Query 044153
Match_columns 262
No_of_seqs 161 out of 1773
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 20:49:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044153.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044153hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m0g_A Farnesyl diphosphate sy 21.7 28 0.00096 30.0 1.1 39 166-204 211-260 (297)
2 3kra_B Geranyl diphosphate syn 15.4 1.2E+02 0.004 25.7 3.5 42 166-207 74-116 (274)
3 3lom_A Geranyltranstransferase 15.0 46 0.0016 28.9 0.9 28 177-204 247-274 (313)
4 3p8r_A Geranyltranstransferase 15.0 40 0.0014 29.1 0.4 28 177-204 246-273 (302)
5 3ts7_A Geranyltranstransferase 14.4 45 0.0016 29.1 0.6 28 177-204 246-273 (324)
6 3lsn_A Geranyltranstransferase 14.3 44 0.0015 28.8 0.5 38 167-204 219-267 (304)
7 3p8l_A Geranyltranstransferase 14.0 46 0.0016 28.7 0.5 28 177-204 243-270 (302)
8 4f62_A Geranyltranstransferase 13.9 47 0.0016 28.9 0.6 28 177-204 239-266 (317)
9 3uca_A Geranyltranstransferase 13.1 49 0.0017 28.9 0.4 28 177-204 268-295 (324)
10 1rqj_A Geranyltranstransferase 12.7 73 0.0025 27.3 1.4 27 177-203 240-266 (299)
No 1
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=21.73 E-value=28 Score=30.00 Aligned_cols=39 Identities=23% Similarity=0.141 Sum_probs=22.1
Q ss_pred HHHhhhcCCChhh-----------hHHcCCcccceeechHHHHHHHHHHH
Q 044153 166 SGCQVLDMPDVDG-----------DKEHGIQTLSIALGKEKVLWLGVYML 204 (262)
Q Consensus 166 ~~~~~~~~~D~e~-----------D~~~G~~Tlpv~~G~~~~~~~~~~l~ 204 (262)
.|.+..|+.|+.+ |.+.|+.|+|+.+|.+.++....-+.
T Consensus 211 aFQI~DDilD~~~~~~~~GK~~g~Dl~~gK~T~p~l~~l~~a~~~~~~~~ 260 (297)
T 3m0g_A 211 AFQIADDILDVEGNEEAAGKRLGKDAEAHKATFVSLLGLAGAKSRAADLV 260 (297)
T ss_dssp HHHHHTTCC---------------------CCHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHhCCCccchhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 3555778877754 67789999999999998877655443
No 2
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=15.36 E-value=1.2e+02 Score=25.67 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=28.6
Q ss_pred HHHh-hhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHHH
Q 044153 166 SGCQ-VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLVV 207 (262)
Q Consensus 166 ~~~~-~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~ 207 (262)
.+++ .-|+++-++|.+.|++|.-..+|+..+....-.++..+
T Consensus 74 ~aSLIHDDI~~dD~d~RRG~pt~h~~~G~~~AIlaGD~Ll~~A 116 (274)
T 3kra_B 74 AAAYVHEHLPLTDGSRPVSKPAIQHKYGPNVELLTGDGIVPFG 116 (274)
T ss_dssp HHHHHHHTCCCSSSSSCCCSSCCCCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcccCCccCCCCCCchhhcChHHHHHHHHHHHHHH
Confidence 3444 77888333455799999999999987765544444433
No 3
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=15.04 E-value=46 Score=28.86 Aligned_cols=28 Identities=11% Similarity=0.037 Sum_probs=17.3
Q ss_pred hhhHHcCCcccceeechHHHHHHHHHHH
Q 044153 177 DGDKEHGIQTLSIALGKEKVLWLGVYML 204 (262)
Q Consensus 177 e~D~~~G~~Tlpv~~G~~~~~~~~~~l~ 204 (262)
..|.+.|+.|+|+.+|.+.++....-+.
T Consensus 247 g~Dl~~gK~T~p~l~~l~~a~~~a~~~~ 274 (313)
T 3lom_A 247 SSDQANQKTTFATLFNKQQLEEEIAVHY 274 (313)
T ss_dssp -------CCCHHHHSCHHHHHHHHHHHH
T ss_pred cchhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 4577899999999999999887655443
No 4
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=15.01 E-value=40 Score=29.07 Aligned_cols=28 Identities=25% Similarity=0.191 Sum_probs=17.1
Q ss_pred hhhHHcCCcccceeechHHHHHHHHHHH
Q 044153 177 DGDKEHGIQTLSIALGKEKVLWLGVYML 204 (262)
Q Consensus 177 e~D~~~G~~Tlpv~~G~~~~~~~~~~l~ 204 (262)
..|.+.|+.|+|+.+|.+.++..+.-+.
T Consensus 246 g~Dl~egK~T~p~l~~l~~a~~~a~~~~ 273 (302)
T 3p8r_A 246 GSDQELNKSTYPALLGLEGAQQKAHTLL 273 (302)
T ss_dssp -------CCCHHHHHHHHHHHHHHHHHH
T ss_pred chHHhcCCchHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999998887655443
No 5
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=14.44 E-value=45 Score=29.10 Aligned_cols=28 Identities=18% Similarity=0.117 Sum_probs=17.4
Q ss_pred hhhHHcCCcccceeechHHHHHHHHHHH
Q 044153 177 DGDKEHGIQTLSIALGKEKVLWLGVYML 204 (262)
Q Consensus 177 e~D~~~G~~Tlpv~~G~~~~~~~~~~l~ 204 (262)
..|.+.|+.|+|+.+|.+.++..+.-+.
