-94 8-51 (121)
121 PF09928 DUF2160: Predicted sm 20.7 3.5E+02 0.0075 19.8 7.0 45 170-219 24-68 (88)
No 1
>PLN02878 homogentisate phytyltransferase
Probab=100.00 E-value=4.9e-52 Score=362.50 Aligned_cols=259 Identities=47% Similarity=0.823 Sum_probs=231.3
Q ss_pred chhhhhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHH
Q 044153 4 IDMTSVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLM 83 (262)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l 83 (262)
++.+|++.+|.+..+|+++.++++.+..++++++++.+..++|||+|+|+||+|||+||+|||++|+++++..+..+.++
T Consensus 1 l~~~~~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~l 80 (280)
T PLN02878 1 LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIM 80 (280)
T ss_pred CchhHHhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc----hhHHHH
Q 044153 84 SLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW----KTYRVF 159 (262)
Q Consensus 84 ~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~ 159 (262)
|+.+++..|++++.+....++++++.||.+.||+|+||+++.+.++.....++.+.+|+|.|.+..+++. ++..++
T Consensus 81 g~~la~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~ 160 (280)
T PLN02878 81 SFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIF 160 (280)
T ss_pred HHHHHHHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHH
Confidence 9999999998777777667778999999778999999999998888877777778889998877767763 223343
Q ss_pred HHHHHHHHH----hhhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Q 044153 160 KNIDVCSGC----QVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLA 235 (262)
Q Consensus 160 ~~~~~~~~~----~~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 235 (262)
...+...+. .+||+||+||||+.|+||+|+++|+|++.+++..++.++|+..+..+......+...++..+|.+++
T Consensus 161 ~~~f~~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~ 240 (280)
T PLN02878 161 ATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILA 240 (280)
T ss_pred HHHHHHHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 333433333 3999999999999999999999999999999999999999988888877776777888999999999
Q ss_pred HHHHHHhhcccCCChHHHHHHHHhhcC
Q 044153 236 FLLLQRARNVDVSSQAAILSFYRFIWK 262 (262)
Q Consensus 236 ~~l~~~~~~~d~~~~~~~~~f~~~~~~ 262 (262)
..+|+|.+++|.+++++..+|||||||
T Consensus 241 ~~L~~rs~~vD~~sk~~i~~fY~fiwk 267 (280)
T PLN02878 241 SILWQRAQSVDLSSKAAITSFYMFIWK 267 (280)
T ss_pred HHHHHHhHhcCcccHHHHHHHHHHHHH
Confidence 999999999999999999999999998
No 2
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=100.00 E-value=1.3e-44 Score=325.01 Aligned_cols=236 Identities=35% Similarity=0.517 Sum_probs=192.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 044153 24 FFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMW 103 (262)
Q Consensus 24 ~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~ 103 (262)
.+...+..++.....+.+.+++|||+|+|+|++|||+||++||++|+++++....++.++++.+++..|++.+..+ +++
T Consensus 51 ~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~-~~~ 129 (308)
T PRK12887 51 NLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITV-GIS 129 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHH
Confidence 4555566666666666666669999999999999999999999999999999999999999999988887766665 478
Q ss_pred HHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhc--c-hhHHHHHHH--HHHH--HHhhhcCCCh
Q 044153 104 FVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRA--W-KTYRVFKNI--DVCS--GCQVLDMPDV 176 (262)
Q Consensus 104 ~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~--~-~~~~~~~~~--~~~~--~~~~~~~~D~ 176 (262)
.+++++|| .||+|+||+|+.++++.+..+|..+..|.+.+......+ . +...++... +++. ..+.||++|+
T Consensus 130 ~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~g~i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~ 207 (308)
T PRK12887 130 LLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDM 207 (308)
T ss_pred HHHHHHHc--CCchhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 89999999 699999999999998888777776666765542221111 1 233232222 2333 3339999999
Q ss_pred hhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHH
Q 044153 177 DGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSF 256 (262)
Q Consensus 177 e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f 256 (262)
|||++.|+||+|+++|+|++.+++..++.++|+..++.+.....++...++..+|.+.+..+++|.+++|.+|+++..+|
T Consensus 208 egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (308)
T PRK12887 208 EGDRQYQITTFTLRLGKQAVFKLSCWVLTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQF 287 (308)
T ss_pred hhHHHcCCcchhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHH
Confidence 99999999999999999999999999999999988887776666666666779999999999999999999999999999
Q ss_pred HHhhcC
Q 044153 257 YRFIWK 262 (262)
Q Consensus 257 ~~~~~~ 262 (262)
||||||
T Consensus 288 y~~iw~ 293 (308)
T PRK12887 288 YQFIWK 293 (308)
T ss_pred HHHHHH
Confidence 999998
No 3
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.4e-33 Score=250.51 Aligned_cols=215 Identities=18% Similarity=0.219 Sum_probs=170.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhhcC--CCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 044153 28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKIN--KPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFV 105 (262)
Q Consensus 28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n--~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~ 105 (262)
.++.+++.+++++++|++||+.|+|+|++| +|+||+|+|++|++||+.++.++.++++.+++.+|+.++..+. ....
T Consensus 39 l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~ 117 (286)
T PRK12895 39 ILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIF 117 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHH
Confidence 455677889999999999999999999998 6899999999999999999999999999988888988877664 4566
Q ss_pred HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-h--hH--HHHHHHHHH--HHHhhhcCCChhh
Q 044153 106 LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-K--TY--RVFKNIDVC--SGCQVLDMPDVDG 178 (262)
Q Consensus 106 ~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~--~~--~~~~~~~~~--~~~~~~~~~D~e~ 178 (262)
+...|+ .+||++..+++..+...+..+.+|+.. +.++ + .. .++...++| .++++|++||+|+
T Consensus 118 l~~~yp------~~KR~t~~~~~~lG~~~g~~~l~g~~A-----v~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~ 186 (286)
T PRK12895 118 LFIIDP------FLKRYTAWRHIYMGSIIGLGVLAGYLA-----VIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEY 186 (286)
T ss_pred HHHHHH------HHHhCccccHHHHHHHHHhHHHHHHHH-----HcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhh
Confidence 677787 489999999988888777655555532 3333 2 11 222233333 4566999999999
Q ss_pred hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHH-HHHH
Q 044153 179 DKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAI-LSFY 257 (262)
Q Consensus 179 D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~-~~f~ 257 (262)
|++.|+||+|+++|++++.++...+..++.....+.+.... ..++.++..+.+..+.+|++.+|.+|+++| +.||
T Consensus 187 D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~~~~----~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F 262 (286)
T PRK12895 187 DKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGIYIR----TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFF 262 (286)
T ss_pred HHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99999999999999999987777777777766666664432 235667778888999999999999999999 6766
Q ss_pred H
Q 044153 258 R 258 (262)
Q Consensus 258 ~ 258 (262)
+
T Consensus 263 ~ 263 (286)
T PRK12895 263 N 263 (286)
T ss_pred H
Confidence 4
No 4
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=1.2e-32 Score=245.06 Aligned_cols=216 Identities=17% Similarity=0.166 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 044153 27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWF 104 (262)
Q Consensus 27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~ 104 (262)
.+++++++.+++++++|++|||+|+|+|++|+ |+||+|+|++|++|++.++..+..+++.++...|+.++..+. .++
T Consensus 40 ~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~-~~~ 118 (284)
T PRK12888 40 DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRELVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAP-LAV 118 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHH
Confidence 35678899999999999999999999999987 899999999999999999888888888888778877776664 456
Q ss_pred HHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-h-h-HHHHHHHHHHH--HHhhhcCCChhhh
Q 044153 105 VLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-K-T-YRVFKNIDVCS--GCQVLDMPDVDGD 179 (262)
Q Consensus 105 ~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~-~-~~~~~~~~~~~--~~~~~~~~D~e~D 179 (262)
+....|++ .||++..+++..+...+..+..|+.. +.|+ + . .......++|. +.++|++||+|+|
T Consensus 119 ~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~~a-----~~g~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D 187 (284)
T PRK12888 119 APLVVYPY------AKRFTNFPHAILGLAQAVGPVGAWIA-----VTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVD 187 (284)
T ss_pred HHHHHHHH------hhcccchhhHHHHHHHHHHHHHHHHH-----HcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 66789984 79999999998888777655555432 2233 2 2 22222333443 4459999999999
Q ss_pred HHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHH-HHH
Q 044153 180 KEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAIL-SFY 257 (262)
Q Consensus 180 ~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~-~f~ 257 (262)
++.|+||+|+++|+|++.++...+..++++...+.+.....++ ++..+..+....+.+|++.+|.+|++.|. .||
T Consensus 188 ~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff 263 (284)
T PRK12888 188 RRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFGLAVGFGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFF 263 (284)
T ss_pred HHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 9999999999999999988777777777766666655544443 45556677788899999999999988776 665
No 5
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=100.00 E-value=1.7e-32 Score=244.34 Aligned_cols=215 Identities=22% Similarity=0.226 Sum_probs=167.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 044153 28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFV 105 (262)
Q Consensus 28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~ 105 (262)
.++++++.+++++++|++||++|+|+|++|+ |+||+|+|++|++|++.+..++.++++.+.+..|+.++..+. .+++
T Consensus 47 l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~ 125 (289)
T PLN02809 47 LALFGCGALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGA-SSLL 125 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHH
Confidence 4678899999999999999999999999864 799999999999999999999999999998888887777765 5677
Q ss_pred HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-h-hHH--HHHHHHHHH--HHhhhcCCChhhh
Q 044153 106 LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-K-TYR--VFKNIDVCS--GCQVLDMPDVDGD 179 (262)
Q Consensus 106 ~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~-~~~--~~~~~~~~~--~~~~~~~~D~e~D 179 (262)
....||. +||++..+++..+...+..+..|+.. +.+. + ... ++...++|. +.+++++||+|+|
T Consensus 126 ~~~~Y~~------~KR~t~~~~~~lg~~~~~~~l~g~~a-----v~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D 194 (289)
T PLN02809 126 LVFTYPL------MKRFTFWPQAFLGLTFNWGALLGWAA-----VKGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDD 194 (289)
T ss_pred HHHHHhH------HHhcCcchHHHHHHHHHHHHHHHHHH-----HhCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhH
Confidence 7899994 89999999988877776655555422 3343 2 222 222223333 4559999999999
Q ss_pred HHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHH
Q 044153 180 KEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYR 258 (262)
Q Consensus 180 ~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~ 258 (262)
+|.|+||+|+++|+++...++ .+..+++..+...+.....+. .+.+++......+.+|++.+|.+|+++|.+.|+
T Consensus 195 ~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~ 269 (289)
T PLN02809 195 LKVGVKSTALRFGDDTKLWLT-GFGAASIGGLALSGYNAGLGW---PYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFV 269 (289)
T ss_pred HhCCCcccchhhcHHHHHHHH-HHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999999665554 466666666656665444332 344577888889999999999999999988875
No 6
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=100.00 E-value=1.6e-32 Score=244.42 Aligned_cols=217 Identities=18% Similarity=0.229 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhhcC--CCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 044153 27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKIN--KPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWF 104 (262)
Q Consensus 27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n--~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~ 104 (262)
..++++++.+++++++|++|||+|+|+|++| +|+||+|+|++|++|++.++.++.++++.++..+|+.+..++. .+.
T Consensus 37 ~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~ 115 (282)
T TIGR01475 37 TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSLALFLSASYFLNPLAFILSP-LVL 115 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHH
Confidence 3567888999999999999999999999997 6999999999999999999888887788888777877766554 456
Q ss_pred HHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-h--h--HHHHHHHHHHHH--HhhhcCCChh
Q 044153 105 VLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-K--T--YRVFKNIDVCSG--CQVLDMPDVD 177 (262)
Q Consensus 105 ~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~--~--~~~~~~~~~~~~--~~~~~~~D~e 177 (262)
+..+.||. +||++..+++..+...+.++..|+.. +.+. + . .......+++.. .++|++||+|
T Consensus 116 ~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~a-----~~g~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e 184 (282)
T TIGR01475 116 LVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWVA-----VIGTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYE 184 (282)
T ss_pred HHHHHHhh------HhccccccHHHHHHHHHHHHHHHHHH-----HhCCccchHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 67889994 89999999999888777665566533 2222 2 1 122233344443 3499999999
Q ss_pred hhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHH-H
Q 044153 178 GDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILS-F 256 (262)
Q Consensus 178 ~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~-f 256 (262)
+|+++|+||+|+++|+|++++....+..+++....+.+.....++ .+.++..+....+.++.+..|.+|+++|++ |
T Consensus 185 ~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f 261 (282)
T TIGR01475 185 FDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGFYVGNGY---IALLALILIGLILAYEHYIVDPGDQSKIQRAF 261 (282)
T ss_pred hHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhhCcH---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 999999999999999999988888877777777766665544333 344455555677888888889999988876 5
Q ss_pred HH
Q 044153 257 YR 258 (262)
Q Consensus 257 ~~ 258 (262)
+.
T Consensus 262 f~ 263 (282)
T TIGR01475 262 FY 263 (282)
T ss_pred HH
Confidence 44
No 7
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=100.00 E-value=4e-32 Score=242.74 Aligned_cols=221 Identities=27% Similarity=0.369 Sum_probs=177.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCC--CCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 044153 25 FIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKP--DLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIM 102 (262)
Q Consensus 25 ~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~--~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~ 102 (262)
+...+++.+++++.++++|++||++|+|+||+|+| +||+|||++|++|++.+..++.++++.+++.+|++++.+.+ .
T Consensus 46 ~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~-~ 124 (289)
T COG0382 46 LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSL-A 124 (289)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-H
Confidence 66778889999999999999999999999999997 99999999999999999999999999999999988877664 6
Q ss_pred HHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc---hhHHHHHHHHHHH--HHhhhcCCChh
Q 044153 103 WFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW---KTYRVFKNIDVCS--GCQVLDMPDVD 177 (262)
Q Consensus 103 ~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~D~e 177 (262)
+.++.+.|+ ++||.++.++++.+..++..+..|+.. ..++ +.+..+...++++ ++.+|+++|+|
T Consensus 125 ~~~l~~~Y~------~~Kr~~~~~~~~lg~~~~~~~~~g~~a-----~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e 193 (289)
T COG0382 125 ALVLALAYP------FLKRFTFLPQLVLGLAFGLGALAGAAA-----VGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIE 193 (289)
T ss_pred HHHHHHHHH------HhhcCCchHHHHHHHHHHHHHHHHHHH-----HhCccchHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 889999996 699999999999988888766666532 3332 2233333334444 44499999999
Q ss_pred hhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHH
Q 044153 178 GDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFY 257 (262)
Q Consensus 178 ~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~ 257 (262)
+|++.|+||+|+.+|++++..++.... ...+.+..++..... ...++..++.+....+.++....|.+|++.|+.++
T Consensus 194 ~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (289)
T COG0382 194 GDRKAGLKSLPVLFGIKKALALALLLL-LASALLVLLGLLAGL--LGLIYLLGLLVAALLLLYQILIVDVRDPPACFALF 270 (289)
T ss_pred chHhcCCcchHHHhCchhHHHHHHHHH-HHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 999999999999999999998887776 334334444433321 11356777788888999999999988999999988
Q ss_pred Hhh
Q 044153 258 RFI 260 (262)
Q Consensus 258 ~~~ 260 (262)
..-
T Consensus 271 ~~~ 273 (289)
T COG0382 271 DVN 273 (289)
T ss_pred HHh
Confidence 753
No 8
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=5.5e-32 Score=240.63 Aligned_cols=221 Identities=17% Similarity=0.193 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 044153 25 FIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIM 102 (262)
Q Consensus 25 ~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~ 102 (262)
+..+++..++.+.+++++|++||+.|+|+|++|+ |+||+|+|++|++|++.++.++.+.++.++..+|+.++..+. .
T Consensus 46 ~~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~ 124 (300)
T PRK12876 46 IKTISLGGSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-L 124 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-H
Confidence 4556788999999999999999999999999987 799999999999999999987777788888888988887775 5
Q ss_pred HHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHHHH---------HHHHHHHHhhhc
Q 044153 103 WFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRVFK---------NIDVCSGCQVLD 172 (262)
Q Consensus 103 ~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~ 172 (262)
+++....||. +||+++.+++..+...+..+..++.. +.++ ..+..+. ..+...++++|+
T Consensus 125 ~~~~~~iY~~------~KR~t~~~~~vLGl~~~~~~l~~~~A-----v~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa 193 (300)
T PRK12876 125 STLLMIIYPY------TKRVTFLCHWILGLVYYLAILMNFFA-----IIETPLSFSLFCMASLWGISFGMIIAANDIIYA 193 (300)
T ss_pred HHHHHHHHHh------HhcCCchhHHHHHHHHHHHHHHHHHH-----HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677789994 99999999988877776544445432 2222 1111111 112224566999
Q ss_pred CCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH--HHHHHHHHHhhcccCCCh
Q 044153 173 MPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHS--TLAFLLLQRARNVDVSSQ 250 (262)
Q Consensus 173 ~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~d~~~~ 250 (262)
+||+|+|++.|+||+|+++|++++..+...+..++.+.+++.+.....++ .++..+.. .....+.+|.+.+|.+++
T Consensus 194 ~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l~~~~l~~~g~~~~l~~--~~y~~~~~~~~~~l~~~~~~~~~~~~~~ 271 (300)
T PRK12876 194 IQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAYLLIGYFVSNKK--IFYLCSLVPLTVILKTIKHYSLIDKKKS 271 (300)
T ss_pred HcCHhhHHHcCCccchHHHCchhHHHHHHHHHHHHHHHHHHHHHHhhccH--HHHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence 99999999999999999999998877777777777776666665554443 23444443 223334666577777789
Q ss_pred HHHHHHHHh
Q 044153 251 AAILSFYRF 259 (262)
Q Consensus 251 ~~~~~f~~~ 259 (262)
+.|+.||+.
T Consensus 272 ~~~~~~F~~ 280 (300)
T PRK12876 272 TLEQKFFLG 280 (300)
T ss_pred HHHHHHHHh
Confidence 999999874
No 9
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.6e-32 Score=241.56 Aligned_cols=217 Identities=21% Similarity=0.268 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 044153 28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLS 107 (262)
Q Consensus 28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~ 107 (262)
.++++++.++.++++|++|||+|+|+|++|+|+||+++|++|++|++.++.++.++++.+++..|+.++.++. .+.++.
T Consensus 40 ~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~-~~~~~~ 118 (276)
T PRK12882 40 TGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIAL-FNSLLL 118 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHH
Confidence 5678889999999999999999999999999999999999999999999999999999998888877766654 566778
Q ss_pred hhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc--hh--HHHHHHHHHHHHH--hhhcCCChhhhHH
Q 044153 108 SAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW--KT--YRVFKNIDVCSGC--QVLDMPDVDGDKE 181 (262)
Q Consensus 108 ~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~--~~--~~~~~~~~~~~~~--~~~~~~D~e~D~~ 181 (262)
+.||. |+||++..+++..+...|..+..|.. ..+. +. ...+...+++.+. ++||+||+|+|++
T Consensus 119 ~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~------~~~~~~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~ 187 (276)
T PRK12882 119 VLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGA------AVGTEGLLALLVLFALAALATLAREIIKDVEDIEGDRA 187 (276)
T ss_pred HHHHH-----HHhcccchhHHHHHHHHHHHHHHHHH------HhcccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence 99996 89999988888776655543333322 1221 11 1222233444333 3999999999999
Q ss_pred cCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH-HHHHHHHhhcccCCChHHHHHHHHh
Q 044153 182 HGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTL-AFLLLQRARNVDVSSQAAILSFYRF 259 (262)
Q Consensus 182 ~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~d~~~~~~~~~f~~~ 259 (262)
+|+||+|+++|+|++.++...+.........+.......++ .|.+..... ...+....+..|.+|++.|+++|++
T Consensus 188 ~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~ 263 (276)
T PRK12882 188 EGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTFGL---WYLVLVAPADLVMLAAAYRSLKKTDPTASQKLLKY 263 (276)
T ss_pred cCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999998877776555544433222222222 333333333 3344445666777888899888875
No 10
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=100.00 E-value=2.7e-31 Score=236.75 Aligned_cols=178 Identities=21% Similarity=0.261 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHH
Q 044153 28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPP-LISTIIMWFVL 106 (262)
Q Consensus 28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~-~~~~~~~~~~~ 106 (262)
++.+++++.+.++++|.+|||+|+|+|++|+|+||+++|++|+++++.+..++..+++.++..++.+. ..++ ..+.+.
T Consensus 40 ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~-~~~~~~ 118 (283)
T TIGR01476 40 LLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWLIVLFT-VVGIVL 118 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 44477899999999999999999999999999999999999999999999999999998888777666 3443 457778
Q ss_pred HhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHH--HHHHHHHH--HHhhhcCCChhhhHH
Q 044153 107 SSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRV--FKNIDVCS--GCQVLDMPDVDGDKE 181 (262)
Q Consensus 107 ~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~--~~~~~~~~--~~~~~~~~D~e~D~~ 181 (262)
+++|| .||+|+||+++.+++..+..++.....+.+. ..+. +...+ .....++. ....||+||+|+|++
T Consensus 119 ~~~Ys--~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~ 191 (283)
T TIGR01476 119 AVIYS--MPPIKLKRNGWLGPPAVGLSYEGLPWMAGHA-----IFAPLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQ 191 (283)
T ss_pred hheec--CchhhhccCCCccHHHHHHHHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHH
Confidence 99999 5999999999888888776554221111111 1122 12111 11112222 233999999999999
Q ss_pred cCCcccceeechHHHHHHHHHHHHHHHHHHHH
Q 044153 182 HGIQTLSIALGKEKVLWLGVYMLLVVYGALVI 213 (262)
Q Consensus 182 ~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~ 213 (262)
+|+||+|+++|+|++++++..+....+...+.
