BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044158
(892 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 209 bits (533), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 209/696 (30%), Positives = 322/696 (46%), Gaps = 72/696 (10%)
Query: 147 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQ 206
++ L LDLS + L S+GS LK L + SN + GL +L L+
Sbjct: 93 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLE 151
Query: 207 ELYIDHNDFIGS--LPWCLAN-LTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNH 263
L + N G+ + W L++ L+ L + N+++ ++ S ++L E L +S+N+
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL---EFLDVSSNN 208
Query: 264 FQIPMSLEPFF-NYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTI 322
F + PF + S L+ N++ G+ + S+ T + +L +IS + G I
Sbjct: 209 FSTGI---PFLGDCSALQHLDISGNKLSGDFSRAISTCT-ELKLLNISSNQFV----GPI 260
Query: 323 PKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNII 382
P L+++ +++ GE P +L L + L+ N G S +
Sbjct: 261 PPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 318
Query: 383 ALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMN-SLIYLDLSNNQLT 441
+L +S N G +P++ + L L +SFN F+G +P S +++ SL+ LDLS+N +
Sbjct: 319 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 378
Query: 442 GEIPEHLAMGCFNLEYXXXXXXXXXXXXFSKKINLTKLKRLNLDGNHFIGGIPESLSNCS 501
G I +L C N + L+ L L N F G IP +LSNCS
Sbjct: 379 GPILPNL---CQNPK--------------------NTLQELYLQNNGFTGKIPPTLSNCS 415
Query: 502 SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 561
L L++S N +SG+IP+ +G++S L + + N LEG IP E + LE L L N++
Sbjct: 416 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 475
Query: 562 AGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXX 621
G +G S C+ L + L NNRL G IP W+GRL L L L+NN+F G +P
Sbjct: 476 TGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 622 XXXXXXXXSHNNFSGQIPPCLDNTSLHREEG--YYDLIPTYRNEYDIVSYNVGPSMGEKE 679
+ N F+G IP ++ ++ G + I R Y G
Sbjct: 535 RSLIWLDLNTNLFNGTIP-----AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 680 TIDFT-----------------TKERSYTYKGQPLESIHG----LDLSCNKLIGEIPSRI 718
++F R Y P +G LD+S N L G IP I
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 649
Query: 719 GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778
G + + LNL N+++G+IP +LR + LDLS N L G+IP + L L ++
Sbjct: 650 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 709
Query: 779 HNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPK 814
+NNLSG IPE + QF TF + NP LCG PLP+
Sbjct: 710 NNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPR 744
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 179/627 (28%), Positives = 267/627 (42%), Gaps = 110/627 (17%)
Query: 26 AIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLS 85
+DL + +I+ A + + L +L+ L +SGN I+G V+ +S NL+FLD+S
Sbjct: 152 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD------VSRCVNLEFLDVS 205
Query: 86 HNSFXXXXXXXXXXXXXXXXXXXAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPK 145
N+F N+L G + + + + L+ L++S N+ V P
Sbjct: 206 SNNFSTGIPFLGDCSALQHLDISG-NKLSGDFS-RAISTCTELKLLNISSNQ---FVGPI 260
Query: 146 DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQG------- 198
L+ L++L L+ + S G+ +L L L N+F V G
Sbjct: 261 PPLPLKSLQYLSLAENKFTGEIPDFLS-GACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 319
Query: 199 ----------------LCELAHLQELYIDHNDFIGSLPWCLANLT-SLRVLHVPDNQLT- 240
L ++ L+ L + N+F G LP L NL+ SL L + N +
Sbjct: 320 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 379
Query: 241 ---ENLSSSPLMHLTSIELLILSNNHF--QIPMSLEPFFNYSKLKIFHGRENQIFGEIES 295
NL +P +++ L L NN F +IP +L N S+L H N + G I S
Sbjct: 380 PILPNLCQNPK---NTLQELYLQNNGFTGKIPPTLS---NCSELVSLHLSFNYLSGTIPS 433
Query: 296 SHSSLTP----KFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLL 351
S SL+ K L + G IP+ L + LE +I+ ++ GE PS L
Sbjct: 434 SLGSLSKLRDLKLWLNMLE---------GEIPQELMYVKTLETLILDFNDLTGEIPSGL- 483
Query: 352 ENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTI 411
N TNL I L+NN +L G IP IG+ L NL L +
Sbjct: 484 SNCTNLNWISLSNN------------------------RLTGEIPKWIGR-LENLAILKL 518
Query: 412 SFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHL--AMGCFNLEYXXXXXXXXXXXX 469
S N+F+G+IP+ GD SLI+LDL+ N G IP + G +
Sbjct: 519 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 578
Query: 470 FSKK-------------INLTKLKRL------NLDGNHFIGGIPESLSNCSSLQGLYISD 510
KK I +L RL N+ + G + N S+ L +S
Sbjct: 579 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 638
Query: 511 NDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAF 570
N +SG IP +G++ +L + + N + G IP E L L ILDLS N + GR + A
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR-IPQAM 697
Query: 571 SKCSYLLTLDLCNNRLNGNIPNWMGRL 597
S + L +DL NN L+G IP MG+
Sbjct: 698 SALTMLTEIDLSNNNLSGPIPE-MGQF 723
Score = 122 bits (307), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 152/509 (29%), Positives = 227/509 (44%), Gaps = 72/509 (14%)
Query: 293 IESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISD--VNMRGEFPSWL 350
I S S LTS+ LS + S T L L+F+ +S ++ G+ L
Sbjct: 86 INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 145
Query: 351 LENNTNLRSIILANNSLSGPFRLP---TRSRKNIIALDISYNKLQGHIPVEIGKVLPNLG 407
N+ L + L+ NS+SG + + + L IS NK+ G V++ + + NL
Sbjct: 146 KLNS--LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCV-NLE 200
Query: 408 FLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXX 467
FL +S N F+ IP GD ++L +LD+S N+L+G+
Sbjct: 201 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD------------------------ 235
Query: 468 XXFSKKIN-LTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWM-GNIS 525
FS+ I+ T+LK LN+ N F+G IP SLQ L +++N +G IP ++ G
Sbjct: 236 --FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD 291
Query: 526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNR 585
L + + NH G +P F LE L LS NN +G K L LDL N
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 351
Query: 586 LNGNIPNWMGRLS-QLRYLILANNNFEGEV-PXXXXXXXXXXXXXXSHNN-FSGQIPPCL 642
+G +P + LS L L L++NNF G + P NN F+G+IPP L
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 643 DNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHG 702
N S +L+ + ++ +S + S+G L +
