Query 044153
Match_columns 262
No_of_seqs 161 out of 1773
Neff 7.8
Searched_HMMs 13730
Date Mon Mar 25 20:49:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044153.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/044153hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iwga7 f.35.1.1 (A:7-37,A:331 24.1 78 0.0057 23.2 6.2 15 35-49 104-118 (199)
2 d1iwga8 f.35.1.1 (A:513-566,A: 20.1 1.6E+02 0.012 21.7 7.8 22 30-51 117-138 (222)
3 d1rtra_ a.128.1.1 (A:) Farnesy 13.6 17 0.0013 28.9 -0.2 52 33-85 68-119 (290)
4 d1rqja_ a.128.1.1 (A:) Farnesy 12.0 64 0.0046 25.4 3.0 44 165-208 77-122 (299)
5 d1rqja_ a.128.1.1 (A:) Farnesy 10.6 36 0.0027 26.9 0.9 22 178-199 241-262 (299)
6 d2crga1 a.4.1.3 (A:8-64) Metas 7.3 70 0.0051 18.5 1.0 17 245-262 31-47 (57)
7 d1te7a_ b.122.1.7 (A:) Hypothe 5.4 1.1E+02 0.0082 20.1 1.3 16 175-190 11-26 (103)
8 d2axte1 f.23.38.1 (E:3-84) Cyt 4.4 4.2E+02 0.031 16.3 3.6 16 59-74 59-74 (82)
9 d1v74a_ d.243.1.1 (A:) Colicin 3.7 2.1E+02 0.015 18.8 1.7 13 61-73 3-15 (107)
10 d1v4ea_ a.128.1.1 (A:) Octopre 3.7 1.2E+02 0.0086 23.4 0.4 40 166-206 67-107 (280)
No 1
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=24.06 E-value=78 Score=23.18 Aligned_cols=15 Identities=40% Similarity=0.350 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhhhhh
Q 044153 35 GLLVNIYEVGVNQLY 49 (262)
Q Consensus 35 ~~l~~~a~~~iNd~~ 49 (262)
+..+..+.+...++.
T Consensus 104 gi~vd~~i~i~~~~~ 118 (199)
T d1iwga7 104 GLLVDDAIVVVENVE 118 (199)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHH
Confidence 334444444444443
No 2
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=20.11 E-value=1.6e+02 Score=21.70 Aligned_cols=22 Identities=18% Similarity=-0.037 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhch
Q 044153 30 KAIVPGLLVNIYEVGVNQLYDV 51 (262)
Q Consensus 30 l~~l~~~l~~~a~~~iNd~~D~ 51 (262)
+..+.+..+..+....+++.+.
T Consensus 117 ~i~l~Gi~v~~~i~~~~~~~~~ 138 (222)
T d1iwga8 117 LLTTIGLSAKNAILIVEFAKDL 138 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhHHHHHHHHhccc
Confidence 3344455566666666665443
No 3
>d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]}
Probab=13.64 E-value=17 Score=28.91 Aligned_cols=52 Identities=10% Similarity=0.031 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhhhhchhhhhcCCCCCcccCCccCHHHHHHHHHHHHHHHH
Q 044153 33 VPGLLVNIYEVGVNQLYDVEIDKINKPDLPLASGDLSIGAGITITCTCLLMSL 85 (262)
Q Consensus 33 l~~~l~~~a~~~iNd~~D~~~D~~n~~~RPl~sG~ls~~~a~~~~~~~~~l~l 85 (262)
.+.=++|.+.-+.+|+-|.|.|..++ .+|-...+.....+...+-.+...++
T Consensus 68 ~avEllH~asLIHDDI~d~D~~~~RR-g~pt~~~~~g~~~Ail~Gd~l~~~a~ 119 (290)
T d1rtra_ 68 IALEMIHTYSLIHDDLPAMDNDDYRR-GKLTNHKVYGEWTAILAGDALLTKAF 119 (290)
T ss_dssp HHHHHHHHHHHHHHHSTTTTCCSEET-TEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcchhhhhhhhhhh-cchhhHHHhhhhHHHHcCcchhHHHH
Confidence 34557899999999999888765422 23333334444445444433333333
No 4
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=12.04 E-value=64 Score=25.37 Aligned_cols=44 Identities=18% Similarity=0.348 Sum_probs=31.9
Q ss_pred HHHHh-hhcCCChhh-hHHcCCcccceeechHHHHHHHHHHHHHHH
Q 044153 165 CSGCQ-VLDMPDVDG-DKEHGIQTLSIALGKEKVLWLGVYMLLVVY 208 (262)
Q Consensus 165 ~~~~~-~~~~~D~e~-D~~~G~~Tlpv~~G~~~~~~~~~~l~~~~~ 208 (262)
-..++ .-|++|.+. |.++|.+|.-..+|.+.+....-.++..++
T Consensus 77 H~asLiHDDI~d~d~~~~RRG~pt~h~~~G~~~AIl~Gd~l~~~a~ 122 (299)
T d1rqja_ 77 HAYSLIHDDLPAMDDDDLRRGLPTCHVKFGEANAILAGDALQTLAF 122 (299)
T ss_dssp HHHHHHHHTSTTTTCCCEETTEECHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccchhhhhhhcccccccceeeeCcchhhhhcchHHHHHH
Confidence 34444 778888776 579999999999999988765554444433
No 5
>d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]}
Probab=10.58 E-value=36 Score=26.94 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=18.6
Q ss_pred hhHHcCCcccceeechHHHHHH
Q 044153 178 GDKEHGIQTLSIALGKEKVLWL 199 (262)
Q Consensus 178 ~D~~~G~~Tlpv~~G~~~~~~~ 199 (262)
.|.+.|+.|+|+.+|.+.+...