T Consensus 192 ~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~ 223 (283)
T TIGR01476 192 LGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG 223 (283)
T ss_pred cCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888877777765554
No 11
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=8.6e-32 Score=240.39 Aligned_cols=216 Identities=20% Similarity=0.211 Sum_probs=163.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 044153 28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFV 105 (262)
Q Consensus 28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~ 105 (262)
.++++++.+++++++|++|||+|+|+|++++ ++||+|+|++|++|+..++.++.++++.++..+|+.++.++. .+.+
T Consensus 48 ~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~ 126 (290)
T PRK12870 48 VGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVP 126 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHH
Confidence 4677889999999999999999999998743 589999999999999999999999999998888887777764 5667
Q ss_pred HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh--HHHHHHHHHHH--HHhhhcCCChhhhH
Q 044153 106 LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT--YRVFKNIDVCS--GCQVLDMPDVDGDK 180 (262)
Q Consensus 106 ~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~--~~~~~~~~D~e~D~ 180 (262)
....||. .||++..+++..+..++..+..|+.. ..++ +. .......++|. +.+.|++||+|+|+
T Consensus 127 ~~~~Y~~------~KR~t~~~~~~lg~~~~~~~l~g~~a-----~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~ 195 (290)
T PRK12870 127 VIFLYPL------AKRVFPVPQLVLAIAWGFAVLISWSA-----VTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDL 195 (290)
T ss_pred HHHHhhh------hhhccccceeeehHHHHhHHHHHHHH-----HcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHH
Confidence 7899994 79998888888777777655555432 2333 22 22223334444 34499999999999
Q ss_pred HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcc--cCCChHHHHHHHH
Q 044153 181 EHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNV--DVSSQAAILSFYR 258 (262)
Q Consensus 181 ~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--d~~~~~~~~~f~~ 258 (262)
+.|+||+|+++|++++.++.. +..+....+...+.....++ +|..+.......+.++..++ |.+|++.|++||+
T Consensus 196 ~~G~~slav~~G~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~ 271 (290)
T PRK12870 196 RIGVNSSAIFFGRYAPEAIGL-FFALTVGFLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFL 271 (290)
T ss_pred HCCCcchhHHhccccHHHHHH-HHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHH
Confidence 999999999999998876655 34444444444454443332 34456666677888888777 8788999999886
Q ss_pred h
Q 044153 259 F 259 (262)
Q Consensus 259 ~ 259 (262)
.
T Consensus 272 ~ 272 (290)
T PRK12870 272 Q 272 (290)
T ss_pred H
Confidence 3
No 12
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=100.00 E-value=1.3e-31 Score=238.39 Aligned_cols=216 Identities=20% Similarity=0.275 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 044153 27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVL 106 (262)
Q Consensus 27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~ 106 (262)
..++++++.++.++++|++|||+|+|+|++|+|+||+|+|++|++|++.++.++..+++.+++..|+.++..+. .+.+.
T Consensus 38 ~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~ 116 (279)
T PRK09573 38 GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIAL-LNSIL 116 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHH
Confidence 45678889999999999999999999999999999999999999999999999999999888888887777664 56677
Q ss_pred HhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHHHHHHHHHHHHh--hhcCCChhhhHHcC
Q 044153 107 SSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRVFKNIDVCSGCQ--VLDMPDVDGDKEHG 183 (262)
Q Consensus 107 ~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~D~e~D~~~G 183 (262)
.++||. ++||++..+++..+...|..+..|+.. +.+. +....+...+++.+.. .||+||+|+|+++|
T Consensus 117 ~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~-----~~~~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G 186 (279)
T PRK09573 117 LYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLA-----VFNVLRIIILFLCAFFSTWSREIVKDIEDIEGDLKEN 186 (279)
T ss_pred HHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHH-----HccchHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCC
Confidence 899995 689999989998888777655555432 2222 2223333445555444 79999999999999
Q ss_pred CcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH-hhcccCCChHHHHHH
Q 044153 184 IQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQR-ARNVDVSSQAAILSF 256 (262)
Q Consensus 184 ~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~d~~~~~~~~~f 256 (262)
+||+|+++|+|++.++...+.........+..... .....|.++..+....+.++ .+..+.+|++.|...
T Consensus 187 ~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 257 (279)
T PRK09573 187 VITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLG---IFGIYYLIVVIICDILFIIAMLILLKNPSIEGASKA 257 (279)
T ss_pred CccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHH
Confidence 99999999999999887766655555444332222 12234444444444444444 333344556655544
No 13
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=2.4e-31 Score=236.56 Aligned_cols=217 Identities=17% Similarity=0.255 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 044153 26 IGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFV 105 (262)
Q Consensus 26 ~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~ 105 (262)
...++.+++.++.++++|++|||+|+|+|++|+|+||+++|++|+++++.++.++.++++.++..+|+..+...+ .+.+
T Consensus 37 ~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~ 115 (279)
T PRK12884 37 DEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLAFLVVI-LVSV 115 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHH
Confidence 345677899999999999999999999999999999999999999999999999999999888888877766654 5777
Q ss_pred HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcch-h-HHHHHHHHHHHHH--hhhcCCChhhhHH
Q 044153 106 LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWK-T-YRVFKNIDVCSGC--QVLDMPDVDGDKE 181 (262)
Q Consensus 106 ~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~-~-~~~~~~~~~~~~~--~~~~~~D~e~D~~ 181 (262)
.++.||. ++||+++.++++.+..++.++..++.. ..+.+ . .......+++... ..+|++|+|+|++
T Consensus 116 ~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~ 185 (279)
T PRK12884 116 LGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA-----VGELNEAVILLAAMAFLMTLGREIMKDIEDVEGDRL 185 (279)
T ss_pred HHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH-----hCCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 8999996 689999888988887777554444322 11212 1 2222233444433 3999999999999
Q ss_pred cCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHh-hcccCCChHHHHHH
Q 044153 182 HGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRA-RNVDVSSQAAILSF 256 (262)
Q Consensus 182 ~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~d~~~~~~~~~f 256 (262)
+|+||+|+++|+|++.++...+....++........+..++ .|.....+....+.++. +..+.+|++.++.+
T Consensus 186 ~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (279)
T PRK12884 186 RGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKV 258 (279)
T ss_pred cCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 99999999999999998887777766665544443332232 34434344444444443 44455556655554
No 14
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.3e-31 Score=236.65 Aligned_cols=218 Identities=20% Similarity=0.191 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 044153 27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWF 104 (262)
Q Consensus 27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~ 104 (262)
..++++++.+++++++|++|||+|+|+|++|+ |+||+|+|++|++|++.+...+.+.++.+....|+++..++. .+.
T Consensus 43 ~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~ 121 (291)
T PRK12886 43 QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAGRAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PAL 121 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 35667889999999999999999999999976 799999999999999988766666666666677877777664 466
Q ss_pred HHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc---hhHHHHHHHHHHH--HHhhhcCCChhhh
Q 044153 105 VLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW---KTYRVFKNIDVCS--GCQVLDMPDVDGD 179 (262)
Q Consensus 105 ~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~~D~e~D 179 (262)
+....||. .||++..+++..+...+.++..|+.. ..|+ ++...+...++|. +.+.++++|+|+|
T Consensus 122 ~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~g~~a-----~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D 190 (291)
T PRK12886 122 FFLLLYSY------CKRFTALAHVVLGFCLALAPLGAWIA-----IRGTIELPAILLGLAVLFWVAGFDILYALQDLEFD 190 (291)
T ss_pred HHHHHHhh------hhccccccHHHHHHHHHHHHHHHHHH-----HcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHhH
Confidence 67899994 79999999998888777655555432 2333 2222333344454 3348999999999
Q ss_pred HHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCC-hHHHHHHHH
Q 044153 180 KEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSS-QAAILSFYR 258 (262)
Q Consensus 180 ~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~-~~~~~~f~~ 258 (262)
+++|+||+|+++|++++.++...+..+.+...++.+.....++ .|.++..+....+.++.+..+.+| ++.|+++|+
T Consensus 191 ~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~ 267 (291)
T PRK12886 191 RKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGISAGLGP---WFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFN 267 (291)
T ss_pred HHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 9999999999999999988877777777766666655444333 344444455555667777778777 468888766
Q ss_pred h
Q 044153 259 F 259 (262)
Q Consensus 259 ~ 259 (262)
+
T Consensus 268 ~ 268 (291)
T PRK12886 268 M 268 (291)
T ss_pred H
Confidence 4
No 15
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=3.1e-31 Score=237.23 Aligned_cols=217 Identities=15% Similarity=0.144 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhhcC--CCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 044153 28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKIN--KPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFV 105 (262)
Q Consensus 28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n--~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~ 105 (262)
.++++++.+++++++|++|||+|+|+|++| +|+||+|+|++|++|++.+..++.+.++.+.+..|+.+...+. .+.+
T Consensus 51 l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~ 129 (300)
T PRK13106 51 LILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVAL 129 (300)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHH
Confidence 467788999999999999999999999997 5899999999999999998877777777777778887777664 4556
Q ss_pred HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHh--h-cc--hhHH-HHHHHHHHH--HHhhhcCCChh
Q 044153 106 LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQV--R-AW--KTYR-VFKNIDVCS--GCQVLDMPDVD 177 (262)
Q Consensus 106 ~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~--~-~~--~~~~-~~~~~~~~~--~~~~~~~~D~e 177 (262)
....||. +||++..++++.+...+..+..|+........ . .. +.+. ++...++|. +.++|++||+|
T Consensus 130 ~~~~Y~~------~KR~t~~~~~~lg~~~~~~~~~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e 203 (300)
T PRK13106 130 IAMSYPY------MKRYTAFANYHLASIQGLAVFSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAE 203 (300)
T ss_pred HHHHHhH------HhcCCcchHHHHHHHHHHHHHHHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchh
Confidence 6778994 89999999999888877655555532111000 0 00 1112 222233333 45599999999
Q ss_pred hhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHH
Q 044153 178 GDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFY 257 (262)
Q Consensus 178 ~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~ 257 (262)
+|+|.|+||+|+++| +++++++..+..++...+.+.+....+++ .|..+..+....+.+++...+.+ +.|...|
T Consensus 204 ~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~v~l~~~~~~~~~lg~---~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~F 277 (300)
T PRK13106 204 FDREMGLHSFAVVLG-KWALTFAGLNQLFSVVLDLLGDLYYGLGP---IAIAATILHGLIMAYAYYLASKK--GDFGRAF 277 (300)
T ss_pred hHHHCCCCccHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCc--hHHHHHH
Confidence 999999999999999 88888888888888887777766554443 45566667788888898888876 4454433
No 16
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=100.00 E-value=3.6e-31 Score=236.14 Aligned_cols=219 Identities=16% Similarity=0.225 Sum_probs=162.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 044153 25 FIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIM 102 (262)
Q Consensus 25 ~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~ 102 (262)
+...++++++.+++++++|++|||+|+|.|++|+ |+||+|+|++|++|++.++.++.++++.+.+..|+.++.++. .
T Consensus 44 ~~~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~-~ 122 (285)
T PRK12847 44 ISLLVLFIIGSVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSF-I 122 (285)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-H
Confidence 3446788899999999999999999999999744 799999999999999999999999999888888877777664 5
Q ss_pred HHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh--HHHHHHHHHHHH--HhhhcCCChh
Q 044153 103 WFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT--YRVFKNIDVCSG--CQVLDMPDVD 177 (262)
Q Consensus 103 ~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~~--~~~~~~~D~e 177 (262)
+.+..+.||. .||++..++++.+...+..+..++.. ..+. +. ...+...+++.. ...+++||+|
T Consensus 123 ~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~l~~~~a-----~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e 191 (285)
T PRK12847 123 AVILIVLYPL------MKRFFYWPQLFLGFTFNMGILMAFAA-----VQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKK 191 (285)
T ss_pred HHHHHHhccc------cccCCcccHHHHHHHHHHHHHHHHHH-----HcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHh
Confidence 6777999994 79988888888877776554445432 2233 22 222333344443 3499999999
Q ss_pred hhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHH
Q 044153 178 GDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFY 257 (262)
Q Consensus 178 ~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~ 257 (262)
+|+++|+||+|+++|+|++.++........+...+........+ +++. +.......+.++....|.+|++.|++.|
T Consensus 192 ~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~---~~y~-~~~~~~~~l~~~~~~~~~~~~~~~~~~f 267 (285)
T PRK12847 192 DDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISSLHN---IFYL-AILAAAGIFYYQYKLLDFDNPANCMYAF 267 (285)
T ss_pred hHHHcCCchhHHHhccccHHHHHHHHHHHHHHHHHHHHHhcCcH---HHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999999998887776655555444332222222 2232 3334455777788888888888888877
Q ss_pred Hh
Q 044153 258 RF 259 (262)
Q Consensus 258 ~~ 259 (262)
+.
T Consensus 268 ~~ 269 (285)
T PRK12847 268 KA 269 (285)
T ss_pred HH
Confidence 64
No 17
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=100.00 E-value=4.3e-31 Score=235.80 Aligned_cols=218 Identities=18% Similarity=0.227 Sum_probs=164.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 044153 26 IGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMW 103 (262)
Q Consensus 26 ~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~ 103 (262)
...+++.++.+++++++|++|||+|+|+|++|+ |+||+|||++|++|++.++.++.++++.+.+..|+.+...++ ..
T Consensus 47 ~~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~-~~ 125 (291)
T PRK12874 47 KLLILGILAAVSARNFAMAFNRLVDRDIDKDNPRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSF-PF 125 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhccccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HH
Confidence 345778889999999999999999999999976 899999999999999999988888888888888887777663 56
Q ss_pred HHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh--HHHHHHHHHHHHH--hhhcCCChhh
Q 044153 104 FVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT--YRVFKNIDVCSGC--QVLDMPDVDG 178 (262)
Q Consensus 104 ~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~~~--~~~~~~D~e~ 178 (262)
.+....||+ +||++..+++..+...+.++.+|+.. +.|. +. ..++...++|... +.|++||+|+
T Consensus 126 ~~~~~~Y~~------~KR~t~~~~~~~g~~~~~~~l~G~~a-----v~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~ 194 (291)
T PRK12874 126 LIVLGGYSY------FKRFSSLAHLVLGLSLGLAPIAGVVA-----VLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEF 194 (291)
T ss_pred HHHHHHHhh------hcccccccHHHHHHHHHHHHHHHHHH-----HcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 677889995 89999999999988888766666532 3333 22 2233333455443 3999999999
Q ss_pred hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHH
Q 044153 179 DKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYR 258 (262)
Q Consensus 179 D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~ 258 (262)
|+++|+||+|+++|++++.+....+.....+.....+.....+ .++.++.......+.++.+..+.+|++.|+.||.
T Consensus 195 D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~ 271 (291)
T PRK12874 195 DKKRGLHSIPSKFGEKATLFISRLFHLLAVLFWLLFVWCAHLG---LFAYLGVIVSALILLYEHYLVRKDFKKIDKAFFT 271 (291)
T ss_pred HHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 9999999999999999988776666555444444433322222 2344566666777888877777667778888765
No 18
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=100.00 E-value=4.5e-31 Score=234.94 Aligned_cols=216 Identities=19% Similarity=0.282 Sum_probs=160.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 044153 28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFV 105 (262)
Q Consensus 28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~ 105 (262)
.++++++.++.++++|++|||+|+|+|++|+ |+||+|+|++|++|++.++.++.++++.+++..|+.+..++. .+.+
T Consensus 42 ~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~ 120 (281)
T TIGR01474 42 LGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGV-ASLA 120 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHH
Confidence 4667788899999999999999999998753 799999999999999999999999999998888887777764 6777
Q ss_pred HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh--HHHHHHHHHHHH--HhhhcCCChhhhH
Q 044153 106 LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT--YRVFKNIDVCSG--CQVLDMPDVDGDK 180 (262)
Q Consensus 106 ~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~~--~~~~~~~D~e~D~ 180 (262)
..+.||. .||++..+++..+...+..+..|+.. ..++ +. ..++...+++.. ..+|++||+|+|+
T Consensus 121 ~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~a-----~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~ 189 (281)
T TIGR01474 121 LVATYPF------MKRITYWPQLVLGLAFGWGALMGWAA-----VTGDLSTAAWVLYLANILWTLGYDTIYAMQDKEDDI 189 (281)
T ss_pred HHHHhch------hcccccccHHHHHHHHHHHHHHHHHH-----HcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHH
Confidence 8999994 89999999988887777655556532 2333 22 222333344443 3499999999999
Q ss_pred HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHh
Q 044153 181 EHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYRF 259 (262)
Q Consensus 181 ~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~ 259 (262)
++|+||+|+++|+|+++. ...+..+......+.......++ ++.++..+....+.++..+.|.+|++.|+++|+.
T Consensus 190 ~~G~~tlpv~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~ 264 (281)
T TIGR01474 190 KIGVKSTALRFGDNTKPW-LGGLYALMILLLALAGLIAGLGP---VYYLGLAAAALLLIRQIATLDIRDPENCLKLFKA 264 (281)
T ss_pred HcCCCcccHHhhhhhHHH-HHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999988654 33344333333333333333222 3445556667778888888888888889888875
No 19
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=100.00 E-value=1e-30 Score=236.74 Aligned_cols=186 Identities=22% Similarity=0.308 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHH
Q 044153 29 LKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRS-------PPLISTII 101 (262)
Q Consensus 29 ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~-------~~~~~~~~ 101 (262)
...++.+.+..+++|++|||+|+|+|++|+|.||+++|++|++|++.+..++..+++.++..++. +.+....+
T Consensus 53 ~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtRpl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~ 132 (331)
T PRK12392 53 ALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSIL 132 (331)
T ss_pred HHHHHHHHHHHHHHhHHhcceeecccccCCCCCCCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHH
Confidence 33455556677889999999999999999999999999999999999999888888777665542 22233224
Q ss_pred HHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhH--HHHHHHHHHH--HHhhhcCCCh
Q 044153 102 MWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTY--RVFKNIDVCS--GCQVLDMPDV 176 (262)
Q Consensus 102 ~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~--~~~~~~~~~~--~~~~~~~~D~ 176 (262)
.+++++++|| .||+++||+++.+++..+..++.....+.. ...++ +.. ......+++. ..++||++|+
T Consensus 133 ~~l~l~~~YS--~~P~~lKr~~~~g~~~vGl~~~~~~~~~~~-----a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~ 205 (331)
T PRK12392 133 AGLFVAYIYS--APPLKLKKNILTSAPAVGFSYGFITFLSAN-----ALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSV 205 (331)
T ss_pred HHHHHhhhhc--CCchhhhccchhHHHHHHHHHHHHHHHHHH-----HHhcCCCHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 5678899999 599999999988887776666543332221 13333 222 2222223333 3349999999
Q ss_pred hhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchh
Q 044153 177 DGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFL 221 (262)
Q Consensus 177 e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 221 (262)
|+|++.|+||+|+++|++++.++......++.+..+..+.....+
T Consensus 206 egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~~~ 250 (331)
T PRK12392 206 EGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWGFT 250 (331)
T ss_pred hhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999887766656666666655554444
No 20
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=100.00 E-value=7e-31 Score=233.87 Aligned_cols=215 Identities=19% Similarity=0.221 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 044153 28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFV 105 (262)
Q Consensus 28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~ 105 (262)
.++++++.++.++++|++|||+|+|+|++++ |+||+|||++|++|+..++.++..+++.+++.+|+.+..+++ .+.+
T Consensus 44 ~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~ 122 (282)
T PRK12848 44 LVVFVLGVFLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSV-AALA 122 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHH
Confidence 4567788899999999999999999998744 689999999999999999999999998888888877777664 5667
Q ss_pred HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh--HHHHHHHHHHH--HHhhhcCCChhhhH
Q 044153 106 LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT--YRVFKNIDVCS--GCQVLDMPDVDGDK 180 (262)
Q Consensus 106 ~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~--~~~~~~~~D~e~D~ 180 (262)
..+.||. .||++..+++..+...+..+.+|+.. ..++ +. ...+...+++. ....+++||+|+|+
T Consensus 123 ~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~~~g~~a-----~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~ 191 (282)
T PRK12848 123 LAWIYPF------MKRYTHLPQVVLGAAFGWGIPMAFAA-----VQGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDL 191 (282)
T ss_pred HHHHHHh------HHhcCcccHHHHHHHHHHHHHHHHHH-----HhCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHH
Confidence 7899984 79988888888777777655556533 2233 22 22222223333 33489999999999
Q ss_pred HcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHH
Q 044153 181 EHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYR 258 (262)
Q Consensus 181 ~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~ 258 (262)
++|+||+|+++|+|++.+...... +......+.+.....+ ..|.++..+....+.++...+|.+|+++|+++|+
T Consensus 192 ~~G~~tlpv~~G~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~ 265 (282)
T PRK12848 192 KIGIKSTAILFGRYDKLIIGLLQL-ATLALLAWAGWLLGLG---WAYYWGLLVAAALFVYQQKLIRDREREACFKAFL 265 (282)
T ss_pred HcCCccccHHhccccHHHHHHHHH-HHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 999999999999998877654333 3333333333332222 2345566677778888888999999888887774
No 21
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=99.98 E-value=1e-30 Score=235.64 Aligned_cols=217 Identities=16% Similarity=0.165 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 044153 27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWF 104 (262)
Q Consensus 27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~ 104 (262)
..++++++.+++++++|++|||+|+|+|++++ ++||+|+|++|++|++.+..++.++|+.+.+..|++++.+++ .+.
T Consensus 73 ~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~-~~~ 151 (314)
T PRK12878 73 HLFLFFVGAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGI-ASL 151 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHH
Confidence 46778899999999999999999999998744 799999999999999999999999999888888877777664 577
Q ss_pred HHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-h-h-HHHHHHHHHHH--HHhhhcCCChhhh
Q 044153 105 VLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-K-T-YRVFKNIDVCS--GCQVLDMPDVDGD 179 (262)
Q Consensus 105 ~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~-~-~~~~~~~~~~~--~~~~~~~~D~e~D 179 (262)
+..+.||. .||++..++...+...+..+..|++. ..|+ + . ..++...+++. ...++++||+|+|
T Consensus 152 ~~~~~Y~~------~KR~t~~~~~~~Gl~~~~~~l~g~~a-----~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D 220 (314)
T PRK12878 152 AIVAAYPF------MKRITWWPQFFLGLAFSWGALMGWAA-----HFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDD 220 (314)
T ss_pred HHHHHHHH------HHhcCCcchHHHHHHHHHHHHHHHHH-----HhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhH
Confidence 77999994 89988887777776665555556543 2333 2 2 22223334444 3448999999999
Q ss_pred HHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHHh
Q 044153 180 KEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYRF 259 (262)
Q Consensus 180 ~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~~ 259 (262)
+++|+||+|+++|++++++......... ....+.......++ .+.++.......+.++..+.|.+|++.|+++|+.