Sbjct: 412 SNCS--------ELVSLHL-SFNYLSGTIPSSLGS-------------------LSKLRD 443
Query: 703 LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKI 762
L L N L GEIP + + + TL L N+LTG IP SN + + LS N LTG+I
Sbjct: 444 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 503
Query: 763 PPRLVELNALAVFTVAHNNLSGKIPERIA 791
P + L LA+ +++N+ SG IP +
Sbjct: 504 PKWIGRLENLAILKLSNNSFSGNIPAELG 532
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 174/680 (25%), Positives = 271/680 (39%), Gaps = 137/680 (20%)
Query: 43 SLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXX 102
S F L SLDLS N+++G V L L S LKFL++S N+
Sbjct: 91 SGFKCSASLTSLDLSRNSLSGPVTT--LTSLGSCSGLKFLNVSSNTLDFP---------- 138
Query: 103 XXXXXXAYNRLEGSINIEELDSLSNLEGLDMSDNEID--NLVVPKDYRGLRKLRFLDLSG 160
++ G + L++LE LD+S N I N+V G +L+ L +SG
Sbjct: 139 --------GKVSGGL------KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 184
Query: 161 LRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP 220
+I V + +L+ L + SNNF+ + L + + LQ L I N G
Sbjct: 185 NKISGDVDVSRCV----NLEFLDVSSNNFSTGIPF---LGDCSALQHLDISGNKLSGDFS 237
Query: 221 WCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIEL----------------------LI 258
++ T L++L++ NQ + PL L + L L
Sbjct: 238 RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 297
Query: 259 LSNNHFQIPMSLEPFF--------------NYSK------------LKIFHGRENQIFGE 292
LS NHF ++ PFF N+S LK+ N+ GE
Sbjct: 298 LSGNHFY--GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 355
Query: 293 IESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYH-QHHLEFVIISDVNMRGEFPSWLL 351
+ S ++L+ L ++ LS + S G +P + ++ L+ + + + G+ P L
Sbjct: 356 LPESLTNLSA--SLLTLDLSSNNFS-GPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TL 411
Query: 352 ENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTI 411
N + L S+ L+ N LSG S + L + N L+G IP E+ V L L +
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLIL 470
Query: 412 SFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXXXXFS 471
FN G IPS + +L ++ LSNN+LTGEIP+ +
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG---------------------- 508
Query: 472 KKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWM----GNIS-- 525
L L L L N F G IP L +C SL L ++ N +G+IP M G I+
Sbjct: 509 ---RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 565
Query: 526 FLDA---IIMPDNHLEGPIPSEFCQLDYLEILDLSKN--------NIAGRPLNG----AF 570
F+ + + ++ ++ L++ I N NI R G F
Sbjct: 566 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 625
Query: 571 SKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXXXXXXXXXXS 630
++ LD+ N L+G IP +G + L L L +N+ G +P S
Sbjct: 626 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 685
Query: 631 HNNFSGQIPPCLDNTSLHRE 650
N G+IP + ++ E
Sbjct: 686 SNKLDGRIPQAMSALTMLTE 705
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 209 bits (532), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 209/696 (30%), Positives = 322/696 (46%), Gaps = 72/696 (10%)
Query: 147 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQ 206
++ L LDLS + L S+GS LK L + SN + GL +L L+
Sbjct: 96 FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLE 154
Query: 207 ELYIDHNDFIGS--LPWCLAN-LTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNH 263
L + N G+ + W L++ L+ L + N+++ ++ S ++L E L +S+N+
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNL---EFLDVSSNN 211
Query: 264 FQIPMSLEPFF-NYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTI 322
F + PF + S L+ N++ G+ + S+ T + +L +IS + G I
Sbjct: 212 FSTGI---PFLGDCSALQHLDISGNKLSGDFSRAISTCT-ELKLLNISSNQFV----GPI 263
Query: 323 PKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNII 382
P L+++ +++ GE P +L L + L+ N G S +
Sbjct: 264 PPLPLKS--LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321
Query: 383 ALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMN-SLIYLDLSNNQLT 441
+L +S N G +P++ + L L +SFN F+G +P S +++ SL+ LDLS+N +
Sbjct: 322 SLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381
Query: 442 GEIPEHLAMGCFNLEYXXXXXXXXXXXXFSKKINLTKLKRLNLDGNHFIGGIPESLSNCS 501
G I +L C N + L+ L L N F G IP +LSNCS
Sbjct: 382 GPILPNL---CQNPK--------------------NTLQELYLQNNGFTGKIPPTLSNCS 418
Query: 502 SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 561
L L++S N +SG+IP+ +G++S L + + N LEG IP E + LE L L N++
Sbjct: 419 ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478
Query: 562 AGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXX 621
G +G S C+ L + L NNRL G IP W+GRL L L L+NN+F G +P
Sbjct: 479 TGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 622 XXXXXXXXSHNNFSGQIPPCLDNTSLHREEG--YYDLIPTYRNEYDIVSYNVGPSMGEKE 679
+ N F+G IP ++ ++ G + I R Y G
Sbjct: 538 RSLIWLDLNTNLFNGTIP-----AAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 680 TIDF-----------------TTKERSYTYKGQPLESIHG----LDLSCNKLIGEIPSRI 718
++F R Y P +G LD+S N L G IP I
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEI 652
Query: 719 GELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778
G + + LNL N+++G+IP +LR + LDLS N L G+IP + L L ++
Sbjct: 653 GSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712
Query: 779 HNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPK 814
+NNLSG IPE + QF TF + NP LCG PLP+
Sbjct: 713 NNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLPR 747
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 181/638 (28%), Positives = 269/638 (42%), Gaps = 110/638 (17%)
Query: 26 AIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLS 85
+DL + +I+ A + + L +L+ L +SGN I+G V+ +S NL+FLD+S
Sbjct: 155 VLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD------VSRCVNLEFLDVS 208
Query: 86 HNSFXXXXXXXXXXXXXXXXXXXAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPK 145
N+F N+L G + + + + L+ L++S N+ V P
Sbjct: 209 SNNFSTGIPFLGDCSALQHLDISG-NKLSGDFS-RAISTCTELKLLNISSNQ---FVGPI 263
Query: 146 DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQG------- 198
L+ L++L L+ + S G+ +L L L N+F V G
Sbjct: 264 PPLPLKSLQYLSLAENKFTGEIPDFLS-GACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322
Query: 199 ----------------LCELAHLQELYIDHNDFIGSLPWCLANLT-SLRVLHVPDNQLT- 240
L ++ L+ L + N+F G LP L NL+ SL L + N +
