Query 044157
Match_columns 481
No_of_seqs 190 out of 1514
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 11:57:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044157.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044157hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10483 tryptophan permease; 100.0 5.4E-53 1.2E-57 430.4 43.2 386 84-480 5-409 (414)
2 PRK09664 tryptophan permease T 100.0 2.5E-52 5.4E-57 425.1 42.3 382 88-480 7-410 (415)
3 PRK15132 tyrosine transporter 100.0 4.5E-49 9.8E-54 403.3 42.7 380 90-480 3-398 (403)
4 PF03222 Trp_Tyr_perm: Tryptop 100.0 1.3E-48 2.8E-53 401.5 40.8 373 89-472 2-393 (394)
5 TIGR00837 araaP aromatic amino 100.0 1.3E-41 2.8E-46 350.6 36.3 360 95-465 2-380 (381)
6 COG0814 SdaC Amino acid permea 100.0 1.8E-37 3.9E-42 321.0 38.6 387 86-480 5-414 (415)
7 PRK13629 threonine/serine tran 100.0 7.2E-35 1.6E-39 297.3 38.6 369 91-476 20-441 (443)
8 KOG1303 Amino acid transporter 100.0 3.8E-34 8.3E-39 294.5 30.4 346 86-440 34-401 (437)
9 PTZ00206 amino acid transporte 100.0 1.3E-31 2.7E-36 282.2 37.9 336 87-437 57-426 (467)
10 TIGR00814 stp serine transport 100.0 5.2E-31 1.1E-35 270.7 33.0 340 91-438 4-377 (397)
11 TIGR00908 2A0305 ethanolamine 100.0 1.5E-27 3.3E-32 250.6 39.1 378 85-475 4-406 (442)
12 PLN03074 auxin influx permease 100.0 5E-28 1.1E-32 254.2 34.6 346 87-439 43-402 (473)
13 PRK15049 L-asparagine permease 100.0 4E-27 8.7E-32 250.5 40.7 378 86-475 26-442 (499)
14 PRK11387 S-methylmethionine tr 100.0 1.8E-26 3.9E-31 244.3 42.6 377 86-473 12-428 (471)
15 COG1113 AnsP Gamma-aminobutyra 100.0 9.5E-28 2.1E-32 241.6 30.4 379 86-475 11-424 (462)
16 PRK10249 phenylalanine transpo 100.0 1.2E-26 2.5E-31 244.8 39.9 376 85-472 18-427 (458)
17 PRK10746 putative transport pr 100.0 6.4E-26 1.4E-30 239.2 42.7 377 86-474 8-422 (461)
18 TIGR00909 2A0306 amino acid tr 100.0 2.3E-26 5.1E-31 240.6 36.7 368 87-469 2-403 (429)
19 PRK11049 D-alanine/D-serine/gl 100.0 1.8E-25 4E-30 236.4 42.1 373 86-470 18-429 (469)
20 TIGR00906 2A0303 cationic amin 100.0 3.3E-26 7.1E-31 246.0 36.9 341 86-439 26-410 (557)
21 PRK10655 potE putrescine trans 100.0 8.6E-26 1.9E-30 237.1 38.9 354 86-453 4-387 (438)
22 PRK10836 lysine transporter; P 100.0 2.9E-25 6.2E-30 236.1 42.6 381 86-477 13-439 (489)
23 PRK10580 proY putative proline 100.0 3.8E-25 8.2E-30 233.4 42.6 374 86-471 7-417 (457)
24 PRK10238 aromatic amino acid t 100.0 2.5E-25 5.5E-30 234.5 40.2 377 86-474 10-420 (456)
25 PRK11357 frlA putative fructos 100.0 1.2E-25 2.5E-30 236.6 35.8 377 86-475 6-410 (445)
26 TIGR01773 GABAperm gamma-amino 100.0 7.9E-25 1.7E-29 230.7 41.7 376 86-473 10-421 (452)
27 KOG1304 Amino acid transporter 100.0 6.6E-26 1.4E-30 230.1 28.7 371 87-475 44-443 (449)
28 PRK10197 gamma-aminobutyrate t 99.9 1.4E-24 3.1E-29 228.1 39.1 365 98-474 2-402 (446)
29 KOG1287 Amino acid transporter 99.9 2.6E-26 5.7E-31 234.8 24.9 379 83-477 7-417 (479)
30 PRK10644 arginine:agmatin anti 99.9 2.9E-24 6.3E-29 225.9 40.1 369 86-472 6-404 (445)
31 PF01490 Aa_trans: Transmembra 99.9 1E-29 2.2E-34 263.9 -2.5 342 88-442 1-376 (409)
32 TIGR00913 2A0310 amino acid pe 99.9 4.8E-24 1.1E-28 226.3 39.9 381 87-475 1-430 (478)
33 PRK10435 cadB lysine/cadaverin 99.9 5.1E-24 1.1E-28 223.4 38.1 281 86-376 3-297 (435)
34 TIGR00905 2A0302 transporter, 99.9 1.6E-23 3.4E-28 221.9 38.4 370 86-470 5-410 (473)
35 TIGR03810 arg_ornith_anti argi 99.9 7E-23 1.5E-27 216.7 39.9 344 88-442 1-382 (468)
36 TIGR00911 2A0308 L-type amino 99.9 2.9E-23 6.2E-28 221.5 35.5 371 85-471 39-442 (501)
37 COG0833 LysP Amino acid transp 99.9 3.4E-23 7.4E-28 212.8 29.7 382 86-477 42-468 (541)
38 PRK11021 putative transporter; 99.9 1.3E-21 2.9E-26 203.6 40.1 337 90-440 1-362 (410)
39 TIGR00912 2A0309 spore germina 99.9 5.7E-21 1.2E-25 195.4 36.0 334 89-436 2-350 (359)
40 KOG1305 Amino acid transporter 99.9 5.4E-22 1.2E-26 203.6 25.0 338 87-440 3-375 (411)
41 TIGR00930 2a30 K-Cl cotranspor 99.9 1E-20 2.2E-25 212.8 37.1 348 82-440 70-486 (953)
42 KOG4303 Vesicular inhibitory a 99.9 1.8E-22 4E-27 194.1 16.2 364 66-441 92-483 (524)
43 PF13520 AA_permease_2: Amino 99.9 1.1E-19 2.3E-24 190.1 37.7 342 90-444 1-379 (426)
44 COG0531 PotE Amino acid transp 99.9 3.8E-19 8.2E-24 187.7 37.8 366 81-457 5-404 (466)
45 KOG1286 Amino acid transporter 99.9 5.8E-21 1.3E-25 202.4 21.9 384 84-475 26-461 (554)
46 TIGR03428 ureacarb_perm permea 99.9 1.4E-17 3E-22 176.7 41.8 374 86-470 11-437 (475)
47 TIGR00907 2A0304 amino acid pe 99.9 9.6E-18 2.1E-22 178.3 39.4 373 85-469 9-436 (482)
48 TIGR03813 put_Glu_GABA_T putat 99.8 2.4E-17 5.3E-22 174.8 39.0 364 88-467 1-410 (474)
49 TIGR00910 2A0307_GadC glutamat 99.8 2.9E-17 6.3E-22 175.3 37.5 365 87-467 3-413 (507)
50 PRK15238 inner membrane transp 99.8 2.4E-16 5.1E-21 168.1 36.8 357 86-456 5-435 (496)
51 PF00324 AA_permease: Amino ac 99.8 2.8E-18 6E-23 182.2 15.9 364 97-471 4-426 (478)
52 COG3949 Uncharacterized membra 99.7 1.9E-15 4.1E-20 146.5 28.5 275 91-382 4-291 (349)
53 PF03845 Spore_permease: Spore 99.7 3.7E-15 8E-20 150.2 32.0 286 89-384 1-296 (320)
54 TIGR00796 livcs branched-chain 99.5 2.6E-10 5.6E-15 116.5 33.6 329 97-454 2-366 (378)
55 KOG1289 Amino acid transporter 99.3 8.3E-09 1.8E-13 107.1 31.6 255 65-326 25-312 (550)
56 COG1457 CodB Purine-cytosine p 99.0 1.3E-06 2.9E-11 90.1 31.2 153 158-312 82-241 (442)
57 PRK11017 codB cytosine permeas 99.0 4.6E-06 1E-10 86.8 35.7 152 86-248 7-161 (404)
58 TIGR00835 agcS amino acid carr 99.0 5.6E-06 1.2E-10 85.7 35.2 153 88-247 45-206 (425)
59 TIGR02119 panF sodium/pantothe 98.9 1E-05 2.2E-10 86.0 36.4 153 85-243 37-194 (471)
60 TIGR00813 sss transporter, SSS 98.9 5E-06 1.1E-10 86.7 33.4 146 87-239 2-149 (407)
61 PRK11375 allantoin permease; P 98.9 2.2E-06 4.8E-11 91.1 30.5 220 86-314 23-275 (484)
62 PF00474 SSF: Sodium:solute sy 98.9 3.6E-06 7.8E-11 87.7 31.4 145 87-238 5-152 (406)
63 PRK09442 panF sodium/panthothe 98.9 1.3E-05 2.9E-10 85.4 35.9 152 85-242 38-194 (483)
64 TIGR00800 ncs1 NCS1 nucleoside 98.8 7.7E-06 1.7E-10 86.2 31.6 223 84-314 8-255 (442)
65 TIGR02121 Na_Pro_sym sodium/pr 98.8 0.00013 2.9E-09 77.8 38.5 152 85-240 33-190 (487)
66 PRK00701 manganese transport p 98.7 3.2E-05 6.9E-10 81.1 31.6 142 95-244 39-183 (439)
67 PRK12488 acetate permease; Pro 98.7 8.9E-05 1.9E-09 80.3 36.0 150 85-242 64-216 (549)
68 COG1914 MntH Mn2+ and Fe2+ tra 98.7 7.3E-05 1.6E-09 77.3 33.1 160 87-254 14-174 (416)
69 COG0591 PutP Na+/proline sympo 98.7 0.00015 3.3E-09 77.4 36.0 145 84-234 34-183 (493)
70 PF01566 Nramp: Natural resist 98.7 3.8E-05 8.3E-10 78.7 29.4 246 136-384 24-289 (358)
71 PRK09395 actP acetate permease 98.6 0.00038 8.1E-09 75.5 37.8 146 85-238 66-214 (551)
72 PRK15419 proline:sodium sympor 98.6 0.00056 1.2E-08 73.4 38.3 152 85-240 37-194 (502)
73 TIGR03648 Na_symport_lg probab 98.6 0.0002 4.2E-09 77.8 34.9 142 85-234 29-173 (552)
74 TIGR02358 thia_cytX probable h 98.6 0.00041 8.9E-09 71.8 34.5 190 118-316 26-222 (386)
75 TIGR02711 symport_actP cation/ 98.6 0.00069 1.5E-08 73.4 37.0 147 86-240 65-214 (549)
76 PF01235 Na_Ala_symp: Sodium:a 98.5 0.00088 1.9E-08 69.2 34.2 157 86-248 15-180 (416)
77 COG0733 Na+-dependent transpor 98.4 0.00069 1.5E-08 69.8 29.1 284 90-382 9-337 (439)
78 PF02133 Transp_cyt_pur: Perme 98.3 3.5E-05 7.6E-10 81.1 18.6 221 86-315 5-250 (440)
79 PF05525 Branch_AA_trans: Bran 98.3 0.0022 4.8E-08 66.6 31.0 318 91-435 4-351 (427)
80 PRK10484 putative transporter; 98.2 0.0075 1.6E-07 65.0 34.9 90 84-180 34-124 (523)
81 COG1115 AlsT Na+/alanine sympo 98.2 0.0073 1.6E-07 62.2 31.8 167 74-247 48-223 (452)
82 TIGR01197 nramp NRAMP (natural 98.2 0.0075 1.6E-07 62.3 32.6 152 95-254 9-163 (390)
83 PRK15433 branched-chain amino 98.0 0.027 5.9E-07 58.7 32.8 314 91-435 9-354 (439)
84 KOG2083 Na+/K+ symporter [Inor 98.0 5.6E-05 1.2E-09 79.3 12.5 223 94-326 39-282 (643)
85 COG1953 FUI1 Cytosine/uracil/t 98.0 0.022 4.7E-07 59.7 29.9 158 85-251 36-215 (497)
86 COG4147 DhlC Predicted symport 97.8 0.02 4.4E-07 59.2 26.9 203 105-316 59-286 (529)
87 COG4145 PanF Na+/panthothenate 97.7 0.063 1.4E-06 54.0 29.7 229 81-316 32-284 (473)
88 KOG1288 Amino acid transporter 97.7 0.0023 5.1E-08 68.3 18.7 212 110-326 89-354 (945)
89 PHA02764 hypothetical protein; 97.7 0.0031 6.7E-08 61.8 17.3 91 87-183 11-103 (399)
90 COG1114 BrnQ Branched-chain am 97.3 0.28 6.1E-06 50.3 29.7 318 91-435 6-353 (431)
91 KOG3832 Predicted amino acid t 97.1 0.0061 1.3E-07 56.1 11.1 104 96-199 18-172 (319)
92 KOG2082 K+/Cl- cotransporter K 96.9 0.16 3.5E-06 55.2 21.0 155 90-249 115-289 (1075)
93 PF02028 BCCT: BCCT family tra 96.8 0.94 2E-05 48.2 29.8 158 87-245 72-258 (485)
94 PRK09928 choline transport pro 96.6 1.6 3.4E-05 48.1 26.1 149 87-240 90-270 (679)
95 COG1966 CstA Carbon starvation 96.3 0.17 3.7E-06 53.5 16.0 98 88-190 50-147 (575)
96 PF02554 CstA: Carbon starvati 96.0 0.64 1.4E-05 47.2 18.1 108 85-197 47-154 (376)
97 TIGR00796 livcs branched-chain 95.3 0.43 9.3E-06 49.2 14.2 69 157-225 255-324 (378)
98 PF05525 Branch_AA_trans: Bran 95.2 0.49 1.1E-05 49.4 14.5 68 158-225 262-330 (427)
99 PRK15015 carbon starvation pro 94.4 1.3 2.9E-05 48.1 15.5 93 94-191 87-179 (701)
100 PRK09950 putative transporter; 94.1 9.8 0.00021 40.8 31.1 153 87-242 81-265 (506)
101 PRK03356 L-carnitine/gamma-but 93.8 11 0.00024 40.3 32.2 152 87-242 83-268 (504)
102 COG1114 BrnQ Branched-chain am 93.6 2.4 5.3E-05 43.7 14.9 80 157-240 263-343 (431)
103 KOG2349 Na+:iodide/myo-inosito 93.3 0.72 1.6E-05 49.7 11.1 143 87-236 44-190 (585)
104 KOG1291 Mn2+ and Fe2+ transpor 93.2 4.3 9.4E-05 42.4 15.9 79 133-214 68-146 (503)
105 PRK15433 branched-chain amino 92.9 3.6 7.9E-05 43.1 15.3 67 159-225 267-333 (439)
106 TIGR00842 bcct choline/carniti 92.8 15 0.00032 38.9 29.0 154 87-243 34-219 (453)
107 COG1292 BetT Choline-glycine b 90.6 27 0.00058 37.4 23.4 24 87-110 85-108 (537)
108 PF00209 SNF: Sodium:neurotran 85.4 58 0.0013 35.1 23.8 55 91-146 6-61 (523)
109 KOG2466 Uridine permease/thiam 66.8 1.4E+02 0.003 31.8 13.4 140 86-236 52-215 (572)
110 PF09716 ETRAMP: Malarial earl 44.7 25 0.00055 27.9 3.1 17 93-109 62-78 (84)
111 TIGR00267 conserved hypothetic 44.6 1.9E+02 0.0042 26.1 9.3 28 90-117 87-114 (169)
112 PF11085 YqhR: Conserved membr 43.7 95 0.0021 28.2 6.8 63 102-182 47-111 (173)
113 PF12666 PrgI: PrgI family pro 37.4 1.4E+02 0.003 23.8 6.5 26 89-114 16-41 (93)
114 COG0586 DedA Uncharacterized m 35.2 3.8E+02 0.0082 25.0 11.3 98 94-196 39-136 (208)
115 COG5264 VTC1 Vacuolar transpor 34.7 1.5E+02 0.0032 25.4 6.2 65 95-170 40-104 (126)
116 COG3493 CitS Na+/citrate sympo 30.5 6.3E+02 0.014 26.2 12.6 27 127-153 212-238 (438)
117 PF03169 OPT: OPT oligopeptide 30.0 7.9E+02 0.017 27.1 14.3 58 106-170 369-428 (624)
118 PF05915 DUF872: Eukaryotic pr 26.8 2.1E+02 0.0046 24.2 6.0 21 92-112 41-61 (115)
119 PF03806 ABG_transport: AbgT p 25.3 7.4E+02 0.016 26.7 11.0 83 135-223 308-396 (502)
120 PF14256 YwiC: YwiC-like prote 24.2 4E+02 0.0086 22.9 7.4 47 391-440 7-53 (129)
121 PRK09488 sdhD succinate dehydr 22.2 3.9E+02 0.0084 22.5 6.8 27 296-322 86-112 (115)
122 PF13347 MFS_2: MFS/sugar tran 21.7 6.5E+02 0.014 25.7 10.1 27 78-104 129-155 (428)
No 1
>PRK10483 tryptophan permease; Provisional
Probab=100.00 E-value=5.4e-53 Score=430.44 Aligned_cols=386 Identities=28% Similarity=0.436 Sum_probs=347.2
Q ss_pred hhccCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHH
Q 044157 84 TLKRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMA 163 (481)
Q Consensus 84 ~~~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a 163 (481)
+.++++++.+++++++.||+||+|||++|.+.++.|+.++.++++++|.++.|++++++|.+.++++ +.++.+++
T Consensus 5 ~~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-----g~~~~tma 79 (414)
T PRK10483 5 TTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-----GSSFDTIT 79 (414)
T ss_pred ccccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHH
Confidence 3467889999999999999999999999999999999999999999999999999999999998873 56899999
Q ss_pred HHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhh-----cCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHH
Q 044157 164 MRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFL-----GIPLWESATLFSLILGGLCYFGSQRFIGAANGALVV 238 (481)
Q Consensus 164 ~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~-----~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~ 238 (481)
|+++||.++.+.++++.+.+|+.++||+.+.|+.+++.+ ++|.+.+.++|+++++.+.+.|. |.+|++|++++.
T Consensus 80 ~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~gt-~~vd~~n~~l~~ 158 (414)
T PRK10483 80 KDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWLST-KAVSRMTAIVLG 158 (414)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887 46889999999999999999998 899999999999
Q ss_pred HHHHHHHHHHHHhcCccccccccccc------ccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHH
Q 044157 239 GIIISFTALVFVASGDLQWNALLKAN------FEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLG 312 (481)
Q Consensus 239 ~~i~~l~iii~~~~~~~~~~~l~~~~------~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v 312 (481)
.|++.++.++....++++.+++.+.+ +..++.++|++++||++|+++|++++++++|+||.+|++.+|+.++++
T Consensus 159 ~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv 238 (414)
T PRK10483 159 AKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALA 238 (414)
T ss_pred HHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHH
Confidence 99999988888888899887775432 234789999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHhccccccc-----cCCCcchhHHHhhh--cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCC-
Q 044157 313 LFLVWNAVILGSISGLEM-----SSGQIVDPIQQLRS--SNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPS- 384 (481)
Q Consensus 313 ~Yll~~~~v~G~~~~~~~-----~~~~~~~~l~~l~~--~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~~~~- 384 (481)
+|++|..+++|.+|.++. .++|++.+++.+.+ .++++..+..+|+.+|+.|||.|+.+++.|.++|.+|+++
T Consensus 239 ~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~ 318 (414)
T PRK10483 239 LYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS 318 (414)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 999999999999997651 34566555566654 3567778899999999999999999999999999999865
Q ss_pred CCCCcchhhHhhHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccCchHHHHHHHH
Q 044157 385 GQSSPQPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGKLTLSLVIG 464 (481)
Q Consensus 385 ~~~r~~~~~l~~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~vpg~~~~~~~~i~ 464 (481)
.++|...++++++||++++.++|+.|..+++++|... .++..++|.+|+|+.|||.+ +.+|++||++....++++
T Consensus 319 ~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~-~il~~ilP~lM~~~~Rk~~~----~~~y~v~Gg~~~l~~~~~ 393 (414)
T PRK10483 319 AMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAA-TIWAAIVPALLARASRKRFG----SPKFRVWGGKPMIVLILL 393 (414)
T ss_pred cccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCC----CCCceecCCHHHHHHHHH
Confidence 3567788899999999999999999999999999885 48899999999999997753 346999999999999999
Q ss_pred HHHHHHHHHHHHHcCC
Q 044157 465 VAGYIILSEILEKFGL 480 (481)
Q Consensus 465 ~~~~~~~~~~~~~~~~ 480 (481)
+++.+++.+++.++|+
T Consensus 394 ~g~~~i~~~i~~~~~~ 409 (414)
T PRK10483 394 FGVGNALVHILSSFNL 409 (414)
T ss_pred HHHHHHHHHHHHHhCc
Confidence 9999999999999884
No 2
>PRK09664 tryptophan permease TnaB; Provisional
Probab=100.00 E-value=2.5e-52 Score=425.12 Aligned_cols=382 Identities=25% Similarity=0.375 Sum_probs=342.9
Q ss_pred CCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHh
Q 044157 88 ESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTI 167 (481)
Q Consensus 88 ~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~ 167 (481)
||.+..+++++++||+||||+|++|.+.++.|+.++.++++++|+++.|++++++|.+.++|+ +.++.+++|+++
T Consensus 7 ~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-----g~~l~tma~~~L 81 (415)
T PRK09664 7 KKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-----GSSFNTITKDLI 81 (415)
T ss_pred hccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHc
Confidence 334788899999999999999999999999999999999999999999999999999999873 668999999999
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc------CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHH
Q 044157 168 GTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG------IPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGII 241 (481)
Q Consensus 168 G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~------lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i 241 (481)
||.++.+.++++.+.+|+.++||+.+.|+.+++.++ +|.+...++|+++++.+.+.|. |.+|++|++++..++
T Consensus 82 G~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~gt-~~vd~~nr~l~~~~i 160 (415)
T PRK09664 82 GNTWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWISS-LAASRITSLFLGLKI 160 (415)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998763 4667777899999999999998 999999999999999
Q ss_pred HHHHHHHHHhcCcccccccccccc--------cchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHHH
Q 044157 242 ISFTALVFVASGDLQWNALLKANF--------EAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGL 313 (481)
Q Consensus 242 ~~l~iii~~~~~~~~~~~l~~~~~--------~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v~ 313 (481)
+.++..+....++++.+++.+.++ ..++.++|++++||++|+++|++++++++|+|+.+|+++.|+.+++++
T Consensus 161 i~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLvi 240 (415)
T PRK09664 161 ISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVI 240 (415)
T ss_pred HHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHH
Confidence 999988888899999888875332 237889999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHhccccccc-----cCCCcchhHHHhhh--cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCC-C
Q 044157 314 FLVWNAVILGSISGLEM-----SSGQIVDPIQQLRS--SNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPS-G 385 (481)
Q Consensus 314 Yll~~~~v~G~~~~~~~-----~~~~~~~~l~~l~~--~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~~~~-~ 385 (481)
|++|..+++|.+|.++. .+.|+++.++++.+ .++++..+..+|+.+|+.|||.|+.+++.|.++|.+++++ +
T Consensus 241 Y~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~~ 320 (415)
T PRK09664 241 YLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNSH 320 (415)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 99999999999997662 23567666655543 4577888999999999999999999999999999998865 3
Q ss_pred CCCcchhhHhhHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccCchHHHHHHHHH
Q 044157 386 QSSPQPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGKLTLSLVIGV 465 (481)
Q Consensus 386 ~~r~~~~~l~~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~vpg~~~~~~~~i~~ 465 (481)
++|...+.++++||++++.++|+.|..+++++|.... ++..++|++|.||.|||.+ +.+||+|||+....+++++
T Consensus 321 ~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~-il~~ilP~lM~~~~Rk~~~----~~~y~v~GG~~~l~~~~~~ 395 (415)
T PRK09664 321 GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCAT-IWAVIIPAVLAIKARKKFP----NQMFTVWGGNLIPAIVILF 395 (415)
T ss_pred ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccC----CCCceeeCCHHHHHHHHHH
Confidence 5688889999999999999999999999999999864 8999999999999998754 3469999999999999999
Q ss_pred HHHHHHHHHHHHcCC
Q 044157 466 AGYIILSEILEKFGL 480 (481)
Q Consensus 466 ~~~~~~~~~~~~~~~ 480 (481)
|+++++.+++.++|+
T Consensus 396 g~~ii~~~~~~~~~~ 410 (415)
T PRK09664 396 GITVILCWFGNVFNV 410 (415)
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999999999885
No 3
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=100.00 E-value=4.5e-49 Score=403.33 Aligned_cols=380 Identities=30% Similarity=0.503 Sum_probs=337.0
Q ss_pred CcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhCh
Q 044157 90 GSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGT 169 (481)
Q Consensus 90 ~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~ 169 (481)
.+.++++++++||+||||+|+||.+.+..|++++.++++++|.++.|++++++|++.+.+ ++.++.+++++.+||
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~-----~~~~~~~~a~~~LG~ 77 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP-----ADTGLGTLAKRYLGR 77 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-----CCCCHHHHHHHHhCh
Confidence 378899999999999999999999999999999999999999999999999999877765 256899999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhh------cCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHH
Q 044157 170 VGVQIASWSYIFIHYTLLVAYVARSSDILTNFL------GIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIIS 243 (481)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~------~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~ 243 (481)
+++++.++.|.+..|..+.+|..+.|+.+++.+ ++|.+.+.+.|+++++.+.+.|. |.++++|++++..+++.
T Consensus 78 ~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~g~-~~v~~~n~~L~~~~ii~ 156 (403)
T PRK15132 78 YGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCVGT-SSVDLFNRFLFSAKIIF 156 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888877665 35677788889888888888888 89999999999999998
Q ss_pred HHHHHHHhcCcccccccccccc--cchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 044157 244 FTALVFVASGDLQWNALLKANF--EAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNAVI 321 (481)
Q Consensus 244 l~iii~~~~~~~~~~~l~~~~~--~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v~Yll~~~~v 321 (481)
++.++....++++.+++.+.++ +.++.++|++++||++|+++|++++++++|+||.+|++.+|..+++++|++|..++
T Consensus 157 ~~~~~~~l~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~ 236 (403)
T PRK15132 157 LVVMLALMMPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLAT 236 (403)
T ss_pred HHHHHHHHHHhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888889999888874333 34889999999999999999999999988999999999999999999999999999
Q ss_pred Hhccccccc-----cCCCcchhHHHhhh--cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCC-CCCCcchhh
Q 044157 322 LGSISGLEM-----SSGQIVDPIQQLRS--SNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPS-GQSSPQPYL 393 (481)
Q Consensus 322 ~G~~~~~~~-----~~~~~~~~l~~l~~--~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~~~~-~~~r~~~~~ 393 (481)
+|.+|.++. .+.+.++.++.+.+ .+++...+...|+.+|+.|||.|+.+++.|.++|.+++++ +++|...++
T Consensus 237 lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~~~~r~~~~~ 316 (403)
T PRK15132 237 LGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNTVGGRLQTGL 316 (403)
T ss_pred HhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccccCCchheh
Confidence 999997752 12334456666654 4678888999999999999999999999999999997653 345777789
Q ss_pred HhhHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccCchHHHHHHHHHHHHHHHHH
Q 044157 394 LTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGKLTLSLVIGVAGYIILSE 473 (481)
Q Consensus 394 l~~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~vpg~~~~~~~~i~~~~~~~~~~ 473 (481)
++++||++++...|+.|..+++++|... .++.+++|.++.||.|++++ +++||+||++...++++++|+.+++.+
T Consensus 317 l~flppli~a~~~P~~F~~al~~aG~~~-ail~~ilP~~m~~~~r~~~~----~~~y~v~gg~~~~~~v~~~G~~~i~~~ 391 (403)
T PRK15132 317 ITFLPPLAFALFYPRGFVMALGYAGVAL-AVLALLLPSLLVWQSRKQNP----QAGYRVKGGRPALALVFLCGIAVIGIQ 391 (403)
T ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCC----CCCccCCCChHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875 58999999999999997643 346999999999999999999999999
Q ss_pred HHHHcCC
Q 044157 474 ILEKFGL 480 (481)
Q Consensus 474 ~~~~~~~ 480 (481)
+..++|+
T Consensus 392 ~~~~~~~ 398 (403)
T PRK15132 392 FLIAAGL 398 (403)
T ss_pred HHHHhCc
Confidence 9999885
No 4
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=100.00 E-value=1.3e-48 Score=401.54 Aligned_cols=373 Identities=40% Similarity=0.731 Sum_probs=334.4
Q ss_pred CCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhC
Q 044157 89 SGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIG 168 (481)
Q Consensus 89 ~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G 168 (481)
+.+.++++++++||+||||||+||.+.+..|+.++.++++++|.++++++++++|++.+.++ +.++.+++++++|
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-----~~~~~~~a~~~lG 76 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-----GSSLTSMAEKYLG 76 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHhC
Confidence 45889999999999999999999999999999999999999999999999999999998873 6789999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc------CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHH
Q 044157 169 TVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG------IPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIII 242 (481)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~------lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~ 242 (481)
|+++.+.++.|.+..|+.+++|..+.++.++++++ .+++....++.++++.+.+.|. |.++|+|++++..+++
T Consensus 77 ~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~g~-~~v~~~n~~lv~~~i~ 155 (394)
T PF03222_consen 77 KKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYFGT-KAVDRINRVLVFGMII 155 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999873 4567778888888888888988 8999999999999999
Q ss_pred HHHHHHHHhcCccccccccc-----ccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHHHHHHH
Q 044157 243 SFTALVFVASGDLQWNALLK-----ANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVW 317 (481)
Q Consensus 243 ~l~iii~~~~~~~~~~~l~~-----~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v~Yll~ 317 (481)
.++.++..+.++++.+++.. .+|..++.++|+.++||++|+++|++++++++|+||.+|++.+|..+++++|++|
T Consensus 156 ~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w 235 (394)
T PF03222_consen 156 SFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLW 235 (394)
T ss_pred HHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888876 4677889999999999999999999999999899999999999999999999999
Q ss_pred HHHHHhccccccc-----cCCCcchhHHHhhh--cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCC-CCCCc
Q 044157 318 NAVILGSISGLEM-----SSGQIVDPIQQLRS--SNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPS-GQSSP 389 (481)
Q Consensus 318 ~~~v~G~~~~~~~-----~~~~~~~~l~~l~~--~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~~~~-~~~r~ 389 (481)
.++++|.+|.++. .+.|.++....+.+ .++++..+..+|+.+|+.|||.++.+++.|.++|.+|+++ +++|.
T Consensus 236 ~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~~~~~r~ 315 (394)
T PF03222_consen 236 VFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKNNSSGRL 315 (394)
T ss_pred HHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccchH
Confidence 9999999997652 23344444444433 3578888999999999999999999999999999998854 34577
Q ss_pred chhhHhhHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccCchHHHHHHHHHHHHH
Q 044157 390 QPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGKLTLSLVIGVAGYI 469 (481)
Q Consensus 390 ~~~~l~~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~vpg~~~~~~~~i~~~~~~ 469 (481)
..+.+++.+|++++...|+.|..+++++| ....++.+++|.+++||.|+++++ ++|++||++.+..++++.++++
T Consensus 316 ~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~----~~~~~~gg~~~l~~~~~~~i~i 390 (394)
T PF03222_consen 316 KTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPK----QPYRVPGGNFTLLLVIIFGILI 390 (394)
T ss_pred HHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCC----CCeEEeCcHHHHHHHHHHHHHH
Confidence 77889999999999999999999999999 666799999999999999988764 4599999999999999999888
Q ss_pred HHH
Q 044157 470 ILS 472 (481)
Q Consensus 470 ~~~ 472 (481)
++.
T Consensus 391 ii~ 393 (394)
T PF03222_consen 391 IIC 393 (394)
T ss_pred HHh
Confidence 764
No 5
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=100.00 E-value=1.3e-41 Score=350.55 Aligned_cols=360 Identities=30% Similarity=0.554 Sum_probs=306.5
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChhhhHH
Q 044157 95 AIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQI 174 (481)
Q Consensus 95 a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~~~~~ 174 (481)
++++++|++||+|+|++|..+++.|+.+++++++++|+++.+++++++|++.++|+ .+++++++++.+||+++++
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~-----~~~~~~~~~~~~G~~~g~~ 76 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG-----GASFNTIAKDLLGKTGNII 76 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHhCHHHHHH
Confidence 45678999999999999999999999899999999999999999999999999873 5689999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHhhhhhc------CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHHHHHHH
Q 044157 175 ASWSYIFIHYTLLVAYVARSSDILTNFLG------IPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTALV 248 (481)
Q Consensus 175 ~~~~~~~~~~~~~~ay~~~~g~~l~~~~~------lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~l~iii 248 (481)
.+|.+++.+|..+++|....+++++++++ .|.+...+.+++++..+++.|. |..+++|.+++..++..+++++
T Consensus 77 ~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~G~-~~~~~v~~i~~~~~l~~l~~~i 155 (381)
T TIGR00837 77 AGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSFVWLST-SAVDRITRVLIFGKIIAFALVF 155 (381)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888887663 4556666677777778888898 8999999999999998888888
Q ss_pred HHhcCcccccccccc-----cccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044157 249 FVASGDLQWNALLKA-----NFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNAVILG 323 (481)
Q Consensus 249 ~~~~~~~~~~~l~~~-----~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v~Yll~~~~v~G 323 (481)
+.+.++.+.+++.+. ++.++..++++.+++|++|++++.+.+++++|+||++|++.+|..+++++|++++.+..|
T Consensus 156 i~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g 235 (381)
T TIGR00837 156 SGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMG 235 (381)
T ss_pred HHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 777888777776542 355677899999999999998999999997789999999999999999999999999999
Q ss_pred cccccccc-----CCCcchhHHHhhh--cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCC-CCCcchhhHh
Q 044157 324 SISGLEMS-----SGQIVDPIQQLRS--SNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPSG-QSSPQPYLLT 395 (481)
Q Consensus 324 ~~~~~~~~-----~~~~~~~l~~l~~--~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~~~~~-~~r~~~~~l~ 395 (481)
.+|+++.. .++.++.+..+.. .+++...++..++.+++.+|++++.+++.|.++|.++++++ ++|.....++
T Consensus 236 ~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~~~~~~~~~~~ 315 (381)
T TIGR00837 236 NLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSKKGRFKTGLLT 315 (381)
T ss_pred CCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCchhhhhh
Confidence 99987732 1233333333332 24567889999999999999999999999999999987543 3466667888
Q ss_pred hHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccCchHHHHHHHHH
Q 044157 396 LIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGKLTLSLVIGV 465 (481)
Q Consensus 396 ~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~vpg~~~~~~~~i~~ 465 (481)
.+++++++.+.|+.|...++++| +...++.+++|++++|+.|||+++ .+||+|+++..+.+.++.
T Consensus 316 ~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~~~----~~~~~~~~~~~~~~~~~~ 380 (381)
T TIGR00837 316 FLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKFPN----AGYRVWGGNKLLLLVLLF 380 (381)
T ss_pred HHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCC----CCccccCChHHHHHHHHh
Confidence 89999999999999989999999 556689999999999999987664 489999999998887654
No 6
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-37 Score=321.02 Aligned_cols=387 Identities=29% Similarity=0.467 Sum_probs=328.6
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMR 165 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~ 165 (481)
.+.+.+..+++++++||+||||+|++|.+++..|+++++++++++|.+++++++++.|+..+.|++ ..++.+++++
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~----~~~~~~~~~~ 80 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG----KASITSLVED 80 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----cccHHHHHHH
Confidence 345568999999999999999999999999999999999999999999999999999999998841 2489999999
Q ss_pred HhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-------CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHH
Q 044157 166 TIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-------IPLWESATLFSLILGGLCYFGSQRFIGAANGALVV 238 (481)
Q Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-------lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~ 238 (481)
.+||+++.+.++.+.+.+|+.+.+|.++.||.++++++ .++....++++.++..+.+.+. +..++.+.++..
T Consensus 81 ~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~-~~~lk~ts~l~~ 159 (415)
T COG0814 81 YLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGT-LAVLKITSLLVF 159 (415)
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhch-hHHHHHHHHHHH
Confidence 99999999999999999999999999999999998773 4567777788777777888887 899999999999
Q ss_pred HHHHHHHHHHHHhcCccccccccc------ccccchhhhhhHHhhhccCcchHHHhHHhhccChhh-HHHHHHHHHHHHH
Q 044157 239 GIIISFTALVFVASGDLQWNALLK------ANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSK-VRTAIVVGTSIPL 311 (481)
Q Consensus 239 ~~i~~l~iii~~~~~~~~~~~l~~------~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~-~~kai~~g~~i~~ 311 (481)
.+++.++++.....++++.+++.. ..|..++.++|+++|||+||.++|++.+||++|.++ .+|++..+..+.+
T Consensus 160 ~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~ 239 (415)
T COG0814 160 GKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIAL 239 (415)
T ss_pred HHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 999999999888889888776643 346678999999999999999999999999877766 9999999999999
Q ss_pred HHHHHHHHHHHhccccccc-----cCCCcchhHHHhhh--cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCC-
Q 044157 312 GLFLVWNAVILGSISGLEM-----SSGQIVDPIQQLRS--SNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLP- 383 (481)
Q Consensus 312 v~Yll~~~~v~G~~~~~~~-----~~~~~~~~l~~l~~--~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~~~- 383 (481)
++|+.|.+..++.++..+. ..++....++.... ..+......+.++.+|+.+||.++.++..|..+|.++++
T Consensus 240 vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~ 319 (415)
T COG0814 240 VLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSN 319 (415)
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhcc
Confidence 9999999999999987641 22333333433332 346678899999999999999999999999999988863
Q ss_pred CCCCCcchhhHhhHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccCch-HHHHHH
Q 044157 384 SGQSSPQPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGK-LTLSLV 462 (481)
Q Consensus 384 ~~~~r~~~~~l~~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~vpg~~-~~~~~~ 462 (481)
++.+|...+..++.++++++++.|..|....+.+|.+...+...+.|.++.++-|+...+ ...+|..++. ...+++
T Consensus 320 ~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~---~~~~~~~~g~~~~~~~v 396 (415)
T COG0814 320 SKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYK---LPALKVYGGNFLLLLLV 396 (415)
T ss_pred CcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCceeecCCCchhHHHH
Confidence 234466677888899999999999889999999997777788899999999887765522 3456777664 488888
Q ss_pred HHHHHHHHHHHHHHHcCC
Q 044157 463 IGVAGYIILSEILEKFGL 480 (481)
Q Consensus 463 i~~~~~~~~~~~~~~~~~ 480 (481)
++.|+.++++++...+++
T Consensus 397 ~~~Gi~~~~~~~~~~~~l 414 (415)
T COG0814 397 LLFGILVILSPFLATFGL 414 (415)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 899999999999987764
No 7
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=100.00 E-value=7.2e-35 Score=297.29 Aligned_cols=369 Identities=17% Similarity=0.226 Sum_probs=295.5
Q ss_pred cHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChh
Q 044157 91 SLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTV 170 (481)
Q Consensus 91 s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~ 170 (481)
.....+..+.||+||||+|+||...+..|+++++++++++|.+++++++.++|.....++ ++.++.+++++.|||.
T Consensus 20 ~d~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~----~~~~i~~v~~~~lG~~ 95 (443)
T PRK13629 20 SDTTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN----PSGNITETVEEHFGKT 95 (443)
T ss_pred ccchHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----CCCCHHHHHHHHcChh
Confidence 445667999999999999999999999999999999999999999999999999987742 3678999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHhHhhhh----hc---CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHH
Q 044157 171 GVQIASWSYIFIHYTLLVAYVARSSDILTNF----LG---IPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIIS 243 (481)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~----~~---lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~ 243 (481)
++.+.++.|++..|..+.+|.....+.++++ ++ .|.+...++++++++.+.+.|. |.++|++.+++..+++.
T Consensus 96 g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~~G~-~~v~kv~~~Lv~~~i~~ 174 (443)
T PRK13629 96 GGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIWFGK-DLMVKVMSYLVWPFIAS 174 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777765 33 4677888888888888899998 99999999999999999
Q ss_pred HHHHHHHhcCcccccccccccc-------c-----chhhhhhHHhhhccCcchHHHhHHh----h----ccC--hhhHHH
Q 044157 244 FTALVFVASGDLQWNALLKANF-------E-----AVPMSIPIIALSFVYQNVVPVLCTN----L----EGN--LSKVRT 301 (481)
Q Consensus 244 l~iii~~~~~~~~~~~l~~~~~-------~-----~i~~ai~vi~~af~~~~~v~~i~~~----~----~~~--~k~~~k 301 (481)
++.+.....++++.+++...++ . .++.++|++++||++|+++|++..+ + ++| +||.+|
T Consensus 175 l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~r 254 (443)
T PRK13629 175 LVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQ 254 (443)
T ss_pred HHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHH
Confidence 9999999999999888763222 1 3789999999999999999999877 5 235 799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccc-----cCCC-cchhHHHhhh--cC-----CcHHHHHHHHHHHHHHHHHHHH
Q 044157 302 AIVVGTSIPLGLFLVWNAVILGSISGLEM-----SSGQ-IVDPIQQLRS--SN-----GAVGPIIDVFSFLAIATSYIGF 368 (481)
Q Consensus 302 ai~~g~~i~~v~Yll~~~~v~G~~~~~~~-----~~~~-~~~~l~~l~~--~~-----~~~~~iv~~~~~~ai~ts~~~~ 368 (481)
++..|..+.+++|++|.+++.|.+|.++. .+.+ ++..++.+.+ .. +++..+..+++.+|+.|||.|+
T Consensus 255 ii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv 334 (443)
T PRK13629 255 IISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGH 334 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998772 1233 2344444443 12 5578889999999999999999
Q ss_pred HHhHHHHHHhhcC----CC-CC-CC-Cc---chhhHhhHHHHHHHHhCchHHHHHhh-hhHHHHHHHHHHHHHHHHHHHh
Q 044157 369 ILGLSDFLADLLK----LP-SG-QS-SP---QPYLLTLIPPLVLSLLDPEIFFKALD-FAGTYGVLVLFGILPAVMSWSD 437 (481)
Q Consensus 369 ~l~l~~~l~~~~~----~~-~~-~~-r~---~~~~l~~~~~llia~~~P~~f~~~l~-~~G~~~~~~l~~ilP~l~~~~~ 437 (481)
.+|++|.++.... +. ++ .+ |. ...+..++.+++.+...|++ ..+++ +.|-+.+ ++.+++|.+..+|.
T Consensus 335 ~LGl~E~l~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~i-l~~i~~~~gPiia-~il~l~P~y~i~kv 412 (443)
T PRK13629 335 YLGTLEGLNGLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNI-LDLIEAMGAPIIA-SLLCLLPMYAIRKA 412 (443)
T ss_pred HHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccH-HHHHHHhhhHHHH-HHHHHHHHHHHHcc
Confidence 9999999877652 11 11 11 11 12345567789999999984 55666 4455554 77899999887765
Q ss_pred hccCCCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHH
Q 044157 438 RYSSSSPSMTIPRIVPGGKLTLSLVIGVAGYIILSEILE 476 (481)
Q Consensus 438 r~~~~~~~~~~~~~vpg~~~~~~~~i~~~~~~~~~~~~~ 476 (481)
..-+ +|| ++...+++++.|++.+.+.+++
T Consensus 413 p~l~-------~yr---~~~~n~fv~~~Gl~~i~~~~~~ 441 (443)
T PRK13629 413 PSLA-------KYR---GRLDNVFVTVIGLLTILNIVYK 441 (443)
T ss_pred HHHH-------HhC---CCchhHHHHHHHHHHHHHHHHh
Confidence 4322 255 3335788888888877777665
No 8
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-34 Score=294.45 Aligned_cols=346 Identities=17% Similarity=0.198 Sum_probs=267.8
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMR 165 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~ 165 (481)
.+|++++++++++.++.++|+|+|++|+++++.||++|++++++.+++++||+.++.++...++...|++.++|.|++++
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~ 113 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQA 113 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHH
Confidence 36779999999999999999999999999999999999999999999999999999999998887667777889999999
Q ss_pred HhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc---Cc-----hHHHHHHHHHHHHHHHhhChhhHHHhHHHHHH
Q 044157 166 TIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG---IP-----LWESATLFSLILGGLCYFGSQRFIGAANGALV 237 (481)
Q Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~---lp-----~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~ 237 (481)
+||++++.++++.+.+.+|+.++.|++..|+.++.+++ .+ .....+++.++..+..+++.......++.+..
T Consensus 114 afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~a 193 (437)
T KOG1303|consen 114 AFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGA 193 (437)
T ss_pred HhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHHHHHH
Confidence 99999999999999999999999999999999998873 11 12334555555555555543233333333332
Q ss_pred HHHHHHHHHHHHHhcCc-ccc----cccccccccch-hhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHH
Q 044157 238 VGIIISFTALVFVASGD-LQW----NALLKANFEAV-PMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPL 311 (481)
Q Consensus 238 ~~~i~~l~iii~~~~~~-~~~----~~l~~~~~~~i-~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~ 311 (481)
..-+....+.+..+..+ .+. ......+..+. +++++++.|+|++|.++|+++++|+ +|++++|++.+++.+++
T Consensus 194 vmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk-~p~~f~~~~lis~~~~~ 272 (437)
T KOG1303|consen 194 VMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMK-SPPKFKKALLISYIIVT 272 (437)
T ss_pred HHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcC-CchhhhhHHHHHHHHHH
Confidence 22222112222222221 111 11111111122 6999999999999999999999996 56679999999999999
Q ss_pred HHHHHHHHHHHhccccccccCCCc-chhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCC-----
Q 044157 312 GLFLVWNAVILGSISGLEMSSGQI-VDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPSG----- 385 (481)
Q Consensus 312 v~Yll~~~~v~G~~~~~~~~~~~~-~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~~~~~----- 385 (481)
.+|+. +++.||..+++ ++ ++.+..+. ...|+....++...++.++++..+..++.+.+|+..+.+++
T Consensus 273 ~~y~~--vai~GY~aFG~----~~~~~il~s~~-~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~ 345 (437)
T KOG1303|consen 273 FLYFP--VAIIGYWAFGD----SVPDNILLSLQ-PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKR 345 (437)
T ss_pred HHHHH--HHHhhhhhhcc----ccchhhhhccc-CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcccccc
Confidence 99987 78889887753 33 34444553 24677788889999999999999999999999988775433
Q ss_pred C--CCcchhhHhhHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 044157 386 Q--SSPQPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYS 440 (481)
Q Consensus 386 ~--~r~~~~~l~~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~ 440 (481)
. .|...|...++..+++|..+|+ |+++++++|++....+.+++|+++|++.||.