T Consensus 221 ~~aGi~slpv~~G~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~ 296 (314)
T PRK12878 221 ALIGVKSTARLFGDHTKTWLVLFYGLAV-LLMGLAFWLAGVPL---LALLGLLAAAAHLAWQIARLDIDDPDQCLRLFKS 296 (314)
T ss_pred HHcCCcccchHhchhhHHHHHHHHHHHH-HHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHcccCChHHHHHHHHH
Confidence 9999999999999999987764443333 33333333333333 3334444445567888888888888889999874
No 22
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=99.98 E-value=1.2e-30 Score=235.54 Aligned_cols=177 Identities=20% Similarity=0.266 Sum_probs=135.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Q 044153 29 LKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSS 108 (262)
Q Consensus 29 ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~ 108 (262)
+.++++..+.++++|++|||+|+|+|++|+|+||+++|++|+++++.+..++..+++.+++.+|++...+++ .+.+.++
T Consensus 68 l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l-~~~~~~~ 146 (314)
T PRK07566 68 AGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAAL-LGLFLAW 146 (314)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHH-HHHHHHH
Confidence 456778888999999999999999999999999999999999999999999999999888888877666654 5777899
Q ss_pred hccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhc-c-hhHHHHHH--HHHHH--HHhhhcCCChhhhHHc
Q 044153 109 AYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRA-W-KTYRVFKN--IDVCS--GCQVLDMPDVDGDKEH 182 (262)
Q Consensus 109 ~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~-~-~~~~~~~~--~~~~~--~~~~~~~~D~e~D~~~ 182 (262)
+|| .||+++||+++.+++..+..++..+..+.+. ...+ . +...++.. .+++. ....||++|+|+|+++
T Consensus 147 ~Yt--~gP~~lK~~~~~g~i~vg~~~g~~~~~~g~~----~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~a 220 (314)
T PRK07566 147 IYS--APPLRLKQNGWLGNYAVGLSYEGLPWWAGAA----AFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQL 220 (314)
T ss_pred Hhc--CCccccccccchhhHHHHHHHHHHHHHHHHH----HhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHc
Confidence 999 5999999999888888877665332222111 1211 1 11112111 11122 2339999999999999
Q ss_pred CCcccceeechHHHHHHHHHHHHHHHHHHH
Q 044153 183 GIQTLSIALGKEKVLWLGVYMLLVVYGALV 212 (262)
Q Consensus 183 G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l 212 (262)
|+||+|+++|++++++++..++...++..+
T Consensus 221 G~~Tlpv~~G~~~a~~l~~~l~~~~~~~~~ 250 (314)
T PRK07566 221 GLRSLPVVFGEKNAARIACVVIDLFQLAVI 250 (314)
T ss_pred CCcccceeEcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888777777666553
No 23
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=99.97 E-value=9.5e-30 Score=228.91 Aligned_cols=224 Identities=23% Similarity=0.253 Sum_probs=151.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhh-------hHHHHHHH
Q 044153 28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLR-------SPPLISTI 100 (262)
Q Consensus 28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~-------~~~~~~~~ 100 (262)
.+.+++++.+.++++|.+|||+|+|.|++|+|+||+++|++|+++++..+..+..+++.++..+. ++.+.++
T Consensus 56 ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~- 134 (306)
T TIGR02056 56 ALCMLLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLA- 134 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH-
Confidence 35556788999999999999999999999999999999999999999988888888777665542 2334444
Q ss_pred HHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh-HH-HHHHHHHHHHH--hhhcCCC
Q 044153 101 IMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT-YR-VFKNIDVCSGC--QVLDMPD 175 (262)
Q Consensus 101 ~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~-~~-~~~~~~~~~~~--~~~~~~D 175 (262)
+.+++.+++|| .||+++||+++++++..+..++..+..+.+. ..++ +. .. .....+++... ..||+||
T Consensus 135 ~~~~~~~~~Yt--~gP~~lk~~g~~G~i~vg~~~~~~~~~~~~a-----~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D 207 (306)
T TIGR02056 135 LFGSFIAFIYS--APPLKLKQNGWLGNFALGASYIALPWWAGHA-----LFGELNPDIAVLTLIYSIAGLGIAIVNDFKS 207 (306)
T ss_pred HHHHHHHHHHc--CChhhhhhcccHHHHHHHHHHHHHHHHHHHH-----HhCCCcHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 46778899999 5999999999888877665554322222111 2333 22 11 12222334433 3999999
Q ss_pred hhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcc-hhHHHH--HHHHHHHHHHHH-HHHHhhcccCCChH
Q 044153 176 VDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSP-FLESKL--ITIIGHSTLAFL-LLQRARNVDVSSQA 251 (262)
Q Consensus 176 ~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~~--~~~~~~~~~~~~-l~~~~~~~d~~~~~ 251 (262)
+|+|++.|+||+|+++|+|++++++..+...++...+....... .++..+ ....++...... +.++..+.|..-++
T Consensus 208 ~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~ll~~p~~~~~~~~~~~~~~~~~~~~~~ 287 (306)
T TIGR02056 208 VEGDRALGLQSLPVAFGIETAAWICVGAIDIFQGLIAAYLLAIGENLYAAALVALIIPQITFQDKYFLKDPLKNDVKYQA 287 (306)
T ss_pred hHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhChHhhCcchhh
Confidence 99999999999999999999999888777665654444332222 232211 122233332222 22233455666677
Q ss_pred HHHHHHHh
Q 044153 252 AILSFYRF 259 (262)
Q Consensus 252 ~~~~f~~~ 259 (262)
+.+.||..
T Consensus 288 ~~~~~~~~ 295 (306)
T TIGR02056 288 SAQPFLVL 295 (306)
T ss_pred hhhHHHHH
Confidence 88877753
No 24
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=4e-30 Score=228.72 Aligned_cols=217 Identities=19% Similarity=0.125 Sum_probs=167.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHh----hhHHHHHH
Q 044153 26 IGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIML----RSPPLIST 99 (262)
Q Consensus 26 ~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~----~~~~~~~~ 99 (262)
...++++++++++++++|++||+.|+|+|++|+ ++||+|+|++|++|++.+..++.++++.+.+.+ |+.++..+
T Consensus 44 ~~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~ 123 (294)
T PRK12873 44 LLLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLA 123 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 346788999999999999999999999999854 799999999999999999999999998887665 44566665
Q ss_pred HHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-h--hHHHH--HHHHHHH--HHhhhc
Q 044153 100 IIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-K--TYRVF--KNIDVCS--GCQVLD 172 (262)
Q Consensus 100 ~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~--~~~~~--~~~~~~~--~~~~~~ 172 (262)
. .+++....||. +||++...+++.+...+.++.+|+-. +.|+ + ...++ ...++|. +.++++
T Consensus 124 ~-~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a~~~l~gw~A-----v~g~~~~~~~~l~l~~~~~~W~~~~d~iyA 191 (294)
T PRK12873 124 F-LALPPILIYPS------AKRWFAYPQAILALCWGFAVLIPWAA-----AEGSLNGGWPLLFCWLATLLWTFGFDTVYA 191 (294)
T ss_pred H-HHHHHHHHHHH------HHhccccchHHHHHHHHhHHHHHHHH-----HhCCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 56667889994 89999999999888877666666532 3443 2 12222 2345555 455999
Q ss_pred CCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCC--h
Q 044153 173 MPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSS--Q 250 (262)
Q Consensus 173 ~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~--~ 250 (262)
++|+|+|+++|+||+|+++|++ +......+..++.+.+..++.....++ +|.++....+..+.+|++.+|.+| +
T Consensus 192 ~qD~edD~~~Gv~slpv~~G~~-~~~~~~~~~~~~~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~ 267 (294)
T PRK12873 192 MADRRDDAKIGLNSSALSLGSN-ALKTVQICYFLTSIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSI 267 (294)
T ss_pred HHhHhhHHHcCCcccchhcChh-hHHHHHHHHHHHHHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccH
Confidence 9999999999999999999975 555667777777776777776655443 455666677788999999999887 4
Q ss_pred HHHHHHHH
Q 044153 251 AAILSFYR 258 (262)
Q Consensus 251 ~~~~~f~~ 258 (262)
++|.++|+
T Consensus 268 ~~c~~~F~ 275 (294)
T PRK12873 268 KTIGNHFS 275 (294)
T ss_pred HHHHHHHH
Confidence 88877765
No 25
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=99.97 E-value=2e-29 Score=224.17 Aligned_cols=217 Identities=14% Similarity=0.168 Sum_probs=149.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHH
Q 044153 28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIM-LRSPPLISTIIMWF 104 (262)
Q Consensus 28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~ 104 (262)
.++.++++++.++++|++|||+|+|+|++|+ |+||+|+|++|++|+..++..+..+++.++.. .|+.+.....+...
T Consensus 38 ~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 117 (279)
T PRK12869 38 LIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWF 117 (279)
T ss_pred HHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888999999999999999999999966 89999999999999999999999999888877 77665433333455
Q ss_pred HHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh--HHHHHHHHHHHHHh--hhcCCChhhh
Q 044153 105 VLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT--YRVFKNIDVCSGCQ--VLDMPDVDGD 179 (262)
Q Consensus 105 ~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~--~~~~~D~e~D 179 (262)
+..+.||. ++||+++.+.+..+...+.++..|+.. ..++ +. .......+++.... .++++|+|+|
T Consensus 118 ~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~a-----~~g~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd 187 (279)
T PRK12869 118 FYAVVYTI-----WLKPRTWLNIVIGGFAGNAAALAGYAS-----GTGSLDLEAVLLSFLIYLWTPGHIWSLALKYREDY 187 (279)
T ss_pred HHHhhhCc-----ccccCChHHHHHHHHHHHHHHHHHHHH-----HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhH
Confidence 67889995 689999876666655554444444432 2233 22 22223334444333 4577999999
Q ss_pred HHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH-HHHHHHHHhhcccCCChHHHHHHHH
Q 044153 180 KEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHST-LAFLLLQRARNVDVSSQAAILSFYR 258 (262)
Q Consensus 180 ~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~d~~~~~~~~~f~~ 258 (262)
+++|+||+|+++|+|++.+....+..+.......... ...++ +|.++..+ ....+.++.+..+.+|++.|++.|+
T Consensus 188 ~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~-~~~g~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~ 263 (279)
T PRK12869 188 RRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLYL-YYIGL---IGLILVAILSAALMATSIRALLNPTKEEAWKMFK 263 (279)
T ss_pred HHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHHH-hhccH---HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Confidence 9999999999999999988776666555544444333 22232 34333332 3334555555566566666766555
No 26
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=99.97 E-value=3.1e-29 Score=224.68 Aligned_cols=240 Identities=14% Similarity=0.094 Sum_probs=159.8
Q ss_pred hhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC-----CCCcccCCccCHHHHHHHHHHHHHHH
Q 044153 10 SLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK-----PDLPLASGDLSIGAGITITCTCLLMS 84 (262)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~-----~~RPl~sG~ls~~~a~~~~~~~~~l~ 84 (262)
+++|.....++++ ..+++++++.+++++++|.+|||+|+|.|+.|+ |+||+++|++|++|++....++..++
T Consensus 27 ~a~a~~~~~~f~~---~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~~r~l~~G~is~~~~~~~~~~~~~ia 103 (296)
T PRK05951 27 IAYGYYLFRSFDP---LLGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIA 103 (296)
T ss_pred HHHHHHhcCCcCH---HHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCCCCccccCCcCHHHHHHHHHHHHHHH
Confidence 3444333345664 445788899999999999999999966555544 78999999999999998877766665
Q ss_pred HHHH----HHhhhHHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcchhHH-HH
Q 044153 85 LAIG----IMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWKTYR-VF 159 (262)
Q Consensus 85 l~l~----~~~~~~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~ 159 (262)
+.++ ...+.+.+.++ +.+.+.++.|| .||+++|++++ |++.++..+|..+..|.+.. +....+..... -.
T Consensus 104 ~~~g~~l~~~~~~~~l~l~-~~~~~~~~~Yt--~~P~~lky~gl-Ge~~v~~~~g~~~vlg~~~~-~~~~~~~~~~~~sl 178 (296)
T PRK05951 104 LQLGWSLVLDRGIGAVTLA-LLGVFLWTCYM--GPPFFLKYRWL-GEHLVFYAWSHMLVMGLIYV-WLGNLSSPNLLAGV 178 (296)
T ss_pred HHHHHHHHHhccHHHHHHH-HHHHHHHHHHc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHHHH-HhCcccHHHHHHHH
Confidence 4332 22344444554 46888999999 59999998876 68877777775444443321 11111101111 11
Q ss_pred HHHHHHHHH-hhhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Q 044153 160 KNIDVCSGC-QVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLL 238 (262)
Q Consensus 160 ~~~~~~~~~-~~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 238 (262)
...+..... ..||+||+|+|++.|+||+|+++|+|++ ++...+...+|+..+.....+..++..+++++++-.....+
T Consensus 179 ~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~ 257 (296)
T PRK05951 179 PLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVILQILLIAILTPLISLWALLSLLVAYALC 257 (296)
T ss_pred HHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 122222333 3999999999999999999999999999 66666777777766665555544554445555544444555
Q ss_pred HHHhhcccCCChHHHHHHHH
Q 044153 239 LQRARNVDVSSQAAILSFYR 258 (262)
Q Consensus 239 ~~~~~~~d~~~~~~~~~f~~ 258 (262)
.++.++.|.++.+.|..++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~ 277 (296)
T PRK05951 258 LWQLRKFPPDPDEATVQLFM 277 (296)
T ss_pred HHHHhhCcccccHHHHHHHH
Confidence 55666666666666666654
No 27
>PLN00012 chlorophyll synthetase; Provisional
Probab=99.97 E-value=1.6e-29 Score=232.02 Aligned_cols=173 Identities=24% Similarity=0.288 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHH
Q 044153 28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIML-------RSPPLISTI 100 (262)
Q Consensus 28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~-------~~~~~~~~~ 100 (262)
.+++++++.+.++++|++|||+|+|+|++|+|+||+++|++++++++.....+..+++.+++.+ +++.+.++
T Consensus 125 ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~- 203 (375)
T PLN00012 125 IVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLA- 203 (375)
T ss_pred HHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH-
Confidence 4677888999999999999999999999999999999999999999987766666665555443 23334444
Q ss_pred HHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHH--HHHHHHHHHHH--hhhcCCC
Q 044153 101 IMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYR--VFKNIDVCSGC--QVLDMPD 175 (262)
Q Consensus 101 ~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~--~~~~~~~~~~~--~~~~~~D 175 (262)
+.+++++++|| .||+++||+++.+++..+..++.. +++. ++ ...+. +... .....+++... ..||+||
T Consensus 204 l~gi~l~~~YS--~pPl~lKr~~~~G~v~lG~~~~~l---p~~~-g~-a~~g~~s~~~illal~~~l~~lai~ivnd~~D 276 (375)
T PLN00012 204 LGGSLLSYIYS--APPLKLKQNGWIGNYALGASYISL---PWWA-GQ-ALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKS 276 (375)
T ss_pred HHHHHHhhhhc--CCchhhhHhccHhHHHHHHHHHHH---HHHH-HH-HHcCCCCHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 35777899999 599999999998887765555422 2111 11 23343 2222 22223334433 3999999
Q ss_pred hhhhHHcCCcccceeechHHHHHHHHHHHHHHH
Q 044153 176 VDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVY 208 (262)
Q Consensus 176 ~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~ 208 (262)
+|+|++.|+||+||++|++++++++..++.+..
T Consensus 277 ie~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~ 309 (375)
T PLN00012 277 IEGDRALGLQSLPVAFGVETAKWICVGSIDITQ 309 (375)
T ss_pred hhhHHHcCCcccceeechHHHHHHHHHHHHHHH
Confidence 999999999999999999999988765444443
No 28
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=99.97 E-value=5.3e-29 Score=221.30 Aligned_cols=167 Identities=24% Similarity=0.345 Sum_probs=129.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 044153 28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLS 107 (262)
Q Consensus 28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~ 107 (262)
.++++++.++.++++|++|||+|+|+|++|+|+||+++|++++++++.+..++.++|+.+++..|++++.+.. .+.+.+
T Consensus 39 ~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~-~~~~~~ 117 (277)
T PRK12883 39 LILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFAL-GAYVLM 117 (277)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 4556778888899999999999999999999999999999999999999999999999888888887776664 566789
Q ss_pred hhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh-HHHHHHHHHHHHH--hhhcCCChhhhHHcC
Q 044153 108 SAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT-YRVFKNIDVCSGC--QVLDMPDVDGDKEHG 183 (262)
Q Consensus 108 ~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~-~~~~~~~~~~~~~--~~~~~~D~e~D~~~G 183 (262)
+.||. ++||.+..+++..+...|..+..|+.. . +. +. .......+++.+. ..||+||+|+|+++|
T Consensus 118 ~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a-----~-~~~~~~~~~~~~~fl~~~~~~~~~~~~D~e~D~~~G 186 (277)
T PRK12883 118 FLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIA-----V-GRIGLAGYLAICAFLVNVAREIMKDIEDIEGDKAKG 186 (277)
T ss_pred HHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHH-----h-ccccHHHHHHHHHHHHHHHHHHHhhhhhhccHHHcC
Confidence 99996 789988888888777776433334321 1 22 11 1112223334333 389999999999999
Q ss_pred CcccceeechHHHHHHHHHHHHH
Q 044153 184 IQTLSIALGKEKVLWLGVYMLLV 206 (262)
Q Consensus 184 ~~Tlpv~~G~~~~~~~~~~l~~~ 206 (262)
+||+|+++|+|++++....+...
T Consensus 187 ~~Tlpv~~G~~~a~~~~~~~~~~ 209 (277)
T PRK12883 187 AKTLPIIIGKKRAAYIGAIFGVL 209 (277)
T ss_pred CcCcChHhcHHHHHHHHHHHHHH
Confidence 99999999999998876655433
No 29
>PRK13595 ubiA prenyltransferase; Provisional
Probab=99.97 E-value=6.5e-29 Score=219.63 Aligned_cols=175 Identities=21% Similarity=0.228 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHHHHHHH
Q 044153 29 LKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLM----SLAIGIMLRSPPLISTIIMWF 104 (262)
Q Consensus 29 ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l----~l~l~~~~~~~~~~~~~~~~~ 104 (262)
++++...+..+...|++|||+|+|+|++|+|+||+++|++|++|++.+...+... ++.+++..|+.++.+.. ++.
T Consensus 50 ~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~-v~~ 128 (292)
T PRK13595 50 PLLLYLTLPFNLLIYGLNDLADRETDAASPRKGGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLL-LYA 128 (292)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCCCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHH
Confidence 4555556677889999999999999999999999999999999998864444333 55666677776666654 677
Q ss_pred HHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcch-hHHHHH--HHHHHHHHhhhcCCChhhhHH
Q 044153 105 VLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWK-TYRVFK--NIDVCSGCQVLDMPDVDGDKE 181 (262)
Q Consensus 105 ~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~D~e~D~~ 181 (262)
++++.|| .||+|+|++|+.++++.. ..+.+ .++. ..+.|.+ .+..+. +.+...+..+++++|+|+||+
T Consensus 129 ~l~~~YS--~pPlRlK~rp~l~~l~~~-~~g~p--~~~~----~~~~g~~~~~~~l~a~~~w~~g~dii~ai~DiegDr~ 199 (292)
T PRK13595 129 ALFVGYS--LPPLRFKARPFLDGLSNA-AYALP--LALP----ALALGAPVPWPPLLALMAWSVGKHAFDAAQDIPADRA 199 (292)
T ss_pred HHHHHHc--cCccchhcCcchhHHHHH-HHHHH--HHHH----HHHcCCcchHHHHHHHHHHHHHHHHHHhccChHhHHH
Confidence 9999999 699999999999888763 33332 2221 1233432 222222 223334445999999999999
Q ss_pred cCCcccceeechHHHHHHHHHHHHHHHHHHHH
Q 044153 182 HGIQTLSIALGKEKVLWLGVYMLLVVYGALVI 213 (262)
Q Consensus 182 ~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~ 213 (262)
.|+||+|+++|+|++.+++..+.+++...+..
T Consensus 200 ~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~~~~ 231 (292)
T PRK13595 200 AGTRTVATTLGVRGTALYALAWFLLAGALLWP 231 (292)
T ss_pred cCCeechHHhCcHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988887766554443
No 30
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=99.97 E-value=1.3e-28 Score=220.64 Aligned_cols=221 Identities=15% Similarity=0.099 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHH
Q 044153 27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGIM-LRSPPLISTIIMW 103 (262)
Q Consensus 27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~ 103 (262)
..++++++.++.++++|++|||+|+|+|++|+ |+||+|+|++|++|++.++.++.++++.+++. .|+.+..+..+..
T Consensus 45 ~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~ 124 (296)
T PRK04375 45 LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGI 124 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 35678889999999999999999999999966 89999999999999999999999999887755 4655555543222
Q ss_pred HHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh--HHHHHHHHHHHH--HhhhcCCChhh
Q 044153 104 FVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT--YRVFKNIDVCSG--CQVLDMPDVDG 178 (262)
Q Consensus 104 ~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~~--~~~~~~~D~e~ 178 (262)
......||. ++||+++......+...+.++.+|+.. +.+. +. ...+...++|.. ...++++|+|+
T Consensus 125 ~~~~~~Ys~-----~lKr~~~~~~~v~~~~g~~~~l~g~~a-----~~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D 194 (296)
T PRK04375 125 FFYVVVYTL-----WLKRRTPQNIVIGGAAGAMPPLIGWAA-----VTGSLSWEALILFLIIFLWTPPHFWALAIFRKDD 194 (296)
T ss_pred HHHHHHhcc-----chhcCCccchHHHHHHHHhHHHHHHHH-----hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 335678995 699999754455444444444455532 2233 22 222223344432 33677999999
Q ss_pred hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHH
Q 044153 179 DKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILSFYR 258 (262)
Q Consensus 179 D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~ 258 (262)
|+++|+||+|+++|++++++.......+.....++.......++ .++..+.......+.++.+..+.+|++.|++.|+
T Consensus 195 ~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~ 272 (296)
T PRK04375 195 YAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVSLLPVLLGMAGL--LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFR 272 (296)
T ss_pred HHHcCCCccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHH
Confidence 99999999999999999887666555444433333322222222 1222233344555666666667677777766665
Q ss_pred h
Q 044153 259 F 259 (262)
Q Consensus 259 ~ 259 (262)
+
T Consensus 273 ~ 273 (296)
T PRK04375 273 Y 273 (296)
T ss_pred H
Confidence 3
No 31
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=99.97 E-value=1.7e-28 Score=218.33 Aligned_cols=220 Identities=15% Similarity=0.114 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHH
Q 044153 26 IGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIG-IMLRSPPLISTIIM 102 (262)
Q Consensus 26 ~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~-~~~~~~~~~~~~~~ 102 (262)
..+++++++.++.++++|++|||+|+|.|++|+ |+||+++|++|++|++.++.++.++|+.+. ...|+....++. .