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382
Query: 241 ---ENLSSSPLMHLTSIELLILSNNHF--QIPMSLEPFFNYSKLKIFHGRENQIFGEIES 295
NL +P +++ L L NN F +IP +L N S+L H N + G I S
Sbjct: 383 PILPNLCQNPK---NTLQELYLQNNGFTGKIPPTLS---NCSELVSLHLSFNYLSGTIPS 436
Query: 296 SHSSLTP----KFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLL 351
S SL+ K L + G IP+ L + LE +I+ ++ GE PS L
Sbjct: 437 SLGSLSKLRDLKLWLNMLE---------GEIPQELMYVKTLETLILDFNDLTGEIPSGL- 486
Query: 352 ENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTI 411
N TNL I L+NN +L G IP IG+ L NL L +
Sbjct: 487 SNCTNLNWISLSNN------------------------RLTGEIPKWIGR-LENLAILKL 521
Query: 412 SFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHL--AMGCFNLEYXXXXXXXXXXXX 469
S N+F+G+IP+ GD SLI+LDL+ N G IP + G +
Sbjct: 522 SNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581
Query: 470 FSKK-------------INLTKLKRL------NLDGNHFIGGIPESLSNCSSLQGLYISD 510
KK I +L RL N+ + G + N S+ L +S
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641
Query: 511 NDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAF 570
N +SG IP +G++ +L + + N + G IP E L L ILDLS N + GR + A
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGR-IPQAM 700
Query: 571 SKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANN 608
S + L +DL NN L+G IP MG+ NN
Sbjct: 701 SALTMLTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNN 737
Score = 122 bits (306), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 152/509 (29%), Positives = 227/509 (44%), Gaps = 72/509 (14%)
Query: 293 IESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISD--VNMRGEFPSWL 350
I S S LTS+ LS + S T L L+F+ +S ++ G+ L
Sbjct: 89 INGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148
Query: 351 LENNTNLRSIILANNSLSGPFRLP---TRSRKNIIALDISYNKLQGHIPVEIGKVLPNLG 407
N+ L + L+ NS+SG + + + L IS NK+ G V++ + + NL
Sbjct: 149 KLNS--LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCV-NLE 203
Query: 408 FLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXX 467
FL +S N F+ IP GD ++L +LD+S N+L+G+
Sbjct: 204 FLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD------------------------ 238
Query: 468 XXFSKKIN-LTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWM-GNIS 525
FS+ I+ T+LK LN+ N F+G IP SLQ L +++N +G IP ++ G
Sbjct: 239 --FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACD 294
Query: 526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNR 585
L + + NH G +P F LE L LS NN +G K L LDL N
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354
Query: 586 LNGNIPNWMGRLS-QLRYLILANNNFEGEV-PXXXXXXXXXXXXXXSHNN-FSGQIPPCL 642
+G +P + LS L L L++NNF G + P NN F+G+IPP L
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 643 DNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHG 702
N S +L+ + ++ +S + S+G L +
Sbjct: 415 SNCS--------ELVSLHL-SFNYLSGTIPSSLGS-------------------LSKLRD 446
Query: 703 LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKI 762
L L N L GEIP + + + TL L N+LTG IP SN + + LS N LTG+I
Sbjct: 447 LKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEI 506
Query: 763 PPRLVELNALAVFTVAHNNLSGKIPERIA 791
P + L LA+ +++N+ SG IP +
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELG 535
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 177/681 (25%), Positives = 272/681 (39%), Gaps = 139/681 (20%)
Query: 43 SLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXX 102
S F L SLDLS N+++G V L L S LKFL++S N+
Sbjct: 94 SGFKCSASLTSLDLSRNSLSGPVTT--LTSLGSCSGLKFLNVSSNTLDFP---------- 141
Query: 103 XXXXXXAYNRLEGSINIEELDSLSNLEGLDMSDNEID--NLVVPKDYRGLRKLRFLDLSG 160
++ G + L++LE LD+S N I N+V G +L+ L +SG
Sbjct: 142 --------GKVSGGL------KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187
Query: 161 LRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP 220
+I V + +L+ L + SNNF+ + L + + LQ L I N G
Sbjct: 188 NKISGDVDVSRCV----NLEFLDVSSNNFSTGIPF---LGDCSALQHLDISGNKLSGDFS 240
Query: 221 WCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIEL----------------------LI 258
++ T L++L++ NQ + PL L + L L
Sbjct: 241 RAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300
Query: 259 LSNNHFQIPMSLEPFF--------------NYSK------------LKIFHGRENQIFGE 292
LS NHF ++ PFF N+S LK+ N+ GE
Sbjct: 301 LSGNHFY--GAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358
Query: 293 IESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYH-QHHLEFVIISDVNMRGEFPSWLL 351
+ S ++L+ L ++ LS + S G +P + ++ L+ + + + G+ P L
Sbjct: 359 LPESLTNLSA--SLLTLDLSSNNFS-GPILPNLCQNPKNTLQELYLQNNGFTGKIPP-TL 414
Query: 352 ENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTI 411
N + L S+ L+ N LSG S + L + N L+G IP E+ V L L +
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV-KTLETLIL 473
Query: 412 SFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXXXXFS 471
FN G IPS + +L ++ LSNN+LTGEIP+ +
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG---------------------- 511
Query: 472 KKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWM----GNIS-- 525
L L L L N F G IP L +C SL L ++ N +G+IP M G I+
Sbjct: 512 ---RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568
Query: 526 FLDAI---------IMPDNHLEGPIPSEFCQLDYLEILDLSKNN---IAGRPLNG----A 569
F+ + + H G + EF + ++ LS N I R G
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNL-LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627
Query: 570 FSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXXXXXXXXXX 629
F ++ LD+ N L+G IP +G + L L L +N+ G +P
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 630 SHNNFSGQIPPCLDNTSLHRE 650
S N G+IP + ++ E
Sbjct: 688 SSNKLDGRIPQAMSALTMLTE 708
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/226 (27%), Positives = 105/226 (46%), Gaps = 11/226 (4%)
Query: 517 IPTWMGNISFLDAIIMPD-NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSY 575
IP+ + N+ +L+ + + N+L GPIP +L L L ++ N++G + S+
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKT 126
Query: 576 LLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXXXXX-XXXXXSHNNF 634
L+TLD N L+G +P + L L + N G +P S N
Sbjct: 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186
Query: 635 SGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKG 694
+G+IPP N +L + DL RN + + + S + I ++
