Query 044156
Match_columns 288
No_of_seqs 132 out of 736
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 20:52:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044156.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044156hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3szr_A Interferon-induced GTP- 100.0 2.3E-50 7.8E-55 401.6 20.0 261 6-280 240-511 (608)
2 3zvr_A Dynamin-1; hydrolase, D 100.0 1.5E-49 5.2E-54 400.8 21.4 263 8-284 243-514 (772)
3 3ljb_A Interferon-induced GTP- 100.0 4.9E-29 1.7E-33 223.6 11.6 167 109-285 2-175 (271)
4 3t34_A Dynamin-related protein 99.7 2.7E-18 9.4E-23 160.1 3.8 101 8-112 229-330 (360)
5 2x2e_A Dynamin-1; nitration, h 99.6 7E-16 2.4E-20 143.5 9.4 120 7-130 222-344 (353)
6 1jwy_B Dynamin A GTPase domain 98.6 3.5E-08 1.2E-12 89.1 6.4 89 10-102 226-315 (315)
7 2aka_B Dynamin-1; fusion prote 98.2 2.1E-06 7.1E-11 76.6 7.2 79 10-92 220-299 (299)
8 1txp_A HnRNP C, heterogeneous 58.9 8.5 0.00029 21.5 2.6 23 75-97 2-24 (28)
9 2w9y_A CE-FAR-7, fatty acid/re 55.3 13 0.00045 29.3 4.2 71 45-136 36-107 (140)
10 4ap2_B Cullin-3, CUL-3; ubiqui 51.4 40 0.0014 31.1 7.6 77 188-275 316-398 (410)
11 2esy_A LUNG surfactant protein 46.1 8.6 0.00029 22.0 1.3 24 51-74 2-27 (32)
12 4h51_A Aspartate aminotransfer 38.3 78 0.0027 29.1 7.4 85 10-106 270-355 (420)
13 3k4t_A Virion-associated prote 37.8 90 0.0031 22.5 5.9 54 75-129 5-58 (95)
14 2lhr_A Iron-regulated surface 31.1 54 0.0018 22.4 3.6 27 75-101 33-60 (78)
15 3k7y_A Aspartate aminotransfer 30.1 1.1E+02 0.0039 27.6 7.0 82 11-104 255-341 (405)
16 4e97_A Lysozyme; hydrolase, al 29.9 1.5E+02 0.005 23.9 7.0 95 172-271 69-175 (187)
17 2dnx_A Syntaxin-12; snare, HAB 29.9 1.2E+02 0.0041 23.1 6.1 18 88-105 26-43 (130)
18 3kdq_A Uncharacterized conserv 28.6 2.2E+02 0.0074 22.5 8.5 46 84-129 12-62 (154)
19 2ay1_A Aroat, aromatic amino a 24.4 1.8E+02 0.006 25.4 7.1 46 59-104 285-331 (394)
20 2ajj_A NS5A, nonstructural pro 24.1 48 0.0016 18.6 1.9 18 115-132 3-20 (28)
21 3myf_A Sensor protein; HPT, hi 23.4 1.7E+02 0.0059 21.6 5.8 45 57-102 63-116 (119)
22 2hx6_A Ribonuclease, GP61.9; a 23.3 1.3E+02 0.0043 23.5 4.9 67 141-220 13-79 (153)
23 3k66_A Beta-amyloid-like prote 21.0 3E+02 0.01 23.4 7.3 151 86-260 34-208 (239)
24 3ogh_B Protein YCIE; iron-bind 20.6 1.4E+02 0.0049 24.0 5.1 36 67-102 22-59 (171)
No 1
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=100.00 E-value=2.3e-50 Score=401.59 Aligned_cols=261 Identities=11% Similarity=0.112 Sum_probs=228.7
Q ss_pred CCCCcccCCCeEEEecCCcchhhhccCCcccHHHHHHHHHHHhccCCC-CCCC--CCcchHHHHHHHHHHHHHHhhccch
Q 044156 6 QGSPKTADIPWVALIGQSVSIATTQSGSEISLETAWTAESESLKSILI-GAPQ--SQLGRIALADDLAQLIRKRMKVRVP 82 (288)
Q Consensus 6 ~g~~~~L~lG~~~V~nr~q~~~~~di~~~~s~~~a~~~E~~FF~~~p~-~~~~--~~~G~~~L~~~L~~lL~~hI~~~LP 82 (288)
.|+.+||++||++|+|||| +||+.++|+++|++.|.+||++||| +.+. +++||++|+++|+++|.+||+++||
T Consensus 240 ~~~~~~l~~g~~~v~nr~~----~~~~~~~~~~~~~~~E~~fF~~~~~~~~~~~~~~~g~~~L~~~L~~~L~~~i~~~lP 315 (608)
T 3szr_A 240 RNLVFHLKKGYMIVKCRGQ----QEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKATVPCLAEKLTSELITHICKSLP 315 (608)
T ss_dssp --CCSCCSSCEECCCCSCT----TCTTTCCCHHHHTTTHHHHTTTCTTTSGGGGTCC---CCHHHHHHHHHHHHHHHHHH
T ss_pred hCcccccCceEEEEecCch----hhcccCCCHHHHHHHHHHHHccCccccccCccccccHHHHHHHHHHHHHHHHHHhhH
Confidence 4567999999999999999 9999999999999999999999995 6664 5999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHHHHHHHHHhhccCCC-C--cchhHhhhhcchhhhhccC-C
Q 044156 83 NLLSGLQGKSQIVQDELVRLGEQMVQSVEGTRSLSLELCREFEDKFLQLITTGEG-S--GWKIVASFEGNFPNRIKQL-P 158 (288)
Q Consensus 83 ~l~~~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~ll~~i~~F~~~~~~~l~G~~~-g--gari~~~f~~~F~~~i~~~-~ 158 (288)
.|+.+|+.++.++++||.+||+++++++++++.+|++++++|++.++++++|.+. + ..|++..++..|..|...+ +
T Consensus 316 ~l~~~i~~~l~~~~~el~~lg~~~~~~~~~~~~~l~~~~~~f~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~ 395 (608)
