Query 044156
Match_columns 288
No_of_seqs 132 out of 736
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 11:56:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044156.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044156hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01031 Dynamin_M: Dynamin ce 100.0 1E-65 2.2E-70 472.0 21.3 266 7-285 7-282 (295)
2 KOG0446 Vacuolar sorting prote 100.0 2E-46 4.3E-51 372.9 23.8 264 5-282 222-494 (657)
3 COG0699 Predicted GTPases (dyn 98.7 7.7E-07 1.7E-11 87.6 15.9 239 4-284 126-368 (546)
4 KOG0447 Dynamin-like GTP bindi 96.0 0.37 8E-06 47.8 15.5 73 6-86 507-585 (980)
5 cd05131 RasGAP_IQGAP2 IQGAP2 i 85.2 6.5 0.00014 37.1 9.3 219 44-286 29-277 (339)
6 PF04583 Baculo_p74: Baculovir 70.8 2.8 6.1E-05 37.5 2.0 55 45-99 13-68 (249)
7 PF05823 Gp-FAR-1: Nematode fa 67.9 9.9 0.00021 31.6 4.6 59 71-136 43-101 (154)
8 PF13080 DUF3926: Protein of u 67.6 9.2 0.0002 24.5 3.2 33 76-108 2-35 (44)
9 cd05133 RasGAP_IQGAP1 IQGAP1 i 66.7 53 0.0012 31.2 9.8 216 44-285 29-276 (360)
10 PF15011 CK2S: Casein Kinase 2 57.6 1.2E+02 0.0025 25.6 9.5 76 191-268 8-83 (168)
11 COG2361 Uncharacterized conser 48.5 15 0.00032 29.1 2.3 44 47-96 63-114 (117)
12 PF08429 PLU-1: PLU-1-like pro 48.1 2.3E+02 0.0049 26.2 15.4 130 92-229 88-242 (335)
13 PRK09343 prefoldin subunit bet 47.8 54 0.0012 26.0 5.5 55 77-139 65-119 (121)
14 KOG1895 mRNA cleavage and poly 45.8 2.6E+02 0.0057 30.2 11.4 182 58-272 703-896 (957)
15 cd05132 RasGAP_GAPA GAPA is an 36.8 3.5E+02 0.0077 25.2 14.4 212 44-286 28-272 (331)
16 COG3186 Phenylalanine-4-hydrox 35.8 45 0.00098 30.1 3.5 46 149-194 68-118 (291)
17 COG5104 PRP40 Splicing factor 35.5 3.6E+02 0.0078 26.6 9.6 20 140-159 356-375 (590)
18 COG3716 ManZ Phosphotransferas 33.3 30 0.00064 31.4 2.0 20 34-53 52-71 (269)
19 PF04286 DUF445: Protein of un 29.1 4.5E+02 0.0097 24.0 16.2 42 239-280 288-329 (367)
20 PF09597 IGR: IGR protein moti 29.1 75 0.0016 21.9 3.0 39 83-126 18-56 (57)
21 cd05137 RasGAP_CLA2_BUD2 CLA2/ 27.4 3.8E+02 0.0082 25.9 8.6 190 45-273 132-333 (395)
22 cd05130 RasGAP_Neurofibromin N 27.0 4E+02 0.0087 25.0 8.5 190 44-270 69-264 (329)
23 PF02477 Nairo_nucleo: Nucleoc 25.2 2.3E+02 0.0049 27.0 6.3 95 50-153 215-316 (442)
24 PF05008 V-SNARE: Vesicle tran 24.8 2.3E+02 0.005 20.0 5.3 45 86-130 28-72 (79)
25 PF04340 DUF484: Protein of un 24.4 1.6E+02 0.0034 25.7 5.1 58 36-97 10-72 (225)
26 KOG4484 Uncharacterized conser 23.6 2.3E+02 0.005 24.1 5.5 43 58-101 22-66 (199)
27 PF09545 RE_AccI: AccI restric 22.7 3.1E+02 0.0067 25.5 6.5 87 117-208 52-144 (366)
28 PF10835 DUF2573: Protein of u 22.6 68 0.0015 23.6 1.9 30 61-90 23-53 (82)
29 cd00619 Terminator_NusB Transc 21.8 3.2E+02 0.0069 21.3 6.0 64 60-126 48-112 (130)
30 COG3143 CheZ Chemotaxis protei 21.8 5.3E+02 0.011 22.3 11.4 133 82-226 18-170 (217)
31 PRK11103 PTS system mannose-sp 21.7 60 0.0013 29.8 1.9 19 35-53 59-77 (282)
32 PF01706 FliG_C: FliG C-termin 21.4 2.3E+02 0.0049 21.7 4.9 62 58-125 38-102 (110)
33 cd00361 arom_aa_hydroxylase Bi 21.3 1.3E+02 0.0028 26.7 3.8 46 149-194 31-81 (221)
34 PLN03132 NADH dehydrogenase (u 21.2 2.2E+02 0.0048 28.1 5.8 91 34-135 358-451 (461)
35 cd07648 F-BAR_FCHO The F-BAR ( 20.8 5.3E+02 0.011 22.9 7.9 21 166-186 238-259 (261)
36 PF14523 Syntaxin_2: Syntaxin- 20.8 2.5E+02 0.0055 20.7 5.0 19 87-105 7-25 (102)
37 PRK11913 phhA phenylalanine 4- 20.8 1.3E+02 0.0028 27.6 3.8 45 149-193 53-102 (275)
No 1
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=100.00 E-value=1e-65 Score=471.97 Aligned_cols=266 Identities=23% Similarity=0.324 Sum_probs=237.4
Q ss_pred CCCcccCCCeEEEecCCcchhhhccCCcccHHHHHHHHHHHhccCC-CCCCCCCcchHHHHHHHHHHHHHHhhccchhHH
Q 044156 7 GSPKTADIPWVALIGQSVSIATTQSGSEISLETAWTAESESLKSIL-IGAPQSQLGRIALADDLAQLIRKRMKVRVPNLL 85 (288)
Q Consensus 7 g~~~~L~lG~~~V~nr~q~~~~~di~~~~s~~~a~~~E~~FF~~~p-~~~~~~~~G~~~L~~~L~~lL~~hI~~~LP~l~ 85 (288)
|+++||+||||||||||| +||++++|+++|++.|++||++|| |+.++++|||++|+.+|+++|++||+++||.|+
T Consensus 7 n~~~pLklGy~~V~nrsq----~di~~~~s~~~a~~~E~~fF~~~~~~~~~~~~~G~~~L~~~L~~~L~~~I~~~LP~l~ 82 (295)
T PF01031_consen 7 NKVIPLKLGYVGVKNRSQ----QDINDGKSIEEARQKEKEFFSNHPWYSSPADRCGTPALRKRLSELLVEHIRKSLPSLK 82 (295)
T ss_dssp TSSS--TT-EEEE--S-H----HHHHTTEEHHHHHHHHHHHHHHSTTTGGGGGGSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeeccCCCeEEEecCCc----cccccCCCHHHHHHHHHHHHhcccccCCcccccchHHHHHHHHHHHHHHHHHhCcHHH
Confidence 446999999999999999 999999999999999999999998 888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHHHHHHHHHhhccCCC---------CcchhHhhhhcchhhhhcc
Q 044156 86 SGLQGKSQIVQDELVRLGEQMVQSVEGTRSLSLELCREFEDKFLQLITTGEG---------SGWKIVASFEGNFPNRIKQ 156 (288)
Q Consensus 86 ~~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~ll~~i~~F~~~~~~~l~G~~~---------ggari~~~f~~~F~~~i~~ 156 (288)
.+|+++|.+++++|.+||+++++++++++.+|++++++|++.++++++|.+. ||+||+++|++.|...+..
T Consensus 83 ~~I~~~l~~~~~eL~~lG~~~~~~~~~~~~~l~~~~~~f~~~~~~~i~G~~~~~~~~~~l~~~ari~~~f~~~~~~~~~~ 162 (295)
T PF01031_consen 83 SEIQKKLQEAEKELKRLGPPRPETPEEQRAYLLQIISKFSRIFKDAIDGEYSDEFSTNELRGGARIRYIFNEWFDKFLEK 162 (295)
T ss_dssp HHHHHHHHHHHHHHHTHHHCSSSCHHHHHHHHHHHHHHHHHHHHHHHTT-------TTS--HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccchhhHHHHHHHhhhhhhhhh
Confidence 9999999999999999999998788899999999999999999999999983 6899999999999999999
Q ss_pred CCCCCccChhhHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhhchHHHHHHhhhhhhhHHHHHHHHHHHHHhccCCCC
Q 044156 157 LPLDRRFDINNVQRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLSVDEVIEPLKHVHRVLVGMVSAAANATPGL 236 (288)
Q Consensus 157 ~~~~~~~~~~~I~~~i~~~~G~~~~~fvp~~afe~li~~~i~~l~~Ps~~~v~~v~~~l~~V~~~l~~~v~~~~~~~~~~ 236 (288)
+++.+..+.++|+++|++++|+++|+|+|+.+|+.||+++|++|++||.+|++. |++++.+++.+++. ++|
T Consensus 163 ~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~Pa~~cv~~-------V~~~l~~i~~~~~~--~~~ 233 (295)
T PF01031_consen 163 IDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEPALQCVEE-------VHEELQRIVEQVLE--KEF 233 (295)
T ss_dssp TSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHHHHHHHHH-------HHHHHHHHHHHHHC--HHH
T ss_pred hccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhHHHHHHHH-------HHHHHHHHHHhhcc--hhc
Confidence 865555556999999999999999999999999999999999999999999999 88888999999887 699
Q ss_pred CCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCchhhhhhh
Q 044156 237 GRYPLFKREVVAIASAALDGFKNEARKMVVALVDMERAFVPPQHFIRLV 285 (288)
Q Consensus 237 ~~fp~L~~~i~~~i~~~L~~~~~~a~~~v~~li~~E~~~Intnh~~~~~ 285 (288)
.+||.|++++.+++.++++++.++|.++|+++|+||.+||||+|+.++.
T Consensus 234 ~~fp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~~E~~~i~T~~~~f~~ 282 (295)
T PF01031_consen 234 ERFPNLKEAIKEAVQQLLEECREPAKEMIENLIDMELSYINTQHPDFLG 282 (295)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--TTSTT--T
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999998764
No 2
>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=100.00 E-value=2e-46 Score=372.87 Aligned_cols=264 Identities=30% Similarity=0.408 Sum_probs=248.9
Q ss_pred CCCCCcccCCCeEEEecCCcchhhhccCCcccHHHHHHHHHHHhccCC-CCCCCCCcchHHHHHHHHHHHHHHhhccchh
Q 044156 5 NQGSPKTADIPWVALIGQSVSIATTQSGSEISLETAWTAESESLKSIL-IGAPQSQLGRIALADDLAQLIRKRMKVRVPN 83 (288)
Q Consensus 5 n~g~~~~L~lG~~~V~nr~q~~~~~di~~~~s~~~a~~~E~~FF~~~p-~~~~~~~~G~~~L~~~L~~lL~~hI~~~LP~ 83 (288)
..|+.+||++||++|+||+| +||+.++++.+|+.+|..||.+|| |+.++.++|+++|+++|+..|..||+.+||.