Sbjct: 187 TGKIPPTFANLNL----AFVDL---SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239
Query: 695 QPL-ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIP 739
L ++++GLDL N++ G +P + +L +H+LN+S NNL G IP
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 124/312 (39%), Gaps = 55/312 (17%)
Query: 519 TWMGNISFLDAIIMPDNHLE---------GPIPSEFCQLDYLEILDLSKNNIAGRPLNGA 569
TW+G + D N+L+ PIPS L YL L I G
Sbjct: 37 TWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFL-----YIGGI----- 86
Query: 570 FSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXXXXXXXXXX 629
N L G IP + +L+QL YL + + N G +P
Sbjct: 87 --------------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 630 SHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGE--KETIDFTTKE 687
S+N SG +PP + +SL G T+ + + +S + S G K T
Sbjct: 133 SYNALSGTLPPSI--SSLPNLVGI-----TF--DGNRISGAIPDSYGSFSKLFTSMTISR 183
Query: 688 RSYTYKGQPLES---IHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLT---GTIPVT 741
T K P + + +DLS N L G+ G ++L++N+L G + ++
Sbjct: 184 NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS 243
Query: 742 FSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSY 801
+ + LDL N + G +P L +L L V+ NNL G+IP+ FD +Y
Sbjct: 244 ----KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298
Query: 802 EGNPFLCGPPLP 813
N LCG PLP
Sbjct: 299 ANNKCLCGSPLP 310
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 101/238 (42%), Gaps = 31/238 (13%)
Query: 320 GTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRK 379
G IP + L ++ I+ N+ G P +L + T L ++ + N+LSG S
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT-LVTLDFSYNALSGTLPPSISSLP 149
Query: 380 NIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQ 439
N++ + N++ G IP G +TIS N G IP +F ++N L ++DLS N
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208
Query: 440 LTGEIPE-----------HLAMGCFNLEYXXXXXXXXXXXXFSKKINLTK-LKRLNLDGN 487
L G+ HLA + K+ L+K L L+L N
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDL--------------GKVGLSKNLNGLDLRNN 254
Query: 488 HFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNH--LEGPIPS 543
G +P+ L+ L L +S N++ G IP GN+ D +N P+P+
Sbjct: 255 RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPA 311
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 64/130 (49%)
Query: 708 NKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLV 767
N L+G IP I +L ++H L ++ N++G IP S ++ + +LD SYN L+G +PP +
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 768 ELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENRSSTEAST 827
L L T N +SG IP+ F+ L G P N N + + S
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSR 206
Query: 828 HDNEEDDNLI 837
+ E D +++
Sbjct: 207 NMLEGDASVL 216
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 9/224 (4%)
Query: 322 IPKFLYHQHHLEFVIISDVN-MRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKN 380
IP L + +L F+ I +N + G P + + T L + + + ++SG K
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKL-TQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 381 IIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIY-LDLSNNQ 439
++ LD SYN L G +P I LPNL +T N +G+IP S+G + L + +S N+
Sbjct: 127 LVTLDFSYNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185
Query: 440 LTGEIPEHLA-MGCFNLEYXXXXXXXXXXXXFSKKINLTKLKRLNLDGNHFIGGIPESLS 498
LTG+IP A + ++ F N K+ +G + S
Sbjct: 186 LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLS-- 243
Query: 499 NCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIP 542
+L GL + +N I G++P + + FL ++ + N+L G IP
Sbjct: 244 --KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 120/270 (44%), Gaps = 43/270 (15%)
Query: 156 LDLSGLRIRDGSKVLHSIGSFPSLKTLYLKS-NNFAKTVTTTQGLCELAHLQELYIDHND 214
LDLSGL + + S+ + P L LY+ NN + + +L L LYI H +
Sbjct: 55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPI--PPAIAKLTQLHYLYITHTN 112
Query: 215 FIGSLPWCLANLTSLRVLHVPDNQLTENL--SSSPLMHLTSIELLILSNNHFQIPMSLEP 272
G++P L+ + +L L N L+ L S S L +L I
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT----------------- 155
Query: 273 FFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHL 332
F G N+I G I S+ S + F TS+++S + + G IP + +L
Sbjct: 156 ---------FDG--NRISGAIPDSYGSFSKLF--TSMTISRNRLT--GKIPP-TFANLNL 199
Query: 333 EFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRS-RKNIIALDISYNKL 391
FV +S + G+ S L ++ N + I LA NSL+ F L KN+ LD+ N++
Sbjct: 200 AFVDLSRNMLEGD-ASVLFGSDKNTQKIHLAKNSLA--FDLGKVGLSKNLNGLDLRNNRI 256
Query: 392 QGHIPVEIGKVLPNLGFLTISFNAFNGSIP 421
G +P + + L L L +SFN G IP
Sbjct: 257 YGTLPQGLTQ-LKFLHSLNVSFNNLCGEIP 285
Score = 56.2 bits (134), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 6/147 (4%)
Query: 471 SKKINLTKLKRLNLDG-NHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDA 529
S NL L L + G N+ +G IP +++ + L LYI+ ++SG+IP ++ I L
Sbjct: 70 SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129
Query: 530 IIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLN--GAFSKCSYLLTLDLCNNRLN 587
+ N L G +P L L + N I+G + G+FSK ++ + NRL
Sbjct: 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK--LFTSMTISRNRLT 187
Query: 588 GNIPNWMGRLSQLRYLILANNNFEGEV 614
G IP L+ L ++ L+ N EG+
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLEGDA 213
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/181 (31%), Positives = 91/181 (50%), Gaps = 21/181 (11%)
Query: 109 AYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSK 168
A+N G IE + L+NL GL++ DN+I +L + L K+ L+LSG +++ S
Sbjct: 54 AFNT--GVTTIEGIQYLNNLIGLELKDNQITDLT---PLKNLTKITELELSGNPLKNVS- 107
Query: 169 VLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTS 228
+I S+KTL L S +T L L++LQ LY+D N P LA LT+
Sbjct: 108 ---AIAGLQSIKTLDLTSTQ----ITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTN 158
Query: 229 LRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQ 288
L+ L + +NQ+ + +PL +L+ + L +N + P + L H ++NQ
Sbjct: 159 LQYLSIGNNQVND---LTPLANLSKLTTLRADDNKIS---DISPLASLPNLIEVHLKDNQ 212
Query: 289 I 289
I
Sbjct: 213 I 213
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 67/170 (39%), Gaps = 47/170 (27%)
Query: 41 NFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXX 100