T 3szr_A 316 LLENQIKETHQRITEELQKYGVDIPEDENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIEN 395 (608)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccccHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999899999999999999999999999999982 2 2688888888888876655 2
Q ss_pred ----CCCccChhhHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhhchHHHHHHhhhhhhhHHHHHHHHHHHHHhccCC
Q 044156 159 ----LDRRFDINNVQRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLSVDEVIEPLKHVHRVLVGMVSAAANATP 234 (288)
Q Consensus 159 ----~~~~~~~~~I~~~i~~~~G~~~~~fvp~~afe~li~~~i~~l~~Ps~~~v~~v~~~l~~V~~~l~~~v~~~~~~~~ 234 (288)
..... .++|++++++++|+++|+|+|+.+|+.+|++||++|++||..|++. |++++.+++.+++. +
T Consensus 396 ~~~~~~~~~-~~~i~~~~~~~~g~~~~~f~~~~~fe~lvk~qi~~l~~Pa~~~v~~-------V~~~v~~~~~~~~~--~ 465 (608)
T 3szr_A 396 NFQEGHKIL-SRKIQKFENQAAAAELPGFVNYRTFETIVKQQIKALEEPAVDMLHT-------VTDMVRLAFTDVSI--K 465 (608)
T ss_dssp HHHHHHHHH-HHHHHHHHHHCCSCSSSCSSCTHHHHHHHHHHHGGGHHHHHHHHHH-------HHHHHHHHHHHHHH--H
T ss_pred cccccchhH-HHHHHHHHHHccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH--H
Confidence 11122 3789999999999999999999999999999999999999999999 55555666655554 5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCchh
Q 044156 235 GLGRYPLFKREVVAIASAALDGFKNEARKMVVALVDMERAFVPPQH 280 (288)
Q Consensus 235 ~~~~fp~L~~~i~~~i~~~L~~~~~~a~~~v~~li~~E~~~Intnh 280 (288)
+|.+||+|++++.+++.++++++.++|+++|.++|+||..|++.++
T Consensus 466 ~f~rfp~L~~~~~~~i~~~~~~~~~~a~~~i~~li~mE~~~~~~d~ 511 (608)
T 3szr_A 466 NFEEFFNLHRTAKSKIEDIRAEQEREGEKLIRLHFQMEQIVYGAFQ 511 (608)
T ss_dssp HHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCc
Confidence 8999999999999999999999999999999999999999876543
No 2
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=100.00 E-value=1.5e-49 Score=400.84 Aligned_cols=263 Identities=17% Similarity=0.250 Sum_probs=242.2
Q ss_pred CCcccCCCeEEEecCCcchhhhccCCcccHHHHHHHHHHHhccCC-CCCCCCCcchHHHHHHHHHHHHHHhhccchhHHH
Q 044156 8 SPKTADIPWVALIGQSVSIATTQSGSEISLETAWTAESESLKSIL-IGAPQSQLGRIALADDLAQLIRKRMKVRVPNLLS 86 (288)
Q Consensus 8 ~~~~L~lG~~~V~nr~q~~~~~di~~~~s~~~a~~~E~~FF~~~p-~~~~~~~~G~~~L~~~L~~lL~~hI~~~LP~l~~ 86 (288)
...++++||+.|+++|+ .+...-..+.+++..|.+||.++| |..+.+++|+..|++.|++.|..||+++||.|+.
T Consensus 243 ~~~~l~lg~~~VV~iSA----~~G~GvdeL~eaI~~e~~ffpe~P~yd~ltDr~g~~~LaEiLrEkL~~hi~~ELP~l~~ 318 (772)
T 3zvr_A 243 KLLPLRRGYIGVVNRSQ----KDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRN 318 (772)
T ss_dssp CSSCCSSCEEECCCCCC----EESSSSEEHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhccCCceEEecc----cccccchhHHHHHHHHHHhccCCcchhhhhhcccHHHHHHHHHHHHHHHHHhhCccHHH
Confidence 34678899999999999 888877899999999999999997 8777899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHHHHHHHHHhhccCC--------CCcchhHhhhhcchhhhhccCC
Q 044156 87 GLQGKSQIVQDELVRLGEQMVQSVEGTRSLSLELCREFEDKFLQLITTGE--------GSGWKIVASFEGNFPNRIKQLP 158 (288)
Q Consensus 87 ~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~ll~~i~~F~~~~~~~l~G~~--------~ggari~~~f~~~F~~~i~~~~ 158 (288)
+|+.++..++.+|++||++++++++++..+|++++++|++.|.++++|++ +||+||+++|++.|+..+.+++
T Consensus 319 ~I~~~l~s~~vele~~~~~~~~~~~~~~~~ll~~~~~f~~~~~~~i~G~~~~~~~~el~ggari~~if~~~f~~~~~~~~ 398 (772)
T 3zvr_A 319 KLQSQLLSIEKEVDEYKNFRPDDPARKTKALLQMVQQFAVDFEKRIEGSGDQIDTYELSGGARINRIFHERFPFELVKME 398 (772)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSSSCSHHHHHHHHHHHHHHHHHHHTC---------CCHHHHHHHHHHTHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHHHHhCCCCCCcCcccCCCCeeeehhHHHHhHHHHhcCC
Confidence 99999999999999999999888888899999999999999999999998 5899999999999999999998
Q ss_pred CCCccChhhHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhhchHHHHHHhhhhhhhHHHHHHHHHHHHHhccCCCCCC
Q 044156 159 LDRRFDINNVQRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLSVDEVIEPLKHVHRVLVGMVSAAANATPGLGR 238 (288)
Q Consensus 159 ~~~~~~~~~I~~~i~~~~G~~~~~fvp~~afe~li~~~i~~l~~Ps~~~v~~v~~~l~~V~~~l~~~v~~~~~~~~~~~~ 238 (288)