T Consensus 346 ~~~~R~~~Rt~~v~~~~~vA~~~Pf-Fg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~ 401 (437)
T KOG1303|consen 346 SLVLRLLVRTFFVAVTTFVALSFPF-FGDLLSLVGAFLFWPLTFILPCLMYLLIKKP 401 (437)
T ss_pred ccceeeehhhHHHHHHHHHHHhccc-cHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 1 3556677888899999999998 9999999999988899999999999988543
No 9
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=1.3e-31 Score=282.23 Aligned_cols=336 Identities=16% Similarity=0.182 Sum_probs=242.7
Q ss_pred cCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHH
Q 044157 87 RESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRT 166 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~ 166 (481)
-+++|..+++++++++++|+|+|++|+++++.||+.|++++++++.++.|+..++.+++.+.+ ..+|+|+++++
T Consensus 57 ~~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~------~~sY~~la~~~ 130 (467)
T PTZ00206 57 IPPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTN------IRTYEGVARVL 130 (467)
T ss_pred cCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------CCCHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999998887643 46999999999
Q ss_pred hChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc---CchHH---------HHHHHHHHHHHHHhhChhhHHHhHHH
Q 044157 167 IGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG---IPLWE---------SATLFSLILGGLCYFGSQRFIGAANG 234 (481)
Q Consensus 167 ~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~---lp~~~---------~~i~~~li~~~i~~lg~~k~~~~~~~ 234 (481)
+||+++.++++...+.+++.|++|++..||.++.++. .+.+. ..+.+.++..++.+. |.++++..
T Consensus 131 ~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~---r~i~~L~~ 207 (467)
T PTZ00206 131 LGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIP---RHIDSLRY 207 (467)
T ss_pred hCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccc---cchHHHHH
Confidence 9999999999999999999999999999999988773 22211 112222233344433 45555555
Q ss_pred HHHHHHHHHHH---HHHHHhcCccccccc-------------cccc-ccchhhhhhHHhhhccCcchHHHhHHhhccC-h
Q 044157 235 ALVVGIIISFT---ALVFVASGDLQWNAL-------------LKAN-FEAVPMSIPIIALSFVYQNVVPVLCTNLEGN-L 296 (481)
Q Consensus 235 i~~~~~i~~l~---iii~~~~~~~~~~~l-------------~~~~-~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~-~ 296 (481)
+..++.+..+. ++++....+..+++. ...+ ...++.+++++.|||.+|.++++++++|+++ +
T Consensus 208 ~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~ 287 (467)
T PTZ00206 208 VSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSV 287 (467)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccch
Confidence 54444332221 111111111101100 0011 1246788999999999999999999999743 7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 044157 297 SKVRTAIVVGTSIPLGLFLVWNAVILGSISGLEMSSGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFL 376 (481)
Q Consensus 297 k~~~kai~~g~~i~~v~Yll~~~~v~G~~~~~~~~~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l 376 (481)
+++.++...++.++.++|.+ ++++||+.+++..+ .+++.++...++....+..+...+.+..+|....++..+.+
T Consensus 288 ~~~~~v~~~s~~i~~~lY~~--~G~~GYl~fG~~v~---~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i 362 (467)
T PTZ00206 288 GKFVLASTIAMGMCFTMYVL--TAFFGYMDFGRNVT---GSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNAL 362 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHH--HHHhhhhccccccc---hHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 89999999999999999987 77889888753211 35555553212333344445555667788988888887777
Q ss_pred HhhcCCCCC----CCCcchhhHhhHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 044157 377 ADLLKLPSG----QSSPQPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSD 437 (481)
Q Consensus 377 ~~~~~~~~~----~~r~~~~~l~~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~ 437 (481)
++.+..+.+ +++...+....+.++++|+++|+ +..+++++|++++..+.+++|++++++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~iAi~vP~-l~~vl~lvGa~~~~~l~fi~P~lf~l~~ 426 (467)
T PTZ00206 363 YDVIGWDARKVAFWKHCIAVVTLSVVMLLCGLFIPK-INTVLGFAGSISGGLLGFILPALLFMYS 426 (467)
T ss_pred HHHhCCCcccCchhhHHHHHHHHHHHHHHHHhccCC-HHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 776543221 12222223334566889999998 9999999999999999999999998874
No 10
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=100.00 E-value=5.2e-31 Score=270.70 Aligned_cols=340 Identities=16% Similarity=0.249 Sum_probs=271.5
Q ss_pred cHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChh
Q 044157 91 SLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTV 170 (481)
Q Consensus 91 s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~ 170 (481)
...+.++.++||+||+|+|.+|...++.||++.++..+++|.++++.++.++|.....+. ++.++.+++++.|||+
T Consensus 4 ~d~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~----p~~~i~~~~~~~fGk~ 79 (397)
T TIGR00814 4 TDTGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKN----PCEDITEVVEEHFGKN 79 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----CCCCHHHHHHHHcCHH
Confidence 456788999999999999999999999999999999999999999999999999776553 2568999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhh----c--CchH-HHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHH
Q 044157 171 GVQIASWSYIFIHYTLLVAYVARSSDILTNFL----G--IPLW-ESATLFSLILGGLCYFGSQRFIGAANGALVVGIIIS 243 (481)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~----~--lp~~-~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~ 243 (481)
++.+.++.|++..+..+.+|..+.++.+++++ + .|.+ ...+++.+++..++..|. |.++|++.+++..+++.
T Consensus 80 ~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~-~~i~r~~~il~~~~ii~ 158 (397)
T TIGR00814 80 WGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGE-KLLFKIMGPLVFPLVLI 158 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988888776655 2 3333 445555555566777787 89999999999999888
Q ss_pred HHHHHHHhcCcccccccccc-----cccchhhhhhHHhhhccCcchHHHhH----Hhhc-cC--hhhHHHHHHHHHHHHH
Q 044157 244 FTALVFVASGDLQWNALLKA-----NFEAVPMSIPIIALSFVYQNVVPVLC----TNLE-GN--LSKVRTAIVVGTSIPL 311 (481)
Q Consensus 244 l~iii~~~~~~~~~~~l~~~-----~~~~i~~ai~vi~~af~~~~~v~~i~----~~~~-~~--~k~~~kai~~g~~i~~ 311 (481)
++.+.....+++|.+++... .+..++.++|+.++||++|+++|++. ++.+ +| +||.+|++..|..+.+
T Consensus 159 l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~ 238 (397)
T TIGR00814 159 LVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILV 238 (397)
T ss_pred HHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHH
Confidence 88888888899998887532 23458899999999999999999987 2232 13 7899999999999999
Q ss_pred HHHHHHHHHHHhccccccc---cCCCcchhHHHhhh--cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC----C
Q 044157 312 GLFLVWNAVILGSISGLEM---SSGQIVDPIQQLRS--SNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLK----L 382 (481)
Q Consensus 312 v~Yll~~~~v~G~~~~~~~---~~~~~~~~l~~l~~--~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~----~ 382 (481)
++|++|.+++.+.++.++. .+++.+ .++.+.+ +++++..+...++.+|+.+||.++.++++|.+++.+. .
T Consensus 239 ~~y~~~~~s~~~~l~~~~~~~a~~~nis-~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~ 317 (397)
T TIGR00814 239 ATVMFFVFSCVLSLSPAEAVAAKEQNIS-ILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKM 317 (397)
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHcCcH-HHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc
Confidence 9999999999999998763 234443 3665554 4678888999999999999999999999999998772 1
Q ss_pred CCC-CC-Cc---chhhHhhHHHHHHHHhCchHHHHHhh-hhHHHHHHHHHHHHHHHHHHHhh
Q 044157 383 PSG-QS-SP---QPYLLTLIPPLVLSLLDPEIFFKALD-FAGTYGVLVLFGILPAVMSWSDR 438 (481)
Q Consensus 383 ~~~-~~-r~---~~~~l~~~~~llia~~~P~~f~~~l~-~~G~~~~~~l~~ilP~l~~~~~r 438 (481)
+++ .+ |. ......++.++..+...|++ ...++ +.|-+.+ ++.+++|.+..+|..
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~i-l~~i~~~~gp~~a-~i~~~~p~~~~~~v~ 377 (397)
T TIGR00814 318 KGKKINIRKLNRAIAIFIVLTTWIVAYINPSI-LSFIEALGGPIIA-MILFLMPMYAIYKVP 377 (397)
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHhCccH-HHHHHHhhHHHHH-HHHHHHHHHHHHccH
Confidence 111 11 21 12345567789999999984 55566 5555554 778999998887653
No 11
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.97 E-value=1.5e-27 Score=250.62 Aligned_cols=378 Identities=13% Similarity=0.141 Sum_probs=267.9
Q ss_pred hccCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHH
Q 044157 85 LKRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAM 164 (481)
Q Consensus 85 ~~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~ 164 (481)
+.+|+.|.++..++.+|+++|+.....+..++..|+....+..++++++....+++++|++.++|+ .++.+.+++
T Consensus 4 ~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-----~Gg~y~~~~ 78 (442)
T TIGR00908 4 QLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-----AGGGYGFAR 78 (442)
T ss_pred hhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCHHHHHH
Confidence 356789999999999999998444455777888888655666777777888889999999999994 457899999
Q ss_pred HHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHH
Q 044157 165 RTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-IPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIIS 243 (481)
Q Consensus 165 ~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~ 243 (481)
+.+||..+++.+|.+++.......++...++++++.+++ .+.+.....+.+++..++++|. |..++++.+.+..+++.
T Consensus 79 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~~~~~~~~~~~~~~~ln~~g~-~~~~~i~~~~~~~~~~~ 157 (442)
T TIGR00908 79 RAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGPGWLAALVFYIVFIGINILGV-GEAAKLEFVVTAVAIIA 157 (442)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHHH
Confidence 999999999999998876666667777788888888775 4556666666666778899998 89999999988877766
Q ss_pred HHHHHHHhcCccccccccc-----------ccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHH
Q 044157 244 FTALVFVASGDLQWNALLK-----------ANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLG 312 (481)
Q Consensus 244 l~iii~~~~~~~~~~~l~~-----------~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v 312 (481)
+++++.....+.+..++.+ .++.+++.+++..+++|.+.+..+.+.+|++|++|++||++..+..++.+
T Consensus 158 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~ 237 (442)
T TIGR00908 158 LGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLA 237 (442)
T ss_pred HHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHH
Confidence 5555444444444333221 11234567777788999999999999999987889999999999999999
Q ss_pred HHHHHHHHHHhcccccccc--CCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC---------
Q 044157 313 LFLVWNAVILGSISGLEMS--SGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLK--------- 381 (481)
Q Consensus 313 ~Yll~~~~v~G~~~~~~~~--~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~--------- 381 (481)
+|+.......|..+.++.. +++..+..+...+..++...++.+...++.+++.++..++..|.+...-|
T Consensus 238 ~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~ardg~lP~~~~ 317 (442)
T TIGR00908 238 LAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFALSRAGYLPESLS 317 (442)
T ss_pred HHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHH
Confidence 9988777777766654421 22334444443322234555666666677777888887777776543322
Q ss_pred CCCCCCCcchhhHhh--HHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccCchHHH
Q 044157 382 LPSGQSSPQPYLLTL--IPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGKLTL 459 (481)
Q Consensus 382 ~~~~~~r~~~~~l~~--~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~vpg~~~~~ 459 (481)
+.| +++.+...+.+ +..+++.... +...+.++.+ +.. .+.++++++.+++.|+++|+. +||||+|++++.+
T Consensus 318 ~~~-~~~~P~~Ail~~~~i~~~~~l~~--~~~~l~~~~~-~~~-~~~y~~~~~a~i~lr~~~p~~--~rp~~~p~~~~~~ 390 (442)
T TIGR00908 318 KVN-RKKAPVLAIVVPGVIGFGLSLTG--QTALIILVSV-FGA-IISYVLSMAAHFTLRIRRPDM--ERPYRTPGGILTP 390 (442)
T ss_pred HhC-CCCCcHHHHHHHHHHHHHHHHhc--cHHHHHHHHH-HHH-HHHHHHHHHHHHHHHhcCCCC--CCCccCCCcchHH
Confidence 112 23344433322 2233333322 2344444333 332 456777888889999988875 8999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 044157 460 SLVIGVAGYIILSEIL 475 (481)
Q Consensus 460 ~~~i~~~~~~~~~~~~ 475 (481)
++.++...+.++..++
T Consensus 391 ~l~~~~~~~~l~~~~~ 406 (442)
T TIGR00908 391 GVALVLACVALVTGFY 406 (442)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9998888777776554
No 12
>PLN03074 auxin influx permease; Provisional
Probab=99.97 E-value=5e-28 Score=254.22 Aligned_cols=346 Identities=12% Similarity=0.003 Sum_probs=241.9
Q ss_pred cCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCC-------CCH
Q 044157 87 RESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGG-------VSL 159 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~-------~s~ 159 (481)
..+++..++.++.+...+|.|+|+||+++++.||++|++.+++.++++.|++.++.++..+++++++++. .+|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~ 122 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQW 122 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHH
Confidence 4457888999999999999999999999999999999999999999999999999887655433221111 256
Q ss_pred HHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHH
Q 044157 160 VSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-IPLWESATLFSLILGGLCYFGSQRFIGAANGALVV 238 (481)
Q Consensus 160 ~~~a~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~ 238 (481)
.|+++..+||+++.+......+.+++.++.|++..++.+..+.. ++...+.+++.++..++.++...|.+..++.+...
T Consensus 123 ~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~ 202 (473)
T PLN03074 123 FEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLL 202 (473)
T ss_pred HHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 88888899999999888888888888889999887776655421 34344444554455555555444555555444433
Q ss_pred HHHHHHHHHHHHhcCcccccccc---cccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHHHHH
Q 044157 239 GIIISFTALVFVASGDLQWNALL---KANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFL 315 (481)
Q Consensus 239 ~~i~~l~iii~~~~~~~~~~~l~---~~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v~Yl 315 (481)
..+.....+++....+.+.+... +.++...+.+.++++|+|++|.++|+++++|+ +|+|++++..++....+..|+
T Consensus 203 ~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~-~P~~F~~~~~l~~~~v~~~y~ 281 (473)
T PLN03074 203 MTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMW-KPQKFKYIYLAATLYVLTLTL 281 (473)
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhcc-ChhcccchHHHHHHHHHHHHH
Confidence 22221111221121111111111 12333466777788999999999999999995 789999998888888888887
Q ss_pred HHHHHHHhccccccccCCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCC---Ccchh
Q 044157 316 VWNAVILGSISGLEMSSGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPSGQS---SPQPY 392 (481)
Q Consensus 316 l~~~~v~G~~~~~~~~~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~~~~~~~---r~~~~ 392 (481)
. .++.||+.+++...+ ....+..+. .+....++.++..+.++.++.....++.+..|+..+.++.++ |...|
T Consensus 282 ~--~~~~gY~~fG~~~~~-~s~~l~~lp--~~~~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~~r~~~R 356 (473)
T PLN03074 282 P--SAAAVYWAFGDELLT-HSNAFSLLP--RSGWRDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSICLRALAR 356 (473)
T ss_pred H--HHHeeeeeechhhhh-chhHHhcCC--CchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccccHHHHHHHH
Confidence 6 567778776531100 011122221 122456778888888888887777788888777655432222 33456
Q ss_pred hHhhHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 044157 393 LLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRY 439 (481)
Q Consensus 393 ~l~~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~ 439 (481)
...+++++++|..+|+ |+.+++++|+++.+.+.+++|++++++.++
T Consensus 357 ~~lv~~~~~iA~~IP~-fg~llsLvGs~~~s~l~~i~P~l~~l~~~~ 402 (473)
T PLN03074 357 LPVVVPIWFLAIIFPF-FGPINSAVGALLVSFTVYIIPSLAHMLTYR 402 (473)
T ss_pred HHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 7777889999999998 999999999999999999999999997543
No 13
>PRK15049 L-asparagine permease; Provisional
Probab=99.97 E-value=4e-27 Score=250.48 Aligned_cols=378 Identities=15% Similarity=0.149 Sum_probs=262.3
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPA-VTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAM 164 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~-~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~ 164 (481)
.+|+++.++.+++.+|.+||+|++.+|. +++.+|- .+++..++++++.+..+..++|++.++|. .++.+.+++
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~P~-----aGg~y~y~~ 99 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHRPS-----SGSFVSYAR 99 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHH
Confidence 4566999999999999999999999988 4556664 56778888999999999999999999984 458999999
Q ss_pred HHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhh--h-cCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHH
Q 044157 165 RTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNF--L-GIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGII 241 (481)
Q Consensus 165 ~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~--~-~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i 241 (481)
+.+|++.+++++|.+++.......+-..+.+.++..+ + +.|.|.....+.+++..+|++|. |..+++|.+++..++
T Consensus 100 ~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~iN~~gv-k~~~~i~~~~~~iki 178 (499)
T PRK15049 100 EFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQWVFALAALTIVGTMNMIGV-KWFAEMEFWFALIKV 178 (499)
T ss_pred HHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999998764333222223344444433 2 35667766666677788999998 899999999998876
Q ss_pred HHHHHHHHHhc-----Ccc---ccccc---c------cccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHH
Q 044157 242 ISFTALVFVAS-----GDL---QWNAL---L------KANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIV 304 (481)
Q Consensus 242 ~~l~iii~~~~-----~~~---~~~~l---~------~~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~ 304 (481)
..++.+++.+. .+. +..++ . +.++.+++.++...+|+|.+.+.+..+.+|.+||+|++||++.
T Consensus 179 ~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~iPrAi~ 258 (499)
T PRK15049 179 LAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMVPKAIN 258 (499)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHHHHHHH
Confidence 65555433221 111 01111 1 1112223445556789999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccc--CCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC-
Q 044157 305 VGTSIPLGLFLVWNAVILGSISGLEMS--SGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLK- 381 (481)
Q Consensus 305 ~g~~i~~v~Yll~~~~v~G~~~~~~~~--~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~- 381 (481)
.++....++|+....+....+|.++.. +++..+.++.. ..++...++.++.+++.+++.++..++..|.+..+-+
T Consensus 259 ~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~--g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~Ard 336 (499)
T PRK15049 259 SVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKL--GVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMAMG 336 (499)
T ss_pred HHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHc--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999888888888876532 12222333222 2356667888888888888888888888776643322
Q ss_pred --------CCCCCCCcchhhHhh--HHH---HHHHHhCch-HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCC-CC
Q 044157 382 --------LPSGQSSPQPYLLTL--IPP---LVLSLLDPE-IFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSP-SM 446 (481)
Q Consensus 382 --------~~~~~~r~~~~~l~~--~~~---llia~~~P~-~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~-~~ 446 (481)
+.+ +++.+...+.+ +.. .++....|+ .|..++++.+... .+.+.++++.+++.||+.++. .+
T Consensus 337 g~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~--li~y~~~~~~~l~~R~~~~~~~~~ 413 (499)
T PRK15049 337 GSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGI--IASWAFIIVCQMRLRKAIKEGKAA 413 (499)
T ss_pred CCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhcCCC
Confidence 112 22334332221 111 123334453 3666666665554 467778888888888764432 23
Q ss_pred CCCccccCchHHHHHHHHHHHHHHHHHHH
Q 044157 447 TIPRIVPGGKLTLSLVIGVAGYIILSEIL 475 (481)
Q Consensus 447 ~~~~~vpg~~~~~~~~i~~~~~~~~~~~~ 475 (481)
++|||+|++|+.+++.++..+++++...+
T Consensus 414 ~~pf~~~~~p~~~~~~l~~~~~~~~~~~~ 442 (499)
T PRK15049 414 DVSFKLPGAPFTSWLTLLFLLSVLVLMAF 442 (499)
T ss_pred CCCCcccCccHHHHHHHHHHHHHHHHHHH
Confidence 67999999999999998877776665444
No 14
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.97 E-value=1.8e-26 Score=244.26 Aligned_cols=377 Identities=14% Similarity=0.144 Sum_probs=256.8
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPAVT-QEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAM 164 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~~~-a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~ 164 (481)
.+|+++.++++++.+|++||+|++.+|... +.+|-.+.++..++++++.+..+.+++|++.++|+ .++++.+++
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~-----aGG~y~y~~ 86 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE-----TGAFHVYAA 86 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCHHHHHH
Confidence 367799999999999999999999998865 56675456777888999999999999999999995 347999999
Q ss_pred HHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHH
Q 044157 165 RTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-IPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIIS 243 (481)
Q Consensus 165 ~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~ 243 (481)
+.+||..+++++|.+++.....+.+...+.+.+++.+++ .|.|...+.+.+++..++++|. |..++++.+.+..+++.
T Consensus 87 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~in~~gv-k~~~~~~~~~~~~ki~~ 165 (471)
T PRK11387 87 RYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQVPVWPWCLLFCALIFGLNVVST-RFFAEGEFWFSLIKVVT 165 (471)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH
Confidence 999999999999998876554443334444445554443 4555555555566778899998 89999998888877776
Q ss_pred HHHHHHHhc-------C--ccc----ccccccccc-----cchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHH
Q 044157 244 FTALVFVAS-------G--DLQ----WNALLKANF-----EAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVV 305 (481)
Q Consensus 244 l~iii~~~~-------~--~~~----~~~l~~~~~-----~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~ 305 (481)
++.+++.+. . +.+ .++....+| .++..++...+++|.+.+.+..+.+|+|||+|++||++..
T Consensus 166 l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~ 245 (471)
T PRK11387 166 ILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKVIPVAIRT 245 (471)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHH
Confidence 554444321 1 000 111111122 2355666677899999999999999998888999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccccccc--CCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC--
Q 044157 306 GTSIPLGLFLVWNAVILGSISGLEMS--SGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLK-- 381 (481)
Q Consensus 306 g~~i~~v~Yll~~~~v~G~~~~~~~~--~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~-- 381 (481)
+..+..++|++..+++.+..|.++.. +++..+.++.. ..++...++.+...++++++.++..++..|.+...-+
T Consensus 246 ~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~--g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a~ardg 323 (471)
T PRK11387 246 TIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKV--GIPYAADIFNFVILTAILSAANSGLYASGRMLWSLSNEG 323 (471)
T ss_pred HHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHc--CCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcC
Confidence 99999999999888888888876532 22333333333 2466677778888888888888888877776533222
Q ss_pred -------CCCCCCCcchhhHhhH--HHH--HH-HHhCchH-HHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCC---
Q 044157 382 -------LPSGQSSPQPYLLTLI--PPL--VL-SLLDPEI-FFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPS--- 445 (481)
Q Consensus 382 -------~~~~~~r~~~~~l~~~--~~l--li-a~~~P~~-f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~--- 445 (481)
+.++ ++.+.+.+++. ..+ ++ ....+++ |..+.++.+... .+.++++++.+++.|+++++.+
T Consensus 324 ~lP~~f~~~~~-~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~--li~y~~~~~~~i~lr~~~~~~~~~~ 400 (471)
T PRK11387 324 TLPACFARLTK-RGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAV--VAVWLSICASHFMFRRRHLRDGKAL 400 (471)
T ss_pred CcCHHHHHhCC-CCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 2122 23343332221 111 11 1122322 233333333222 3456677777777777665432
Q ss_pred CCCCccccCchHHHHHHHHHHHHHHHHH
Q 044157 446 MTIPRIVPGGKLTLSLVIGVAGYIILSE 473 (481)
Q Consensus 446 ~~~~~~vpg~~~~~~~~i~~~~~~~~~~ 473 (481)
.+||||+|++|+.+++.++..+++++..
T Consensus 401 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 428 (471)
T PRK11387 401 SELAYRAPWYPLTPILGFVLCLLACVGL 428 (471)
T ss_pred CCCCccCCCccHHHHHHHHHHHHHHHHH
Confidence 2689999999999998888777666543
No 15
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.96 E-value=9.5e-28 Score=241.60 Aligned_cols=379 Identities=15% Similarity=0.164 Sum_probs=292.7
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHh-HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGIL-AIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAM 164 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL-~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~ 164 (481)
-+|.++..+..++-+|.+||+|.+ +.-.+++.+|- .-++..++++++.+.-+..+.|+..+.|. .+|+.++++
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGP-SvlLaY~I~G~~~f~iMRaLGEm~~~~p~-----~gSF~~~a~ 84 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGP-SVLLAYLIAGIFVFLIMRALGEMLVANPV-----SGSFSDYAR 84 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCcHHHHHH
Confidence 356688889999999999999988 44557788882 34566899999999999999999998873 569999999
Q ss_pred HHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhh-cCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHH
Q 044157 165 RTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFL-GIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIIS 243 (481)
Q Consensus 165 ~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~-~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~ 243 (481)
+++|++++++++|.|++.....+.+-+.+.+.+++.++ ++|.|+..+.+.++...+|+.++ |..++++.++..+|+++
T Consensus 85 ~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL~sV-k~FGE~EfWfAlIKV~a 163 (462)
T COG1113 85 KYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNLISV-KVFGELEFWFALIKVAA 163 (462)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888999999999999999 48999999998888888998887 99999999999999888
Q ss_pred HHHHHHHhc-------Cc----ccccccc------cccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHH
Q 044157 244 FTALVFVAS-------GD----LQWNALL------KANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVG 306 (481)
Q Consensus 244 l~iii~~~~-------~~----~~~~~l~------~~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g 306 (481)
++.+++.+. +. .+.+|+. |.++.+++.++-+.+|||++.|.+-....|.+||+|.+|||+.--
T Consensus 164 Ii~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V 243 (462)
T COG1113 164 IIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSV 243 (462)
T ss_pred HHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhh
Confidence 777665431 11 1223433 345678899999999999999999988899988889999999998
Q ss_pred HHHHHHHHHHHHHHHHhccccccc--cCCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCC
Q 044157 307 TSIPLGLFLVWNAVILGSISGLEM--SSGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPS 384 (481)
Q Consensus 307 ~~i~~v~Yll~~~~v~G~~~~~~~--~~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~~~~ 384 (481)
..-..++|+.-.++++...|+++. .++|.-...+.+. -++...+++.+.+.|..+++++..++..|.+..+-+..+
T Consensus 244 ~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iG--i~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~ 321 (462)
T COG1113 244 IWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIG--IPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGD 321 (462)
T ss_pred hHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcC--CcccccceeEEEeechhhcccccccccchHHHHHhhcCc
Confidence 888999999877888888898752 2334433333332 366667788888888888999888888877765533221
Q ss_pred ------C--CCCcchh-----hHhhHHHHHHHHhCchH-HHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCc
Q 044157 385 ------G--QSSPQPY-----LLTLIPPLVLSLLDPEI-FFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPR 450 (481)
Q Consensus 385 ------~--~~r~~~~-----~l~~~~~llia~~~P~~-f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~ 450 (481)
+ ++..+.. .....+..++.+..|+. |..+.+..+......+..+ .+.++|.||++++..++.+|
T Consensus 322 APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I--~~s~l~~rk~~~~~~~~~~f 399 (462)
T COG1113 322 APKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMI--LLSQLKLRKAKPAEGKKLKF 399 (462)
T ss_pred ccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcchhcccCccc
Confidence 1 2223322 22334566788889964 6677776666654444444 57788888866665567789
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHH
Q 044157 451 IVPGGKLTLSLVIGVAGYIILSEIL 475 (481)
Q Consensus 451 ~vpg~~~~~~~~i~~~~~~~~~~~~ 475 (481)
|+|++|+..++++++-..+++...+
T Consensus 400 km~~~p~~~~l~l~fl~~vlv~m~~ 424 (462)
T COG1113 400 KMPLYPFTNYLTLAFLAFVLVLMLF 424 (462)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHc
Confidence 9999999999998776666655443
No 16
>PRK10249 phenylalanine transporter; Provisional
Probab=99.96 E-value=1.2e-26 Score=244.77 Aligned_cols=376 Identities=15% Similarity=0.145 Sum_probs=263.9
Q ss_pred hccCCCcHHHHHHHHHHHHHhHHHhHHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHH
Q 044157 85 LKRESGSLSSAIFLVAGTTVGAGILAIPAVT-QEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMA 163 (481)
Q Consensus 85 ~~~~~~s~~~a~~~iigt~IGaGIL~LP~~~-a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a 163 (481)
..+|+++.++..++.+|++||+|++.+|... +.+|. ..++..++++++.+..+++++|++.++|. .+++++++
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~P~-----~Gg~~~y~ 91 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEEPV-----SGSFAHFA 91 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHH
Confidence 3457799999999999999999999999855 45564 57778889999999999999999999995 45799999
Q ss_pred HHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHH
Q 044157 164 MRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-IPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIII 242 (481)
Q Consensus 164 ~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~ 242 (481)
++.+|+..+++++|.+++.......+...+.+.+++.+++ .|.+.....+.+++..++++|. |..++++.+++..+++
T Consensus 92 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~lN~~gv-~~~~~i~~~~~~ikv~ 170 (458)
T PRK10249 92 YKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDVPTWIWAAAFFIIINAVNLVNV-RLYGETEFWFALIKVL 170 (458)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcHHHHHHHHHHHHHHHHHhcc-hhhhhHHHHHHHHHHH
Confidence 9999999999999998877655555555566677776654 5666666666667778899998 8999999998887766
Q ss_pred HHHHHHHHhc-----Cc----ccccccc------cccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHH
Q 044157 243 SFTALVFVAS-----GD----LQWNALL------KANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGT 307 (481)
Q Consensus 243 ~l~iii~~~~-----~~----~~~~~l~------~~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~ 307 (481)
.++++++.+. .+ .+.++.. +.+|.++..++....++|.+.+.+..+.+|+++|+|++||++..+.
T Consensus 171 ~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~ 250 (458)
T PRK10249 171 AIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVV 250 (458)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHH
Confidence 5444433211 11 1122211 1245567788888899999999999999999888899999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccc--CCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC----
Q 044157 308 SIPLGLFLVWNAVILGSISGLEMS--SGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLK---- 381 (481)
Q Consensus 308 ~i~~v~Yll~~~~v~G~~~~~~~~--~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~---- 381 (481)
....++|++...+..+..|..+.. +++..+.++.. ..++...++..+..++.+++.++..++..|.+...-+
T Consensus 251 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~ardg~l 328 (458)
T PRK10249 251 YRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNL--DSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNA 328 (458)
T ss_pred HHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHc--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999998777777777765422 12222333322 2355666777777788888888877777766533222
Q ss_pred -----CCCCCCCcchhhHhh--HHHH---HHHHhCch-HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCc
Q 044157 382 -----LPSGQSSPQPYLLTL--IPPL---VLSLLDPE-IFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPR 450 (481)
Q Consensus 382 -----~~~~~~r~~~~~l~~--~~~l---lia~~~P~-~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~ 450 (481)
+.++ ++.+...+.+ +... ++....|+ .|..+++..+... .+.+.++++.+++.||+.++.++++||
T Consensus 329 P~~~~kv~~-~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~--~i~y~~~~~~~l~~r~~~~~~~~~~p~ 405 (458)
T PRK10249 329 PKFLTRVSR-RGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATL--LLNWIMICLAHLRFRAAMRRQGRETQF 405 (458)
T ss_pred CHHHHHhCC-CCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 1122 2333332221 2221 12224443 3555666554443 467778888888887643333347899
Q ss_pred cccCchHHHHHHHHHHHHHHHH
Q 044157 451 IVPGGKLTLSLVIGVAGYIILS 472 (481)
Q Consensus 451 ~vpg~~~~~~~~i~~~~~~~~~ 472 (481)
|.|.+|+.+++.++...++++.
T Consensus 406 ~~~~~p~~~~~~l~~~~~~~v~ 427 (458)
T PRK10249 406 KALLYPFGNYLCIAFLGMILLL 427 (458)
T ss_pred cCCCccHHHHHHHHHHHHHHHH
Confidence 9999999998887766655543
No 17
>PRK10746 putative transport protein YifK; Provisional
Probab=99.96 E-value=6.4e-26 Score=239.20 Aligned_cols=377 Identities=13% Similarity=0.102 Sum_probs=269.5
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHHH-HHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPAV-TQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAM 164 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~~-~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~ 164 (481)
.+|+++.++..++.+|++||+|++..|.. ++.+|. ..++..++++++.+..+..++|++.+.|. .++++++++
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~P~-----sGg~~~y~~ 81 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLEPV-----TGSFAVYAH 81 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCHHHHHH
Confidence 46779999999999999999999998874 556775 46677888889989999999999999984 458999999
Q ss_pred HHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHH
Q 044157 165 RTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-IPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIIS 243 (481)
Q Consensus 165 ~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~ 243 (481)
+.+|+..+++++|.+++.......+...+.+.+++.+++ .|.|....++.+++..+|++|. |..++++.+.+..++..
T Consensus 82 ~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~~~~~~~~~~~~~~~~lN~~gv-~~~~~~e~~~~~~ki~~ 160 (461)
T PRK10746 82 RYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEMAQWIPALIAVALVALANLAAV-RLYGEIEFWFAMIKVTT 160 (461)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999887655556666677788877764 6667766666677777899998 89999999988877665
Q ss_pred HHHHHHHh-------cCc----ccccccc------cccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHH
Q 044157 244 FTALVFVA-------SGD----LQWNALL------KANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVG 306 (481)
Q Consensus 244 l~iii~~~-------~~~----~~~~~l~------~~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g 306 (481)
++++++.+ ..+ ...++.. +.++.++..++....++|.+.+.+....+|.+||+|++||++..+
T Consensus 161 i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~~ 240 (461)
T PRK10746 161 IIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTLRSAVGKV 240 (461)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHHH
Confidence 54443321 111 1112221 123556778888889999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccc--CCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCC--
Q 044157 307 TSIPLGLFLVWNAVILGSISGLEMS--SGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKL-- 382 (481)
Q Consensus 307 ~~i~~v~Yll~~~~v~G~~~~~~~~--~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~~-- 382 (481)
.....++|++..+++.+..|+++.. +.+..+.++... .+....+++.+.+.+.+++.++..++..|.+...-+.
T Consensus 241 ~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g--~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~a~~g~ 318 (461)
T PRK10746 241 LWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIG--ITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQ 318 (461)
T ss_pred HHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9999999999888888888887532 223333333331 2445567777777888888888888877766433221
Q ss_pred -------CCCCCCcchhhHhhH-HH----HHHHHhCch---HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCC
Q 044157 383 -------PSGQSSPQPYLLTLI-PP----LVLSLLDPE---IFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMT 447 (481)
Q Consensus 383 -------~~~~~r~~~~~l~~~-~~----llia~~~P~---~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~ 447 (481)
.++ ++.+...+.+. .. ..+....|+ .|..+.+..+... .+..++++..+++.||++|+.+++
T Consensus 319 lP~~~~~~~~-~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~--~i~w~~i~~~~i~~r~~~~~~~~~ 395 (461)
T PRK10746 319 LPAAMAKVSR-HGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPG--MVPWFVILISQLRFRRAHKAAIAS 395 (461)
T ss_pred cCHHHHHhCC-CCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccccccC
Confidence 122 23333332221 11 122223442 1444444444433 456667788888999888764457
Q ss_pred CCccccCchHHHHHHHHHHHHHHHHHH
Q 044157 448 IPRIVPGGKLTLSLVIGVAGYIILSEI 474 (481)
Q Consensus 448 ~~~~vpg~~~~~~~~i~~~~~~~~~~~ 474 (481)
+|||.|++|+..++.++..+++++...
T Consensus 396 ~~~~~~~~p~~~~~~~~~~~~~~~~~~ 422 (461)
T PRK10746 396 HPFRSILFPWANYLTMAFLICVLIGMY 422 (461)
T ss_pred CCCcCCCccHHHHHHHHHHHHHHHHHH
Confidence 899999999999988777776665543
No 18
>TIGR00909 2A0306 amino acid transporter.
Probab=99.96 E-value=2.3e-26 Score=240.64 Aligned_cols=368 Identities=18% Similarity=0.209 Sum_probs=263.8
Q ss_pred cCCCcHHHHHHHHHHHHHhHHHhHHHHHHH-hhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHH
Q 044157 87 RESGSLSSAIFLVAGTTVGAGILAIPAVTQ-EAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMR 165 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaGIL~LP~~~a-~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~ 165 (481)
+|+.|.++.+++.+++++|+|++.+|.... ..|. ..++..++++++....+++++|++.++|+ .++.+++.++
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p~-----~Gg~y~~~~~ 75 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLPV-----AGSPYTYAYE 75 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCcceeeHHH
Confidence 577999999999999999999999998655 3443 45667778888888899999999999984 3478899999
Q ss_pred HhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-----CchHH------------HHHHHHHHHHHHHhhChhhH
Q 044157 166 TIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-----IPLWE------------SATLFSLILGGLCYFGSQRF 228 (481)
Q Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-----lp~~~------------~~i~~~li~~~i~~lg~~k~ 228 (481)
.+||+.+++.+|.+++.......++....++++..+++ .|.+. ..+.+.++++.+++.|. |.
T Consensus 76 ~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~-~~ 154 (429)
T TIGR00909 76 AMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGA-KE 154 (429)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCc-HH
Confidence 99999999999998877666666777777788776653 23322 22445566677888888 89
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHhcCccccccccc---ccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHH
Q 044157 229 IGAANGALVVGIIISFTALVFVASGDLQWNALLK---ANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVV 305 (481)
Q Consensus 229 ~~~~~~i~~~~~i~~l~iii~~~~~~~~~~~l~~---~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~ 305 (481)
.++++.+.+..++..++++++.+..+.+.++..+ .++.++..++...+++|.+.+....+.+|.|||+|++||++..
T Consensus 155 ~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~ 234 (429)
T TIGR00909 155 SGKVNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIIL 234 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHH
Confidence 9999999999888877665555544444333332 2344567778888999999999999999998778999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccCC--CcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC--
Q 044157 306 GTSIPLGLFLVWNAVILGSISGLEMSSG--QIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLK-- 381 (481)
Q Consensus 306 g~~i~~v~Yll~~~~v~G~~~~~~~~~~--~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~-- 381 (481)
+..++.++|++++....+..|.++..++ +..+..+.. .+++...++.+...++..++.++...+..|.+...-+
T Consensus 235 ~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg 312 (429)
T TIGR00909 235 SLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDL--GQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDG 312 (429)
T ss_pred HHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHh--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999998888888887653222 222233322 2466677788888888888888888887776643322
Q ss_pred -------CCCCCCCcchhhHhh--HHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccc
Q 044157 382 -------LPSGQSSPQPYLLTL--IPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIV 452 (481)
Q Consensus 382 -------~~~~~~r~~~~~l~~--~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~v 452 (481)
+.|++++.+...+.+ +..+++....+ ++.+.++.+... .+.+++.++...+.|||+|+. +||||.
T Consensus 313 ~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~--~~~l~~~~~~~~--~~~y~~~~~a~~~lr~~~~~~--~~~~~~ 386 (429)
T TIGR00909 313 LLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVP--LEGLAELTSIGT--LIAFAAVNVAVIILRRRRPDI--QRAFRC 386 (429)
T ss_pred CCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHH--HHHHHHHHHHHHHHHhhcCCC--CCCCCC
Confidence 112233444433222 33333333332 566666554333 345666677777888888875 789999
Q ss_pred cCchHHHHHHHHHHHHH
Q 044157 453 PGGKLTLSLVIGVAGYI 469 (481)
Q Consensus 453 pg~~~~~~~~i~~~~~~ 469 (481)
|+.++...+++....++
T Consensus 387 ~~~~~~~~~~~~~~~~~ 403 (429)
T TIGR00909 387 PLVPVLPVLVVSYCIYL 403 (429)
T ss_pred CcchHHHHHHHHHHHHH
Confidence 99987776665444443
No 19
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.96 E-value=1.8e-25 Score=236.44 Aligned_cols=373 Identities=14% Similarity=0.127 Sum_probs=256.2
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPA-VTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAM 164 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~-~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~ 164 (481)
.+|+++.+++.++.+|++||+|++..|. +++++|. ..+...++++++.+..+..++|++...|. ..+++++++
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~~~-----~~~~~~ya~ 91 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSNLE-----YKSFSDFAS 91 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCcHHHHHH
Confidence 5677999999999999999999999887 5566775 45667888888888899999999987653 457889999
Q ss_pred HHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHH
Q 044157 165 RTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-IPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIIS 243 (481)
Q Consensus 165 ~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~ 243 (481)
+.+||..+++++|.+++.......+...+.+.+++.+++ .+.+....++.+++..+|++|. |..+++|.+.+..++..
T Consensus 92 ~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~~~~~~~~~~~~~~~~iN~~g~-~~~~~i~~~~~~~kl~~ 170 (469)
T PRK11049 92 DLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDLSDWVASLAVVLLLLSLNLATV-KMFGEMEFWFAMIKIVA 170 (469)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999876544445555666677776664 4556555556566777899998 89999999998888776
Q ss_pred HHHHHHHhc----C-----ccc---ccccc------cccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHH
Q 044157 244 FTALVFVAS----G-----DLQ---WNALL------KANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVV 305 (481)
Q Consensus 244 l~iii~~~~----~-----~~~---~~~l~------~~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~ 305 (481)
++.+++.+. . +.+ .++.. +.++.++..++...+++|.+.+.+....+|+|+++|++||++..
T Consensus 171 l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~ 250 (469)
T PRK11049 171 IVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSLPRAINS 250 (469)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHH
Confidence 655544322 1 100 11111 12334577888888999999999999999998888999999988
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccC--CCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC--
Q 044157 306 GTSIPLGLFLVWNAVILGSISGLEMSS--GQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLK-- 381 (481)
Q Consensus 306 g~~i~~v~Yll~~~~v~G~~~~~~~~~--~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~-- 381 (481)
+.....+.|++.+....+..|.++... ++..+..+.. ..++...++.+...++..++.++...+..|.+...-+
T Consensus 251 ~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~--g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ardg 328 (469)
T PRK11049 251 IPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLV--GLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEG 328 (469)
T ss_pred HHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHc--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 788889999987777777777665321 2222333222 1355666777777777777777777777666543322
Q ss_pred -------CCCCCCCcchhhHhhH--H---HHHHHHhCch---HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 044157 382 -------LPSGQSSPQPYLLTLI--P---PLVLSLLDPE---IFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSM 446 (481)
Q Consensus 382 -------~~~~~~r~~~~~l~~~--~---~llia~~~P~---~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~ 446 (481)
+.+++ +.+.+.+++. . .+.+....|+ .|..+.+.. .+.. .+.+.+++..+++.|+++|+..+
T Consensus 329 ~lP~~~~kv~~~-~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~-~i~y~~~~~a~~~lr~~~p~~~~ 405 (469)
T PRK11049 329 VAPKAFAKLSKR-AVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVS-AILF-MFVWTIILCSYLVYRKQRPHLHE 405 (469)
T ss_pred CCCHHHHhhCCC-CCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHH-HHHHHHHHHHHHHHHHhhhhcCC
Confidence 11222 3443333221 1 1223334453 233333332 3222 45677888888899988887532
Q ss_pred CCCccccCchHHHHHHHHHHHHHH
Q 044157 447 TIPRIVPGGKLTLSLVIGVAGYII 470 (481)
Q Consensus 447 ~~~~~vpg~~~~~~~~i~~~~~~~ 470 (481)
+||||+|++++..++.++...+++
T Consensus 406 ~~pf~~p~~~~~~~~~~~~~~~~~ 429 (469)
T PRK11049 406 KSIYKMPLGKLMCWVCMAFFAFVL 429 (469)
T ss_pred CCCccCcCcchHHHHHHHHHHHHH
Confidence 478999999888877666554444
No 20
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.96 E-value=3.3e-26 Score=246.04 Aligned_cols=341 Identities=15% Similarity=0.128 Sum_probs=239.3
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHHHHH--hhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPAVTQ--EAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMA 163 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a--~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a 163 (481)
.+|+++.++.+++.+|.+||+|++.++...+ .+|. ..++.++++++.+...+++++|++.+.|+ .++.+.++
T Consensus 26 L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp-~~~ls~liagv~~l~~al~yaElas~~P~-----sGg~Y~y~ 99 (557)
T TIGR00906 26 MKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGP-AIVLSFLISGLAAVLSGFCYAEFGARVPK-----AGSAYLYS 99 (557)
T ss_pred hhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCcceeeH
Confidence 4677999999999999999999999997543 4664 35677888999999999999999999995 45788899
Q ss_pred HHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc------------C--c-----hHHHHHHHHHHHHHHHhhC
Q 044157 164 MRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG------------I--P-----LWESATLFSLILGGLCYFG 224 (481)
Q Consensus 164 ~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~------------l--p-----~~~~~i~~~li~~~i~~lg 224 (481)
++.+|+..+++++|.+++.......+...+.++++.++++ . + .....+...++++.++.+|
T Consensus 100 ~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~G 179 (557)
T TIGR00906 100 YVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFG 179 (557)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhc
Confidence 9999999999999998876554444444455555544331 0 1 1122334445566788899
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHhcCcccccccc-----------cccccchhhhhhHHhhhccCcchHHHhHHhhc
Q 044157 225 SQRFIGAANGALVVGIIISFTALVFVASGDLQWNALL-----------KANFEAVPMSIPIIALSFVYQNVVPVLCTNLE 293 (481)
Q Consensus 225 ~~k~~~~~~~i~~~~~i~~l~iii~~~~~~~~~~~l~-----------~~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~ 293 (481)
. |..+++|.+++..+++.++++++.+..+.+.+|.. +.++.+++.+....+|+|.+.+.+..+.+|.|
T Consensus 180 i-k~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~k 258 (557)
T TIGR00906 180 V-KESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVK 258 (557)
T ss_pred h-hHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhcc
Confidence 8 99999999999998887777666665443333321 22344677788888999999999999999998
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc-CCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhH
Q 044157 294 GNLSKVRTAIVVGTSIPLGLFLVWNAVILGSISGLEMS-SGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGL 372 (481)
Q Consensus 294 ~~~k~~~kai~~g~~i~~v~Yll~~~~v~G~~~~~~~~-~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l 372 (481)
||+|++||++..+..+++++|++...+..+..|+++.. +++..+..+.. ..++...++.+.+.+++.++.++..++.