T Consensus 222 L~g~~~~l~~g~v~vvnR~q----~di~~~k~~~~al~~e~~~f~~~p~y~~~~~~~g~p~La~~L~~~l~~hi~~~lP~ 297 (657)
T KOG0446|consen 222 LVGRPITLKVGYVGVVNRSQ----SIIDFKKSILEALNDEVPSFESVPSYPILLTISGVPYLALLLPGYLQSHIRDQLPE 297 (657)
T ss_pred ecCCccccccceeeeeccch----hhhhhhhhHHHHHHhhhhhhhccccccccccccCcchHHHHHHHHHHHHHHhcCcH
Confidence 56888999999999999999 999999999999999999999999 9999988999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHHHHHHHHHhhccCC--------CCcchhHhhhhcchhhhhc
Q 044156 84 LLSGLQGKSQIVQDELVRLGEQMVQSVEGTRSLSLELCREFEDKFLQLITTGE--------GSGWKIVASFEGNFPNRIK 155 (288)
Q Consensus 84 l~~~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~ll~~i~~F~~~~~~~l~G~~--------~ggari~~~f~~~F~~~i~ 155 (288)
|+..|+.++.++++||..||. +++..++...++.++++|+..|...+.|.. +|||||+++||+.|+..+.
T Consensus 298 l~~~i~~~~~~~~~el~~~g~--~~~~~~~~~~ll~~i~~~~~~~~~~v~g~~~~~~~~elsggari~~~F~~~f~~~i~ 375 (657)
T KOG0446|consen 298 LKTKINKLLEKYQDELNRIGA--VDVDLANSAALLAIIREDPRGLRTGVIGKLDLVPTKALSGGARINYPFHGGFPGVIK 375 (657)
T ss_pred HHHHHHHHHHHHHHHHHHhcc--cCCccchhhHHHHHHHHHHHHHHHhhcccccccchhcccchhhhhhhhhhccchhhh
Confidence 999999999999999999997 333445688999999999999999998883 5889999999999999999
Q ss_pred cCCCCCccChhhHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhhchHHHHHHhhhhhhhHHHHHHHHHHHHHhccCCC
Q 044156 156 QLPLDRRFDINNVQRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLSVDEVIEPLKHVHRVLVGMVSAAANATPG 235 (288)
Q Consensus 156 ~~~~~~~~~~~~I~~~i~~~~G~~~~~fvp~~afe~li~~~i~~l~~Ps~~~v~~v~~~l~~V~~~l~~~v~~~~~~~~~ 235 (288)
.+++.+.....+|++++.|++|.++++|+|+.+|+.+|+++|+++++|+++||+. |++++.+++++|...+ .
T Consensus 376 ~i~~~~~~~~~~i~~~i~~~~G~~~~lf~p~~afe~lvk~~i~~l~~p~l~~v~~-------v~~el~~~~~~~~~~~-~ 447 (657)
T KOG0446|consen 376 KLPPDRKLLGQNIEKLVSEASGIRPSLFVPESSFESLVKGQIQSLRDPSLKCVEE-------VHRELVRIVADSIRAT-E 447 (657)
T ss_pred cCCcchhhhHHHHHHHHHhccCCCccccCChHHHHHHHHHHHHHHhhhHHHHHHH-------HHHHHHHHHHHHhhhH-H
Confidence 9977777777999999999999999999999999999999999999999999999 8999999999998733 7
Q ss_pred CCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCchhhh
Q 044156 236 LGRYPLFKREVVAIASAALDGFKNEARKMVVALVDMERAFVPPQHFI 282 (288)
Q Consensus 236 ~~~fp~L~~~i~~~i~~~L~~~~~~a~~~v~~li~~E~~~Intnh~~ 282 (288)
+.|||.|++++..++.++++++.++++++|.++|+||.+||||+|..
T Consensus 448 l~rfp~l~~~~~~~~~~~~~~~~~~t~~~v~~~i~~e~~yinT~h~d 494 (657)
T KOG0446|consen 448 LKRFPVLYSELVEIASSLIAEGLDETKKAVKNLIDLEQSYLNTDHPD 494 (657)
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcChh
Confidence 99999999999999999999999999999999999999999999965
No 3
>COG0699 Predicted GTPases (dynamin-related) [General function prediction only]
Probab=98.66 E-value=7.7e-07 Score=87.61 Aligned_cols=239 Identities=15% Similarity=0.117 Sum_probs=184.0
Q ss_pred CCCCCCcc--cCCCeEEEecCCcchhhhccCCcccHHHHHHHHHHHhccCC-CCCCCCCcchHHHHHHHHHHHHHHhhcc
Q 044156 4 LNQGSPKT--ADIPWVALIGQSVSIATTQSGSEISLETAWTAESESLKSIL-IGAPQSQLGRIALADDLAQLIRKRMKVR 80 (288)
Q Consensus 4 ~n~g~~~~--L~lG~~~V~nr~q~~~~~di~~~~s~~~a~~~E~~FF~~~p-~~~~~~~~G~~~L~~~L~~lL~~hI~~~ 80 (288)
.|.|.... +..|++.++|+.+ .|+...++...+...|..+|..+| |.+....+|++++...++.++..|+...
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (546)
T COG0699 126 LNGGTNLTLILGNGDVLVVDALE----TDIQLLKTALEALVKELEYFAEHPLLEDNEKLVLLPYLKKLLSKILELHLRLL 201 (546)
T ss_pred HhcCCceeeeeccccccccCchh----HHHHhcccchHHHHHHHHHhhcCccccccccccCChhhhhhhhhhHHHHHHhc
Confidence 35555556 8999999999999 999999999999999999999998 9888889999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHHHHHHHHHhhccCCCCcchhHhhhhcchhhhhccC-CC
Q 044156 81 VPNLLSGLQGKSQIVQDELVRLGEQMVQSVEGTRSLSLELCREFEDKFLQLITTGEGSGWKIVASFEGNFPNRIKQL-PL 159 (288)
Q Consensus 81 LP~l~~~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~ll~~i~~F~~~~~~~l~G~~~ggari~~~f~~~F~~~i~~~-~~ 159 (288)
.|...........+ .++.+ .++.....|...++....|. |+... +..+ +.
T Consensus 202 ~~~~~~~~~~~~~~------~~~~~----------~~~~~~~~~~~~~~~~~~~~-----~~~~~--------~~~~~~l 252 (546)
T COG0699 202 PKYDKLQDVIQLSQ------DLFEN----------EVLAVIQTLLKRLSELVRGA-----RIRLN--------IILFSDL 252 (546)
T ss_pred ChhhhhHhhhcccc------cccch----------HHHHHHHHHHHHHHHHhccc-----hhhhh--------hcccchH
Confidence 99987777666554 22221 56777777777776444433 44433 1111 12
Q ss_pred CCccChhhHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhhchHHHHHHhhhhhhhHHHHHHHHHHHHHhccCCCCCCC
Q 044156 160 DRRFDINNVQRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLSVDEVIEPLKHVHRVLVGMVSAAANATPGLGRY 239 (288)
Q Consensus 160 ~~~~~~~~I~~~i~~~~G~~~~~fvp~~afe~li~~~i~~l~~Ps~~~v~~v~~~l~~V~~~l~~~v~~~~~~~~~~~~f 239 (288)
.+..+ .++.....+..|..+..|.....+...+..++..+..++.+|+.. +.+++.++...... ......|
T Consensus 253 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~-~~~~~~~ 323 (546)
T COG0699 253 EEVSD-SPVLLKELASKGERPSLLSGLTLLDTLVETPIGQFDTQINQLLRK-------LISELVRILLKELE-SASSSPF 323 (546)
T ss_pred HHhhh-hhhHHHHHcccCCCccccccccchhhhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhc-ccccccc
Confidence 22222 455555666777777688999999999999999999999877776 66666665444332 2456789
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCchhhhhh
Q 044156 240 PLFKREVVAIASAALDGFKNEARKMVVALVDMERAFVPPQHFIRL 284 (288)
Q Consensus 240 p~L~~~i~~~i~~~L~~~~~~a~~~v~~li~~E~~~Intnh~~~~ 284 (288)
|.+...+...+..............+...++.+..||++.|...+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (546)
T COG0699 324 PKLSEALEEVVNQLKNKVDSGLESGLLAIIDIEERYINTKHPLFL 368 (546)
T ss_pred hhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcCcchH
Confidence 999999999999999999999999999999999999998886654
No 4
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=95.96 E-value=0.37 Score=47.82 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=55.7
Q ss_pred CCCCcccC-CCeEEEec-CCcchhhhccCCcccHHHHHHHHHHHhccCC-CCC--C-CCCcchHHHHHHHHHHHHHHhhc
Q 044156 6 QGSPKTAD-IPWVALIG-QSVSIATTQSGSEISLETAWTAESESLKSIL-IGA--P-QSQLGRIALADDLAQLIRKRMKV 79 (288)
Q Consensus 6 ~g~~~~L~-lG~~~V~n-r~q~~~~~di~~~~s~~~a~~~E~~FF~~~p-~~~--~-~~~~G~~~L~~~L~~lL~~hI~~ 79 (288)
.|+-.|.+ ||||+|+- ||- ...|+++-++-|.+||+++- ++. + ++.+.+.+|.-..|.-....++.
T Consensus 507 eGKLFPMKALGYfaVVTGrGn--------ssdSIdaIR~YEE~FF~nSkLl~~~vlkphQvTtRNlSLAVSDcFWkMVRe 578 (980)
T KOG0447|consen 507 EGKLFPMKALGYFAVVTGKGN--------SSESIEAIREYEEEFFQNSKLLKTSMLKAHQVTTRNLSLAVSDCFWKMVRE 578 (980)
T ss_pred hcCccchhhcceeEEEecCCC--------cchhHHHHHHHHHHHhhhhHHHHhhccchhhhcccchhHHHHHHHHHHHHH
Confidence 35666665 89999986 444 34588999999999999985 542 2 48899999999999999988877
Q ss_pred cchhHHH
Q 044156 80 RVPNLLS 86 (288)
Q Consensus 80 ~LP~l~~ 86 (288)
++-+--+
T Consensus 579 siEqQaD 585 (980)
T KOG0447|consen 579 SVEQQAD 585 (980)
T ss_pred HHHHHHH
Confidence 6554333
No 5
>cd05131 RasGAP_IQGAP2 IQGAP2 is a member of the IQGAP family that contains a calponin-homology (CH) domain which binds F-actin, IQGAP-specific repeat, a single WW domain, four IQ motifs which mediate interactions with calmodulin, and a Ras-GTPase-activating protein (GAP)-related domain that binds Rho family GTPases. IQGAP2 and IQGAP3 play important roles in the regulation of the cytoskeleton for axon outgrowth in hippocampal neurons and are thought to stay in a common regulatory pathway. The results of RNA interference studies indicated that IQGAP3 partially compensates functions of IQGAP2, but has lesser ability than IQGAP2 to promote axon outgrowth in hippocampal neuron. Morevover, IQGAP2 is required for the cadherin-mediated cell-to-cell adhesion in Xenopus laevis embryos.