+++..+.++|+++|+|++|.+|++|+|+.+|+.||++||++|++||++||+. |+++|.+++.+|. ++|.|
T Consensus 399 ~~~~~~~~~I~~~i~n~~G~~~~lf~p~~~fe~LVk~QI~rl~ePsl~CVdl-------V~~eL~~iv~~~~---~~l~R 468 (772)
T 3zvr_A 399 FDEKELRREISYAIKNIHDIRTGLFTPDLAFEATVKKQVQKLKEPSIKCVDM-------VVSELTSTIRKCS---EKLQQ 468 (772)
T ss_dssp CCHHHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHTTHHHHHHHHHH-------HHHHHHHHHHHHG---GGGTT
T ss_pred CchhhhHHHHHHHHHhCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH---HHhcc
Confidence 8887777999999999999999999999999999999999999999999999 9999999999996 48999
Q ss_pred ChhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCchhhhhh
Q 044156 239 YPLFKREVVAIASAALDGFKNEARKMVVALVDMERAFVPPQHFIRL 284 (288)
Q Consensus 239 fp~L~~~i~~~i~~~L~~~~~~a~~~v~~li~~E~~~Intnh~~~~ 284 (288)
||+|++++.+++.+.|++++.+|+++|..|||||.+||||||+..+
T Consensus 469 fP~Lr~ei~~iv~~~Lre~~~~t~~~V~~LId~E~ayintnHpdf~ 514 (772)
T 3zvr_A 469 YPRLREEMERIVTTHIREREGRTKEQVMLLIDIELAYMNTNHEDFI 514 (772)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTCTTCC
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCChhhh
Confidence 9999999999999999999999999999999999999999996653
No 3
>3ljb_A Interferon-induced GTP-binding protein MX1; four-helix-bundle, antiviral protein; 2.40A {Homo sapiens}
Probab=99.96 E-value=4.9e-29 Score=223.57 Aligned_cols=167 Identities=10% Similarity=0.094 Sum_probs=131.3
Q ss_pred CHhHHHHHHHHHHHHHHHHHHHhhccCC---CCcchhHhhhhcchhhhhccCCCCCccCh----hhHHHHHHHhcCCCCC
Q 044156 109 SVEGTRSLSLELCREFEDKFLQLITTGE---GSGWKIVASFEGNFPNRIKQLPLDRRFDI----NNVQRIVLEADGYQPY 181 (288)
Q Consensus 109 ~~~~~~~~ll~~i~~F~~~~~~~l~G~~---~ggari~~~f~~~F~~~i~~~~~~~~~~~----~~I~~~i~~~~G~~~~ 181 (288)
+++++..||++.|+.|.+++.+++.|.. .|+.||+..++..|.+|...++....... ++|.+..++++|+++|
T Consensus 2 ~~~e~~~FLidkI~~F~~di~~l~~Gee~~~~~~~rlf~~lr~eF~~w~~~l~~~~~~~~~~i~~ev~~~e~~~rGrELP 81 (271)
T 3ljb_A 2 DENEKMFFLIDKVNAFNQDITALMQGEETVGEEDIRLFTRLRHEFHKWSTIIENNFQEGHKILSRKIQKFENQYRGRELP 81 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCceecccCCcchHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHccCcccC
Confidence 3567899999999999999999999998 45689999999999999988743222222 5778888899999999
Q ss_pred CCCCHHHHHHHHHHHHHhhhchHHHHHHhhhhhhhHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHhHHHH
Q 044156 182 LISPEKGLRSLIKGVLELAKEPSRLSVDEVIEPLKHVHRVLVGMVSAAANATPGLGRYPLFKREVVAIASAALDGFKNEA 261 (288)
Q Consensus 182 ~fvp~~afe~li~~~i~~l~~Ps~~~v~~v~~~l~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~i~~~i~~~L~~~~~~a 261 (288)
+|+|+.+|+.+|++||++|++||++|++. |++++.+++.+++. .+|++||+|++.+.+++.+++.++..+|
T Consensus 82 gFv~y~aFE~lVk~qI~~LeePAl~cl~~-------V~e~l~~~~~~i~~--~~F~rFpnL~~~i~~~i~~i~~~~~~~A 152 (271)
T 3ljb_A 82 GFVNYRTFETIVKQQIKALEEPAVDMLHT-------VTDMVRLAFTDVSI--KNFEEFFNLHRTAKSKIEDIRAEQEREG 152 (271)
T ss_dssp -CTTHHHHHHHHHHHHHTTHHHHHHHHHH-------HHHHHHHHHHHHHH--HHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 55556666666665 5899999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCchhhhhhh
Q 044156 262 RKMVVALVDMERAFVPPQHFIRLV 285 (288)
Q Consensus 262 ~~~v~~li~~E~~~Intnh~~~~~ 285 (288)
.++|+++|+||+ +|.|+|-.|+.
T Consensus 153 e~~I~~~~~mE~-~vytqD~~Y~~ 175 (271)
T 3ljb_A 153 EKLIRLHFQMEQ-IVYCQDQVYRG 175 (271)
T ss_dssp HHHHHHHHHHHT-SCC--------
T ss_pred HHHHHHHHHHhc-ccccCCHHHHH
Confidence 999999999999 77788866643
No 4
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.71 E-value=2.7e-18 Score=160.06 Aligned_cols=101 Identities=20% Similarity=0.354 Sum_probs=83.7
Q ss_pred CCcccCCCeEEEecCCcchhhhccCCcccHHHHHHHHHHHhccCC-CCCCCCCcchHHHHHHHHHHHHHHhhccchhHHH
Q 044156 8 SPKTADIPWVALIGQSVSIATTQSGSEISLETAWTAESESLKSIL-IGAPQSQLGRIALADDLAQLIRKRMKVRVPNLLS 86 (288)
Q Consensus 8 ~~~~L~lG~~~V~nr~q~~~~~di~~~~s~~~a~~~E~~FF~~~p-~~~~~~~~G~~~L~~~L~~lL~~hI~~~LP~l~~ 86 (288)
...++++||++|.|+|+ .++++..++.+++..|..||.+|| |+.+.+++|+++|+.+|+.+|.+||+++||.|+.