T Consensus 35 ~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~-~ 113 (280)
T TIGR01473 35 PLLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGRISPREALAFGLLLGVLGVAILAAFVNPLAALLGL-F 113 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-H
Confidence 345678889999999999999999999999855 899999999999999999999999988844 446766666554 4
Q ss_pred HHH-HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh-H-HHHHHHHHHHHH--hhhcCCCh
Q 044153 103 WFV-LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT-Y-RVFKNIDVCSGC--QVLDMPDV 176 (262)
Q Consensus 103 ~~~-~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~-~-~~~~~~~~~~~~--~~~~~~D~ 176 (262)
+.+ ..+.||. .+||+++.+.+..+...+.++..|+.. ..++ +. . ......++|... ...+++|+
T Consensus 114 ~~~~~~~~Yt~-----~lKr~~~~~~~v~~~~g~~~~l~g~~a-----~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~~~ 183 (280)
T TIGR01473 114 GIFFYVIVYTI-----WLKRRTPQNTVIGGFAGAVPPLIGWAA-----VTGSISLGAWLLFAIIFLWQPPHFWALALKYK 183 (280)
T ss_pred HHHHHHhhcCh-----hhccCCchhHHHHHHHHHHHHHHHHHH-----hcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444 4889994 589999886666665544444445432 2233 22 2 222233334322 25568999
Q ss_pred hhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCC-ChHHHHH
Q 044153 177 DGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVS-SQAAILS 255 (262)
Q Consensus 177 e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~-~~~~~~~ 255 (262)
|+|+++|+||+|+++|+|++.+..............+.......++ .++..+.......+.++.+..|.+ |++.|++
T Consensus 184 ~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 261 (280)
T TIGR01473 184 DDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFLGGTGW--LYLIVATLLGALFLYLAFKFYRDPTDRKKARK 261 (280)
T ss_pred hhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 9999999999999999999887666555444443444333332232 222244444555666666666665 5666666
Q ss_pred HHH
Q 044153 256 FYR 258 (262)
Q Consensus 256 f~~ 258 (262)
.|+
T Consensus 262 ~f~ 264 (280)
T TIGR01473 262 LFK 264 (280)
T ss_pred HHH
Confidence 665
No 32
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.96 E-value=1.8e-27 Score=214.75 Aligned_cols=204 Identities=15% Similarity=0.120 Sum_probs=146.5
Q ss_pred hhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC----CCCcccCCccCHHHHHHHHHHHHHHH
Q 044153 9 VSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK----PDLPLASGDLSIGAGITITCTCLLMS 84 (262)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~----~~RPl~sG~ls~~~a~~~~~~~~~l~ 84 (262)
++++|......+++. .+++++++.++.|.++|.+|||+|++.|+.++ |+|++++|.+|+++++..+..+..++
T Consensus 25 G~a~a~~~~~~~~~~---~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~i~~~~ls~~~v~~~~~~~~~ia 101 (317)
T PRK13387 25 GTLFSLYVAKIFDWL---LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNGIGQHGLKPRNVLTVILLMYVVA 101 (317)
T ss_pred HHHHHHHhCCCccHH---HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcchhccCCCCHHHHHHHHHHHHHHH
Confidence 334444333456643 45778888899999999999999998766654 78999999999999998877776666
Q ss_pred HH----HHHHhhhHHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhh-HHHHHHHHHhhcchhH---
Q 044153 85 LA----IGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPL-GYFMHIQAQVRAWKTY--- 156 (262)
Q Consensus 85 l~----l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~--- 156 (262)
.+ +.+..|++.+.++ +.+.+.++.|| .||+++||+| +|++.++..+|..+.. ++|.+ +...+ ...
T Consensus 102 ~~~Gl~L~~~~g~~~l~ig-l~g~~~~~~Yt--~gP~~l~y~g-LGe~~v~i~~G~~~v~g~~yv~--t~~~~-~~~~~~ 174 (317)
T PRK13387 102 AILGVYLCMNTSWLLLVIG-LICFAIGILYT--GGPLPLSRMP-LGEIFSGLTMGFGIFLLAVYIN--TNTIT-IESLLF 174 (317)
T ss_pred HHHHHHHHHHhcHHHHHHH-HHHHHHhhhhc--CCCcccccCc-cHHHHHHHHHHHHHHHHHHHHh--cCCCc-hHHHHh
Confidence 55 5555565555555 46888999999 5999999999 5788887777755433 33332 11100 000
Q ss_pred -------------------HHHHHHHHHHHHh-hhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHh
Q 044153 157 -------------------RVFKNIDVCSGCQ-VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGA 216 (262)
Q Consensus 157 -------------------~~~~~~~~~~~~~-~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~ 216 (262)
..++..+...-.+ .||+||+|+|+++|+||+|+++|+|++.+++..+...+|+..+....
T Consensus 175 ~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a~~l~~~l~~~a~l~~~~~v~ 254 (317)
T PRK13387 175 QGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKGVVLFAILFYASYLAIAVIVL 254 (317)
T ss_pred cccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 0111222222223 99999999999999999999999999999999999999987776655
Q ss_pred hcchhH
Q 044153 217 SSPFLE 222 (262)
Q Consensus 217 ~~~~~~ 222 (262)
.+..|+
T Consensus 255 ~g~lp~ 260 (317)
T PRK13387 255 MGYISP 260 (317)
T ss_pred HHHhHH
Confidence 554454
No 33
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=99.96 E-value=1.9e-27 Score=212.90 Aligned_cols=189 Identities=16% Similarity=0.143 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhch--hhhhc--CCCCCcccCCccCHHHHHHHHHHHHHHHHHHH----HHhhhHHHH
Q 044153 26 IGLLKAIVPGLLVNIYEVGVNQLYDV--EIDKI--NKPDLPLASGDLSIGAGITITCTCLLMSLAIG----IMLRSPPLI 97 (262)
Q Consensus 26 ~~~ll~~l~~~l~~~a~~~iNd~~D~--~~D~~--n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~----~~~~~~~~~ 97 (262)
..+++++++.++.++++|.+|||+|+ |.|++ ++|+||+++|++|++|++..+..+..+++.++ ...+.+.+.
T Consensus 38 ~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~ 117 (293)
T PRK06080 38 LLALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLL 117 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34577888999999999999999999 46754 67999999999999999987777666554443 333554445
Q ss_pred HHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHHH--HHHHHHH--HHhhhc
Q 044153 98 STIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRVF--KNIDVCS--GCQVLD 172 (262)
Q Consensus 98 ~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~--~~~~~~~--~~~~~~ 172 (262)
.+ +.+.+.++.|| .||.++|++++ +++..+..+|.....+.+.. ..+. +...++ ...+++. ....||
T Consensus 118 ~~-~~~~~~~~~Ys--~~p~~~~~~gl-ge~~~~~~~G~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~n~ 189 (293)
T PRK06080 118 LG-LLCIAAAILYT--GGPKPYGYTGL-GELFVGVFFGLVIVLGTYYL----QAGTVDSAVFLPALPCGLLIGAVLLANN 189 (293)
T ss_pred HH-HHHHHHhhhhc--CCCCccCCCCc-HHHHHHHHHHHHHHHHHHHH----hcCCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 44 35778899999 59999999886 67777777775444332221 1122 211221 1122222 334999
Q ss_pred CCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 044153 173 MPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLE 222 (262)
Q Consensus 173 ~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 222 (262)
+||+|+|+++|+||+|+++|+|++++++..+..++++..+........++
T Consensus 190 ~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~ 239 (293)
T PRK06080 190 IRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLLALLGLASP 239 (293)
T ss_pred CCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 99999999999999999999999999999999999988777666554454
No 34
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=99.96 E-value=6.6e-27 Score=210.10 Aligned_cols=169 Identities=19% Similarity=0.237 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHH
Q 044153 28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAIGI-MLRSPPLISTIIMWF 104 (262)
Q Consensus 28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~-~~~~~~~~~~~~~~~ 104 (262)
.++++++..+.++++|++|||+|+|+|++++ ++||+|||++|++|++.++.++..+|+.+.. ..|+.......+...
T Consensus 49 ~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~ 128 (306)
T PRK13362 49 MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYV 128 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4567789999999999999999999998743 7999999999999999999999989887654 456655544433333
Q ss_pred HHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hh--HHHHHHHHHHHHHh--hhcCCChhhh
Q 044153 105 VLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KT--YRVFKNIDVCSGCQ--VLDMPDVDGD 179 (262)
Q Consensus 105 ~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~--~~~~~D~e~D 179 (262)
...+.||. ++||+++.+++..+...+.++.+|+.. +.|+ +. ...+...++|.... ..+++|+|||
T Consensus 129 ~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l~G~~a-----~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy 198 (306)
T PRK13362 129 VYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPVVGYCA-----VTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDY 198 (306)
T ss_pred HHHHHHhH-----HHhccCcHhHHHHHHHHHHHHHHHHHH-----HcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence 46789995 699999999998887777666666643 2333 22 22233334444333 5778899999
Q ss_pred HHcCCcccceeechHHHHHHHHHHHHH
Q 044153 180 KEHGIQTLSIALGKEKVLWLGVYMLLV 206 (262)
Q Consensus 180 ~~~G~~Tlpv~~G~~~~~~~~~~l~~~ 206 (262)
+++|+||+|+++|+|++++.......+
T Consensus 199 ~~aG~~~lpv~~G~~~t~~~~~~~~~~ 225 (306)
T PRK13362 199 AAAGIPVLPVARGIAKTKLHIVLYILV 225 (306)
T ss_pred HHCCCeeeceecChHHHHHHHHHHHHH
Confidence 999999999999999888754444333
No 35
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=99.95 E-value=2.6e-27 Score=206.93 Aligned_cols=162 Identities=28% Similarity=0.413 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhhc--CCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 044153 28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKI--NKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFV 105 (262)
Q Consensus 28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~--n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~ 105 (262)
.....+..++.+.++|.+||+.|+|+|++ |||+||+++|+++++++...+.++.++++.+++..+++.+.+.. .+.+
T Consensus 25 ~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~~~~l~l~l~~~~~~~~~~~~~-~~~~ 103 (257)
T PF01040_consen 25 FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALILLLLGLLLALLLGPWFLLILL-LGFL 103 (257)
T ss_pred HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHHHHHHHHHHHHhcCchhHHHHH-HHHH
Confidence 34555666689999999999999999999 89999999999999999999999999999888877877666654 5667
Q ss_pred HHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHHH--HHHHHHHHHh--hhcCCChhhhH
Q 044153 106 LSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRVF--KNIDVCSGCQ--VLDMPDVDGDK 180 (262)
Q Consensus 106 ~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~--~~~~~D~e~D~ 180 (262)
.++.|| ||+|+||+++.++++.+..++..+..+++. ..+. +..... ...++..+.. .+|++|+|+|+
T Consensus 104 ~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~D~ 175 (257)
T PF01040_consen 104 LGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA-----AGGDPPPPPFLLAIFFFLLIFAIMFFNDIRDIEGDR 175 (257)
T ss_pred HHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh-----cCCcccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 779999 888999999999999888877555555432 1122 122221 1112333332 77999999999
Q ss_pred HcCCcccceeechHHHHH
Q 044153 181 EHGIQTLSIALGKEKVLW 198 (262)
Q Consensus 181 ~~G~~Tlpv~~G~~~~~~ 198 (262)
+.|+||+|+++|+++++.
T Consensus 176 ~~g~~Tl~v~~G~~~~~~ 193 (257)
T PF01040_consen 176 KAGRRTLPVLLGEKKARY 193 (257)
T ss_pred HcCCcchHHHHHHHHHHH
Confidence 999999999999999987
No 36
>PRK13591 ubiA prenyltransferase; Provisional
Probab=99.95 E-value=1.5e-26 Score=205.54 Aligned_cols=179 Identities=21% Similarity=0.100 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcc
Q 044153 32 IVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYS 111 (262)
Q Consensus 32 ~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys 111 (262)
++.+.+...++|++|||+|+|+|++|+|+||.+ +++.+..++.+..++|+.+++..|++. ++ +.+.+.+++||
T Consensus 64 ~~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~-ll~~l~g~lYS 136 (307)
T PRK13591 64 CIAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LA-FLPFITGYLYS 136 (307)
T ss_pred HHHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHHHHHHHHhc
Confidence 445567788999999999999999999999986 888999999999999999998877532 33 35777899999
Q ss_pred CC----CCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc--hhHHHHHHHHHHHHH--hhhcCCChhhhHHcC
Q 044153 112 VD----LPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW--KTYRVFKNIDVCSGC--QVLDMPDVDGDKEHG 183 (262)
Q Consensus 112 ~~----~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~D~e~D~~~G 183 (262)
.| ..|+|+|+.+..|++.++..+|..+..+. + . ..+. +....+.......+. .+||++|+|||++.|
T Consensus 137 ~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~---g-~-~~~~~~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G 211 (307)
T PRK13591 137 KGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA---G-S-YCGSLIPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAG 211 (307)
T ss_pred CCCCCCCccccccCCCchhHHHHHHHHHHHHHHHH---H-h-hhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcC
Confidence 74 22458999999999999999885322110 0 0 1111 111111111112233 399999999999999
Q ss_pred CcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 044153 184 IQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLE 222 (262)
Q Consensus 184 ~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 222 (262)
+||+|+++|+++++++...+...+++..+.....+..++
T Consensus 212 ~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g~l~~ 250 (307)
T PRK13591 212 IKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFGVIAF 250 (307)
T ss_pred CeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999998888887776655544443
No 37
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=99.95 E-value=7.5e-26 Score=201.29 Aligned_cols=205 Identities=15% Similarity=0.074 Sum_probs=142.7
Q ss_pred hhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhcC--CCCCcccCCccCHHHHHHHHHHHHHHH
Q 044153 9 VSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVE--IDKIN--KPDLPLASGDLSIGAGITITCTCLLMS 84 (262)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~--~D~~n--~~~RPl~sG~ls~~~a~~~~~~~~~l~ 84 (262)
++++|... ..|+ +..+++++++.+++|.++|.+|||+|++ .|+.+ +|+|++++|.+++++++..+..+..++
T Consensus 15 G~ala~~~-~~f~---~~~~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~~~v~~~~~~~~~~a 90 (284)
T TIGR00751 15 GTALAAWL-HAFV---WLVALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITPREVKTALITSVALG 90 (284)
T ss_pred HHHHHHHc-CCcc---HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCHHHHHHHHHHHHHHH
Confidence 44444433 2555 4455788899999999999999999986 36542 488999999999999998777766654
Q ss_pred HH----HHHHhhh-----HHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcchh
Q 044153 85 LA----IGIMLRS-----PPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAWKT 155 (262)
Q Consensus 85 l~----l~~~~~~-----~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~~~ 155 (262)
.. +.+..++ +.+....+.+.+.++.|| .||+++|++++ |++.++..+|..+..|.+.. ++...+ ..
T Consensus 91 ~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt--~gP~~l~y~gL-GE~~v~i~~G~l~v~g~~yv-q~~~~~-~~ 165 (284)
T TIGR00751 91 ALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYT--VGSKPYGYAGL-GDISVLVFFGPLAVLGTQYL-QAHRVD-WV 165 (284)
T ss_pred HHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhc--CCCCccccCch-HHHHHHHHHHHHHHHHHHHH-hcCCCC-HH
Confidence 43 4443343 133333346778899999 59999999996 78888888886544443321 111111 11
Q ss_pred HH--HHHHHHHHHHHh-hhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 044153 156 YR--VFKNIDVCSGCQ-VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLE 222 (262)
Q Consensus 156 ~~--~~~~~~~~~~~~-~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 222 (262)
.. ..+..+.....+ .||+||+|+|+++|+||+||++|+|+++++...++..+|+..++.......++
T Consensus 166 ~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~p~ 235 (284)
T TIGR00751 166 GILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPISW 235 (284)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 11 112223333333 99999999999999999999999999999999998888877766554444444
No 38
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=1.3e-26 Score=206.63 Aligned_cols=190 Identities=24% Similarity=0.219 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 044153 28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIM-LRSPPLISTIIMWFVL 106 (262)
Q Consensus 28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~~~~ 106 (262)
....+++.++.+.++|++|||+|+|+|++|+|+||.++++...+....+..+...+++.+... .|++.+... +.+.+.
T Consensus 38 ~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~-~~~~~~ 116 (285)
T PRK12872 38 SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIF-IIPLIL 116 (285)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHH
Confidence 345677888999999999999999999999999998854433333333444444444444332 355555554 457778
Q ss_pred HhhccCCCCcc-cccccchhhhHHHHHHhhhhhhh-HHHHHHHHHhhcchhHHHHHHHHHHHHH--hhhcCCChhhhHHc
Q 044153 107 SSAYSVDLPFL-RWKRNPFLATMYGVLERGLAMPL-GYFMHIQAQVRAWKTYRVFKNIDVCSGC--QVLDMPDVDGDKEH 182 (262)
Q Consensus 107 ~~~Ys~~~pp~-rlKr~~~~~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~D~e~D~~~ 182 (262)
++.||. ||. ++||.|..++++.+..+|..+.. +++.. + ...+..........+...+. ..+|+||+|+|+++
T Consensus 117 ~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~~~~~-~-~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~ 192 (285)
T PRK12872 117 GILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILGVYYY-Q-LTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKS 192 (285)
T ss_pred HHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHHHHhc-c-cccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHc
Confidence 999994 554 68999999999999888854433 32221 0 00010111111222333333 39999999999999
Q ss_pred CCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 044153 183 GIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLE 222 (262)
Q Consensus 183 G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 222 (262)
|+||+|+++|+|+++++...+..+.++.++.....+..++
T Consensus 193 G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (285)
T PRK12872 193 GLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPL 232 (285)
T ss_pred CCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhHhhH
Confidence 9999999999999999999988888887776555443444
No 39
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=99.95 E-value=1.5e-25 Score=200.62 Aligned_cols=212 Identities=15% Similarity=0.160 Sum_probs=134.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchhhhhcC---------C--CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhH---
Q 044153 29 LKAIVPGLLVNIYEVGVNQLYDVEIDKIN---------K--PDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSP--- 94 (262)
Q Consensus 29 ll~~l~~~l~~~a~~~iNd~~D~~~D~~n---------~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~--- 94 (262)
++.++++.++.+++|++|||+|+|.|++| | ++||+++|++|++|++.+..++.++|+.++..++.+
T Consensus 44 ~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~ 123 (297)
T PRK12871 44 IKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSL 123 (297)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555556778999999999999864 2 589999999999999999999988888877665432
Q ss_pred -HHHHHHHHHHHHHhhccCCCCcccccccc---hhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHH--HHHHHHHHH
Q 044153 95 -PLISTIIMWFVLSSAYSVDLPFLRWKRNP---FLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRV--FKNIDVCSG 167 (262)
Q Consensus 95 -~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~---~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~--~~~~~~~~~ 167 (262)
.+.++ +.+.++++.|+. ||++ +.+.+..+...+.++..+ +. ..+. +...+ ....+++..
T Consensus 124 ~~~~l~-~~~~~~~~~Y~~-------~kr~~~~p~~~l~G~~~~~~~~~~g-~~-----~~g~~~~~~~ll~~~~~~w~~ 189 (297)
T PRK12871 124 YVFVIM-LYSYGIEAFYQV-------KKRNQKYPVAQLLGRTDFTLFPAAG-YL-----CYGQPDMTALLYMVFFYPWTM 189 (297)
T ss_pred HHHHHH-HHHHHHHHHHhc-------ccccccccHHHHHHHHHHHHHHHHH-HH-----HhCCCcHHHHHHHHHHHHHHH
Confidence 22222 345567788884 4431 122333322233222223 22 2233 22222 222344443
Q ss_pred H--hhhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 044153 168 C--QVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNV 245 (262)
Q Consensus 168 ~--~~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 245 (262)
. +.||++|+|+|++.|+||+|+++|++++++....+..+.+...+ +.....++ ..+..........+.++.+..
T Consensus 190 ~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l~~l~~~--~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~ 265 (297)
T PRK12871 190 AHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAI--FFLRELGP--IALYGFLAGFVLLAGANLYLW 265 (297)
T ss_pred HHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHHHHHHHH--HHHHHhhH--HHHHHHHHHHHHHHHHHHHHh
Confidence 3 39999999999999999999999999888665555544443332 22222222 223333355566788888888
Q ss_pred cCCChHHHHHHHH
Q 044153 246 DVSSQAAILSFYR 258 (262)
Q Consensus 246 d~~~~~~~~~f~~ 258 (262)
+.+|++.|.+-|+
T Consensus 266 ~~~~~~~~~~~f~ 278 (297)
T PRK12871 266 KEKSQDAGMKILP 278 (297)
T ss_pred cCCCHHHHHHHHH
Confidence 9999999877664
No 40
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=99.94 E-value=6.9e-25 Score=196.55 Aligned_cols=204 Identities=14% Similarity=0.080 Sum_probs=139.5
Q ss_pred hhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHH-
Q 044153 10 SLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVE--IDKINKPDLPLASGDLSIGAGITITCTCLLMSLA- 86 (262)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~--~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~- 86 (262)
+++|.....++++ ..+++++++.++.|.++|.+|||+|++ .|+. +++ ...++..++++.+..+..+..+++.
T Consensus 35 ~a~a~~~~~~f~~---~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-~~~~~~~~~~~v~~~~~~~~~~a~~~ 109 (304)
T PRK07419 35 TAWALGETGVFRL---DQFITFLLAAILILAWENLSNDVFDADTGIDKN-KFH-SVVNLTGNKSLVFWLANLFLLLGLLG 109 (304)
T ss_pred HHHHHHcCCCccH---HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-CcccccCcHHHHHHHHHHHHHHHHHH
Confidence 3344333235664 445788899999999999999999998 6763 222 2334555788888776666555443
Q ss_pred ---HHHHhhhHHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhh-HHHHHHHHHhhcchh-HHHHHH
Q 044153 87 ---IGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPL-GYFMHIQAQVRAWKT-YRVFKN 161 (262)
Q Consensus 87 ---l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~-~~~~~~ 161 (262)
+.+..|++.+.++ +.+.+.+++|| .||+++|++++ |++.++..+|..+.. ++|.. +..+.... ...+..