Probab=85.23 E-value=6.5 Score=37.05 Aligned_cols=219 Identities=12% Similarity=0.092 Sum_probs=107.6
Q ss_pred HHHHhccCC-CCCCC-----CCcchHHHHHHHHHHHHHHhhc-cc-----h-hHHHHHHHHHHHHHHHHHHhCCCCC---
Q 044156 44 ESESLKSIL-IGAPQ-----SQLGRIALADDLAQLIRKRMKV-RV-----P-NLLSGLQGKSQIVQDELVRLGEQMV--- 107 (288)
Q Consensus 44 E~~FF~~~p-~~~~~-----~~~G~~~L~~~L~~lL~~hI~~-~L-----P-~l~~~I~~~l~~~~~eL~~lg~~~~--- 107 (288)
..+||..++ |..+. .-.|..+|..-|..++.+.|.. .| | .|-.++-.+.....-....++..++
T Consensus 29 ~~d~~r~Ns~~~km~~~y~r~~~g~~yLk~lL~p~v~~ii~~~~ldlE~dP~~Iy~~~i~~~e~~tG~~S~~~~~v~~e~ 108 (339)
T cd05131 29 IQDIVTGNPTVIKMVVSFNRGARGQNTLRQLLAPVVKEIIEDKSLIINTNPVEVYKAWVNQLETATGEASKLPYDVTTEQ 108 (339)
T ss_pred HHHHhccCcHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhcCcccCCcCCHHHHHHHHHHHHHHhhCCcccCCCCCCHHH
Confidence 567888886 97642 3488999999888888886642 23 3 2333222221111111112222221
Q ss_pred --CCHhH------HHHHHHHHHHHHHHHHHHhhccCCCCcchhHhhhhcchhhhhccCCCCCccChhhHHHHHHH---hc
Q 044156 108 --QSVEG------TRSLSLELCREFEDKFLQLITTGEGSGWKIVASFEGNFPNRIKQLPLDRRFDINNVQRIVLE---AD 176 (288)
Q Consensus 108 --~~~~~------~~~~ll~~i~~F~~~~~~~l~G~~~ggari~~~f~~~F~~~i~~~~~~~~~~~~~I~~~i~~---~~ 176 (288)
.+++- ....|..++.+|.+.+.+.++--+. -|+++.+..+....+.+|-... +++..++-. .+
T Consensus 109 Ai~~pev~~~~~~~l~~L~~~~~~fl~~I~~sv~~~P~---~lR~ick~i~~~~~~kFP~~~~---~~~~~~VG~fiflR 182 (339)
T cd05131 109 ALLHPEVRAKLESSIQVLRSVTDKVLGSIMSSLDLIPY---GMRYIAKVLKNSLHEKFPDATE---DELLKIVGNLLYYR 182 (339)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHCCCCch---HHHHHHHHHHHHHH
Confidence 01111 1234666677777777666664432 3666666555555555542211 122221100 01
Q ss_pred CCCCCCCCCHHHHHHHHHHH-HHhhhchHHHHHHhhhhhhhHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHH
Q 044156 177 GYQPYLISPEKGLRSLIKGV-LELAKEPSRLSVDEVIEPLKHVHRVLVGMVSAAANATPGLGRYPLFKREVVAIASAALD 255 (288)
Q Consensus 177 G~~~~~fvp~~afe~li~~~-i~~l~~Ps~~~v~~v~~~l~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~i~~~i~~~L~ 255 (288)
=..|..+.|+. |.. +... =..+...+.+.+.. +..+|.. +++. ..|+. +..-...+..++.
T Consensus 183 fi~PAIvsPe~-f~i-i~~~~~~~~~~~~rrnL~~-------iaKvLq~----lan~-~~F~~----~e~~m~pLN~fi~ 244 (339)
T cd05131 183 YMNPAIVAPDG-FDI-IDMTAGGQIHSDQRRNLGS-------VAKVLQH----AASN-KLFEG----ENDHLSSMNSYLS 244 (339)
T ss_pred HccchhcCchh-cCc-cccccCCCCCHHHHhhHHH-------HHHHHHH----HHCC-CCCCC----cChHHHhHHHHHH
Confidence 12344444433 211 1000 00011112223333 4444444 4331 23432 2223556788999
Q ss_pred HhHHHHHHHHHHHHHHhh--cCCCchhhhhhhh
Q 044156 256 GFKNEARKMVVALVDMER--AFVPPQHFIRLVQ 286 (288)
Q Consensus 256 ~~~~~a~~~v~~li~~E~--~~Intnh~~~~~~ 286 (288)
+.....++++..+++.+- .+.+.+.|..+++
T Consensus 245 ~~~~~~~~fl~~l~~V~d~e~~~~~d~Y~dl~~ 277 (339)
T cd05131 245 QTYQKFRKFFQAACDVPEPEEKFNVDEYSDLVT 277 (339)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHcChhHHHHHHh
Confidence 999999999999999874 4677777766643
No 6
>PF04583 Baculo_p74: Baculoviridae p74 conserved region; InterPro: IPR007663 Baculoviruses are distinct from other virus families in that there are two viral phenotypes: budded virus (BV) and occlusion-derived virus (ODV). BVs disseminate viral infection throughout the tissues of the host and ODVs transmit baculovirus between insect hosts. GFP tagging experiments implicate p74 as an ODV envelope protein [, ].; GO: 0019058 viral infectious cycle
Probab=70.83 E-value=2.8 Score=37.52 Aligned_cols=55 Identities=25% Similarity=0.227 Sum_probs=48.1
Q ss_pred HHHhccCC-CCCCCCCcchHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHH
Q 044156 45 SESLKSIL-IGAPQSQLGRIALADDLAQLIRKRMKVRVPNLLSGLQGKSQIVQDEL 99 (288)
Q Consensus 45 ~~FF~~~p-~~~~~~~~G~~~L~~~L~~lL~~hI~~~LP~l~~~I~~~l~~~~~eL 99 (288)
.+|+++|+ |.++.-.+|...|...|...|.+.+++-+|.|++.+-..-...-..|
T Consensus 13 ~~Fled~~~i~~I~~d~Gfd~l~~~lk~mlkkin~~liP~Lk~~ll~~s~~vt~rl 68 (249)
T PF04583_consen 13 SQFLEDHALIMSIATDLGFDVLESALKSMLKKINTKLIPALKRMLLSTSRRVTVRL 68 (249)
T ss_pred HHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 57999998 78888779999999999999999999999999998887666666544
No 7
>PF05823 Gp-FAR-1: Nematode fatty acid retinoid binding protein (Gp-FAR-1); InterPro: IPR008632 Parasitic nematodes produce at least two structurally novel classes of small helix-rich retinol- and fatty-acid-binding proteins that have no counterparts in their plant or animal hosts and thus represent potential targets for new nematicides. Gp-FAR-1 is a member of the nematode-specific fatty-acid- and retinol-binding (FAR) family of proteins but localises to the surface of the organism, placing it in a strategic position for interaction with the host. Gp-FAR-1 functions as a broad-spectrum retinol- and fatty-acid-binding protein, and it is thought that it is involved in the evasion of primary host plant defence systems [].; GO: 0008289 lipid binding; PDB: 2W9Y_A.
Probab=67.93 E-value=9.9 Score=31.63 Aligned_cols=59 Identities=12% Similarity=0.201 Sum_probs=47.0
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHHHHHHHHHhhccCC
Q 044156 71 QLIRKRMKVRVPNLLSGLQGKSQIVQDELVRLGEQMVQSVEGTRSLSLELCREFEDKFLQLITTGE 136 (288)
Q Consensus 71 ~lL~~hI~~~LP~l~~~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~ll~~i~~F~~~~~~~l~G~~ 136 (288)
.-+..-+++..|.|-..+..+.....+.+.+|++. . ..|+-+++......+.+.+.|..
T Consensus 43 de~i~~LK~ksP~L~~k~~~l~~~~k~ki~~L~pe------a-k~Fv~~li~~~~~l~~~~~~G~~ 101 (154)
T PF05823_consen 43 DEMIAALKEKSPSLYEKAEKLRDKLKKKIDKLSPE------A-KAFVKELIAKARSLYAQYSAGEK 101 (154)
T ss_dssp TTHHHHHHHH-HHHHHHHHHHHHHHHHTTTT--HH------H-HHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHcCCHH------H-HHHHHHHHHHHHHHHHHhcCCCC
Confidence 34567788999999999999999999999999643 1 77999999999999999999885
No 8
>PF13080 DUF3926: Protein of unknown function (DUF3926)
Probab=67.60 E-value=9.2 Score=24.51 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=28.4
Q ss_pred Hhhccch-hHHHHHHHHHHHHHHHHHHhCCCCCC
Q 044156 76 RMKVRVP-NLLSGLQGKSQIVQDELVRLGEQMVQ 108 (288)
Q Consensus 76 hI~~~LP-~l~~~I~~~l~~~~~eL~~lg~~~~~ 108 (288)
||-.+|| -|+..-.++|...++||.++....+.
T Consensus 2 ~IleELP~PiqQsAkqmlnILQEELssy~~E~~~ 35 (44)
T PF13080_consen 2 HILEELPTPIQQSAKQMLNILQEELSSYPQEQPQ 35 (44)
T ss_pred chHhhcCchHHHHHHHHHHHHHHHHHhchhhccC
Confidence 5778899 68889999999999999999987654
No 9
>cd05133 RasGAP_IQGAP1 IQGAP1 is a homodimeric protein that is widely expressed among vertebrate cell types from early embryogenesis. Mammalian IQGAP1 protein is the best characterized member of the IQGAP family, and contains several protein-interacting domains. Human IQGAP1 is most similar to mouse Iqgap1 (94% identity) and has 62% identity to human IQGAP2. IQGAP1 binds and cross-links actin filaments in vitro and has been implicated in Ca2+/calmodulin signaling, E-cadherin-dependent cell adhesion, cell motility, and invasion. Yeast IQGAP homologues have a role in the recruitment of actin filaments, are components of the spindle pole body, and are required for actomyosin ring assembly and cytokinesis. Furthermore, IQGAP1 over-expression has also been detected in gastric and colorectal carcinomas and gastric cancer cell lines.
Probab=66.72 E-value=53 Score=31.24 Aligned_cols=216 Identities=12% Similarity=0.066 Sum_probs=107.2
Q ss_pred HHHHhccCC-CCCCC----C-CcchHHHHHHHHHHHHHHhhc-cc-----hhHHHHHHHHHHH-HHH---HHHHhCCCCC
Q 044156 44 ESESLKSIL-IGAPQ----S-QLGRIALADDLAQLIRKRMKV-RV-----PNLLSGLQGKSQI-VQD---ELVRLGEQMV 107 (288)
Q Consensus 44 E~~FF~~~p-~~~~~----~-~~G~~~L~~~L~~lL~~hI~~-~L-----P~l~~~I~~~l~~-~~~---eL~~lg~~~~ 107 (288)
..+++..++ |..+. . -.|-.||+.-|..++.+.|.. .| | .+|.+.+-. .+. +...++..++
T Consensus 29 ~~dllr~Ns~~~km~~~y~r~~~g~~yLk~vL~p~I~~iie~~dLdlE~dP---~~Iy~~~in~~E~~tG~~S~~~~~v~ 105 (360)
T cd05133 29 IQEIVTGNPTVIKMVVSFNRGARGQNALRQILAPVVKEIMDDKSLNIKTDP---VDIYKSWVNQMESQTGEASKLPYDVT 105 (360)
T ss_pred HHHHhccCcHHHHHHHHHhCCCccHHHHHHHHHHHHHHHhcCcccCccCCH---HHHHHHHHHHHHHhcCCcCCCCCCCC
Confidence 567888886 86542 3 389999998888888886642 23 4 122222211 111 1122332221
Q ss_pred -----CCHhHH------HHHHHHHHHHHHHHHHHhhccCCCCcchhHhhhhcchhhhhccCCCCCccChhhHHHHHHH--
Q 044156 108 -----QSVEGT------RSLSLELCREFEDKFLQLITTGEGSGWKIVASFEGNFPNRIKQLPLDRRFDINNVQRIVLE-- 174 (288)
Q Consensus 108 -----~~~~~~------~~~ll~~i~~F~~~~~~~l~G~~~ggari~~~f~~~F~~~i~~~~~~~~~~~~~I~~~i~~-- 174 (288)
.+++-+ ..-|..++.+|-+.+.+.++--+. .++++.+..+......+|-... +++-.++-.