T Consensus 259 nP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~--g~~~~~~ii~~~~~~~~~~sl~~~~~~~ 336 (557)
T TIGR00906 259 NPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYV--GWGPAKYIVAVGALCGMSTSLLGGMFPL 336 (557)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHc--CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999988888888876532 12222322222 2355667778888888888888888887
Q ss_pred HHHHHhhcC---------CCCCCCCcchhhHh--hHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhc
Q 044157 373 SDFLADLLK---------LPSGQSSPQPYLLT--LIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRY 439 (481)
Q Consensus 373 ~~~l~~~~~---------~~~~~~r~~~~~l~--~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~ 439 (481)
.|.+..+-+ +.|++++.+...++ .+...+++.+.| +..+.++..... .+.+.+++...+.+|+
T Consensus 337 sRil~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~--~~~l~~l~sig~--ll~y~lv~~~~l~lR~ 410 (557)
T TIGR00906 337 PRVIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFD--LKALVDLLSIGT--LLAYSLVAACVLILRY 410 (557)
T ss_pred HHHHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHH--HHHHHHHHHHHHHhhc
Confidence 776543322 22333344443322 234445555554 445555443332 3566777776666663
No 21
>PRK10655 potE putrescine transporter; Provisional
Probab=99.96 E-value=8.6e-26 Score=237.05 Aligned_cols=354 Identities=17% Similarity=0.174 Sum_probs=246.5
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMR 165 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~ 165 (481)
++|++|.++++++.+|++||+|++.+|..+++.|. .+++..++++++.+..+++++|++.++|+ .++.+.++++
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~P~-----~GG~y~y~~~ 77 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFSRK-----SGGMGGYAEY 77 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhCCC-----CCchHHHHHH
Confidence 46789999999999999999999999988887775 56778888999999999999999999885 4578999999
Q ss_pred HhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcC--ch---HHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHH
Q 044157 166 TIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGI--PL---WESATLFSLILGGLCYFGSQRFIGAANGALVVGI 240 (481)
Q Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l--p~---~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~ 240 (481)
.+||..+++.+|.+++.......++.....+++..+++. +. +...+.+..++..+++.|. |..+++|.+.+..+
T Consensus 78 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~ln~~g~-~~~~~i~~i~~~~~ 156 (438)
T PRK10655 78 AFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPVQICLATIGVLWLCTVANFGGA-RITGQISSVTVWGV 156 (438)
T ss_pred HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHH
Confidence 999999999999987766555555555566777776652 12 2333334455667888898 89999999988877
Q ss_pred HHHHHHHHHHhcCcccccccc----ccc---ccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHHH
Q 044157 241 IISFTALVFVASGDLQWNALL----KAN---FEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGL 313 (481)
Q Consensus 241 i~~l~iii~~~~~~~~~~~l~----~~~---~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v~ 313 (481)
++.++++++.+....+.++.. +.+ +.++..++....++|.+.+....+.+|.|||+|++||++..+..++.++
T Consensus 157 l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~ 236 (438)
T PRK10655 157 IIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVI 236 (438)
T ss_pred HHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHH
Confidence 766655554433222222221 111 2345566777789999999999999999888899999999999999999
Q ss_pred HHHHHHHHHhcccccccc--CCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh---------cCC
Q 044157 314 FLVWNAVILGSISGLEMS--SGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADL---------LKL 382 (481)
Q Consensus 314 Yll~~~~v~G~~~~~~~~--~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~---------~~~ 382 (481)
|++...+..+..|.++.. +.+..+..+... +++...++.....++..++.++...+..|.+... +.+
T Consensus 237 Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~--g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP~~~~~ 314 (438)
T PRK10655 237 YIVSTNVIAGIVPNMELANSTAPFGLAFAQMF--NPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKIFSR 314 (438)
T ss_pred HHHHHHHHHhCCCHHHHhhccchHHHHHHHHc--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHh
Confidence 998777788887766532 223334444333 3555667777777777778877777666654322 222
Q ss_pred CCCCCCcchhhHhh--HHHHHHH--HhCc---hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcccc
Q 044157 383 PSGQSSPQPYLLTL--IPPLVLS--LLDP---EIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVP 453 (481)
Q Consensus 383 ~~~~~r~~~~~l~~--~~~llia--~~~P---~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~vp 453 (481)
.++ ++.+...+++ +...++. ...| +.|+.++++.+... .+.+.++++.++++|+|+|+. +||||.|
T Consensus 315 v~~-~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~--~i~y~~~~~~~~~lr~~~~~~--~~~~~~~ 387 (438)
T PRK10655 315 VTK-VDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTN--IIPYILSMAALVIIQKVANVP--PSKAKVA 387 (438)
T ss_pred hCc-CCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhhCCCC--cchhHHH
Confidence 222 2344333222 2222222 2223 23666666555444 457778888888888887764 7788864
No 22
>PRK10836 lysine transporter; Provisional
Probab=99.96 E-value=2.9e-25 Score=236.13 Aligned_cols=381 Identities=13% Similarity=0.120 Sum_probs=255.5
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHHH-HHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPAV-TQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAM 164 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~~-~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~ 164 (481)
.+|+++.++++++.+|++||+|++.+|.. ++++|....++..++++++++..+++++|++.++|+ .++.+.+++
T Consensus 13 l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~-----sGg~y~y~~ 87 (489)
T PRK10836 13 LRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV-----SGSFATYGQ 87 (489)
T ss_pred ccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCHHHHHH
Confidence 46789999999999999999999999984 556775446788999999999999999999999995 457999999
Q ss_pred HHhChhhhHHHHHHHHHHHHHHHHHHHHHhHh-Hhhhhhc-CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHH
Q 044157 165 RTIGTVGVQIASWSYIFIHYTLLVAYVARSSD-ILTNFLG-IPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIII 242 (481)
Q Consensus 165 ~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~-~l~~~~~-lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~ 242 (481)
+++|+..+++++|.+++. +....+.....++ +++.+++ .|.+.....+.+++..+|++|. |..+++|.+++..++.
T Consensus 88 ~~~g~~~gf~~Gw~~~~~-~~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~lN~~gv-~~~~~~~~~~~~~ki~ 165 (489)
T PRK10836 88 NYVEEGFGFALGWNYWYN-WAVTIAVDLVAAQLVMSWWFPDTPGWIWSALFLGVIFLLNYISV-RGFGEAEYWFSLIKVT 165 (489)
T ss_pred HHcChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHcc-hhhhhhHHHHHHHHHH
Confidence 999999999999998764 4433333322233 3444432 4555555555566677899998 8999999998888776
Q ss_pred HHHHHHHHh------cCc----cccccccc------ccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHH
Q 044157 243 SFTALVFVA------SGD----LQWNALLK------ANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVG 306 (481)
Q Consensus 243 ~l~iii~~~------~~~----~~~~~l~~------~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g 306 (481)
.++.+++.+ ..+ .+.++..+ .++.++..+.....|+|.+.+.+..+.+|.|||+|++||++..+
T Consensus 166 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~ 245 (489)
T PRK10836 166 TVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNIPRAVRQV 245 (489)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 554433221 111 11122211 12223344444557999999999999999988889999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccc--CCC----cchhHHH-hhh-cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 044157 307 TSIPLGLFLVWNAVILGSISGLEMS--SGQ----IVDPIQQ-LRS-SNGAVGPIIDVFSFLAIATSYIGFILGLSDFLAD 378 (481)
Q Consensus 307 ~~i~~v~Yll~~~~v~G~~~~~~~~--~~~----~~~~l~~-l~~-~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~ 378 (481)
...++++|++.+.+..+.+|+++.. .++ ..++... +.. ..++...+++.+.+.+++++.++..++..|.+..
T Consensus 246 ~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~a 325 (489)
T PRK10836 246 FWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYASTRMLYT 325 (489)
T ss_pred HHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888888887764311 010 1123222 221 1244556777777888888888888888776643
Q ss_pred hcC---------CCCCCCCcchhhHhh--HHHHHHH---HhCch-HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcc---
Q 044157 379 LLK---------LPSGQSSPQPYLLTL--IPPLVLS---LLDPE-IFFKALDFAGTYGVLVLFGILPAVMSWSDRYS--- 440 (481)
Q Consensus 379 ~~~---------~~~~~~r~~~~~l~~--~~~llia---~~~P~-~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~--- 440 (481)
.-+ +.++ ++.+...+.+ +.+++.. ...++ .|..+.++.+... .+.+++.++.+++.||+
T Consensus 326 ~Ardg~lP~~~~kv~~-~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--~~~y~~~~~a~l~~R~~~~~ 402 (489)
T PRK10836 326 LACDGKAPRIFAKLSR-GGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTG--FIAWLGIAISHYRFRRGYVL 402 (489)
T ss_pred HHcCCCcCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 322 1122 2334333222 2222211 12222 2444555555433 34556667778887775
Q ss_pred -CCCCCCCCCccccCchHHHHHHHHHHHHHHHHHHHHH
Q 044157 441 -SSSPSMTIPRIVPGGKLTLSLVIGVAGYIILSEILEK 477 (481)
Q Consensus 441 -~~~~~~~~~~~vpg~~~~~~~~i~~~~~~~~~~~~~~ 477 (481)
+|+. ++||||+|++|+.+++.++..+++++....+.
T Consensus 403 ~~~~~-~~~p~~~p~~p~~~~~~~~~~~~~~~~~~~~~ 439 (489)
T PRK10836 403 QGHDL-NDLPYRSGFFPLGPIFAFVLCLIITLGQNYEA 439 (489)
T ss_pred cCCCc-CCCCCcCCCccHHHHHHHHHHHHHHHHHHHHh
Confidence 3443 24799999999999999888888877655543
No 23
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.96 E-value=3.8e-25 Score=233.39 Aligned_cols=374 Identities=16% Similarity=0.166 Sum_probs=255.3
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPAVT-QEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAM 164 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~~~-a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~ 164 (481)
.+|+++.++.+++.+|++||+|++.+|... +.+|. .+++..++++++.+..+.+++|++.++|. .++.+++++
T Consensus 7 l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-----~Gg~y~y~~ 80 (457)
T PRK10580 7 LKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHNPA-----ASSFSRYAQ 80 (457)
T ss_pred ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----CCCHHHHHH
Confidence 467799999999999999999999999864 45564 56888999999999999999999999984 457899999
Q ss_pred HHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHH
Q 044157 165 RTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-IPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIIS 243 (481)
Q Consensus 165 ~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~ 243 (481)
+.+||..+++++|.+++.......+...+.+.+++.+++ .|.+...+.+.+++..++++|. |..+++|.+++..++..
T Consensus 81 ~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ln~~gv-~~~~~~~~~~~~~~~~~ 159 (457)
T PRK10580 81 ENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTVPHWIWVLSVVLIICAVNLMSV-KVFGELEFWFSFFKVAT 159 (457)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHccc-hhHHHHHHHHHHHHHHH
Confidence 999999999999998776544444444566677766653 5666656666666778898998 89999999988887765
Q ss_pred HHHHHHHh-------cCcc-c---ccccc------cccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHH
Q 044157 244 FTALVFVA-------SGDL-Q---WNALL------KANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVG 306 (481)
Q Consensus 244 l~iii~~~-------~~~~-~---~~~l~------~~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g 306 (481)
++++++.+ ..+. + .++.. +.++.++..++...+++|.+.+......+|.+||+|++||++..+
T Consensus 160 l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~~ 239 (457)
T PRK10580 160 IIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSV 239 (457)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHHH
Confidence 54443221 1110 1 11111 112335667777889999999999999999988889999999998
Q ss_pred HHHHHHHHHHHHHHHHhcccccccc--CCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-----
Q 044157 307 TSIPLGLFLVWNAVILGSISGLEMS--SGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADL----- 379 (481)
Q Consensus 307 ~~i~~v~Yll~~~~v~G~~~~~~~~--~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~----- 379 (481)
.....++|+...+.+.+..|.++.. +.+..+..+... .++...++.....++.+++.++..++..|.+...
T Consensus 240 ~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ardg~ 317 (457)
T PRK10580 240 PMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMG--ITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGS 317 (457)
T ss_pred HHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 8888999988777777777765532 122222222221 2445556666666777777777777766654322
Q ss_pred ----cCCCCCCCCcchhhHhhH-----HHHHHHHhCchH-HHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCC-CCCC
Q 044157 380 ----LKLPSGQSSPQPYLLTLI-----PPLVLSLLDPEI-FFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSP-SMTI 448 (481)
Q Consensus 380 ----~~~~~~~~r~~~~~l~~~-----~~llia~~~P~~-f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~-~~~~ 448 (481)
+.+.|+ ++.+...+.+. ....+....|++ |..+.+..+... .+.++++++.+++.||+.++. .+++
T Consensus 318 lP~~~~kv~~-~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~y~~~~~~~~~lr~~~~~~~~~~~ 394 (457)
T PRK10580 318 APKIFSKTSR-RGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFAT--VWVWIMILLSQIAFRRRLPPEEVKAL 394 (457)
T ss_pred cCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 122222 23343332221 111222345533 344444443332 457788888888888775432 2467
Q ss_pred CccccCchHHHHHHHHHHHHHHH
Q 044157 449 PRIVPGGKLTLSLVIGVAGYIIL 471 (481)
Q Consensus 449 ~~~vpg~~~~~~~~i~~~~~~~~ 471 (481)
|||+|++++..++.+....++++
T Consensus 395 ~f~~~~~~~~~~~~~~~~~~~~~ 417 (457)
T PRK10580 395 KFKVPGGVATTIGGLIFLVFIIG 417 (457)
T ss_pred CcccCCccHHHHHHHHHHHHHHH
Confidence 99999999999988776665543
No 24
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.96 E-value=2.5e-25 Score=234.49 Aligned_cols=377 Identities=14% Similarity=0.141 Sum_probs=266.1
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPAVT-QEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAM 164 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~~~-a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~ 164 (481)
.+|+++.++..++.+|++||+|++..|... +++|- ..++..++++++.+..+++++|++.++|. .++++++++
T Consensus 10 l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~-----aGg~y~~~~ 83 (456)
T PRK10238 10 LKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPV-----AGSFSHFAY 83 (456)
T ss_pred hhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCHHHHHH
Confidence 568899999999999999999999999865 45664 56777889999999999999999999994 458999999
Q ss_pred HHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHH
Q 044157 165 RTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-IPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIIS 243 (481)
Q Consensus 165 ~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~ 243 (481)
+.+||..+++++|.+++.......+...+.+++++.+++ .|.|....++.+++..+|++|. |..+++|.+++..++..
T Consensus 84 ~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~lN~~gv-~~~~~~~~~~~~iki~~ 162 (456)
T PRK10238 84 KYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPEIPTWVSAAVFFVVINAINLTNV-KVFGEMEFWFAIIKVIA 162 (456)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHH
Confidence 999999999999999888776666666778888877664 5667766666677788899998 89999999998888765
Q ss_pred HHHHHHHh----cC--c---cccccccc------ccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHH
Q 044157 244 FTALVFVA----SG--D---LQWNALLK------ANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTS 308 (481)
Q Consensus 244 l~iii~~~----~~--~---~~~~~l~~------~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~ 308 (481)
++++++.+ .. + ...++..+ .++.++..++....++|.+.+......+|++|++|++||++..+..
T Consensus 163 i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~~ 242 (456)
T PRK10238 163 VVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKATNQVIY 242 (456)
T ss_pred HHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHHH
Confidence 54433311 11 1 11122111 1233455667778899999999999999998888999999998888
Q ss_pred HHHHHHHHHHHHHHhcccccccc--CCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc------
Q 044157 309 IPLGLFLVWNAVILGSISGLEMS--SGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLL------ 380 (481)
Q Consensus 309 i~~v~Yll~~~~v~G~~~~~~~~--~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~------ 380 (481)
...+.|+.......+..|.++.. +++..+.++... .++...+++.+...+.+++.++...+..|.+...-
T Consensus 243 ~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g--~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~ardg~lP 320 (456)
T PRK10238 243 RILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELG--DTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAP 320 (456)
T ss_pred HHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 88889987666666667766532 223223332221 34555667777777777788887777776653322
Q ss_pred ---CCCCCCCCcchhhHh--hHHHHHHH---HhCch-HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcc
Q 044157 381 ---KLPSGQSSPQPYLLT--LIPPLVLS---LLDPE-IFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRI 451 (481)
Q Consensus 381 ---~~~~~~~r~~~~~l~--~~~~llia---~~~P~-~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~ 451 (481)
.+.+++ +.+...+. .+...+.. ...|+ .|..+.++.+... .+.+.+|++.+++.||++++...+++|+
T Consensus 321 ~~f~kv~~~-~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~--~i~y~~~~~~~l~~r~~~~~~~~~~~~~ 397 (456)
T PRK10238 321 KALASVDKR-GVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSAL--VINWAMISLAHMKFRRAKQEQGVVTRFP 397 (456)
T ss_pred HHHHhhCcC-CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence 222222 33333222 22222221 23443 3666666655443 4678888899998888766643356789
Q ss_pred ccCchHHHHHHHHHHHHHHHHHH
Q 044157 452 VPGGKLTLSLVIGVAGYIILSEI 474 (481)
Q Consensus 452 vpg~~~~~~~~i~~~~~~~~~~~ 474 (481)
.|.+|+.+++.+....++++...
T Consensus 398 ~~~~p~~~~~~~~~~~~~~~~~~ 420 (456)
T PRK10238 398 ALLYPLGNWICLLFMAAVLVIML 420 (456)
T ss_pred CCCccHHHHHHHHHHHHHHHHHH
Confidence 99999999999887776665543
No 25
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.95 E-value=1.2e-25 Score=236.56 Aligned_cols=377 Identities=13% Similarity=0.072 Sum_probs=251.0
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHHHH-HhhchH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPAVT-QEAGFL-ASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMA 163 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~~~-a~~G~~-~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a 163 (481)
.+|+.|.++++++.+|+++|+|++..|... +..|.. ..++..+++++++...+++++|++.++|+ .++.+.+.
T Consensus 6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~-----~GG~y~y~ 80 (445)
T PRK11357 6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPE-----NGADYVYL 80 (445)
T ss_pred ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCceeeH
Confidence 467899999999999999999999998864 445533 35566788888899999999999999995 34677788
Q ss_pred HHHhChhhhHHHHHHHHHH-HHHHHHHHHHHhHhHhhhhhcCchH---HHHHHHHHHHHHHHhhChhhHHHhHHHHHHHH
Q 044157 164 MRTIGTVGVQIASWSYIFI-HYTLLVAYVARSSDILTNFLGIPLW---ESATLFSLILGGLCYFGSQRFIGAANGALVVG 239 (481)
Q Consensus 164 ~~~~G~~~~~~~~~~~~~~-~~~~~~ay~~~~g~~l~~~~~lp~~---~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~ 239 (481)
++.+||..+++.+|..++. .......+....++++..+++.+.. .......+++..++..|. |..+++|.+.+..
T Consensus 81 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gv-~~~~~v~~~~~~~ 159 (445)
T PRK11357 81 KNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDPLLGKFIAAGLIIAFMLLHLRSV-EGGAAFQTLITIA 159 (445)
T ss_pred HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHH
Confidence 9999999999999975432 2223445556677777665553322 223333344556788888 8999999999988
Q ss_pred HHHHHHHHHHHhcCcccccccc---c-----c-cccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHH
Q 044157 240 IIISFTALVFVASGDLQWNALL---K-----A-NFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIP 310 (481)
Q Consensus 240 ~i~~l~iii~~~~~~~~~~~l~---~-----~-~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~ 310 (481)
+++.++++++.+....+.++.. + . ++.++..+++..+++|.+.+....+.+|+|||+|++||++..+..++
T Consensus 160 ~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~ 239 (445)
T PRK11357 160 KIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLV 239 (445)
T ss_pred HHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHH
Confidence 8876655554332111111111 0 1 13345667778899999999999999999888899999999999999
Q ss_pred HHHHHHHHHHHHhccccccccC--CCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC-------
Q 044157 311 LGLFLVWNAVILGSISGLEMSS--GQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLK------- 381 (481)
Q Consensus 311 ~v~Yll~~~~v~G~~~~~~~~~--~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~------- 381 (481)
+++|++.+.+..+..|.++..+ .+..+..+.+...+++...++.+.+.+++.++.++..++..|.+...-+
T Consensus 240 ~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~lp~~ 319 (445)
T PRK11357 240 LVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMAKDNLFFKC 319 (445)
T ss_pred HHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcCCchHH
Confidence 9999998888888888765322 2333444433112344455566666677777777777766665432221
Q ss_pred --CCCCCCCcchhhHhh--HHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccCchH
Q 044157 382 --LPSGQSSPQPYLLTL--IPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGKL 457 (481)
Q Consensus 382 --~~~~~~r~~~~~l~~--~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~vpg~~~ 457 (481)
+.|++++.+.+.+.+ +..+++. ..++ +..+.++...... +.+.+-....+++||+++. +||||+|++|+
T Consensus 320 ~~~v~~~~~tP~~a~l~~~~~~~~~~-~~~~-~~~l~~~~~~~~~--~~~~~~~~a~i~lr~~~~~---~~~~k~p~~~~ 392 (445)
T PRK11357 320 FGHVHPKYNTPDVSIILQGALGIFFI-FVSD-LTSLLGYFTLVMC--FKNTLTFGSIIWCRKRDDY---KPLWRTPAFGL 392 (445)
T ss_pred HHHhCCCCCCCHHHHHHHHHHHHHHH-HHcC-HHHHHHHHHHHHH--HHHHHHHHHHheeecCCCC---CCCcccCCchH
Confidence 113333444443332 2333333 2333 6667666554442 2333333444566665432 68899999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044157 458 TLSLVIGVAGYIILSEIL 475 (481)
Q Consensus 458 ~~~~~i~~~~~~~~~~~~ 475 (481)
.+++.++..+++++..++
T Consensus 393 ~~~~~~~~~~~~~~~~~~ 410 (445)
T PRK11357 393 MTTLAIASSLILVASTFV 410 (445)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999998887777665433
No 26
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.95 E-value=7.9e-25 Score=230.66 Aligned_cols=376 Identities=16% Similarity=0.164 Sum_probs=259.9
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPA-VTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAM 164 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~-~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~ 164 (481)
.+|+++.++.+++.+|++||+|++.+|. .++.+|. .+++..++++++.+..+++++|++.++|. .++.+++++
T Consensus 10 ~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~P~-----~Gg~~~~~~ 83 (452)
T TIGR01773 10 LPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVANPD-----TGSFSTYAD 83 (452)
T ss_pred HhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCHHHHHH
Confidence 4778999999999999999999999996 4566775 57778888999999999999999999984 457899999
Q ss_pred HHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHH
Q 044157 165 RTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-IPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIIS 243 (481)
Q Consensus 165 ~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~ 243 (481)
+.+||+.+++.+|.+++.......+.....+++++.+++ .|.|...+.+.+++..++++|. |..+++|.+.+..+++.
T Consensus 84 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~n~~gv-~~~~~~~~~~~~~ki~~ 162 (452)
T TIGR01773 84 DAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDIPLWLFSLILTIVLTLTNLYSV-KSYGEFEFWFALIKVIA 162 (452)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHH
Confidence 999999999999999887666656666667777777664 5667666666666777899998 89999999988887775
Q ss_pred HHHHHHHh----c---Cccc---ccccc------cccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHH
Q 044157 244 FTALVFVA----S---GDLQ---WNALL------KANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGT 307 (481)
Q Consensus 244 l~iii~~~----~---~~~~---~~~l~------~~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~ 307 (481)
++.+++.+ . +..+ .++.. +.++.++..++....++|.+.+....+.+|++|++|++||++..+.
T Consensus 163 l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~ 242 (452)
T TIGR01773 163 IIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVI 242 (452)
T ss_pred HHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHHHH
Confidence 54443321 1 1111 11211 1123356778888899999999999999999888899999999888
Q ss_pred HHHHHHHHHHHHHHHhcccccccc--C-CCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC---
Q 044157 308 SIPLGLFLVWNAVILGSISGLEMS--S-GQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLK--- 381 (481)
Q Consensus 308 ~i~~v~Yll~~~~v~G~~~~~~~~--~-~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~--- 381 (481)
....++|++......+..|.++.. + .+..+..+... .++...++..+..++.+++.++...+..|.+...-+
T Consensus 243 ~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g--~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~a~ardg~ 320 (452)
T TIGR01773 243 WRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLG--IPHAKLIMDFVVLTAVLSCLNSALYTTSRMLYSLAERGD 320 (452)
T ss_pred HHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 888999998777777777754321 1 12222222221 355566777777788888888877777765533222
Q ss_pred ------CCCCCCCcchhhHhh--HHHHHHHH---hCch-HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 044157 382 ------LPSGQSSPQPYLLTL--IPPLVLSL---LDPE-IFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIP 449 (481)
Q Consensus 382 ------~~~~~~r~~~~~l~~--~~~llia~---~~P~-~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~ 449 (481)
+.|+ ++.+...+.+ +..++... ..++ .|..+.+..+... .+.+++.++.+++.|++.|+.+.+.+
T Consensus 321 lP~~~~~v~~-~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~--~~~y~~~~~~~i~~r~~~~~~~~~~~ 397 (452)
T TIGR01773 321 APRVFMKLNK-KGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIA--LLVYLVIAVSQLRMRKKLKANGEAIK 397 (452)
T ss_pred cCHHHHhhCC-CCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 2222 2334333222 22222111 2232 2455555555443 35666677778888877665422446
Q ss_pred ccccCchHHHHHHHHHHHHHHHHH
Q 044157 450 RIVPGGKLTLSLVIGVAGYIILSE 473 (481)
Q Consensus 450 ~~vpg~~~~~~~~i~~~~~~~~~~ 473 (481)
++.|++|+.+++.++...++++..
T Consensus 398 ~~~~~~p~~~~~~~~~~~~~~~~~ 421 (452)
T TIGR01773 398 IRMWLYPWLTWLVIIFICGILVSM 421 (452)
T ss_pred ccCCCccHHHHHHHHHHHHHHHHH
Confidence 788999999988766655555443
No 27
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.95 E-value=6.6e-26 Score=230.14 Aligned_cols=371 Identities=11% Similarity=0.146 Sum_probs=269.9
Q ss_pred cCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHH--
Q 044157 87 RESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAM-- 164 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~-- 164 (481)
+++.+..++..++...++|+|+|++|.+++++|++.|.+...+.+.++.|+...+.++.....+..++...+|.+.++
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 456889999999999999999999999999999999999999999999999999999988776543333345555554
Q ss_pred --------HHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc--Cch----HHHHHHHHHHHHHHHhhChhhHHH
Q 044157 165 --------RTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG--IPL----WESATLFSLILGGLCYFGSQRFIG 230 (481)
Q Consensus 165 --------~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~--lp~----~~~~i~~~li~~~i~~lg~~k~~~ 230 (481)
+.+|++++++++....+.++|.|.+|.+..++.++++++ .+. .....+......++++. |.+.
T Consensus 124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~I---r~Lk 200 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLI---RNLK 200 (449)
T ss_pred HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHH---HhhH
Confidence 567899999999999999999999999999999999885 222 22222222223333333 5555
Q ss_pred hHHHHHHHHH---HHHHHHHHHHhcCcc-ccccccc-ccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHH---HH
Q 044157 231 AANGALVVGI---IISFTALVFVASGDL-QWNALLK-ANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVR---TA 302 (481)
Q Consensus 231 ~~~~i~~~~~---i~~l~iii~~~~~~~-~~~~l~~-~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~---ka 302 (481)
++.-+...+= ++.++++....+.+. +.+.+.. .+|.+.+..+++..|||.+.+++-.+.++| ++|++++ ++
T Consensus 201 ~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~M-k~P~~F~g~~gV 279 (449)
T KOG1304|consen 201 ILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSM-KKPQKFPGPFGV 279 (449)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcc-cChhhcCCccch
Confidence 5555544433 333333333333322 2333322 257788899999999999999988899999 4789999 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccCCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCC
Q 044157 303 IVVGTSIPLGLFLVWNAVILGSISGLEMSSGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKL 382 (481)
Q Consensus 303 i~~g~~i~~v~Yll~~~~v~G~~~~~~~~~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~~ 382 (481)
+..++.+++++|+. +..+||+.+++..++.+ .-++ +..++...+.++..+++.-++....+...+.+++.+++
T Consensus 280 Ln~~M~~V~~ly~~--~Gf~GYl~fG~~v~~sI---TLNL--P~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~ 352 (449)
T KOG1304|consen 280 LNLGMGIVTLLYIF--LGFFGYLAFGDDVKGSI---TLNL--PQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRK 352 (449)
T ss_pred HHHHHHHHHHHHHH--HHHHHHhhccccccceE---EecC--CccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHH
Confidence 99999999999987 78899988865332222 1123 23778888999999999999988888888888775443
Q ss_pred CCC--CCCc---chhhHhhHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccCchH
Q 044157 383 PSG--QSSP---QPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGKL 457 (481)
Q Consensus 383 ~~~--~~r~---~~~~l~~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~vpg~~~ 457 (481)
+.+ ++++ ..|...++.+..+|.++|+ ++..++++|+++++.+.+++|.++.++..+.+.. ..++. ..+
T Consensus 353 k~~~~~~~~~~~~~R~~lVllt~~iA~~iPn-L~~fisLVGs~~~s~L~li~P~liel~~~~~~~~----~~~~~--~~~ 425 (449)
T KOG1304|consen 353 KFSENRKKLLEYALRVFLVLLTFLIAVAVPN-LALFISLVGSVSCSLLALIFPPLIELITFYPEGK----GRFMW--KLI 425 (449)
T ss_pred hcCcchhHHHHHHHHHHHHHHHHHHHHHCCc-HHhhHHHHHHHHHHHHHHHccHHHHHHHhccccc----Cceeh--HHH
Confidence 321 2222 2356667788899999998 9999999999999999999999999887654421 11221 123
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044157 458 TLSLVIGVAGYIILSEIL 475 (481)
Q Consensus 458 ~~~~~i~~~~~~~~~~~~ 475 (481)
...+.+++|++..+..-+
T Consensus 426 ~ni~l~~~G~~~~v~Gty 443 (449)
T KOG1304|consen 426 KNIVLIVFGVFGFVYGTY 443 (449)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456666666666555333
No 28
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.95 E-value=1.4e-24 Score=228.13 Aligned_cols=365 Identities=18% Similarity=0.198 Sum_probs=255.6
Q ss_pred HHHHHHHhHHHhHHHH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChhhhHHHH
Q 044157 98 LVAGTTVGAGILAIPA-VTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIAS 176 (481)
Q Consensus 98 ~iigt~IGaGIL~LP~-~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~~~~~~~ 176 (481)
+.+|++||+|++..|. +++++|. .+++..++++++.+..+++++|++.++|+ .++.++++++.+||..+++++
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~P~-----~Gg~y~y~~~~~G~~~gf~~g 75 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVATPD-----TGSFSTYADKAIGRWAGYTIG 75 (446)
T ss_pred eeecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHcChHHHHHHH
Confidence 4679999999999988 5667785 57788999999999999999999999985 457999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHhHhhhhhc-CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHHHHHHHHHhc---
Q 044157 177 WSYIFIHYTLLVAYVARSSDILTNFLG-IPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTALVFVAS--- 252 (481)
Q Consensus 177 ~~~~~~~~~~~~ay~~~~g~~l~~~~~-lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~l~iii~~~~--- 252 (481)
|.+++.......+.....+.+++.+.+ .|.+.....+.++++.+|++|. |..+++|.+.+..+++.++.+++.+.
T Consensus 76 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lN~~gv-~~~~~i~~~~~~~ki~~li~~ii~~~~~~ 154 (446)
T PRK10197 76 WLYWWFWVLVIPLEANIAAMILHSWVPGIPIWLFSLVITLALTGSNLLSV-KNYGEFEFWLALCKVIAILAFIFLGAVAI 154 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHhh-HHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999876554444444444555555543 5666666666677788899998 89999999999988776665554321
Q ss_pred Cc-c---cccc---------cccccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHHHHHHHHH
Q 044157 253 GD-L---QWNA---------LLKANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNA 319 (481)
Q Consensus 253 ~~-~---~~~~---------l~~~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v~Yll~~~ 319 (481)
.. . +..+ ..+.++.++..++...+++|.+.+.+....+|+|||+|++||++..+.....++|++..+
T Consensus 155 ~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~ 234 (446)
T PRK10197 155 SGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIF 234 (446)
T ss_pred cCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11 0 1111 112234567788888899999999999999999888899999999999999999999878
Q ss_pred HHHhccccccccCC---CcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC---------CCCCCC
Q 044157 320 VILGSISGLEMSSG---QIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLK---------LPSGQS 387 (481)
Q Consensus 320 ~v~G~~~~~~~~~~---~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~---------~~~~~~ 387 (481)
+..+..|+++...+ +.....+.. ..++...+++....++..++.++..++..|.+...-+ +.+ ++
T Consensus 235 ~~~~~~p~~~~~~~~~~~~~~~~~~~--g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~~~~~-~~ 311 (446)
T PRK10197 235 VVVALIPWNMPGLKAVGSYRSVLELL--NIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVMGKIN-RS 311 (446)
T ss_pred HHheecCcCcccccccCcHHHHHHHc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-cC
Confidence 88888887642111 111222222 2355667777777788888888888887776643322 112 22
Q ss_pred CcchhhHhhH--HHHH---HHHhCch-HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccCchHHHHH
Q 044157 388 SPQPYLLTLI--PPLV---LSLLDPE-IFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGKLTLSL 461 (481)
Q Consensus 388 r~~~~~l~~~--~~ll---ia~~~P~-~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~vpg~~~~~~~ 461 (481)
+.+...+.+. ..++ .....|+ .|+.++++.+.... +.+.++++.+++.||+.++...+++||.|++|+.+++
T Consensus 312 ~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~l--i~y~~~~~a~i~lr~~~~~~~~~~~~~~~~~p~~~~~ 389 (446)
T PRK10197 312 KTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIAL--LVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWL 389 (446)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCCCCcCCCcchHHHH
Confidence 3343332221 1111 1122333 37777777776663 5666777888888775322223779999999999999
Q ss_pred HHHHHHHHHHHHH
Q 044157 462 VIGVAGYIILSEI 474 (481)
Q Consensus 462 ~i~~~~~~~~~~~ 474 (481)
.++...++++...
T Consensus 390 ~i~~~~~~~~~~~ 402 (446)
T PRK10197 390 VIGFITFVLVVML 402 (446)
T ss_pred HHHHHHHHHHHHH
Confidence 8777666655433
No 29
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.95 E-value=2.6e-26 Score=234.76 Aligned_cols=379 Identities=14% Similarity=0.136 Sum_probs=270.1
Q ss_pred hhhccCCCcHHHHHHHHHHHHHhHHHhHHHHHH-HhhchHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHH
Q 044157 83 ATLKRESGSLSSAIFLVAGTTVGAGILAIPAVT-QEAGFLA-SAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLV 160 (481)
Q Consensus 83 ~~~~~~~~s~~~a~~~iigt~IGaGIL~LP~~~-a~~G~~~-~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~ 160 (481)
+...+|+.|.+.++.+++|++||+|++..|... +++|-.+ +++..+++++++..++++++|+....|+ .++++
T Consensus 7 ~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipk-----sGgd~ 81 (479)
T KOG1287|consen 7 EVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPK-----SGGDY 81 (479)
T ss_pred cccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccC-----CCcch
Confidence 334578899999999999999999999999865 4555443 5667889999999999999999999996 34678
Q ss_pred HHHHHHhChhhhHHHHHHHHHHHHHHH-HHHHHHhHhH-hhhhhc---CchHH---HHHHHHHHHHHHHhhChhhHHHhH
Q 044157 161 SMAMRTIGTVGVQIASWSYIFIHYTLL-VAYVARSSDI-LTNFLG---IPLWE---SATLFSLILGGLCYFGSQRFIGAA 232 (481)
Q Consensus 161 ~~a~~~~G~~~~~~~~~~~~~~~~~~~-~ay~~~~g~~-l~~~~~---lp~~~---~~i~~~li~~~i~~lg~~k~~~~~ 232 (481)
.+..++||+..++...|.-++..+... +.+...+++| ++.+++ .|.+. .+.....++..+++... |...++
T Consensus 82 ayi~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V-~~a~~v 160 (479)
T KOG1287|consen 82 AYISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSV-KWATRV 160 (479)
T ss_pred hhHHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhh-hHHHHH
Confidence 888999999999988887777666654 6667888998 777774 34332 23334445566777777 899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcc---cccccc-----c--ccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHH
Q 044157 233 NGALVVGIIISFTALVFVASGDL---QWNALL-----K--ANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTA 302 (481)
Q Consensus 233 ~~i~~~~~i~~l~iii~~~~~~~---~~~~l~-----~--~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~ka 302 (481)
|.+++..|++++.++++.++... +.+|+. . .+..++..++-...|+|+|.+.+..+.+|++||+|++|||
T Consensus 161 q~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~A 240 (479)
T KOG1287|consen 161 QIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRA 240 (479)
T ss_pred HHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchHH
Confidence 99999999998888887654211 122221 1 1233456777777899999999999999999889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccCCCc--chhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Q 044157 303 IVVGTSIPLGLFLVWNAVILGSISGLEMSSGQI--VDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLL 380 (481)
Q Consensus 303 i~~g~~i~~v~Yll~~~~v~G~~~~~~~~~~~~--~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~ 380 (481)
+.+|+.+++++|++.|++.++.++.+|...++. .+..+... +.....+.+...+..++++++..+.-.|.+....
T Consensus 241 i~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~---G~~~~~ip~~ValS~~G~~n~~ifs~SR~~~~~a 317 (479)
T KOG1287|consen 241 ILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRIL---GVFAWAIPFSVALSLIGSLNSVIFSSSRLFYAGA 317 (479)
T ss_pred HHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhc---cchHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999877432221 22223332 3334777888888888888888888777665443
Q ss_pred CCC---------CCCCCcchhhHhh-HHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCc
Q 044157 381 KLP---------SGQSSPQPYLLTL-IPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPR 450 (481)
Q Consensus 381 ~~~---------~~~~r~~~~~l~~-~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~ 450 (481)
+.. ++++..+...+.+ ....++..+.. ++..++++.+.... ++..+-.+..+++|+|+|+. +||+
T Consensus 318 reG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~-d~~~LIny~sf~~~--l~~~l~~~gll~lR~k~p~~--~rPi 392 (479)
T KOG1287|consen 318 REGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIG-DFDQLINYVSFAYW--LFRGLSMAGLLWLRWKHPPL--PRPI 392 (479)
T ss_pred HccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhCCCC--CCCE
Confidence 332 1222222222222 22223333333 48889998887764 34445555666778888875 9999
Q ss_pred cccCchHHHHHHHHHHHHHHHHHHHHH
Q 044157 451 IVPGGKLTLSLVIGVAGYIILSEILEK 477 (481)
Q Consensus 451 ~vpg~~~~~~~~i~~~~~~~~~~~~~~ 477 (481)
|+|-. .+++.+.+.+.+++.++++.
T Consensus 393 Kvpl~--~p~~~~~~~i~lvvip~~~~ 417 (479)
T KOG1287|consen 393 KVPLF--IPILFLLICIFLVVIPIISD 417 (479)
T ss_pred eeeee--hHHHHHHHHHHHhheeeeec
Confidence 99987 56666666666665555443
No 30
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.95 E-value=2.9e-24 Score=225.90 Aligned_cols=369 Identities=13% Similarity=0.124 Sum_probs=245.8
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMR 165 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~ 165 (481)
++|++|.++++++.+|++||+|++.+|..+++.|. +.+...+++++.....++.++|++.++|+ .++.+.++++
T Consensus 6 ~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~P~-----aGG~y~~~~~ 79 (445)
T PRK10644 6 DAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLDPS-----PGGSYAYARR 79 (445)
T ss_pred cCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----CCChhHHHHH
Confidence 56789999999999999999999999998777663 35566777777888899999999999995 4478889999
Q ss_pred HhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcC-c-hHH---HHHHHHHHHHHHHhhChhhHHHhHHHHHHHHH
Q 044157 166 TIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGI-P-LWE---SATLFSLILGGLCYFGSQRFIGAANGALVVGI 240 (481)
Q Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l-p-~~~---~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~ 240 (481)
.+||..+++++|.+++.......+......++...+++. + .+. ....+.++++.+|.+|. |..+++|++.+..+
T Consensus 80 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~gv-k~~~~i~~i~~~~~ 158 (445)
T PRK10644 80 CFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPLVLTITCVVVLWIFVLLNIVGP-KMITRVQAVATVLA 158 (445)
T ss_pred HcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHH
Confidence 999999999999988765544455444455666655542 1 222 22333345667888998 89999999999888
Q ss_pred HHHHHHHHHHhcCccccccccc----c---cccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHHH
Q 044157 241 IISFTALVFVASGDLQWNALLK----A---NFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGL 313 (481)
Q Consensus 241 i~~l~iii~~~~~~~~~~~l~~----~---~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v~ 313 (481)
++.+++++..+....+.++..+ . ++..+..++...+++|.+.+....+.+|+||++|++||++..+..+++++
T Consensus 159 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~ 238 (445)
T PRK10644 159 LIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVC 238 (445)
T ss_pred HHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHH
Confidence 7766655554432222222111 1 12344556777889999999999999999888899999999999999999
Q ss_pred HHHHHHHHHhcccccccc--CCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHH----Hh-----hcCC
Q 044157 314 FLVWNAVILGSISGLEMS--SGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFL----AD-----LLKL 382 (481)
Q Consensus 314 Yll~~~~v~G~~~~~~~~--~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l----~~-----~~~~ 382 (481)
|++...+..+..|.++.. +.+..+..+... +++...++.+...++..++..+......|.. +| .+.+
T Consensus 239 Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~--g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~lP~~~~~ 316 (445)
T PRK10644 239 YVLSSTAIMGMIPNAALRVSASPFGDAARMAL--GDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFAR 316 (445)
T ss_pred HHHHHHHHHhCCCHHHHhcCCChHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHh
Confidence 999988888888876532 233334333332 3445555555555666666655555544433 22 1222
Q ss_pred CCCCCCcchhhHhh--HHHHHHH--HhCch---HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccCc
Q 044157 383 PSGQSSPQPYLLTL--IPPLVLS--LLDPE---IFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGG 455 (481)
Q Consensus 383 ~~~~~r~~~~~l~~--~~~llia--~~~P~---~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~vpg~ 455 (481)
.++ ++.+...+.+ +...++. ...|+ .|+.+.++.+... .+.+.+++...++.|+|+++ ++.|++
T Consensus 317 v~~-~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~~~~~l~~~~~~------~~~p~~ 387 (445)
T PRK10644 317 VNK-AGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFT--LVPYLYTCAALLLLGHGHFG------KARPAY 387 (445)
T ss_pred hCc-CCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcCCc------ccccch
Confidence 232 2334332222 2222222 22342 2555555443333 46777888888888877653 234677
Q ss_pred hHHHHHHHHHHHHHHHH
Q 044157 456 KLTLSLVIGVAGYIILS 472 (481)
Q Consensus 456 ~~~~~~~i~~~~~~~~~ 472 (481)
++.+++.++..+++++.
T Consensus 388 ~~~~~~~~~~~~~~~~~ 404 (445)
T PRK10644 388 LAVTLIAFVYCIWAVVG 404 (445)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 88888887777666543
No 31
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=99.95 E-value=1e-29 Score=263.93 Aligned_cols=342 Identities=17% Similarity=0.234 Sum_probs=255.3
Q ss_pred CCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHh
Q 044157 88 ESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTI 167 (481)
Q Consensus 88 ~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~ 167 (481)
+|+|++++.++++++++|+|+|++|+++++.||+.|.+++++.+.++.|+...+.+++...++ +++..+|.|++++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~--~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPN--GTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhcccccccc--ccccccccccccccc
Confidence 578999999999999999999999999999999999999999999999999999999987641 124679999999999
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcC-------chHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHH
Q 044157 168 GTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGI-------PLWESATLFSLILGGLCYFGSQRFIGAANGALVVGI 240 (481)
Q Consensus 168 G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l-------p~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~ 240 (481)
||+++.++.+++.+.+++.+++|.+..+|.+.++++. +...+.+++.++..++.+. |..+.+......+.
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~---~~l~~l~~~s~~~~ 155 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFL---KNLKSLRYLSILGL 155 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccccccccccccccccccccccccc---chhhHHHHHhhhhh
Confidence 9999999999999999999999999999998887642 2222223333333333332 55666665555544
Q ss_pred HHHHH---HHHHHhcCc--ccccccc------cccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHH---HHHHHH
Q 044157 241 IISFT---ALVFVASGD--LQWNALL------KANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVR---TAIVVG 306 (481)
Q Consensus 241 i~~l~---iii~~~~~~--~~~~~l~------~~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~---kai~~g 306 (481)
+..+. +.+...... .+.++.. ..++.+++.+++++.|+|.+|.++|++.+||+ ++++++ |+...+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~-~~~~~~~~~~~~~~s 234 (409)
T PF01490_consen 156 FSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMK-DPSKFKKMKKVLSIS 234 (409)
T ss_pred hccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeecc-CCccccccceeeeeh
Confidence 44332 111111111 1111111 12345788999999999999999999999996 455544 999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccccCCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCC---
Q 044157 307 TSIPLGLFLVWNAVILGSISGLEMSSGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLP--- 383 (481)
Q Consensus 307 ~~i~~v~Yll~~~~v~G~~~~~~~~~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~~~--- 383 (481)
+.++.++|++ .++.|++.+++..+ ++.+..+.. +++...+++++..+.+..+++....+..+.+++.+...
T Consensus 235 ~~~~~~~y~~--~g~~gy~~fg~~~~---~~il~n~~~-~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~ 308 (409)
T PF01490_consen 235 MIICFIIYLL--FGIFGYLAFGDSVQ---GNILLNLPN-DDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAAS 308 (409)
T ss_pred hhhhhHHhhh--hhhcccceeeeeec---chhhhcCCC-cccccccccccchhhhhhccccccchhHhhhhhheeccccc
Confidence 9999999987 67778776653211 344555543 33566777888888888899888889888888765431
Q ss_pred ------CC-C---CCcchhhHhhHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCC
Q 044157 384 ------SG-Q---SSPQPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSS 442 (481)
Q Consensus 384 ------~~-~---~r~~~~~l~~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~ 442 (481)
++ . .|...+....+.+.++|..+|+ +.++++++|+++...+.+++|++++++.+++++
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~-~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~ 376 (409)
T PF01490_consen 309 SRDSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPN-FGDIISLVGALFGSFISFILPALLYLKLFKRKR 376 (409)
T ss_pred cccccccccccceeeeeeecchhhhhhhhhhhccc-hhhhhcccchHHHHhHHHHHHHHHHHHhhcccc
Confidence 11 1 1233345566778899999997 899999999999999999999999999887764
No 32
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.95 E-value=4.8e-24 Score=226.25 Aligned_cols=381 Identities=13% Similarity=0.090 Sum_probs=255.3
Q ss_pred cCCCcHHHHHHHHHHHHHhHHHhHHHH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHH
Q 044157 87 RESGSLSSAIFLVAGTTVGAGILAIPA-VTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMR 165 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaGIL~LP~-~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~ 165 (481)
+|+++.++..++.+|++||+|++..|. .++.+|....++..++++++.+..+++++|++.++|++ +++|+.++++
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~----gG~~~~~~~~ 76 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVV----SGSFATYASR 76 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----CCCHHHHHHH
Confidence 467999999999999999999998876 45566744446778888889999999999999999842 4579999999
Q ss_pred HhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHHH
Q 044157 166 TIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-IPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISF 244 (481)
Q Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~l 244 (481)
.+||..+++++|.+++.......+.....+.+++.+.+ .+.+.+..++.++...+|++|. |..+++|.+.+..++..+
T Consensus 77 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~gv-~~~~~~~~~~~~~ki~~l 155 (478)
T TIGR00913 77 FVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKVNPAVWIAIFYVFIVIINLFGV-KGYGEAEFWFSSIKILAI 155 (478)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHH
Confidence 99999999999999887665556666666666665543 4444444455556677899998 899999999887776654
Q ss_pred HHHHHHh----cCcc---c---ccc------cccc----cccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHH
Q 044157 245 TALVFVA----SGDL---Q---WNA------LLKA----NFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIV 304 (481)
Q Consensus 245 ~iii~~~----~~~~---~---~~~------l~~~----~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~ 304 (481)
+.+++.+ ..+. + ..+ +.+. ++.++..++....++|.+.+....+.+|.|+++|++||++.