T Consensus 110 Gl~L~~~~g~~~l~ig-~~g~~~~~~YT--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~yv~--t~~~~~~~~~~sl~~ 183 (304)
T PRK07419 110 ILAIALQSDWTVLGLV-LLCCFLGYLYQ--GPPFRLGYQGL-GEPLCFLAFGPLAVAAALYSQ--TPSWSLIPLAASIIL 183 (304)
T ss_pred HHHHHHhhcHHHHHHH-HHHHHHhhecc--CCCcccCCCCc-hHHHHHHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHH
Confidence 4444455444444 46888999999 69999999996 788888888865444 33331 11111111 111222
Q ss_pred HHHHHHHh-hhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 044153 162 IDVCSGCQ-VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESK 224 (262)
Q Consensus 162 ~~~~~~~~-~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 224 (262)
.+...-.+ .||+||+|+|+++|+||+||++|+|++++++..+...+|+..+........|+..
T Consensus 184 gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~~~i~~v~~g~~p~~~ 247 (304)
T PRK07419 184 GLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYALELLPVLLGFWPWTT 247 (304)
T ss_pred HHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 23233333 9999999999999999999999999999999999999998887766655556543
No 41
>PLN02922 prenyltransferase
Probab=99.94 E-value=1.7e-24 Score=194.99 Aligned_cols=203 Identities=16% Similarity=0.114 Sum_probs=137.4
Q ss_pred hhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhcCCC--CCcccCCccCHHHHHHHHHHHHHHH
Q 044153 9 VSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVE--IDKINKP--DLPLASGDLSIGAGITITCTCLLMS 84 (262)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~--~D~~n~~--~RPl~sG~ls~~~a~~~~~~~~~l~ 84 (262)
++++|......+++. .++++++++++.|.++|.+|||+|++ .|+.++. .|+ .| |+++.+.....+.+++
T Consensus 37 G~a~A~~~~g~f~~~---~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~~~--~~--s~~~v~~~~~~~~~la 109 (315)
T PLN02922 37 GAAAAYLQTGLFDAR---RYGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVVNL--VG--SRRGVLAAAIGCLALG 109 (315)
T ss_pred HHHHHHHcCCCccHH---HHHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCCCc--cc--CHHHHHHHHHHHHHHH
Confidence 444554443456644 45788999999999999999999987 5664332 233 34 8999887766666555
Q ss_pred HHHHHHh----hhHHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhc-------c
Q 044153 85 LAIGIML----RSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRA-------W 153 (262)
Q Consensus 85 l~l~~~~----~~~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~-------~ 153 (262)
+...+.. +.|.++...+.+++.+++|| .||+++|++++ |++.++..+|..+..+.+.. ++...+ .
T Consensus 110 ~~g~~ll~~~~~~~~~l~iG~~g~~~~~~Yt--~gP~pl~y~gL-GE~~v~i~fG~l~v~g~y~~-~~~~~~~~~~~~~~ 185 (315)
T PLN02922 110 AAGLVWASLVAGNIRVILLLAAAILCGYVYQ--CPPFRLSYKGL-GEPLCFAAFGPLATTAFYLA-LASGAGGSEMAILP 185 (315)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHHh--cCCcccccCcc-hHHHHHHHHHHHHHHHHHHH-hccccccccccccc
Confidence 4322211 22434433357889999999 69999999997 68877888876544444332 111110 0
Q ss_pred -hhHHH---HHHHHHHHHHh-hhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhH
Q 044153 154 -KTYRV---FKNIDVCSGCQ-VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLE 222 (262)
Q Consensus 154 -~~~~~---~~~~~~~~~~~-~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~ 222 (262)
+...+ ++..+...-.+ .||+||+|+|+++|+||+||++|+|+++++..++...+|+..+........|+
T Consensus 186 ~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~ 259 (315)
T PLN02922 186 LTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPL 259 (315)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 11111 12223333333 99999999999999999999999999999999999999987777666555554
No 42
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=99.94 E-value=2e-24 Score=192.29 Aligned_cols=204 Identities=14% Similarity=0.056 Sum_probs=138.0
Q ss_pred hhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhh--hhcCCCCCcccCCccCHHHHHHHHHHHHHHHH-
Q 044153 9 VSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEI--DKINKPDLPLASGDLSIGAGITITCTCLLMSL- 85 (262)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~--D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l- 85 (262)
++++|......|++.. +++++++.++.|.++|.+|||+|++. |+.+.. ...++..++++.+....++..++.
T Consensus 21 G~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~~--~~~~~~~~~~~v~~~~~~~~~ia~~ 95 (285)
T TIGR02235 21 GTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKLH--SIVNLTGSRSLVFWLANFFLLIGLV 95 (285)
T ss_pred HHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCccccC--CcccccCcHHHHHHHHHHHHHHHHH
Confidence 4455544434576554 46788899999999999999999874 764321 122233467777766665555443
Q ss_pred ---HHHHHhhhHHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhh-HHHHHHHHHhhcchhHHH--H
Q 044153 86 ---AIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPL-GYFMHIQAQVRAWKTYRV--F 159 (262)
Q Consensus 86 ---~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~--~ 159 (262)
.+.+..+++.+.++ +.+++.++.|| .||+++|++++ |++.++..+|..+.. ++|.+ +..+. +.... +
T Consensus 96 ~g~~L~~~~~~~~l~lg-~~g~~~~~~Yt--~gP~~l~y~gL-GE~~v~l~~G~l~v~g~~yvq--t~~~~-~~~~l~sl 168 (285)
T TIGR02235 96 GIAALSWRWQITVLALV-GLCCFLGYLYQ--GPPFRLGYQGL-GEPICWLCFGPLAIAAALYAQ--SQSFS-LIPWKASI 168 (285)
T ss_pred HHHHHHHHhhHHHHHHH-HHHHHHHHhhc--CCCcccCCCCc-cHHHHHHHHHHHHHHHHHHHh--CCcCc-HHHHHHHH
Confidence 34444453333344 46888999999 69999999997 788888888865444 34332 11111 11111 2
Q ss_pred HHHHHHHHHh-hhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Q 044153 160 KNIDVCSGCQ-VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESK 224 (262)
Q Consensus 160 ~~~~~~~~~~-~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~ 224 (262)
+..+...-.+ .||+||+|+|+++|+||+||++|+|++.++...+...+|+..+........|+..
T Consensus 169 ~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~~p~~~ 234 (285)
T TIGR02235 169 LVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFLPWTT 234 (285)
T ss_pred HHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 2223333333 9999999999999999999999999999999999999999877766655555543
No 43
>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]
Probab=99.94 E-value=1.8e-26 Score=197.65 Aligned_cols=232 Identities=18% Similarity=0.144 Sum_probs=172.0
Q ss_pred hhhhhhhh-hcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhc--CCCCCcccCCccCHHHHHHHHHHHHH
Q 044153 6 MTSVSLLA-PQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKI--NKPDLPLASGDLSIGAGITITCTCLL 82 (262)
Q Consensus 6 ~~~~~~~~-~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~--n~~~RPl~sG~ls~~~a~~~~~~~~~ 82 (262)
+||++..| +++.+++.- +-++-.+.+++++++|.|||..|+|+|++ +.+.||++||++|++++..+-.....
T Consensus 87 tWSIamaAdag~~p~~~m-----L~LFG~GAllMRgAGCtINDlwDkdlD~KVeRtklRPlAsG~ls~~qaI~fL~~ql~ 161 (353)
T KOG1381|consen 87 TWSIAMAADAGLLPSIKM-----LALFGVGALLMRGAGCTINDLWDKDLDAKVERTKLRPLASGSLSPRQAIGFLGAQLS 161 (353)
T ss_pred HHHHHhccCCCccchhHH-----HHHhcccHHHhccCCceehhhhhhhhhhhHhhhcccccccCCcchhHHHHHHHHHHH
Confidence 46666655 233333332 23567889999999999999999999988 45899999999999999999999999
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc--hhHHHHH
Q 044153 83 MSLAIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW--KTYRVFK 160 (262)
Q Consensus 83 l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~ 160 (262)
+|+.+...+|+.+..++. .++...+.|+. +||.++..++..+..+.....+|+- +.-|+ |...+-+
T Consensus 162 ~gLgiLlqLn~ysi~lg~-~sl~~v~~ypl------~kr~TY~pq~vLgltfnwGAllGw~-----A~~g~~~~s~~~pl 229 (353)
T KOG1381|consen 162 LGLGILLQLNWYSIALGA-SSLALVITYPL------MKRFTYWPQLVLGLTFNWGALLGWC-----ALKGSLSPSAVLPL 229 (353)
T ss_pred HhHHHHHhccHHHHHhcc-cccccEEEeeh------hhhcchhHHHHHhhhcchhhhhcch-----hhcCccChhhhhHH
Confidence 999999899988777663 57778889995 8999998877765443322233432 23343 2222222
Q ss_pred H----HHHHHHHhhhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHH
Q 044153 161 N----IDVCSGCQVLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAF 236 (262)
Q Consensus 161 ~----~~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 236 (262)
+ .+...++++|++||.++|.+.|+|+.+.++|++...+ ...+-......+..+|......+ .+..+..+.+.
T Consensus 230 Yls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~w-l~gf~a~~ia~La~aG~~s~q~~---pyy~~lg~~~~ 305 (353)
T KOG1381|consen 230 YLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPW-LSGFGAAQIASLAAAGIASDQTW---PYYAALGAVAA 305 (353)
T ss_pred HHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchH-HhhhhHHHHHHHHHhhhccCCCc---hHHHHHHHHHH
Confidence 2 2444566799999999999999999999999886554 45555666666667777666544 23344677788
Q ss_pred HHHHHhhcccCCChHHHHHHHH
Q 044153 237 LLLQRARNVDVSSQAAILSFYR 258 (262)
Q Consensus 237 ~l~~~~~~~d~~~~~~~~~f~~ 258 (262)
++.+|..++|.+|+++|+..|.
T Consensus 306 ~L~~~i~~vdiDnp~dC~k~f~ 327 (353)
T KOG1381|consen 306 RLGSQIYKVDIDNPSDCWKKFK 327 (353)
T ss_pred HHHhheeeeecCChHHHHHHHH
Confidence 9999999999999999998875
No 44
>PRK13592 ubiA prenyltransferase; Provisional
Probab=99.93 E-value=5e-25 Score=194.22 Aligned_cols=177 Identities=12% Similarity=0.029 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 044153 25 FIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTIIMWF 104 (262)
Q Consensus 25 ~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~~~~ 104 (262)
..+.++.++..++..+++|++|||+|+|+||+|+|+||+|||++|+++++.++.++.++++.+.... ... +...
T Consensus 45 ~~~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~-i~~~ 118 (299)
T PRK13592 45 GIQEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNN-VGWF 118 (299)
T ss_pred chHHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHH-HHHH
Confidence 3456677777888999999999999999999999999999999999999999988877776666544 111 1233
Q ss_pred HHHhhc-----cCCCCcccccccchhhhHHHHHHhhhhhhhH--HHHHH-HHHhhcchh-----HHHHHHHHHHHHHh--
Q 044153 105 VLSSAY-----SVDLPFLRWKRNPFLATMYGVLERGLAMPLG--YFMHI-QAQVRAWKT-----YRVFKNIDVCSGCQ-- 169 (262)
Q Consensus 105 ~~~~~Y-----s~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g--~~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~-- 169 (262)
+..+.| +. ++||.++.|++.++...+.++..+ ++... .....+.+. .......|+..+++
T Consensus 119 ~i~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~~~~~~~l~l~afl~~l~rEI 193 (299)
T PRK13592 119 LFLYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYFPSLIWEV 193 (299)
T ss_pred HHHHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 445566 76 799999999998887777544222 22110 011222211 12223455556665
Q ss_pred hhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHH
Q 044153 170 VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIA 214 (262)
Q Consensus 170 ~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~ 214 (262)
.+|++| |||++ |.+|+|+.+|+|++.++...+..++.+...+.
T Consensus 194 ~KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~lp 236 (299)
T PRK13592 194 CRKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILTNFAL 236 (299)
T ss_pred HHhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHHHhhHH
Confidence 999999 88886 59999999999999999888877766654443
No 45
>PLN02776 prenyltransferase
Probab=99.93 E-value=1.8e-23 Score=188.79 Aligned_cols=217 Identities=15% Similarity=0.064 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC--CCCcccCCccCHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHH
Q 044153 27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK--PDLPLASGDLSIGAGITITCTCLLMSLAI-GIMLRSPPLISTIIMW 103 (262)
Q Consensus 27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~--~~RPl~sG~ls~~~a~~~~~~~~~l~l~l-~~~~~~~~~~~~~~~~ 103 (262)
.+++++++++++++++|++||++|+|+|++++ ++||+|+|++|+++++.++.++.++|+.+ .+..|+.+..++.+..
T Consensus 30 ~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~ 109 (341)
T PLN02776 30 GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNI 109 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45677899999999999999999999998854 89999999999999999999999888854 4567877777664323
Q ss_pred HHHHhhccCCCCcccccccchhhhHHHHHHhh-hhhhhHHHHHHHHHhhcc-h--hHHHHHHHHHHHH--HhhhcCCChh
Q 044153 104 FVLSSAYSVDLPFLRWKRNPFLATMYGVLERG-LAMPLGYFMHIQAQVRAW-K--TYRVFKNIDVCSG--CQVLDMPDVD 177 (262)
Q Consensus 104 ~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~-~~~~~g~~~~~~~~~~~~-~--~~~~~~~~~~~~~--~~~~~~~D~e 177 (262)
.+....||. +||++... ...+...| .++.+||.. +.|. + .+.++...++|.. .....++|+|
T Consensus 110 ~ly~~vYt~------lKR~t~~~-~~lG~~~Ga~ppL~Gw~A-----vtg~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~d 177 (341)
T PLN02776 110 LLYAFVYTP------LKQIHPAN-TWVGAVVGAIPPLMGWAA-----ASGQLDAGAMVLAAALYFWQMPHFMALAYMCRD 177 (341)
T ss_pred HHHHHHHHh------HccCCchh-HHHHHHHHHHHHHHHHHH-----HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 344679994 89999875 45555555 455556532 3343 2 2333444455554 3466677888
Q ss_pred hhHHcCCcccceee--chHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcccCCChHHHHH
Q 044153 178 GDKEHGIQTLSIAL--GKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNVDVSSQAAILS 255 (262)
Q Consensus 178 ~D~~~G~~Tlpv~~--G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~ 255 (262)
+|+++|+|++|+.- |++.++......+.+..+.++.... ... ..+++..+.......+.+..+-.+.+|++..++
T Consensus 178 Dy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~-g~~--~~~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~ 254 (341)
T PLN02776 178 DYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDW-GVT--SSPFALEAALLTAYLAASAASFYREPTNANARK 254 (341)
T ss_pred HHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 99999999999976 4554544433333222222222111 111 122344444444555666666565556555544
Q ss_pred HHH
Q 044153 256 FYR 258 (262)
Q Consensus 256 f~~ 258 (262)
.|.
T Consensus 255 ~F~ 257 (341)
T PLN02776 255 MFH 257 (341)
T ss_pred HHH
Confidence 443
No 46
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=99.92 E-value=2e-23 Score=185.06 Aligned_cols=167 Identities=19% Similarity=0.155 Sum_probs=109.8
Q ss_pred HHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHH----HH-HHHHHHHHhhhHHHHHHHHHHHHHHhhccC
Q 044153 38 VNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTC----LL-MSLAIGIMLRSPPLISTIIMWFVLSSAYSV 112 (262)
Q Consensus 38 ~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~----~~-l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~ 112 (262)
.+.+.|++|||+|+|.|+.|++++.. .|.++++|.+...... .. .++.+....+++.+.++ ..+++.++.||
T Consensus 46 ~n~am~~~Ndy~D~~~d~dn~r~~g~-~g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~-~~ai~~~~~YS- 122 (282)
T PRK13105 46 YNLAMYGINDVFDYESDLRNPRKGGV-EGAVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVL-AVSVFAVVAYS- 122 (282)
T ss_pred HHHHHHhhhhhhhhhcCCCCcccCCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhc-
Confidence 34444677999999999999765443 4889999884432222 22 23333333344444444 47888999999
Q ss_pred CCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHHHHH--HHHHH--HHhhhcCCChhhhHHcCCccc
Q 044153 113 DLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRVFKN--IDVCS--GCQVLDMPDVDGDKEHGIQTL 187 (262)
Q Consensus 113 ~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~--~~~~~--~~~~~~~~D~e~D~~~G~~Tl 187 (262)
.||.|+|++|+.++++...........|.+. ..+. +...+++. .+++. +..+||+||+|+||+.|+||+
T Consensus 123 -~~p~rlk~~gl~d~~t~~~~f~~~~v~G~~~-----~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tl 196 (282)
T PRK13105 123 -APGLRFKERPFLDSLTSSTHFVSPALYGLVL-----AGAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASI 196 (282)
T ss_pred -CCCccccccchHHHHHHHHHHHHHHHHHHHH-----hhccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccc
Confidence 5999999999988754433332122222211 1111 22112211 22222 334999999999999999999
Q ss_pred ceeechHHHHHHHHHHHHHHHHHHHH
Q 044153 188 SIALGKEKVLWLGVYMLLVVYGALVI 213 (262)
Q Consensus 188 pv~~G~~~~~~~~~~l~~~~~~~~l~ 213 (262)
|+++|+|++.+++..++.++++..+.
T Consensus 197 pv~lG~~~a~~~~~~l~~~a~~~~~~ 222 (282)
T PRK13105 197 ATVLGARRTVRLAVGLYAAAAVLMLA 222 (282)
T ss_pred hHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888876664
No 47
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=99.91 E-value=2.8e-22 Score=178.07 Aligned_cols=167 Identities=21% Similarity=0.293 Sum_probs=104.0
Q ss_pred HHHHHHHhhhhhchhhhhcCCCCCcccCCccCH--HHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhccCCC
Q 044153 38 VNIYEVGVNQLYDVEIDKINKPDLPLASGDLSI--GAGIT-ITCTCLLMSLAIGIMLRSPPLISTIIMWFVLSSAYSVDL 114 (262)
Q Consensus 38 ~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~--~~a~~-~~~~~~~l~l~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~ 114 (262)
.+...|++|||+|+|+|+.|+++|. ++...+ +.+.. .......+++.+....++...... +.+++.++.|| .
T Consensus 57 ~Nl~~y~iND~~D~D~Dr~~prk~~--~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~~~~~~~~l-l~~i~~~~~YS--~ 131 (282)
T PRK12875 57 ANVFLYGVNDVFDADTDELNPKKDR--EREVRYRGDRRVLVAVALSGALALAFLLVLPPAAWPAL-LAFLVLSVEYS--A 131 (282)
T ss_pred HHHHHhcchhhhhhhccccCCCccC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHc--C
Confidence 3455677999999999999886653 121221 11111 222223344444434343323332 45778899999 6
Q ss_pred CcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHHHHHHHHHHHH--hhhcCCChhhhHHcCCcccceee
Q 044153 115 PFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRVFKNIDVCSGC--QVLDMPDVDGDKEHGIQTLSIAL 191 (262)
Q Consensus 115 pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~D~e~D~~~G~~Tlpv~~ 191 (262)
||+|+|++|+.+..+.+.. ..++..+++. ..+. ++..++...+++... .+|++||+|+|+++|+||+|+++
T Consensus 132 pP~rlk~~p~~~~~~~g~~-~~~~~~~y~~-----~tg~~~~~~l~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~l 205 (282)
T PRK12875 132 PPLRFKTTPVLDSLSNGLY-ILPGVAAYAL-----VSGSLPPLLAVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVL 205 (282)
T ss_pred CCccchhccHHHHHHHHHH-HHHHHHHHHH-----HcCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhc
Confidence 9999999998765443321 1222334332 2233 333333333344433 38999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Q 044153 192 GKEKVLWLGVYMLLVVYGALVIAG 215 (262)
Q Consensus 192 G~~~~~~~~~~l~~~~~~~~l~~~ 215 (262)
|+|++++++..+..++.......+
T Consensus 206 G~~~a~~~~~~~~~~a~~~~~~~~ 229 (282)
T PRK12875 206 GERRTYAYCAACWLLAAAAFAAVD 229 (282)
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999888888777766666544
No 48
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=99.91 E-value=5.6e-22 Score=174.85 Aligned_cols=204 Identities=14% Similarity=0.096 Sum_probs=138.7
Q ss_pred hhhhhhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchh--hhhc----CCCCCcccCCccCHHHHHHHHHHHH
Q 044153 8 SVSLLAPQQFADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVE--IDKI----NKPDLPLASGDLSIGAGITITCTCL 81 (262)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~--~D~~----n~~~RPl~sG~ls~~~a~~~~~~~~ 81 (262)
.++++|...... ..++.++++++++.+.+..+|..|||+|++ .|.+ ++.++-+.+.+++++..+.....+.
T Consensus 29 ~G~a~A~~~~~~---f~~~~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~~~g~I~~~~~k~~~~l~l~l~~~ 105 (303)
T COG1575 29 VGTALAFWYGKS---FNLLVALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLKQSGLIVRQSMKPALILSLALFLL 105 (303)
T ss_pred HHHHHHHHHccc---hHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCccccccceeecccCCHHHHHHHHHHHH
Confidence 355555555333 346778899999999999999999999986 5643 2344455556666776665554444
Q ss_pred HHHH----HHHHHhhhHHHHHHHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhh-hhhHHHHHHHHHhhcchhH
Q 044153 82 LMSL----AIGIMLRSPPLISTIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLA-MPLGYFMHIQAQVRAWKTY 156 (262)
Q Consensus 82 ~l~l----~l~~~~~~~~~~~~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~ 156 (262)
..+. .+....++. ++....++.+.++.|+. +|+++++.|+ |++.++..+|.. +..++|.+ + +.-.+
T Consensus 106 ~g~~llg~~~~~~s~~~-~l~lG~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vffG~l~v~g~~yiq--t---~~~~~ 176 (303)
T COG1575 106 AGLALLGVILAALSDWL-VLLLGLLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFFGPLIVLGAYYIQ--T---GRLSW 176 (303)
T ss_pred HHHHHHHHHHHHHhhhH-HHHHHHHHHHheeeecc--CCcCcccCCH-HHHHHHHHHHHHHHHHHHHHh--c---ccchH
Confidence 3333 233333444 44444578899999994 8989999997 788888888864 34455442 1 11111
Q ss_pred HHH----HHHHHHHHHh-hhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHH
Q 044153 157 RVF----KNIDVCSGCQ-VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLES 223 (262)
Q Consensus 157 ~~~----~~~~~~~~~~-~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~ 223 (262)
..+ .........+ .||+||+|+|+|+|++|+||++|+++++.+...++..+|+..++.......++.