T Consensus 229 ~~~~~~~~~~~v~~~s~----~~i~~~~~~~~~~~~e~~ff~~~~~~~~~~~~~g~~~L~~~l~~~l~~~i~~~lp~l~~ 304 (360)
T 3t34_A 229 RSFKLKYPWVGVVNRSQ----ADINKNVDMIAARKREREYFSNTTEYRHLANKMGSEHLAKMLSKHLERVIKSRIPGIQS 304 (360)
T ss_dssp SSSCCSSCCEEECCCCH----HHHHTTCCHHHHHHHHHHHHTTCTTTGGGGGGCSHHHHHHHHHHHHHHHHHTTCTTHHH
T ss_pred ccccccCCeEEEEECCh----HHhccCCCHHHHHHHHHHHhcCCCccccchhhcCHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45789999999999999 999999999999999999999998 7888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCHhH
Q 044156 87 GLQGKSQIVQDELVRLGEQMVQSVEG 112 (288)
Q Consensus 87 ~I~~~l~~~~~eL~~lg~~~~~~~~~ 112 (288)
+|+.++.+++++|.+||+++++++++
T Consensus 305 ~i~~~l~~~~~~l~~lg~~~~~~~~~ 330 (360)
T 3t34_A 305 LINKTVLELETELSRLGKPIAHGTDS 330 (360)
T ss_dssp HHHHHHTTTTCC--------------
T ss_pred HHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 99999999999999999999876643
No 5
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.62 E-value=7e-16 Score=143.51 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=110.1
Q ss_pred CCCcccCCCeEEEecCCcchhhhccCCcccHHHHHHHHHHHhccCC-CCCCCCCcchHHHHHHHHHHHHHHhhccchhHH
Q 044156 7 GSPKTADIPWVALIGQSVSIATTQSGSEISLETAWTAESESLKSIL-IGAPQSQLGRIALADDLAQLIRKRMKVRVPNLL 85 (288)
Q Consensus 7 g~~~~L~lG~~~V~nr~q~~~~~di~~~~s~~~a~~~E~~FF~~~p-~~~~~~~~G~~~L~~~L~~lL~~hI~~~LP~l~ 85 (288)
+...++++||+.|+++|+ .+...-.++.+++..|..||.++| |++...++|+..|++.|++.|..||+++||.|+
T Consensus 222 ~~~~~l~~~~~~v~~~SA----~~~~~i~~l~~~l~~e~~~f~~~~~~~~~~~r~~~~~l~~~l~e~l~~~i~~~lP~l~ 297 (353)
T 2x2e_A 222 NKLLPLRRGYIGVVNRSQ----KDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLR 297 (353)
T ss_dssp TCSSCCTTCEEECCCCCH----HHHHTTCCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccCCceEEEeCCc----ccccccccHHHHHHHHHHHhccCCcccccHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788899999999999 888777889999999999999997 998889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHhHHH--HHHHHHHHHHHHHHHH
Q 044156 86 SGLQGKSQIVQDELVRLGEQMVQSVEGTR--SLSLELCREFEDKFLQ 130 (288)
Q Consensus 86 ~~I~~~l~~~~~eL~~lg~~~~~~~~~~~--~~ll~~i~~F~~~~~~ 130 (288)
.+|+.++..++.+|.+||++++++++++. .+|++++++|++.|+.
T Consensus 298 ~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 344 (353)
T 2x2e_A 298 NKLQSQLLSIEKEVEEYKNFRPDKHGTDSRVDEMLRMYHALKEALSI 344 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCCCCchhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998887776555 9999999999999964
No 6
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=98.63 E-value=3.5e-08 Score=89.11 Aligned_cols=89 Identities=17% Similarity=0.179 Sum_probs=74.5
Q ss_pred cccCCCeEEEecCCcchhhhccCCcccHHHHHHHHHHHhccCC-CCCCCCCcchHHHHHHHHHHHHHHhhccchhHHHHH
Q 044156 10 KTADIPWVALIGQSVSIATTQSGSEISLETAWTAESESLKSIL-IGAPQSQLGRIALADDLAQLIRKRMKVRVPNLLSGL 88 (288)
Q Consensus 10 ~~L~lG~~~V~nr~q~~~~~di~~~~s~~~a~~~E~~FF~~~p-~~~~~~~~G~~~L~~~L~~lL~~hI~~~LP~l~~~I 88 (288)
.++++||+.|.+.|. .+++.+..+.+.+..+.+||..+| |..+..++|+..|...|...|..||+++||.++.+|
T Consensus 226 ~~~~~~~~~v~~~sa----~~~~~~~gv~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lre~l~~~~~~elP~~~~~i 301 (315)
T 1jwy_B 226 IPLTLGFIGVINRSQ----EDIIAKKSIRESLKSEILYFKNHPIYKSIANRSGTAYLSKTLNKLLMFHIRDTLPDLKVKV 301 (315)
T ss_dssp SCCTTCEEECCCCCH----HHHSSSCCHHHHHHHHHHHHHTCTTGGGSGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCeEEEecCCh----hhhccCCCHHHHHHHHHHHHhCCCccccchhccCHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 456689999999999 888889999999999999999887 777778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 044156 89 QGKSQIVQDELVRL 102 (288)
Q Consensus 89 ~~~l~~~~~eL~~l 102 (288)
+..|.+++++|.+|
T Consensus 302 ~~~l~~~~~~l~~~ 315 (315)
T 1jwy_B 302 SKMLSDVQGELSTY 315 (315)
T ss_dssp HHHTC---------
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999875
No 7
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.21 E-value=2.1e-06 Score=76.63 Aligned_cols=79 Identities=16% Similarity=0.196 Sum_probs=69.9
Q ss_pred cccCCCeEEEecCCcchhhhccCCcccHHHHHHHHHHHhccCC-CCCCCCCcchHHHHHHHHHHHHHHhhccchhHHHHH
Q 044156 10 KTADIPWVALIGQSVSIATTQSGSEISLETAWTAESESLKSIL-IGAPQSQLGRIALADDLAQLIRKRMKVRVPNLLSGL 88 (288)
Q Consensus 10 ~~L~lG~~~V~nr~q~~~~~di~~~~s~~~a~~~E~~FF~~~p-~~~~~~~~G~~~L~~~L~~lL~~hI~~~LP~l~~~I 88 (288)
.++++||+.|.+.|. .+-..-..+.+++..|..||..++ |.+...++||..|.+.|++.|..|++++||.++.+|
T Consensus 220 ~~~~~~~~~v~~~SA----~~~~gi~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~l~~~l~~~l~~~~~~~lP~~~~~i 295 (299)
T 2aka_B 220 LPLRRGYIGVVNRSQ----KDIDGKKDITAALAAERKFFLSHPSYRHLADRMGTPYLQKVLNQQLTNHIRDTLPGLRNKL 295 (299)
T ss_dssp SCCTTCEEECCCCCC----BCTTSCBCHHHHHHHHHHHHHHCTTTGGGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCcEEEECCCh----hhccccccHHHHHHHHHHHHhcCCccccchhhhCHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 467779999999998 776556778899999999997775 888888999999999999999999999999999999
Q ss_pred HHHH
Q 044156 89 QGKS 92 (288)
Q Consensus 89 ~~~l 92 (288)
+.+|
T Consensus 296 ~~~~ 299 (299)
T 2aka_B 296 QSQL 299 (299)
T ss_dssp HHHC
T ss_pred HhhC
Confidence 8764
No 8
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=58.94 E-value=8.5 Score=21.53 Aligned_cols=23 Identities=4% Similarity=0.140 Sum_probs=18.8
Q ss_pred HHhhccchhHHHHHHHHHHHHHH
Q 044156 75 KRMKVRVPNLLSGLQGKSQIVQD 97 (288)
Q Consensus 75 ~hI~~~LP~l~~~I~~~l~~~~~ 97 (288)
+-|+++|-+|+..|+.+|...++
T Consensus 2 Q~IkkELtQIK~kvDsLLe~Le~ 24 (28)
T 1txp_A 2 QAIKKELTQIKQKVDSLLENLEK 24 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Confidence 35889999999999999876653
No 9
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=55.31 E-value=13 Score=29.32 Aligned_cols=71 Identities=11% Similarity=0.052 Sum_probs=56.2
Q ss_pred HHHhccCC-CCCCCCCcchHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHH
Q 044156 45 SESLKSIL-IGAPQSQLGRIALADDLAQLIRKRMKVRVPNLLSGLQGKSQIVQDELVRLGEQMVQSVEGTRSLSLELCRE 123 (288)
Q Consensus 45 ~~FF~~~p-~~~~~~~~G~~~L~~~L~~lL~~hI~~~LP~l~~~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~ll~~i~~ 123 (288)
++||.+|. |++ -.-+..-++..=|.|-..+.+.....++.+..|+|. . ..|+-+++..