T Consensus 106 ~e~A~~~peV~~~~~~~l~~Lr~i~~~fl~~I~~S~~~~P~---~iR~ick~i~~~~~~kFP~~~~---~~i~~~vG~fi 179 (360)
T cd05133 106 PEQALSHEEVRTRLDASIRNMRTVTDKFLSAIVSSVDKIPY---GMRFIAKVLKDSLHEKFPDAGE---DELLKIVGNLL 179 (360)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhCCH---HHHHHHHHHHHHHHHHCCCCch---hhHHHHHHHHH
Confidence 222211 233566677777777666654332 3666665555444454542211 222221110
Q ss_pred -hcCCCCCCCCCHHHHHHHHHHHHHhhhchHHHHHHhhhhhhhHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHH
Q 044156 175 -ADGYQPYLISPEKGLRSLIKGVLELAKEPSRLSVDEVIEPLKHVHRVLVGMVSAAANATPGLGRYPLFKREVVAIASAA 253 (288)
Q Consensus 175 -~~G~~~~~fvp~~afe~li~~~i~~l~~Ps~~~v~~v~~~l~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~i~~~i~~~ 253 (288)
.+=..|....|+. |-.+-...=......+.+.+-. |..+|..++.. ..|+. +..-...+..+
T Consensus 180 flRfi~PAIvsPe~-~~ii~~~~~~~~~~~~rrnL~~-------iaKvLQ~lan~-----~~f~~----~e~~m~pLN~f 242 (360)
T cd05133 180 YYRYMNPAIVAPDA-FDIIDLSAGGQLTTDQRRNLGS-------IAKMLQHAASN-----KMFLG----DNAHLSIINEY 242 (360)
T ss_pred HHHhccccccCchh-cCccccccCCCCCHHHHhhHHH-------HHHHHHHHHcC-----CCCCC----CccHHHHHHHH
Confidence 0113455455543 2111100001112223333433 44445544332 23331 12233467888
Q ss_pred HHHhHHHHHHHHHHHHHHhh--cCCCchhhhhhh
Q 044156 254 LDGFKNEARKMVVALVDMER--AFVPPQHFIRLV 285 (288)
Q Consensus 254 L~~~~~~a~~~v~~li~~E~--~~Intnh~~~~~ 285 (288)
+.++.....+++..+++.+- .+++.+.|..+.
T Consensus 243 I~~~~~~~~~fl~~~~~V~d~ee~~~~dey~dl~ 276 (360)
T cd05133 243 LSQSYQKFRRFFQSACEVPELQDKFNVDEYSDLV 276 (360)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHhcChhHHHHHH
Confidence 88899999999999998884 467777776654
No 10
>PF15011 CK2S: Casein Kinase 2 substrate
Probab=57.63 E-value=1.2e+02 Score=25.62 Aligned_cols=76 Identities=12% Similarity=0.099 Sum_probs=43.2
Q ss_pred HHHHHHHHhhhchHHHHHHhhhhhhhHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 044156 191 SLIKGVLELAKEPSRLSVDEVIEPLKHVHRVLVGMVSAAANATPGLGRYPLFKREVVAIASAALDGFKNEARKMVVAL 268 (288)
Q Consensus 191 ~li~~~i~~l~~Ps~~~v~~v~~~l~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~i~~~i~~~L~~~~~~a~~~v~~l 268 (288)
.=++++..+|.+--.+|...+...- .+.+-|.. +..+-.....+..||.|++.+.......++.-...-.+.+..+
T Consensus 8 ~~~~~~~~~W~~~~~~~~~~l~sl~-nL~eqL~a-l~~~~~~~~pL~~fpdl~~rL~~Kq~~ale~vl~~L~e~l~~l 83 (168)
T PF15011_consen 8 RKVEEQMEKWDSALSRCLPLLSSLA-NLAEQLQA-LQNVKNYGTPLRSFPDLQERLRRKQLEALETVLAKLRETLEEL 83 (168)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHhccccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588999999999888877744310 01111111 1111111113889999999887666655555544444444443
No 11
>COG2361 Uncharacterized conserved protein [Function unknown]
Probab=48.55 E-value=15 Score=29.14 Aligned_cols=44 Identities=9% Similarity=0.109 Sum_probs=32.7
Q ss_pred HhccCCCCCCC--------CCcchHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Q 044156 47 SLKSILIGAPQ--------SQLGRIALADDLAQLIRKRMKVRVPNLLSGLQGKSQIVQ 96 (288)
Q Consensus 47 FF~~~p~~~~~--------~~~G~~~L~~~L~~lL~~hI~~~LP~l~~~I~~~l~~~~ 96 (288)
++-.-||+.++ +++|+.. ++..+-++..||.|+.+|...+.+.+
T Consensus 63 ~~p~vPW~~magmRd~liH~Yfgvd~------~~VW~~v~~~lP~L~~~i~~il~~~~ 114 (117)
T COG2361 63 KYPEVPWKEMAGMRDKLIHGYFGVDL------KIVWDTVKTDLPALKKEILEILDELE 114 (117)
T ss_pred HCCCCCHHHHHHHHHHHHhhccCCCH------HHHHHHHHhhhHhhHHHHHHHHHHhh
Confidence 44444787653 5566654 56788999999999999999988765
No 12
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=48.08 E-value=2.3e+02 Score=26.17 Aligned_cols=130 Identities=12% Similarity=0.041 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHHHHHHHHHhhccCC-----------CCc----------chhHhhhhcch
Q 044156 92 SQIVQDELVRLGEQMVQSVEGTRSLSLELCREFEDKFLQLITTGE-----------GSG----------WKIVASFEGNF 150 (288)
Q Consensus 92 l~~~~~eL~~lg~~~~~~~~~~~~~ll~~i~~F~~~~~~~l~G~~-----------~gg----------ari~~~f~~~F 150 (288)
|...-+++..||-..|. -++...++.-+..|+...++++.+.. .-| ..|..... -
T Consensus 88 l~~Ll~e~~~L~~~~pE--i~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~~l~--~ 163 (335)
T PF08429_consen 88 LEALLEEIESLPFDCPE--IDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLRRRLE--Q 163 (335)
T ss_pred HHHHHHHHhcCCeeCch--HHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHHHHHH--H
Confidence 33344566677765543 34677888899999999999997611 011 11222221 1
Q ss_pred hhhhccC----CCCCccChhhHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhhchHHHHHHhhhhhhhHHHHHHHHHH
Q 044156 151 PNRIKQL----PLDRRFDINNVQRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLSVDEVIEPLKHVHRVLVGMV 226 (288)
Q Consensus 151 ~~~i~~~----~~~~~~~~~~I~~~i~~~~G~~~~~fvp~~afe~li~~~i~~l~~Ps~~~v~~v~~~l~~V~~~l~~~v 226 (288)
..|+... .....++.++|+..|....+..+|...+..++-.-+......|..-+..|+. ...+ -.+.|..++
T Consensus 164 ~~W~~~~~~~~~~~~~~tL~~l~~Ll~~g~~l~~~~~~~~~~~L~~~l~~~~~We~ka~~~L~-~~~~---~l~~Le~l~ 239 (335)
T PF08429_consen 164 LEWLEEAREILSDPDRLTLDELRELLDEGERLGIPSDEKLMAELQELLKQGEEWEEKAKELLS-RPRV---SLEQLEALL 239 (335)
T ss_pred HHHHHHHHHHhccccCCcHHHHHHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHh-cCCC---CHHHHHHHH
Confidence 2344433 1111366689999999776666555555556555567778889999999988 1221 445555555
Q ss_pred HHH
Q 044156 227 SAA 229 (288)
Q Consensus 227 ~~~ 229 (288)
...
T Consensus 240 ~~~ 242 (335)
T PF08429_consen 240 EEA 242 (335)
T ss_pred HHH
Confidence 544
No 13
>PRK09343 prefoldin subunit beta; Provisional
Probab=47.84 E-value=54 Score=25.97 Aligned_cols=55 Identities=15% Similarity=0.169 Sum_probs=45.7
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHHHHHHHHHhhccCCCCc
Q 044156 77 MKVRVPNLLSGLQGKSQIVQDELVRLGEQMVQSVEGTRSLSLELCREFEDKFLQLITTGEGSG 139 (288)
Q Consensus 77 I~~~LP~l~~~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~ll~~i~~F~~~~~~~l~G~~~gg 139 (288)
|+...+.++.+|.+++.-++.++..|- .+..++-.-+.+-++.+..++.+.+.||
T Consensus 65 v~qd~~e~~~~l~~r~E~ie~~ik~le--------kq~~~l~~~l~e~q~~l~~ll~~~~~~~ 119 (121)
T PRK09343 65 VKVDKTKVEKELKERKELLELRSRTLE--------KQEKKLREKLKELQAKINEMLSKYYPQG 119 (121)
T ss_pred hhccHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 456778899999999999999988874 3577899999999999999998876444
No 14
>KOG1895 consensus mRNA cleavage and polyadenylation factor II complex, subunit PTA1 [RNA processing and modification]
Probab=45.76 E-value=2.6e+02 Score=30.19 Aligned_cols=182 Identities=14% Similarity=0.132 Sum_probs=104.0
Q ss_pred CCcchHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhCCCCCCCHhHHHHHHHHH----HH----HHHHHHH
Q 044156 58 SQLGRIALADDLAQLIRKRMKVRVPNLLSGLQGKSQIVQDELVRLGEQMVQSVEGTRSLSLEL----CR----EFEDKFL 129 (288)
Q Consensus 58 ~~~G~~~L~~~L~~lL~~hI~~~LP~l~~~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~ll~~----i~----~F~~~~~ 129 (288)
-..|.+.|+.++-..|.+-+..+. .+...+.+.....-+.+..|=+--+..+ +.+++++ ++ .|...+.