N S Q +++LDL+ I L+GLSNL+ L L N
Sbjct: 105 NVSAIAGLQSIKTLDLTSTQITDVT------PLAGLSNLQVLYLDLNQIT---------- 148
Query: 101 XXXXXXXXAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSG 160
NI L L+NL+ L + +N++++L + L LR D
Sbjct: 149 -----------------NISPLAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADD--- 188
Query: 161 LRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYI 210
+I D + + S P+L ++LK N + + LA+L L+I
Sbjct: 189 NKISD----ISPLASLPNLIEVHLKDNQISD-------VSPLANLSNLFI 227
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/175 (30%), Positives = 87/175 (49%), Gaps = 19/175 (10%)
Query: 115 GSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIG 174
G IE + L+NL GL++ DN+I +L + L K+ L+LSG +++ + +I
Sbjct: 52 GVTTIEGVQYLNNLIGLELKDNQITDLA---PLKNLTKITELELSGNPLKN----VSAIA 104
Query: 175 SFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHV 234
S+KTL L S +T L L++LQ LY+D N P LA LT+L+ L +
Sbjct: 105 GLQSIKTLDLTSTQ----ITDVTPLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSI 158
Query: 235 PDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQI 289
+ Q+++ +PL +L+ + L +N + P + L H + NQI
Sbjct: 159 GNAQVSD---LTPLANLSKLTTLKADDNKIS---DISPLASLPNLIEVHLKNNQI 207
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFP 177
+I L +L+NL GL + +N+I ++ + L L L+LS I D + ++
Sbjct: 99 DITPLANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISD----ISALSGLT 151
Query: 178 SLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDN 237
SL+ L NF VT + L L L+ L I N S LA LT+L L +N
Sbjct: 152 SLQQL-----NFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNN 204
Query: 238 QLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGR 285
Q+++ +PL LT+++ L L+ N + +L N + L + + +
Sbjct: 205 QISD---ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 249
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 26/156 (16%)
Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKV-------- 169
+I L SL+NL LD+++N+I NL GL KL L L +I + S +
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTN 286
Query: 170 -------LHSIGSFPSLKTL-YLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW 221
L I +LK L YL + ++ + L LQ L+ +N S
Sbjct: 287 LELNENQLEDISPISNLKNLTYLTL--YFNNISDISPVSSLTKLQRLFFSNNKV--SDVS 342
Query: 222 CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELL 257
LANLT++ L NQ+++ +PL +LT I L
Sbjct: 343 SLANLTNINWLSAGHNQISD---LTPLANLTRITQL 375
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFP 177
+I L +L+NL GL + +N+I ++ + L L L+LS I D + ++
Sbjct: 99 DITPLANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISD----ISALSGLT 151
Query: 178 SLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDN 237
SL+ L NF VT + L L L+ L I N S LA LT+L L +N
Sbjct: 152 SLQQL-----NFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNN 204
Query: 238 QLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGR 285
Q+++ +PL LT+++ L L+ N + +L N + L + + +
Sbjct: 205 QISD---ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 249
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 61/212 (28%), Positives = 89/212 (41%), Gaps = 43/212 (20%)
Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFP 177
+I L L+NLE L ++N+I + + P L L L L+G +++D + ++ S
Sbjct: 186 DISVLAKLTNLESLIATNNQISD-ITPLGI--LTNLDELSLNGNQLKD----IGTLASLT 238
Query: 178 SLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDN 237
+L L L +N + L L L EL + N P LA LT+L L + +N
Sbjct: 239 NLTDLDLANNQISNLA----PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNEN 292
Query: 238 QLTE------------------NLSS-SPLMHLTSIELLILSNNHFQIPMSLEPFFNYSK 278
QL + N+S SP+ LT ++ L NN SL N +
Sbjct: 293 QLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINW 352
Query: 279 LKIFHGRENQIFGEIESSHSSLTPKFQLTSIS 310
L H NQI S LTP LT I+
Sbjct: 353 LSAGH---NQI--------SDLTPLANLTRIT 373
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 26/156 (16%)
Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKV-------- 169
+I L SL+NL LD+++N+I NL GL KL L L +I + S +
Sbjct: 230 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTN 286
Query: 170 -------LHSIGSFPSLKTL-YLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW 221
L I +LK L YL + ++ + L LQ L+ +N+ + +
Sbjct: 287 LELNENQLEDISPISNLKNLTYLTL--YFNNISDISPVSSLTKLQRLFF-YNNKVSDVS- 342
Query: 222 CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELL 257
LANLT++ L NQ+++ +PL +LT I L
Sbjct: 343 SLANLTNINWLSAGHNQISD---LTPLANLTRITQL 375
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 476 LTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWM-GNISFLDAIIMPD 534
LTKL LNLD N + + L L +++N ++ S+P + +++ LD + +
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116
Query: 535 NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM 594
N L+ F +L L+ L L+ N + P GAF K + L TL L N+L
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 595 GRLSQLRYLILANNNFE 611
RL +L+ + L N F+
Sbjct: 176 DRLGKLQTITLFGNQFD 192
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 126 SNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLK 185
++ E LD+ + L +RGL KL +L+L +++ S + L TL L
Sbjct: 35 ADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFD--DLTELGTLGLA 91
Query: 186 SNNFAKTVTTTQGLCE-LAHLQELYIDHNDFIGSLP-WCLANLTSLRVLHVPDNQLTENL 243
+N A + G+ + L L +LY+ N + SLP LT L+ L + NQL +++
Sbjct: 92 NNQLA---SLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQL-QSI 146
Query: 244 SSSPLMHLTSIELLILSNNHFQ 265
+ LT+++ L LS N Q
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQ 168
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 52/186 (27%)
Query: 403 LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXX 462
L L +L + +N F D+ L L L+NNQL L +G F+
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-----SLPLGVFD-------- 104
Query: 463 XXXXXXXFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWM- 521
+LT+L +L L GN S+P+ +
Sbjct: 105 ------------HLTQLDKLYLGGNQL-------------------------KSLPSGVF 127
Query: 522 GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL 581
++ L + + N L+ F +L L+ L LS N + P +GAF + L T+ L
Sbjct: 128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQTITL 186
Query: 582 CNNRLN 587
N+ +
Sbjct: 187 FGNQFD 192