T Consensus 36 kev~kn~~~f~~--------------e~e~i~alK~KSp~L~~K~~~l~~~lk~Ki~~L~Pe------a-k~Fv~kli~~ 94 (140)
T 2w9y_A 36 HEVFQKHSCFSQ--------------CGEMIDEVSKKHPELGKRLATVLEGNKKRLDGLSPA------A-VEYAKKLIHM 94 (140)
T ss_dssp HHHHTTCCC------------------TTHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCCHH------H-HHHHHHHHHH
T ss_pred HHHHHHHhhcCC--------------HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHcCCHH------H-HHHHHHHHHH
Confidence 46888774 532 233556677788999999999999999999999653 2 7899999999
Q ss_pred HHHHHHHhhccCC
Q 044156 124 FEDKFLQLITTGE 136 (288)
Q Consensus 124 F~~~~~~~l~G~~ 136 (288)
+...+.+.+.|..
T Consensus 95 ~r~l~~~~~~G~k 107 (140)
T 2w9y_A 95 VTTTLCSLTVGKP 107 (140)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHhcCCC
Confidence 9999999999995
No 10
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens}
Probab=51.39 E-value=40 Score=31.07 Aligned_cols=77 Identities=6% Similarity=-0.005 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHhhhch------HHHHHHhhhhhhhHHHHHHHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHhHHHH
Q 044156 188 GLRSLIKGVLELAKEP------SRLSVDEVIEPLKHVHRVLVGMVSAAANATPGLGRYPLFKREVVAIASAALDGFKNEA 261 (288)
Q Consensus 188 afe~li~~~i~~l~~P------s~~~v~~v~~~l~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~i~~~i~~~L~~~~~~a 261 (288)
+|...|+++-...-.. +..+|+.+-+ +++.+..++.. .|...+.+..++..+...+++.....+
T Consensus 316 ~~~~~I~~~G~~iv~~~~~~~~~~~~V~~LL~----l~~k~~~iv~~------~F~~d~~f~~al~~AF~~fiN~~~~sp 385 (410)
T 4ap2_B 316 CMSSYLREQGKALVSEEGEGKNPVDYRQGLDD----LKSRFDRFLLE------SFNNDRLFKQTIAGDFEYFLNLNSRSP 385 (410)
T ss_dssp HHHHHHHHHHHHHHHC------CHHHHHHHHH----HHHHHHHHHHH------TSTTCHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHhccccccChHHHHHHHHH----HHHHHHHHHHH------HcCCCHHHHHHHHHHHHHHHcCCCCCH
Confidence 4555555544333221 2356666444 88888888875 588999999999999999999987666
Q ss_pred HHHHHHHHHHhhcC
Q 044156 262 RKMVVALVDMERAF 275 (288)
Q Consensus 262 ~~~v~~li~~E~~~ 275 (288)
+.|...+|....+
T Consensus 386 -Ella~y~D~~~~~ 398 (410)
T 4ap2_B 386 -EYLAENLYFQSHH 398 (410)
T ss_dssp --------------
T ss_pred -HHHHHHccCcccc
Confidence 9999999888554
No 11
>2esy_A LUNG surfactant protein C; lipid binding protein; NMR {Synthetic}
Probab=46.12 E-value=8.6 Score=22.00 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=18.6
Q ss_pred CC-CCCC-CCCcchHHHHHHHHHHHH
Q 044156 51 IL-IGAP-QSQLGRIALADDLAQLIR 74 (288)
Q Consensus 51 ~p-~~~~-~~~~G~~~L~~~L~~lL~ 74 (288)
+| |+.. ..|+|||.--..|.++|.
T Consensus 2 PPdYSa~P~grf~IPccp~~lKrLli 27 (32)
T 2esy_A 2 PPDYSAAPRGRFGIPFFPVHLKRLLI 27 (32)
T ss_dssp CCCCCSCCCSSSSCCSTHHHHHHHHH
T ss_pred CCccccCcCccccCccccccceeEEE
Confidence 56 8764 499999988877877775
No 12
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=38.28 E-value=78 Score=29.06 Aligned_cols=85 Identities=18% Similarity=0.144 Sum_probs=55.1
Q ss_pred cccCCCeEEEecCCcchhhhccCCcccHHHHHHHHHHHhccCCCCCCCCCcchHHHHHHHHH-HHHHHhhccchhHHHHH
Q 044156 10 KTADIPWVALIGQSVSIATTQSGSEISLETAWTAESESLKSILIGAPQSQLGRIALADDLAQ-LIRKRMKVRVPNLLSGL 88 (288)
Q Consensus 10 ~~L~lG~~~V~nr~q~~~~~di~~~~s~~~a~~~E~~FF~~~p~~~~~~~~G~~~L~~~L~~-lL~~hI~~~LP~l~~~I 88 (288)
.-++.||+++.+... .. ......-...-...-|+... ..|-...+.-|+. .|..+.++.+-.++..+
T Consensus 270 ~G~RvG~~~~~~~~~----~~-------~~~~~~~l~~~~r~~~s~~p-~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~ 337 (420)
T 4h51_A 270 YSERAGTLSLLLKDK----TK-------RADVKSVMDSLIREEYTCPP-AHGARLAHLILSNNELRKEWEAELSAMAERI 337 (420)
T ss_dssp GGGCEEEEEEECSCH----HH-------HHHHHHHHHHHHHTTTSSCC-HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred ccCceEEEEecccCH----HH-------HHHHHHHHHHhhhcccCcch-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 568899999988776 32 11111111222222254433 3555555555553 56777888889999999
Q ss_pred HHHHHHHHHHHHHhCCCC
Q 044156 89 QGKSQIVQDELVRLGEQM 106 (288)
Q Consensus 89 ~~~l~~~~~eL~~lg~~~ 106 (288)
..+....-+.|.++|.+.