T Consensus 156 ~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~ 235 (478)
T TIGR00913 156 IGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKSIPRAAK 235 (478)
T ss_pred HHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhHHHHHHH
Confidence 4433321 1111 0 000 1111 13345677777889999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccc---cCC----CcchhHHH-hhh-cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 044157 305 VGTSIPLGLFLVWNAVILGSISGLEM---SSG----QIVDPIQQ-LRS-SNGAVGPIIDVFSFLAIATSYIGFILGLSDF 375 (481)
Q Consensus 305 ~g~~i~~v~Yll~~~~v~G~~~~~~~---~~~----~~~~~l~~-l~~-~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~ 375 (481)
.+..++.++|++...+..+..|.++. ... ....+... ... ..++...++.++..++..++.++...+..|.
T Consensus 236 ~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~ 315 (478)
T TIGR00913 236 RTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANSSLYASSRT 315 (478)
T ss_pred HHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999876666666665431 100 00122211 111 1355666777778888888888887777776
Q ss_pred HHhhcC---------CCCCCCCcchhhHhh--HHHHHHHHh---Cc-hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 044157 376 LADLLK---------LPSGQSSPQPYLLTL--IPPLVLSLL---DP-EIFFKALDFAGTYGVLVLFGILPAVMSWSDRYS 440 (481)
Q Consensus 376 l~~~~~---------~~~~~~r~~~~~l~~--~~~llia~~---~P-~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~ 440 (481)
+...-+ +.++ ++.+...+.+ +..++.... .+ +.|..+.++.+... .+.++++++.+++.||+
T Consensus 316 l~a~ardg~lP~~f~k~~~-~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--~i~y~~~~~~~i~~r~~ 392 (478)
T TIGR00913 316 LYALAHQGLAPKIFAYVDR-RGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSG--FFTWMCICLSHIRFRKA 392 (478)
T ss_pred HHHHHhCCcccHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 533222 1122 2334332222 222221111 12 22555555554433 45677778888877764
Q ss_pred CCC---CCCCCCccccCchHHHHHHHHHHHHHHHHHHH
Q 044157 441 SSS---PSMTIPRIVPGGKLTLSLVIGVAGYIILSEIL 475 (481)
Q Consensus 441 ~~~---~~~~~~~~vpg~~~~~~~~i~~~~~~~~~~~~ 475 (481)
.++ ..++||||+|++|+.+++.++...++++...+
T Consensus 393 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (478)
T TIGR00913 393 MKAQGRSLDELPYKSQTGPYGSYYALFFNILILIAQGY 430 (478)
T ss_pred HHhcCCCcccCCccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 221 12378999999999999988877766655433
No 33
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.94 E-value=5.1e-24 Score=223.38 Aligned_cols=281 Identities=15% Similarity=0.132 Sum_probs=210.0
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMR 165 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~ 165 (481)
++|+++.++++++++|++||+|++.+|..+++.|. ..+...+++++.+...+++++|++.++|+ .++.++++++
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~-~~i~~wli~~~~~l~~al~~aEL~s~~P~-----~GG~y~y~~~ 76 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLASIGS-IAIWGWIISIIGAMSLAYVYARLATKNPQ-----QGGPIAYAGE 76 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----CCChhHHHHH
Confidence 47889999999999999999999999999888774 36677888888889999999999999995 3478899999
Q ss_pred HhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-C----chHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHH
Q 044157 166 TIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-I----PLWESATLFSLILGGLCYFGSQRFIGAANGALVVGI 240 (481)
Q Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l----p~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~ 240 (481)
+|+..+++++|.++...+....++....++++..+++ . +.....+.+..+++.++..|. |..+++|.+.+..+
T Consensus 77 -~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~~~~~~i~~~~~~ln~~gv-k~~~~i~~i~~~~~ 154 (435)
T PRK10435 77 -ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAGIACIAIVWVFTFVNMLGG-TWVSRLTTIGLVLV 154 (435)
T ss_pred -HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHH
Confidence 8999999999998876655556665666677776664 1 112223333345667888888 89999999888777
Q ss_pred HHHHHHHHHHhcCcccccccc-------cccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHHH
Q 044157 241 IISFTALVFVASGDLQWNALL-------KANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGL 313 (481)
Q Consensus 241 i~~l~iii~~~~~~~~~~~l~-------~~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v~ 313 (481)
++.++.+++.+..+.+.++.. +.++.++..++...+++|.+.+.+....+|+|||+|++||++..+..+++++
T Consensus 155 li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~il 234 (435)
T PRK10435 155 LIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGII 234 (435)
T ss_pred HHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHH
Confidence 665554444443333322211 1124467788888899999999999999999877899999999999999999
Q ss_pred HHHHHHHHHhcccccccc--CCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 044157 314 FLVWNAVILGSISGLEMS--SGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFL 376 (481)
Q Consensus 314 Yll~~~~v~G~~~~~~~~--~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l 376 (481)
|++...+..+..|+++.. +++..+.++... +++...+++++..++.+++.++..+...|..
T Consensus 235 Yil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~--g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~ 297 (435)
T PRK10435 235 YIAATQVISGMFPASVMAASGAPFAISASTIL--GNWAAPLVSAFTAFACLTSLGSWMMLVGQAG 297 (435)
T ss_pred HHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHh--chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988999999887632 233444444332 4666777777777777777777666555443
No 34
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.94 E-value=1.6e-23 Score=221.94 Aligned_cols=370 Identities=14% Similarity=0.123 Sum_probs=247.7
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFL-ASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAM 164 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~-~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~ 164 (481)
++|++|.++++++.+|++||+|++.+|...++.|-. ..++..++++++....+++++|++.++|++ .++.+++++
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~----sGG~y~y~~ 80 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPEL----DGGIYAYAR 80 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC----CCChhhhHH
Confidence 367799999999999999999999999987654433 345667888888889999999999999841 357888999
Q ss_pred HHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-C---ch---HHHHHHHHHHHHHHHhhChhhHHHhHHHHHH
Q 044157 165 RTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-I---PL---WESATLFSLILGGLCYFGSQRFIGAANGALV 237 (481)
Q Consensus 165 ~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l---p~---~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~ 237 (481)
+.+||+.+++.+|.+++.......++.....+++..+++ . +. +...+.+.+++..+++.|. |..+++|.+.+
T Consensus 81 ~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi-~~~~~i~~~~~ 159 (473)
T TIGR00905 81 EGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGV-RQAAFINTITT 159 (473)
T ss_pred hHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHH
Confidence 999999999999998776555555555555566666553 1 11 2333444455667888898 89999999999
Q ss_pred HHHHHHHHHHHHHhcCcccccc----cccc-------cccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHH
Q 044157 238 VGIIISFTALVFVASGDLQWNA----LLKA-------NFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVG 306 (481)
Q Consensus 238 ~~~i~~l~iii~~~~~~~~~~~----l~~~-------~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g 306 (481)
..+++.++++++.+....+.++ ..+. ++..+..++...+++|.+.+....+.+|.|| +|++||++..+
T Consensus 160 ~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~ 238 (473)
T TIGR00905 160 IAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLG 238 (473)
T ss_pred HHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchHHHHHH
Confidence 8887766555544321111111 1110 2234556677789999999999999999987 99999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccccccc--CCC-cchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh----
Q 044157 307 TSIPLGLFLVWNAVILGSISGLEMS--SGQ-IVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADL---- 379 (481)
Q Consensus 307 ~~i~~v~Yll~~~~v~G~~~~~~~~--~~~-~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~---- 379 (481)
..++.++|++.+.+..+..|.++.. +++ ..+..+... +++...++.+...++..++.++...+..|.+...
T Consensus 239 ~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~--g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~amardg 316 (473)
T TIGR00905 239 TLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIV--GKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAAKDG 316 (473)
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999888888888876532 223 233333332 3556667777777888888888877777655332
Q ss_pred -----cCCCCCCCCcchhhHhh--HHHH--HHHHhC-chHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCC
Q 044157 380 -----LKLPSGQSSPQPYLLTL--IPPL--VLSLLD-PEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIP 449 (481)
Q Consensus 380 -----~~~~~~~~r~~~~~l~~--~~~l--lia~~~-P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~ 449 (481)
+.+.|++ +.+...+++ +... .+.... .+.|..+.++.+... .+.+.++++..++.|++++.. +
T Consensus 317 ~lP~~~~~v~~~-~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~--~i~y~~~~~a~~~lr~~~~~~--~-- 389 (473)
T TIGR00905 317 LFPKIFGRVNKN-GAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMI--LVPYLLSAAYLLKLAKVGTYP--K-- 389 (473)
T ss_pred ChhHHHHhhCcc-CCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCcc--c--
Confidence 2222332 444433322 1111 112222 234666666655444 456777788888887765211 1
Q ss_pred ccccCchHHHHHHHHHHHHHH
Q 044157 450 RIVPGGKLTLSLVIGVAGYII 470 (481)
Q Consensus 450 ~~vpg~~~~~~~~i~~~~~~~ 470 (481)
.+.|.+++.+.+.++...+++
T Consensus 390 ~~~~~~~~~~~l~~~~~~~~~ 410 (473)
T TIGR00905 390 IKNRKALIVGVIACVYSIWLL 410 (473)
T ss_pred cccchHHHHHHHHHHHHHHHH
Confidence 233455666666665555444
No 35
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.94 E-value=7e-23 Score=216.74 Aligned_cols=344 Identities=14% Similarity=0.137 Sum_probs=234.3
Q ss_pred CCCcHHHHHHHHHHHHHhHHHhHHHHHHH-hhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHH
Q 044157 88 ESGSLSSAIFLVAGTTVGAGILAIPAVTQ-EAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRT 166 (481)
Q Consensus 88 ~~~s~~~a~~~iigt~IGaGIL~LP~~~a-~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~ 166 (481)
|++|.++++++.+|++||+|++.+|...+ .+|....++..+++++.....+++++|++.++|+. +++.++++++.
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~----gGG~y~y~~~~ 76 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPEL----DGGVYSYAKAG 76 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC----CCChhhhHHhH
Confidence 57899999999999999999999998755 55543345667888888889999999999999842 23789999999
Q ss_pred hChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-C----ch--HHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHH
Q 044157 167 IGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-I----PL--WESATLFSLILGGLCYFGSQRFIGAANGALVVG 239 (481)
Q Consensus 167 ~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l----p~--~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~ 239 (481)
|||+.+++.+|.+++.......++.....++++.+++ . +. +........++..+++.|. |..+++|.+.+..
T Consensus 77 fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv-~~~~~i~~i~~~~ 155 (468)
T TIGR03810 77 FGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGV-EGAAFINTITTIA 155 (468)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHHHHHHHHHHH
Confidence 9999999999999887655556665555555555443 1 11 2222333334566778888 8999999999999
Q ss_pred HHHHHHHHHHHhcCcccc--------ccccc-cc----ccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHH
Q 044157 240 IIISFTALVFVASGDLQW--------NALLK-AN----FEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVG 306 (481)
Q Consensus 240 ~i~~l~iii~~~~~~~~~--------~~l~~-~~----~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g 306 (481)
+++.++++++.+....+. ++..+ .. +.++..++...+++|.+.+....+.+|.| |+|++||++..+
T Consensus 156 ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k-~~k~ip~ai~~~ 234 (468)
T TIGR03810 156 KLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAE-KRSDVGKATVIG 234 (468)
T ss_pred HHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhcc-CcccchHHHHHH
Confidence 887766655433211111 11100 01 22344667778999999999888888885 589999999999
Q ss_pred HHHHHHHHHHHHHHHHhccccccccC--CC-cchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc---
Q 044157 307 TSIPLGLFLVWNAVILGSISGLEMSS--GQ-IVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLL--- 380 (481)
Q Consensus 307 ~~i~~v~Yll~~~~v~G~~~~~~~~~--~~-~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~--- 380 (481)
..+++++|++...+..|..|.++..+ ++ ..+..+... +++...++.+...++..++.++..++..|.....-
T Consensus 235 ~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~--g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~ardg 312 (468)
T TIGR03810 235 LIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMV--GTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMAKDK 312 (468)
T ss_pred HHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999998888889888765322 22 223333332 46667788888888888899888888777653222
Q ss_pred ------CCCCCCCCcchhhHhh--HHH---HHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCC
Q 044157 381 ------KLPSGQSSPQPYLLTL--IPP---LVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSS 442 (481)
Q Consensus 381 ------~~~~~~~r~~~~~l~~--~~~---llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~ 442 (481)
.+.|+ ++.+...+.+ +.. +++.....+.|..+.++.+... .+.++++++.+++.|+|++
T Consensus 313 ~lP~~f~k~~~-~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~--li~y~~~~~~~~~l~~~~~ 382 (468)
T TIGR03810 313 LMPKYFGKENA-NGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAI--LVPYLWSAAYQVKLSWRGG 382 (468)
T ss_pred CccHHHHhhCC-CCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcC
Confidence 22222 2334333222 111 1111122234666766665544 4577788888888877653
No 36
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.93 E-value=2.9e-23 Score=221.55 Aligned_cols=371 Identities=15% Similarity=0.180 Sum_probs=240.9
Q ss_pred hccCCCcHHHHHHHHHHHHHhHHHhHHHHHH-HhhchHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHH
Q 044157 85 LKRESGSLSSAIFLVAGTTVGAGILAIPAVT-QEAGFLA-SAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSM 162 (481)
Q Consensus 85 ~~~~~~s~~~a~~~iigt~IGaGIL~LP~~~-a~~G~~~-~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~ 162 (481)
..+|+.+.+++.++.+|++||+|++..|... .++|-.+ .++..++++++.+..+++++|++.++|+ .++.+.+
T Consensus 39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~-----sGG~y~~ 113 (501)
T TIGR00911 39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPK-----SGGEYNY 113 (501)
T ss_pred ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCchhhh
Confidence 3567799999999999999999999998754 4556432 2355677888888999999999999985 4578999
Q ss_pred HHHHhChhhhHHHHHHHHHHHH-HHHHHHHHHhHhHhhh-hhc---CchH---HHHHHHHHHHHHHHhhChhhHHHhHHH
Q 044157 163 AMRTIGTVGVQIASWSYIFIHY-TLLVAYVARSSDILTN-FLG---IPLW---ESATLFSLILGGLCYFGSQRFIGAANG 234 (481)
Q Consensus 163 a~~~~G~~~~~~~~~~~~~~~~-~~~~ay~~~~g~~l~~-~~~---lp~~---~~~i~~~li~~~i~~lg~~k~~~~~~~ 234 (481)
.++.+||..+++.+|..++..+ +.+..+....++++.+ +++ .|.| ...+.+.++++.++++|. |..++++.
T Consensus 114 ~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gv-k~~~~~~~ 192 (501)
T TIGR00911 114 ILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSV-KWATRVQD 192 (501)
T ss_pred HHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHH
Confidence 9999999999999987655333 2233444555666433 332 3333 223334455667888888 89999999
Q ss_pred HHHHHHHHHHHHHHHHhc---Cc-----cccccccc---ccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHH
Q 044157 235 ALVVGIIISFTALVFVAS---GD-----LQWNALLK---ANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAI 303 (481)
Q Consensus 235 i~~~~~i~~l~iii~~~~---~~-----~~~~~l~~---~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai 303 (481)
+.+..+++.++++++.+. .+ .++++..+ .++.++..++...+++|.+.+....+.+|+++|+|++||++
T Consensus 193 i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~iPrAi 272 (501)
T TIGR00911 193 IFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTLPIAI 272 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhhHHHH
Confidence 999888876655544331 11 11111111 12334566778889999999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCC-cc-hhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Q 044157 304 VVGTSIPLGLFLVWNAVILGSISGLEMSSGQ-IV-DPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLK 381 (481)
Q Consensus 304 ~~g~~i~~v~Yll~~~~v~G~~~~~~~~~~~-~~-~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~ 381 (481)
..+..++.++|++.+.+..+..|.++...++ .. +..+... +....++.+...++.+++.++...+..|.+...-+
T Consensus 273 ~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~---g~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~ar 349 (501)
T TIGR00911 273 IISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLL---GVMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGGR 349 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888888888765532211 11 1111111 23344556666666677777777777665533222
Q ss_pred ---------CCCCCCCcchhhHhhHHHH-HHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcc
Q 044157 382 ---------LPSGQSSPQPYLLTLIPPL-VLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRI 451 (481)
Q Consensus 382 ---------~~~~~~r~~~~~l~~~~~l-lia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~ 451 (481)
+.+++++.+...+++...+ ++.....+ +..++++.+... .+.+++..+..+++|+|+|+. +||||
T Consensus 350 dg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~-~~~l~~~~~~~~--~i~y~l~~~a~i~lR~~~p~~--~rp~r 424 (501)
T TIGR00911 350 EGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGD-IYSLINLISFAN--WLFNALAVAGLLWLRYKRPEM--NRPIK 424 (501)
T ss_pred cCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCC-HHHHHHHHHHHH--HHHHHHHHHHHHheeccCCCC--CCCcc
Confidence 1122333343333322111 12223333 555666443322 346666677778889888876 88999
Q ss_pred ccCchHHHHHHHHHHHHHHH
Q 044157 452 VPGGKLTLSLVIGVAGYIIL 471 (481)
Q Consensus 452 vpg~~~~~~~~i~~~~~~~~ 471 (481)
+|+. .+.+.++..+++++
T Consensus 425 ~p~~--~~~l~~~~~~~~~~ 442 (501)
T TIGR00911 425 VPLF--FPVFFLLSCLFLII 442 (501)
T ss_pred CchH--HHHHHHHHHHHHhh
Confidence 9983 44455444444443
No 37
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.93 E-value=3.4e-23 Score=212.83 Aligned_cols=382 Identities=16% Similarity=0.131 Sum_probs=281.0
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHh-HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGIL-AIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAM 164 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL-~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~ 164 (481)
-+|++...+..++-+|+.||+|.+ +.-.+++++|-.+.++..++.+.+.+..+.++.|++..+|. .+++..++.
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~-----sGsF~~ya~ 116 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV-----SGSFSTYAT 116 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCchhhhhh
Confidence 467788899999999999999988 56678899998888899999999999999999999999992 557999999
Q ss_pred HHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc--CchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHH
Q 044157 165 RTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG--IPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIII 242 (481)
Q Consensus 165 ~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~--lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~ 242 (481)
+..++-.++..+|.|++.....+..-+++.+.+++.+++ +|.+.+..+|.+++..+|.++. |..++.+.++...|++
T Consensus 117 rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~V-k~fGE~Efw~s~iKV~ 195 (541)
T COG0833 117 RFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGV-KGFGETEFWFSSIKVL 195 (541)
T ss_pred hhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcc-cccceehHHHHHHHHH
Confidence 999999999999999998877777777788888888873 5888888899888888999998 9999999999998888
Q ss_pred HHHHHHHHh-------cCcccc--ccc------ccccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHH
Q 044157 243 SFTALVFVA-------SGDLQW--NAL------LKANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGT 307 (481)
Q Consensus 243 ~l~iii~~~-------~~~~~~--~~l------~~~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~ 307 (481)
.++.+++.+ .++.+. .+. .+.++.++...+-...|||++.+.+.....|-++|+|.+|||+.-..
T Consensus 196 ~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vf 275 (541)
T COG0833 196 TIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVF 275 (541)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHH
Confidence 766665542 122110 111 11245566677777789999999988778888888899999999999
Q ss_pred HHHHHHHHHHHHHHHhccccccc----------cCCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 044157 308 SIPLGLFLVWNAVILGSISGLEM----------SSGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLA 377 (481)
Q Consensus 308 ~i~~v~Yll~~~~v~G~~~~~~~----------~~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~ 377 (481)
--.+++|++..+++-...|+.+. ..+|...+++... -+.+..+++.+.+.+++++-++..++-.|.+.
T Consensus 276 wRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~G--i~~~~~imNaVIL~svlSa~NS~lYasSR~L~ 353 (541)
T COG0833 276 WRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAG--IPVAASIMNAVILTSVLSAANSGLYASSRMLY 353 (541)
T ss_pred HHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcC--CccchHHHHHHHHHHHHHHhhccchHHHHHHH
Confidence 99999999866666666677541 1112222222221 24566788999999999888888888777765
Q ss_pred hhcC---------CCCCCCCcchhh-Hhh--HHHHHHHHhCch--HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCC
Q 044157 378 DLLK---------LPSGQSSPQPYL-LTL--IPPLVLSLLDPE--IFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSS 443 (481)
Q Consensus 378 ~~~~---------~~~~~~r~~~~~-l~~--~~~llia~~~P~--~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~ 443 (481)
.+-+ +.++++++...+ ++. ....+++....+ .|.-++++.|......|..+ ++.+++.||..+.
T Consensus 354 sLA~~g~APk~f~~~~r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I--~~shirFR~A~~~ 431 (541)
T COG0833 354 SLAKQGKAPKIFAKVDRRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSI--CLSHIRFRRAMKA 431 (541)
T ss_pred HHHhcCCCchHHHhhCCCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 4433 223444443321 111 111223333343 48888888887776555554 6777776653222
Q ss_pred C--C-CCCCccccCchHHHHHHHHHHHHHHHHHHHHH
Q 044157 444 P--S-MTIPRIVPGGKLTLSLVIGVAGYIILSEILEK 477 (481)
Q Consensus 444 ~--~-~~~~~~vpg~~~~~~~~i~~~~~~~~~~~~~~ 477 (481)
. + .+.|||-|.+|+.+++.+++-+++++.+.+..
T Consensus 432 QG~s~~~L~yks~~~p~g~~~~~~~~~li~i~q~y~a 468 (541)
T COG0833 432 QGRSLDELPYKSPFGPYGPIYGLILCILILIGQGYVA 468 (541)
T ss_pred cCCChhhcCccCCCccHHHHHHHHHHHHHHHHcchhe
Confidence 1 1 26799999999999999888888888765543
No 38
>PRK11021 putative transporter; Provisional
Probab=99.92 E-value=1.3e-21 Score=203.60 Aligned_cols=337 Identities=15% Similarity=0.095 Sum_probs=221.7
Q ss_pred CcHHHHHHHHHHHHHhHHHhHHHHHHH-hhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhC
Q 044157 90 GSLSSAIFLVAGTTVGAGILAIPAVTQ-EAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIG 168 (481)
Q Consensus 90 ~s~~~a~~~iigt~IGaGIL~LP~~~a-~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G 168 (481)
.|+|+++++.+|++||+|++.+|.... .+| ..+++..++++++....+++++|++.++|+ .++.+.++++.+|
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG-~~~~~~~~i~~~~~~~~al~~aEl~s~~P~-----aGG~y~y~~~~~G 74 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAG-NNSLWAWPLLILLIFPIAIVFARLGRHFPH-----AGGPAHFVGMAFG 74 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHhHHHHhC
Confidence 478999999999999999999998654 555 357778889999999999999999999995 4578999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCch---HHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHHHH
Q 044157 169 TVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPL---WESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFT 245 (481)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~---~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~l~ 245 (481)
|..+++.+|.++........+......+++...++.+. +...+...+++..++++|. |..++++.+.+..++..+.
T Consensus 75 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv-~~~~~~~~~~~~~~~~i~~ 153 (410)
T PRK11021 75 PRLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGWSSWQLLLAELLTLALLWLLNLRGA-SSSANLQTVIALLIVALVV 153 (410)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999998764333333333334456666665332 3333444556677888998 8999999987755443332
Q ss_pred HHHHHhcCccccccc-----ccccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHHHHHHHHHH
Q 044157 246 ALVFVASGDLQWNAL-----LKANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNAV 320 (481)
Q Consensus 246 iii~~~~~~~~~~~l-----~~~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v~Yll~~~~ 320 (481)
.+. ...+.+.++. .+.+|.++..++...+++|.+.+....+.+|+|||+|++||++..+..++.++|++...+
T Consensus 154 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 154 AIW--WAGDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHH--HHcCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence 222 2222222222 123456677888888999999999999999998888999999999999999999997777
Q ss_pred HHhccccccc--cCCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC---------CCCCCCCc
Q 044157 321 ILGSISGLEM--SSGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLK---------LPSGQSSP 389 (481)
Q Consensus 321 v~G~~~~~~~--~~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~---------~~~~~~r~ 389 (481)
..+..++++. .+.+..+..+... +++...++.+...++.+++.++...+..|.+...-+ +.|+ ++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~--G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~~-~~t 308 (410)
T PRK11021 232 VLHFPAYGDKQAAAASLPGIFVQLF--GGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLSA-RGV 308 (410)
T ss_pred HHhcCCCcchhhccccHHHHHHHHh--CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhcc-CCC
Confidence 6666554432 1122233343332 233445556666677777777766666665533222 2222 233
Q ss_pred chhhHhh--HHHHH---HHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 044157 390 QPYLLTL--IPPLV---LSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYS 440 (481)
Q Consensus 390 ~~~~l~~--~~~ll---ia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~ 440 (481)
+...+.+ +.+++ +......+++.+.+...... .+.+.+.++..++++++
T Consensus 309 P~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~~~l~~~ 362 (410)
T PRK11021 309 PVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIF--VLIYLLCMLAACKLLKG 362 (410)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHHHHHHHHHHHHHhcc
Confidence 3332221 22221 11111223666766655332 45666777777777654
No 39
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.91 E-value=5.7e-21 Score=195.42 Aligned_cols=334 Identities=16% Similarity=0.215 Sum_probs=225.9
Q ss_pred CCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhC
Q 044157 89 SGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIG 168 (481)
Q Consensus 89 ~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G 168 (481)
+.|.+|.+++++++++|+|++.+|..+++.+-.++++..+++++++...+++++|++.++| +.+..++.++.+|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p------~~~~~~~~~~~~G 75 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFP------EKNFSEILSKYLG 75 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHhh
Confidence 5789999999999999999999999877655557888899999999999999999999988 3479999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhh--cCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHHH-H
Q 044157 169 TVGVQIASWSYIFIHYTLLVAYVARSSDILTNFL--GIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISF-T 245 (481)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~--~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~l-~ 245 (481)
|+.+++.++.+...............++.++..+ +.|.+...+.+.+++...+..|. +..+|++.+.++.++..+ .
T Consensus 76 k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp~~~~~l~~l~~~~~~~~~Gi-~~i~r~~~i~~~~~i~~~~~ 154 (359)
T TIGR00912 76 KILGRLLSILFILYFFLIAAYLIRIFADFIKTYLLPRTPIIVIIILIIIVSIYIVRKGI-EVLLRTAEILLIIFLILFIL 154 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999998877665554454566777776544 36767766666666666677787 899999999988877663 4
Q ss_pred HHHHHhcCcccccccccc---cccchhhhh-hHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 044157 246 ALVFVASGDLQWNALLKA---NFEAVPMSI-PIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNAVI 321 (481)
Q Consensus 246 iii~~~~~~~~~~~l~~~---~~~~i~~ai-~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v~Yll~~~~v 321 (481)
++.....++.|++|+.|. ++.+...+. +...++|++.+....+.+++ +|+||.+|+...|..++.++|+++..+.
T Consensus 155 il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~-~~~~~~~k~~~~~~~~~~~ly~~~~~~~ 233 (359)
T TIGR00912 155 VLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLL-SKKKKIKKSIIKAIIIGVLLYILTTFVS 233 (359)
T ss_pred HHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHh-CChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445566677777653 455555444 36778898888877777777 4688999999999999999999999999
Q ss_pred Hhcccccccc--CCCcchhHHHhhhcCCcHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCCCCCcchhhHhh
Q 044157 322 LGSISGLEMS--SGQIVDPIQQLRSSNGAVGP---IIDVFSFLAIATSYIGFILGLSDFLADLLKLPSGQSSPQPYLLTL 396 (481)
Q Consensus 322 ~G~~~~~~~~--~~~~~~~l~~l~~~~~~~~~---iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~~~~~~~r~~~~~l~~ 396 (481)
.+.+|.++.+ ..|..+..+.+.- ++.+.. +....-..+.........+.....+++.++.++ +|..... .
T Consensus 234 i~~lg~~~~~~~~~P~~~~~~~i~~-~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~ 308 (359)
T TIGR00912 234 ISVFGGNVTKNLYWPTLELIKLINI-GDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRK--YSILILP--V 308 (359)
T ss_pred HheecHHHhhhhcccHHHHHHHhhH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--cchhHHH--H
Confidence 9999987643 2333444444322 122222 211222233333333344444455677777643 2322211 1
Q ss_pred HHHHHHHHhCchHHHH---HhhhhHHHHHHHHHHHHHHHHHHH
Q 044157 397 IPPLVLSLLDPEIFFK---ALDFAGTYGVLVLFGILPAVMSWS 436 (481)
Q Consensus 397 ~~~llia~~~P~~f~~---~l~~~G~~~~~~l~~ilP~l~~~~ 436 (481)
.+........|++... ..++.+... ....+++|.++++.
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~P~ll~~i 350 (359)
T TIGR00912 309 LMVIFSISFFPDSSNQLFDYLEFLPIIA-IVFFLLLPLILFII 350 (359)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 1122233345654222 222333332 24566788876554
No 40
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=99.90 E-value=5.4e-22 Score=203.60 Aligned_cols=338 Identities=17% Similarity=0.210 Sum_probs=235.2
Q ss_pred cCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHH
Q 044157 87 RESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRT 166 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~ 166 (481)
.++.+..+++++++++++|+|++++|+++++.|.+.+++++..++.++.++..++.+++++.+ ..+|.+.+++.
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~------~~ty~~l~~~~ 76 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSG------ERTYSSLGDLI 76 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC------CCCHHHHHHHH
Confidence 345689999999999999999999999999999999999999999999999999999999876 23999999999
Q ss_pred hChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc---CchHH----------HHHHHHHHHHHHHhhChhhHHHhHH
Q 044157 167 IGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG---IPLWE----------SATLFSLILGGLCYFGSQRFIGAAN 233 (481)
Q Consensus 167 ~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~---lp~~~----------~~i~~~li~~~i~~lg~~k~~~~~~ 233 (481)
+|+.++............+ +++|.+..+|.+..+.. .+++- +.+....++.++.+. |.++++.
T Consensus 77 ~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~---k~l~~Lk 152 (411)
T KOG1305|consen 77 FGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLL---KNLDSLK 152 (411)
T ss_pred cCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHH---HhhhhHH
Confidence 9999955555543333333 48888888888775542 11111 122222233333332 4455554
Q ss_pred HHHHHHHHH--HHHHHHHH-hcC-c---cccccccccc--ccchhhhhhHHhhhccCcchHHHhHHhhccC-hhhHHHHH
Q 044157 234 GALVVGIII--SFTALVFV-ASG-D---LQWNALLKAN--FEAVPMSIPIIALSFVYQNVVPVLCTNLEGN-LSKVRTAI 303 (481)
Q Consensus 234 ~i~~~~~i~--~l~iii~~-~~~-~---~~~~~l~~~~--~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~-~k~~~kai 303 (481)
.-....... .++.+++. ... . .+..+..+.+ +.+.+.++|+++++|.||.++-.+++|++++ .|++.++.
T Consensus 153 ~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~ 232 (411)
T KOG1305|consen 153 YTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVS 232 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHH
Confidence 433332222 11112111 111 1 1112222222 2578899999999999999988889999754 57899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCCCcchhHHHhhhcCC-----cHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 044157 304 VVGTSIPLGLFLVWNAVILGSISGLEMSSGQIVDPIQQLRSSNG-----AVGPIIDVFSFLAIATSYIGFILGLSDFLAD 378 (481)
Q Consensus 304 ~~g~~i~~v~Yll~~~~v~G~~~~~~~~~~~~~~~l~~l~~~~~-----~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~ 378 (481)
..+...+.++|.. .+..||+.+++.. .+|++....+... +....+......+...+++...+++++.+.+
T Consensus 233 ~~~~~~~~~iy~~--~g~~GYL~Fg~~v---~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~ 307 (411)
T KOG1305|consen 233 NIAIILATLIYLL--TGLFGYLTFGDLV---KGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDE 307 (411)
T ss_pred HHHHHHHHHHHHH--HHHhhhheecccc---hHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 9999999999987 7888888876422 2455544433111 1235677777788888888889998888776
Q ss_pred hcCCCCC-------CCCcchhhHhhHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 044157 379 LLKLPSG-------QSSPQPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYS 440 (481)
Q Consensus 379 ~~~~~~~-------~~r~~~~~l~~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~ 440 (481)
++....+ .++............+.+.++|+ ..+++.++|+++...+.+++|.+.|++.+|+
T Consensus 308 ~~~~~~~~~~~~s~~r~~~itl~ll~~~~l~ai~~p~-i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~ 375 (411)
T KOG1305|consen 308 LLFPYQPGLTSFSGKRHFVITLLLLIFTFLLAIFVPS-IGTIFGFVGATSSTSISFILPALYYLKASKK 375 (411)
T ss_pred HhcccCCCCCCccceehhHHHHHHHHHHHHHHHHhcc-HHHHHHHhhhhhhhhhHHHHHHHhhheeecc
Confidence 5432211 12233344555667889999998 7999999999999999999999888888775
No 41
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.90 E-value=1e-20 Score=212.80 Aligned_cols=348 Identities=11% Similarity=0.099 Sum_probs=234.0
Q ss_pred hhhhccCCCcHHHHHHHH-HHHHHhHHHhH-HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhcccCCCCCC
Q 044157 82 QATLKRESGSLSSAIFLV-AGTTVGAGILA-IPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVN-TMCELGSGGVS 158 (481)
Q Consensus 82 ~~~~~~~~~s~~~a~~~i-igt~IGaGIL~-LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~-~~~~~g~~~~s 158 (481)
+.+.+.++.|+++++++- +++++|+|++. +++..+++|...+++++++++++++.++++++|++.+ .++ .++
T Consensus 70 ~~~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~-----aGG 144 (953)
T TIGR00930 70 KPPAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVK-----GGG 144 (953)
T ss_pred CCCCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-----ccH
Confidence 333456789999999998 99999999996 5567789997778889999999999999999999998 664 456
Q ss_pred HHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcC--------c---hHHHHHHHHHHHHHHHhhChhh
Q 044157 159 LVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGI--------P---LWESATLFSLILGGLCYFGSQR 227 (481)
Q Consensus 159 ~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l--------p---~~~~~i~~~li~~~i~~lg~~k 227 (481)
-+.|..+.||+..++.++|.+++.....+..|+.++++++..+++. + ..+...+..++++.+++.|. |
T Consensus 145 ~Y~yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~l~ll~~In~~Gv-k 223 (953)
T TIGR00930 145 AYYLISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVTVVVLLGISFAGM-E 223 (953)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHHHHHHHHHHHhhH-H
Confidence 8889999999999999999988877777888899999998887631 1 13344455566777889998 9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcC-cc----------ccc----ccccc--c-ccchhhhhhHHhhhccCcchHHHhH
Q 044157 228 FIGAANGALVVGIIISFTALVFVASG-DL----------QWN----ALLKA--N-FEAVPMSIPIIALSFVYQNVVPVLC 289 (481)
Q Consensus 228 ~~~~~~~i~~~~~i~~l~iii~~~~~-~~----------~~~----~l~~~--~-~~~i~~ai~vi~~af~~~~~v~~i~ 289 (481)
...+++.+++..+++.++.+++.++. .. +.+ |..+. + ..+++..+++++.+|.|......+.
T Consensus 224 ~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~s 303 (953)
T TIGR00930 224 WENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANIS 303 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998887776666554321 10 111 11110 1 1125667777778999988888899
Q ss_pred HhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccccC--CCc-c---------------------hhHHHhhhc
Q 044157 290 TNLEGNLSKVRTAIVVGTSIPLGLFLVWNAVILGSISGLEMSS--GQI-V---------------------DPIQQLRSS 345 (481)
Q Consensus 290 ~~~~~~~k~~~kai~~g~~i~~v~Yll~~~~v~G~~~~~~~~~--~~~-~---------------------~~l~~l~~~ 345 (481)
+|+++|+|++||++++++.+++++|++..+++.+..+.+.... +.. . +...... .
T Consensus 304 gElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~-~ 382 (953)
T TIGR00930 304 GDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMS-L 382 (953)
T ss_pred HhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHh-h
Confidence 9998888999999999999999999997665555444322110 000 0 0011111 1
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh-----cC------CCCCCCCcchhhHh--hHHHHHHHHhCchHHHH
Q 044157 346 NGAVGPIIDVFSFLAIATSYIGFILGLSDFLADL-----LK------LPSGQSSPQPYLLT--LIPPLVLSLLDPEIFFK 412 (481)
Q Consensus 346 ~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~-----~~------~~~~~~r~~~~~l~--~~~~llia~~~P~~f~~ 412 (481)
......++.+..+++.+++.++..++..|.+..+ +. +.+++++.+.+.++ .++++++.... +++.
T Consensus 383 ~~~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~--~l~~ 460 (953)
T TIGR00930 383 VSPFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIA--ELNT 460 (953)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHH--hHHH
Confidence 1223456777777888888888888877765322 11 11223344443332 33333333332 2556
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 044157 413 ALDFAGTYGVLVLFGILPAVMSWSDRYS 440 (481)
Q Consensus 413 ~l~~~G~~~~~~l~~ilP~l~~~~~r~~ 440 (481)
+..++..+. .+.+.+-.+..++.|.+
T Consensus 461 ia~lis~~f--Ll~Y~lvnla~~~l~~~ 486 (953)
T TIGR00930 461 IAPIISNFF--LASYALINFSCFHASLL 486 (953)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHhhc
Confidence 666554443 33444445555665543
No 42
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=99.89 E-value=1.8e-22 Score=194.07 Aligned_cols=364 Identities=16% Similarity=0.153 Sum_probs=259.6
Q ss_pred cchhhHHHHHhhcc-cchhhhccCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 044157 66 EQEFEFEFERLFSN-LNQATLKRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEV 144 (481)
Q Consensus 66 ~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el 144 (481)
|.|++.+.++.-+- ++.+....+|.+-|++..++.+++-|-=|++||++....||+ ++.+.+..+.+++||+.++.|+
T Consensus 92 e~pq~~d~~~qg~~~~~G~Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~C 170 (524)
T KOG4303|consen 92 EQPQKDDINKQGEAKDDGHGEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIEC 170 (524)
T ss_pred CCCCCCcccccccccccCCCCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhh
Confidence 33344444444322 233345568899999999999999999999999999999986 7888888888999999999999
Q ss_pred hhhhhcccCC---CCCCHHHHHHHHhChh-hhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-C--chHHHHHHHHHHH
Q 044157 145 NVNTMCELGS---GGVSLVSMAMRTIGTV-GVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-I--PLWESATLFSLIL 217 (481)
Q Consensus 145 ~~~~~~~~g~---~~~s~~~~a~~~~G~~-~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-l--p~~~~~i~~~li~ 217 (481)
.+...+ .|. .+++|.++|...+++. |+..+.+.+.+.+...|+.|++..||.+.+-++ . +..-|..+..+.+
T Consensus 171 LYE~~~-dGevVrvRdsYvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~L 249 (524)
T KOG4303|consen 171 LYENGE-DGEVVRVRDSYVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASL 249 (524)
T ss_pred hccCCC-CCcEEEeehhHHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHH
Confidence 987553 222 3679999999988875 668888999999999999999999999998874 3 3333334444444
Q ss_pred HHHHhhChhhHHHhHHHHHHHHHHHHHHHHHHH---hcCcccccccc-cccccchhhhhhHHhhhccCcchHHHhHHhhc
Q 044157 218 GGLCYFGSQRFIGAANGALVVGIIISFTALVFV---ASGDLQWNALL-KANFEAVPMSIPIIALSFVYQNVVPVLCTNLE 293 (481)
Q Consensus 218 ~~i~~lg~~k~~~~~~~i~~~~~i~~l~iii~~---~~~~~~~~~l~-~~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~ 293 (481)
.+..++...|.+.+++.+.+..-+++=++++.. -..++.|+... ..|.+.++.++++++|+|..|.-+|++...|
T Consensus 250 Lpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM- 328 (524)
T KOG4303|consen 250 LPCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNM- 328 (524)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeecccccccc-
Confidence 455556544778888877777655443333332 23455555443 2356678889999999999999999999999
Q ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcchhH-HHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhH
Q 044157 294 GNLSKVRTAIVVGTSIPLGLFLVWNAVILGSISGLEMSSGQIVDPI-QQLRSSNGAVGPIIDVFSFLAIATSYIGFILGL 372 (481)
Q Consensus 294 ~~~k~~~kai~~g~~i~~v~Yll~~~~v~G~~~~~~~~~~~~~~~l-~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l 372 (481)
++|.++...+-++-..+.++=.+ +..++++++++. ..+.+ .++. +..+..++++|...-.+-||+.-.++.
T Consensus 329 ~~ps~Fn~Ml~WsHIAAaVfK~~--Fg~~~fLTf~~~----TqevItnnLp--~qsfk~~VN~fLV~KALLSYPLPfyAA 400 (524)
T KOG4303|consen 329 KNPSQFNVMLKWSHIAAAVFKVV--FGMLGFLTFGEL----TQEVITNNLP--NQSFKILVNLFLVVKALLSYPLPFYAA 400 (524)
T ss_pred CChhHheeeeehHHHHHHHHHHH--HHHheeeeechh----hHHHHhcCCC--ccchhhhhhHHHHHHHHHcCCchHHHH
Confidence 47889888888887666655544 455666665431 22222 2332 344667788887776666777666666
Q ss_pred HHHHHhh-cCCCC---------CCCCcch-----hhHhhHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 044157 373 SDFLADL-LKLPS---------GQSSPQP-----YLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSD 437 (481)
Q Consensus 373 ~~~l~~~-~~~~~---------~~~r~~~-----~~l~~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~ 437 (481)
.+.+|+- |+-.. +-++.+. ++.+++.+++.|+.+|+ |..+++++|++.+..+.|+.|+++++++
T Consensus 401 velLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPh-f~~LMGl~Gs~TGtmLsFiwP~lFHl~i 479 (524)
T KOG4303|consen 401 VELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPH-FVELMGLVGSITGTMLSFIWPALFHLYI 479 (524)
T ss_pred HHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHH-HHHHHHhhcccccccHHHHHHHHHHHHH
Confidence 6667653 33211 1123333 34556778999999999 9999999999999999999999999887
Q ss_pred hccC
Q 044157 438 RYSS 441 (481)
Q Consensus 438 r~~~ 441 (481)
+.|.
T Consensus 480 k~~~ 483 (524)
T KOG4303|consen 480 KEKT 483 (524)
T ss_pred HHHh
Confidence 6543
No 43
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.89 E-value=1.1e-19 Score=190.09 Aligned_cols=342 Identities=19% Similarity=0.251 Sum_probs=235.1
Q ss_pred CcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhC
Q 044157 90 GSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFM-VVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIG 168 (481)
Q Consensus 90 ~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~-~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G 168 (481)
+|+|++.++.+|.++|+|++..| .++..|.. .++..+++.++. ...++.++|++.+.|+ .++.+.++++.+|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~-----~GG~y~~~~~~~g 73 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPS-----AGGIYVWVSRAFG 73 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTS-----STTHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCC-----cCeeeehhhhccc
Confidence 47899999999999999999999 66666654 555555555555 7889999999988884 5589999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc--C-c----hHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHH
Q 044157 169 TVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG--I-P----LWESATLFSLILGGLCYFGSQRFIGAANGALVVGII 241 (481)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~--l-p----~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i 241 (481)
|..+++.+|.+++.......++....++++...++ . + .....+.+.++...++++|. |..++++.+.+..++
T Consensus 74 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~-~~~~~~~~~~~~~~i 152 (426)
T PF13520_consen 74 PFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGI-KLSGKIQNILTVIKI 152 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTH-HHHHHHHHHHHHHHH
T ss_pred ccchhcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechh-hhhhhhhhhhhhhhh
Confidence 99999999999887766666777777888777664 2 1 12233444456667888998 899999999998888
Q ss_pred -HHHHHHHHHhcCcc--ccc--------ccccccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHH
Q 044157 242 -ISFTALVFVASGDL--QWN--------ALLKANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIP 310 (481)
Q Consensus 242 -~~l~iii~~~~~~~--~~~--------~l~~~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~ 310 (481)
..++++++.+.... +.. +..+.++.+.+.+++...++|.+.+..+.+.+|+| + |++||++..+..++
T Consensus 153 ~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k-~-k~ip~ai~~~~~~~ 230 (426)
T PF13520_consen 153 VIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENK-N-KTIPRAIIISIIIV 230 (426)
T ss_dssp HHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSS-S-HHHHHHHHHHHHHH
T ss_pred hhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhccccccccccccccc-c-hhheeecccchhHH
Confidence 45545444433221 211 11223455677888889999999999999999975 4 89999999999999
Q ss_pred HHHHHHHHHHHHhcccccccc-CCCcchhHHHhhh--cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc-------
Q 044157 311 LGLFLVWNAVILGSISGLEMS-SGQIVDPIQQLRS--SNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLL------- 380 (481)
Q Consensus 311 ~v~Yll~~~~v~G~~~~~~~~-~~~~~~~l~~l~~--~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~------- 380 (481)
.++|++...+..+..|.++.. .++..++...+.+ .+++...++.+...++..++.++...+..|.+...-
T Consensus 231 ~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~~lP~ 310 (426)
T PF13520_consen 231 AIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDGVLPK 310 (426)
T ss_dssp HHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSG
T ss_pred HHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccccccchhh
Confidence 999999888889988876532 2333223322222 246777888888888888888888878777654332
Q ss_pred --CCCCCCCCcchhhHh--hHHHHHHHH---hCc-hHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCC
Q 044157 381 --KLPSGQSSPQPYLLT--LIPPLVLSL---LDP-EIFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSP 444 (481)
Q Consensus 381 --~~~~~~~r~~~~~l~--~~~~llia~---~~P-~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~ 444 (481)
++.| +++.+...+. .+...++.. ..| +.+..+.+...... .+.++++.+..++.|+|+|+.
T Consensus 311 ~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 379 (426)
T PF13520_consen 311 WFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGY--LISYILVILAVLFLRRKRPDL 379 (426)
T ss_dssp GGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHT--HHHHHHHHHHHHHTHHHSCSS
T ss_pred hhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhcCCc
Confidence 2223 2333433322 233323322 223 23555555444333 456777778888888887764
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.88 E-value=3.8e-19 Score=187.69 Aligned_cols=366 Identities=19% Similarity=0.219 Sum_probs=247.3
Q ss_pred chhhhccCCCcHHH-HHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCH
Q 044157 81 NQATLKRESGSLSS-AIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSL 159 (481)
Q Consensus 81 ~~~~~~~~~~s~~~-a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~ 159 (481)
++++.++|+.+.++ .....++.++|.|++.++...+..+ ....+..++++++..+.++.++|++.+.|+ .+++
T Consensus 5 ~~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~-----~GG~ 78 (466)
T COG0531 5 MMSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSAIPS-----AGGA 78 (466)
T ss_pred ccchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCe
Confidence 34445567788888 9999999999999999998877665 223333566666667778999999998884 4479
Q ss_pred HHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcC---------chHHHHHHHHHHHHHHHhhChhhHHH
Q 044157 160 VSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGI---------PLWESATLFSLILGGLCYFGSQRFIG 230 (481)
Q Consensus 160 ~~~a~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l---------p~~~~~i~~~li~~~i~~lg~~k~~~ 230 (481)
++++++.+||..+++++|.+++.......+.....+.++..+++. ........+..+...++.+|. |...