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 10/122 (8%)
Query: 491 GGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIP-SEFCQLD 549
GIP ++ Q LY+ DN I+ P ++ L + + N L G +P F L
Sbjct: 36 AGIP------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 550 YLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNN 609
L +LDL N + P + F + +L L +C N+L +P + RL+ L +L L N
Sbjct: 89 QLTVLDLGTNQLTVLP-SAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146
Query: 610 FE 611
+
Sbjct: 147 LK 148
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 476 LTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWM-GNISFLDAIIMPD 534
LTKL LNLD N + + L L +++N ++ S+P + +++ LD + +
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGG 116
Query: 535 NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM 594
N L+ F +L L+ L L+ N + P GAF K + L TL L N+L
Sbjct: 117 NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-GAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 595 GRLSQLRYLILANNNFE 611
RL +L+ + L N F+
Sbjct: 176 DRLGKLQTITLFGNQFD 192
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 68/142 (47%), Gaps = 10/142 (7%)
Query: 126 SNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLK 185
++ E LD+ + L +RGL KL +L+L +++ S + L TL L
Sbjct: 35 ADTEKLDLQSTGLATLS-DATFRGLTKLTWLNLDYNQLQTLSAGVFD--DLTELGTLGLA 91
Query: 186 SNNFAKTVTTTQGLCE-LAHLQELYIDHNDFIGSLP-WCLANLTSLRVLHVPDNQLTENL 243
+N A + G+ + L L +LY+ N + SLP LT L+ L + NQL +++
Sbjct: 92 NNQLA---SLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQL-QSI 146
Query: 244 SSSPLMHLTSIELLILSNNHFQ 265
+ LT+++ L LS N Q
Sbjct: 147 PAGAFDKLTNLQTLSLSTNQLQ 168
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 52/186 (27%)
Query: 403 LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXX 462
L L +L + +N F D+ L L L+NNQL L +G F+
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-----SLPLGVFD-------- 104
Query: 463 XXXXXXXFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWM- 521
+LT+L +L L GN S+P+ +
Sbjct: 105 ------------HLTQLDKLYLGGNQL-------------------------KSLPSGVF 127
Query: 522 GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL 581
++ L + + N L+ F +L L+ L LS N + P +GAF + L T+ L
Sbjct: 128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP-HGAFDRLGKLQTITL 186
Query: 582 CNNRLN 587
N+ +
Sbjct: 187 FGNQFD 192
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 8/135 (5%)
Query: 653 YYDLIPTYRNEYDIVS--YNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKL 710
++D I + + I+S YN+G S G D ++T+KG + DLS +K+
Sbjct: 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD----PDNFTFKGLEASGVKTCDLSKSKI 287
Query: 711 IGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVE-L 769
+ S + L L++N + F L + L+LS N L G I R+ E L
Sbjct: 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENL 346
Query: 770 NALAVFTVAHNNLSG 784
+ L V +++N++
Sbjct: 347 DKLEVLDLSYNHIRA 361
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 63/145 (43%), Gaps = 3/145 (2%)
Query: 472 KKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAII 531
K + + +K +L + + S+ + L+ L ++ N+I+ ++ L +
Sbjct: 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329
Query: 532 MPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPL-NGAFSKCSYLLTLDLCNNRLNGNI 590
+ N L F LD LE+LDLS N+I R L + +F L L L N+L
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHI--RALGDQSFLGLPNLKELALDTNQLKSVP 387
Query: 591 PNWMGRLSQLRYLILANNNFEGEVP 615
RL+ L+ + L N ++ P
Sbjct: 388 DGIFDRLTSLQKIWLHTNPWDCSCP 412
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 67/243 (27%), Positives = 106/243 (43%), Gaps = 62/243 (25%)
Query: 545 FCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPN-WMGRLSQLRYL 603
F L +LEIL LS+N+I + GAF+ + L TL+L +NRL IPN LS+L+ L
Sbjct: 84 FKHLRHLEILQLSRNHIRTIEI-GAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL 141
Query: 604 ILANNNFEGEVPXXXXXXXXXXXXXXSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNE 663
L NN E IP+Y
Sbjct: 142 WLRNNPIES--------------------------------------------IPSY--- 154
Query: 664 YDIVSYNVGPSMGEKETIDFTTKERSYTYKG--QPLESIHGLDLS-CNKLIGEIPSRIGE 720
++N PS+ + + K SY +G + L ++ L+L+ CN + EIP+ +
Sbjct: 155 ----AFNRIPSLRRLDLGEL--KRLSYISEGAFEGLSNLRYLNLAMCN--LREIPN-LTP 205
Query: 721 LIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHN 780
LI++ L+LS N+L+ P +F L ++ L + + + L +L +AHN
Sbjct: 206 LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN 265
Query: 781 NLS 783
NL+
Sbjct: 266 NLT 268
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 89/215 (41%), Gaps = 15/215 (6%)
Query: 45 FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXXXX 104
F + LE L LS N+I + +GL+NL L+L N
Sbjct: 84 FKHLRHLEILQLSRNHI----RTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLK 139
Query: 105 XXXXAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIR 164
N +E SI + + +L LD+ + + + + + GL LR+L+L+ +R
Sbjct: 140 ELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR 198
Query: 165 DGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTT-QGLCELAHLQELYIDHNDFIGSLPWCL 223
+ + ++ L L L N+ + + QG L HLQ+L++ +
Sbjct: 199 E----IPNLTPLIKLDELDLSGNHLSAIRPGSFQG---LMHLQKLWMIQSQIQVIERNAF 251
Query: 224 ANLTSLRVLHVPDNQLT--ENLSSSPLMHLTSIEL 256
NL SL +++ N LT + +PL HL I L
Sbjct: 252 DNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 51/182 (28%), Positives = 73/182 (40%), Gaps = 24/182 (13%)
Query: 341 NMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPT---RSRKNIIALDISYNKLQGHIPV 397
N PS T LR + L +N L LP + KN+ L ++ NKLQ +P+
Sbjct: 47 NKLSSLPSKAFHRLTKLRLLYLNDNKLQ---TLPAGIFKELKNLETLWVTDNKLQA-LPI 102
Query: 398 EIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFN--- 454
+ L NL L + N P F + L YL L N+L + L G F+
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-----QSLPKGVFDKLT 157
Query: 455 ----LEYXXXXXXXXXXXXFSKKINLTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYIS 509
L F K LT+LK L LD N + +PE + + L+ L +
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDK---LTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQ 213
Query: 510 DN 511
+N
Sbjct: 214 EN 215
Score = 33.5 bits (75), Expect = 0.48, Method: Composition-based stats.