T Consensus 338 ~~~R~~l~~~L~~~g~~~ 355 (420)
T 4h51_A 338 RTMRRTVYDELLRLQTPG 355 (420)
T ss_dssp HHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 999999999999998753
No 13
>3k4t_A Virion-associated protein; coiled-coil, viral protein, tetramer, DNA-binding protein, P binding; 2.59A {Cauliflower mosaic virus}
Probab=37.77 E-value=90 Score=22.53 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=35.5
Q ss_pred HHhhccchhHHHHHHHHHHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHHHHHHHH
Q 044156 75 KRMKVRVPNLLSGLQGKSQIVQDELVRLGEQMVQSVEGTRSLSLELCREFEDKFL 129 (288)
Q Consensus 75 ~hI~~~LP~l~~~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~ll~~i~~F~~~~~ 129 (288)
..|.++.-.+...+...-.+..+=|..+|...|.. +.--..--.+|++.++.+.
T Consensus 5 ~~i~~Ei~~~~~~~~~~~~~i~aiL~~~gs~~p~~-~~lEsiAAKIIkDisdkId 58 (95)
T 3k4t_A 5 NQIQKEVSEILSDQKSMKADIKAILELLGSQNPIK-ESLETVAAKIVNDLTKLIN 58 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcch-hhHHHHHHHHHHHHHHHHh
Confidence 45677777788888888889999999999876521 1112233455555555544
No 14
>2lhr_A Iron-regulated surface determinant protein H; heme acquisition, iron uptake, NEAT domain, hemoglobin recep metal transport; NMR {Staphylococcus aureus subsp}
Probab=31.13 E-value=54 Score=22.43 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=23.0
Q ss_pred HHhhccch-hHHHHHHHHHHHHHHHHHH
Q 044156 75 KRMKVRVP-NLLSGLQGKSQIVQDELVR 101 (288)
Q Consensus 75 ~hI~~~LP-~l~~~I~~~l~~~~~eL~~ 101 (288)
+.|+..|| .++.+-.++|.+++.+|..
T Consensus 33 ~kiqdkLPeklkaeYk~KL~~tk~~Ld~ 60 (78)
T 2lhr_A 33 EKLQEKLPEKYKAEYKKKLDQTRVELAD 60 (78)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 46788899 7899999999999998865
No 15
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=30.06 E-value=1.1e+02 Score=27.59 Aligned_cols=82 Identities=6% Similarity=-0.004 Sum_probs=47.3
Q ss_pred ccCCCeEEEecCCcchhhhccCCcccHHHHHHHHHHHhccCCCCCCCCCcchHHHHHHHHH-HHHHHhhccchhHHHHHH
Q 044156 11 TADIPWVALIGQSVSIATTQSGSEISLETAWTAESESLKSILIGAPQSQLGRIALADDLAQ-LIRKRMKVRVPNLLSGLQ 89 (288)
Q Consensus 11 ~L~lG~~~V~nr~q~~~~~di~~~~s~~~a~~~E~~FF~~~p~~~~~~~~G~~~L~~~L~~-lL~~hI~~~LP~l~~~I~ 89 (288)
-+++||+++...+. . +.++..........++|+.. ...|....+.-|+. -|.++-.+.+-.++.++.
T Consensus 255 GlRiG~~~~~~~~~----~-------~~~~~~~~l~~~~~~~~~~~-~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~ 322 (405)
T 3k7y_A 255 GERAGALHIVCKNQ----E-------EKKIVFNNLCFIVRKFYSSP-VIHTNRILCQLLNNQNLKLNWIKELSQLSQRIT 322 (405)
T ss_dssp TTTEEEEEEECSSH----H-------HHHHHHHHHHHHHHTTTSSC-CHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEEEeCCH----H-------HHHHHHHHHHHHHhcccCCC-cHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 48899998766655 2 12333333333344456432 22343344444443 244455566667788888
Q ss_pred HHHHHHHHHHH----HhCC
Q 044156 90 GKSQIVQDELV----RLGE 104 (288)
Q Consensus 90 ~~l~~~~~eL~----~lg~ 104 (288)
+......+.|. ++|.