T Consensus 177 ~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a~l~~~~~~i~~~~~~~ 248 (303)
T COG1575 177 AILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVAYLAIVIFVILGLFPVW 248 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 121 1222233333 999999999999999999999999999999999998888877775555544443
No 49
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.1e-22 Score=177.12 Aligned_cols=219 Identities=14% Similarity=0.146 Sum_probs=150.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhchhhhhc--CCCCCcccCCccCHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHH
Q 044153 25 FIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKI--NKPDLPLASGDLSIGAGITITCTCLLMSLAIG-IMLRSPPLISTII 101 (262)
Q Consensus 25 ~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~--n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~-~~~~~~~~~~~~~ 101 (262)
....+++++++.+..+++|++|+++|+|+|++ ++++||+++|+++++|++.++.++.++|+... +..|+.+..+.+.
T Consensus 51 ~~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~ 130 (304)
T COG0109 51 PLLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLF 130 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457789999999999999999999999999 56899999999999999999999999999887 5567666665555
Q ss_pred HHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc---hhHHHHHHHHHHH----HHh-hhcC
Q 044153 102 MWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW---KTYRVFKNIDVCS----GCQ-VLDM 173 (262)
Q Consensus 102 ~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~----~~~-~~~~ 173 (262)
...+..+.||. .+||++..+.+.++...+.++.+||. ++.|+ ..+.++.+.|+|. +.+ .+-.
T Consensus 131 gi~~Yv~vYT~-----~lKR~T~~NiviGg~aGa~PpliGwa-----Avtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~ 200 (304)
T COG0109 131 GIFFYVVVYTL-----WLKRRTPQNIVIGGFAGAMPPLIGWA-----AVTGSISLGAILLFAIIFLWTPPHFWALALKYK 200 (304)
T ss_pred HHHHHhhhhhh-----hccCCcccceeeeeccccccccceee-----eeeCCCCchHHHHHHHHHHhccHHHHHHHHHHH
Confidence 55567899997 79999987666666655566667763 25555 2344556667775 444 5555
Q ss_pred CChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHhhcc-cCCChHH
Q 044153 174 PDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSPFLESKLITIIGHSTLAFLLLQRARNV-DVSSQAA 252 (262)
Q Consensus 174 ~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-d~~~~~~ 252 (262)
+|+ +++|++.+|++-|++.+++.......+.....+.....+ ..+.+|.+...++...+.....+. .-+|++.
T Consensus 201 ~DY---~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~~~~~g---~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~ 274 (304)
T COG0109 201 DDY---KAAGIPMLPVVKGERRTKRQILLYTLALAPVSLLLALLG---YVGYLYLVVATLLGAWFLALAWKLYRKDDRKW 274 (304)
T ss_pred HHH---HHcCCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHHHHHHHHhCccHHH
Confidence 566 899999999999999998765544444443333333322 222233333333333333333322 2256666
Q ss_pred HHHHHHh
Q 044153 253 ILSFYRF 259 (262)
Q Consensus 253 ~~~f~~~ 259 (262)
.++.|.+
T Consensus 275 A~klF~~ 281 (304)
T COG0109 275 ARKLFKY 281 (304)
T ss_pred HHHHHHH
Confidence 6666554
No 50
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=99.82 E-value=1.4e-18 Score=155.03 Aligned_cols=112 Identities=28% Similarity=0.346 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcC--CCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 044153 24 FFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKIN--KPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLISTII 101 (262)
Q Consensus 24 ~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n--~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~~~~ 101 (262)
.+...++.+++.++.++++|++||++|+|+||+| ||+||++||++|+++++.++.++..+|+.+++..|+...... .
T Consensus 44 ~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~-~ 122 (295)
T PRK12324 44 ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVL-L 122 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 3555667777788899999999999999999995 799999999999999999999999999988888887665554 4
Q ss_pred HHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhH
Q 044153 102 MWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLG 141 (262)
Q Consensus 102 ~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g 141 (262)
.+.+..+.||. ++||++..+.+..+..++..+..|
T Consensus 123 ~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~G 157 (295)
T PRK12324 123 VYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIAG 157 (295)
T ss_pred HHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHHH
Confidence 67788899996 899999998888877666444333
No 51
>PRK08238 hypothetical protein; Validated
Probab=99.81 E-value=4e-18 Score=161.62 Aligned_cols=152 Identities=22% Similarity=0.234 Sum_probs=116.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcC--CCCCcccCCccCHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 044153 21 TPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKIN--KPDLPLASGDLSIGAGITITCTCLLMSLAIGIMLRSPPLIS 98 (262)
Q Consensus 21 ~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n--~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~~~~~~~ 98 (262)
++..+...++.+++..++.+++|++||++|+|+||++ ||+||++||++|+++++.++.++.++|+.+++.+|+..+..
T Consensus 221 ~~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~ 300 (479)
T PRK08238 221 DLQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLV 300 (479)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3444666778888888999999999999999999996 69999999999999999999999999999998888744444
Q ss_pred HHHHHHHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc-hhHHHHHHH--HHHHHHhhhcCCC
Q 044153 99 TIIMWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW-KTYRVFKNI--DVCSGCQVLDMPD 175 (262)
Q Consensus 99 ~~~~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~D 175 (262)
.+.++++..+||. ++||+++.++++.+..++..+..|... .+. ++.+++... +.++....|...|
T Consensus 301 -~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~~~G~~a------~~~~~s~wll~~~~~~~l~la~~KR~~E 368 (479)
T PRK08238 301 -LLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRIIAGAAA------IGVALSFWLLAFSMFFFLSLALVKRYTE 368 (479)
T ss_pred -HHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHHHHHHHH------hccCHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3467788999996 799999999988887776555555322 122 222332222 2233444888888
Q ss_pred hhhhHHcCC
Q 044153 176 VDGDKEHGI 184 (262)
Q Consensus 176 ~e~D~~~G~ 184 (262)
.+++++.|.
T Consensus 369 l~~~~~~~~ 377 (479)
T PRK08238 369 LRRALQRGK 377 (479)
T ss_pred HHHHHhcCC
Confidence 888888876
No 52
>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]
Probab=99.13 E-value=1.7e-10 Score=101.96 Aligned_cols=168 Identities=14% Similarity=0.147 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhhc--CCCCCcccCCccCHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHH
Q 044153 27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKI--NKPDLPLASGDLSIGAGITITCTCLLMSLAIGIM-LRSPPLISTIIMW 103 (262)
Q Consensus 27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~--n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~-~~~~~~~~~~~~~ 103 (262)
.++.+.+|..+..++.|++||+++.+.|++ +++.||+++|++++.+|..++.+....|..+.++ .|+....++..=.
T Consensus 128 ~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rplv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni 207 (409)
T KOG1380|consen 128 TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRPLVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNI 207 (409)
T ss_pred hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccccccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcch
Confidence 456789999999999999999999999998 4589999999999999999999888888776655 5665555543223
Q ss_pred HHHHhhccCCCCcccccccchhhhHHHHHHhhhhhhhHHHHHHHHHhhcc--hhHHHHH-HHHHHHH----Hh-hhcCCC
Q 044153 104 FVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLAMPLGYFMHIQAQVRAW--KTYRVFK-NIDVCSG----CQ-VLDMPD 175 (262)
Q Consensus 104 ~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~-~~~~~~~----~~-~~~~~D 175 (262)
.+.+.+|+ .+||......=.+++..+++..+||-. ..|. +..+++. +++.|-| ++ .+--.|
T Consensus 208 ~LY~~vYT------PlKrihiinTWvGavVGAIPPLMGwAA-----asg~l~~ga~iLa~~LyaWQfPHFnaLS~~lR~D 276 (409)
T KOG1380|consen 208 FLYAGVYT------PLKRIHIINTWVGAVVGAIPPLMGWAA-----ASGLLDPGAMILAGILYAWQFPHFNALSWNLRND 276 (409)
T ss_pred heeecccc------chhhhhhhhhHHHHHhccCCccchhhh-----hccCCCccHHHHHHHHHHhcccchhhhhhhhchh
Confidence 34678899 589976543222222223344566532 2232 2222222 2333432 12 222235
Q ss_pred hhhhHHcCCcccceee---chHHHHHHHHHHHHHHH
Q 044153 176 VDGDKEHGIQTLSIAL---GKEKVLWLGVYMLLVVY 208 (262)
Q Consensus 176 ~e~D~~~G~~Tlpv~~---G~~~~~~~~~~l~~~~~ 208 (262)
+ ++.|.|.+++.= -++.+.+....++.++|
T Consensus 277 Y---s~~GY~Mma~~np~l~rr~alr~s~a~~~L~~ 309 (409)
T KOG1380|consen 277 Y---SKAGYRMMAVTNPGLCRRVALRYSLAFLPLSY 309 (409)
T ss_pred h---hhccEEEEEeeccchhhHHHHHHHHHHhhhhc
Confidence 5 899999998863 34445565555555544
No 53
>KOG4581 consensus Predicted membrane protein [Function unknown]
Probab=98.88 E-value=1e-09 Score=92.95 Aligned_cols=181 Identities=18% Similarity=0.125 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhch--hhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHH---HHHHHhhhH---HHHHHHH
Q 044153 30 KAIVPGLLVNIYEVGVNQLYDV--EIDKINKPDLPLASGDLSIGAGITITCTCLLMSL---AIGIMLRSP---PLISTII 101 (262)
Q Consensus 30 l~~l~~~l~~~a~~~iNd~~D~--~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l---~l~~~~~~~---~~~~~~~ 101 (262)
++-++.+.++.++|..|.|+|. .+|++...+|.++.-.+.+.+...+..++...|. +..+.+++. -+.+...
T Consensus 103 l~a~avlavh~agnlvntyfdf~kgid~kkaddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyf 182 (359)
T KOG4581|consen 103 LCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYF 182 (359)
T ss_pred HHHhhheeeecccchhhhhhhhhhccccccccchhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhc
Confidence 4455667789999999999997 4888888899999999999998888777766543 222233321 1222223
Q ss_pred HHHHHHhhccCCCCcccccccchhhhHHHHHHhhhh-hhhHHHHHHHHHhhcchhHHHHHHHHHHH-HHh-hhcCCChhh
Q 044153 102 MWFVLSSAYSVDLPFLRWKRNPFLATMYGVLERGLA-MPLGYFMHIQAQVRAWKTYRVFKNIDVCS-GCQ-VLDMPDVDG 178 (262)
Q Consensus 102 ~~~~~~~~Ys~~~pp~rlKr~~~~~~l~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~D~e~ 178 (262)
.++-.+.+|+.| +.+|+..+ +.++..+.+|.+ +.+++-. |.......+...-....+.+ ..+ .|+.||.|.
T Consensus 183 ggls~sflytgg---igfkyial-gdliili~fgpiavlfaf~~--q~g~l~~~~l~yaiplalnteailhsnntrd~dn 256 (359)
T KOG4581|consen 183 GGLSGSFLYTGG---IGFKYIAL-GDLIILILFGPIAVLFAFAI--QTGHLAIFPLGYAIPLALNTEAILHSNNTRDADN 256 (359)
T ss_pred cCcccceeEecc---cceEEEec-cCEEEEEeechHHHHHHHHH--hcCceeEEeehheeeeccchHHHhccCCCccccc
Confidence 455678899964 47787765 344333333321 1122211 11000000100000011122 222 899999999
Q ss_pred hHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHh
Q 044153 179 DKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGA 216 (262)
Q Consensus 179 D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~ 216 (262)
||++|+-|+++.+|+..+-.++..++.+.|.+..+.+.
T Consensus 257 dr~agivtlailig~t~s~ily~~llf~py~lf~i~~~ 294 (359)
T KOG4581|consen 257 DREAGIVTLAILIGPTASHILYAMLLFAPYLLFFIFAL 294 (359)
T ss_pred ccccCeEEEEEeecccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998887888788888876665544
No 54
>PRK13591 ubiA prenyltransferase; Provisional
Probab=94.23 E-value=0.3 Score=44.14 Aligned_cols=66 Identities=20% Similarity=0.275 Sum_probs=37.1
Q ss_pred HhhhhhchhhhhcCC-CCCcccCCccCHHHHHHHHHHHHH-------HHHHHHHHh-hhHHHHHHHHHHHHHHhhccC
Q 044153 44 GVNQLYDVEIDKINK-PDLPLASGDLSIGAGITITCTCLL-------MSLAIGIML-RSPPLISTIIMWFVLSSAYSV 112 (262)
Q Consensus 44 ~iNd~~D~~~D~~n~-~~RPl~sG~ls~~~a~~~~~~~~~-------l~l~l~~~~-~~~~~~~~~~~~~~~~~~Ys~ 112 (262)
.+||+.|.|.|+++. +.-|+.=| ++.+..+...+.+ ++....+.. .+...+.+++.++...+.|+.
T Consensus 197 iindirDiEGDr~~G~kTLPV~lG---~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~ 271 (307)
T PRK13591 197 CVYDFKDVKGDTLAGIKTLPVSLG---EQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS 271 (307)
T ss_pred HHHHhhhhHhHHHcCCeeEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence 579999999999865 44465434 4444332222211 122222221 122344456778888999995
No 55
>PRK12872 ubiA prenyltransferase; Reviewed
Probab=93.88 E-value=0.26 Score=43.74 Aligned_cols=32 Identities=25% Similarity=0.338 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhhhhchhhhhcCC-CCCcccCCc
Q 044153 36 LLVNIYEVGVNQLYDVEIDKINK-PDLPLASGD 67 (262)
Q Consensus 36 ~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~ 67 (262)
++....-+.+||.-|+|.|++++ +.=|..-|+
T Consensus 171 fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~ 203 (285)
T PRK12872 171 FLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK 203 (285)
T ss_pred HHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence 34455566889999999999854 555655453
No 56
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=93.72 E-value=0.28 Score=44.14 Aligned_cols=46 Identities=20% Similarity=0.060 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHH
Q 044153 28 LLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGIT 75 (262)
Q Consensus 28 ~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~ 75 (262)
.++.-++..+..+..+..|+..|.|+|++|+++.+.. ++..+.++.
T Consensus 178 ~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~ 223 (303)
T COG1575 178 ILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARK 223 (303)
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHH
Confidence 3455566667778888999999999999988765432 344444443
No 57
>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=91.35 E-value=1.6 Score=39.73 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhchhhhhcCCCCC-cccCCccCHHHHHHHHHHHH
Q 044153 30 KAIVPGLLVNIYEVGVNQLYDVEIDKINKPDL-PLASGDLSIGAGITITCTCL 81 (262)
Q Consensus 30 l~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~R-Pl~sG~ls~~~a~~~~~~~~ 81 (262)
+..+...+..+.....||+.|+|.|+++.++. |. ++.++.+..+...+.
T Consensus 193 l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~ 242 (317)
T PRK13387 193 VISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILF 242 (317)
T ss_pred HHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHH
Confidence 34555566677778899999999999876443 33 345666555443333
No 58
>PLN00012 chlorophyll synthetase; Provisional
Probab=89.95 E-value=2.6 Score=39.30 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhhhchhhhhcC-CCCCcccCCc
Q 044153 37 LVNIYEVGVNQLYDVEIDKIN-KPDLPLASGD 67 (262)
Q Consensus 37 l~~~a~~~iNd~~D~~~D~~n-~~~RPl~sG~ 67 (262)
+...+....||+-|+|.|++. ++.-|+.-|+
T Consensus 263 l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~ 294 (375)
T PLN00012 263 IAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV 294 (375)
T ss_pred HHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence 456667789999999999884 4666765554
No 59
>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=89.78 E-value=1.3 Score=39.55 Aligned_cols=36 Identities=11% Similarity=-0.024 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhhhhchhhhhcCC-CCCcccCCc
Q 044153 32 IVPGLLVNIYEVGVNQLYDVEIDKINK-PDLPLASGD 67 (262)
Q Consensus 32 ~l~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~ 67 (262)
.+..++.+..-...|++.|+|.|+++. |.-|..-|+
T Consensus 171 ~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~ 207 (285)
T PRK12847 171 YIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN 207 (285)
T ss_pred HHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence 344455666677789999999999854 666665553
No 60
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=89.72 E-value=2.7 Score=37.98 Aligned_cols=37 Identities=16% Similarity=0.090 Sum_probs=25.4
Q ss_pred HHHHHHHHhhhhhchhhhhcCCCCC-cccCCccCHHHHHHH
Q 044153 37 LVNIYEVGVNQLYDVEIDKINKPDL-PLASGDLSIGAGITI 76 (262)
Q Consensus 37 l~~~a~~~iNd~~D~~~D~~n~~~R-Pl~sG~ls~~~a~~~ 76 (262)
+..+.....||+.|+|+|+++.++. |. ++.++.+..+
T Consensus 185 ll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l 222 (304)
T PRK07419 185 LATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQL 222 (304)
T ss_pred HHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHH
Confidence 5566777899999999999976543 32 3445555543
No 61
>PRK12875 ubiA prenyltransferase; Reviewed
Probab=89.66 E-value=2.6 Score=37.71 Aligned_cols=56 Identities=16% Similarity=0.123 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhhhhchhhhhcCC-CCCcccCCccCHHHHHHHHHHHHHHHHHHHHHh
Q 044153 33 VPGLLVNIYEVGVNQLYDVEIDKINK-PDLPLASGDLSIGAGITITCTCLLMSLAIGIML 91 (262)
Q Consensus 33 l~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~ 91 (262)
++..+...+...+|++-|+|.|++.+ +.-|. ++.++.++.+...+.+++..+....
T Consensus 172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~~~~ 228 (282)
T PRK12875 172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAFAAV 228 (282)
T ss_pred HHHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHHHHH
Confidence 33456667778999999999999854 44443 3456666655555555554443333
No 62
>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.
Probab=89.46 E-value=1.5 Score=39.08 Aligned_cols=36 Identities=19% Similarity=0.102 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhhhhhchhhhhcC-CCCCcccCCc
Q 044153 32 IVPGLLVNIYEVGVNQLYDVEIDKIN-KPDLPLASGD 67 (262)
Q Consensus 32 ~l~~~l~~~a~~~iNd~~D~~~D~~n-~~~RPl~sG~ 67 (262)
.++.++-+.+-..+|++.|+|.|++. .|.-|..-|+
T Consensus 166 ~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 202 (281)
T TIGR01474 166 YLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD 202 (281)
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence 44555667778889999999999984 4666776664
No 63
>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed
Probab=89.37 E-value=2.7 Score=38.10 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=21.6
Q ss_pred HHHHHHHhhhhhchhhhhcC-CCCCcccCC
Q 044153 38 VNIYEVGVNQLYDVEIDKIN-KPDLPLASG 66 (262)
Q Consensus 38 ~~~a~~~iNd~~D~~~D~~n-~~~RPl~sG 66 (262)
...+....||+.|+|.|+++ ++.-|+.-|
T Consensus 201 ~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G 230 (314)
T PRK07566 201 GAHGIMTLNDFKSVEGDRQLGLRSLPVVFG 230 (314)
T ss_pred HHHHHHHHHHHHHhHhHHHcCCcccceeEc
Confidence 45556789999999999985 455666545
No 64
>PRK13105 ubiA prenyltransferase; Reviewed
Probab=89.06 E-value=3.4 Score=36.92 Aligned_cols=58 Identities=10% Similarity=0.082 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHhhhhhchhhhhcCCC-CCcccCCccCHHHHHHHHHHHHHHHHHHHHHhh
Q 044153 32 IVPGLLVNIYEVGVNQLYDVEIDKINKP-DLPLASGDLSIGAGITITCTCLLMSLAIGIMLR 92 (262)
Q Consensus 32 ~l~~~l~~~a~~~iNd~~D~~~D~~n~~-~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~~~~ 92 (262)
..+..+...+...+||+-|.|.||++.+ .=|. ++.++.+..+...+..++.+.....+
T Consensus 166 ~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~ 224 (282)
T PRK13105 166 LAAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP 224 (282)
T ss_pred HHHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455778889999999999998553 3342 45677777766666666554443333
No 65
>PRK12392 bacteriochlorophyll c synthase; Provisional
Probab=88.89 E-value=2.3 Score=38.92 Aligned_cols=32 Identities=25% Similarity=0.282 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhhhhchhhhhcCC-CCCcccCC
Q 044153 35 GLLVNIYEVGVNQLYDVEIDKINK-PDLPLASG 66 (262)
Q Consensus 35 ~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG 66 (262)
.++...+...+||+.|+|.|++.. +.-|+.=|
T Consensus 189 ~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G 221 (331)
T PRK12392 189 NFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIG 221 (331)
T ss_pred HHHHHHHHHHHHcccchhhHHHcCCeeeEeEEc
Confidence 345566777789999999999854 44455433
No 66
>PLN02922 prenyltransferase
Probab=88.18 E-value=3.3 Score=37.64 Aligned_cols=46 Identities=20% Similarity=0.117 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHH
Q 044153 29 LKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITI 76 (262)
Q Consensus 29 ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~ 76 (262)
++..+...+..+.....||+.|+|.|+++.++... =++.++.+..+
T Consensus 191 ~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~--v~lG~~~a~~l 236 (315)
T PLN02922 191 LSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPL--VRLGTEKGSRV 236 (315)
T ss_pred HHHHHHHHHHHHHHHHHccCcchhhHHHcCcccee--eEEChHHHHHH
Confidence 34445555677778889999999999997655422 23455555543
No 67
>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase. A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.
Probab=87.72 E-value=1.6 Score=38.79 Aligned_cols=33 Identities=18% Similarity=0.012 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhhhhchhhhhcC-CCCCcccCC
Q 044153 34 PGLLVNIYEVGVNQLYDVEIDKIN-KPDLPLASG 66 (262)
Q Consensus 34 ~~~l~~~a~~~iNd~~D~~~D~~n-~~~RPl~sG 66 (262)
..++-+..-..+||..|+|.|++. .|.-|+.-|
T Consensus 166 ~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G 199 (282)
T TIGR01475 166 GVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFG 199 (282)
T ss_pred HHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhc
Confidence 344455566779999999999874 466677666
No 68
>TIGR02056 ChlG chlorophyll synthase, ChlG. This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).
Probab=87.47 E-value=4.6 Score=36.43 Aligned_cols=36 Identities=31% Similarity=0.276 Sum_probs=23.8
Q ss_pred HHHHHHHhhhhhchhhhhcCC-CCCcccCCccCHHHHHHH
Q 044153 38 VNIYEVGVNQLYDVEIDKINK-PDLPLASGDLSIGAGITI 76 (262)
Q Consensus 38 ~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~ls~~~a~~~ 76 (262)
...+....||+.|+|.|+++. +.-|..-| ++.+...