T Consensus 241 ~Dl~egK~Tlp~i~~le~a~~~ 262 (299)
T d1rqja_ 241 ADQQLGKSTYPALLGLEQARKK 262 (299)
T ss_dssp HHHHHTCCCHHHHHCHHHHHHH
T ss_pred hHHHCCChhHHHHHHHHHHHHH
Confidence 5888899999999999887544
No 6
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.31 E-value=70 Score=18.55 Aligned_cols=17 Identities=29% Similarity=0.763 Sum_probs=13.5
Q ss_pred ccCCChHHHHHHHHhhcC
Q 044153 245 VDVSSQAAILSFYRFIWK 262 (262)
Q Consensus 245 ~d~~~~~~~~~f~~~~~~ 262 (262)
+.-++.++|..||. .||
T Consensus 31 v~~Ks~~~~v~fYY-~~K 47 (57)
T d2crga1 31 LPWKSLTSIIEYYY-MWK 47 (57)
T ss_dssp CSSSCHHHHHHHHH-HHH
T ss_pred cCCCCHHHHHHHHH-HHh
Confidence 46788999999996 565
No 7
>d1te7a_ b.122.1.7 (A:) Hypothetical protein YqfB {Escherichia coli [TaxId: 562]}
Probab=5.39 E-value=1.1e+02 Score=20.14 Aligned_cols=16 Identities=25% Similarity=0.329 Sum_probs=12.9
Q ss_pred ChhhhHHcCCccccee
Q 044153 175 DVDGDKEHGIQTLSIA 190 (262)
Q Consensus 175 D~e~D~~~G~~Tlpv~ 190 (262)
-.|.|..+|+||+-+|
T Consensus 11 Rfe~dIlsGkKTITIR 26 (103)
T d1te7a_ 11 RFQDDILAGRKTITIR 26 (103)
T ss_dssp HHHHHHHTCCCEEEEE
T ss_pred hhhHHHhcCCceEEec
Confidence 3578999999998765
No 8
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=4.41 E-value=4.2e+02 Score=16.26 Aligned_cols=16 Identities=13% Similarity=0.368 Sum_probs=12.0
Q ss_pred CCCcccCCccCHHHHH
Q 044153 59 PDLPLASGDLSIGAGI 74 (262)
Q Consensus 59 ~~RPl~sG~ls~~~a~ 74 (262)
++-|+.+++.+.++-+
T Consensus 59 q~~pli~~Rf~~~~ql 74 (82)
T d2axte1 59 RSIPLVTDRFEAKQQV 74 (82)
T ss_dssp CSCCCCCCSSSHHHHH
T ss_pred ccCcccccccCHHHHH
Confidence 4569999999887643
No 9
>d1v74a_ d.243.1.1 (A:) Colicin D nuclease domain {Escherichia coli [TaxId: 562]}
Probab=3.74 E-value=2.1e+02 Score=18.84 Aligned_cols=13 Identities=38% Similarity=0.307 Sum_probs=9.1
Q ss_pred CcccCCccCHHHH
Q 044153 61 LPLASGDLSIGAG 73 (262)
Q Consensus 61 RPl~sG~ls~~~a 73 (262)
.|+.||++++++.
T Consensus 3 ~pLds~~ftrkqL 15 (107)
T d1v74a_ 3 DPLDSGRFSRKQL 15 (107)
T ss_dssp CTTCBTTBCHHHH
T ss_pred CCccCccchHHHH
Confidence 4777777777764
No 10
>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]}
Probab=3.71 E-value=1.2e+02 Score=23.41 Aligned_cols=40 Identities=18% Similarity=0.211 Sum_probs=27.8
Q ss_pred HHHh-hhcCCChhhhHHcCCcccceeechHHHHHHHHHHHHH
Q 044153 166 SGCQ-VLDMPDVDGDKEHGIQTLSIALGKEKVLWLGVYMLLV 206 (262)
Q Consensus 166 ~~~~-~~~~~D~e~D~~~G~~Tlpv~~G~~~~~~~~~~l~~~ 206 (262)
..++ .-|+.| ++|.++|.+|.-..+|...+....-.++..
T Consensus 67 ~asLIhDDi~D-~s~~RRG~pt~h~~~g~~~ail~gd~l~~~ 107 (280)
T d1v4ea_ 67 LASLLHDDVID-GARFRRGKETINFMYGDKAAVAAGDLVLVS 107 (280)
T ss_dssp HHHHHHHHHHH-TCSEETTEECHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHhh-hcccccccchhhhccchhhhhhhHHHHHHh
Confidence 3444 566666 567889999999999998886554444433
Done!