T Consensus 246 g~Dl~egK~T~p~l~gle~a~~~a~~~~ 273 (324)
T 3ts7_A 246 GKDRDHNKPNYPALLGLSGAKEKAEEMH 273 (324)
T ss_dssp -------CCCHHHHHCHHHHHHHHHHHH
T ss_pred cchhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 4578899999999999999887665543
No 6
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=14.29 E-value=44 Score=28.84 Aligned_cols=38 Identities=18% Similarity=0.051 Sum_probs=22.4
Q ss_pred HHhhhcCCChh-----------hhHHcCCcccceeechHHHHHHHHHHH
Q 044153 167 GCQVLDMPDVD-----------GDKEHGIQTLSIALGKEKVLWLGVYML 204 (262)
Q Consensus 167 ~~~~~~~~D~e-----------~D~~~G~~Tlpv~~G~~~~~~~~~~l~ 204 (262)
|.+..|+.|+. .|.+.|+.|+|+.+|.+.++....-+.
T Consensus 219 FQI~DDilD~~~~~~~~GK~~g~Dl~egK~T~p~l~~l~~a~~~a~~~~ 267 (304)
T 3lsn_A 219 FQVQDDILDVESDTATLGKRQGADIARDKPTYPALLGLAAAKEYALELR 267 (304)
T ss_dssp HHHHHHHHHHHHHHHHC------------CCHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCChHHhCCCcccHHhcCCccHHHHHHHHHHHHHHHHHH
Confidence 44455666654 467889999999999999887655543
No 7
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=13.96 E-value=46 Score=28.73 Aligned_cols=28 Identities=18% Similarity=-0.022 Sum_probs=16.4
Q ss_pred hhhHHcCCcccceeechHHHHHHHHHHH
Q 044153 177 DGDKEHGIQTLSIALGKEKVLWLGVYML 204 (262)
Q Consensus 177 e~D~~~G~~Tlpv~~G~~~~~~~~~~l~ 204 (262)
.+|.+.|+.|+|+.+|.++++..+.-+.
T Consensus 243 g~Dl~egK~T~p~l~~l~~a~~~~~~~~ 270 (302)
T 3p8l_A 243 GRDEALNKSTYPALLGIAGAKDALTHQL 270 (302)
T ss_dssp --------CCHHHHHCHHHHHHHHHHHH
T ss_pred hhHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 5688899999999999999987655443
No 8
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=13.92 E-value=47 Score=28.90 Aligned_cols=28 Identities=25% Similarity=0.102 Sum_probs=18.5
Q ss_pred hhhHHcCCcccceeechHHHHHHHHHHH
Q 044153 177 DGDKEHGIQTLSIALGKEKVLWLGVYML 204 (262)
Q Consensus 177 e~D~~~G~~Tlpv~~G~~~~~~~~~~l~ 204 (262)
..|.+.|+.|+|+.+|.+.++..+.-+.
T Consensus 239 g~Dl~egK~T~p~l~gle~a~~~a~~~~ 266 (317)
T 4f62_A 239 FSDAEANKATYPKLLGLDGAKALVVRLH 266 (317)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred chHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 4577889999999999999987665544
No 9
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=13.12 E-value=49 Score=28.90 Aligned_cols=28 Identities=18% Similarity=0.121 Sum_probs=15.3
Q ss_pred hhhHHcCCcccceeechHHHHHHHHHHH
Q 044153 177 DGDKEHGIQTLSIALGKEKVLWLGVYML 204 (262)
Q Consensus 177 e~D~~~G~~Tlpv~~G~~~~~~~~~~l~ 204 (262)
..|.+.|+.|+|+.+|.++++..+.-+.
T Consensus 268 g~Dl~egK~T~p~l~al~~a~~~a~~~~ 295 (324)
T 3uca_A 268 HKDQESNKNNYITIFGLEECKKKCVNIT 295 (324)
T ss_dssp ---------CHHHHHCHHHHHHHHHHHH
T ss_pred chHhhcCCccHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999998887655443
No 10
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=12.65 E-value=73 Score=27.28 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=21.0
Q ss_pred hhhHHcCCcccceeechHHHHHHHHHH
Q 044153 177 DGDKEHGIQTLSIALGKEKVLWLGVYM 203 (262)
Q Consensus 177 e~D~~~G~~Tlpv~~G~~~~~~~~~~l 203 (262)
-+|.+.|+.|+|+.+|.+.+.....-+
T Consensus 240 g~Dl~~gK~T~p~l~~l~~a~~~~~~~ 266 (299)
T 1rqj_A 240 GADQQLGKSTYPALLGLEQARKKARDL 266 (299)
T ss_dssp THHHHHTCCCHHHHHCHHHHHHHHHHH
T ss_pred hhHHHcCCCcHHHHHHHHHHHHHHHHH
Confidence 367788999999999998876654444
Done!