T Consensus 703 ~~~~ae~lv~~~v~~ltde~~ps~-~li~tv~~l~~~r~~dvs~L~pi~~~le---rd~V~~~~p~~~~l~~~~~~~~~~ 778 (957)
T KOG1895|consen 703 CPAGAETLVPRLVVTLTDELPPST-DLIQTVKKLYETRLKDVSALLPILPGLE---RDEVLQLLPQLLKLPPKVVKLAFR 778 (957)
T ss_pred ccccCccchhhheeeccccCCCCh-HHHHHHHHHHHHhhhhHHHHHhhcCCCC---HHHHHHhhhHhhhcchHHHHHHHH
Confidence 457889999998888888877444 4556677777777777766655544333 3344433 33 6677777
Q ss_pred HhhccCCCCcchhHhhhh-cchhhhhccC-CCCCccChhhHHHHHHHhcCC-CC-CCCCCHHHHHHHHHHHHHhhhchHH
Q 044156 130 QLITTGEGSGWKIVASFE-GNFPNRIKQL-PLDRRFDINNVQRIVLEADGY-QP-YLISPEKGLRSLIKGVLELAKEPSR 205 (288)
Q Consensus 130 ~~l~G~~~ggari~~~f~-~~F~~~i~~~-~~~~~~~~~~I~~~i~~~~G~-~~-~~fvp~~afe~li~~~i~~l~~Ps~ 205 (288)
..+.|....| + ...+. ..--.++..+ |..+ ...+. +++.+.-+ ++ .+|.+ +.|+.++.+-++....|.+
T Consensus 779 ~~~~~~~~~~-~-l~~l~p~e~li~~H~i~~~~d-~~~~~---~~~a~n~cf~~~~~f~~-~~~~~~l~~l~~~~nlp~l 851 (957)
T KOG1895|consen 779 RLLTGSSLSG-R-LPVLDPSEVLIALHAIDPLKD-VRGKL---ATDALNLCFESRNLFTQ-QVLAQALNQLVKWENLPLL 851 (957)
T ss_pred HHhhcccccC-C-CCccCcHHHHHHHHhcccccC-chHHH---HHHHHHHHHhhhhcccH-HHHHHHHHHHHhccCCchh
Confidence 7777775222 1 11111 0122223333 2222 11122 23333322 22 44554 6677777665554444443
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 044156 206 LSVDEVIEPLKHVHRVLVGMVSAAANATPGLGRYPLFKREVVAIASAALDGFKNEARKMVVALVDME 272 (288)
Q Consensus 206 ~~v~~v~~~l~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~i~~~i~~~L~~~~~~a~~~v~~li~~E 272 (288)
.... |++ .+.+||+|...|.+++..++++..-.=-.+...+.+.-
T Consensus 852 -f~rt-------v~q--------------~~~~fp~l~~fV~e~Lsrlvekkiwk~~~~w~gf~kc~ 896 (957)
T KOG1895|consen 852 -FMRT-------VIQ--------------ALPKFPKLSLFVLEILSRLVEKKIWKFPKRWEGFPKCT 896 (957)
T ss_pred -hHHH-------HHh--------------hhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333 333 36679999999999999999888777666666665543
No 15
>cd05132 RasGAP_GAPA GAPA is an IQGAP-related protein and is predicted to bind to small GTPases, which are yet to be identified. IQGAP proteins are integral components of cytoskeletal regulation. Results from truncated GAPAs indicated that almost the entire region of GAPA homologous to IQGAP is required for cytokinesis in Dictyostelium. More members of the IQGAP family are emerging, and evidence suggests that there are both similarities and differences in their function.
Probab=36.80 E-value=3.5e+02 Score=25.18 Aligned_cols=212 Identities=15% Similarity=0.185 Sum_probs=102.3
Q ss_pred HHHHhccCC-CCCCC----CC-cchHHHHHHHHHHHHHHhhccchhHH-----HHHHHHHHHHHHHHHHhCCCCC----C
Q 044156 44 ESESLKSIL-IGAPQ----SQ-LGRIALADDLAQLIRKRMKVRVPNLL-----SGLQGKSQIVQDELVRLGEQMV----Q 108 (288)
Q Consensus 44 E~~FF~~~p-~~~~~----~~-~G~~~L~~~L~~lL~~hI~~~LP~l~-----~~I~~~l~~~~~eL~~lg~~~~----~ 108 (288)
..+||..++ |..+. .+ .|-.||...|..++.+.|.. |.+- .+|.+.+-. +.|+.. |.+.. .
T Consensus 28 ~~~l~R~Ns~~~k~l~~y~r~~~g~~yL~~~L~p~i~~ii~~--~~l~lE~DP~kiy~~~i~-~~e~~~-g~~s~~~~~~ 103 (331)
T cd05132 28 VGSLLRANTVVPRMITTYTRRGPGQSYLKSVLAPCLNDVVIH--KDLNLELNPLKVYENMIN-EQEIAT-GEKSNLPRGV 103 (331)
T ss_pred HHHHhcCCchHHHHHHHHHcCcccHHHHHHHHHHHHHHHHcC--CCCCeeCCHHHHHHHHHH-hHHhhc-CCCCcCCCCC
Confidence 567888875 86532 33 69999999999888886643 2211 122222221 223333 32211 0
Q ss_pred CHh-------H------HHHHHHHHHHHHHHHHHHhhccCCCCcchhHhhhhcchhhhhccCCCCCccChhhHHHHHHH-
Q 044156 109 SVE-------G------TRSLSLELCREFEDKFLQLITTGEGSGWKIVASFEGNFPNRIKQLPLDRRFDINNVQRIVLE- 174 (288)
Q Consensus 109 ~~~-------~------~~~~ll~~i~~F~~~~~~~l~G~~~ggari~~~f~~~F~~~i~~~~~~~~~~~~~I~~~i~~- 174 (288)
+++ - -..-|..++.+|-+.+.+.++--+ .-|+++++..+....+.+|... + +++..++-.
T Consensus 104 t~e~a~~~~ev~~~~~~~l~~L~~~~~~fl~~I~~s~~~~P---~~lR~i~~~l~~~~~~kfp~~~--~-~~~~~~vg~f 177 (331)
T cd05132 104 SPEKAQENPEVKKIIKPRVTQLIEICNRFLDTIISSLNRLP---YGIRWICKQIRSLTKRKFPSAT--D-AEICSLIGYF 177 (331)
T ss_pred CHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHCCCCC--H-HHHHHHHHHH
Confidence 111 0 123455666666666555555332 2466777655544444444221 1 222221110
Q ss_pred --hcCCCCCCCCCHHHHHHHHHHHHHhhhchHHHHHHhhhhhhhHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHH
Q 044156 175 --ADGYQPYLISPEKGLRSLIKGVLELAKEPSRLSVDEVIEPLKHVHRVLVGMVSAAANATPGLGRYPLFKREVVAIASA 252 (288)
Q Consensus 175 --~~G~~~~~fvp~~afe~li~~~i~~l~~Ps~~~v~~v~~~l~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~i~~~i~~ 252 (288)
.+=..|....|+ .|- ++. ..|+...-. --..+.++++++++ ...|. -+..-...+..
T Consensus 178 lflRfi~PAIvsP~-~fg-l~~------~~~~~~~rr--------nL~lIaKvLQ~lan----~~~f~-~ke~~m~pLn~ 236 (331)
T cd05132 178 FFLRFINPAIVTPQ-AYM-LVD------GEPSDTARK--------NLTLIAKMLQNLAN----KPSFG-DKEKWMVPLNP 236 (331)
T ss_pred HHHHHhhHHhcCch-hcC-CcC------CCCCHHHHH--------HHHHHHHHHHHHhC----CCCCC-CCchHHHHHHH
Confidence 000122222222 221 111 112111111 11233444444443 22333 23334456788
Q ss_pred HHHHhHHHHHHHHHHHHHHhh--cCCCchhhhhhhh
Q 044156 253 ALDGFKNEARKMVVALVDMER--AFVPPQHFIRLVQ 286 (288)
Q Consensus 253 ~L~~~~~~a~~~v~~li~~E~--~~Intnh~~~~~~ 286 (288)
++.++.....+++..+++..- .+.+.+.|..+.+
T Consensus 237 fi~~~~~~~~~fl~~l~~v~~~e~~~~~d~y~dl~~ 272 (331)
T cd05132 237 WIDENKEKVNNFLEELTEVGDPEEYLQVDKYMALSK 272 (331)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHhcCHhHHHHHHh
Confidence 888899999999999988773 4577777776654
No 16
>COG3186 Phenylalanine-4-hydroxylase [Amino acid transport and metabolism]
Probab=35.81 E-value=45 Score=30.14 Aligned_cols=46 Identities=24% Similarity=0.426 Sum_probs=36.8
Q ss_pred chhhhhccC--CCCCccChhhHHHHHHHhcCCC---CCCCCCHHHHHHHHH
Q 044156 149 NFPNRIKQL--PLDRRFDINNVQRIVLEADGYQ---PYLISPEKGLRSLIK 194 (288)
Q Consensus 149 ~F~~~i~~~--~~~~~~~~~~I~~~i~~~~G~~---~~~fvp~~afe~li~ 194 (288)
.|-..++.+ |.++..+-++|-+.++..+||+ .|++||...|-.++.
T Consensus 68 ~fLdgle~lgL~~~~ipd~~~in~~l~~~Tgw~v~~Vpglvp~~~ff~lLa 118 (291)
T COG3186 68 EFLDGLEALGLPLSRIPDFDEINRVLQRETGWQVVAVPGLVPFDVFFDLLA 118 (291)
T ss_pred HHHHHHHHcCCCcccCCCHHHHHHHHHHhcCcEEEecCccCChHHHHHHHh
Confidence 455566665 7788888899999999999975 788999998776654
No 17
>COG5104 PRP40 Splicing factor [RNA processing and modification]
Probab=35.46 E-value=3.6e+02 Score=26.56 Aligned_cols=20 Identities=10% Similarity=0.100 Sum_probs=12.7
Q ss_pred chhHhhhhcchhhhhccCCC
Q 044156 140 WKIVASFEGNFPNRIKQLPL 159 (288)
Q Consensus 140 ari~~~f~~~F~~~i~~~~~ 159 (288)
+++..+-++.|+.-++.++.
T Consensus 356 ~~~~r~~rd~FrtLLr~l~~ 375 (590)
T COG5104 356 AQNARHHRDEFRTLLRKLYS 375 (590)
T ss_pred HHHHHHhHHHHHHHHHHhhh
Confidence 45555556678777776643
No 18
>COG3716 ManZ Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IID [Carbohydrate transport and metabolism]
Probab=33.27 E-value=30 Score=31.42 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=17.9
Q ss_pred cccHHHHHHHHHHHhccCCC
Q 044156 34 EISLETAWTAESESLKSILI 53 (288)
Q Consensus 34 ~~s~~~a~~~E~~FF~~~p~ 53 (288)
+.+..+|+++=.+||++|||
T Consensus 52 k~~~~~AlkrHleFFNT~P~ 71 (269)
T COG3716 52 KEDLKEALKRHLEFFNTHPH 71 (269)
T ss_pred cHHHHHHHHHHHHHhcCCch
Confidence 45779999999999999997
No 19
>PF04286 DUF445: Protein of unknown function (DUF445); InterPro: IPR007383 This entry contains proteins of unknown function. They are predicted to be transmembrane proteins with 2 or 3 TM domains.