T Consensus 195 ~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG---~~~a~~~ 231 (306)
T TIGR02056 195 AGLGIAIVNDFKSVEGDRALGLQSLPVAFG---IETAAWI 231 (306)
T ss_pred HHHHHHHHHHccChHHHHHcCCcCcchhcC---hHHHHHH
Confidence 455666899999999999854 44455444 4444433
No 69
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=87.21 E-value=2.2 Score=38.19 Aligned_cols=40 Identities=15% Similarity=0.050 Sum_probs=25.9
Q ss_pred HHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHH
Q 044153 37 LVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITC 78 (262)
Q Consensus 37 l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~ 78 (262)
+........||..|+|.|+++.++... -++.++.++.+..
T Consensus 175 ~l~~~il~~Nn~~D~~~D~~~Gk~Tl~--v~lG~~~a~~l~~ 214 (284)
T TIGR00751 175 LLACAVLNINNLRDIPTDARAGKNTLA--VRLGDARTRMYHQ 214 (284)
T ss_pred HHHHHHHHHcCcccchhHHHcCCEeeh--hhcchHhHHHHHH
Confidence 344667779999999999986544321 2455666654433
No 70
>PRK12884 ubiA prenyltransferase; Reviewed
Probab=86.61 E-value=5 Score=35.46 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhhhhhchhhhhcCC-CCCcccCCc
Q 044153 34 PGLLVNIYEVGVNQLYDVEIDKINK-PDLPLASGD 67 (262)
Q Consensus 34 ~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~ 67 (262)
..++....-...||+.|+|.|+++. +.-|..-|+
T Consensus 163 ~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~ 197 (279)
T PRK12884 163 MAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGE 197 (279)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcH
Confidence 3345555678899999999998854 555654443
No 71
>PRK12886 ubiA prenyltransferase; Reviewed
Probab=85.94 E-value=3.3 Score=37.15 Aligned_cols=32 Identities=22% Similarity=0.133 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhhhchhhhhcC-CCCCcccCCc
Q 044153 36 LLVNIYEVGVNQLYDVEIDKIN-KPDLPLASGD 67 (262)
Q Consensus 36 ~l~~~a~~~iNd~~D~~~D~~n-~~~RPl~sG~ 67 (262)
++-+.+-..+|++.|+|.|++. .|.-|+.-|+
T Consensus 172 ~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 204 (291)
T PRK12886 172 LFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV 204 (291)
T ss_pred HHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence 3334445567888999999874 4777776665
No 72
>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase. This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.
Probab=85.90 E-value=5.5 Score=35.33 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=23.9
Q ss_pred HHHHHHHhhhhhchhhhhcCC-CCCcccCCccCHHHHHHH
Q 044153 38 VNIYEVGVNQLYDVEIDKINK-PDLPLASGDLSIGAGITI 76 (262)
Q Consensus 38 ~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~ls~~~a~~~ 76 (262)
...+....||+.|.|.|+++. +.-|..=| ++.+..+
T Consensus 173 ~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG---~~~a~~l 209 (283)
T TIGR01476 173 GAHGIMTLNDFKSVEGDRQLGLRSLPVMIG---VKRAAIV 209 (283)
T ss_pred HHHHHHHHHhccchhhHHHcCCcCcceEEc---HHHHHHH
Confidence 355567899999999999854 44555444 4444443
No 73
>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase. This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.
Probab=85.77 E-value=5.4 Score=35.69 Aligned_cols=55 Identities=11% Similarity=-0.054 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCCCCC-cccCCccCHHHHHHHHHH
Q 044153 18 ADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINKPDL-PLASGDLSIGAGITITCT 79 (262)
Q Consensus 18 ~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~~~R-Pl~sG~ls~~~a~~~~~~ 79 (262)
..+++..+. . .+...+...+....||+.|+|+|+++.++. |. ++.++.+..+...
T Consensus 157 ~~~~~~~~l---~-sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~ 212 (285)
T TIGR02235 157 QSFSLIPWK---A-SILVGLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPW 212 (285)
T ss_pred CcCcHHHHH---H-HHHHHHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHH
Confidence 456665553 1 222235566777899999999999865443 32 4556665544333
No 74
>PRK12888 ubiA prenyltransferase; Reviewed
Probab=85.65 E-value=3.6 Score=36.78 Aligned_cols=34 Identities=18% Similarity=-0.090 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhhhhchhhhhcCC-CCCcccCCc
Q 044153 34 PGLLVNIYEVGVNQLYDVEIDKINK-PDLPLASGD 67 (262)
Q Consensus 34 ~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~ 67 (262)
...+-+.+-..+|++.|+|.|++.. |.-|..-|+
T Consensus 167 ~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~ 201 (284)
T PRK12888 167 AVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV 201 (284)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence 3444566678999999999999854 666665453
No 75
>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed
Probab=85.43 E-value=4 Score=36.34 Aligned_cols=46 Identities=9% Similarity=0.015 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC-CCCcccCCc
Q 044153 18 ADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK-PDLPLASGD 67 (262)
Q Consensus 18 ~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~ 67 (262)
.+++...+ +..+..++-+..-...|++.|+|.|++++ |.-|+.-|+
T Consensus 158 ~~~~~~~~----~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~ 204 (282)
T PRK12848 158 GSVPLEAW----LLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGR 204 (282)
T ss_pred CCCcHHHH----HHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhcc
Confidence 34554443 23344455566667789999999999854 666776554
No 76
>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated
Probab=85.37 E-value=5.6 Score=35.41 Aligned_cols=45 Identities=20% Similarity=0.175 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhhhhchhhhhcCC-CCCcccCCccCHHHHHHHHHH
Q 044153 32 IVPGLLVNIYEVGVNQLYDVEIDKINK-PDLPLASGDLSIGAGITITCT 79 (262)
Q Consensus 32 ~l~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~ls~~~a~~~~~~ 79 (262)
.+...+........||+.|+|.|+++. +.-|. ++.++.+..+...
T Consensus 174 ~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v---~lG~~~a~~~~~~ 219 (293)
T PRK06080 174 ALPCGLLIGAVLLANNIRDIETDRENGKNTLAV---RLGDKNARRLHAA 219 (293)
T ss_pred HHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEe---eECcHhHHHHHHH
Confidence 333445566677899999999999865 33343 3445555444333
No 77
>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=83.93 E-value=4.4 Score=36.27 Aligned_cols=46 Identities=13% Similarity=-0.048 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC-CCCcccCCc
Q 044153 18 ADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK-PDLPLASGD 67 (262)
Q Consensus 18 ~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~ 67 (262)
+++++..+ +..+..++-+.+-..+|++.|+|.|++.. |.-|+.-|+
T Consensus 162 g~~~~~~~----~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~ 208 (290)
T PRK12870 162 GHLDLGTW----LLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGR 208 (290)
T ss_pred CCCCHHHH----HHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhcc
Confidence 34555443 22345566777788899999999999854 655654443
No 78
>PRK13106 ubiA prenyltransferase; Reviewed
Probab=83.55 E-value=5.8 Score=35.78 Aligned_cols=35 Identities=17% Similarity=0.134 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhhhhhchhhhhcCC-CCCcccCC
Q 044153 32 IVPGLLVNIYEVGVNQLYDVEIDKINK-PDLPLASG 66 (262)
Q Consensus 32 ~l~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG 66 (262)
.++.++-..+-..+|++-|+|.|++.. +.-|+.=|
T Consensus 183 ~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G 218 (300)
T PRK13106 183 VIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG 218 (300)
T ss_pred HHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh
Confidence 445566667778899999999998754 66666444
No 79
>PRK12882 ubiA prenyltransferase; Reviewed
Probab=83.46 E-value=8.4 Score=34.03 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhhchhhhhcCC-CCCcccCC
Q 044153 36 LLVNIYEVGVNQLYDVEIDKINK-PDLPLASG 66 (262)
Q Consensus 36 ~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG 66 (262)
++...+-..+||+-|.|.|++++ |.-|..-|
T Consensus 167 fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G 198 (276)
T PRK12882 167 ALATLAREIIKDVEDIEGDRAEGARTLPILIG 198 (276)
T ss_pred HHHHHHHHHHhhhhhhhhHHHcCCccccHHhh
Confidence 34556678899999999999854 66666545
No 80
>PRK12874 ubiA prenyltransferase; Reviewed
Probab=83.22 E-value=4.4 Score=36.32 Aligned_cols=35 Identities=20% Similarity=0.121 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHhhhhhchhhhhcC-CCCCcccCCc
Q 044153 33 VPGLLVNIYEVGVNQLYDVEIDKIN-KPDLPLASGD 67 (262)
Q Consensus 33 l~~~l~~~a~~~iNd~~D~~~D~~n-~~~RPl~sG~ 67 (262)
+..++-+.+-..+|++.|+|.|++. .|.-|..-|+
T Consensus 174 ~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~ 209 (291)
T PRK12874 174 LGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE 209 (291)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence 3445666677789999999999874 4766766554
No 81
>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed
Probab=82.60 E-value=7.9 Score=34.28 Aligned_cols=31 Identities=23% Similarity=0.262 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhhhhchhhhhcCC-CCCcccCC
Q 044153 36 LLVNIYEVGVNQLYDVEIDKINK-PDLPLASG 66 (262)
Q Consensus 36 ~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG 66 (262)
++.+.+-..+||+-|+|.|+++. |.-|..-|
T Consensus 164 f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G 195 (279)
T PRK09573 164 FFSTWSREIVKDIEDIEGDLKENVITLPIKYG 195 (279)
T ss_pred HHHHHHHHHHhhhhhhhhHHHCCCccccHHhh
Confidence 34445566779999999999744 66676555
No 82
>PRK12871 ubiA prenyltransferase; Reviewed
Probab=82.38 E-value=12 Score=33.69 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhhhhhchhhhhcC-CCCCcccCCc
Q 044153 33 VPGLLVNIYEVGVNQLYDVEIDKIN-KPDLPLASGD 67 (262)
Q Consensus 33 l~~~l~~~a~~~iNd~~D~~~D~~n-~~~RPl~sG~ 67 (262)
+..++-+..-...||+.|+|.|+++ .|.-|+.-|+
T Consensus 182 ~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~ 217 (297)
T PRK12871 182 VFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGM 217 (297)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeech
Confidence 3445556667889999999999985 4666776664
No 83
>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]
Probab=82.26 E-value=5.1 Score=35.68 Aligned_cols=24 Identities=17% Similarity=0.296 Sum_probs=19.0
Q ss_pred hhcCCChhhhHHcCC-cccceeech
Q 044153 170 VLDMPDVDGDKEHGI-QTLSIALGK 193 (262)
Q Consensus 170 ~~~~~D~e~D~~~G~-~Tlpv~~G~ 193 (262)
+||+.|+|-|+++-. |.-|..=|+
T Consensus 66 iND~~D~eiD~~n~rt~~RPl~sG~ 90 (289)
T COG0382 66 INDLADREIDRINPRTKNRPLPSGR 90 (289)
T ss_pred HHHHhhhhccCCCCCccCCCCCCCC
Confidence 999999999999865 455666563
No 84
>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed
Probab=81.53 E-value=8.1 Score=34.15 Aligned_cols=31 Identities=32% Similarity=0.455 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhhhchhhhhcC-CCCCcccCCc
Q 044153 37 LVNIYEVGVNQLYDVEIDKIN-KPDLPLASGD 67 (262)
Q Consensus 37 l~~~a~~~iNd~~D~~~D~~n-~~~RPl~sG~ 67 (262)
+...+-...||+.|+|.|++. .|.-|+.-|+
T Consensus 165 l~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~ 196 (277)
T PRK12883 165 LVNVAREIMKDIEDIEGDKAKGAKTLPIIIGK 196 (277)
T ss_pred HHHHHHHHHhhhhhhccHHHcCCcCcChHhcH
Confidence 344456678999999999984 4666765553
No 85
>PRK12887 ubiA tocopherol phytyltransferase; Reviewed
Probab=79.29 E-value=13 Score=33.52 Aligned_cols=32 Identities=16% Similarity=0.116 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhhhhchhhhhcCC-CCCcc
Q 044153 32 IVPGLLVNIYEVGVNQLYDVEIDKINK-PDLPL 63 (262)
Q Consensus 32 ~l~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl 63 (262)
.+..++...+-..+||+-|+|.|+++. +.-|+
T Consensus 188 ~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav 220 (308)
T PRK12887 188 TLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTL 220 (308)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHcCCcchhH
Confidence 334455666778899999999999865 33343
No 86
>PRK13595 ubiA prenyltransferase; Provisional
Probab=77.08 E-value=21 Score=32.11 Aligned_cols=29 Identities=21% Similarity=0.123 Sum_probs=18.6
Q ss_pred hhcCCChhhhHHcCCcccce---eechHHHHHH
Q 044153 170 VLDMPDVDGDKEHGIQTLSI---ALGKEKVLWL 199 (262)
Q Consensus 170 ~~~~~D~e~D~~~G~~Tlpv---~~G~~~~~~~ 199 (262)
+||.-|+|.|+++-.+ -+. ++.++.++.+
T Consensus 66 iND~fD~eiDa~Npr~-~~i~~G~is~~~~~~~ 97 (292)
T PRK13595 66 LNDLADRETDAASPRK-GGWQGARLSPGEVRPL 97 (292)
T ss_pred HHhhhhhhhhccCCCC-CCCCcCccCHHHHHHH
Confidence 9999999999876433 343 3444444443
No 87
>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]. These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane
Probab=75.51 E-value=15 Score=31.35 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=19.3
Q ss_pred hhcCCChhhhHHc-CCcccceeechHH
Q 044153 170 VLDMPDVDGDKEH-GIQTLSIALGKEK 195 (262)
Q Consensus 170 ~~~~~D~e~D~~~-G~~Tlpv~~G~~~ 195 (262)
.||..|+|.|+.+ +.+.-|..-|+-+
T Consensus 42 ~Nd~~D~~~D~~~~~~~~rPl~~g~i~ 68 (257)
T PF01040_consen 42 LNDYFDYEEDRIHPNKPNRPLPSGRIS 68 (257)
T ss_pred hhChhhhhcCcccccccCcchhHHHHh
Confidence 9999999999996 4556566555443
No 88
>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed
Probab=73.75 E-value=29 Score=31.45 Aligned_cols=34 Identities=18% Similarity=0.023 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhhhhhchhhhhc-CCCCCcccCCc
Q 044153 34 PGLLVNIYEVGVNQLYDVEIDKI-NKPDLPLASGD 67 (262)
Q Consensus 34 ~~~l~~~a~~~iNd~~D~~~D~~-n~~~RPl~sG~ 67 (262)
..++-+..-..++++.|+|.|++ +.|.-|..-|+
T Consensus 200 ~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~ 234 (314)
T PRK12878 200 GSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGD 234 (314)
T ss_pred HHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhch
Confidence 33444555566789999999988 44666766564
No 89
>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional
Probab=73.37 E-value=15 Score=33.14 Aligned_cols=36 Identities=33% Similarity=0.433 Sum_probs=22.1
Q ss_pred hhcCCChhhhHHc-CCcccceeec---hHHHHHHHHHHHH
Q 044153 170 VLDMPDVDGDKEH-GIQTLSIALG---KEKVLWLGVYMLL 205 (262)
Q Consensus 170 ~~~~~D~e~D~~~-G~~Tlpv~~G---~~~~~~~~~~l~~ 205 (262)
+||+.|+|.|+++ .+|.=|..=| .+.+..+..++..
T Consensus 65 iND~~D~e~Dr~~prk~~RPlasG~is~~~A~~~~~~l~~ 104 (295)
T PRK12324 65 VNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLV 104 (295)
T ss_pred HHhHHHHHhhccCCCCCCCCCCCCccCHHHHHHHHHHHHH
Confidence 9999999999996 3344444444 4444444443333
No 90
>PRK13592 ubiA prenyltransferase; Provisional
Probab=73.08 E-value=24 Score=31.86 Aligned_cols=36 Identities=17% Similarity=0.266 Sum_probs=23.4
Q ss_pred hhcCCChhhhHHcCCcccceeec---hHHHHHHHHHHHHH
Q 044153 170 VLDMPDVDGDKEHGIQTLSIALG---KEKVLWLGVYMLLV 206 (262)
Q Consensus 170 ~~~~~D~e~D~~~G~~Tlpv~~G---~~~~~~~~~~l~~~ 206 (262)
.||+.|+|-|+.+ ++.-|.-=| ++.++..+..+..+
T Consensus 65 iNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L~~~ 103 (299)
T PRK13592 65 ADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFIVAV 103 (299)
T ss_pred HHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHHHHH
Confidence 9999999999665 555565444 45555554444333
No 91
>PRK05951 ubiA prenyltransferase; Reviewed
Probab=73.00 E-value=26 Score=31.43 Aligned_cols=37 Identities=16% Similarity=-0.007 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhhhhhchhhhhcCCCCC-cccCCccCHHHHH
Q 044153 35 GLLVNIYEVGVNQLYDVEIDKINKPDL-PLASGDLSIGAGI 74 (262)
Q Consensus 35 ~~l~~~a~~~iNd~~D~~~D~~n~~~R-Pl~sG~ls~~~a~ 74 (262)
..+........|++-|+|.|+++.++. |. ++.++.+.
T Consensus 180 ~~l~~~~il~~n~~~D~e~D~~~G~~Tlav---~lG~~~a~ 217 (296)
T PRK05951 180 LGLLMALVLLSNNLRDIEDDERKGIPTLAV---IFGRRGAA 217 (296)
T ss_pred HHHHHHHHHHHCCCccchhHHHCCCeeeee---eEcHhhHH
Confidence 334456677899999999999865432 32 45566553
No 92
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=72.83 E-value=4.2 Score=28.23 Aligned_cols=39 Identities=10% Similarity=0.336 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcCC
Q 044153 18 ADLTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKINK 58 (262)
Q Consensus 18 ~~~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n~ 58 (262)
..++|..|- .+.+++++++...++..|=||-.++||++.
T Consensus 26 d~~sp~qW~--aIGvi~gi~~~~lt~ltN~YFK~k~drr~~ 64 (68)
T PF04971_consen 26 DQFSPSQWA--AIGVIGGIFFGLLTYLTNLYFKIKEDRRKA 64 (68)
T ss_pred hccCcccch--hHHHHHHHHHHHHHHHhHhhhhhhHhhhHh
Confidence 347777774 556788888888999999999999998643
No 93
>PLN02878 homogentisate phytyltransferase
Probab=69.47 E-value=17 Score=32.56 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=21.7
Q ss_pred HHh-hhcCCChhhhHHcCCcccceeech
Q 044153 167 GCQ-VLDMPDVDGDKEHGIQTLSIALGK 193 (262)
Q Consensus 167 ~~~-~~~~~D~e~D~~~G~~Tlpv~~G~ 193 (262)
+.. +||..|+|=| |.|++..|.-=|+
T Consensus 38 yivglNd~~D~EID-kINkP~rPIpSG~ 64 (280)
T PLN02878 38 YIVGLNQLYDIEID-KVNKPYLPLASGE 64 (280)
T ss_pred heechhhhhhhccc-ccCCCCCCCCCCC
Confidence 444 9999999999 5779999998774
No 94
>PLN02809 4-hydroxybenzoate nonaprenyltransferase
Probab=65.60 E-value=24 Score=31.65 Aligned_cols=24 Identities=33% Similarity=0.293 Sum_probs=19.6
Q ss_pred hhcCCChhhhHHcCC-cccceeech
Q 044153 170 VLDMPDVDGDKEHGI-QTLSIALGK 193 (262)
Q Consensus 170 ~~~~~D~e~D~~~G~-~Tlpv~~G~ 193 (262)
+||+.|+|-|++..+ |+-|..=|+
T Consensus 64 ~Nd~~Dr~iD~~~~RT~~RPL~sG~ 88 (289)
T PLN02809 64 INDLLDRDIDKKVERTKLRPIASGA 88 (289)
T ss_pred HHhhHHhccccCCCCCCCCCCCCCC
Confidence 999999999998755 567777774
No 95
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=62.21 E-value=34 Score=32.98 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhhc-CCCCCcccCCccCHHHHHHHHHHHHHHHHHHHH
Q 044153 27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKI-NKPDLPLASGDLSIGAGITITCTCLLMSLAIGI 89 (262)
Q Consensus 27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~-n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~~ 89 (262)
...+...+++++..++-.-+|+++.-+|+. ++++| .+.+++..++..+++..++.
T Consensus 354 AtaLstaaGL~l~iasavsHDiY~~vik~~ase~~~--------v~vaRi~~v~~~vva~~lgi 409 (529)
T COG4147 354 ATALSTAAGLLLVIASAVSHDLYAMVIKKGATEKKE--------VRVARIAVVILGVVAILLGI 409 (529)
T ss_pred HHHHHHHhhHHHHHHHHHHhHHHHHHhCCCCCccce--------ehhHHHHHHHHHHHHHHhee
Confidence 455778889999999999999999988766 33443 34455666666666666554
No 96
>COG1295 Rbn Ribonuclease BN family enzyme [Replication, recombination, and repair]
Probab=60.56 E-value=1.3e+02 Score=27.05 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=19.2
Q ss_pred HHHHHhhccCCCCcc-ccccc-chhhhHHHHHHhh
Q 044153 103 WFVLSSAYSVDLPFL-RWKRN-PFLATMYGVLERG 135 (262)
Q Consensus 103 ~~~~~~~Ys~~~pp~-rlKr~-~~~~~l~~~~~~~ 135 (262)
.+.+..+|.. +|+- +.|++ -..|.+..+..|-
T Consensus 201 ~~~f~~ly~~-lP~~~~~~~~~~~~Ga~~aai~~~ 234 (303)
T COG1295 201 TLGFFLLYRF-LPNVRVLKWRDVLPGALLAAILFE 234 (303)
T ss_pred HHHHHHHHHH-cCCccccchHHhhhhHHHHHHHHH
Confidence 3567788988 7886 34444 3445655555553
No 97
>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase. This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.