T Consensus 79 y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~-~~~~ 157 (466)
T COG0531 79 YAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGI-KASA 157 (466)
T ss_pred eeehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhH-HHHH
Confidence 999999999999999999998877776677776677777766642 123334555566677888998 8999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCcccc--ccccc------ccccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHH
Q 044157 231 AANGALVVGIIISFTALVFVASGDLQW--NALLK------ANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTA 302 (481)
Q Consensus 231 ~~~~i~~~~~i~~l~iii~~~~~~~~~--~~l~~------~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~ka 302 (481)
+++.+.+..+++.++++.+.+..+.+. .+... ..+..+..++...+++|.+.+....+.+|+||++|++||+
T Consensus 158 ~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~a 237 (466)
T COG0531 158 KINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRA 237 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHH
Confidence 999999998888776666554322222 11111 1123466777778999999999999999998777999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccccccccCCCcchhHHHhhh--cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Q 044157 303 IVVGTSIPLGLFLVWNAVILGSISGLEMSSGQIVDPIQQLRS--SNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLL 380 (481)
Q Consensus 303 i~~g~~i~~v~Yll~~~~v~G~~~~~~~~~~~~~~~l~~l~~--~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~ 380 (481)
+..+...+.++|++...++.+..+.++.....-.++...... .+.+...++.+...++..++.++...+..|.+...-
T Consensus 238 ii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~a 317 (466)
T COG0531 238 IILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAMA 317 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888888888643211100022221111 124667777788888888888888777777653322
Q ss_pred C---------CCCCCCCcchhhHhh--HHHHHHHHhCch---HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCC
Q 044157 381 K---------LPSGQSSPQPYLLTL--IPPLVLSLLDPE---IFFKALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSM 446 (481)
Q Consensus 381 ~---------~~~~~~r~~~~~l~~--~~~llia~~~P~---~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~ 446 (481)
+ +.++++|.+...+.+ +..+.+....+. .|..+.++..... .+.+.++.+..++.|+|+++.
T Consensus 318 rdg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~--~~~y~~~~~~~~~~~~~~~~~-- 393 (466)
T COG0531 318 RDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAF--LIAYLLVALALLVLRRKKPDL-- 393 (466)
T ss_pred hCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcCCCC--
Confidence 2 113333444433222 222212222211 1445554444333 467778888888888886654
Q ss_pred CCCccccCchH
Q 044157 447 TIPRIVPGGKL 457 (481)
Q Consensus 447 ~~~~~vpg~~~ 457 (481)
+++++.|..+.
T Consensus 394 ~~~~~~~~~~~ 404 (466)
T COG0531 394 KRPFRLPLAPL 404 (466)
T ss_pred CCcccccccch
Confidence 67788777654
No 45
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.87 E-value=5.8e-21 Score=202.40 Aligned_cols=384 Identities=16% Similarity=0.151 Sum_probs=264.6
Q ss_pred hhccCCCcHHHHHHHHHHHHHhHHHhHH-HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHH
Q 044157 84 TLKRESGSLSSAIFLVAGTTVGAGILAI-PAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSM 162 (481)
Q Consensus 84 ~~~~~~~s~~~a~~~iigt~IGaGIL~L-P~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~ 162 (481)
+.-+|+++.++..++.+|++||+|++-+ ..++.+.|-.+.++..++++..++.++.+++|++.+.|.. .++++.+
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~----aGs~~~y 101 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVS----AGSFYTY 101 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccc----cccceee
Confidence 4557889999999999999999999954 4566777776677888999999999999999999999942 3689999
Q ss_pred HHHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhh----------cCchHHHHHHHHHHHHHHHhh-----Chhh
Q 044157 163 AMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFL----------GIPLWESATLFSLILGGLCYF-----GSQR 227 (481)
Q Consensus 163 a~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~----------~lp~~~~~i~~~li~~~i~~l-----g~~k 227 (481)
+++.+|+-.++.++|.+++.....+.+-+.+.+.+++.+. +.|...+...+..+...+++. |..|
T Consensus 102 a~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~e 181 (554)
T KOG1286|consen 102 AYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVE 181 (554)
T ss_pred eeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhcccee
Confidence 9999999999999999999888888888888888888875 233222222222222222222 2226
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcCccccc------------ccccccccchhhhhhHHhhhccCcchHHHhHHhhccC
Q 044157 228 FIGAANGALVVGIIISFTALVFVASGDLQWN------------ALLKANFEAVPMSIPIIALSFVYQNVVPVLCTNLEGN 295 (481)
Q Consensus 228 ~~~~~~~i~~~~~i~~l~iii~~~~~~~~~~------------~l~~~~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~ 295 (481)
.....+.+++...++.+.+++.++..+.|.. .+.+.+++++..+..+.+|+|.+.+.+....+|.+||
T Consensus 182 f~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP 261 (554)
T KOG1286|consen 182 FSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNP 261 (554)
T ss_pred ehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCC
Confidence 6777777777766666666655554333311 1223347788899999999999999999999999888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--cc-CCCcchhHH-HhhhcCCcHHH---HHHHHHHHHHHHHHHHH
Q 044157 296 LSKVRTAIVVGTSIPLGLFLVWNAVILGSISGLE--MS-SGQIVDPIQ-QLRSSNGAVGP---IIDVFSFLAIATSYIGF 368 (481)
Q Consensus 296 ~k~~~kai~~g~~i~~v~Yll~~~~v~G~~~~~~--~~-~~~~~~~l~-~l~~~~~~~~~---iv~~~~~~ai~ts~~~~ 368 (481)
+|++|+++......++++|++..+.+-...|+.+ .. +....++.. ++. +.+... ++++.+++++.++.++.
T Consensus 262 ~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~--~~~~k~~~~ivna~iL~~~~s~~n~~ 339 (554)
T KOG1286|consen 262 RKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIG--NAGAKYLPHIVNAGILIGLLSSLNSS 339 (554)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHh--ccCccccchhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999997777777778765 21 122234443 332 344445 89999999999999999
Q ss_pred HHhHHHHHHhhcC---------CCCCCCCcchh-hHhhHHHHHHHHh----CchHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 044157 369 ILGLSDFLADLLK---------LPSGQSSPQPY-LLTLIPPLVLSLL----DPEIFFKALDFAGTYGVLVLFGILPAVMS 434 (481)
Q Consensus 369 ~l~l~~~l~~~~~---------~~~~~~r~~~~-~l~~~~~llia~~----~P~~f~~~l~~~G~~~~~~l~~ilP~l~~ 434 (481)
.++..|.+..+.+ +-++++++... ++..+...+.++. -++.|+.++++.|.-....+..+ ++.+
T Consensus 340 ~y~~sR~l~amA~~G~~Pk~f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i--~~~~ 417 (554)
T KOG1286|consen 340 LYAGSRVLYALAKDGLAPKFFARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLV--ALSH 417 (554)
T ss_pred hHHhHHHHHHHHhcCCcchHHhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHH--HHHH
Confidence 9998887654322 12334343322 2222222222221 22347788888876664334444 5666
Q ss_pred HHhhccCCCC--C-CCCCccccCchHHHHHHHHHHHHHHHHHHH
Q 044157 435 WSDRYSSSSP--S-MTIPRIVPGGKLTLSLVIGVAGYIILSEIL 475 (481)
Q Consensus 435 ~~~r~~~~~~--~-~~~~~~vpg~~~~~~~~i~~~~~~~~~~~~ 475 (481)
++.|+..+.. + .+.+|+-|.++...+...++.+++.+.+.+
T Consensus 418 i~~R~a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~~~~~ 461 (554)
T KOG1286|consen 418 LRFRYAMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILLAQFY 461 (554)
T ss_pred eeeeecccccCCCcccccccCCCCCchhHHHHHHHHHHHHHHHh
Confidence 6665532111 1 256788888877777777777666665544
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.85 E-value=1.4e-17 Score=176.66 Aligned_cols=374 Identities=13% Similarity=0.020 Sum_probs=220.6
Q ss_pred ccCCCcHHHHHHHHHHHH-HhHHHhHHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTT-VGAGILAIPAVT-QEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMA 163 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~-IGaGIL~LP~~~-a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a 163 (481)
-+|+.|.++...+.++.+ +|+|+++++... +.+|- ..+...+++++.....++.++|++.++|. .++.+.++
T Consensus 11 L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~P~-----aGG~Y~~~ 84 (475)
T TIGR03428 11 LHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARYPI-----SGAIYQWS 84 (475)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----CCCHHHHH
Confidence 467799999999999985 999999988754 45554 45667888888889999999999999995 45789999
Q ss_pred HHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhh------c----C--ch-----HHHHHHHHHHHHHHHhhChh
Q 044157 164 MRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFL------G----I--PL-----WESATLFSLILGGLCYFGSQ 226 (481)
Q Consensus 164 ~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~------~----l--p~-----~~~~i~~~li~~~i~~lg~~ 226 (481)
++.+||..+++++|.+++.......+.......++..++ + . |. +.....+.++...++++|.
T Consensus 85 ~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~- 163 (475)
T TIGR03428 85 RRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVINCIGV- 163 (475)
T ss_pred HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHHHHhhh-
Confidence 999999999999999887654433333333333433221 1 1 11 1223334455667888888
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHhcCccc--ccccc-c----c--cc-cchhhhhhHHhhhccCcchHHHhHHhhccCh
Q 044157 227 RFIGAANGALVVGIIISFTALVFVASGDLQ--WNALL-K----A--NF-EAVPMSIPIIALSFVYQNVVPVLCTNLEGNL 296 (481)
Q Consensus 227 k~~~~~~~i~~~~~i~~l~iii~~~~~~~~--~~~l~-~----~--~~-~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~ 296 (481)
|...++|.+.+..++..++++++.+..+.+ .+... . . ++ ..+..+.....++|.+.+....+.+|+||++
T Consensus 164 k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~ 243 (475)
T TIGR03428 164 EWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKNPR 243 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcCcc
Confidence 899999999888776655554443322111 11100 0 0 11 1233344455789999999999999999889
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcccccc---ccCCCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHH
Q 044157 297 SKVRTAIVVGTSIPLGLFLVWNAVILGSISGLE---MSSGQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLS 373 (481)
Q Consensus 297 k~~~kai~~g~~i~~v~Yll~~~~v~G~~~~~~---~~~~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~ 373 (481)
|++||++..+..+..++|.+.....+...+..+ ...+...+......+ .++ ...+.....++...+.++...+..
T Consensus 244 r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g-~~~-~~~~~~~~~i~~~~~~~~~~~~~s 321 (475)
T TIGR03428 244 RVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLD-SPW-GTVLLVDVAIAILVCTLAIQTAGS 321 (475)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhC-cHh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888777665555444333211 111122222222211 122 233334444555566666666666
Q ss_pred HHH----Hhh-------cCCCCCCCCcchhhHh--hHHHHHHHHh--Cc-hHHHHHhhhhHHHHHHHHHHHHHHHHHHHh
Q 044157 374 DFL----ADL-------LKLPSGQSSPQPYLLT--LIPPLVLSLL--DP-EIFFKALDFAGTYGVLVLFGILPAVMSWSD 437 (481)
Q Consensus 374 ~~l----~~~-------~~~~~~~~r~~~~~l~--~~~~llia~~--~P-~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~ 437 (481)
|.+ +|. +.+.|++++.+...+. .++++++... .. ..|..++++.+... .+.+.+|.+..+..
T Consensus 322 R~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~--~~~Y~~~~~~~l~~ 399 (475)
T TIGR03428 322 RLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLI--YLAYLLVTVPLLLR 399 (475)
T ss_pred HHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 554 331 1222333344443222 2223222222 22 23566666554443 34555654444433
Q ss_pred hccC--C--CCCCCCCcccc-CchHHHHHHHHHHHHHH
Q 044157 438 RYSS--S--SPSMTIPRIVP-GGKLTLSLVIGVAGYII 470 (481)
Q Consensus 438 r~~~--~--~~~~~~~~~vp-g~~~~~~~~i~~~~~~~ 470 (481)
|++. + +..+++|++.+ .++..+++.++...+..
T Consensus 400 ~~~~~~~~~~~~~~g~f~lg~~g~~vn~~a~~~~~~~~ 437 (475)
T TIGR03428 400 RLRGWPRGDQTDPAGLFSLGRWGLPVNILAVVYGALMV 437 (475)
T ss_pred HHhccCCccCCCCCCCCCCchhHHHHHHHHHHHHHHHH
Confidence 3221 1 21246778776 45555666655444443
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.85 E-value=9.6e-18 Score=178.28 Aligned_cols=373 Identities=11% Similarity=0.051 Sum_probs=217.6
Q ss_pred hccCCCcHHHHHHHHHHHH-HhHHHhHH-HHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHH
Q 044157 85 LKRESGSLSSAIFLVAGTT-VGAGILAI-PAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSM 162 (481)
Q Consensus 85 ~~~~~~s~~~a~~~iigt~-IGaGIL~L-P~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~ 162 (481)
+.+|+.+.++..++.++.+ ..+|++.. +.+++++|-...+...++++++.+..++.++|++.++|+ .++.+.+
T Consensus 9 ~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~-----~Gg~y~~ 83 (482)
T TIGR00907 9 ELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPT-----SGGQYFW 83 (482)
T ss_pred eeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCC-----CccHHHH
Confidence 3567799999999999954 22787754 446667776555677888999999999999999999984 4579999
Q ss_pred HHHHhCh----hhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc---------CchHHH---HHHHHHHHHHHHhhChh
Q 044157 163 AMRTIGT----VGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG---------IPLWES---ATLFSLILGGLCYFGSQ 226 (481)
Q Consensus 163 a~~~~G~----~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~---------lp~~~~---~i~~~li~~~i~~lg~~ 226 (481)
+++++|+ ..+++++|.+++.....+.+.....++++...++ .+.|.. .+.+..+++.++++|.
T Consensus 84 ~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in~~g~- 162 (482)
T TIGR00907 84 SAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALINSLPT- 162 (482)
T ss_pred HHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHHHhhH-
Confidence 9999874 5677888888766555555444445555543321 112322 2223345667888888
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHh-c---Cccc-----ccccccc--ccc----chhhhhhHHhhhccCcchHHHhHHh
Q 044157 227 RFIGAANGALVVGIIISFTALVFVA-S---GDLQ-----WNALLKA--NFE----AVPMSIPIIALSFVYQNVVPVLCTN 291 (481)
Q Consensus 227 k~~~~~~~i~~~~~i~~l~iii~~~-~---~~~~-----~~~l~~~--~~~----~i~~ai~vi~~af~~~~~v~~i~~~ 291 (481)
|..++++++....+++.++++++.. . ++.+ .+++.+. +|. ....++....|+|.+.+....+.+|
T Consensus 163 k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~~a~E 242 (482)
T TIGR00907 163 KWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAHMAEE 242 (482)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhHHHHh
Confidence 8999999988776665544332221 1 1111 1111111 121 1233444456999999999999999
Q ss_pred hccChhhHHHHHHHHHHHHHHHHHHHHHHHHhccc-cccccC----CCcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHH
Q 044157 292 LEGNLSKVRTAIVVGTSIPLGLFLVWNAVILGSIS-GLEMSS----GQIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYI 366 (481)
Q Consensus 292 ~~~~~k~~~kai~~g~~i~~v~Yll~~~~v~G~~~-~~~~~~----~~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~ 366 (481)
+||++|++||++..+..+..++|++.........+ .++..+ ++..+......+ .++...++.....++..++.+
T Consensus 243 ~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 321 (482)
T TIGR00907 243 IENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALG-NKAGAIFLLCLILVTSFFCAI 321 (482)
T ss_pred cCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhC-CchHHHHHHHHHHHHHHHHHH
Confidence 98888999999999988776655443333222222 111111 122233322222 124444555555566666666
Q ss_pred HHHHhHHHHH----Hhh-c------CCCCCCCCcchhhHhh--HHHHHHHH--hCc-hHHHHHhhhhHHHHHHHHHHHHH
Q 044157 367 GFILGLSDFL----ADL-L------KLPSGQSSPQPYLLTL--IPPLVLSL--LDP-EIFFKALDFAGTYGVLVLFGILP 430 (481)
Q Consensus 367 ~~~l~l~~~l----~~~-~------~~~~~~~r~~~~~l~~--~~~llia~--~~P-~~f~~~l~~~G~~~~~~l~~ilP 430 (481)
+...+..|.+ +|. + .+.|++++.+.+.+.+ +...++.. ..+ +.|..++++.+... .+.+.+|
T Consensus 322 ~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~--~i~y~~~ 399 (482)
T TIGR00907 322 TCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVAL--DVSYVIP 399 (482)
T ss_pred HHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--HHHHHHH
Confidence 6666666654 332 1 1112332444433222 22222222 122 24777777666554 4567778
Q ss_pred HHHHHHhhccCCCCCCCCCcccc-CchHHHHHHHHHHHHH
Q 044157 431 AVMSWSDRYSSSSPSMTIPRIVP-GGKLTLSLVIGVAGYI 469 (481)
Q Consensus 431 ~l~~~~~r~~~~~~~~~~~~~vp-g~~~~~~~~i~~~~~~ 469 (481)
+...++.||+ ++ ++||||++ .+++..++.++...+.
T Consensus 400 ~~~~l~~~~~-~~--~~~~f~lg~~~~~~~~~~~~~~~~~ 436 (482)
T TIGR00907 400 IICKLAKGRN-TI--APGPFWLGKYGFFVNAVAVAWTVFS 436 (482)
T ss_pred HHHHHHhcCC-CC--CCCCCcCCcchHHHHHHHHHHHHHH
Confidence 8777655444 33 37889983 3444555544443333
No 48
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.84 E-value=2.4e-17 Score=174.79 Aligned_cols=364 Identities=15% Similarity=0.154 Sum_probs=205.6
Q ss_pred CCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhcccCCCCCCHHHHHHHH
Q 044157 88 ESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFM-VVTGLLIAEVNVNTMCELGSGGVSLVSMAMRT 166 (481)
Q Consensus 88 ~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~-~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~ 166 (481)
+|++.++.+++.+.+++ ++..+|.. ++.|. .+++..++++++. .-.+++.+|++...|+ .++.++++++.
T Consensus 1 ~~~~~~~l~~~~~~~v~--~~~~~~~~-a~~G~-~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-----~GG~y~~~~~a 71 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVV--SLRGLPAE-AEYGL-SAAFYYLFAAIFFLVPVSLVAAELATAWPE-----KGGVFRWVGEA 71 (474)
T ss_pred CcccHHHHHHHHHHHHH--HhhcchHH-HHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCC-----CCCceeeHhhh
Confidence 34778887777766665 44455654 56674 3444555555544 4588899999999984 45789999999
Q ss_pred hChhhhHHHHHHHHHHHHH---HHHHHHHHhHhHhhhh------hcCchHH---HHHHHHHHHHHHHhhChhhHHHhHHH
Q 044157 167 IGTVGVQIASWSYIFIHYT---LLVAYVARSSDILTNF------LGIPLWE---SATLFSLILGGLCYFGSQRFIGAANG 234 (481)
Q Consensus 167 ~G~~~~~~~~~~~~~~~~~---~~~ay~~~~g~~l~~~------~~lp~~~---~~i~~~li~~~i~~lg~~k~~~~~~~ 234 (481)
+|+..++..+|.+++.... ...++....-.+.... ++-+.+. ..+.+..+++.+++.|. |..++++.
T Consensus 72 ~G~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv-~~~~~i~~ 150 (474)
T TIGR03813 72 FGARWGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGV-AAFTKVAK 150 (474)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHhcCh-HHHHHHHH
Confidence 9999999999988875422 1111111111111110 1112232 12233334566788998 89999998
Q ss_pred HHHH-HHHHHHHHHHHHh----cC-c---c--cccccccc--cccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHH
Q 044157 235 ALVV-GIIISFTALVFVA----SG-D---L--QWNALLKA--NFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRT 301 (481)
Q Consensus 235 i~~~-~~i~~l~iii~~~----~~-~---~--~~~~l~~~--~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~k 301 (481)
+... .+++.++++++.+ .. + . ++++..+. ++.....+. .++++|.+.+......+|+||++|++||
T Consensus 151 ~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~knP~r~iPr 229 (474)
T TIGR03813 151 WGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDNPDKNYPI 229 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccCcccchhH
Confidence 7533 2333322222221 11 1 1 11111121 233333333 3578999999999999999888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccc-CCCcchhHHHhhh--cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHH--
Q 044157 302 AIVVGTSIPLGLFLVWNAVILGSISGLEMS-SGQIVDPIQQLRS--SNGAVGPIIDVFSFLAIATSYIGFILGLSDFL-- 376 (481)
Q Consensus 302 ai~~g~~i~~v~Yll~~~~v~G~~~~~~~~-~~~~~~~l~~l~~--~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l-- 376 (481)
++..+..++.++|++.+.+..+..|.++.. .++..++.....+ ..++...++.+...++..++.++...+..|.+
T Consensus 230 Ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a 309 (474)
T TIGR03813 230 AILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLA 309 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998888888877765421 1121122222211 12445555555555566666665555544433
Q ss_pred --Hh-----hcCCCCCCCCcchhhHhh--HHHH---HHHHhCch---HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhccC
Q 044157 377 --AD-----LLKLPSGQSSPQPYLLTL--IPPL---VLSLLDPE---IFFKALDFAGTYGVLVLFGILPAVMSWSDRYSS 441 (481)
Q Consensus 377 --~~-----~~~~~~~~~r~~~~~l~~--~~~l---lia~~~P~---~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~ 441 (481)
+| .+.+.|+ ++.+...+.+ +... ++....|+ .|..+.+..+... .+.++++++..+++|+|+
T Consensus 310 ~ardg~lP~~~~kv~k-~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~--~i~y~~~~~a~i~lr~~~ 386 (474)
T TIGR03813 310 VAKAGYLPTFFQKTNK-NGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILY--LVMYLLMFASAIYLRYSQ 386 (474)
T ss_pred HhhcCCCCHHHhccCC-CCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcC
Confidence 23 1222232 2333332221 1111 12223343 1333333333222 346777778888888887
Q ss_pred CCCCCCCCccccCchHHHHHHHHHHH
Q 044157 442 SSPSMTIPRIVPGGKLTLSLVIGVAG 467 (481)
Q Consensus 442 ~~~~~~~~~~vpg~~~~~~~~i~~~~ 467 (481)
|+. +||||+|+++...+++-.++.
T Consensus 387 ~~~--~rpf~~p~g~~g~~~~~~~~~ 410 (474)
T TIGR03813 387 PDR--PRPYRIPGGLAGMWFIGGLGF 410 (474)
T ss_pred CCC--CCCeEecCCccchhHHHHHHH
Confidence 765 899999987653333333333
No 49
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.83 E-value=2.9e-17 Score=175.25 Aligned_cols=365 Identities=14% Similarity=0.084 Sum_probs=206.9
Q ss_pred cCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHH-HHHHHHHHHHHhhhhh-cccCCCCCCHHHHHH
Q 044157 87 RESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIF-MVVTGLLIAEVNVNTM-CELGSGGVSLVSMAM 164 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~-~~~t~~~l~el~~~~~-~~~g~~~~s~~~~a~ 164 (481)
+||+++++.+++.++.+. ++..+|. +++.|+- .+...+++.++ ..-.+++++|++..+| + .++.+.+++
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~~-~a~~G~~-~i~~~i~~~l~~~lp~al~~AELas~~p~~-----~GG~y~wv~ 73 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYPT-FATSGFH-LVFFLLLGGILWFIPVALCAAEMATVDGWE-----EGGIFAWVS 73 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhHH-HHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHcccCCC-----CCCeeeehh
Confidence 466999999999988876 5678884 6677742 33333443333 3558899999999875 3 357999999
Q ss_pred HHhChhhhHHHHHHHHHHHHHHHHH---HHHHhHhHhhhhhcC--chHH---HHHHHHHHHHHHHhhChhhHHHhHHHHH
Q 044157 165 RTIGTVGVQIASWSYIFIHYTLLVA---YVARSSDILTNFLGI--PLWE---SATLFSLILGGLCYFGSQRFIGAANGAL 236 (481)
Q Consensus 165 ~~~G~~~~~~~~~~~~~~~~~~~~a---y~~~~g~~l~~~~~l--p~~~---~~i~~~li~~~i~~lg~~k~~~~~~~i~ 236 (481)
+++|++.+++.+|.+++.......+ ...+..+++...-+. +.+. ..+....+++.+++.|. |..++++++.
T Consensus 74 ~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~i~~l~i~~~~t~~n~~G~-k~~~~i~~i~ 152 (507)
T TIGR00910 74 NTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFPALNEDPIIKFIAALIIFWALAFSQFGGT-KRTAKIAKAG 152 (507)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhccCcHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHH
Confidence 9999999999888877754322222 222222332211111 2221 11222234455677787 8999998875
Q ss_pred HH-HHHHHHHHHHHHh---cCccc-------cccccccccc--chhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHH
Q 044157 237 VV-GIIISFTALVFVA---SGDLQ-------WNALLKANFE--AVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAI 303 (481)
Q Consensus 237 ~~-~~i~~l~iii~~~---~~~~~-------~~~l~~~~~~--~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai 303 (481)
.. .+++.+++++..+ ....+ .+.+.+ ++. +....+....++|.+.+......+|++||+|++||++
T Consensus 153 ~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~PrAi 231 (507)
T TIGR00910 153 FFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFP-DFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPLAM 231 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCC-CcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccHHH
Confidence 44 3333222222211 11111 111111 222 2233334457899999999999999988889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccc-CCCcchhHHHhhh----cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 044157 304 VVGTSIPLGLFLVWNAVILGSISGLEMS-SGQIVDPIQQLRS----SNGAVGPIIDVFSFLAIATSYIGFILGLSDFLAD 378 (481)
Q Consensus 304 ~~g~~i~~v~Yll~~~~v~G~~~~~~~~-~~~~~~~l~~l~~----~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~ 378 (481)
..+..++.++|.+.++.+....|.++.. .++..+....... ..++...++.+...++.+++..++..+..|.+..
T Consensus 232 ~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l~~ 311 (507)
T TIGR00910 232 ILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGMFA 311 (507)
T ss_pred HHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999987666555556654421 1111122221111 1234555666666777777777777777666533
Q ss_pred hcC---------CCCCCCCcchhhHhh--HHHHHHH--Hh--Cch-H--HHHHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 044157 379 LLK---------LPSGQSSPQPYLLTL--IPPLVLS--LL--DPE-I--FFKALDFAGTYGVLVLFGILPAVMSWSDRYS 440 (481)
Q Consensus 379 ~~~---------~~~~~~r~~~~~l~~--~~~llia--~~--~P~-~--f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~ 440 (481)
.-+ +.+ +++.+.+.+.+ +...++. .. .|. + |..+++...... .+.+++..+.++++|+|
T Consensus 312 ~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~--~i~Y~l~~~a~i~lr~k 388 (507)
T TIGR00910 312 AAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIY--LCAYFLFFIGYFVLILK 388 (507)
T ss_pred hcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence 222 212 22334332222 2222211 11 121 1 222222222222 34566666677888888
Q ss_pred CCCCCCCCCccccCchHHHHHHHHHHH
Q 044157 441 SSSPSMTIPRIVPGGKLTLSLVIGVAG 467 (481)
Q Consensus 441 ~~~~~~~~~~~vpg~~~~~~~~i~~~~ 467 (481)
+|+. +||||+||++...+++-.++.
T Consensus 389 ~p~~--~rpf~~pg~~~~~~i~~~~~~ 413 (507)
T TIGR00910 389 HPDL--KRTFNIPGGIGGKLIIAGIGF 413 (507)
T ss_pred cCCC--CCCeEecCCccchhhHHHHHH
Confidence 8875 899999998654444333333
No 50
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.80 E-value=2.4e-16 Score=168.15 Aligned_cols=357 Identities=13% Similarity=0.043 Sum_probs=200.3
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhcccCCCCCCHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIF-MVVTGLLIAEVNVNTMCELGSGGVSLVSMAM 164 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~-~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~ 164 (481)
++|++|+++.+++.++.++|.+ .+|.++++.|.. +++..++++++ ....+++++|++.++|++ .++.+.+.+
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~----aGG~Y~w~~ 77 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDE----KGGIYSWMN 77 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----CCcHHHHHH
Confidence 3577999999999999999976 568777777753 44444444433 456788999999999831 357999999
Q ss_pred HHhChhhhHHHHHHHHHHHHHHH---HHHH-H-----HhHhHhhhh---hcCch--H--HHHHHHHHHHHHHHhhChhhH
Q 044157 165 RTIGTVGVQIASWSYIFIHYTLL---VAYV-A-----RSSDILTNF---LGIPL--W--ESATLFSLILGGLCYFGSQRF 228 (481)
Q Consensus 165 ~~~G~~~~~~~~~~~~~~~~~~~---~ay~-~-----~~g~~l~~~---~~lp~--~--~~~i~~~li~~~i~~lg~~k~ 228 (481)
+++|++.+++.+|.++....... .++. . ..+.+..+. .+.+. . ...+.+.++++.++..|. |.
T Consensus 78 ~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~g~-~~ 156 (496)
T PRK15238 78 KSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASKGI-NK 156 (496)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHccch-HH
Confidence 99999999988876544332211 1111 0 112221111 11111 1 223333345667788888 89
Q ss_pred HHhHHHHHHHHHHHHH----HHH-HHHhcCccc---c---ccccc---cccc---chhhhhhHHhhhccCcchHHHhHHh
Q 044157 229 IGAANGALVVGIIISF----TAL-VFVASGDLQ---W---NALLK---ANFE---AVPMSIPIIALSFVYQNVVPVLCTN 291 (481)
Q Consensus 229 ~~~~~~i~~~~~i~~l----~ii-i~~~~~~~~---~---~~l~~---~~~~---~i~~ai~vi~~af~~~~~v~~i~~~ 291 (481)
.++++++.+..++... ++. +.....+.+ + +++.+ .++. +...++....++|.+.+.+....+|
T Consensus 157 ~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E 236 (496)
T PRK15238 157 IAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDK 236 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 9999988665543221 111 111111111 1 11111 1221 3455666678999999999999999
Q ss_pred hccChhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccccC---CCcch----hHHHhhh---------------cCCcH
Q 044157 292 LEGNLSKVRTAIVVGTSIPLGLFLVWNAVILGSISGLEMSS---GQIVD----PIQQLRS---------------SNGAV 349 (481)
Q Consensus 292 ~~~~~k~~~kai~~g~~i~~v~Yll~~~~v~G~~~~~~~~~---~~~~~----~l~~l~~---------------~~~~~ 349 (481)
+++++|++||++..+..+..++|++..+.+....|.++... .+..+ ..+.+.. .+.++
T Consensus 237 ~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~g~~~ 316 (496)
T PRK15238 237 TENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYVLMNNLGYTLGHALGLSPAASLTLGVWF 316 (496)
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHHHHHHHHHHHHHHhccchhhhhhhhHHH
Confidence 98888999999999999999999986554444444433111 11111 0111110 01223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHh---------hcCCCCCCCCcchhhHhh--HHHH-H--HHHhCch---H-HH
Q 044157 350 GPIIDVFSFLAIATSYIGFILGLSDFLAD---------LLKLPSGQSSPQPYLLTL--IPPL-V--LSLLDPE---I-FF 411 (481)
Q Consensus 350 ~~iv~~~~~~ai~ts~~~~~l~l~~~l~~---------~~~~~~~~~r~~~~~l~~--~~~l-l--ia~~~P~---~-f~ 411 (481)
..+++.....+..++......+..|.+.. .+.+.| +++.+...+.+ +... + ...+.++ + |.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~ 395 (496)
T PRK15238 317 ARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAFFN 395 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHH
Confidence 33445555566666666666655443322 122223 22334332221 1111 1 1112211 1 44
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCccccCch
Q 044157 412 KALDFAGTYGVLVLFGILPAVMSWSDRYSSSSPSMTIPRIVPGGK 456 (481)
Q Consensus 412 ~~l~~~G~~~~~~l~~ilP~l~~~~~r~~~~~~~~~~~~~vpg~~ 456 (481)
.++++.+... .+.+++++..+++.|| +|+. +|||+.|+++
T Consensus 396 ~l~~l~~~~~--li~y~~~~~a~i~~r~-~~~~--~r~~~~~~~~ 435 (496)
T PRK15238 396 ILTLMANVSM--TLPYLFLAGAFPFFKK-KKDI--DRPFVVFKTK 435 (496)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHhh-ccCC--CCCceecCCc
Confidence 5555555444 4567777888888776 4554 7888886553
No 51
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.78 E-value=2.8e-18 Score=182.23 Aligned_cols=364 Identities=16% Similarity=0.192 Sum_probs=236.1
Q ss_pred HHHHHHHHhHHHhH-HHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChhhhHHH
Q 044157 97 FLVAGTTVGAGILA-IPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIA 175 (481)
Q Consensus 97 ~~iigt~IGaGIL~-LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~~~~~~ 175 (481)
+..+|+++|+|++. .+.++.++|....++.+++++++.+..+..+.|++.+.|+ .+++++++++.+|+..++.+
T Consensus 4 ~~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~-----~Gg~y~y~~~~lg~~~Gf~~ 78 (478)
T PF00324_consen 4 MISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS-----AGGFYAYASRGLGPALGFAA 78 (478)
T ss_pred EeeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc-----ccchhhhhhhccCCcCCcee
Confidence 45689999999885 5567788887677888999999999999999999999984 55899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHhhhh--h-cCc-hHHH----HHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHHHHHH
Q 044157 176 SWSYIFIHYTLLVAYVARSSDILTNF--L-GIP-LWES----ATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTAL 247 (481)
Q Consensus 176 ~~~~~~~~~~~~~ay~~~~g~~l~~~--~-~lp-~~~~----~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~l~ii 247 (481)
+|.+++.............+..++.+ + +.+ .|.+ ..++.+++..++++|. |..++++.++...+++.++.+
T Consensus 79 gw~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~gv-~~~~~~~~~~~~i~~~~li~~ 157 (478)
T PF00324_consen 79 GWAYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTWVWGILIAIIFILLITLLNLFGV-RVSGKIEFILTIIKLIALIAF 157 (478)
T ss_pred eHHHHHHHHHHHHhhhhhhhhhhccccccccccccccccchhhhhhhhhhhhhhhhhh-hccchHHHHHHHHhhhHhhhh
Confidence 99987766555555555556655554 3 345 4444 5566667777888998 899999999888887776665
Q ss_pred HHHh-c-Ccc--cc--c-----------ccccc-------cccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHH
Q 044157 248 VFVA-S-GDL--QW--N-----------ALLKA-------NFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAI 303 (481)
Q Consensus 248 i~~~-~-~~~--~~--~-----------~l~~~-------~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai 303 (481)
++.+ . ... ++ + ++.+. ++.+++.++...+++|.+.+......+|.|||+|++||++
T Consensus 158 ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~IPra~ 237 (478)
T PF00324_consen 158 IIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTIPRAT 237 (478)
T ss_pred hhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhhhhHh
Confidence 5544 1 111 11 1 11111 2567889999999999999999999999998899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccc-CC------CcchhHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 044157 304 VVGTSIPLGLFLVWNAVILGSISGLEMS-SG------QIVDPIQQLRSSNGAVGPIIDVFSFLAIATSYIGFILGLSDFL 376 (481)
Q Consensus 304 ~~g~~i~~v~Yll~~~~v~G~~~~~~~~-~~------~~~~~l~~l~~~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l 376 (481)
..+.....++|++...+.....|++... .+ +..+..+.. ..++...++++..+.+..++.++..++..|.+
T Consensus 238 ~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~--~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR~l 315 (478)
T PF00324_consen 238 LLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYS--GGPWLAWIVNAGILISAFSSANASLYAASRLL 315 (478)
T ss_pred hhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhc--ccccccceecccchhhhhhhhhhhhcccceee
Confidence 9999999999998777777777765421 11 112222222 23556667777777777777777666655433
Q ss_pred ----Hh------hcCCCCCCCCcchhhH--hhHHHHH---HHHhCch-HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 044157 377 ----AD------LLKLPSGQSSPQPYLL--TLIPPLV---LSLLDPE-IFFKALDFAGTYGVLVLFGILPAVMSWSDRYS 440 (481)
Q Consensus 377 ----~~------~~~~~~~~~r~~~~~l--~~~~~ll---ia~~~P~-~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~ 440 (481)
+| .+++ +++++.+.+.+ ..+..++ .....+. .+..+.+..+ +.. .+.+++-++.+.+.||+
T Consensus 316 ~ama~dg~lP~~~~~~-~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~-~~~-l~~~~~~~~s~~~~r~~ 392 (478)
T PF00324_consen 316 YAMARDGLLPKKFFAR-HPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNIST-ISN-LIVYILINISYIRFRKK 392 (478)
T ss_pred hhhhhhhhhhhhhhhh-hhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhh-hhh-hhHHHhhhhhhhhhhhh
Confidence 22 1222 12233333221 1111111 1122222 1222333332 222 33444445566655554
Q ss_pred CCCC---CCCCCccccCchHHHHHHHHHHHHHHH
Q 044157 441 SSSP---SMTIPRIVPGGKLTLSLVIGVAGYIIL 471 (481)
Q Consensus 441 ~~~~---~~~~~~~vpg~~~~~~~~i~~~~~~~~ 471 (481)
.+.. ..+.+++.|..+...+..+.....+++
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i 426 (478)
T PF00324_consen 393 FKYRGRSISELPFKSPFGPMFAILGIAALIIILI 426 (478)
T ss_pred hccccccccccChhhhhhHHhHHHHHHHHHHHhh
Confidence 2221 124578888888777776655444443
No 52
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.75 E-value=1.9e-15 Score=146.55 Aligned_cols=275 Identities=20% Similarity=0.276 Sum_probs=192.7
Q ss_pred cHHHHHHHHHHHHHhHHHhHHHHHH---HhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHh
Q 044157 91 SLSSAIFLVAGTTVGAGILAIPAVT---QEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTI 167 (481)
Q Consensus 91 s~~~a~~~iigt~IGaGIL~LP~~~---a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~ 167 (481)
......+..+|+++|||.-+-.+.+ .+.|+. +...+++++.+...++..+.+.+.+.. ..+|.|..++.+
T Consensus 4 ~~~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~------a~~y~~~~~~v~ 76 (349)
T COG3949 4 IFMRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFN------ATSYREILKYVS 76 (349)
T ss_pred HHHHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhc------ccchHHHHHHHh
Confidence 3456778899999999999988765 467765 555567777777889999999999886 568999999999
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhC-hhhHHHhHHHHHHHHHHHHHHH
Q 044157 168 GTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFG-SQRFIGAANGALVVGIIISFTA 246 (481)
Q Consensus 168 G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg-~~k~~~~~~~i~~~~~i~~l~i 246 (481)
|++.+.+.+....+.+++.++....+.|+.+++.+|+|.|+++++++++...+.+++ . +.+-++|.+.++.+++.+..
T Consensus 77 ~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~lP~wiGali~i~~v~i~lfl~~v-egi~tvn~iI~P~LIi~l~~ 155 (349)
T COG3949 77 GPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGLPYWIGALIIILLVLILLFLGRV-EGIITVNGIITPFLIIILVL 155 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCccHHHHHHHHHHHHHHHHHHhcc-cceeeeheeHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888888877777787 5 77888898888887766443
Q ss_pred HHHHh-cCccccc---ccc-cccccchhhhhhHHhhhccCcchHHH---hHHhhccChhhHHHHHHHHHHHHHHHHHHHH
Q 044157 247 LVFVA-SGDLQWN---ALL-KANFEAVPMSIPIIALSFVYQNVVPV---LCTNLEGNLSKVRTAIVVGTSIPLGLFLVWN 318 (481)
Q Consensus 247 ii~~~-~~~~~~~---~l~-~~~~~~i~~ai~vi~~af~~~~~v~~---i~~~~~~~~k~~~kai~~g~~i~~v~Yll~~ 318 (481)
+.... +.+.+.+ +.. ..+|. +..+-+.+++....... +-++|+ ++|+..++-..|-.+.+++..+.+
T Consensus 156 v~~~~~f~~~~~~a~~~~~~~~~W~----~~~~~Y~alNi~~~~avLv~lg~~~~-~~~~~~~g~l~gglIlgvl~~l~n 230 (349)
T COG3949 156 VTLSFQFTNLGNAAQIVLTKQGNWK----ASAVGYGALNILVAVAVLVPLGGRME-SRKVSGIGGLIGGLILGVLLFLIN 230 (349)
T ss_pred HHHHHHHhhccchhhhcCCcCCChH----HHHHhhhhHHHHhHhHhhhhhccccc-ccchhhhhhhhhhHHHHHHHHHHH
Confidence 33221 2121111 111 11332 22222455544333222 335564 567777777777666666666667
Q ss_pred HHHHhccccccccCCCcchhHHHhhh-cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCC
Q 044157 319 AVILGSISGLEMSSGQIVDPIQQLRS-SNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKL 382 (481)
Q Consensus 319 ~~v~G~~~~~~~~~~~~~~~l~~l~~-~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~~ 382 (481)
....+..+.- .+.+.|+-.+.+ .++....++.+..+.++.|+-.+..+++.+.+...+++
T Consensus 231 lsLi~~~~~v----~~~dIP~l~i~~~~~~~i~lvm~vIi~~~IytT~vg~iy~l~~r~~s~~~~ 291 (349)
T COG3949 231 LSLIALYDKV----VNYDIPLLTIAKNFSPLIGLVMSVIIWLEIYTTTVGLIYGLASRLTSFFPR 291 (349)
T ss_pred HHHHhhcchh----hccCCcHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 7777776532 122333333332 24666778888888999999998888876555554443
No 53
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.75 E-value=3.7e-15 Score=150.17 Aligned_cols=286 Identities=17% Similarity=0.263 Sum_probs=210.3
Q ss_pred CCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhC
Q 044157 89 SGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIG 168 (481)
Q Consensus 89 ~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G 168 (481)
|.|..|..++++.+++|+|++.+|...++.+- ++++..+++++......+++..+++++| +.+..|+.++.+|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p------~~~l~~~~~~~~G 73 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFP------GKTLVEISEKLFG 73 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHhC
Confidence 46788999999999999999999998765543 7788888888888888999999999987 5689999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhh--cCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHHHHH
Q 044157 169 TVGVQIASWSYIFIHYTLLVAYVARSSDILTNFL--GIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTA 246 (481)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~--~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~l~i 246 (481)
|+.+.+....+.+.............++.++..+ +.|.+.....+.++.......|. +.+.|.+.+..+..++.+..