Identities = 45/176 (25%), Positives = 78/176 (44%), Gaps = 9/176 (5%)
Query: 126 SNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLK 185
++ + LD+ N++ +L K + L KLR L L+ +++ + +L+TL++
Sbjct: 37 ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQTLPAGIFK--ELKNLETLWVT 93
Query: 186 SNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSS 245
N +L +L EL +D N P +LT L L + N+L ++L
Sbjct: 94 DNKLQALPIGV--FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPK 150
Query: 246 SPLMHLTSIELLILSNNHFQ-IPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSL 300
LTS++ L L NN + +P F ++LK NQ+ E + SL
Sbjct: 151 GVFDKLTSLKELRLYNNQLKRVPEG--AFDKLTELKTLKLDNNQLKRVPEGAFDSL 204
Score = 33.5 bits (75), Expect = 0.56, Method: Composition-based stats.
Identities = 54/221 (24%), Positives = 83/221 (37%), Gaps = 36/221 (16%)
Query: 417 NGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXXXXFSKKINL 476
+G + S + NS+ D S+ +LT IP ++ L+ F + L
Sbjct: 8 DGGVCSCNNNKNSV---DCSSKKLTA-IPSNIPADTKKLDLQSNKLSSLPSKAFHR---L 60
Query: 477 TKLKRLNLDGNHF---IGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP 533
TKL+ L L+ N GI + L N L+ L+++DN + + L + +
Sbjct: 61 TKLRLLYLNDNKLQTLPAGIFKELKN---LETLWVTDNKLQALPIGVFDQLVNLAELRLD 117
Query: 534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPL-----------------------NGAF 570
N L+ P F L L L L N + P GAF
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177
Query: 571 SKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE 611
K + L TL L NN+L L +L+ L L N ++
Sbjct: 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218
Score = 32.0 bits (71), Expect = 1.5, Method: Composition-based stats.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Query: 695 QPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLS 754
+ L+++ L ++ NKL +L+ + L L RN L P F +L ++ L L
Sbjct: 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLG 141
Query: 755 YNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPE 788
YN L +L +L + +N L ++PE
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPE 174
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFP 177
+I L +L+NL GL + +N+I ++ + L L L+LS I D + ++
Sbjct: 99 DITPLANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISD----ISALSGLT 151
Query: 178 SLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDN 237
SL+ L SN VT + L L L+ L I N S LA LT+L L +N
Sbjct: 152 SLQQLSFSSNQ----VTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNN 205
Query: 238 QLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGR 285
Q+++ +PL LT+++ L L+ N + +L N + L + + +
Sbjct: 206 QISD---ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 250
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 114/283 (40%), Gaps = 62/283 (21%)
Query: 51 LESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXXXXXXXXAY 110
L L+LS N I+ + LSGL++L+ L S N
Sbjct: 131 LNRLELSSNTISD------ISALSGLTSLQQLSFSSNQVTDLKPLANLT---------TL 175
Query: 111 NRLEGSIN----IEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDG 166
RL+ S N I L L+NLE L ++N+I + + P L L L L+G +++D
Sbjct: 176 ERLDISSNKVSDISVLAKLTNLESLIATNNQISD-ITPLGI--LTNLDELSLNGNQLKD- 231
Query: 167 SKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANL 226
+ ++ S +L L L +N + L L L EL + N P LA L
Sbjct: 232 ---IGTLASLTNLTDLDLANNQISNLA----PLSGLTKLTELKLGANQISNISP--LAGL 282
Query: 227 TSLRVLHVPDNQLTE------------------NLSS-SPLMHLTSIELLILSNNHFQIP 267
T+L L + +NQL + N+S SP+ LT ++ L SNN
Sbjct: 283 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFSNNKVSDV 342
Query: 268 MSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSIS 310
SL N + L H NQI S LTP LT I+
Sbjct: 343 SSLANLTNINWLSAGH---NQI--------SDLTPLANLTRIT 374
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 26/156 (16%)
Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKV-------- 169
+I L SL+NL LD+++N+I NL GL KL L L +I + S +
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTN 287
Query: 170 -------LHSIGSFPSLKTL-YLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW 221
L I +LK L YL + ++ + L LQ L+ +N S
Sbjct: 288 LELNENQLEDISPISNLKNLTYLTL--YFNNISDISPVSSLTKLQRLFFSNNKV--SDVS 343
Query: 222 CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELL 257
LANLT++ L NQ+++ +PL +LT I L
Sbjct: 344 SLANLTNINWLSAGHNQISD---LTPLANLTRITQL 376
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 40/190 (21%)
Query: 427 MNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXXXXFSKKINLTKLKRLNLDG 486
+N+L ++ SNNQLT P NLTKL + ++
Sbjct: 62 LNNLTQINFSNNQLTDITPLK---------------------------NLTKLVDILMNN 94
Query: 487 NHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFC 546
N P L+N ++L GL + +N I+ P + N++ L+ + + N + S
Sbjct: 95 NQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALS 148
Query: 547 QLDYLEILDLSKNNIAG-RPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLIL 605
L L+ L S N + +PL + + L LD+ +N+++ + + +L+ L LI
Sbjct: 149 GLTSLQQLSFSSNQVTDLKPL----ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIA 202
Query: 606 ANNNFEGEVP 615
NN P
Sbjct: 203 TNNQISDITP 212
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFP 177
+I L +L+NL GL + +N+I ++ + L L L+LS I D + ++
Sbjct: 99 DITPLANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISD----ISALSGLT 151
Query: 178 SLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDN 237
SL+ L SN VT + L L L+ L I N S LA LT+L L +N
Sbjct: 152 SLQQLSFSSNQ----VTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNN 205
Query: 238 QLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGR 285
Q+++ +PL LT+++ L L+ N + +L N + L + + +
Sbjct: 206 QISD---ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 250
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 113/283 (39%), Gaps = 62/283 (21%)
Query: 51 LESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXXXXXXXXAY 110
L L+LS N I+ + LSGL++L+ L S N
Sbjct: 131 LNRLELSSNTISD------ISALSGLTSLQQLSFSSNQVTDLKPLANLT---------TL 175