Probab=59.05 E-value=46 Score=29.38 Aligned_cols=21 Identities=24% Similarity=0.340 Sum_probs=13.2
Q ss_pred hhhchhhhhcCC-CCCcccCCc
Q 044153 47 QLYDVEIDKINK-PDLPLASGD 67 (262)
Q Consensus 47 d~~D~~~D~~n~-~~RPl~sG~ 67 (262)
.+.|+|.|+++. |.-|..-|+
T Consensus 179 a~~~~~dd~~~G~~tl~v~~G~ 200 (280)
T TIGR01473 179 ALKYKDDYRAAGIPMLPVVKGE 200 (280)
T ss_pred HHHhhhhHHHCCCccCCcccCH
Confidence 467888887643 555655453
No 98
>PRK12895 ubiA prenyltransferase; Reviewed
Probab=58.87 E-value=73 Score=28.50 Aligned_cols=32 Identities=22% Similarity=0.078 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhhhhchhhhhcCC-CCCcc
Q 044153 32 IVPGLLVNIYEVGVNQLYDVEIDKINK-PDLPL 63 (262)
Q Consensus 32 ~l~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl 63 (262)
.++.++-..+-.++.++-|+|.|++.. +.-|.
T Consensus 165 ~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~ 197 (286)
T PRK12895 165 FISSSLWIAGFDIIYVIPDIEYDKINGLKTIMN 197 (286)
T ss_pred HHHHHHHHHHHHHHHHhcchhhHHHcCCCchHH
Confidence 334455556667899999999999855 44454
No 99
>PRK04375 protoheme IX farnesyltransferase; Provisional
Probab=56.30 E-value=57 Score=29.17 Aligned_cols=30 Identities=17% Similarity=0.155 Sum_probs=18.1
Q ss_pred HHHHHHHHhhhhhchhhhhcCC-CCCcccCC
Q 044153 37 LVNIYEVGVNQLYDVEIDKINK-PDLPLASG 66 (262)
Q Consensus 37 l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG 66 (262)
+-+..-...|.+.|+|.|++.. |.-|+.-|
T Consensus 178 lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G 208 (296)
T PRK04375 178 LWTPPHFWALAIFRKDDYAAAGIPMLPVVKG 208 (296)
T ss_pred HHHHHHHHHHHHHHHhhHHHcCCCccceeeC
Confidence 3344444556688888886543 55566545
No 100
>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed
Probab=54.69 E-value=44 Score=29.60 Aligned_cols=22 Identities=27% Similarity=0.137 Sum_probs=14.2
Q ss_pred hhhhhchhhhhcC-CCCCcccCC
Q 044153 45 VNQLYDVEIDKIN-KPDLPLASG 66 (262)
Q Consensus 45 iNd~~D~~~D~~n-~~~RPl~sG 66 (262)
.|++.|+|-|++. .|.-|..-|
T Consensus 178 ~l~~~d~edd~~~G~~tlpv~~G 200 (279)
T PRK12869 178 SLALKYREDYRRAGVPMLPAVVG 200 (279)
T ss_pred HHHHHhHHhHHHcCCeecceeec
Confidence 3677788888663 355566544
No 101
>PRK12873 ubiA prenyltransferase; Reviewed
Probab=54.09 E-value=62 Score=29.10 Aligned_cols=32 Identities=22% Similarity=0.033 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhhhhchhhhhcCC-CCCcccCCc
Q 044153 36 LLVNIYEVGVNQLYDVEIDKINK-PDLPLASGD 67 (262)
Q Consensus 36 ~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG~ 67 (262)
++-+..-..+-.+.|+|.|++.. |.-|..-|+
T Consensus 180 ~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~ 212 (294)
T PRK12873 180 LLWTFGFDTVYAMADRRDDAKIGLNSSALSLGS 212 (294)
T ss_pred HHHHHHHHHHHHHHhHhhHHHcCCcccchhcCh
Confidence 33444444555667999999855 667776675
No 102
>PRK08238 hypothetical protein; Validated
Probab=51.80 E-value=61 Score=31.27 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=24.0
Q ss_pred hhcCCChhhhHHcC-Ccccceeec---hHHHHHHHHHHHHHH
Q 044153 170 VLDMPDVDGDKEHG-IQTLSIALG---KEKVLWLGVYMLLVV 207 (262)
Q Consensus 170 ~~~~~D~e~D~~~G-~~Tlpv~~G---~~~~~~~~~~l~~~~ 207 (262)
+||+-|+|.|+++- .|.=|..=| .+.+..+..++..++
T Consensus 245 ~ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~ 286 (479)
T PRK08238 245 LNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAG 286 (479)
T ss_pred HHhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999973 355565555 444444444443333
No 103
>PRK12876 ubiA prenyltransferase; Reviewed
Probab=51.38 E-value=1.9e+02 Score=26.17 Aligned_cols=35 Identities=14% Similarity=0.106 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHhhhhhchhhhhcCC-CCCcccCC
Q 044153 32 IVPGLLVNIYEVGVNQLYDVEIDKINK-PDLPLASG 66 (262)
Q Consensus 32 ~l~~~l~~~a~~~iNd~~D~~~D~~n~-~~RPl~sG 66 (262)
.++.++...+-.++.+.-|+|.|+++. +.-|..-|
T Consensus 178 ~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG 213 (300)
T PRK12876 178 GISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFG 213 (300)
T ss_pred HHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHC
Confidence 444455555566677899999999855 55565444
No 104
>PRK13362 protoheme IX farnesyltransferase; Provisional
Probab=40.08 E-value=1.6e+02 Score=26.62 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=21.5
Q ss_pred hhcCCChhhhHHcCC-cccceeec---hHHHHHHHHHH
Q 044153 170 VLDMPDVDGDKEHGI-QTLSIALG---KEKVLWLGVYM 203 (262)
Q Consensus 170 ~~~~~D~e~D~~~G~-~Tlpv~~G---~~~~~~~~~~l 203 (262)
+||..|+|-|++..+ |.=|..=| ++.+..+...+
T Consensus 66 ~Nd~~D~~iD~~~~Rt~~RPlpsG~is~~~A~~~~~~l 103 (306)
T PRK13362 66 LNNCIDRDIDAKMQRTRNRVTVTGEISLGEALGFGLAL 103 (306)
T ss_pred HhChHHhCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Confidence 999999999987654 34455555 44444443333
No 105
>PRK10299 PhoPQ regulatory protein; Provisional
Probab=37.52 E-value=46 Score=21.26 Aligned_cols=16 Identities=13% Similarity=0.291 Sum_probs=13.3
Q ss_pred HHHHHhhhhhchhhhh
Q 044153 40 IYEVGVNQLYDVEIDK 55 (262)
Q Consensus 40 ~a~~~iNd~~D~~~D~ 55 (262)
-...++|.+.|.++|=
T Consensus 19 lyl~ald~~CDQg~~F 34 (47)
T PRK10299 19 LWAQVFNMMCDQDVQF 34 (47)
T ss_pred HHHHHHHHHhcCCccc
Confidence 5678899999999763
No 106
>PLN02776 prenyltransferase
Probab=35.69 E-value=3.2e+02 Score=25.14 Aligned_cols=32 Identities=13% Similarity=0.108 Sum_probs=20.7
Q ss_pred hhcCCChhhhHHcCC-cccceeec---hHHHHHHHH
Q 044153 170 VLDMPDVDGDKEHGI-QTLSIALG---KEKVLWLGV 201 (262)
Q Consensus 170 ~~~~~D~e~D~~~G~-~Tlpv~~G---~~~~~~~~~ 201 (262)
+||+-|+|-|++..+ |.=|..-| ++.+..+..
T Consensus 48 ~N~i~DrdiD~~m~RT~~RPLpsGris~~~A~~~~~ 83 (341)
T PLN02776 48 LNQVFEVKNDSKMKRTMRRPLPSGRISVPHAVAWAV 83 (341)
T ss_pred HHhHHhhhhcccCCCCCCCCCCCCCCCHHHHHHHHH
Confidence 999999999988554 44455545 444444333
No 107
>PRK01637 hypothetical protein; Reviewed
Probab=33.73 E-value=3.3e+02 Score=23.98 Aligned_cols=21 Identities=10% Similarity=0.259 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhhhhhchhhh
Q 044153 34 PGLLVNIYEVGVNQLYDVEID 54 (262)
Q Consensus 34 ~~~l~~~a~~~iNd~~D~~~D 54 (262)
+.-.+++-..++|+.++.+++
T Consensus 105 a~~~~~~l~~a~N~i~~~~~~ 125 (286)
T PRK01637 105 ALMLISSIDKALNTIWRSKRK 125 (286)
T ss_pred HHHHHHHHHHHHHHHhCCCCC
Confidence 334556667788888876543
No 108
>PF04284 DUF441: Protein of unknown function (DUF441); InterPro: IPR007382 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 4 TM domains.
Probab=33.23 E-value=1.9e+02 Score=23.15 Aligned_cols=30 Identities=13% Similarity=0.370 Sum_probs=19.0
Q ss_pred CcccCCccCHHHHHH-----HHHHHHHHHHHHHHH
Q 044153 61 LPLASGDLSIGAGIT-----ITCTCLLMSLAIGIM 90 (262)
Q Consensus 61 RPl~sG~ls~~~a~~-----~~~~~~~l~l~l~~~ 90 (262)
-|+++|+++.++... -+.+....|...++.
T Consensus 59 vPiAtGki~~~~l~~~f~s~~g~~Ai~~Gilva~l 93 (140)
T PF04284_consen 59 VPIATGKIGFKDLLNSFKSWKGIIAILAGILVAWL 93 (140)
T ss_pred ccccCCCcCHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence 499999999998753 233344445555443
No 109
>PLN02953 phosphatidate cytidylyltransferase
Probab=29.79 E-value=1.7e+02 Score=27.52 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=17.7
Q ss_pred hhcCCChhhhHHcCCcccceeechHHHH
Q 044153 170 VLDMPDVDGDKEHGIQTLSIALGKEKVL 197 (262)
Q Consensus 170 ~~~~~D~e~D~~~G~~Tlpv~~G~~~~~ 197 (262)
.+|.-.+-.-+..|++-++ .++++++.
T Consensus 280 ~~Di~AY~~G~~fGk~kl~-~ISPkKTw 306 (403)
T PLN02953 280 ATDTFAFLGGKAFGRTPLT-SISPKKTW 306 (403)
T ss_pred HHHHHHHHHHHHhCCCCCC-cCCCCCee
Confidence 3455555556777888777 77777653
No 110
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=28.63 E-value=5e+02 Score=24.43 Aligned_cols=129 Identities=20% Similarity=0.201 Sum_probs=60.3
Q ss_pred cCCccCHHHHHHHHHHHHHHHHHHHHHh-hhHHHHH-----HHHHHHHHHhhccC--C-CCcccccccchhhhHHHHHHh
Q 044153 64 ASGDLSIGAGITITCTCLLMSLAIGIML-RSPPLIS-----TIIMWFVLSSAYSV--D-LPFLRWKRNPFLATMYGVLER 134 (262)
Q Consensus 64 ~sG~ls~~~a~~~~~~~~~l~l~l~~~~-~~~~~~~-----~~~~~~~~~~~Ys~--~-~pp~rlKr~~~~~~l~~~~~~ 134 (262)
.++++++|..+.....+.+++=.++.+. |.+.+.. ++..+.+.+..++. + .|| =||-.-.+.+..+...
T Consensus 71 lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp--~~~~~Aiaiv~~G~tl 148 (394)
T COG2814 71 LTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAARLVPP--GKRGRALALVFTGLTL 148 (394)
T ss_pred HHcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--cchhhHHHHHHHHHHH
Confidence 4577888888877777777665554433 2222211 11222233333322 1 244 2332233444444333
Q ss_pred hh--hhhhHHHHHHHHHhhcc-hhHHHHH-HHHHHHHHhhhcCC--ChhhhHHcCCcccceeechHHHH
Q 044153 135 GL--AMPLGYFMHIQAQVRAW-KTYRVFK-NIDVCSGCQVLDMP--DVDGDKEHGIQTLSIALGKEKVL 197 (262)
Q Consensus 135 ~~--~~~~g~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~--D~e~D~~~G~~Tlpv~~G~~~~~ 197 (262)
+. .+|+|-+.. ..+|+ ....... ...+........+| |.+++++...++..-.+.+++-.
T Consensus 149 A~v~GvPLGt~ig---~~~GWR~~F~~ia~l~ll~~~~~~~~lP~~~~~~~~~~~~~~~~~~l~~p~v~ 214 (394)
T COG2814 149 ATVLGVPLGTFLG---QLFGWRATFLAIAVLALLALLLLWKLLPPSEISGSLPGPLRTLLRLLRRPGVL 214 (394)
T ss_pred HHHHhccHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHhCCCccCCCCCCcchhHHHHHhcCchHH
Confidence 32 246666552 24443 1111111 11212222255566 67767667777777777766543
No 111
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. Trans-Isoprenyl Diphosphate Synthases (Trans_IPPS) of class 1 isoprenoid biosynthesis enzymes which either synthesis geranyl/farnesyl diphosphates (GPP/FPP) or longer chained products from isoprene precursors, isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), or use geranyl (C10)-, farnesyl (C15)-, or geranylgeranyl (C20)-diphosphate as substrate. These enzymes produce a myriad of precursors for such end products as steroids, cholesterol, sesquiterpenes, heme, carotenoids, retinoids, diterpenes, ubiquinone, and archaeal ether linked lipids; and are widely distributed among archaea, bacteria, and eukareya. The enzymes in this family share the same 'isoprenoid synthase fold' and include the head-to-tail (HT) IPPS which catalyze the successive 1'-4 condensation of the 5-carbon IPP to the growing isoprene chain to form linear, all-trans, C10-, C15-, C20- C25-, C30-, C35-, C40-, C45-, or C50-isoprenoid diphosphates
Probab=26.66 E-value=35 Score=28.86 Aligned_cols=33 Identities=30% Similarity=0.313 Sum_probs=25.8
Q ss_pred HHHHhhhcCCChhhhH----------HcCCcccceeechHHHH
Q 044153 165 CSGCQVLDMPDVDGDK----------EHGIQTLSIALGKEKVL 197 (262)
Q Consensus 165 ~~~~~~~~~~D~e~D~----------~~G~~Tlpv~~G~~~~~ 197 (262)
..|.+.+|++|+.+|. +.|+.|+|.....+...
T Consensus 160 ~a~Qi~dd~~D~~~d~~~~gk~~~D~~~gr~tlp~~~~~~~~~ 202 (236)
T cd00867 160 LAFQLTDDLLDVFGDAEELGKVGSDLREGRITLPVILARERAA 202 (236)
T ss_pred HHHHHHHHhccccCChHHHCccHHHHHcCCchHHHHHHHHHHH
Confidence 3455689999998887 89999999998844433
No 112
>PF04547 Anoctamin: Calcium-activated chloride channel; InterPro: IPR007632 This family contains the anoctamin/TMEM16 proteins which are thought to be calcium-dependent chloride channel [].
Probab=25.71 E-value=2.1e+02 Score=27.06 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhhc---CCCCCcccCCccC
Q 044153 27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKI---NKPDLPLASGDLS 69 (262)
Q Consensus 27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~---n~~~RPl~sG~ls 69 (262)
|++....+.+-.......+|++.+...|+. +.-+||.|.+.=+
T Consensus 326 Gyv~lF~~afPlapl~allnN~~eir~D~~Kl~~~~rRP~p~~~~~ 371 (452)
T PF04547_consen 326 GYVTLFSAAFPLAPLFALLNNIVEIRLDAFKLLYLYRRPVPRRASS 371 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCCCcccccc
Confidence 556566666777778889999999999987 4478899876544
No 113
>PF04341 DUF485: Protein of unknown function, DUF485; InterPro: IPR007436 This family includes several putative integral membrane proteins.
Probab=24.60 E-value=1.4e+02 Score=21.67 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhhhhchhhhhcC
Q 044153 20 LTPTFFIGLLKAIVPGLLVNIYEVGVNQLYDVEIDKIN 57 (262)
Q Consensus 20 ~~~~~~~~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~n 57 (262)
.+.-.+.++....++..+...+..--|..+|...|++.
T Consensus 52 ~t~g~~~g~~~~~~~~~l~~~Yv~~An~~~D~l~~~i~ 89 (91)
T PF04341_consen 52 LTLGIVLGLGQIVFAWVLTWLYVRRANREFDPLARAIR 89 (91)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence 55545668888888888888999999999998887754
No 114
>TIGR02762 TraL_TIGR type IV conjugative transfer system protein TraL. This protein is part of the type IV secretion system for conjugative plasmid transfer. The function of the TraL protein is unknown.
Probab=24.12 E-value=2.9e+02 Score=20.22 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=18.7
Q ss_pred hhcCCCCCcccCCccCHHHHHHHHHHHHHHHHHHH
Q 044153 54 DKINKPDLPLASGDLSIGAGITITCTCLLMSLAIG 88 (262)
Q Consensus 54 D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l~l~ 88 (262)
|+.|+|.|-+ -++..|+ ....+...+|+...
T Consensus 7 ~~Ld~~~~i~---g~t~DE~-i~~~~~~~~Gi~~~ 37 (95)
T TIGR02762 7 KYLDEQPRIL---GLPLDEF-LPGATLFGIGILSG 37 (95)
T ss_pred CccCCCCeEE---EeeHHHH-HHHHHHHHHHHHHh
Confidence 5567777754 5788888 44444445555443
No 115
>PRK06099 F0F1 ATP synthase subunit I; Validated
Probab=23.16 E-value=3.7e+02 Score=20.99 Aligned_cols=30 Identities=17% Similarity=0.470 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCChHHHHHHHH
Q 044153 225 LITIIGHSTLAFLLLQRARNVDVSSQAAILSFYR 258 (262)
Q Consensus 225 ~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~~f~~ 258 (262)
+..++++++.+....++.+ ++++-.++||+
T Consensus 46 li~~LPn~~Fa~~aF~~~~----~~~~~~~sFy~ 75 (126)
T PRK06099 46 LSAFLPFCLFVYWIFFRKQ----KNSSKLTAFYR 75 (126)
T ss_pred HHHHHhHHHHHHHHHHhcc----chHHHHHHHHH
Confidence 4455666666655544433 67888899986
No 116
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=22.69 E-value=3.7e+02 Score=21.89 Aligned_cols=20 Identities=10% Similarity=0.077 Sum_probs=10.5
Q ss_pred hhHHHHHHHHHHHHHHhhcc
Q 044153 92 RSPPLISTIIMWFVLSSAYS 111 (262)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~Ys 111 (262)
+++..+.+++.+.+..++..
T Consensus 124 ~~~~~~~a~i~g~~~~~~~~ 143 (193)
T PF06738_consen 124 SWIDMIVAFILGLLVGLLRQ 143 (193)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555444
No 117
>KOG2513 consensus Protein required for meiotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=22.40 E-value=2.2e+02 Score=28.43 Aligned_cols=39 Identities=13% Similarity=0.138 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhchhhhhc---CCCCCcccC
Q 044153 27 GLLKAIVPGLLVNIYEVGVNQLYDVEIDKI---NKPDLPLAS 65 (262)
Q Consensus 27 ~~ll~~l~~~l~~~a~~~iNd~~D~~~D~~---n~~~RPl~s 65 (262)
|++.++-+.+-.....+.+|+......|.. +.-+||+|.
T Consensus 485 GyvVlFS~~~PLA~~~aLvnNv~eirsda~Kl~~~~krPfp~ 526 (647)
T KOG2513|consen 485 GYVVLFSCAFPLAAIFALVNNVIEIRSDALKLCLVLKRPFPR 526 (647)
T ss_pred hHHHHHHhHhhHHHHHHHHHHHhhhhHHHHHHHHhcCCCCcc
Confidence 677777777778888999999999999975 446789876
No 118
>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed
Probab=21.90 E-value=6.6e+02 Score=23.49 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhhhhchhh
Q 044153 36 LLVNIYEVGVNQLYDVEI 53 (262)
Q Consensus 36 ~l~~~a~~~iNd~~D~~~ 53 (262)
-++..--.++|++++.++
T Consensus 115 ~~~~~ie~a~N~Iw~v~~ 132 (412)
T PRK04214 115 ILLHTIEQTFNRIWRVNS 132 (412)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 455666778888887553
No 119
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=21.24 E-value=2.8e+02 Score=25.54 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhhhhhch
Q 044153 33 VPGLLVNIYEVGVNQLYDV 51 (262)
Q Consensus 33 l~~~l~~~a~~~iNd~~D~ 51 (262)
..+.+...++...||++..
T Consensus 309 ~~s~l~a~ss~~~~Di~~~ 327 (406)
T PF00474_consen 309 ADSLLLAISSIFSRDIYKP 327 (406)
T ss_dssp HHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHhhhhhhhhHHhhhc
Confidence 3344445556666777654
No 120
>PF11990 DUF3487: Protein of unknown function (DUF3487); InterPro: IPR021877 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 121 to 136 amino acids in length. This protein has a conserved RLN sequence motif.
Probab=21.22 E-value=3.9e+02 Score=20.63 Aligned_cols=40 Identities=13% Similarity=0.154 Sum_probs=21.6
Q ss_pred hhhcCCCCCcccCCccCHHHHHHHHHHHHH----HHHHHHHHhhhH
Q 044153 53 IDKINKPDLPLASGDLSIGAGITITCTCLL----MSLAIGIMLRSP 94 (262)
Q Consensus 53 ~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~----l~l~l~~~~~~~ 94 (262)
-|+.|++ |.+=+-+|..|......+..+ +|+.+++..+++
T Consensus 8 p~RLN~e--PvV~rGlT~~El~~~a~~~~~~g~~~gl~la~~~g~~ 51 (121)
T PF11990_consen 8 PDRLNRE--PVVFRGLTADELGLAAGVGFVAGLVVGLPLALLTGWW 51 (121)
T ss_pred hhhhcCC--CCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566652 334355788887655444443 344455555555
No 121
>PF09928 DUF2160: Predicted small integral membrane protein (DUF2160); InterPro: IPR018678 The members of this family of hypothetical prokaryotic proteins have no known function. It is thought that they are transmembrane proteins, but their function has not been inferred yet.
Probab=20.70 E-value=3.5e+02 Score=19.80 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=33.0
Q ss_pred hhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044153 170 VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVVYGALVIAGASSP 219 (262)
Q Consensus 170 ~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~~~~l~~~~~~~ 219 (262)
+.+++.- +..+.|.--++..-|+| +...++..+|+-+.+.+...+
T Consensus 24 vwe~~~P-~~~R~GfLpi~TTRGDR----LFIsLL~sA~I~L~Wlgl~~~ 68 (88)
T PF09928_consen 24 VWEIRSP-TVERKGFLPIETTRGDR----LFISLLGSAFIHLAWLGLVGP 68 (88)
T ss_pred HHHhcCC-CCCcCceecccCCCcch----hHHHHHHHHHHHHHHHHhcCc
Confidence 5555554 56778888888888884 666777788888888887664
Done!