T Consensus 323 ~~R~~l~~~L~~~~~~~g~ 341 (405)
T 3k7y_A 323 NNRILFFNKLETYQKKYNL 341 (405)
T ss_dssp HHHHHHHHHHHHHGGGGTC
T ss_pred HHHHHHHHHHHhhhhhcCC
Confidence 88888888888 7774
No 16
>4e97_A Lysozyme; hydrolase, alkylation with 2-mercaptoethanol; 1.30A {Enterobacteria phage T4} PDB: 4ekp_A 4ekq_A* 4ekr_A 4eks_A
Probab=29.88 E-value=1.5e+02 Score=23.89 Aligned_cols=95 Identities=11% Similarity=0.031 Sum_probs=58.4
Q ss_pred HHHhcCCCCCCCCCHHHHHHHHHHHHHhhhchHHHHH------HhhhhhhhHHHHHHHHHHHHHhccCCCCCCChhHHHH
Q 044156 172 VLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLSV------DEVIEPLKHVHRVLVGMVSAAANATPGLGRYPLFKRE 245 (288)
Q Consensus 172 i~~~~G~~~~~fvp~~afe~li~~~i~~l~~Ps~~~v------~~v~~~l~~V~~~l~~~v~~~~~~~~~~~~fp~L~~~ 245 (288)
.....|...+.-+++...+.|..+-+.....-...++ +..-+. +...|.+++-++=. ..|.+|+++..+
T Consensus 69 ~~~~~g~~~g~~it~~~a~~ll~~Dl~~~~~~~~~~~~~~~~~~~l~~~---~~~ALvsm~FNlG~--~~l~kf~~ml~~ 143 (187)
T 4e97_A 69 LDKAIGRNCNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAV---RRCAAINHVFQMGV--TGVAGFTNVLRM 143 (187)
T ss_dssp HHHHHTSCCTTBCCHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHSCHH---HHHHHHHHHHHHCH--HHHHTCHHHHHH
T ss_pred cCccccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCHH---HHHHheeeeeccCC--cchhhCHHHHHH
Confidence 4455677777778888777777766665544332222 122222 56667777766532 356688888777
Q ss_pred HH-----HHHHHHHH-HhHHHHHHHHHHHHHH
Q 044156 246 VV-----AIASAALD-GFKNEARKMVVALVDM 271 (288)
Q Consensus 246 i~-----~~i~~~L~-~~~~~a~~~v~~li~~ 271 (288)
+. .++.+.++ .+...+-.+...++++
T Consensus 144 ln~gd~~~Aa~Em~dSrW~kQt~~Ra~rl~~~ 175 (187)
T 4e97_A 144 LQQKRWDEAAVNLAKSRWYNQCPDRAKRVITT 175 (187)
T ss_dssp HHTTCHHHHHHHHTTSHHHHHSHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHhchhhccCcHHHHHHHHH
Confidence 74 45556664 6777777777777654
No 17
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.85 E-value=1.2e+02 Score=23.06 Aligned_cols=18 Identities=11% Similarity=0.377 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHhCCC
Q 044156 88 LQGKSQIVQDELVRLGEQ 105 (288)
Q Consensus 88 I~~~l~~~~~eL~~lg~~ 105 (288)
|+..+...++.+..||.+
T Consensus 26 In~~vs~l~r~v~~LGT~ 43 (130)
T 2dnx_A 26 ISQATAQIKNLMSQLGTK 43 (130)
T ss_dssp HHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 444444444444444443
No 18
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=28.57 E-value=2.2e+02 Score=22.50 Aligned_cols=46 Identities=15% Similarity=0.088 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHh-----CCCCCCCHhHHHHHHHHHHHHHHHHHH
Q 044156 84 LLSGLQGKSQIVQDELVRL-----GEQMVQSVEGTRSLSLELCREFEDKFL 129 (288)
Q Consensus 84 l~~~I~~~l~~~~~eL~~l-----g~~~~~~~~~~~~~ll~~i~~F~~~~~ 129 (288)
++..+++++.+.+.++..- |+.|+.+|.+-...+-.++..+...+.
T Consensus 12 lRadl~kri~qL~~ri~~n~~vQEGe~P~edp~~Ll~El~~~~~~L~~Li~ 62 (154)
T 3kdq_A 12 QRVEAQRRYSELNQLLLDVAKVQEGDQPAENPHEILTELEELTTRINDLVR 62 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTTEEETTCCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCeecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888764 788888887766666666666655554
No 19
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=24.39 E-value=1.8e+02 Score=25.36 Aligned_cols=46 Identities=17% Similarity=0.172 Sum_probs=27.5
Q ss_pred CcchHHHHHHHHHH-HHHHhhccchhHHHHHHHHHHHHHHHHHHhCC
Q 044156 59 QLGRIALADDLAQL-IRKRMKVRVPNLLSGLQGKSQIVQDELVRLGE 104 (288)
Q Consensus 59 ~~G~~~L~~~L~~l-L~~hI~~~LP~l~~~I~~~l~~~~~eL~~lg~ 104 (288)
-.+...+...|... |.++..+.+..++..+....+...+.|.++|+
T Consensus 285 ~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~ 331 (394)
T 2ay1_A 285 FHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSG 331 (394)
T ss_dssp CHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34555555555543 33334445666777777777777777777763
No 20
>2ajj_A NS5A, nonstructural protein 5A; IN-plane membrane anchor domain, amphipathic alpha-helix, membrane protein; NMR {Synthetic} PDB: 2ajm_A 2ajn_A 2ajo_A
Probab=24.13 E-value=48 Score=18.58 Aligned_cols=18 Identities=11% Similarity=0.191 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 044156 115 SLSLELCREFEDKFLQLI 132 (288)
Q Consensus 115 ~~ll~~i~~F~~~~~~~l 132 (288)
.|+++++.+|.+.++..+
T Consensus 3 NYiLdLl~~lh~~~~~~i 20 (28)
T 2ajj_A 3 NYVLDLIYSLHKQINRGL 20 (28)
T ss_dssp CSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHH
Confidence 478889998888887654
No 21
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=23.45 E-value=1.7e+02 Score=21.61 Aligned_cols=45 Identities=22% Similarity=0.174 Sum_probs=28.3
Q ss_pred CCCcchHHHHHHHHHHHHHHhhc---------cchhHHHHHHHHHHHHHHHHHHh
Q 044156 57 QSQLGRIALADDLAQLIRKRMKV---------RVPNLLSGLQGKSQIVQDELVRL 102 (288)