T Consensus 74 k~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP~~~i~~~~ll~~~y~a~~G~-e~i~R~~~~~~~~~~i~~~~ 152 (320)
T PF03845_consen 74 KWLGKIINLLYILYFLLISALVLREFSEFIKTYLLPETPIWVIILLFLLVAAYAARKGI-EVIARVAEILFPIFLILLLL 152 (320)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887776666666677888877754 47878776666555555666777 89999988888887777777
Q ss_pred HHHHhcCcccccccccc---cccchhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044157 247 LVFVASGDLQWNALLKA---NFEAVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNAVILG 323 (481)
Q Consensus 247 ii~~~~~~~~~~~l~~~---~~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v~Yll~~~~v~G 323 (481)
+.....++.|++++.|. ++.++..+.....+.|++......+....+ ++|+.+|....+..+..++|.+......+
T Consensus 153 i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~-~~~~~~k~~~~~~~~~~~~~~~~~~~~i~ 231 (320)
T PF03845_consen 153 ILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVK-DKKKLKKSLLIAILISGLFLLFIIFITIG 231 (320)
T ss_pred HHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777889999988764 566777777777788887777777777774 67889999999999999999888888888
Q ss_pred ccccccccC--CCcchhHHHhhhcCCcHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCC
Q 044157 324 SISGLEMSS--GQIVDPIQQLRSSNGAVGP---IIDVFSFLAIATSYIGFILGLSDFLADLLKLPS 384 (481)
Q Consensus 324 ~~~~~~~~~--~~~~~~l~~l~~~~~~~~~---iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~~~~ 384 (481)
.++.+.... .|.-+..+..+- ++.+.. +....-..++........+...+.+++.++.++
T Consensus 232 vfG~~~~~~~~~P~~~~~~~i~i-~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~ 296 (320)
T PF03845_consen 232 VFGPELAKKLTYPVLELARSIEI-GDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKD 296 (320)
T ss_pred hcCHHHHhceecHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 888765322 222233333221 122222 222222223333333445555566788887653
No 54
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.47 E-value=2.6e-10 Score=116.49 Aligned_cols=329 Identities=16% Similarity=0.135 Sum_probs=185.2
Q ss_pred HHHHHHHHhHHHhHHHHHHH-hhc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChhhhH
Q 044157 97 FLVAGTTVGAGILAIPAVTQ-EAG--FLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQ 173 (481)
Q Consensus 97 ~~iigt~IGaGIL~LP~~~a-~~G--~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~~~~ 173 (481)
+.+.+.-+|||.|-.|-.+. ++| |..+.+.+++.++..-..+++ ..++ .+++|+++ ++.+||+.++
T Consensus 2 ~~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~----~gG~~~~l-~~~~g~~f~~ 70 (378)
T TIGR00796 2 FMLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALAL----VGGGYDSL-SARIGKVFGI 70 (378)
T ss_pred hHHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeee----cCCCHHHH-HHHhChHHHH
Confidence 35678889999999887653 444 444554455555444333332 2332 13456666 6667888888
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHhHhHhhhhhcCc-----hHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHH
Q 044157 174 IASWSYIFIHYT-------LLVAYVARSSDILTNFLGIP-----LWESATLFSLILGGLCYFGSQRFIGAANGALVVGII 241 (481)
Q Consensus 174 ~~~~~~~~~~~~-------~~~ay~~~~g~~l~~~~~lp-----~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i 241 (481)
+..+..++..-. +.++|..+ +..+++.+ .....++|..+...+++.+. |..+++++++++.++
T Consensus 71 lf~~~~~l~iGP~~aiPRtaa~s~e~~----i~p~~~~~~~~~~l~i~siiff~i~~~l~~~~~-k~~~~iGk~LTP~lL 145 (378)
T TIGR00796 71 LFTVILYLTIGPLFAIPRTATVSFEMG----IAPLLHSPTSLLALFIFSLIFFAVVLLLSLNPS-KLIDRVGKFLTPALL 145 (378)
T ss_pred HHHHHHHHHHHhchhhhHHHHHHHHHH----HHhccCcccchHHHHHHHHHHHHHHHHHHcCcc-cHHHHhHHHHHHHHH
Confidence 887766544322 22344333 23334321 11222233222233566777 999999999999999
Q ss_pred HHHHHHHHHhcC--ccccccc-ccc-cccchhhhhhHHhhhcc-------CcchHHHhHH-hhccChhhHHHHHHHHH-H
Q 044157 242 ISFTALVFVASG--DLQWNAL-LKA-NFEAVPMSIPIIALSFV-------YQNVVPVLCT-NLEGNLSKVRTAIVVGT-S 308 (481)
Q Consensus 242 ~~l~iii~~~~~--~~~~~~l-~~~-~~~~i~~ai~vi~~af~-------~~~~v~~i~~-~~~~~~k~~~kai~~g~-~ 308 (481)
+.++++++.++. ..+.++- .+. +-+.+..++---+.++- +..++..+.+ ++++++|+.++.+..|. +
T Consensus 146 i~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~ia 225 (378)
T TIGR00796 146 VTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLIA 225 (378)
T ss_pred HHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 988877766542 2111111 011 00112222211122222 2333445554 67656677788888887 6
Q ss_pred HHHHHHHHHHHHHHhccccccccC-CCcchhHHHhhh--cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcCCCCC
Q 044157 309 IPLGLFLVWNAVILGSISGLEMSS-GQIVDPIQQLRS--SNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLKLPSG 385 (481)
Q Consensus 309 i~~v~Yll~~~~v~G~~~~~~~~~-~~~~~~l~~l~~--~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~~~~~ 385 (481)
...+.|+..+++.+|..+.++..+ +|-++++..... .++....+..+...+|.+|+.++...+..+.+++.+.+
T Consensus 226 ~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k--- 302 (378)
T TIGR00796 226 AVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK--- 302 (378)
T ss_pred HHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---
Confidence 677788888889999887553221 123344443332 24566778888888999999999988888887776442
Q ss_pred CCCcchhhH-hhHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHH--H--hhccCCCCCCCCCccccC
Q 044157 386 QSSPQPYLL-TLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSW--S--DRYSSSSPSMTIPRIVPG 454 (481)
Q Consensus 386 ~~r~~~~~l-~~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~--~--~r~~~~~~~~~~~~~vpg 454 (481)
-....+++ ..+.+.+++... ++.++++..- ++.++.|..... . .||+.|+. +|+||+|-
T Consensus 303 -~~y~~~v~~~~l~s~~ia~~G---l~~Ii~~~~P----vL~~~YP~~i~lill~ll~~~~~~~--~~~y~~~~ 366 (378)
T TIGR00796 303 -LSYKTWVIVFTLFSFIVANLG---LTQIISISIP----VLMIIYPLAIVLILLSFLRKLWDSK--RAVYQITL 366 (378)
T ss_pred -CCHHHHHHHHHHHHHHHHHhC---HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCC--CCeeehHH
Confidence 11122322 223344555543 5667665433 345555555432 2 56776664 78888654
No 55
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.29 E-value=8.3e-09 Score=107.09 Aligned_cols=255 Identities=13% Similarity=0.055 Sum_probs=138.7
Q ss_pred ccchhhHHHHHhhcccchhhhccCCCcHHHHHHHHHHHHHh--HHHh-HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Q 044157 65 TEQEFEFEFERLFSNLNQATLKRESGSLSSAIFLVAGTTVG--AGIL-AIPAVTQEAGFLASAVAVILCWIFMVVTGLLI 141 (481)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~a~~~iigt~IG--aGIL-~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l 141 (481)
+|.++++++|+...+..-+++-+|..++|+....-++.+ | .||- ++.+.+...|....+-..++++.+.+..+..+
T Consensus 25 ~~v~~~~~d~~~L~~lgYkqef~R~fs~~s~fg~sFs~~-g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~sl 103 (550)
T KOG1289|consen 25 SDVPEDDSDEELLAELGYKQELKREFSLFSIFGISFSLM-GLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSL 103 (550)
T ss_pred ccCccccCCHHHHHHcCCchhhhhhhhHHHHHHHHHHHh-cchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHH
Confidence 444455555555556555555677788876655544431 1 1221 22233333444434444677788888999999
Q ss_pred HHHhhhhhcccCCCCCCHHHHHHHHhChhhhHHHHH----HHHHHHHHHHHHHHHHhHhHhhh---hhc---Cc-h---H
Q 044157 142 AEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIASW----SYIFIHYTLLVAYVARSSDILTN---FLG---IP-L---W 207 (481)
Q Consensus 142 ~el~~~~~~~~g~~~~s~~~~a~~~~G~~~~~~~~~----~~~~~~~~~~~ay~~~~g~~l~~---~~~---lp-~---~ 207 (481)
+|++..+|.. ++.+--+.+.-|++.+.+.+| ...+-......+.....++.... +.+ .+ . +
T Consensus 104 aEl~Sa~Pts-----GgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~ 178 (550)
T KOG1289|consen 104 AELCSAMPTS-----GGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQF 178 (550)
T ss_pred HHHHhhCCCC-----CcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEee
Confidence 9999999953 344444444445554444443 33222211111111111111111 111 11 1 1
Q ss_pred HHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHHHHHHHHHh-c---Cc--cc-ccc----cc-cccccc----hhhh
Q 044157 208 ESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTALVFVA-S---GD--LQ-WNA----LL-KANFEA----VPMS 271 (481)
Q Consensus 208 ~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~l~iii~~~-~---~~--~~-~~~----l~-~~~~~~----i~~a 271 (481)
.......++.++++.++. |.+.++|++.+...+..+++..+.. . .+ ++ .+. .. ..+|+. +..+
T Consensus 179 ~v~~ai~~v~~lln~~p~-r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~ 257 (550)
T KOG1289|consen 179 GVFEAILFVHGLLNSLPT-RVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILG 257 (550)
T ss_pred hHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHh
Confidence 222222334556778887 8999999998877655444433322 1 11 11 111 11 124542 2233
Q ss_pred hhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 044157 272 IPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLVWNAVILGSIS 326 (481)
Q Consensus 272 i~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v~Yll~~~~v~G~~~ 326 (481)
+-...+.+.+.+.-+.+.+|.++..|+.||++..+.++..++=-.+...+...++
T Consensus 258 f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~ 312 (550)
T KOG1289|consen 258 FFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIP 312 (550)
T ss_pred hccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344677788888888999998778999999999888777655444555666665
No 56
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.99 E-value=1.3e-06 Score=90.15 Aligned_cols=153 Identities=14% Similarity=0.139 Sum_probs=95.2
Q ss_pred CHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHH
Q 044157 158 SLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALV 237 (481)
Q Consensus 158 s~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~ 237 (481)
+=..++|..||++++.+..+...+.+.|=...-.+.+++...+..++|.+++.++..++.....++|. |.+.+++++.+
T Consensus 82 pqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~~~~~~~ili~g~l~~l~~ifG~-r~l~~l~~~a~ 160 (442)
T COG1457 82 PQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTGLPVWAGILIIGVLMTLVTIFGY-RALHKLERIAV 160 (442)
T ss_pred ChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHH
Confidence 34557799999999998888887777665444444555533333467888888888777777888998 89999999999
Q ss_pred HHHHHHHHHHHHHhcCccc-ccccc---cccccchhhhhhHHhhhc-cCcchHHHhHHhhccChh--hHHHHHHHHHHHH
Q 044157 238 VGIIISFTALVFVASGDLQ-WNALL---KANFEAVPMSIPIIALSF-VYQNVVPVLCTNLEGNLS--KVRTAIVVGTSIP 310 (481)
Q Consensus 238 ~~~i~~l~iii~~~~~~~~-~~~l~---~~~~~~i~~ai~vi~~af-~~~~~v~~i~~~~~~~~k--~~~kai~~g~~i~ 310 (481)
+..+..+...+.......+ .+... +.++..+..++...+-.+ ++....+...++++ ++| |.-.+...|..+.
T Consensus 161 ~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~-~~t~~~~~~~~~~G~~l~ 239 (442)
T COG1457 161 PLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAP-SPTPSKAFLAAVLGFFLG 239 (442)
T ss_pred HHHHHHHHHHHHHHHhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcC-CCchHHHHHHHHHHHHHH
Confidence 9988887777666554322 12221 334444555554443222 22233556666664 334 3333444454444
Q ss_pred HH
Q 044157 311 LG 312 (481)
Q Consensus 311 ~v 312 (481)
..
T Consensus 240 ~~ 241 (442)
T COG1457 240 TS 241 (442)
T ss_pred HH
Confidence 33
No 57
>PRK11017 codB cytosine permease; Provisional
Probab=98.98 E-value=4.6e-06 Score=86.80 Aligned_cols=152 Identities=16% Similarity=0.108 Sum_probs=89.8
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHh-HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGIL-AIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAM 164 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL-~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~ 164 (481)
++|+ ++++..++..|..+....+ .........++..+++.++++-++...-..+......++ +.++..+.|
T Consensus 7 ~~r~-~~~~~~~~~~g~~~~~~~~~~g~~l~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G~k~-------G~~~~v~sR 78 (404)
T PRK11017 7 SARK-GVLSLTMVMLGFTFFSASMWAGGTLGTGLSFVDFLLAVLIGNLLLGIYTAALGYIGAKT-------GLSTHLLAR 78 (404)
T ss_pred HHhc-chHhHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------CcCHHHHHH
Confidence 3444 7777656555554443322 222222346666666666655544333333333333333 568999999
Q ss_pred HHhChhhhHHHHHHHHHHHHH--HHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHH
Q 044157 165 RTIGTVGVQIASWSYIFIHYT--LLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIII 242 (481)
Q Consensus 165 ~~~G~~~~~~~~~~~~~~~~~--~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~ 242 (481)
..||++|..+..+...+...+ ..-.+ ..+..+++.++.+.+...+++.++.....+.|. |.+.+++++..+...+
T Consensus 79 ~~FG~~Gs~l~~~~~~i~~igW~av~~~--~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~G~-~~i~~~~~~~~p~~~~ 155 (404)
T PRK11017 79 FSFGEKGSWLPSLLLGFTQVGWFGVGVA--MFAIPVVKATGLDINLLIVLSGLLMTVTAYFGI-SALTILSRIAVPAIAL 155 (404)
T ss_pred HHhchhHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999998877665544322 11222 234455666676665555556566666667777 8899999998887766
Q ss_pred HHHHHH
Q 044157 243 SFTALV 248 (481)
Q Consensus 243 ~l~iii 248 (481)
.++...
T Consensus 156 ~~~~~~ 161 (404)
T PRK11017 156 LGGYSV 161 (404)
T ss_pred HHHHHH
Confidence 554433
No 58
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=98.97 E-value=5.6e-06 Score=85.67 Aligned_cols=153 Identities=11% Similarity=0.107 Sum_probs=98.7
Q ss_pred CCCcHHHHHHHHHHHHHhHH-HhHHHHHHHhhchHHH----HHHHHHHHHHHHHHHHHHHHHhhhhhcccCC---CCCCH
Q 044157 88 ESGSLSSAIFLVAGTTVGAG-ILAIPAVTQEAGFLAS----AVAVILCWIFMVVTGLLIAEVNVNTMCELGS---GGVSL 159 (481)
Q Consensus 88 ~~~s~~~a~~~iigt~IGaG-IL~LP~~~a~~G~~~~----~i~lil~~~~~~~t~~~l~el~~~~~~~~g~---~~~s~ 159 (481)
+..|-+++.+...++.+|.| |++.|.+++..| .++ ++..+++....+.... +..++++++++ .+...
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~----L~~~yr~~~~~g~~~GGP~ 119 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVEST----LAQKYRERDADGVFRGGPM 119 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHH----HHHHeeeeCCCCCEecChH
Confidence 45899999999999999998 999999976665 445 5555555544433332 23333321110 12233
Q ss_pred HHHHHHHhChhhhHHHHHHHHHHHHHH-HHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHH
Q 044157 160 VSMAMRTIGTVGVQIASWSYIFIHYTL-LVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVV 238 (481)
Q Consensus 160 ~~~a~~~~G~~~~~~~~~~~~~~~~~~-~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~ 238 (481)
+.+-+...|||.+.+.++. .+..++. ...-.....+.+++.+++|.|...+++.++...+..-|. |.+.+++...++
T Consensus 120 yyi~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~~~~~v~~i~l~~l~~~vi~GGi-k~Ia~v~~~lvP 197 (425)
T TIGR00835 120 YYIKKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFNVPKLVTGIVLTVLTALIIFGGL-KRIAKISSVVVP 197 (425)
T ss_pred HHHHHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHH
Confidence 7887778889877776665 3222232 222234556666656688888877777666555554456 899999999999
Q ss_pred HHHHHHHHH
Q 044157 239 GIIISFTAL 247 (481)
Q Consensus 239 ~~i~~l~ii 247 (481)
.+....+..
T Consensus 198 ~m~~~Y~~~ 206 (425)
T TIGR00835 198 FMALLYVIM 206 (425)
T ss_pred HHHHHHHHH
Confidence 887765433
No 59
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.92 E-value=1e-05 Score=86.01 Aligned_cols=153 Identities=14% Similarity=0.132 Sum_probs=100.3
Q ss_pred hccCCCcHHHHHHHHHHHHHhHHHh-HHHHHHHhhchHHHHHHH---HHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHH
Q 044157 85 LKRESGSLSSAIFLVAGTTVGAGIL-AIPAVTQEAGFLASAVAV---ILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLV 160 (481)
Q Consensus 85 ~~~~~~s~~~a~~~iigt~IGaGIL-~LP~~~a~~G~~~~~i~l---il~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~ 160 (481)
...|+.+++...+.++++.+|++.+ +.|....+.|+.+..... ..++....+-+..+.+..++. +..+..
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~T~~ 110 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY------NAITIN 110 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCccHH
Confidence 3478899999999999999999865 688877777764221111 111111111122233333333 267999
Q ss_pred HHHHHHhChh-hhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHH
Q 044157 161 SMAMRTIGTV-GVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVG 239 (481)
Q Consensus 161 ~~a~~~~G~~-~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~ 239 (481)
|+.++-||++ .+.+.++...+..++...+-..+.+..++.++|+|.+.+.++..++......+|..|.+...+.+-.+.
T Consensus 111 e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi~~~~~iii~~~iv~iYt~~GG~~av~~td~iQ~~v 190 (471)
T TIGR02119 111 DVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGLSYLTALFIFSSSVLIYTTFGGFRAVALTDAIQGIV 190 (471)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9999999955 566777766666555556666778888888999998887777666566666666557777777666555
Q ss_pred HHHH
Q 044157 240 IIIS 243 (481)
Q Consensus 240 ~i~~ 243 (481)
+++.
T Consensus 191 ~~~~ 194 (471)
T TIGR02119 191 MFTG 194 (471)
T ss_pred HHHH
Confidence 5443
No 60
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.92 E-value=5e-06 Score=86.66 Aligned_cols=146 Identities=14% Similarity=0.165 Sum_probs=96.4
Q ss_pred cCCCcHHHHHHHHHHHHHhHHHh-HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHH
Q 044157 87 RESGSLSSAIFLVAGTTVGAGIL-AIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMR 165 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaGIL-~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~ 165 (481)
.|+.+.+-..+.++++.+|++.+ +.|....+.|+...+. .+.........++.+++...+. +..+..|+.++
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------~~~T~~e~l~~ 74 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFY-ELGALVLLIILGWLFVPIFINN------GAYTMPEYLEK 74 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc------CCCchhHHHHH
Confidence 47788999999999999998755 7888777778542221 1111112233444444443332 26799999999
Q ss_pred HhCh-hhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHH
Q 044157 166 TIGT-VGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVG 239 (481)
Q Consensus 166 ~~G~-~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~ 239 (481)
-||+ ..+.+..+...+.......+-..+.+..++.++|+|.+...++..++......+|..|.+...+.+-...
T Consensus 75 Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 75 RFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITGLDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 9998 5677766666665555566667788888988899998887766666665555565446655555444433
No 61
>PRK11375 allantoin permease; Provisional
Probab=98.91 E-value=2.2e-06 Score=91.10 Aligned_cols=220 Identities=13% Similarity=0.112 Sum_probs=108.0
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHH-H-HHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPA-V-TQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMA 163 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~-~-~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a 163 (481)
++|+.++++-..+-.|..+..+.+.+-. . ....++..+++.++++-++...-..+......++ +-++..+.
T Consensus 23 ~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~-------Gl~~~v~s 95 (484)
T PRK11375 23 SQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFILGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKY-------GVPFAMIL 95 (484)
T ss_pred cccCCcHHHHHHHHHHHhccHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHhccccccc-------CCChhHhH
Confidence 3555666666655555544433321111 1 1235556666666655554433333333333333 45799999
Q ss_pred HHHhChhhhHHHHHHHH-HH--HHHHHHHHHH--HhHhHhhhhh-------------cCc--hHHHHHHHHHHHHHHHhh
Q 044157 164 MRTIGTVGVQIASWSYI-FI--HYTLLVAYVA--RSSDILTNFL-------------GIP--LWESATLFSLILGGLCYF 223 (481)
Q Consensus 164 ~~~~G~~~~~~~~~~~~-~~--~~~~~~ay~~--~~g~~l~~~~-------------~lp--~~~~~i~~~li~~~i~~l 223 (481)
|..||++|..+..+... +. .+...-.|.. .....++.++ |++ .+.+..++.++..++.+.
T Consensus 96 R~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~~ 175 (484)
T PRK11375 96 RASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGFG 175 (484)
T ss_pred HHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHHc
Confidence 99999999877776653 22 2222233321 1112222322 111 123333444555555667
Q ss_pred ChhhHHHhHHHHHHHHHHHHHHHHHHHhcCcccccccc---ccc-------ccchhhhhhHHhhhcc-CcchHHHhHHhh
Q 044157 224 GSQRFIGAANGALVVGIIISFTALVFVASGDLQWNALL---KAN-------FEAVPMSIPIIALSFV-YQNVVPVLCTNL 292 (481)
Q Consensus 224 g~~k~~~~~~~i~~~~~i~~l~iii~~~~~~~~~~~l~---~~~-------~~~i~~ai~vi~~af~-~~~~v~~i~~~~ 292 (481)
|. |.+.+++.+..+..++.++.+.+....+.+.+.+. +.+ .-.+..++...+-+|. ...+.|...++.
T Consensus 176 g~-~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~ 254 (484)
T PRK11375 176 GG-KVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNA 254 (484)
T ss_pred CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhccc
Confidence 77 88999998888877655444433222221222221 111 1112233322233333 223456666666
Q ss_pred ccChhhHHHHHHHHHHHHHHHH
Q 044157 293 EGNLSKVRTAIVVGTSIPLGLF 314 (481)
Q Consensus 293 ~~~~k~~~kai~~g~~i~~v~Y 314 (481)
|++|+..++-.+|..+...+.
T Consensus 255 -k~~~~~~~~~~~g~~i~~~~~ 275 (484)
T PRK11375 255 -HSFRAQALGQTLGLVVAYILF 275 (484)
T ss_pred -CChhhhHHHHHHHHHHHHHHH
Confidence 356666666666665554443
No 62
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.90 E-value=3.6e-06 Score=87.67 Aligned_cols=145 Identities=18% Similarity=0.174 Sum_probs=82.4
Q ss_pred cCCCcHHHHHHHHHHHHHhHHH-hHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHH
Q 044157 87 RESGSLSSAIFLVAGTTVGAGI-LAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMR 165 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaGI-L~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~ 165 (481)
.|+.+++-..+..+++.+|++. ++.|....+.|+...+ ..+..++.....++.+++-..+. +..+..|+.++
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~-~~~~~~~~~~~~~~~~~~~~r~~------~~~T~~e~~~~ 77 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLW-YAIGYAIGFLLFALFFAPRLRRS------GAVTIPEYLEK 77 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGH-HHHHHHHHHHHHHHHTHHHHHHT------T--SHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceee-eccccchhHHHHHHHHHHhhccc------chhhhhhhhhh
Confidence 5778999999999999999974 4789888777764322 22322333233334444433332 36799999999
Q ss_pred HhChhh--hHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHH
Q 044157 166 TIGTVG--VQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVV 238 (481)
Q Consensus 166 ~~G~~~--~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~ 238 (481)
-||+.. +.+..+...+....-+.+...+.+..++..+|+|.+...++..+++.....+|..|.+...+.+-..
T Consensus 78 Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 78 RYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGIPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp HT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred hcCCchhhhhhcccccchhhhhhhhccccccccchhhccchhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 999988 6665554444443444555677888888888988877666665555555556644665555444333
No 63
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.89 E-value=1.3e-05 Score=85.38 Aligned_cols=152 Identities=17% Similarity=0.175 Sum_probs=95.9
Q ss_pred hccCCCcHHHHHHHHHHHHHhHHHh-HHHHHHHhhchHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHH
Q 044157 85 LKRESGSLSSAIFLVAGTTVGAGIL-AIPAVTQEAGFLASAVA---VILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLV 160 (481)
Q Consensus 85 ~~~~~~s~~~a~~~iigt~IGaGIL-~LP~~~a~~G~~~~~i~---lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~ 160 (481)
...|+.+.|-..+.++++.+|++.+ +.|....+.|+.+.+.. ....++...+.+..+.+..++. +..+..
T Consensus 38 ~agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~------~~~T~~ 111 (483)
T PRK09442 38 LGNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY------NAVTLN 111 (483)
T ss_pred eeCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCccHH
Confidence 3478889999999999999998755 78887777776422211 1112222222333334444443 267999
Q ss_pred HHHHHHhChh-hhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHH
Q 044157 161 SMAMRTIGTV-GVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVG 239 (481)
Q Consensus 161 ~~a~~~~G~~-~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~ 239 (481)
|+.++-||+. .+.+..+...+.....+.+-+.+.|..++.++|+|.+.+.++..++......+|..|.+...+.+-.+.
T Consensus 112 e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi~~~~~iii~~~iv~iYt~~GGl~av~~TD~iQ~~i 191 (483)
T PRK09442 112 DMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGISYETGLLIFGITVALYTAFGGFRAVVLTDALQGIV 191 (483)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 9999999865 455665555544444455556778888888889998877666655555556666547766666555444
Q ss_pred HHH
Q 044157 240 III 242 (481)
Q Consensus 240 ~i~ 242 (481)
+++
T Consensus 192 ~~~ 194 (483)
T PRK09442 192 MLV 194 (483)
T ss_pred HHH
Confidence 433
No 64
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.84 E-value=7.7e-06 Score=86.20 Aligned_cols=223 Identities=13% Similarity=0.041 Sum_probs=111.1
Q ss_pred hhccCCCcHHHHHHHHHHHHHhHHHhHHHHHHHh--hchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHH
Q 044157 84 TLKRESGSLSSAIFLVAGTTVGAGILAIPAVTQE--AGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVS 161 (481)
Q Consensus 84 ~~~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~--~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~ 161 (481)
+.++|+.++++...+-++..+...-+..-..... .++..+++..+++-++...-.........++ +-++..
T Consensus 8 p~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~~~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~-------Gl~~~v 80 (442)
T TIGR00800 8 KEEERTWSFLNYFSLWLGAAFNIATWAIGALGLPLGLSWWQSVIAIILGNLLGGIFVALNSRAGAKY-------GLPFPV 80 (442)
T ss_pred CcccCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHh-------CCCcch
Confidence 3345666777777777777666555544443332 4556566666655544433333344444443 457888
Q ss_pred HHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhh----cC----c------hHHHHHHHHHHHHHHHhhChhh
Q 044157 162 MAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFL----GI----P------LWESATLFSLILGGLCYFGSQR 227 (481)
Q Consensus 162 ~a~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~----~l----p------~~~~~i~~~li~~~i~~lg~~k 227 (481)
+.|..||+++..+..+...+...+=...-....++.+...+ +- + ...+.+++.++...+...+..|
T Consensus 81 ~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~~~g~~ 160 (442)
T TIGR00800 81 LSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLFFFGYK 160 (442)
T ss_pred hhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHHcCHHH
Confidence 99999999999888877665544322222223444333332 21 2 1222233333333333344436
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcCcc---cccccc----cc-cccchhhhhhHHh-hhccCcchHHHhHHhhccChhh
Q 044157 228 FIGAANGALVVGIIISFTALVFVASGDL---QWNALL----KA-NFEAVPMSIPIIA-LSFVYQNVVPVLCTNLEGNLSK 298 (481)
Q Consensus 228 ~~~~~~~i~~~~~i~~l~iii~~~~~~~---~~~~l~----~~-~~~~i~~ai~vi~-~af~~~~~v~~i~~~~~~~~k~ 298 (481)
...+.+....+..++.+++.+....... +..... +. ....+..++...+ +.-++....|...++++ ++|+
T Consensus 161 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~-~~~~ 239 (442)
T TIGR00800 161 IRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGK-SKKT 239 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcC-Cccc
Confidence 6666666666665555544443322111 111011 01 1122333333322 22233345677777774 4455
Q ss_pred HHHHHHHHHHHHHHHH
Q 044157 299 VRTAIVVGTSIPLGLF 314 (481)
Q Consensus 299 ~~kai~~g~~i~~v~Y 314 (481)
-.+...++.....+..
T Consensus 240 ~~~~~~~~~~~~~~~~ 255 (442)
T TIGR00800 240 AIWGQFLALPGGFTLT 255 (442)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5555666655544433
No 65
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.77 E-value=0.00013 Score=77.84 Aligned_cols=152 Identities=9% Similarity=0.033 Sum_probs=89.5
Q ss_pred hccCCCcHHHHHHHHHHHHHhHHHh-HHHHHHHhhchHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhc-ccCCCCCCHHH
Q 044157 85 LKRESGSLSSAIFLVAGTTVGAGIL-AIPAVTQEAGFLASAVAVILCWIFM-VVTGLLIAEVNVNTMC-ELGSGGVSLVS 161 (481)
Q Consensus 85 ~~~~~~s~~~a~~~iigt~IGaGIL-~LP~~~a~~G~~~~~i~lil~~~~~-~~t~~~l~el~~~~~~-~~g~~~~s~~~ 161 (481)
...|+.+++-..+.+.+|.+++..+ +.|......|+...+.. .+..+. ....+.+++-..+..+ + .+..+..|
T Consensus 33 lagr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~--~g~~~~~~~~~~~~~~~~r~~~~~~--~~~~T~~e 108 (487)
T TIGR02121 33 LGGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIA--IGLTIGAYINWKFVAPRLRVYTEAA--HNSITLPD 108 (487)
T ss_pred eeCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHhh--cCCccHHH
Confidence 3478889998888888998888754 78887777787533221 122221 2223334443332221 1 13568999
Q ss_pred HHHHHhChh---hhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHH
Q 044157 162 MAMRTIGTV---GVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVV 238 (481)
Q Consensus 162 ~a~~~~G~~---~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~ 238 (481)
+.++-||+. .+.+.++...+....-+..-..+.+..++.++|+|.+...++..++......+|..|.+...+.+=..
T Consensus 109 ~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi~~~~~iii~~~i~~~Yt~~GGl~av~~TD~iQ~~ 188 (487)
T TIGR02121 109 FFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGLDYKTGLLIGALIIVIYTFFGGFLAVSWTDFVQGL 188 (487)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999954 34344443332222222333356677888888999887776665666666666654666555544443
Q ss_pred HH
Q 044157 239 GI 240 (481)
Q Consensus 239 ~~ 240 (481)
.+
T Consensus 189 i~ 190 (487)
T TIGR02121 189 LM 190 (487)
T ss_pred HH
Confidence 33
No 66
>PRK00701 manganese transport protein MntH; Reviewed
Probab=98.73 E-value=3.2e-05 Score=81.15 Aligned_cols=142 Identities=19% Similarity=0.114 Sum_probs=73.8
Q ss_pred HHHHHHHHHHhHHHhHHH-HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChhhhH
Q 044157 95 AIFLVAGTTVGAGILAIP-AVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQ 173 (481)
Q Consensus 95 a~~~iigt~IGaGIL~LP-~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~~~~ 173 (481)
=.++...+.+|.|=+.-- .+=++.|+-.-+.++ ++......+-|++.|..-.. +.+..|..++-+||+..+
T Consensus 39 PG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~ll-----ls~~~~~~~Q~~~~RlgivT---G~~l~~~ir~~~~~~~~~ 110 (439)
T PRK00701 39 PAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVIL-----LSNLMAMLLQSLSAKLGIAT---GRDLAQACRDRYPRPVVW 110 (439)
T ss_pred cHHHhhhheecchHHHHHHHHHHHHCHHHHHHHH-----HHHHHHHHHHHHHhHhhhhc---CCCHHHHHHHHCCchHHH
Confidence 334444555666655332 223456654333222 22333445566666654321 457999999999998877
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHH--hhChhhHHHhHHHHHHHHHHHHH
Q 044157 174 IASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLC--YFGSQRFIGAANGALVVGIIISF 244 (481)
Q Consensus 174 ~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~--~lg~~k~~~~~~~i~~~~~i~~l 244 (481)
+.+....+...+...+-..+.+.-++.++|+|.+++..+..+....+. ..+..|.++++...++..+.+.+
T Consensus 111 ~~~~~~~l~~~~~~~~e~~G~a~al~ll~gip~~~~v~i~~~~~~~~l~l~~~~y~~~E~i~~~lv~~m~l~f 183 (439)
T PRK00701 111 FLWIQAELAIMATDLAEVIGAAIALKLLFGIPLLQGALITALDTFLILMLQRRGFRPLEAIIGGLLLVIAAAF 183 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 665554443333334444555555566678887665543322211111 23333566666554444433333
No 67
>PRK12488 acetate permease; Provisional
Probab=98.73 E-value=8.9e-05 Score=80.29 Aligned_cols=150 Identities=15% Similarity=0.086 Sum_probs=98.0
Q ss_pred hccCCCcHHHHHHHHHHHHHhHHHh-HHHHHHHhhchHHHHHHHHHHHHHHHH-HHHHHHHHhhhhhcccCCCCCCHHHH
Q 044157 85 LKRESGSLSSAIFLVAGTTVGAGIL-AIPAVTQEAGFLASAVAVILCWIFMVV-TGLLIAEVNVNTMCELGSGGVSLVSM 162 (481)
Q Consensus 85 ~~~~~~s~~~a~~~iigt~IGaGIL-~LP~~~a~~G~~~~~i~lil~~~~~~~-t~~~l~el~~~~~~~~g~~~~s~~~~ 162 (481)
...|+.++|...+.+.++.++++.+ +.|......|+...+ ..+++.+.+. ..+.+++-..+. +..+..|+
T Consensus 64 laGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~--~~~g~~~g~~~~~~~~a~~lr~~------g~~T~~d~ 135 (549)
T PRK12488 64 TAGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLL--YALGVLAGWPIILFLIAERLRNL------GKYTFADV 135 (549)
T ss_pred eeCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHH--HHHHHHHHHHHHHHHHHHHHHHC------CCcchHHH
Confidence 3488899999999999999999854 899888788864322 1222222211 123334333332 25689999
Q ss_pred HHHHhC-hhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHH
Q 044157 163 AMRTIG-TVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGII 241 (481)
Q Consensus 163 a~~~~G-~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i 241 (481)
.++-|| |..+.+.++...+....-+.+-..+.|..++.++|+|.+...++..++......+|..|.+.+.+.+=.+.++
T Consensus 136 l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~im~ 215 (549)
T PRK12488 136 VSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGISYLYAVVIVGALMVLYVTFGGMLATTWVQIIKAVLLL 215 (549)
T ss_pred HHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence 888887 6678887776655544444455567788888888999887776666666666667655776666555444443
Q ss_pred H
Q 044157 242 I 242 (481)
Q Consensus 242 ~ 242 (481)
+
T Consensus 216 ~ 216 (549)
T PRK12488 216 S 216 (549)
T ss_pred H
Confidence 3
No 68
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=98.72 E-value=7.3e-05 Score=77.29 Aligned_cols=160 Identities=19% Similarity=0.114 Sum_probs=96.0
Q ss_pred cCCCcHHHHHHHHHHHHHhHHHhHHHH-HHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHH
Q 044157 87 RESGSLSSAIFLVAGTTVGAGILAIPA-VTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMR 165 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaGIL~LP~-~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~ 165 (481)
++.....+-.+++....+|.|-++--. +-++.|+-..+++++ +......+=+++.|..-.. +.+..|..++
T Consensus 14 ~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vill-----s~l~~~~~Q~~~arLgivT---G~~laq~ir~ 85 (416)
T COG1914 14 RKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILL-----SNLMAYILQELSARLGIVT---GKGLAEAIRE 85 (416)
T ss_pred HHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHh---CCcHHHHHHH
Confidence 344667777888888888888775443 345777754443322 2233333444555543221 4468888888
Q ss_pred HhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHHHH
Q 044157 166 TIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFT 245 (481)
Q Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~l~ 245 (481)
.++|+.+++.++...+.......+-.++.+--++-++++|...+.++..+....+...+..|..+++-..+...+.+.++
T Consensus 86 ~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~~~g~iItav~~~iil~~~~~r~~E~~v~~l~~~~~i~~~ 165 (416)
T COG1914 86 RYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPLIIGAVITAVDVLIILLLKGYRLLERVVLILGLVLVILFV 165 (416)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 89999988887766655555556666666666666777887776666654444444343236777776666555555444
Q ss_pred HHHHHhcCc
Q 044157 246 ALVFVASGD 254 (481)
Q Consensus 246 iii~~~~~~ 254 (481)
......-++
T Consensus 166 ~~~~~~~p~ 174 (416)
T COG1914 166 YVAFVAPPP 174 (416)
T ss_pred HHHhhcCCC
Confidence 444333333
No 69
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.70 E-value=0.00015 Score=77.41 Aligned_cols=145 Identities=12% Similarity=0.147 Sum_probs=94.7
Q ss_pred hhccCCCcHHHHHHHHHHHHHhH-HHhHHHHHHHhhchHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhcccCCCCCCH
Q 044157 84 TLKRESGSLSSAIFLVAGTTVGA-GILAIPAVTQEAGFLASAVAVI---LCWIFMVVTGLLIAEVNVNTMCELGSGGVSL 159 (481)
Q Consensus 84 ~~~~~~~s~~~a~~~iigt~IGa-GIL~LP~~~a~~G~~~~~i~li---l~~~~~~~t~~~l~el~~~~~~~~g~~~~s~ 159 (481)
-...|+.+.+-..+....+..++ -++++|....+.|+...++... +..+...+.+..+.+..++ ++..|.
T Consensus 34 ~~~gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~------~~~~T~ 107 (493)
T COG0591 34 FLGGRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA------RGATTI 107 (493)
T ss_pred hccCCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cCCccH
Confidence 34577778887777777777774 4668999988888765544433 2223333333334444422 136799
Q ss_pred HHHHHHHhC-hhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHH
Q 044157 160 VSMAMRTIG-TVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANG 234 (481)
Q Consensus 160 ~~~a~~~~G-~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~ 234 (481)
.|+.++-|| ++.+.+.++...+....-+.+-+.+.+..++..+|++.+....+...+......+|..|.+.+-..
T Consensus 108 ~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~ 183 (493)
T COG0591 108 PDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISYVTGILIGALIVALYTFLGGLRAVVWTDF 183 (493)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHHHHHHcChhHHHHHHH
Confidence 999999999 888988888877776666666677888888778888877655554444444444543355444433
No 70
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.66 E-value=3.8e-05 Score=78.66 Aligned_cols=246 Identities=17% Similarity=0.129 Sum_probs=122.1
Q ss_pred HHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHH
Q 044157 136 VTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSL 215 (481)
Q Consensus 136 ~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~l 215 (481)
...+.+-|++.|+.... +++..|..++-+||+...+..+...+.......+-..+.+.-++.++++|.+.+.++..+
T Consensus 24 ~~~~~~q~~~~R~~~~T---g~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g~~~~~~~~~~~~ 100 (358)
T PF01566_consen 24 LLKYVFQEMAARLGIVT---GKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFGIPLWIWVLLVAV 100 (358)
T ss_pred HHHHHHHHHHHHHhhhc---CCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHH
Confidence 34444566666654322 457888889999998887777666555444444545555555665667888777766655
Q ss_pred HHHHHHh--hChhhHHHhHHHHHHHHHHHHHHHHHHHhcCccc--ccccc-cc-cc-cchhhhhhHHhhhccCcch--HH
Q 044157 216 ILGGLCY--FGSQRFIGAANGALVVGIIISFTALVFVASGDLQ--WNALL-KA-NF-EAVPMSIPIIALSFVYQNV--VP 286 (481)
Q Consensus 216 i~~~i~~--lg~~k~~~~~~~i~~~~~i~~l~iii~~~~~~~~--~~~l~-~~-~~-~~i~~ai~vi~~af~~~~~--v~ 286 (481)
....+.+ .+..|.++++..+++..+.+.++.......++.. .+++. |. +. ..+..+++.+=...+-++. -+
T Consensus 101 ~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~~~~~~valiGttv~p~~lf~~s 180 (358)
T PF01566_consen 101 IAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPGSLLFAVALIGTTVMPHNLFLHS 180 (358)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchhHHHHHHHHHHHhhhHHHHHHHH
Confidence 5555555 4545778888777777665555444433333321 11222 21 11 2222222222111112211 01
Q ss_pred HhHHhhc--c--C-----hhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCCCcchhHHHhhh-cC-CcHHHHHHH
Q 044157 287 VLCTNLE--G--N-----LSKVRTAIVVGTSIPLGLFLVWNAVILGSISGLEMSSGQIVDPIQQLRS-SN-GAVGPIIDV 355 (481)
Q Consensus 287 ~i~~~~~--~--~-----~k~~~kai~~g~~i~~v~Yll~~~~v~G~~~~~~~~~~~~~~~l~~l~~-~~-~~~~~iv~~ 355 (481)
....|.+ . + .|..++-...|+.+..++-..+.....+.+..+....++..|..+.+.. .+ ++...+..+
T Consensus 181 ~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~i 260 (358)
T PF01566_consen 181 SLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEVETAAQAAQALEPLLGSPWARYLFAI 260 (358)
T ss_pred HHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHhcCchHHHHhHHH
Confidence 1222211 1 0 1222233334443322221111111111111111111333455555554 35 466666666
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhcCCCC
Q 044157 356 FSFLAIATSYIGFILGLSDFLADLLKLPS 384 (481)
Q Consensus 356 ~~~~ai~ts~~~~~l~l~~~l~~~~~~~~ 384 (481)
..+.+..+|.+....+....+.|.++++.
T Consensus 261 gl~~a~fss~i~~~~~~~~~~~~~~~~~~ 289 (358)
T PF01566_consen 261 GLFAAGFSSSITATLAGAYVLADFLGWRW 289 (358)
T ss_pred HHHHHHHhhHHHhccccceehHhhhcCCC
Confidence 66667777777777776667788887653
No 71
>PRK09395 actP acetate permease; Provisional
Probab=98.64 E-value=0.00038 Score=75.52 Aligned_cols=146 Identities=12% Similarity=0.103 Sum_probs=94.2
Q ss_pred hccCCCcHHHHHHHHHHHHHhHHHh-HHHHHHHhhchHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcccCCCCCCHHHH
Q 044157 85 LKRESGSLSSAIFLVAGTTVGAGIL-AIPAVTQEAGFLASAVAVILCWIFMV-VTGLLIAEVNVNTMCELGSGGVSLVSM 162 (481)
Q Consensus 85 ~~~~~~s~~~a~~~iigt~IGaGIL-~LP~~~a~~G~~~~~i~lil~~~~~~-~t~~~l~el~~~~~~~~g~~~~s~~~~ 162 (481)
...|+.++|...+.+++|.++++.+ +.|......|+...+. .+++.+.+ ...+.++ .+.++. +..++.|+
T Consensus 66 ~agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~--~~~~~~g~~~~~~~~~---~~~r~~---g~~T~~d~ 137 (551)
T PRK09395 66 TAGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIY--SIGFLVGWPIILFLIA---ERLRNL---GKYTFADV 137 (551)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHH--HHHHHHHHHHHHHHHH---HHHhhC---CCccHHHH
Confidence 4478899999999999999998755 8898877778643221 12222211 1122233 233321 25789999
Q ss_pred HHHHhC-hhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHH
Q 044157 163 AMRTIG-TVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVV 238 (481)
Q Consensus 163 a~~~~G-~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~ 238 (481)
.++-|| |..+.+.++...+....-..+-..+.|..++.++|+|.+.+.++..++.......|..|.+.+.+.+=.+
T Consensus 138 l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~i 214 (551)
T PRK09395 138 ASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGLNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAV 214 (551)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 999888 5577777776555444434444567788888888999888777776666666667655775555544333
No 72
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.63 E-value=0.00056 Score=73.37 Aligned_cols=152 Identities=10% Similarity=0.047 Sum_probs=88.4
Q ss_pred hccCCCcHHHHHHHHHHHHHhHHHh-HHHHHHHhhchHHHHHHHHHHHHHH-HHHHHHHHH-HhhhhhcccCCCCCCHHH
Q 044157 85 LKRESGSLSSAIFLVAGTTVGAGIL-AIPAVTQEAGFLASAVAVILCWIFM-VVTGLLIAE-VNVNTMCELGSGGVSLVS 161 (481)
Q Consensus 85 ~~~~~~s~~~a~~~iigt~IGaGIL-~LP~~~a~~G~~~~~i~lil~~~~~-~~t~~~l~e-l~~~~~~~~g~~~~s~~~ 161 (481)
...|+.++|-..+.+.+|.+++..+ +.|....+.|+...+.. +...+. ......++. +.....++ .+..+..|
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~--~~~~~~~~l~~~~~~~~l~~~~~~~--~~~~T~~e 112 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISESWIA--IGLTLGAWINWKLVAGRLRVHTEYN--NNALTLPD 112 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh--cCceeHHH
Confidence 4478899999999999999999866 78988878886432211 111111 111111111 11110001 13568999
Q ss_pred HHHHHhChh---hhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHH
Q 044157 162 MAMRTIGTV---GVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVV 238 (481)
Q Consensus 162 ~a~~~~G~~---~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~ 238 (481)
+.++-||++ .+.+..+...+....-+.+-..+.+..++.++|+|.+.+.++..++......+|..|.+.....+=..
T Consensus 113 ~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~~~~iii~~~iv~iYt~~GGl~aV~~TD~iQ~~ 192 (502)
T PRK15419 113 YFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSYETALWAGAAATILYTFIGGFLAVSWTDTVQAS 192 (502)
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 999999964 44444444333322222333346677888888999887776666666666666655666555544443
Q ss_pred HH
Q 044157 239 GI 240 (481)
Q Consensus 239 ~~ 240 (481)
.+
T Consensus 193 im 194 (502)
T PRK15419 193 LM 194 (502)
T ss_pred HH
Confidence 33
No 73
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.63 E-value=0.0002 Score=77.75 Aligned_cols=142 Identities=13% Similarity=0.082 Sum_probs=92.1
Q ss_pred hccCCCcHHHHHHHHHHHHHhHHH-hHHHHHHHhhchHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhcccCCCCCCHHHH
Q 044157 85 LKRESGSLSSAIFLVAGTTVGAGI-LAIPAVTQEAGFLASAVAVILCWIF-MVVTGLLIAEVNVNTMCELGSGGVSLVSM 162 (481)
Q Consensus 85 ~~~~~~s~~~a~~~iigt~IGaGI-L~LP~~~a~~G~~~~~i~lil~~~~-~~~t~~~l~el~~~~~~~~g~~~~s~~~~ 162 (481)
...|+.++|-....+.+|.++++. ++.|......|+...... +.+.+ ....++.+++..++.. ..+.+|+
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~--~g~~~~~~~~~~~~~p~~rr~~------~~T~~e~ 100 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYL--MGWTGGYVLLALLLAPYLRKFG------KYTVPDF 100 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHHHHHHCC------CccHHHH
Confidence 447889999999999999998874 478987777776432221 12211 1223445555554443 5689999
Q ss_pred HHHHhChh-hhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHH
Q 044157 163 AMRTIGTV-GVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANG 234 (481)
Q Consensus 163 a~~~~G~~-~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~ 234 (481)
-++-||++ .+.+..+...+....-..+-..+.+..++.++|+|.+...++..++......+|..|.+.....
T Consensus 101 l~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi~~~~~iii~~~i~~iYt~~GG~~aV~~TD~ 173 (552)
T TIGR03648 101 IGDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEVDFETGVFIGMAIVFFYAVLGGMKGVTWTQV 173 (552)
T ss_pred HHHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99989854 5666666554444433444445677788888899988877666666666666665466644433
No 74
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.59 E-value=0.00041 Score=71.82 Aligned_cols=190 Identities=13% Similarity=0.079 Sum_probs=98.2
Q ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhH
Q 044157 118 AGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDI 197 (481)
Q Consensus 118 ~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~ 197 (481)
.++..+++..+++-++...-..+......++ +-++..+.|..||++|..+..+...+...+=...-....++.
T Consensus 26 L~~~~ai~aiilG~~i~~~~~~l~~~~G~~~-------Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~ 98 (386)
T TIGR02358 26 LGLTRGLLAILLGHLVGVLLLSAAGVIGADT-------GLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKA 98 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhccc-------CcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555565555555444333232333333333 457999999999999998877766554432211212234455
Q ss_pred hhhhh----cC-chHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHHHHHHHHHhcCcccccccc-cccccchhhh
Q 044157 198 LTNFL----GI-PLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTALVFVASGDLQWNALL-KANFEAVPMS 271 (481)
Q Consensus 198 l~~~~----~l-p~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~l~iii~~~~~~~~~~~l~-~~~~~~i~~a 271 (481)
++..+ +. +...+..++.++.....+.|. |.+.+++.+..+.+.+..+........+.+.+... +.+......+
T Consensus 99 l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~G~-~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 177 (386)
T TIGR02358 99 ASLLGGRLFGEESPMLWILIVGILVTLWLLSGP-LAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWNRAGDMSFAVA 177 (386)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcCCCCCccHHHH
Confidence 55443 21 223333344344444556777 88999999998887766655443333332221111 1111122222
Q ss_pred hhHHhhh-ccCcchHHHhHHhhccChhhHHHHHHHHHHHHHHHHHH
Q 044157 272 IPIIALS-FVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLGLFLV 316 (481)
Q Consensus 272 i~vi~~a-f~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v~Yll 316 (481)
+....-. -++....|...++. +++|+.-++..+|..+...+..+
T Consensus 178 ~~~~~~~~~swa~~~~DysRy~-k~~~~~~~~~~~G~~i~~~~~~~ 222 (386)
T TIGR02358 178 VELVIAMPLSWLPLIADYTRFA-RNPRHVFLGTVLGYFIGSCWMYF 222 (386)
T ss_pred HHHHHHHHHHHHHHccchhhhc-CCCcceehHHHHHHHHHHHHHHH
Confidence 2221111 12223356666665 45677777777777666665544
No 75
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.57 E-value=0.00069 Score=73.41 Aligned_cols=147 Identities=15% Similarity=0.144 Sum_probs=92.9
Q ss_pred ccCCCcHHHHHHHHHHHHHhHH-HhHHHHHHHhhchHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcccCCCCCCHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAG-ILAIPAVTQEAGFLASAVAVILCWIFMV-VTGLLIAEVNVNTMCELGSGGVSLVSMA 163 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaG-IL~LP~~~a~~G~~~~~i~lil~~~~~~-~t~~~l~el~~~~~~~~g~~~~s~~~~a 163 (481)
..|+.++|...+.+.++.+++. .++.|......|+...+.. +++.+.+ ...+.+++-..+. +..+..|+.