Probab=29.14 E-value=4.5e+02 Score=24.04 Aligned_cols=42 Identities=7% Similarity=0.113 Sum_probs=25.7
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCchh
Q 044156 239 YPLFKREVVAIASAALDGFKNEARKMVVALVDMERAFVPPQH 280 (288)
Q Consensus 239 fp~L~~~i~~~i~~~L~~~~~~a~~~v~~li~~E~~~Intnh 280 (288)
.|.+++.+...+.+.+....+..+..|..+|.....-.+..-
T Consensus 288 ~~~l~~~i~~~i~~~l~~~v~~~~~~i~~~V~~~l~~~~~~~ 329 (367)
T PF04286_consen 288 DPELREKINRFIENLLERIVESNHIDIGEIVEEKLNSLDDEE 329 (367)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 377777777766666666666666666666655544444433
No 20
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=29.11 E-value=75 Score=21.88 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHHHHH
Q 044156 83 NLLSGLQGKSQIVQDELVRLGEQMVQSVEGTRSLSLELCREFED 126 (288)
Q Consensus 83 ~l~~~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~ll~~i~~F~~ 126 (288)
.+.++.++.+.-...+|..+|-|+ .++.||+....+|.+
T Consensus 18 kf~~~w~~lf~~~s~~LK~~GIp~-----r~RryiL~~~ek~r~ 56 (57)
T PF09597_consen 18 KFESDWEKLFTTSSKQLKELGIPV-----RQRRYILRWREKYRQ 56 (57)
T ss_pred HHHHHHHHHHhcCHHHHHHCCCCH-----HHHHHHHHHHHHHhC
Confidence 445567888888899999999853 248999999998864
No 21
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=27.37 E-value=3.8e+02 Score=25.87 Aligned_cols=190 Identities=13% Similarity=0.119 Sum_probs=93.2
Q ss_pred HHHhccCC-CCC-C---CCCcchHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhCCCCCCCHhHHHHHHHH
Q 044156 45 SESLKSIL-IGA-P---QSQLGRIALADDLAQLIRKRMKVRVPNLLSGLQGKSQIVQDELVRLGEQMVQSVEGTRSLSLE 119 (288)
Q Consensus 45 ~~FF~~~p-~~~-~---~~~~G~~~L~~~L~~lL~~hI~~~LP~l~~~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~ll~ 119 (288)
...|..+. +.. + ..+.|.+||.+.|..++.+.+..... -||+-..-.-.++ .......+.-..-|..
T Consensus 132 ntLFRgNSl~TK~l~~y~r~~G~~YL~~~L~p~I~~I~~~~~~---~EiDP~ki~~~~~-----~e~~~~l~~n~~~L~~ 203 (395)
T cd05137 132 NLLFRGNSLLTKSLELYMRRLGKEYLEKTLGAKIREINEEDPS---CEVDPSRISEGDE-----IEKRQIIEHNWERLIS 203 (395)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---eeeChhhcCCccc-----chHHHHHHHHHHHHHH
Confidence 34566553 532 2 26789999999999988887754332 1111100000000 0000112222445677
Q ss_pred HHHHHHHHHHHhhccCCCCcchhHhhhhcchhhhhccCCCCCccChhhHHHHHHHhcC-------CCCCCCCCHHHHHHH
Q 044156 120 LCREFEDKFLQLITTGEGSGWKIVASFEGNFPNRIKQLPLDRRFDINNVQRIVLEADG-------YQPYLISPEKGLRSL 192 (288)
Q Consensus 120 ~i~~F~~~~~~~l~G~~~ggari~~~f~~~F~~~i~~~~~~~~~~~~~I~~~i~~~~G-------~~~~~fvp~~afe~l 192 (288)
++.+|-+.+.+.++--+ .-++++++......-...|... ++ ...++-| .-|....|+ .| .+
T Consensus 204 ~~~~~~~~I~~S~~~~P---~~lR~i~~~lr~~v~~kfpd~~----~~---~~~~~Vg~FiFLRFicPAIvsP~-~f-~L 271 (395)
T cd05137 204 LTEEIWKRIANTSNDLP---QEIRHILKYIRAKLEDRYGDFL----RT---VVYNSISGFLFLRFFCPAILNPK-LF-GL 271 (395)
T ss_pred HHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHCCCch----hh---HHHHHHHHHHHHHHhccccCChh-hc-CC
Confidence 77777776665555332 2466666533322222233211 11 1112222 234434443 33 22
Q ss_pred HHHHHHhhhchHHHHHHhhhhhhhHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 044156 193 IKGVLELAKEPSRLSVDEVIEPLKHVHRVLVGMVSAAANATPGLGRYPLFKREVVAIASAALDGFKNEARKMVVALVDME 272 (288)
Q Consensus 193 i~~~i~~l~~Ps~~~v~~v~~~l~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~i~~~i~~~L~~~~~~a~~~v~~li~~E 272 (288)
+. ....+.+.+.+.. |...|+. +++ ...|+ -++.-...+.+++.++...-.++++.+.+..
T Consensus 272 ~~---~~p~~~~rRtLtL-------IAKvLQn----LAN----~~~f~-~KE~~M~~lN~Fi~~~~~~~~~FL~~is~v~ 332 (395)
T cd05137 272 LR---DHPQPRAQRTLTL-------IAKVLQN----LAN----LTNFG-KKEPWMEPMNPFIEKHRQELKDYIDKICSIK 332 (395)
T ss_pred Cc---CCCCHHHHHHHHH-------HHHHHHH----Hhc----cCCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 22 1222224445544 4444444 433 33444 2555666688999999999999999987766
Q ss_pred h
Q 044156 273 R 273 (288)
Q Consensus 273 ~ 273 (288)
.
T Consensus 333 ~ 333 (395)
T cd05137 333 L 333 (395)
T ss_pred c
Confidence 3
No 22
>cd05130 RasGAP_Neurofibromin Neurofibromin is the product of the neurofibromatosis type 1 gene (NF1) and shares a region of similarity with catalytic domain of the mammalian p120RasGAP protein and an extended similarity with the Saccharomyces cerevisiae RasGAP proteins Ira1 and Ira2. Neurofibromin has been shown to function as a GAP (GTPase-activating protein) which inhibits low molecular weight G proteins such as Ras by stimulating their intrinsic GTPase activity. NF1 is a common genetic disorder characterized by various symptoms ranging from predisposition for the development of tumors to learning disability or mental retardation. Loss of neurofibromin activity can be correlated to the increase in Ras-GTP concentration in neurofibromas of NF1 of patients, supporting the notion that unregulated Ras signaling may contribute to their development.
Probab=27.00 E-value=4e+02 Score=24.96 Aligned_cols=190 Identities=13% Similarity=0.123 Sum_probs=90.0
Q ss_pred HHHHhccCC-CCCC-C---CCcchHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHHHhCCCCCCCHhHHHHHH
Q 044156 44 ESESLKSIL-IGAP-Q---SQLGRIALADDLAQLIRKRMKVR-VPNLLSGLQGKSQIVQDELVRLGEQMVQSVEGTRSLS 117 (288)
Q Consensus 44 E~~FF~~~p-~~~~-~---~~~G~~~L~~~L~~lL~~hI~~~-LP~l~~~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~l 117 (288)
+..+|..++ |..+ . ...|.+||...|..++.+.|... +-...-+|+-. +++ +..+.+.-..-|
T Consensus 69 ~~~lfRgNs~~tKl~~~y~k~~G~~yL~~~L~pvI~~ii~~~~~~~~~~EvDP~---------k~~--~~e~l~~n~~~L 137 (329)
T cd05130 69 MQTLFRGNSLASKIMTFCFKVYGATYLQKLLEPLLREVITSPEWQHFEFEVDPT---------RLE--PTENLEENQRNL 137 (329)
T ss_pred HhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccCcChh---------hcC--ChhhHHHHHHHH
Confidence 456787775 6543 1 45799999999998888877532 10000011111 011 111122234567
Q ss_pred HHHHHHHHHHHHHhhccCCCCcchhHhhhhcchhhhhccCCCCCccChhhHHHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Q 044156 118 LELCREFEDKFLQLITTGEGSGWKIVASFEGNFPNRIKQLPLDRRFDINNVQRIVLEADGYQPYLISPEKGLRSLIKGVL 197 (288)
Q Consensus 118 l~~i~~F~~~~~~~l~G~~~ggari~~~f~~~F~~~i~~~~~~~~~~~~~I~~~i~~~~G~~~~~fvp~~afe~li~~~i 197 (288)
..++.+|-+.+.+.++--+ ..++++++..+....+.+|-.......=|...|- .|=..|....|+ .| .++..
T Consensus 138 ~~~~~~fl~~I~~S~~~~P---~~lR~i~~~l~~~v~~kFP~~~~~~~~~Vg~fiF-LRfi~PAIvsP~-~f-~l~~~-- 209 (329)
T cd05130 138 LQLTEKFFHAIINSSSEFP---PQLRSVCHCLYQVVSQRFPNKAQNSIGAVGSAMF-LRFINPAIVSPY-EA-GILDK-- 209 (329)
T ss_pred HHHHHHHHHHHHHhHHhCC---HHHHHHHHHHHHHHHHHCCCcccchHHHHHHHHH-HHHhhhhhCCcc-cc-CCCCC--
Confidence 7777788777766665332 2366666544433333344321000000000000 000123322232 22 11211
Q ss_pred HhhhchHHHHHHhhhhhhhHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 044156 198 ELAKEPSRLSVDEVIEPLKHVHRVLVGMVSAAANATPGLGRYPLFKREVVAIASAALDGFKNEARKMVVALVD 270 (288)
Q Consensus 198 ~~l~~Ps~~~v~~v~~~l~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~i~~~i~~~L~~~~~~a~~~v~~li~ 270 (288)
.....+.+.+.. |...|.+ +++ ...|. ++.-...+.+++.++.+...+++.++..
T Consensus 210 -~p~~~~rR~L~l-------IAKvLQn----lAN----~~~F~--KE~~M~~lN~fi~~~~~~~~~Fl~~i~~ 264 (329)
T cd05130 210 -KPPPRIERGLKL-------MSKILQS----IAN----HVLFT--KEEHMRPFNDFVKSNFDAARRFFLDIAS 264 (329)
T ss_pred -CCCHHHHhHHHH-------HHHHHHH----Hhc----cCccC--CcHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 111123344444 4444444 433 22343 3445556788888888888888888764
No 23
>PF02477 Nairo_nucleo: Nucleocapsid N protein; InterPro: IPR003486 The nucleoprotein of the ssRNA negative-strand Nairovirus is an internal part of the virus particle.; GO: 0019013 viral nucleocapsid; PDB: 3U3I_A.