Q Consensus 57 ~~~~G~~~L~~~L~~lL~~hI~~---------~LP~l~~~I~~~l~~~~~eL~~l 102 (288)
+..+|.+.|+.-. ..|-...+. .++.|..+|.......+..|.++
T Consensus 63 a~~~Ga~~L~~~~-~~LE~~~r~~~~~~~l~~~~~~L~~ei~~v~~~~~~~l~~~ 116 (119)
T 3myf_A 63 SCYCGVPTTQRLC-QEIESALKRQTPVEDLEPEILELLDELTKVESAVKQVLSQL 116 (119)
T ss_dssp HTTTTCHHHHHHH-HHHHHHHHTTCCGGGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3789999998733 344444443 45566666666666666666654
No 22
>2hx6_A Ribonuclease, GP61.9; alpha/beta fold, hydrolase; NMR {Enterobacteria phage T4}
Probab=23.25 E-value=1.3e+02 Score=23.55 Aligned_cols=67 Identities=15% Similarity=0.102 Sum_probs=37.7
Q ss_pred hhHhhhhcchhhhhccCCCCCccChhhHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhhhchHHHHHHhhhhhhhHHHH
Q 044156 141 KIVASFEGNFPNRIKQLPLDRRFDINNVQRIVLEADGYQPYLISPEKGLRSLIKGVLELAKEPSRLSVDEVIEPLKHVHR 220 (288)
Q Consensus 141 ri~~~f~~~F~~~i~~~~~~~~~~~~~I~~~i~~~~G~~~~~fvp~~afe~li~~~i~~l~~Ps~~~v~~v~~~l~~V~~ 220 (288)
+++.+|...|++.- ..|+++..++.+..-.+-.++--...+|++.|+ +.=.++++..+.+|+..|++
T Consensus 13 KLRR~fEtEFr~iN-----------~~I~~a~~~~g~~~F~ikYs~HllDr~i~ReID--e~yvf~Lf~ki~~hv~Ei~e 79 (153)
T 2hx6_A 13 KLRRHFESEFRQIN-----------NEIREASKAAGVSSFHLKYSQALLDRAIQREID--ETYVFELFHKIKDHVLEVNE 79 (153)
T ss_dssp HHHHHHHHHHHHHH-----------HHHHHHHHHHTSCCCEEECCHHHHHHHHHTSTT--CCHHHHHHHHGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHhcCCCeEEEEecHHHHHHHHHhhcc--HHHHHHHHHHHhhhHHHHHH
Confidence 67788877776643 355555443333323233344444444444443 33488899998888655554
No 23
>3k66_A Beta-amyloid-like protein; X-RAY amyloid precursor protein, heparin binding, alternative splicing, developmental protein, differentiation; 2.70A {Caenorhabditis elegans} PDB: 3k6b_A*
Probab=21.03 E-value=3e+02 Score=23.43 Aligned_cols=151 Identities=11% Similarity=0.163 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHhHHHHHHHHHHHHHHHHHHHhhccCCCC---------cchhHhhhhcchhhhhcc
Q 044156 86 SGLQGKSQIVQDELVRLGEQMVQSVEGTRSLSLELCREFEDKFLQLITTGEGS---------GWKIVASFEGNFPNRIKQ 156 (288)
Q Consensus 86 ~~I~~~l~~~~~eL~~lg~~~~~~~~~~~~~ll~~i~~F~~~~~~~l~G~~~g---------gari~~~f~~~F~~~i~~ 156 (288)
.+|.+.-++.+.+...|+. .+|.+--.+=-.++..|+..+.+ ++....+ -+|+-+.+++..+..+.
T Consensus 34 ~kVMkEW~Eae~q~k~l~k---aDpk~Ae~~k~~m~~rFQ~~v~s-LEqE~a~ErqqL~etH~qRV~a~LNerrr~Ale- 108 (239)
T 3k66_A 34 DKVMKEWGDLETRYNEQKA---KDPKGAEKFKSQMNARFQKTVSS-LEEEHKRMRKEIEAVHEERVQAMLNEKKRDATH- 108 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HSHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhccc---cCHHHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 4455566677777777765 33433244556678889988864 4333100 13555555544433332
Q ss_pred CCCCCccChhhHHHHHH-HhcCCCCCCCCCHHHHHHHHHH-------HHHhhhch-------HHHHHHhhhhhhhHHHHH
Q 044156 157 LPLDRRFDINNVQRIVL-EADGYQPYLISPEKGLRSLIKG-------VLELAKEP-------SRLSVDEVIEPLKHVHRV 221 (288)
Q Consensus 157 ~~~~~~~~~~~I~~~i~-~~~G~~~~~fvp~~afe~li~~-------~i~~l~~P-------s~~~v~~v~~~l~~V~~~ 221 (288)
.-..++. +... |..+--..+.+.+|+- .|.+|+.- +...-..|..+|..|.
T Consensus 109 ----------~y~~AL~~q~~p--P~~~~Vl~aLk~yiRae~KDR~Htl~hy~Hl~~~dpe~A~~~k~~vl~hL~~Id-- 174 (239)
T 3k66_A 109 ----------DYRQALATHVNK--PNKHSVLQSLKAYIRAEEKDRMHTLNRYRHLLKADSKEAAAYKPTVIHRLRYID-- 174 (239)
T ss_dssp ----------HHHHHHHHHHHS--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHTTHHHHHHHHHHHH--
T ss_pred ----------HHHHHHHhcCCC--CChHHHHHHHHHHHHHHHHHHHhHHHHHHHHHccCHHHHHHhhHHHHHHHHHHH--
Confidence 1111111 1100 1000111233344443 34444333 2223333333332222
Q ss_pred HHHHHHHHhccCCCCCCChhHHHHHHHHHHHHHHHhHHH
Q 044156 222 LVGMVSAAANATPGLGRYPLFKREVVAIASAALDGFKNE 260 (288)
Q Consensus 222 l~~~v~~~~~~~~~~~~fp~L~~~i~~~i~~~L~~~~~~ 260 (288)
..+.+.+. -+.++|.|...|...|.+++......
T Consensus 175 --~r~NqSL~---lL~~~P~L~~~vrp~i~~~~~~~r~~ 208 (239)
T 3k66_A 175 --LRINGTLA---MLRDFPDLEKYVRPIAVTYWKDYRDE 208 (239)
T ss_dssp --HHHHHHHH---TTTTCHHHHTTTHHHHHHHHHHHHHH
T ss_pred --HHHhhhHH---HHHcCchHHHHHhHHHHHHHHHHhcc
Confidence 23333332 58899999999999999888776653
No 24
>3ogh_B Protein YCIE; iron-binding, MCSG, four-helix-bundle, structural genomics, protein structure initiative; HET: MSE; 1.65A {Escherichia coli O6}
Probab=20.57 E-value=1.4e+02 Score=23.97 Aligned_cols=36 Identities=11% Similarity=0.265 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHHHHHh
Q 044156 67 DDLAQLIRKRMKV--RVPNLLSGLQGKSQIVQDELVRL 102 (288)
Q Consensus 67 ~~L~~lL~~hI~~--~LP~l~~~I~~~l~~~~~eL~~l 102 (288)
+.+.+.|-..+++ +-|.|+..++..+.+++....+|
T Consensus 22 ~Q~~~aL~~ma~~~a~~peLk~a~e~Hl~eT~~qi~rL 59 (171)
T 3ogh_B 22 KQAESMLESMASRIDNYPELRARIEQHLSETKNQIVQL 59 (171)
T ss_dssp HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888865 69999999999999998877664
Done!