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~--~g~~~~~~i~~~~~a~~lrr~------g~~T~~d~l 136 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYS--LGFLVGWPIILFLIAERLRNL------GRYTFADVA 136 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHHHHHHc------CCccHHHHH
Confidence 4778888988888888888875 5689988878786432211 2222222 1223344433332 256899998
Q ss_pred HHHhC-hhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHH
Q 044157 164 MRTIG-TVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGI 240 (481)
Q Consensus 164 ~~~~G-~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~ 240 (481)
++=|| |..+.+.++...+....-+.+-..+.|..++.++|+|.+...++..++......+|..|.+.+.+.+=...+
T Consensus 137 ~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~im 214 (549)
T TIGR02711 137 SYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNYHVAVVLVGILMVMYVLFGGMLATTWVQIIKAVLL 214 (549)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88887 556777666555444333444556777888888899988877776666666666665566666655444433
No 76
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=98.52 E-value=0.00088 Score=69.24 Aligned_cols=157 Identities=17% Similarity=0.200 Sum_probs=93.0
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHh-HHHHHHHhhchHHHHHHHHHHHHHHHHHH-HHHHHH--hhhhhcc--cCCCCCCH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGIL-AIPAVTQEAGFLASAVAVILCWIFMVVTG-LLIAEV--NVNTMCE--LGSGGVSL 159 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL-~LP~~~a~~G~~~~~i~lil~~~~~~~t~-~~l~el--~~~~~~~--~g~~~~s~ 159 (481)
+++..|-+++.+...+..+|.|=. +...+++-.| .++ +.-.|+.+..++ ..++|. +.+++++ +|+-..+-
T Consensus 15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GG-PGA---iFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP 90 (416)
T PF01235_consen 15 EEGGISPFQALCTALAGTVGTGNIAGVATAIAIGG-PGA---IFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGP 90 (416)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhc-hhH---HHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecH
Confidence 355689999999999999999955 5555665444 233 333333332222 123443 3344432 22223456
Q ss_pred HHHHHHHhChh-hhHHHHHHHHHHHHHHH--HHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHH
Q 044157 160 VSMAMRTIGTV-GVQIASWSYIFIHYTLL--VAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGAL 236 (481)
Q Consensus 160 ~~~a~~~~G~~-~~~~~~~~~~~~~~~~~--~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~ 236 (481)
..|.++.+|.+ .+.+..++ .+..++.. ..-.-...+.+++.+++|.|...++.+++...+.+-|. |.+.++...+
T Consensus 91 ~yyi~~gl~~k~la~~fai~-~~~~~~~~~~~~Q~nsi~~~~~~~f~i~~~~~gi~l~~l~~~vi~GGi-krI~~v~~~l 168 (416)
T PF01235_consen 91 MYYIEKGLGSKWLAILFAIF-LIIAFGIGFNMVQANSIADALSSAFGIPPWITGIILAILVALVIFGGI-KRIAKVSEKL 168 (416)
T ss_pred HHHHHHHhccchHHHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHcch-hHHHHHHHHH
Confidence 66778888764 34444433 22222221 11112334555666788888887777777666665556 8999999999
Q ss_pred HHHHHHHHHHHH
Q 044157 237 VVGIIISFTALV 248 (481)
Q Consensus 237 ~~~~i~~l~iii 248 (481)
++.+.+..++..
T Consensus 169 VP~Ma~~Yi~~~ 180 (416)
T PF01235_consen 169 VPFMAILYILGG 180 (416)
T ss_pred HHHHHHHHHHHH
Confidence 999877655543
No 77
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.38 E-value=0.00069 Score=69.76 Aligned_cols=284 Identities=18% Similarity=0.161 Sum_probs=138.2
Q ss_pred CcHHHHHHHHHHHHHhHH-HhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhC
Q 044157 90 GSLSSAIFLVAGTTVGAG-ILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIG 168 (481)
Q Consensus 90 ~s~~~a~~~iigt~IGaG-IL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G 168 (481)
.|-.+-+...+|.+||.| +---|+..++.|-. +.++.-+...+..---.+++|...-...+. ...++|.+... +
T Consensus 9 ~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGg-AFll~yli~~l~~GiPlli~Ef~iGr~~~~-~~~~a~~~l~~---~ 83 (439)
T COG0733 9 SSRLGFILAAAGSAVGLGNIWRFPYMAGENGGG-AFLLPYLIFLLLVGIPLLLAEFAIGRRGRK-NAVGAFRKLAP---K 83 (439)
T ss_pred hhHHHHHHHHHHHHhcccccccCCeEeeecCcc-hHHHHHHHHHHHHhHHHHHHHHHhhhhcCC-ChhHHHHHhcc---C
Confidence 455677888899999999 55899988876643 333333333444455567788887443210 11234444443 2
Q ss_pred hhhhHHHHH-----HHHHHHHHH----HHHHHH--Hh------HhHhhhhhc--Cc-hH---HHHHHHHHHHHHHHhhCh
Q 044157 169 TVGVQIASW-----SYIFIHYTL----LVAYVA--RS------SDILTNFLG--IP-LW---ESATLFSLILGGLCYFGS 225 (481)
Q Consensus 169 ~~~~~~~~~-----~~~~~~~~~----~~ay~~--~~------g~~l~~~~~--lp-~~---~~~i~~~li~~~i~~lg~ 225 (481)
|++.++-.+ ......|.. ...|.. .. ++...+.+. .. .+ .+..++.++...+...|.
T Consensus 84 ~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV 163 (439)
T COG0733 84 KKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGV 163 (439)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhH
Confidence 332222111 111112222 122331 11 122222221 11 11 122334444445666898
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHhcC--cc----------cccccccccccchhhhhhHHhhhcc-CcchHHHhHHhh
Q 044157 226 QRFIGAANGALVVGIIISFTALVFVASG--DL----------QWNALLKANFEAVPMSIPIIALSFV-YQNVVPVLCTNL 292 (481)
Q Consensus 226 ~k~~~~~~~i~~~~~i~~l~iii~~~~~--~~----------~~~~l~~~~~~~i~~ai~vi~~af~-~~~~v~~i~~~~ 292 (481)
.|.++|.|.++++.+.+.++++++.... .. |++.+. |++....|++=.+|+.+ +...+-+..+++
T Consensus 164 ~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~--~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL 241 (439)
T COG0733 164 KKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLT--DPKVWLAALGQAFFSLSLGFGIMITYSSYL 241 (439)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcC--chhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7889999999999988877777664332 11 111211 23445566776666653 333445556677
Q ss_pred ccChhhHHHHHHHHHHHHHHHHHHHH---HHHHhccccccccCCCc-----chhHHHhhhcCCcHHHHHHHHHHHHHHHH
Q 044157 293 EGNLSKVRTAIVVGTSIPLGLFLVWN---AVILGSISGLEMSSGQI-----VDPIQQLRSSNGAVGPIIDVFSFLAIATS 364 (481)
Q Consensus 293 ~~~~k~~~kai~~g~~i~~v~Yll~~---~~v~G~~~~~~~~~~~~-----~~~l~~l~~~~~~~~~iv~~~~~~ai~ts 364 (481)
+ +++|+++.-......-..+=++.. +..++.++.+..+++.+ ++..+++. .+..+..+.-....+|-+||
T Consensus 242 ~-k~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp-~G~~~~~lFFl~l~fAalTS 319 (439)
T COG0733 242 S-KKSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMP-LGTLFGILFFLLLLFAALTS 319 (439)
T ss_pred C-cccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCc-hhHHHHHHHHHHHHHHHHHH
Confidence 4 556666533322222221111111 22334444332223322 12222221 12222222223334666778
Q ss_pred HHHHHHhHHHHHHhhcCC
Q 044157 365 YIGFILGLSDFLADLLKL 382 (481)
Q Consensus 365 ~~~~~l~l~~~l~~~~~~ 382 (481)
.+.........+.|.++.
T Consensus 320 ~iSmlE~~va~l~~~~~~ 337 (439)
T COG0733 320 AISMLEVLVAALIDKFGI 337 (439)
T ss_pred HHHHHHHHHHHHHHHhCc
Confidence 777777776677776665
No 78
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=98.31 E-value=3.5e-05 Score=81.14 Aligned_cols=221 Identities=14% Similarity=0.163 Sum_probs=102.7
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHHHHH--hhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPAVTQ--EAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMA 163 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a--~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a 163 (481)
++|+.+.++...+-.+..+....+.+-.... ..++..+++.++++-++...-.........|+ +-+...++
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~-------Gl~~~v~s 77 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALMGIIGPRT-------GLPTMVLS 77 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC----------HHHHT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhccccccc-------CCCchhcc
Confidence 4566777888877777777666654444332 34556666666655554433333344444443 45788899
Q ss_pred HHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc--Cc---------------hHHHHHHHHHHHHHHHhhChh
Q 044157 164 MRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG--IP---------------LWESATLFSLILGGLCYFGSQ 226 (481)
Q Consensus 164 ~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~--lp---------------~~~~~i~~~li~~~i~~lg~~ 226 (481)
|..||.+|..+..+...+...+=...-....++.+...++ .+ .+++..++.++.....+.|.
T Consensus 78 R~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~- 156 (440)
T PF02133_consen 78 RASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIYGM- 156 (440)
T ss_dssp TTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHCTHH-
T ss_pred hhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhcCH-
Confidence 9999999999888776655443222222334555555442 11 12222333333333444555
Q ss_pred hHHHhHHHHHHHHHHHHHHHHHHHhcCccccccccc--ccc---cchhhhhhHHhhhcc-CcchHHHhHHhhccChhhHH
Q 044157 227 RFIGAANGALVVGIIISFTALVFVASGDLQWNALLK--ANF---EAVPMSIPIIALSFV-YQNVVPVLCTNLEGNLSKVR 300 (481)
Q Consensus 227 k~~~~~~~i~~~~~i~~l~iii~~~~~~~~~~~l~~--~~~---~~i~~ai~vi~~af~-~~~~v~~i~~~~~~~~k~~~ 300 (481)
+.+.+++.+..+......+........+.+.....+ .+. +.+..++...+-.+. .....+...++++ ++++-.
T Consensus 157 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~-~~~~~~ 235 (440)
T PF02133_consen 157 KALRRLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAK-SDTSAW 235 (440)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC---HHHHH
T ss_pred HHHHhHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCC-CCCCcE
Confidence 677777776666544443333222222222211111 111 112333322221111 1122346666664 556666
Q ss_pred HHHHHHHHHHHHHHH
Q 044157 301 TAIVVGTSIPLGLFL 315 (481)
Q Consensus 301 kai~~g~~i~~v~Yl 315 (481)
+...++.........
T Consensus 236 ~~~~~~~~~~~~~~~ 250 (440)
T PF02133_consen 236 WGFWLGFPGGFIPFV 250 (440)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred EEEeehhhhHHHHHH
Confidence 666666655444433
No 79
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.30 E-value=0.0022 Score=66.59 Aligned_cols=318 Identities=15% Similarity=0.165 Sum_probs=161.5
Q ss_pred cHHHHHHHHHHHHHhHHHhHHHHHHH---hhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHh
Q 044157 91 SLSSAIFLVAGTTVGAGILAIPAVTQ---EAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTI 167 (481)
Q Consensus 91 s~~~a~~~iigt~IGaGIL~LP~~~a---~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~ 167 (481)
..+...+.+.+.-.|||=+-.|-.+. ...|+++.+.+++.+...=. ++-.+.... +.++++++++.-
T Consensus 4 ~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~----Lgvia~~~~------~~~~~~l~~~v~ 73 (427)
T PF05525_consen 4 DILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPL----LGVIAVAKS------GGGIEDLASRVG 73 (427)
T ss_pred hhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHH----HHHHHHhhc------CCCHHHHhcccC
Confidence 45667788899999999888886653 34466666666665553222 222222221 237899987764
Q ss_pred ChhhhHHHHHHHHHHH--HH----HHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHH
Q 044157 168 GTVGVQIASWSYIFIH--YT----LLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGII 241 (481)
Q Consensus 168 G~~~~~~~~~~~~~~~--~~----~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i 241 (481)
-+.+..+....|.... ++ ..++|..+....+..--+++.....++|..+...+.+.+. |.+|++-+++++.++
T Consensus 74 ~~f~~if~~~i~l~IGP~~aiPRtaa~sfe~~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~~p~-kivd~iGk~LTP~LL 152 (427)
T PF05525_consen 74 PKFALIFTILIYLSIGPLFAIPRTAAVSFEMGIAPFFPENSNISLLIFSIIFFAITYLLSLNPS-KIVDRIGKFLTPILL 152 (427)
T ss_pred cHHHHHHHHHHHHHHHhcccCcchhhhhHHHhhhccCCcccccchhhhhHHHHHHHHHHHhchh-hHHHHHHHHHHHHHH
Confidence 4444444433332111 00 1233433322222210002223333333333333444455 899999999999998
Q ss_pred HHHHHHHHHhcCc--ccccccc----cccc-cchh------hhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHH
Q 044157 242 ISFTALVFVASGD--LQWNALL----KANF-EAVP------MSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTS 308 (481)
Q Consensus 242 ~~l~iii~~~~~~--~~~~~l~----~~~~-~~i~------~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~ 308 (481)
+.++++++.++.+ .+..... +..+ +++. -+++- ..|+. .++..+.+.-.+|+|+..|....+-.
T Consensus 153 ~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laa--l~Fg~-iIi~~i~~~g~~~~k~~~~~~~~ag~ 229 (427)
T PF05525_consen 153 ILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAA--LAFGI-IIINAIRQKGYKDKKEIKKYTIKAGL 229 (427)
T ss_pred HHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHH--HHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 8888777665422 1111100 0001 1111 11111 22211 12223322222356666665554433
Q ss_pred H----HHHHHHHHHHHHHhcccccc-ccCCCcchhHHHhhh--cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Q 044157 309 I----PLGLFLVWNAVILGSISGLE-MSSGQIVDPIQQLRS--SNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLK 381 (481)
Q Consensus 309 i----~~v~Yll~~~~v~G~~~~~~-~~~~~~~~~l~~l~~--~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~ 381 (481)
+ -.++|.. ...+|...... ..+.|-.+++..+.+ .++....+..+...+|.+|+.++..-+..|+++|.++
T Consensus 230 ia~~lL~~IY~g--L~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~ 307 (427)
T PF05525_consen 230 IAGILLALIYGG--LAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFP 307 (427)
T ss_pred HHHHHHHHHHHH--HHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3 3334432 44555443322 112233455554443 2455556777888889999999988888888888777
Q ss_pred CCCCCCCcchh-hHhhHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 044157 382 LPSGQSSPQPY-LLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSW 435 (481)
Q Consensus 382 ~~~~~~r~~~~-~l~~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~ 435 (481)
+. +...+ .+..+...+++.+. ++.++.+..- ++.++.|....+
T Consensus 308 ki----sY~~~v~i~~i~S~~ian~G---l~~Ii~~s~P----iL~~iYP~~IvL 351 (427)
T PF05525_consen 308 KI----SYKVWVIIFTIFSFIIANLG---LDQIIKISVP----ILMFIYPVAIVL 351 (427)
T ss_pred cc----ChHHHHHHHHHHHHHHHHhC---HHHHHHHHHH----HHHHHhHHHHHH
Confidence 21 11122 22234455666654 5566665544 456667766544
No 80
>PRK10484 putative transporter; Provisional
Probab=98.23 E-value=0.0075 Score=65.05 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=56.9
Q ss_pred hhccCCCcHHHHHHHHHHHHHhHHHh-HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHH
Q 044157 84 TLKRESGSLSSAIFLVAGTTVGAGIL-AIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSM 162 (481)
Q Consensus 84 ~~~~~~~s~~~a~~~iigt~IGaGIL-~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~ 162 (481)
-...|+.++|-..+.+.+|.++++.+ +.|....+.|+...... ....+.....++.++.-..|. +..+..|+
T Consensus 34 flagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~-~~~~~~~~~~~~~~~p~~~r~------~~~T~~e~ 106 (523)
T PRK10484 34 FLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWE-VTAAIALIILALIFLPRYLKS------GITTIPDF 106 (523)
T ss_pred eecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHH-HHHHHHHHHHHHHHHHHHHhc------CCccHHHH
Confidence 34578899999999999999998855 78887777785432111 111111112333333332222 36799999
Q ss_pred HHHHhChhhhHHHHHHHH
Q 044157 163 AMRTIGTVGVQIASWSYI 180 (481)
Q Consensus 163 a~~~~G~~~~~~~~~~~~ 180 (481)
.++-||+..+.+....+.
T Consensus 107 l~~Ryg~~~~~~~~~~~~ 124 (523)
T PRK10484 107 LEERYDKTTRRIVSILFL 124 (523)
T ss_pred HHHhcCchhHHHHHHHHH
Confidence 999999987776655443
No 81
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=98.21 E-value=0.0073 Score=62.24 Aligned_cols=167 Identities=16% Similarity=0.179 Sum_probs=98.5
Q ss_pred HHhhcccchhhhccCCCcHHHHHHHHHHHHHhHHHhH-HHHHHHhhchHHHHHHHHHHHHHHHHHHH-HHHHHh--hhhh
Q 044157 74 ERLFSNLNQATLKRESGSLSSAIFLVAGTTVGAGILA-IPAVTQEAGFLASAVAVILCWIFMVVTGL-LIAEVN--VNTM 149 (481)
Q Consensus 74 ~~~~~~~~~~~~~~~~~s~~~a~~~iigt~IGaGIL~-LP~~~a~~G~~~~~i~lil~~~~~~~t~~-~l~el~--~~~~ 149 (481)
+.+|+++.++ .+++..|-+++.+...+..+|+|=.+ ...+++-.| .++ +.-.|+...+++. .++|.. ..++
T Consensus 48 k~~~~~~~~~-~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GG-PGA---vFWMWi~Al~Gmat~f~E~~La~~Yr 122 (452)
T COG1115 48 KLLFGSRKGK-AGKGGVSSFQALMTSLAARVGTGNIAGVATAIALGG-PGA---VFWMWIVALFGMATKFAESTLAQKYR 122 (452)
T ss_pred HHHhcCcccC-CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCC-Ccc---HHHHHHHHHHHHHHHHHHHHHHhhee
Confidence 3445554433 45666899999999999999999554 555555444 333 3333433333221 233333 3333
Q ss_pred cc--cCCCCCCHHHHHHHHhCh-hhhHHHHHHHHHHHHH--HHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhC
Q 044157 150 CE--LGSGGVSLVSMAMRTIGT-VGVQIASWSYIFIHYT--LLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFG 224 (481)
Q Consensus 150 ~~--~g~~~~s~~~~a~~~~G~-~~~~~~~~~~~~~~~~--~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg 224 (481)
++ +|+-.++-.-|.++.+|. |.+.+.++. .+..|+ ....-.-...+.+++-+++|.+...+..+++.+.+.+-|
T Consensus 123 ~kd~~G~~~GGP~yYi~kGl~~r~l~v~FA~~-li~afg~i~n~vQ~NsIa~a~~~af~~~~~~~gi~la~l~~~VI~GG 201 (452)
T COG1115 123 VKDKDGEYRGGPAYYIEKGLGMRWLAVLFAFA-LIAAFGFIGNGVQSNSIASALANAFGIPPLVTGIVLALLVALVIFGG 201 (452)
T ss_pred EeCCCCCCcCChHHHHHhhcCCcHHHHHHHHH-HHHHHHhhcchhhHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcc
Confidence 22 222223344455666664 555555532 233333 222223456677788888998888877777777666666
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHH
Q 044157 225 SQRFIGAANGALVVGIIISFTAL 247 (481)
Q Consensus 225 ~~k~~~~~~~i~~~~~i~~l~ii 247 (481)
. |.++++.+..++.+.+..++.
T Consensus 202 i-~rIa~v~~~vVPfMA~~Yi~~ 223 (452)
T COG1115 202 I-KRIAKVSSKVVPFMAILYVLV 223 (452)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHH
Confidence 6 889999999999887755443
No 82
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=98.21 E-value=0.0075 Score=62.33 Aligned_cols=152 Identities=18% Similarity=0.124 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhHHHhHHHHHH-HhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChhhhH
Q 044157 95 AIFLVAGTTVGAGILAIPAVT-QEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQ 173 (481)
Q Consensus 95 a~~~iigt~IGaGIL~LP~~~-a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~~~~ 173 (481)
-.+++..+-+|.|-++--... ++.|+-.-+. -+++...+..+-|++.|.... .+.+..|..++.++|+...
T Consensus 9 Pg~lva~a~idPG~i~t~~~aGa~fGy~LLW~-----llls~~~~~~~Q~~aaRlg~v---Tg~~l~~~~r~~~~~~~~~ 80 (390)
T TIGR01197 9 PGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWV-----LLLSNIMALLLQRLCARLGVV---TGLDLAEVCREHYPKVPRI 80 (390)
T ss_pred hHHHHHHHhcCchHHHHHHHHHHHhCHHHHHH-----HHHHHHHHHHHHHHHHHheee---cCCCHHHHHHHHCCCchHH
Confidence 344455556777766532211 3455432222 223344555677777776532 2457999999999987665
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHH--HHHHHHHhhChhhHHHhHHHHHHHHHHHHHHHHHHHh
Q 044157 174 IASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFS--LILGGLCYFGSQRFIGAANGALVVGIIISFTALVFVA 251 (481)
Q Consensus 174 ~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~--li~~~i~~lg~~k~~~~~~~i~~~~~i~~l~iii~~~ 251 (481)
.......+...+...+-..+.+.-++-++++|.+.+..+.. .+...+.+.+..|.++++...+...+.+.++......
T Consensus 81 ~~~~~~~l~ii~~~~~e~~G~a~al~ll~g~p~~~~v~~~~~~~~~~~~~~~~~yr~~E~~~~~lv~~m~~~f~~~~~~~ 160 (390)
T TIGR01197 81 TLWILAELAIIATDMAEVIGTAIALNLLSHIPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELFYA 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhCCceeHHHHHHHHHHHHHHHHHHHHhee
Confidence 54433322222223333344444455566888766544321 1212223344446777776666555555555444333
Q ss_pred cCc
Q 044157 252 SGD 254 (481)
Q Consensus 252 ~~~ 254 (481)
-|+
T Consensus 161 ~P~ 163 (390)
T TIGR01197 161 KPG 163 (390)
T ss_pred CCC
Confidence 333
No 83
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=98.02 E-value=0.027 Score=58.67 Aligned_cols=314 Identities=16% Similarity=0.187 Sum_probs=154.7
Q ss_pred cHHHHHHHHHHHHHhHHHhHHHHHHH-hhc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHh
Q 044157 91 SLSSAIFLVAGTTVGAGILAIPAVTQ-EAG--FLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTI 167 (481)
Q Consensus 91 s~~~a~~~iigt~IGaGIL~LP~~~a-~~G--~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~ 167 (481)
..+...+.+++.-.|||=|-.|-.+. ++| |+.+.+.+++.+... =+++-.+.... ++++++++++.-
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~Vgl----PlLgiiava~~------~g~~~~l~~rv~ 78 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGL----PVLTVVALAKV------GGGVDSLSTPIG 78 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHH----HHHHHHHHhhc------CCCHHHHhhhcc
Confidence 56778888999999999888887653 333 666655555554422 11222222221 247888877764
Q ss_pred ChhhhHHHHHHHHHHHHHH--------HHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHH
Q 044157 168 GTVGVQIASWSYIFIHYTL--------LVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVG 239 (481)
Q Consensus 168 G~~~~~~~~~~~~~~~~~~--------~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~ 239 (481)
.+.+..+....+.. .|- .++|..+..-.+.+. +.+.....++|..+...+.+.+. |.+|++-+++++.
T Consensus 79 ~~f~~~f~~~i~l~--IGP~~aiPRtaavsfEm~i~p~~~~~-~~~~~ifs~iFF~i~~~l~l~p~-klvd~iGK~LTP~ 154 (439)
T PRK15433 79 KVAGVLLATVCYLA--VGPLFATPRTATVSFEVGIAPLTGDS-ALPLFIYSLVYFAIVILVSLYPG-KLLDTVGNFLAPL 154 (439)
T ss_pred hHHHHHHHHHHHHH--HhhccccCCccccchhheeeccCCcc-cHHHHHHHHHHHHHHHHHHcChh-hHHHHhHHHHHHH
Confidence 33333333333221 121 233332222211110 01122222333222223333455 8999999999999
Q ss_pred HHHHHHHHHHHhcCc--ccc----cccccccc-cch------hhhhhHHhhhccCcchHHHhHHh-hccChhhHHHHHHH
Q 044157 240 IIISFTALVFVASGD--LQW----NALLKANF-EAV------PMSIPIIALSFVYQNVVPVLCTN-LEGNLSKVRTAIVV 305 (481)
Q Consensus 240 ~i~~l~iii~~~~~~--~~~----~~l~~~~~-~~i------~~ai~vi~~af~~~~~v~~i~~~-~~~~~k~~~kai~~ 305 (481)
+++.++++++.++.+ .+. +......+ +++ .-+++- ..|+. .++..+.+. . +|+|+..|....
T Consensus 155 LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaa--l~Fg~-iii~~i~~~G~-~~~~~~~k~t~~ 230 (439)
T PRK15433 155 KIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGA--MVFGI-VIVNAARSRGV-TEARLLTRYTVW 230 (439)
T ss_pred HHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHH--HHHHH-HHHHHHHHcCC-CCHHHHHHHHHH
Confidence 988877777654322 111 10100001 111 122222 22221 122333322 3 355666665543
Q ss_pred H----HHHHHHHHHHHHHHHHhccccccccC-CCcchhHHHh-hh-cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 044157 306 G----TSIPLGLFLVWNAVILGSISGLEMSS-GQIVDPIQQL-RS-SNGAVGPIIDVFSFLAIATSYIGFILGLSDFLAD 378 (481)
Q Consensus 306 g----~~i~~v~Yll~~~~v~G~~~~~~~~~-~~~~~~l~~l-~~-~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~ 378 (481)
+ ...-.++|.. ...+|........+ .|-.+.+... .. .+++...+..+...+|.+|+.++...+..+++++
T Consensus 231 ag~ia~~~L~~vY~g--L~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~ 308 (439)
T PRK15433 231 AGLMAGVGLTLLYLA--LFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQ 308 (439)
T ss_pred HHHHHHHHHHHHHHH--HHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 3333344432 44555543221111 1223333222 22 3566777888888899999999999999888888
Q ss_pred hcCCCCCCCCcchhhHhhHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 044157 379 LLKLPSGQSSPQPYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSW 435 (481)
Q Consensus 379 ~~~~~~~~~r~~~~~l~~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~ 435 (481)
.++.+ .|. ...+..+.+..++.+. |+.++.+.- .++.++.|....+
T Consensus 309 ~~~is---Y~~-~v~i~~l~S~~lSn~G---~~~II~~s~----PiL~~iYP~~IvL 354 (439)
T PRK15433 309 YVPLS---YRT-LVFILGGFSMVVSNLG---LSQLIQISV----PVLTAIYPPCIAL 354 (439)
T ss_pred hcCCc---HHH-HHHHHHHHHHHHHHhH---HHHHHHHHH----HHHHHHhHHHHHH
Confidence 76531 111 1122233444454443 556665443 3456666766544
No 84
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=98.02 E-value=5.6e-05 Score=79.31 Aligned_cols=223 Identities=12% Similarity=0.118 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChhhhH
Q 044157 94 SAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQ 173 (481)
Q Consensus 94 ~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~~~~ 173 (481)
....|+.|.++ .|-+++..+++|...+++++.++-.++..|++--...+.|-.- +.++-+.+..+.+|+-.+-
T Consensus 39 ~cmlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~v----k~Gg~yflis~slg~efgg 111 (643)
T KOG2083|consen 39 RCMLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQV----KSGGVYFLISRSLGPEFGG 111 (643)
T ss_pred hhhHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeeccee----ccCcEEEEEEecccccccc
Confidence 45556666654 4578999999999999988888888888888766555554332 2345555667788887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHhhhhhcC-chHH---HHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHHHHHHHH
Q 044157 174 IASWSYIFIHYTLLVAYVARSSDILTNFLGI-PLWE---SATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTALVF 249 (481)
Q Consensus 174 ~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~l-p~~~---~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~l~iii~ 249 (481)
-.++.|.+..-.++..|+++++|.+.++++. +.+. ...+..+++..++..|. +...+++.++.....+++.-.++
T Consensus 112 sigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~~i~gi~~vt~~ill~i~~ag~-~w~~k~q~~ll~il~iai~~f~~ 190 (643)
T KOG2083|consen 112 SIGIIYAFANAVATAMYVVGFAESVAHLFETESKEMIDGIGSVTVLILLAINVAGV-EWEAKLQIVLLLILLIAIADFLV 190 (643)
T ss_pred hhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHHHhcchhHHHHHHHHHhhhccc-hhHHHHHHHHHHHHHHHHHHhhh
Confidence 7788888777777888999999999888842 1111 12233345556777888 89999998887666665555444
Q ss_pred Hhc-Ccc---------cc----ccccccccc---chhhhhhHHhhhccCcchHHHhHHhhccChhhHHHHHHHHHHHHHH
Q 044157 250 VAS-GDL---------QW----NALLKANFE---AVPMSIPIIALSFVYQNVVPVLCTNLEGNLSKVRTAIVVGTSIPLG 312 (481)
Q Consensus 250 ~~~-~~~---------~~----~~l~~~~~~---~i~~ai~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~~g~~i~~v 312 (481)
..+ +.- .. +|+.+ ++. .++..+++.+-+..+.-.=..+..++++|.+.+|+....+......
T Consensus 191 gs~~~~~~~~~g~~~~~a~~~~~n~~~-~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~GaL~Ai~vst~ 269 (643)
T KOG2083|consen 191 GSFFSPNEFSSGFFGYRADIFVENLNP-DIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGALLAIGVSTL 269 (643)
T ss_pred hhccChhhhcccccccchhhcccCCCC-CcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcccchhhhhhhhhh
Confidence 322 110 01 11111 122 3455555555444332222344677877789999999999999999
Q ss_pred HHHHHHHHHHhccc
Q 044157 313 LFLVWNAVILGSIS 326 (481)
Q Consensus 313 ~Yll~~~~v~G~~~ 326 (481)
+|+.+ ....|..+
T Consensus 270 ~yl~~-i~~~Ga~~ 282 (643)
T KOG2083|consen 270 LYLIF-IADLGATP 282 (643)
T ss_pred hhhhh-hhhcccHH
Confidence 99763 34445444
No 85
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.95 E-value=0.022 Score=59.67 Aligned_cols=158 Identities=12% Similarity=0.116 Sum_probs=82.8
Q ss_pred hccCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHH
Q 044157 85 LKRESGSLSSAIFLVAGTTVGAGILAIPAVTQEA--GFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSM 162 (481)
Q Consensus 85 ~~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~--G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~ 162 (481)
.++|+=++++-..+-.+...-.+-..+-...-+. +++-.++.++++-++....+.+..+...++ +.+|...
T Consensus 36 ~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~-------gIpFpv~ 108 (497)
T COG1953 36 AEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKY-------GIPFPVL 108 (497)
T ss_pred cccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCccccc-------CCCchHH
Confidence 3466667776666655554444433322222222 233344444444444333333333333322 4689999
Q ss_pred HHHHhChhhhHHHHH---HHHHHHHHHHHHHHHH--hHhHhhhhh-------------cCc--hHHHHHHHHHHHHHHHh
Q 044157 163 AMRTIGTVGVQIASW---SYIFIHYTLLVAYVAR--SSDILTNFL-------------GIP--LWESATLFSLILGGLCY 222 (481)
Q Consensus 163 a~~~~G~~~~~~~~~---~~~~~~~~~~~ay~~~--~g~~l~~~~-------------~lp--~~~~~i~~~li~~~i~~ 222 (481)
.|..||-++..+-.+ .+....|+. -+|+-+ .--.+..++ |++ .+++-.+|+++-.++.+
T Consensus 109 ~RaSFGi~Ga~~p~l~R~i~A~~WyGv-qty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~ 187 (497)
T COG1953 109 SRASFGIYGANFPALIRAIVAIVWYGV-QTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLF 187 (497)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHH-HHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHh
Confidence 999999987664433 222333333 223211 001122222 111 24555677777777777
Q ss_pred hChhhHHHhHHHHHHHHHHHHHHHHHHHh
Q 044157 223 FGSQRFIGAANGALVVGIIISFTALVFVA 251 (481)
Q Consensus 223 lg~~k~~~~~~~i~~~~~i~~l~iii~~~ 251 (481)
.|. +.++|++.+.-+...+.+..+.+-.
T Consensus 188 ~g~-~~Ir~~~~~a~p~~~~~~~gl~Iw~ 215 (497)
T COG1953 188 KGM-ESIRKFETWAGPLVYIAMLGLAIWA 215 (497)
T ss_pred cCH-HHHHHHHHHhchHHHHHHHHHHHHH
Confidence 887 8899999888877766655555443
No 86
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.84 E-value=0.02 Score=59.20 Aligned_cols=203 Identities=12% Similarity=0.125 Sum_probs=110.3
Q ss_pred hHHHhHHHHHHHhhchHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhcccCCCCCCHHHHHHH-HhChhhhHHHHHHHHHH
Q 044157 105 GAGILAIPAVTQEAGFLASAVAVILCWIFMV-VTGLLIAEVNVNTMCELGSGGVSLVSMAMR-TIGTVGVQIASWSYIFI 182 (481)
Q Consensus 105 GaGIL~LP~~~a~~G~~~~~i~lil~~~~~~-~t~~~l~el~~~~~~~~g~~~~s~~~~a~~-~~G~~~~~~~~~~~~~~ 182 (481)
-+..+.++..+.-.|+- +++ ..++|...+ .-.++++|-..++. ..++.|+... +--+..+.+..+.-.+.
T Consensus 59 aASflGiag~I~~~GYd-G~~-Y~iG~~~Gy~i~~fL~A~~LRk~G------kyT~aD~~a~Ry~~~~~R~~aa~~ti~v 130 (529)
T COG4147 59 AASFLGIAGLIFISGYD-GLI-YSIGWTGGYPILLFLIAEYLRKLG------KYTFADFIADRYKSNPARLLAAIGTIIV 130 (529)
T ss_pred hHhhhchhHhhhhcccc-hHH-HHHHHHHHHHHHHHHHHHHHHhcC------CcchHHHHHHHHhcchhhHHHHHHHHHH
Confidence 34555666555555542 221 222332221 22344566655554 4688887654 44456777766655554
Q ss_pred HHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHHHHHHHHHhcCc--ccccc-
Q 044157 183 HYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTALVFVASGD--LQWNA- 259 (481)
Q Consensus 183 ~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~l~iii~~~~~~--~~~~~- 259 (481)
.+.-+++-..+.|..++.++++|.++...+-.++......+|.+|...+.|-+=.+.++...++..+....+ .++..
T Consensus 131 s~~YliaQmvGaG~li~~l~gv~~~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~ 210 (529)
T COG4147 131 SFLYLIAQMVGAGLLISLLLGVPYHVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPL 210 (529)
T ss_pred HHHHHHHHHHhhHHHHHHHhCCCceeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchH
Confidence 444456666788889998999988776655545555556677668888887766555555443333221111 01000
Q ss_pred ---------------cccccc--cchhhhhhHHh-hhccCcchHHHhH-Hhh-ccChhhHHHHHHHHHHHHHHHHHH
Q 044157 260 ---------------LLKANF--EAVPMSIPIIA-LSFVYQNVVPVLC-TNL-EGNLSKVRTAIVVGTSIPLGLFLV 316 (481)
Q Consensus 260 ---------------l~~~~~--~~i~~ai~vi~-~af~~~~~v~~i~-~~~-~~~~k~~~kai~~g~~i~~v~Yll 316 (481)
..+.+. +.-...+...+ .-+ +..-+|.+. +.. -.|.|+.||++.+++.+...+|+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~-GTAgLPHil~RFfTvp~~k~AR~Sv~wA~~fIg~fYi~ 286 (529)
T COG4147 211 FAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMV-GTAGLPHILMRFFTVPDAKEARKSVFWATGFIGIFYIL 286 (529)
T ss_pred HHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHH-ccCCCCeEEEEEEecCcHHHHHHHHHHHHHHHHHHHHH
Confidence 000010 11122222222 222 333345543 111 136799999999999999999987
No 87
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=97.74 E-value=0.063 Score=53.97 Aligned_cols=229 Identities=17% Similarity=0.205 Sum_probs=135.3
Q ss_pred chhhhccCCCcHHHHHHHHHHHHHhHHHh-HHHHHHHhhchHHHHHHHH---HHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 044157 81 NQATLKRESGSLSSAIFLVAGTTVGAGIL-AIPAVTQEAGFLASAVAVI---LCWIFMVVTGLLIAEVNVNTMCELGSGG 156 (481)
Q Consensus 81 ~~~~~~~~~~s~~~a~~~iigt~IGaGIL-~LP~~~a~~G~~~~~i~li---l~~~~~~~t~~~l~el~~~~~~~~g~~~ 156 (481)
||.=...|+.+..-..+....|-+++.-+ +-|.+.-+.|..+..+..+ ..|+.-..-+.-+...+.++. .
T Consensus 32 neYylgnRsmgg~VlAmt~~aTYisaSSFigGpgaayk~GlgwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~n------A 105 (473)
T COG4145 32 NEYYLGNRSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLALGVLGKKFAILAREYN------A 105 (473)
T ss_pred HHHHhccCcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhC------C
Confidence 44445578888888889999999999755 8999988888654322211 222222222333344444432 5
Q ss_pred CCHHHHHHH-HhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhh---HHHhH
Q 044157 157 VSLVSMAMR-TIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQR---FIGAA 232 (481)
Q Consensus 157 ~s~~~~a~~-~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k---~~~~~ 232 (481)
-+..|+-++ +=++...++.++...+...+.+++-.++.+..++..+|+|...+.++|.....+...+|.-| .-|.+
T Consensus 106 ltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gidY~tgL~ifa~~V~iYt~fGGFRAvvltD~I 185 (473)
T COG4145 106 LTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGIDYTTGLLIFAVSVAIYTAFGGFRAVVLTDTI 185 (473)
T ss_pred eeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchhhHHHHHHHHHHHHhhcceeeeehHHHH
Confidence 578887764 45777788888888888888888888899999999999998888888877777666666323 34555
Q ss_pred HHHHHH-HHHHHHHHHHHHh---------cCcccccccccccccc----hhhhhhHHhhhccCcchHHHhH-Hhh-ccCh
Q 044157 233 NGALVV-GIIISFTALVFVA---------SGDLQWNALLKANFEA----VPMSIPIIALSFVYQNVVPVLC-TNL-EGNL 296 (481)
Q Consensus 233 ~~i~~~-~~i~~l~iii~~~---------~~~~~~~~l~~~~~~~----i~~ai~vi~~af~~~~~v~~i~-~~~-~~~~ 296 (481)
|.+.+. +.++.+..++..+ ..+.|++-+.|.+... -+.+.--+..+++--+ .|... +-+ -||.
T Consensus 186 QG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlg-lP~t~vr~ia~kDs 264 (473)
T COG4145 186 QGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTIDPGLVTPQGADDILDPPFMASFWILVCFGVLG-LPHTAVRCIAFKDS 264 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCCccccCCCCCcccccchHHHHHHHHHHHHHhc-CcHHHHHHHhccch
Confidence 554332 3333333333221 1234444444432221 1111112233333222 23332 222 2578
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 044157 297 SKVRTAIVVGTSIPLGLFLV 316 (481)
Q Consensus 297 k~~~kai~~g~~i~~v~Yll 316 (481)
|-+.+.+.+|+.+...+-+.
T Consensus 265 kaih~gmiigt~vi~il~~g 284 (473)
T COG4145 265 KAIHRGMIIGTIVIAILMLG 284 (473)
T ss_pred hHHhcCcchHHHHHHHHHHH
Confidence 88889999988776655443
No 88
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=97.73 E-value=0.0023 Score=68.26 Aligned_cols=212 Identities=14% Similarity=0.199 Sum_probs=118.7
Q ss_pred HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChhhhHHHHHHHHHHHHHHHHH
Q 044157 110 AIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVA 189 (481)
Q Consensus 110 ~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~a 189 (481)
-.++...++|..-.+..++++..+..+|.+-+...+.+-.- ++++-|-|..+.+|+-.|--++..+++-....|..
T Consensus 89 R~gfIvG~aGll~Tll~lliaY~I~llTvlSicAIsTNGaV----~GGGaYymISRsLGpEfGGSIGllFf~anV~~~am 164 (945)
T KOG1288|consen 89 RFGFIVGQAGLLKTLLMLLIAYAILLLTVLSICAISTNGAV----RGGGAYYMISRSLGPEFGGSIGLLFFVANVFNCAM 164 (945)
T ss_pred HHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCce----ecCceEEEEEcccCcccCCeeeehhhHHHHhcchh
Confidence 45677889998888888888887777777766655554321 23445556677777754444455555555555667
Q ss_pred HHHHhHhHhhhhhc-----------Cch--HHH---HHHHHHHHHHHHhhChhhHHHhHHHHHHHHHHHHHHHHHHHh-c
Q 044157 190 YVARSSDILTNFLG-----------IPL--WES---ATLFSLILGGLCYFGSQRFIGAANGALVVGIIISFTALVFVA-S 252 (481)
Q Consensus 190 y~~~~g~~l~~~~~-----------lp~--~~~---~i~~~li~~~i~~lg~~k~~~~~~~i~~~~~i~~l~iii~~~-~ 252 (481)
++.++-|-+-..|| +|. |+- ..+...++..+.++|+ ..++|.+.+.+....+.+..+.+.. +
T Consensus 165 ~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGs-alfAkas~i~f~~is~s~~si~iS~if 243 (945)
T KOG1288|consen 165 NISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGS-ALFAKASNILFVVISVSLFSIPISFIF 243 (945)
T ss_pred hhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhH-HHHHhhhhhhhhHHHHHHhhhhheeEE
Confidence 77777665554443 332 322 1222223344567888 6888888877665544443333211 1
Q ss_pred ---Cc----------------------ccc----cccccc---c-----ccchhhhhhHHhhhccCcchHHHhHHhhccC
Q 044157 253 ---GD----------------------LQW----NALLKA---N-----FEAVPMSIPIIALSFVYQNVVPVLCTNLEGN 295 (481)
Q Consensus 253 ---~~----------------------~~~----~~l~~~---~-----~~~i~~ai~vi~~af~~~~~v~~i~~~~~~~ 295 (481)
.+ .++ ||+.+. | ...+-..+++++-+-.+...=..+..|+++|
T Consensus 244 vgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F~g~tGimAGAnMSgELk~P 323 (945)
T KOG1288|consen 244 VGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFFPGTTGIMAGANMSGELKAP 323 (945)
T ss_pred eccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeeeccchhhhcCCCcCccccCc
Confidence 00 000 111110 0 0123344444332222221123346778778
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 044157 296 LSKVRTAIVVGTSIPLGLFLVWNAVILGSIS 326 (481)
Q Consensus 296 ~k~~~kai~~g~~i~~v~Yll~~~~v~G~~~ 326 (481)
.|.+||..+.+.+...++|++..+..-...|
T Consensus 324 SkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~ 354 (945)
T KOG1288|consen 324 SKSIPKGTLSAVAFTFFVYVLVIFLMGCTVP 354 (945)
T ss_pred cccCCccchHHHHHHHHHHHHHHHHhccCcc
Confidence 8999999999999999999874444333333
No 89
>PHA02764 hypothetical protein; Provisional
Probab=97.68 E-value=0.0031 Score=61.81 Aligned_cols=91 Identities=8% Similarity=-0.078 Sum_probs=67.1
Q ss_pred cCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHH
Q 044157 87 RESGSLSSAIFLVAGTTVGAGILAIPAVTQEA--GFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAM 164 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~--G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~ 164 (481)
.|+.|.+++.+.-++.+-+....+.|.-++.. |. ..+...+++++++...+++++|++.++|+ .++.+.+.+
T Consensus 11 VREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~-nlLLAWLLGGLlALPgAL~YAELGSAmPr-----AGGdYVYIS 84 (399)
T PHA02764 11 IKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNV-NLLFAILIGAVFEIPLLLMYYKLTTKFPL-----NGGDYAYIR 84 (399)
T ss_pred eeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHHHHhhCCC-----CCceEEEhH
Confidence 56789999998666654433333556533322 32 24566788888999999999999999995 345777889
Q ss_pred HHhChhhhHHHHHHHHHHH
Q 044157 165 RTIGTVGVQIASWSYIFIH 183 (481)
Q Consensus 165 ~~~G~~~~~~~~~~~~~~~ 183 (481)
+++|++.+++.+|..++..
T Consensus 85 RAFGP~~GFLvG~a~WLtl 103 (399)
T PHA02764 85 TAFSSKFYTIFGISLWLTY 103 (399)
T ss_pred HhhCccHHHHHHHHHHHHH
Confidence 9999999999999876553
No 90
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.28 E-value=0.28 Score=50.29 Aligned_cols=318 Identities=17% Similarity=0.224 Sum_probs=150.1
Q ss_pred cHHHHHHHHHHHHHhHHHhHHHHHHH---hhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHh
Q 044157 91 SLSSAIFLVAGTTVGAGILAIPAVTQ---EAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTI 167 (481)
Q Consensus 91 s~~~a~~~iigt~IGaGIL~LP~~~a---~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~ 167 (481)
..+..-+++++--.|||=+-.|-... ...++++...+++.+...= .+.-...... ++++++++++.
T Consensus 6 ~~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglP----lLgiIa~a~~------g~~~~~l~~~i- 74 (431)
T COG1114 6 DIIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLP----LLGIIAVALY------GGGVESLATRI- 74 (431)
T ss_pred hHHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHH----HHHHHHhhcc------CCCHHHHhhhc-
Confidence 56677788899999999887776553 2345566555555544221 1122222221 33799998776
Q ss_pred ChhhhHHHH-HHHHHHH--HH----HHHHHHHHhHhHhhhhhcCc-hHHHHHHHHHHHHHHHhhChhhHHHhHHHHHHHH
Q 044157 168 GTVGVQIAS-WSYIFIH--YT----LLVAYVARSSDILTNFLGIP-LWESATLFSLILGGLCYFGSQRFIGAANGALVVG 239 (481)
Q Consensus 168 G~~~~~~~~-~~~~~~~--~~----~~~ay~~~~g~~l~~~~~lp-~~~~~i~~~li~~~i~~lg~~k~~~~~~~i~~~~ 239 (481)
|||.+.+.. ++|...- ++ ..++|..+..-...+- +.+ ..+-.++|..+.-.+.+.++ |.++++-.++++.