Probab=25.22 E-value=2.3e+02 Score=26.99 Aligned_cols=95 Identities=11% Similarity=0.084 Sum_probs=48.8
Q ss_pred cCCCCCC--CCCcchHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHH-HHH
Q 044156 50 SILIGAP--QSQLGRIALADDLAQLIRKRMKVRVPNLLSGLQGKSQIVQDELVRLGEQMVQSVEGTRSLSLELCRE-FED 126 (288)
Q Consensus 50 ~~p~~~~--~~~~G~~~L~~~L~~lL~~hI~~~LP~l~~~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~ll~~i~~-F~~ 126 (288)
++||.++ +.+-|||-++.-|-++ +.-.=|++-++|.+.|.+..+=+..=.+... .++...|++-+++ +.+
T Consensus 215 nppwgdink~gksgi~l~at~m~k~----~eldg~~~~ed~k~~l~~l~~w~~~~kd~~e---~~k~~elv~~~~k~l~~ 287 (442)
T PF02477_consen 215 NPPWGDINKAGKSGIPLAATGMAKL----AELDGKKVLEDIKKTLLDLKKWVEDNKDEVE---DGKGDELVKTLTKHLAK 287 (442)
T ss_dssp S-SSSSTT-BSSSSBHHHHHHHHHT----TT----THHHHHHHHHHHHHHHHHHTGGGS----HHHHHHHHHHHHHHHHH
T ss_pred CCCccccccccccCchHHHHHHHHH----HHhcCcchHHHHHHHHHHHHHHHHhchHhhh---cccHHHHHHHHHHHHHH
Confidence 4579987 4899999988876654 3444455556666666666665555444432 2334555554443 333
Q ss_pred HHHHhhccCC----CCcchhHhhhhcchhhh
Q 044156 127 KFLQLITTGE----GSGWKIVASFEGNFPNR 153 (288)
Q Consensus 127 ~~~~~l~G~~----~ggari~~~f~~~F~~~ 153 (288)
.. .+.|.. .-|+.|..+|..-|=.|
T Consensus 288 a~--~L~k~s~a~raQGaqID~~FSsYyW~~ 316 (442)
T PF02477_consen 288 AT--ELSKKSTAFRAQGAQIDTVFSSYYWLW 316 (442)
T ss_dssp HH--HHHHHHHHHHHHHT---HHHHHHHHHH
T ss_pred HH--HHhcCchHHHhccCccccchHHHHHHH
Confidence 22 223332 23667887776544433
No 24
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=24.81 E-value=2.3e+02 Score=20.05 Aligned_cols=45 Identities=7% Similarity=0.086 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHHHHHHHHH
Q 044156 86 SGLQGKSQIVQDELVRLGEQMVQSVEGTRSLSLELCREFEDKFLQ 130 (288)
Q Consensus 86 ~~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~ll~~i~~F~~~~~~ 130 (288)
.+|+..|.++++-|..|.-...+-|...+..+...+..|...+..
T Consensus 28 ~~~e~~l~ea~~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~ 72 (79)
T PF05008_consen 28 REIERDLDEAEELLKQMELEVRSLPPSERNQYKSKLRSYRSELKK 72 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 444445544444444444332222323366777777777776654
No 25
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=24.39 E-value=1.6e+02 Score=25.69 Aligned_cols=58 Identities=10% Similarity=0.165 Sum_probs=23.6
Q ss_pred cHHHHHHHHHHHhccCC--CCCC--C-CCcchHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Q 044156 36 SLETAWTAESESLKSIL--IGAP--Q-SQLGRIALADDLAQLIRKRMKVRVPNLLSGLQGKSQIVQD 97 (288)
Q Consensus 36 s~~~a~~~E~~FF~~~p--~~~~--~-~~~G~~~L~~~L~~lL~~hI~~~LP~l~~~I~~~l~~~~~ 97 (288)
.+.+-+.+-=+||..|| ...+ + ..=|+-.|.++=-..|.+.++ .|+.+++.++...++
T Consensus 10 ~V~~yL~~~PdFf~~~~~ll~~l~~ph~~~~avSL~erQ~~~LR~~~~----~L~~~l~~Li~~Ar~ 72 (225)
T PF04340_consen 10 DVAAYLRQHPDFFERHPELLAELRLPHPSGGAVSLVERQLERLRERNR----QLEEQLEELIENARE 72 (225)
T ss_dssp -------------------------------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcHHHHhCHHHHHHcCCCCCCCCcccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 45566677778999998 4544 2 334677777777777776666 688888887776665
No 26
>KOG4484 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.61 E-value=2.3e+02 Score=24.06 Aligned_cols=43 Identities=19% Similarity=0.338 Sum_probs=32.5
Q ss_pred CCcchHHHHHHHHHHHHHHhh-ccch-hHHHHHHHHHHHHHHHHHH
Q 044156 58 SQLGRIALADDLAQLIRKRMK-VRVP-NLLSGLQGKSQIVQDELVR 101 (288)
Q Consensus 58 ~~~G~~~L~~~L~~lL~~hI~-~~LP-~l~~~I~~~l~~~~~eL~~ 101 (288)
..-|+..|.+++..+ -..++ +-|| .++.+....|.+.+++|+.
T Consensus 22 k~pgts~iK~qiRd~-eRlLkk~~LP~~Vr~e~er~L~~Lk~ql~~ 66 (199)
T KOG4484|consen 22 KKPGTSSIKNQIRDL-ERLLKKKDLPPEVREELERKLQDLKKQLDN 66 (199)
T ss_pred cCCchHHHHHHHHHH-HHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 457888888776654 33344 7777 8999999999999998765
No 27
>PF09545 RE_AccI: AccI restriction endonuclease; InterPro: IPR019054 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the restriction endonuclease AccI, which recognises and cleaves the double-stranded sequence GT^MKAC.
Probab=22.66 E-value=3.1e+02 Score=25.50 Aligned_cols=87 Identities=13% Similarity=0.107 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHhhccCC---CCcchhHhhhhcchhhhhccC---CCCCccChhhHHHHHHHhcCCCCCCCCCHHHHH
Q 044156 117 SLELCREFEDKFLQLITTGE---GSGWKIVASFEGNFPNRIKQL---PLDRRFDINNVQRIVLEADGYQPYLISPEKGLR 190 (288)
Q Consensus 117 ll~~i~~F~~~~~~~l~G~~---~ggari~~~f~~~F~~~i~~~---~~~~~~~~~~I~~~i~~~~G~~~~~fvp~~afe 190 (288)
+++-|+++.+.|-+.--|.+ ..|.+-+..|-++|.+.+..+ |--=++...+.. ++-|...+ ++|+....
T Consensus 52 V~~AINeT~~~fvAV~YG~S~~~~agd~gFe~fyq~~Q~elnTIgKRPDlLiF~~~~~~----~sL~~di~-~~~~~~l~ 126 (366)
T PF09545_consen 52 VLRAINETSSEFVAVRYGPSDAIPAGDEGFELFYQRLQRELNTIGKRPDLLIFKKSDFD----DSLMFDIS-QIPHDKLD 126 (366)
T ss_pred HHHHHhhccccEEEEEecCCCCCCcCchhHHHHHHHHHHHhhccCCCCcEEEEeccccc----hhhccccc-cCchHHHH
Confidence 45566666655554445553 223466666666777766554 210011111111 12244555 67777777
Q ss_pred HHHHHHHHhhhchHHHHH
Q 044156 191 SLIKGVLELAKEPSRLSV 208 (288)
Q Consensus 191 ~li~~~i~~l~~Ps~~~v 208 (288)
.+|++.|.-++--+..|+
T Consensus 127 ~~V~kAI~gvEVrsS~fl 144 (366)
T PF09545_consen 127 KYVKKAIAGVEVRSSSFL 144 (366)
T ss_pred HHHHHhheeEEeehhHHH
Confidence 777777766665544443
No 28
>PF10835 DUF2573: Protein of unknown function (DUF2573); InterPro: IPR020393 This entry contains proteins with no known function.
Probab=22.63 E-value=68 Score=23.58 Aligned_cols=30 Identities=10% Similarity=0.199 Sum_probs=21.8
Q ss_pred chHHHHHHH-HHHHHHHhhccchhHHHHHHH
Q 044156 61 GRIALADDL-AQLIRKRMKVRVPNLLSGLQG 90 (288)
Q Consensus 61 G~~~L~~~L-~~lL~~hI~~~LP~l~~~I~~ 90 (288)
+.+-+.++. ..+|..||.+++|.|...=+.
T Consensus 23 ~~~e~~EkVk~W~lYshiaKsMPpL~kHWN~ 53 (82)
T PF10835_consen 23 TSPEMKEKVKQWALYSHIAKSMPPLAKHWNG 53 (82)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCcHHHHhhcc
Confidence 455666554 468999999999998766554
No 29
>cd00619 Terminator_NusB Transcription termination factor NusB (N protein-Utilization Substance B). NusB plays a key role in the regulation of ribosomal RNA biosynthesis in eubacteria by modulating the efficiency of transcriptional antitermination. NusB along with other Nus factors (NusA, NusE/S10 and NusG) forms the core complex with the boxA element of the nut site of the rRNA operons. These interactions help RNA polymerase to counteract polarity during transcription of rRNA operons and allow stable antitermination. The transcription antitermination system can be appropriated by some bacteriophages such as lambda, which use the system to switch between the lysogenic and lytic modes of phage propagation.
Probab=21.85 E-value=3.2e+02 Score=21.28 Aligned_cols=64 Identities=19% Similarity=0.230 Sum_probs=46.2
Q ss_pred cchHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHHHHH
Q 044156 60 LGRIALADDLAQLIRKRMKVR-VPNLLSGLQGKSQIVQDELVRLGEQMVQSVEGTRSLSLELCREFED 126 (288)
Q Consensus 60 ~G~~~L~~~L~~lL~~hI~~~-LP~l~~~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~ll~~i~~F~~ 126 (288)
.|+-.=...|..++.+++++. +|.+...+...|.-.--|+.-+++-|+... ....++++.+|+.
T Consensus 48 ~gvlr~~~~ld~ii~~~l~~~~~~~l~~~~~~iLria~~el~~~~~~p~~~v---inEaV~lak~~~~ 112 (130)
T cd00619 48 RGVLENIEEIDELIEKHLRNWSLDRLAIVERAILRLAVYELLFLPDVPHPVV---INEAIELAKRFGG 112 (130)
T ss_pred HHHHHhHHHHHHHHHHHccCCCHHHhhHHHHHHHHHHHHHHHhCCCCCCcch---HHHHHHHHHHHCC
Confidence 566666778999999999876 888888888889988899887773222212 4455666666654
No 30
>COG3143 CheZ Chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=21.85 E-value=5.3e+02 Score=22.34 Aligned_cols=133 Identities=11% Similarity=0.219 Sum_probs=70.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCC--------CCHhHHHHHHHHHHHHHHHHHHHhhccCC------CCcc-hhHhhh
Q 044156 82 PNLLSGLQGKSQIVQDELVRLGEQMV--------QSVEGTRSLSLELCREFEDKFLQLITTGE------GSGW-KIVASF 146 (288)
Q Consensus 82 P~l~~~I~~~l~~~~~eL~~lg~~~~--------~~~~~~~~~ll~~i~~F~~~~~~~l~G~~------~gga-ri~~~f 146 (288)
|.+-.+|..+-....+.|..||-... .+.-+...|+.++-.+-....-++++... .+.+ -|...+
T Consensus 18 ~dm~qrIG~LTRmL~eslrelglD~~~~~aa~aIpDArdRL~YVv~mTeqAA~r~lnaVea~~P~qd~L~~~a~~l~~rW 97 (217)
T COG3143 18 PDMIQRIGSLTRMLRESLRELGLDQAIAEAAEAIPDARDRLNYVVQMTEQAAERALNAVEASQPHQDQLEKSAKALTQRW 97 (217)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCcchhhHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence 66777777777777777777774321 12335678888887777766666776553 1112 233333
Q ss_pred hcchhhhhccCCCCCccChhhHHHHHHHhcC-----CCCCCCCCHHHHHHHHHHHHHhhhchHHHHHHhhhhhhhHHHHH
Q 044156 147 EGNFPNRIKQLPLDRRFDINNVQRIVLEADG-----YQPYLISPEKGLRSLIKGVLELAKEPSRLSVDEVIEPLKHVHRV 221 (288)
Q Consensus 147 ~~~F~~~i~~~~~~~~~~~~~I~~~i~~~~G-----~~~~~fvp~~afe~li~~~i~~l~~Ps~~~v~~v~~~l~~V~~~ 221 (288)
++.|..- .+..++|......+| ..-..|.+-+-.+.|.-+-..-|.|-..+-+-.|..+ |.+.