T Consensus 75 ~~~fg~~f~~~iyLsIGPffAiPRt~~vsfe~~i~p~~~~~-~~~~l~ifs~ifF~ia~~~sl~ps-klid~vGk~LTPi 152 (431)
T COG1114 75 GPWFGVLFAIAIYLSIGPFFAIPRTGAVSFEVGISPLLGDS-SLPSLFIFSVIFFAIAYLFSLNPS-KLIDRVGKFLTPI 152 (431)
T ss_pred cchHHHHHHHHHHHHhcccccCCcccchhHHHhhhcccCCC-cchHHHHHHHHHHHHHHHHHcCHH-HHHHHHHHHHhHH
Confidence 565554443 3332211 10 2344444332222211 111 11222333233333444456 8999999999999
Q ss_pred HHHHHHHHHHHhc--Cccccc----ccccccc-cchh---hhh-hHHhhhccCcchHHHhHHhhccChhhHHHHHH----
Q 044157 240 IIISFTALVFVAS--GDLQWN----ALLKANF-EAVP---MSI-PIIALSFVYQNVVPVLCTNLEGNLSKVRTAIV---- 304 (481)
Q Consensus 240 ~i~~l~iii~~~~--~~~~~~----~l~~~~~-~~i~---~ai-~vi~~af~~~~~v~~i~~~~~~~~k~~~kai~---- 304 (481)
+++.+.++++..+ ++-..+ ...+..+ +++. ..+ ....++|+. .++..+.....+++|+..|...
T Consensus 153 lLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~Fgi-vIv~alk~~g~~~~~~~~~~~~~agl 231 (431)
T COG1114 153 LLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGI-VIVNALKSKGVTTKKQIIKYTIKAGL 231 (431)
T ss_pred HHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHH-HHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 9887777665533 221111 1111111 1111 111 111233322 1222222222223444444333
Q ss_pred HHHHHHHHHHHHHHHHHHhcccccccc-CCCcchhHHHhhh--cCCcHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Q 044157 305 VGTSIPLGLFLVWNAVILGSISGLEMS-SGQIVDPIQQLRS--SNGAVGPIIDVFSFLAIATSYIGFILGLSDFLADLLK 381 (481)
Q Consensus 305 ~g~~i~~v~Yll~~~~v~G~~~~~~~~-~~~~~~~l~~l~~--~~~~~~~iv~~~~~~ai~ts~~~~~l~l~~~l~~~~~ 381 (481)
++...-..+|.. ...+|..+.+... .+|-.+.+.+..+ .++....+.......|.+|+..|..-+..|++.+.++
T Consensus 232 Ia~i~La~iY~~--L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p 309 (431)
T COG1114 232 IAAILLALIYLS--LFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVP 309 (431)
T ss_pred HHHHHHHHHHHH--HHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222223334432 4444433332211 1222455544333 2344455666777788888888888787777777665
Q ss_pred CCCCCCCcchhhHh-hHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 044157 382 LPSGQSSPQPYLLT-LIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSW 435 (481)
Q Consensus 382 ~~~~~~r~~~~~l~-~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~ 435 (481)
+- ..+.|+.. .++..+++... ++.++.+ ...++..+.|....+
T Consensus 310 ~~----SY~~~v~if~i~sflvan~G---L~~Ii~i----svPvL~~iYPiaI~L 353 (431)
T COG1114 310 KL----SYKTWVIIFTLISFLVANLG---LEQIIKI----SVPVLTAIYPIAIAL 353 (431)
T ss_pred cc----cHHHHHHHHHHHHHHHHHhh---HHHHHHH----HHHHHHHHhHHHHHH
Confidence 21 12223322 23445555543 4444432 334567777766544
No 91
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=97.11 E-value=0.0061 Score=56.05 Aligned_cols=104 Identities=22% Similarity=0.269 Sum_probs=77.2
Q ss_pred HHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------c--cc----------
Q 044157 96 IFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTM-----------C--EL---------- 152 (481)
Q Consensus 96 ~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~-----------~--~~---------- 152 (481)
...+++-++|+|-|++|.+++.+||..++.++...+.+++.++-.+.|...... + +.
T Consensus 18 llymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd~d 97 (319)
T KOG3832|consen 18 LLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASDDD 97 (319)
T ss_pred HhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCCCc
Confidence 445788899999999999999999999998888888888777776666543210 0 00
Q ss_pred ---------------------CC-------CCCCHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhh
Q 044157 153 ---------------------GS-------GGVSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILT 199 (481)
Q Consensus 153 ---------------------g~-------~~~s~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~ 199 (481)
|+ +.....+++...|.+.+-.+..++.++++||-+..|....--...
T Consensus 98 vli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m 172 (319)
T KOG3832|consen 98 VLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAM 172 (319)
T ss_pred EEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhh
Confidence 00 123467888899999998888888889999988888765443333
No 92
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=96.91 E-value=0.16 Score=55.25 Aligned_cols=155 Identities=17% Similarity=0.300 Sum_probs=100.1
Q ss_pred CcHHHHHHHHHHHHHhHHHh-HHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhC
Q 044157 90 GSLSSAIFLVAGTTVGAGIL-AIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIG 168 (481)
Q Consensus 90 ~s~~~a~~~iigt~IGaGIL-~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G 168 (481)
+++.+...=.+-.+.|.=.+ -|-+....+|...+..++++|.+.++.|+.-+...+.+---+ .+++|+ +..+.+|
T Consensus 115 Gt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVp---aGGsYf-mISRsLG 190 (1075)
T KOG2082|consen 115 GTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVP---AGGSYF-MISRSLG 190 (1075)
T ss_pred ceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc---CCCeeE-EEecccC
Confidence 34444434344444444333 467777888888899999999999999988887666653211 234555 4567788
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhh-hh------cC------------chHHHHHHHHHHHHHHHhhChhhHH
Q 044157 169 TVGVQIASWSYIFIHYTLLVAYVARSSDILTN-FL------GI------------PLWESATLFSLILGGLCYFGSQRFI 229 (481)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~-~~------~l------------p~~~~~i~~~li~~~i~~lg~~k~~ 229 (481)
+-.|-.+++++++-.-.+.+.|+.+.-|++-. .+ +- +..+...++.++.+.+++.|+ |.+
T Consensus 191 PEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GV-K~V 269 (1075)
T KOG2082|consen 191 PEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGV-KFV 269 (1075)
T ss_pred ccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHH-HHH
Confidence 87777778877776655667788777775433 33 10 112334555566667778888 899
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 044157 230 GAANGALVVGIIISFTALVF 249 (481)
Q Consensus 230 ~~~~~i~~~~~i~~l~iii~ 249 (481)
.++..++....++.++.+..
T Consensus 270 nk~A~vfL~CVILSIlaiya 289 (1075)
T KOG2082|consen 270 NKFAPVFLACVILSILAIYA 289 (1075)
T ss_pred HHhhHHHHHHHHHHHHHHHH
Confidence 99888877776666555544
No 93
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=96.81 E-value=0.94 Score=48.24 Aligned_cols=158 Identities=18% Similarity=0.110 Sum_probs=73.6
Q ss_pred cCCCcHHHHHHHHHHHHHhHHHhHHH----HH-HHh------hch----HHHHHHHHH-----HHHHHHHHHHHHHHHhh
Q 044157 87 RESGSLSSAIFLVAGTTVGAGILAIP----AV-TQE------AGF----LASAVAVIL-----CWIFMVVTGLLIAEVNV 146 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaGIL~LP----~~-~a~------~G~----~~~~i~lil-----~~~~~~~t~~~l~el~~ 146 (481)
+++-|.++..++++.+-+|+|++-.. .. ..+ .+- ..+...... .|.+....++.++-...
T Consensus 72 kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~y 151 (485)
T PF02028_consen 72 KPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFFY 151 (485)
T ss_dssp --SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheeee
Confidence 44579999999999999999998542 11 111 110 112222222 33333444445555555
Q ss_pred hhhcccCCCCCCHHHHHHHHhChhhhHHHHHHHHHHHH-HHHHHHH---HHhHhHhhhhhcCchH----HH-HHHHHHHH
Q 044157 147 NTMCELGSGGVSLVSMAMRTIGTVGVQIASWSYIFIHY-TLLVAYV---ARSSDILTNFLGIPLW----ES-ATLFSLIL 217 (481)
Q Consensus 147 ~~~~~~g~~~~s~~~~a~~~~G~~~~~~~~~~~~~~~~-~~~~ay~---~~~g~~l~~~~~lp~~----~~-~i~~~li~ 217 (481)
+..++..-...=+.-++++.-|+. +.+++....+... +...+.- ...++-+++++|+|.. .. ..++++++
T Consensus 152 ~k~~~~~~ss~l~pl~g~~~~g~~-g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~~~~ii~~~~~i~ 230 (485)
T PF02028_consen 152 NKGKPLRISSALYPLLGDRINGPL-GKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGLQIIIIIVITVIF 230 (485)
T ss_dssp TS---SSGGGGCHHHHHHHHHSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHHHHHHHHHHHHHH
T ss_pred ecCCCCchhhhhhhhcCCcccCcc-hhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence 422211000111333444444444 4555554444332 2222221 2334456666777642 11 22333444
Q ss_pred HHHHhhChhhHHHhHHHHHHHHHHHHHH
Q 044157 218 GGLCYFGSQRFIGAANGALVVGIIISFT 245 (481)
Q Consensus 218 ~~i~~lg~~k~~~~~~~i~~~~~i~~l~ 245 (481)
+.-...|..|.+++++++-+...+..++
T Consensus 231 ~~S~~~Gl~kGIk~LS~~n~~l~~~ll~ 258 (485)
T PF02028_consen 231 TISAVSGLDKGIKRLSNINVYLAFALLL 258 (485)
T ss_dssp HHHHHTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677767777777766555444333
No 94
>PRK09928 choline transport protein BetT; Provisional
Probab=96.55 E-value=1.6 Score=48.12 Aligned_cols=149 Identities=12% Similarity=0.080 Sum_probs=74.8
Q ss_pred cCCCcHHHHHHHHHHHHHhHHHhHH----HHH-H-H----hhchH----HHHHHHHHHH-----HHHHHHHHHHHHHhhh
Q 044157 87 RESGSLSSAIFLVAGTTVGAGILAI----PAV-T-Q----EAGFL----ASAVAVILCW-----IFMVVTGLLIAEVNVN 147 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaGIL~L----P~~-~-a----~~G~~----~~~i~lil~~-----~~~~~t~~~l~el~~~ 147 (481)
+++-|.++..++++.+-+|+|++.. |.. + . +.|-. .+.....+=| .+....++.++-.+.+
T Consensus 90 kPefS~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr 169 (679)
T PRK09928 90 KPEFSLLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYR 169 (679)
T ss_pred CCCCCcchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Confidence 4557888999999999999998832 221 1 1 11110 1222233333 3333444444444444
Q ss_pred hhcccCCCCCCHHHHHHHHhChh----hhHHHHHHHHH-HHHHHHHHHHH---HhHhHhhhhhcCch----HHH-HHHHH
Q 044157 148 TMCELGSGGVSLVSMAMRTIGTV----GVQIASWSYIF-IHYTLLVAYVA---RSSDILTNFLGIPL----WES-ATLFS 214 (481)
Q Consensus 148 ~~~~~g~~~~s~~~~a~~~~G~~----~~~~~~~~~~~-~~~~~~~ay~~---~~g~~l~~~~~lp~----~~~-~i~~~ 214 (481)
... .-+..+..+-.+|++ .+.++++...+ ..+|...+.-. ..++-++.++|+|. +.. .++.+
T Consensus 170 ~~~-----pl~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lfGi~~~~~~q~~ii~vi~ 244 (679)
T PRK09928 170 YNL-----PLTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLFDIPESLAAQAALIALSV 244 (679)
T ss_pred CCC-----CCchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHH
Confidence 432 235666666666642 34455554433 33443333222 23344666777654 221 12233
Q ss_pred HHHHHHHhhChhhHHHhHHHHHHHHH
Q 044157 215 LILGGLCYFGSQRFIGAANGALVVGI 240 (481)
Q Consensus 215 li~~~i~~lg~~k~~~~~~~i~~~~~ 240 (481)
++++.-...|..|.+++++.+-....
T Consensus 245 ~i~~~S~~sGl~KGIk~LS~lN~~La 270 (679)
T PRK09928 245 IIATISVTSGVNKGIRVLSELNVLLA 270 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445676677777776655443
No 95
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.28 E-value=0.17 Score=53.51 Aligned_cols=98 Identities=14% Similarity=0.128 Sum_probs=63.0
Q ss_pred CCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHh
Q 044157 88 ESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTI 167 (481)
Q Consensus 88 ~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~ 167 (481)
-|.+.+-..-+=+.++-|+|=+.-|...++.||.++.+=++++..+.-- ..=+.-+....+ +++.|..|++++..
T Consensus 50 VPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGa-VhD~~~L~~SvR----~~G~Si~~ia~~~l 124 (575)
T COG1966 50 VPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGA-VHDYFSLMLSVR----HGGKSIGEIAGKYL 124 (575)
T ss_pred ccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhh-hhhhhheeeeec----cCCccHHHHHHHHh
Confidence 3344455566667788899999999999999999886544444333211 111111122222 23789999999999
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHH
Q 044157 168 GTVGVQIASWSYIFIHYTLLVAY 190 (481)
Q Consensus 168 G~~~~~~~~~~~~~~~~~~~~ay 190 (481)
|+..+.+..+..++......+++
T Consensus 125 G~~a~~~~~~~~l~iliiv~Avf 147 (575)
T COG1966 125 GRTAKVFFLLLALILLILVGAVF 147 (575)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999888776655444444443
No 96
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=96.01 E-value=0.64 Score=47.20 Aligned_cols=108 Identities=12% Similarity=0.142 Sum_probs=71.8
Q ss_pred hccCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHH
Q 044157 85 LKRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAM 164 (481)
Q Consensus 85 ~~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~ 164 (481)
+++-+.+-|-..-+=..++-|+|=..-|...+..||.|+.+=++++.++.--.. =+..+....+ +++.|..|+++
T Consensus 47 vDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVH-D~~sl~~SvR----~~G~Si~~i~~ 121 (376)
T PF02554_consen 47 VDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVH-DYGSLMASVR----HKGKSIGEIAG 121 (376)
T ss_pred CCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHH-HHHHHhhhhc----CCCccHHHHHH
Confidence 344455666777778888999999999998899999988655444444321111 1122222222 13779999999
Q ss_pred HHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhH
Q 044157 165 RTIGTVGVQIASWSYIFIHYTLLVAYVARSSDI 197 (481)
Q Consensus 165 ~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~ 197 (481)
+..||.++.+..+..++.+....+++....++.
T Consensus 122 ~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~ 154 (376)
T PF02554_consen 122 KYLGKRAKKLFLIFIFFLLILVIAVFADVVANT 154 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888777766655555555444443
No 97
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=95.28 E-value=0.43 Score=49.20 Aligned_cols=69 Identities=13% Similarity=0.155 Sum_probs=56.0
Q ss_pred CCHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-CchHHHHHHHHHHHHHHHhhCh
Q 044157 157 VSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-IPLWESATLFSLILGGLCYFGS 225 (481)
Q Consensus 157 ~s~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-lp~~~~~i~~~li~~~i~~lg~ 225 (481)
.-..+++++.||+.|+.+.++...+.|.+.+++.+...+|+++++++ +|...+.+.+++....+...|.
T Consensus 255 ~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k~~y~~~v~~~~l~s~~ia~~Gl 324 (378)
T TIGR00796 255 QILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPKLSYKTWVIVFTLFSFIVANLGL 324 (378)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCH
Confidence 34678999999999999999999999999999999999999999864 7776666666555555555565
No 98
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=95.21 E-value=0.49 Score=49.43 Aligned_cols=68 Identities=12% Similarity=0.187 Sum_probs=57.7
Q ss_pred CHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-CchHHHHHHHHHHHHHHHhhCh
Q 044157 158 SLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-IPLWESATLFSLILGGLCYFGS 225 (481)
Q Consensus 158 s~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-lp~~~~~i~~~li~~~i~~lg~ 225 (481)
=..+++++.+|+.|..+.++++.+-|...+++.....+|++++.++ ++...+.++++++...+..+|.
T Consensus 262 lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~kisY~~~v~i~~i~S~~ian~Gl 330 (427)
T PF05525_consen 262 LLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKISYKVWVIIFTIFSFIIANLGL 330 (427)
T ss_pred HHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHhCH
Confidence 4677889999999999999999999999999999999999999987 7777777777666666666776
No 99
>PRK15015 carbon starvation protein A; Provisional
Probab=94.43 E-value=1.3 Score=48.07 Aligned_cols=93 Identities=18% Similarity=0.173 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChhhhH
Q 044157 94 SAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQ 173 (481)
Q Consensus 94 ~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~~~~ 173 (481)
-..-+=+.++-|+|=+.-|...++.||.|+.+=++++.++.- ...=+.-+....+ ++++|..+++++..|+.++.
T Consensus 87 VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~G-aVhD~~~L~~S~R----~~GrSig~ia~~~iG~~~~~ 161 (701)
T PRK15015 87 VLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAG-AVQDFMVLFVSTR----RDGRSLGELVKEEMGPTAGV 161 (701)
T ss_pred chhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeec-hhhhhhheeeeec----CCCccHHHHHHHHhhHHHHH
Confidence 344566778889999999999999999998754444443321 1111111222222 23779999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 044157 174 IASWSYIFIHYTLLVAYV 191 (481)
Q Consensus 174 ~~~~~~~~~~~~~~~ay~ 191 (481)
+..+..++.+.....++.
T Consensus 162 lfli~i~~iliiviAvfa 179 (701)
T PRK15015 162 IALVACFMIMVIILAVLA 179 (701)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 877665555444444443
No 100
>PRK09950 putative transporter; Provisional
Probab=94.11 E-value=9.8 Score=40.78 Aligned_cols=153 Identities=16% Similarity=0.130 Sum_probs=79.3
Q ss_pred cCCCcHHHHHHHHHHHHHhHHHhHH----HHH-HHh--hc----h----HHHHHHHHHHHHHHHHHHHHHHHHhhhh---
Q 044157 87 RESGSLSSAIFLVAGTTVGAGILAI----PAV-TQE--AG----F----LASAVAVILCWIFMVVTGLLIAEVNVNT--- 148 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaGIL~L----P~~-~a~--~G----~----~~~~i~lil~~~~~~~t~~~l~el~~~~--- 148 (481)
+++-|.++...+++.+-+|+|++.- |.. +.+ .| - -.+...-..=|.+.-++.+.+.-+...+
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~ 160 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLYWGVMEWAYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFH 160 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHHHhhHhHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 5668899999999999999999843 221 110 11 1 1122223333433333333333332222
Q ss_pred -hcccCCCCCCHHHHHHHHhChh----hhHHHHHHHHHHH-HHHHHHHH---HHhHhHhhhhhcCch----HHH-HHHHH
Q 044157 149 -MCELGSGGVSLVSMAMRTIGTV----GVQIASWSYIFIH-YTLLVAYV---ARSSDILTNFLGIPL----WES-ATLFS 214 (481)
Q Consensus 149 -~~~~g~~~~s~~~~a~~~~G~~----~~~~~~~~~~~~~-~~~~~ay~---~~~g~~l~~~~~lp~----~~~-~i~~~ 214 (481)
+++ +..+..+..+-.+|++ .+.++++...+.. .|...+.- ...++-+++++|+|. +.. ..+.+
T Consensus 161 ~rk~---~pl~iss~~~pllG~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~vi~ 237 (506)
T PRK09950 161 VRKN---KGLSLSGIIAAITGVKPQGPWGRLVDLMFLIATVGALTISLVVTAATFTRGLSALTGLPNNFTVQAFVILLSG 237 (506)
T ss_pred hhcC---CCCchHHhhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 211 2346777778888753 4566666554433 33322222 123444566677654 221 22333
Q ss_pred HHHHHHHhhChhhHHHhHHHHHHHHHHH
Q 044157 215 LILGGLCYFGSQRFIGAANGALVVGIII 242 (481)
Q Consensus 215 li~~~i~~lg~~k~~~~~~~i~~~~~i~ 242 (481)
++++.-.+.|..|.+++++++-+...+.
T Consensus 238 ~if~~S~~~Gl~kGIk~LS~~N~~la~~ 265 (506)
T PRK09950 238 VIFCLSSYIGIDNGLQRLSKMVGWGAFL 265 (506)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4444445567667788887766554443
No 101
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=93.81 E-value=11 Score=40.34 Aligned_cols=152 Identities=13% Similarity=0.068 Sum_probs=78.2
Q ss_pred cCCCcHHHHHHHHHHHHHhHHHhHH----HHHHH-h--hch----H----HHHHHHHHHHHHH-----HHHHHHHHHHhh
Q 044157 87 RESGSLSSAIFLVAGTTVGAGILAI----PAVTQ-E--AGF----L----ASAVAVILCWIFM-----VVTGLLIAEVNV 146 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaGIL~L----P~~~a-~--~G~----~----~~~i~lil~~~~~-----~~t~~~l~el~~ 146 (481)
+++-+.++...+++.+-+|+|++.. |..-- + .|. . .+...-.+=|.+. ...++.++-...
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~y 162 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYFFF 162 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhhhhhhhHHHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence 5568899999999999999999843 32110 0 121 1 1222223333333 333333444443
Q ss_pred hhhcccCCCCCCHHHHHHHHhCh-----hhhHHHHHHHHHHH-HHHHHHHH---HHhHhHhhhhhcCch----HHH-HHH
Q 044157 147 NTMCELGSGGVSLVSMAMRTIGT-----VGVQIASWSYIFIH-YTLLVAYV---ARSSDILTNFLGIPL----WES-ATL 212 (481)
Q Consensus 147 ~~~~~~g~~~~s~~~~a~~~~G~-----~~~~~~~~~~~~~~-~~~~~ay~---~~~g~~l~~~~~lp~----~~~-~i~ 212 (481)
+.++ +.-+..+..+-.+|+ +.+.++++...+.. .|...+.- ...++-+++++|+|. +.. ..+
T Consensus 163 ~~~~----p~l~iss~~~pllG~~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~Gi~~~~~~~~~ii~~ 238 (504)
T PRK03356 163 VRKM----DVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITC 238 (504)
T ss_pred hcCC----CcccHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCchHHHHHHHHH
Confidence 3321 122577777888883 24566666554433 33322221 123444666777654 222 223
Q ss_pred HHHHHHHHHhhChhhHHHhHHHHHHHHHHH
Q 044157 213 FSLILGGLCYFGSQRFIGAANGALVVGIII 242 (481)
Q Consensus 213 ~~li~~~i~~lg~~k~~~~~~~i~~~~~i~ 242 (481)
++++++.-.+.|..|.+++++++-+...++
T Consensus 239 i~~if~~S~~~Gl~kGIk~LS~~N~~la~~ 268 (504)
T PRK03356 239 WIILNAICVACGLQKGVRIASDVRSYLSFL 268 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455567667777777765554433
No 102
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=93.61 E-value=2.4 Score=43.68 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=62.8
Q ss_pred CCHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhc-CchHHHHHHHHHHHHHHHhhChhhHHHhHHHH
Q 044157 157 VSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLG-IPLWESATLFSLILGGLCYFGSQRFIGAANGA 235 (481)
Q Consensus 157 ~s~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~-lp~~~~~i~~~li~~~i~~lg~~k~~~~~~~i 235 (481)
.=..++.++.||+.|..+.+.+..+-|...+++.+...+|++++.++ ++...+..+++++...+..+|. +++-.+
T Consensus 263 ~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p~~SY~~~v~if~i~sflvan~GL----~~Ii~i 338 (431)
T COG1114 263 QILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVPKLSYKTWVIIFTLISFLVANLGL----EQIIKI 338 (431)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhH----HHHHHH
Confidence 34678889999999999999999999999999999999999999986 7777777777766655555655 444444
Q ss_pred HHHHH
Q 044157 236 LVVGI 240 (481)
Q Consensus 236 ~~~~~ 240 (481)
.++.+
T Consensus 339 svPvL 343 (431)
T COG1114 339 SVPVL 343 (431)
T ss_pred HHHHH
Confidence 55543
No 103
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=93.32 E-value=0.72 Score=49.73 Aligned_cols=143 Identities=13% Similarity=0.131 Sum_probs=73.6
Q ss_pred cCCCcHHHHHHHHHHHHHhHH-HhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHH
Q 044157 87 RESGSLSSAIFLVAGTTVGAG-ILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMR 165 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaG-IL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~ 165 (481)
.|+..++-..+-++.+-+|++ ++++|....+.|.-.... .| ........+.... .|--..-+..+.+||-++
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~----~~-~~l~~~~~~~~~f--~Pvf~~~~v~~~~eYl~~ 116 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFF----EW-NALLSVLLLGWIF--IPVFYRLGVTTMYEYLEK 116 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHH----HH-HHHHHHHhhheEE--EEEEEecCeeehhHHHHH
Confidence 666777777777788888887 568999888888542211 11 1111111111111 111000125578999999
Q ss_pred HhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhChhhH---HHhHHHHH
Q 044157 166 TIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGSQRF---IGAANGAL 236 (481)
Q Consensus 166 ~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~~k~---~~~~~~i~ 236 (481)
-||+..+.+..+.+.+..+.-+..+...-+-.+++..|++.+.......++++.....|..|. .|-+|.+.
T Consensus 117 Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~~i 190 (585)
T KOG2349|consen 117 RFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGINLYLIVVILGLICVFYTALGGLKAVIWTDVVQTVI 190 (585)
T ss_pred HhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhccCceeehHHHHHHHHHHHHhcCeeEEEEhhHHHHHH
Confidence 999987777766665544332222222222234455555544333334444444444554343 34555444
No 104
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=93.18 E-value=4.3 Score=42.38 Aligned_cols=79 Identities=13% Similarity=0.074 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHH
Q 044157 133 FMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATL 212 (481)
Q Consensus 133 ~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~ 212 (481)
.+.+.++++-.++.|..--. +....|..++.+.||.++..++.-=+-..+.-..-+++.+--+.-++++|.|.+.++
T Consensus 68 ~a~~~alllQ~LaARLGvVT---G~hLAe~Cr~~Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~IPL~~GVli 144 (503)
T KOG1291|consen 68 LANFMALLLQRLAARLGVVT---GKHLAEICREEYPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSNIPLWAGVLI 144 (503)
T ss_pred HHHHHHHHHHHHHHHHcccc---cHHHHHHHHHHccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 34556666667777765322 346888999999999988776644333334444455555445555567898887655
Q ss_pred HH
Q 044157 213 FS 214 (481)
Q Consensus 213 ~~ 214 (481)
-+
T Consensus 145 Ti 146 (503)
T KOG1291|consen 145 TI 146 (503)
T ss_pred HH
Confidence 43
No 105
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=92.88 E-value=3.6 Score=43.11 Aligned_cols=67 Identities=9% Similarity=0.099 Sum_probs=55.1
Q ss_pred HHHHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHhHhHhhhhhcCchHHHHHHHHHHHHHHHhhCh
Q 044157 159 LVSMAMRTIGTVGVQIASWSYIFIHYTLLVAYVARSSDILTNFLGIPLWESATLFSLILGGLCYFGS 225 (481)
Q Consensus 159 ~~~~a~~~~G~~~~~~~~~~~~~~~~~~~~ay~~~~g~~l~~~~~lp~~~~~i~~~li~~~i~~lg~ 225 (481)
...+.++.+|++++.+.++..++.|+..+++-..+.++++++.++++...+..++.++..++..+|.
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~isY~~~v~i~~l~S~~lSn~G~ 333 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLSYRTLVFILGGFSMVVSNLGL 333 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHhHH
Confidence 4567889999999999999999999999999999999999998777776666666555555555665
No 106
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=92.80 E-value=15 Score=38.87 Aligned_cols=154 Identities=10% Similarity=0.032 Sum_probs=75.9
Q ss_pred cCCCcHHHHHHHHHHHHHhHHHhHH----HHH-HHh--hch----H-----HHHHHHHHHHHHHHHHHHHHHHHhh---h
Q 044157 87 RESGSLSSAIFLVAGTTVGAGILAI----PAV-TQE--AGF----L-----ASAVAVILCWIFMVVTGLLIAEVNV---N 147 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaGIL~L----P~~-~a~--~G~----~-----~~~i~lil~~~~~~~t~~~l~el~~---~ 147 (481)
+++-|.++..++++.+-+|+|++.- |.. +.+ .|. . .+......=|.+.-++.+.+.-+.. .
T Consensus 34 kPefS~~sW~aMlf~aG~G~gllfwgvaEP~~h~~~Pp~g~~~~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~aY~~ 113 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMGIGLMFWGVAEPLTYYLTPPFGAGPTSTTQAQEQALAYTLFHWGIHAWAIYALVGLALAYFH 113 (453)
T ss_pred CCCCcchHHHHHHHHHhhhhhhhhhHhhhHHHHhCCCCCCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhh
Confidence 3557888999999999999999843 221 111 111 1 1222233333333333333333222 1
Q ss_pred hhcccCCCCCCHHHHHHHHhChh----hhHHHHHHHHHH-HHHHHHHHH---HHhHhHhhhhhcCchH----HH-HHHHH
Q 044157 148 TMCELGSGGVSLVSMAMRTIGTV----GVQIASWSYIFI-HYTLLVAYV---ARSSDILTNFLGIPLW----ES-ATLFS 214 (481)
Q Consensus 148 ~~~~~g~~~~s~~~~a~~~~G~~----~~~~~~~~~~~~-~~~~~~ay~---~~~g~~l~~~~~lp~~----~~-~i~~~ 214 (481)
++++ +..+..+..+-.+|++ .+.++++...+. .++...+.- ...++-+++++|+|.. .. ..+.+
T Consensus 114 ~rk~---~~~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~atsLGlg~~qi~~gl~~l~gi~~~~~~~~~ii~~i~ 190 (453)
T TIGR00842 114 VRKG---LPLRLSSALVPLLGERVNGPIGKAIDIMALVATLFGVATSLGLGAPQINAGLSALFGIPDSFWLQALIILCVT 190 (453)
T ss_pred eecC---CCCchhhhhhcccCCcccCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 2221 2345777777777753 345666554443 333322221 2233445666776642 11 12233
Q ss_pred HHHHHHHhhChhhHHHhHHHHHHHHHHHH
Q 044157 215 LILGGLCYFGSQRFIGAANGALVVGIIIS 243 (481)
Q Consensus 215 li~~~i~~lg~~k~~~~~~~i~~~~~i~~ 243 (481)
+++..-...|..|.+++++++-+...++.
T Consensus 191 ~~f~~S~~~Gl~kGIk~LS~~n~~l~~~l 219 (453)
T TIGR00842 191 ALACISVASGVGKGIKILSNINMALAFLL 219 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445676677777777665544443
No 107
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=90.62 E-value=27 Score=37.42 Aligned_cols=24 Identities=21% Similarity=0.223 Sum_probs=20.2
Q ss_pred cCCCcHHHHHHHHHHHHHhHHHhH
Q 044157 87 RESGSLSSAIFLVAGTTVGAGILA 110 (481)
Q Consensus 87 ~~~~s~~~a~~~iigt~IGaGIL~ 110 (481)
+++-+..+..++++.+-+|.|++-
T Consensus 85 ~PEfs~~SW~aMLFaAGmGigl~f 108 (537)
T COG1292 85 KPEFSTLSWLAMLFAAGMGIGLLF 108 (537)
T ss_pred CCCcchhHHHHHHHHcccCceeeE
Confidence 445788899999999999999874
No 108
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=85.35 E-value=58 Score=35.10 Aligned_cols=55 Identities=29% Similarity=0.315 Sum_probs=33.6
Q ss_pred cHHHHHHHHHHHHHhHH-HhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 044157 91 SLSSAIFLVAGTTVGAG-ILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNV 146 (481)
Q Consensus 91 s~~~a~~~iigt~IGaG-IL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~ 146 (481)
+-.+-+...+|.++|-| +.-.|+-..+.|...-++..+++-++ .---.++.|++.
T Consensus 6 ~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~-~giP~~~lE~~l 61 (523)
T PF00209_consen 6 SKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLL-VGIPLLYLELAL 61 (523)
T ss_dssp -HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHH-THHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc
Confidence 45677888999999999 66899987766543333333333222 223334566665
No 109
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=66.78 E-value=1.4e+02 Score=31.84 Aligned_cols=140 Identities=15% Similarity=0.192 Sum_probs=72.2
Q ss_pred ccCCCcHHHHHHHHHHHHHhHHHhHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHH
Q 044157 86 KRESGSLSSAIFLVAGTTVGAGILAIPAVTQEAG--FLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMA 163 (481)
Q Consensus 86 ~~~~~s~~~a~~~iigt~IGaGIL~LP~~~a~~G--~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a 163 (481)
.+|.=|+|+-...-.+..++.+..-...+.-+.| |+-+++.++++-.+. +..+ -+..+... .-..++.-..
T Consensus 52 ~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~vG~~~~---~~f~-~lns~~G~---~yhIsFpv~s 124 (572)
T KOG2466|consen 52 SRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWVGYLFT---AIFL-VLNSRPGS---DYHISFPVLS 124 (572)
T ss_pred ccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHHHHHHH---HHHH-HHccCCCc---ccccceeeee
Confidence 4677888888888887777777766555555555 444555555444332 2111 12222110 0123667777
Q ss_pred HHHhChhhhH---HHHHHHHHHHHHHHHHHHHHhHhH----hhhhh----cCc-----------hHHHHHHHHHHHHHHH
Q 044157 164 MRTIGTVGVQ---IASWSYIFIHYTLLVAYVARSSDI----LTNFL----GIP-----------LWESATLFSLILGGLC 221 (481)
Q Consensus 164 ~~~~G~~~~~---~~~~~~~~~~~~~~~ay~~~~g~~----l~~~~----~lp-----------~~~~~i~~~li~~~i~ 221 (481)
|..||-++.. +.-+.+....|+. -+|+ .|+- +.+.+ .+| .+++-.+|.++..++.
T Consensus 125 R~sFGiygS~~pIi~R~vma~vwYg~-~awi--GgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~~ 201 (572)
T KOG2466|consen 125 RSSFGIYGSLWPIINRVVMACVWYGV-NAWI--GGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPFY 201 (572)
T ss_pred eeehhhhHhHHHHHHHHHHHHhhhhh-hhhh--hhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhee
Confidence 8888876544 3333333334443 2232 1221 22222 122 2455677777777777
Q ss_pred hhChhhHHHhHHHHH
Q 044157 222 YFGSQRFIGAANGAL 236 (481)
Q Consensus 222 ~lg~~k~~~~~~~i~ 236 (481)
+++. ..+.++..+.
T Consensus 202 ~~~p-~~ir~lf~~k 215 (572)
T KOG2466|consen 202 WFPP-YKIRHLFTWK 215 (572)
T ss_pred eccH-HHhhhHHHHH
Confidence 7765 3455554433
No 110
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=44.68 E-value=25 Score=27.92 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHhHHHh
Q 044157 93 SSAIFLVAGTTVGAGIL 109 (481)
Q Consensus 93 ~~a~~~iigt~IGaGIL 109 (481)
-.+.++.+++.+|-|+.
T Consensus 62 ~s~lalli~~~~G~g~y 78 (84)
T PF09716_consen 62 ASGLALLIATALGYGYY 78 (84)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555566666666654
No 111
>TIGR00267 conserved hypothetical protein TIGR00267. This family is represented in three of the first four completed archaeal genomes, with two members in A. fulgidus.
Probab=44.57 E-value=1.9e+02 Score=26.11 Aligned_cols=28 Identities=14% Similarity=0.090 Sum_probs=20.5
Q ss_pred CcHHHHHHHHHHHHHhHHHhHHHHHHHh
Q 044157 90 GSLSSAIFLVAGTTVGAGILAIPAVTQE 117 (481)
Q Consensus 90 ~s~~~a~~~iigt~IGaGIL~LP~~~a~ 117 (481)
.-+..+....+...+|+=+--+|+.+.+
T Consensus 87 ~p~~aAl~sgls~~~g~liPllp~~~~~ 114 (169)
T TIGR00267 87 RVYMSGFIDGFSTFMGSFVPVLPFLVFD 114 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3456677788888888877788987643
No 112
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=43.68 E-value=95 Score=28.16 Aligned_cols=63 Identities=19% Similarity=0.304 Sum_probs=39.3
Q ss_pred HHHhHHHhHHHHHHH--hhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChhhhHHHHHHH
Q 044157 102 TTVGAGILAIPAVTQ--EAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIASWSY 179 (481)
Q Consensus 102 t~IGaGIL~LP~~~a--~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~~~~~~~~~~ 179 (481)
|-+|.|++..|.+.. .-++.+-.+.++..++++...+++ |+-+-++.-|.|.|.+.++..
T Consensus 47 T~v~P~~ll~Pf~~g~wk~t~~G~~igi~~~gv~Si~aAll------------------Y~~~l~k~~g~W~Gi~YG~~~ 108 (173)
T PF11085_consen 47 TEVGPNFLLEPFALGDWKNTWLGNLIGIVFIGVFSIVAALL------------------YYALLKKFKGPWPGILYGLAW 108 (173)
T ss_pred cccccChhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHhcccchHHHHHHHH
Confidence 567888888898775 244554445555555555544443 444556666788887777765
Q ss_pred HHH
Q 044157 180 IFI 182 (481)
Q Consensus 180 ~~~ 182 (481)
+..
T Consensus 109 W~i 111 (173)
T PF11085_consen 109 WAI 111 (173)
T ss_pred HHH
Confidence 543
No 113
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=37.39 E-value=1.4e+02 Score=23.84 Aligned_cols=26 Identities=27% Similarity=0.364 Sum_probs=20.6
Q ss_pred CCcHHHHHHHHHHHHHhHHHhHHHHH
Q 044157 89 SGSLSSAIFLVAGTTVGAGILAIPAV 114 (481)
Q Consensus 89 ~~s~~~a~~~iigt~IGaGIL~LP~~ 114 (481)
..|+.|......+..+|.|+..+-..
T Consensus 16 GlT~RQl~~l~~~~~~~~~~~~~~~~ 41 (93)
T PF12666_consen 16 GLTLRQLICLAIGALVGVGVYLLLWF 41 (93)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888999999999999888765443
No 114
>COG0586 DedA Uncharacterized membrane-associated protein [Function unknown]
Probab=35.22 E-value=3.8e+02 Score=25.02 Aligned_cols=98 Identities=15% Similarity=0.071 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChhhhH
Q 044157 94 SAIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQ 173 (481)
Q Consensus 94 ~a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~~~~ 173 (481)
+.+....|...+.|-+.++.+... +.+..+++-.+.++-+....+-..+...+.-.-...+-+-+++.|.|+|..
T Consensus 39 e~iL~~~G~l~~~g~~~~~~~i~~-----~~lga~lGd~i~Y~iGr~~G~~~l~~~~~~~~~~~~~l~~a~~~f~r~G~~ 113 (208)
T COG0586 39 EVLLLLAGALAAQGKLNLWLVILV-----ATLGALLGDLISYWIGRRFGRKLLRKLWSYRLLKRKKLDKAELLFERHGLF 113 (208)
T ss_pred hHHHHHHHHHHhCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHHHhcHHHHHhhhhhccCCHHHHHHHHHHHHHcCch
Confidence 345555566666664443333221 111223333455666666653332222110001346888899999998876
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHh
Q 044157 174 IASWSYIFIHYTLLVAYVARSSD 196 (481)
Q Consensus 174 ~~~~~~~~~~~~~~~ay~~~~g~ 196 (481)
.+-..-++-..=..+.+.++...
T Consensus 114 ~vf~~RFip~vRt~ip~~AG~~~ 136 (208)
T COG0586 114 AIFLGRFIPGVRTLVPIVAGMSK 136 (208)
T ss_pred hhhhhcccchhHhhhhHhhhhcc
Confidence 65544433322233334444443
No 115
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=34.66 E-value=1.5e+02 Score=25.36 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhHHHhHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChh
Q 044157 95 AIFLVAGTTVGAGILAIPAVTQEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTV 170 (481)
Q Consensus 95 a~~~iigt~IGaGIL~LP~~~a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~ 170 (481)
....+.| .+|.+++..-. +.|...+.+..+++-.++.|+-.++++-..+..+. +...|+|. +||.
T Consensus 40 ~~~vllg-~l~~~l~n~~~---~~g~~~a~vftivaif~~~ya~~lY~kRa~~Ir~R---~~~pyDD~----~GP~ 104 (126)
T COG5264 40 SVTVLLG-GLGFALYNSGD---RLGMISAYVFTIVAIFCGFYALMLYLKRAVNIRQR---SAGPYDDR----LGPT 104 (126)
T ss_pred HHHHHHH-HHHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCccc----cCCc
Confidence 3333444 47777777655 56666677777777777888888888877776642 34456653 5554
No 116
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=30.54 E-value=6.3e+02 Score=26.18 Aligned_cols=27 Identities=11% Similarity=0.290 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcccC
Q 044157 127 VILCWIFMVVTGLLIAEVNVNTMCELG 153 (481)
Q Consensus 127 lil~~~~~~~t~~~l~el~~~~~~~~g 153 (481)
+.++=+++..++.++-+..+++|+-.|
T Consensus 212 l~igNvfAIi~aall~~iG~K~psltG 238 (438)
T COG3493 212 LTIGNVFAIICAALLNKIGKKKPSLTG 238 (438)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCccC
Confidence 344556777778888888888775433
No 117
>PF03169 OPT: OPT oligopeptide transporter protein; InterPro: IPR004813 The transporter OPT family are transporters of small oligopeptides, demonstrated experimentally in three different species of yeast. OPT1 is not a member of the ABC or PTR membrane transport families [].; GO: 0055085 transmembrane transport
Probab=29.98 E-value=7.9e+02 Score=27.11 Aligned_cols=58 Identities=16% Similarity=0.304 Sum_probs=37.3
Q ss_pred HHHhHHHHHH--HhhchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChh
Q 044157 106 AGILAIPAVT--QEAGFLASAVAVILCWIFMVVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTV 170 (481)
Q Consensus 106 aGIL~LP~~~--a~~G~~~~~i~lil~~~~~~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~ 170 (481)
.++....... .+..++..++.++++.+++...+...++... .| ..++..+.+-.+|-.
T Consensus 369 ~~~~~~~~~~~~~~~p~~~~ilai~la~v~~~~~~~~~g~t~~-~P------~~~~~~~sqli~g~~ 428 (624)
T PF03169_consen 369 LAIIVVEAWFGQTQMPWWGLILAILLAFVFSIPSGRITGETGI-NP------VSGLNILSQLIFGLL 428 (624)
T ss_pred HHHHHHhhhhcccCCchhhhHHHHHHHHHHHHHHHHHhhhcCC-Cc------chhhhHHHHHHHHHH
Confidence 3445555555 3455666777788888888888888777766 33 335666666666543
No 118
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=26.78 E-value=2.1e+02 Score=24.16 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhHHHhHHH
Q 044157 92 LSSAIFLVAGTTVGAGILAIP 112 (481)
Q Consensus 92 ~~~a~~~iigt~IGaGIL~LP 112 (481)
++..+..+.-..+|+..+.+.
T Consensus 41 wK~I~la~~Lli~G~~li~~g 61 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIG 61 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445555544444
No 119
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=25.26 E-value=7.4e+02 Score=26.70 Aligned_cols=83 Identities=14% Similarity=0.204 Sum_probs=42.2
Q ss_pred HHHHHHHHHHhhhhhcccCCCCCCHHHHHHHHhChhhhHHHHHH---HHHHHH--HHHHH-HHHHhHhHhhhhhcCchHH
Q 044157 135 VVTGLLIAEVNVNTMCELGSGGVSLVSMAMRTIGTVGVQIASWS---YIFIHY--TLLVA-YVARSSDILTNFLGIPLWE 208 (481)
Q Consensus 135 ~~t~~~l~el~~~~~~~~g~~~~s~~~~a~~~~G~~~~~~~~~~---~~~~~~--~~~~a-y~~~~g~~l~~~~~lp~~~ 208 (481)
...+..+...+.+.++ .++..++..+.+...+.+++-.. +++..+ +-+-. ..+..++.+++ .|++...
T Consensus 308 ~i~GivYG~~sG~iks-----~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~-~~~~~~~ 381 (502)
T PF03806_consen 308 LIPGIVYGIASGTIKS-----DKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKS-LGLPGIP 381 (502)
T ss_pred HHHHHHHhhhhceecC-----HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh-cCCCcHH
Confidence 4566667777766542 23455555666655555544322 221111 11111 22344555554 3566655
Q ss_pred HHHHHHHHHHHHHhh
Q 044157 209 SATLFSLILGGLCYF 223 (481)
Q Consensus 209 ~~i~~~li~~~i~~l 223 (481)
..+.++++.+.+|++
T Consensus 382 l~i~fill~a~iNLf 396 (502)
T PF03806_consen 382 LIIGFILLTAFINLF 396 (502)
T ss_pred HHHHHHHHHHHHHHh
Confidence 566676777777765
No 120
>PF14256 YwiC: YwiC-like protein
Probab=24.15 E-value=4e+02 Score=22.93 Aligned_cols=47 Identities=13% Similarity=0.106 Sum_probs=29.2
Q ss_pred hhhHhhHHHHHHHHhCchHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhcc
Q 044157 391 PYLLTLIPPLVLSLLDPEIFFKALDFAGTYGVLVLFGILPAVMSWSDRYS 440 (481)
Q Consensus 391 ~~~l~~~~~llia~~~P~~f~~~l~~~G~~~~~~l~~ilP~l~~~~~r~~ 440 (481)
.|.+++.|.++-....|. -..+.-+.+.+.+ .....|...+.|.|++
T Consensus 7 AW~Ml~~P~l~G~~~~~~-w~~~~L~~aw~~~--yl~~~p~~~~~k~r~~ 53 (129)
T PF14256_consen 7 AWAMLLVPFLLGMAGGPS-WAHLPLLLAWLFG--YLAFYPFLLWLKQRRR 53 (129)
T ss_pred hHHHHHHHHHHHHHhccc-HHHHHHHHHHHHH--HHHHHHHHHHHhcccc
Confidence 366666766665566665 3444445666553 4566788888887663
No 121
>PRK09488 sdhD succinate dehydrogenase cytochrome b556 small membrane subunit; Provisional
Probab=22.16 E-value=3.9e+02 Score=22.54 Aligned_cols=27 Identities=11% Similarity=0.301 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044157 296 LSKVRTAIVVGTSIPLGLFLVWNAVIL 322 (481)
Q Consensus 296 ~k~~~kai~~g~~i~~v~Yll~~~~v~ 322 (481)
++..|+.......+..+.|.+|...++
T Consensus 86 ~~~lR~~l~~~~~~~l~~~~~w~~~il 112 (115)
T PRK09488 86 PLALRLMLQLVIVVALVVYVIYGFVVV 112 (115)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888889999998776543
No 122
>PF13347 MFS_2: MFS/sugar transport protein
Probab=21.65 E-value=6.5e+02 Score=25.75 Aligned_cols=27 Identities=22% Similarity=0.209 Sum_probs=16.4
Q ss_pred cccchhhhccCCCcHHHHHHHHHHHHH
Q 044157 78 SNLNQATLKRESGSLSSAIFLVAGTTV 104 (481)
Q Consensus 78 ~~~~~~~~~~~~~s~~~a~~~iigt~I 104 (481)
.+..++..++.+.+.++..+..+|+.+
T Consensus 129 ~~lt~~~~~R~~l~~~~~~~~~~g~~l 155 (428)
T PF13347_consen 129 PELTPDPDERTRLSSWRMIFSMIGSLL 155 (428)
T ss_pred ccccccHhhhhhHHHHHHHHHHHHHHH
Confidence 444444445666777777777777743
Done!