T Consensus 98 q~wm~~~---------i~~~~~r~Lv~~t~~fL~~vp~~t~~tn~qL~eIlmAQDfQDLTGQVIKrv~dlVqe---iE~~ 165 (217)
T COG3143 98 QDWMARP---------IDLDDARELVTDTRQFLADVPQHTSFTNAQLLEILMAQDFQDLTGQVIKRVMDVVQE---IESQ 165 (217)
T ss_pred HHHHcCc---------cchHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 3333222 223455555554444 1223456666666666665555555443333332222 5555
Q ss_pred HHHHH
Q 044156 222 LVGMV 226 (288)
Q Consensus 222 l~~~v 226 (288)
|..++
T Consensus 166 Lv~il 170 (217)
T COG3143 166 LVMIL 170 (217)
T ss_pred HHHHH
Confidence 55554
No 31
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=21.68 E-value=60 Score=29.84 Aligned_cols=19 Identities=11% Similarity=-0.073 Sum_probs=16.6
Q ss_pred ccHHHHHHHHHHHhccCCC
Q 044156 35 ISLETAWTAESESLKSILI 53 (288)
Q Consensus 35 ~s~~~a~~~E~~FF~~~p~ 53 (288)
....+|.++..+||++|||
T Consensus 59 e~~~~Al~Rhl~fFNT~p~ 77 (282)
T PRK11103 59 EARKQAIKRHLEFFNTHPY 77 (282)
T ss_pred HHHHHHHHHHHHHHCCCch
Confidence 4568999999999999994
No 32
>PF01706 FliG_C: FliG C-terminal domain; InterPro: IPR023087 The flagellar motor switch in Escherichia coli and Salmonella typhimurium regulates the direction of flagellar rotation and hence controls swimming behaviour []. The switch is a complex apparatus that responds to signals transduced by the chemotaxis sensory signalling system during chemotactic behaviour []. CheY, the chemotaxis response regulator, is believed to act directly on the switch to induce tumbles in the swimming pattern, but no physical interactions of CheY and switch proteins have yet been demonstrated. The switch complex comprises at least three proteins - FliG, FliM and FliN. It has been shown that FliG interacts with FliM, FliM interacts with itself, and FliM interacts with FliN []. Several residues within the middle third of FliG appear to be strongly involved in the FliG-FliM interaction, with residues near the N- or C-termini being less important []. Such clustering suggests that FliG-FliM interaction plays a central role in switching. Analysis of the FliG, FliM and FliN sequences shows that none are especially hydrophobic or appear to be integral membrane proteins []. This result is consistent with other evidence suggesting that the proteins may be peripheral to the membrane, possibly mounted on the basal body M ring [, ]. FliG is present in about 25 copies per flagellum. This entry represents the C-terminal domain of FliG, the structure of which is known. This domain functions specifically in motor rotation [].; PDB: 3USY_B 3USW_A 3HJL_A 3AJC_A 1LKV_X 1QC7_B.
Probab=21.42 E-value=2.3e+02 Score=21.71 Aligned_cols=62 Identities=18% Similarity=0.344 Sum_probs=36.7
Q ss_pred CCcchHHHHHHH---HHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHHHH
Q 044156 58 SQLGRIALADDL---AQLIRKRMKVRVPNLLSGLQGKSQIVQDELVRLGEQMVQSVEGTRSLSLELCREFE 125 (288)
Q Consensus 58 ~~~G~~~L~~~L---~~lL~~hI~~~LP~l~~~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~ll~~i~~F~ 125 (288)
..++...|+.-| +.-+.++|-.++|. ..-...++++..+|+.+..+.++-+..++.++.+..
T Consensus 38 ~~v~~~~la~ALkga~~e~~~~il~nms~------r~a~~l~~e~~~~g~v~~~di~~Aq~~iv~~~r~l~ 102 (110)
T PF01706_consen 38 REVDPDDLALALKGASEELREKILSNMSK------RAAEMLREEMEALGPVRLSDIEEAQREIVEIVRRLE 102 (110)
T ss_dssp TTS-HHHHHHHHCTS-HHHHHHHHTTS-H------HHHHHHHHHHHHH-S--HHHHHHHHHHHHHHHHHHH
T ss_pred HHCCHhHHHHHHccCCHHHHHHHHHHcCH------HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 566666666655 45677777777776 334467889999998766555555555666655543
No 33
>cd00361 arom_aa_hydroxylase Biopterin-dependent aromatic amino acid hydroxylase; a family of non-heme, iron(II)-dependent enzymes that includes prokaryotic and eukaryotic phenylalanine-4-hydroxylase (PheOH), eukaryotic tyrosine hydroxylase (TyrOH) and eukaryotic tryptophan hydroxylase (TrpOH). PheOH converts L-phenylalanine to L-tyrosine, an important step in phenylalanine catabolism and neurotransmitter biosynthesis, and is linked to a severe variant of phenylketonuria in humans. TyrOH and TrpOH are involved in the biosynthesis of catecholamine and serotonin, respectively. The eukaryotic enzymes are all homotetramers.
Probab=21.34 E-value=1.3e+02 Score=26.70 Aligned_cols=46 Identities=15% Similarity=0.296 Sum_probs=34.6
Q ss_pred chhhhhccC--CCCCccChhhHHHHHHHhcCCC---CCCCCCHHHHHHHHH
Q 044156 149 NFPNRIKQL--PLDRRFDINNVQRIVLEADGYQ---PYLISPEKGLRSLIK 194 (288)
Q Consensus 149 ~F~~~i~~~--~~~~~~~~~~I~~~i~~~~G~~---~~~fvp~~afe~li~ 194 (288)
.|-..+..+ +.+++.+.++|-+.++..+|++ .++++|...|-.++-
T Consensus 31 ~yl~gl~~l~l~~d~IPql~~in~~L~~~TGw~~~pV~gli~~~~Ff~~LA 81 (221)
T cd00361 31 EYLEGLELLGLPEDRIPQLEDVSEFLKALTGWTLVPVAGLISPRDFFALLA 81 (221)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHhhcCCEEEecCCcCCHHHHHHHHh
Confidence 344444444 6778888899999999999975 778999988766653
No 34
>PLN03132 NADH dehydrogenase (ubiquinone) flavoprotein 1; Provisional
Probab=21.16 E-value=2.2e+02 Score=28.08 Aligned_cols=91 Identities=15% Similarity=0.083 Sum_probs=56.7
Q ss_pred cccHHHHHHHHHHHhccCC--CCCCCCCcchHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHHHhCCCCCCCH
Q 044156 34 EISLETAWTAESESLKSIL--IGAPQSQLGRIALADDLAQLIRKRMKVR-VPNLLSGLQGKSQIVQDELVRLGEQMVQSV 110 (288)
Q Consensus 34 ~~s~~~a~~~E~~FF~~~p--~~~~~~~~G~~~L~~~L~~lL~~hI~~~-LP~l~~~I~~~l~~~~~eL~~lg~~~~~~~ 110 (288)
..++-++...=.+||+... +.. .=|.|++.|.+-|.++..-.-... |..| .++...+. ...+-.||+..
T Consensus 358 ~~~~v~~~~~~~~F~a~ESCGqCt-PCReGt~~l~~iL~ri~~G~g~~~Dld~L-~~la~~m~--~~s~C~LG~~A---- 429 (461)
T PLN03132 358 STDVVDAIARLSYFYKHESCGQCT-PCREGTGWLWDIMERMKVGNAKLEEIDML-QEVTKQIE--GHTICALGDAA---- 429 (461)
T ss_pred CCCHHHHHHHHHHHHhccCCCCCC-ChhhHHHHHHHHHHHHHcCCCCHHHHHHH-HHHHHHhh--cCCcCcCcHhh----
Confidence 4467888778888998664 333 348999999998887765533311 1111 11111111 23344555432
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccC
Q 044156 111 EGTRSLSLELCREFEDKFLQLITTG 135 (288)
Q Consensus 111 ~~~~~~ll~~i~~F~~~~~~~l~G~ 135 (288)
...++..+..|-+.|.+.+.+.
T Consensus 430 ---~~pv~s~Lk~F~dEfe~hi~~~ 451 (461)
T PLN03132 430 ---AWPVQGLIRHFRPELERRIKER 451 (461)
T ss_pred ---HHHHHHHHHHHHHHHHHHHhcc
Confidence 5578999999999999998865
No 35
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.85 E-value=5.3e+02 Score=22.85 Aligned_cols=21 Identities=10% Similarity=0.010 Sum_probs=15.2
Q ss_pred hhHHHHHHHh-cCCCCCCCCCH
Q 044156 166 NNVQRIVLEA-DGYQPYLISPE 186 (288)
Q Consensus 166 ~~I~~~i~~~-~G~~~~~fvp~ 186 (288)
+||...+.+. +|..+|.++++
T Consensus 238 ~Di~~fv~~~gtG~~~P~~~~f 259 (261)
T cd07648 238 KLLRQFVESKGTGTEKPELIEF 259 (261)
T ss_pred HHHHHHHHcCCCCCCCCCCCCC
Confidence 6788777765 57778877765
No 36
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=20.83 E-value=2.5e+02 Score=20.74 Aligned_cols=19 Identities=11% Similarity=0.214 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHhCCC
Q 044156 87 GLQGKSQIVQDELVRLGEQ 105 (288)
Q Consensus 87 ~I~~~l~~~~~eL~~lg~~ 105 (288)
+|+..+...++.+..||.+
T Consensus 7 ~in~~v~~l~k~~~~lGt~ 25 (102)
T PF14523_consen 7 KINQNVSQLEKLVNQLGTP 25 (102)
T ss_dssp HHHHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHHHHHhCCc
Confidence 3444444455555555543
No 37
>PRK11913 phhA phenylalanine 4-monooxygenase; Reviewed
Probab=20.80 E-value=1.3e+02 Score=27.61 Aligned_cols=45 Identities=24% Similarity=0.407 Sum_probs=34.0
Q ss_pred chhhhhccC--CCCCccChhhHHHHHHHhcCCC---CCCCCCHHHHHHHH
Q 044156 149 NFPNRIKQL--PLDRRFDINNVQRIVLEADGYQ---PYLISPEKGLRSLI 193 (288)
Q Consensus 149 ~F~~~i~~~--~~~~~~~~~~I~~~i~~~~G~~---~~~fvp~~afe~li 193 (288)
.|-..+..+ +.+.+.+.++|-+.++..+||+ .++++|...|-.++
T Consensus 53 ~yl~gl~~L~l~~d~IPql~~in~~L~~~TGw~~~pV~Glip~~~Ff~~L 102 (275)
T PRK11913 53 EFLEGLEALGLPKDRIPQLDEINRVLQAATGWQVVPVPGLIPFDVFFELL 102 (275)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHhhcCCEEEecCccCCHHHHHHHH
Confidence 344444444 6677888899999999999975 77899999876655
Done!