Query: 111 NRLEGSIN----IEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDG 166
RL+ S N I L L+NLE L ++N+I + + P L L L L+G +++D
Sbjct: 176 ERLDISSNKVSDISVLAKLTNLESLIATNNQISD-ITPLGI--LTNLDELSLNGNQLKD- 231
Query: 167 SKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANL 226
+ ++ S +L L L +N + L L L EL + N P LA L
Sbjct: 232 ---IGTLASLTNLTDLDLANNQISNLA----PLSGLTKLTELKLGANQISNISP--LAGL 282
Query: 227 TSLRVLHVPDNQLTE------------------NLSS-SPLMHLTSIELLILSNNHFQIP 267
T+L L + +NQL + N+S SP+ LT ++ L NN
Sbjct: 283 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 342
Query: 268 MSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSIS 310
SL N + L H NQI S LTP LT I+
Sbjct: 343 SSLANLTNINWLSAGH---NQI--------SDLTPLANLTRIT 374
Score = 33.9 bits (76), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 26/156 (16%)
Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKV-------- 169
+I L SL+NL LD+++N+I NL GL KL L L +I + S +
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTN 287
Query: 170 -------LHSIGSFPSLKTL-YLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW 221
L I +LK L YL + ++ + L LQ L+ +N+ + +
Sbjct: 288 LELNENQLEDISPISNLKNLTYLTL--YFNNISDISPVSSLTKLQRLFF-YNNKVSDVS- 343
Query: 222 CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELL 257
LANLT++ L NQ+++ +PL +LT I L
Sbjct: 344 SLANLTNINWLSAGHNQISD---LTPLANLTRITQL 376
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 80/190 (42%), Gaps = 40/190 (21%)
Query: 427 MNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXXXXFSKKINLTKLKRLNLDG 486
+N+L ++ SNNQLT P NLTKL + ++
Sbjct: 62 LNNLTQINFSNNQLTDITPLK---------------------------NLTKLVDILMNN 94
Query: 487 NHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFC 546
N P L+N ++L GL + +N I+ P + N++ L+ + + N + S
Sbjct: 95 NQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALS 148
Query: 547 QLDYLEILDLSKNNIAG-RPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLIL 605
L L+ L S N + +PL + + L LD+ +N+++ + + +L+ L LI
Sbjct: 149 GLTSLQQLSFSSNQVTDLKPL----ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIA 202
Query: 606 ANNNFEGEVP 615
NN P
Sbjct: 203 TNNQISDITP 212
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 16/168 (9%)
Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFP 177
+I L +L+NL GL + +N+I ++ + L L L+LS I D + ++
Sbjct: 99 DITPLANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISD----ISALSGLT 151
Query: 178 SLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDN 237
SL+ L SN VT + L L L+ L I N S LA LT+L L +N
Sbjct: 152 SLQQLNFSSNQ----VTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNN 205
Query: 238 QLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGR 285
Q+++ +PL LT+++ L L+ N + +L N + L + + +
Sbjct: 206 QISD---ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 250
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 114/283 (40%), Gaps = 62/283 (21%)
Query: 51 LESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXXXXXXXXAY 110
L L+LS N I+ + LSGL++L+ L+ S N
Sbjct: 131 LNRLELSSNTISD------ISALSGLTSLQQLNFSSNQVTDLKPLANLT---------TL 175
Query: 111 NRLEGSIN----IEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDG 166
RL+ S N I L L+NLE L ++N+I + + P L L L L+G +++D
Sbjct: 176 ERLDISSNKVSDISVLAKLTNLESLIATNNQISD-ITPLGI--LTNLDELSLNGNQLKD- 231
Query: 167 SKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANL 226
+ ++ S +L L L +N + L L L EL + N P LA L
Sbjct: 232 ---IGTLASLTNLTDLDLANNQISNLA----PLSGLTKLTELKLGANQISNISP--LAGL 282
Query: 227 TSLRVLHVPDNQLTE------------------NLSS-SPLMHLTSIELLILSNNHFQIP 267
T+L L + +NQL + N+S SP+ LT ++ L NN
Sbjct: 283 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 342
Query: 268 MSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSIS 310
SL N + L H NQI S LTP LT I+
Sbjct: 343 SSLANLTNINWLSAGH---NQI--------SDLTPLANLTRIT 374
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 26/156 (16%)
Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKV-------- 169
+I L SL+NL LD+++N+I NL GL KL L L +I + S +
Sbjct: 231 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTN 287
Query: 170 -------LHSIGSFPSLKTL-YLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW 221
L I +LK L YL + ++ + L LQ L+ +N+ + +
Sbjct: 288 LELNENQLEDISPISNLKNLTYLTL--YFNNISDISPVSSLTKLQRLFF-YNNKVSDVS- 343
Query: 222 CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELL 257
LANLT++ L NQ+++ +PL +LT I L
Sbjct: 344 SLANLTNINWLSAGHNQISD---LTPLANLTRITQL 376
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 40/190 (21%)
Query: 427 MNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXXXXFSKKINLTKLKRLNLDG 486
+N+L ++ SNNQLT P NLTKL + ++
Sbjct: 62 LNNLTQINFSNNQLTDITPLK---------------------------NLTKLVDILMNN 94
Query: 487 NHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFC 546
N P L+N ++L GL + +N I+ P + N++ L+ + + N + S
Sbjct: 95 NQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALS 148
Query: 547 QLDYLEILDLSKNNIAG-RPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLIL 605
L L+ L+ S N + +PL + + L LD+ +N+++ + + +L+ L LI
Sbjct: 149 GLTSLQQLNFSSNQVTDLKPL----ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIA 202
Query: 606 ANNNFEGEVP 615
NN P
Sbjct: 203 TNNQISDITP 212
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFP 177
+I L +L+NL GL + +N+I ++ + L L L+LS I D + ++
Sbjct: 103 DITPLANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISD----ISALSGLT 155
Query: 178 SLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDN 237
SL+ L +F VT + L L L+ L I N S LA LT+L L +N
Sbjct: 156 SLQQL-----SFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNN 208
Query: 238 QLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGR 285
Q+++ +PL LT+++ L L+ N + +L N + L + + +
Sbjct: 209 QISD---ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 253
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 26/156 (16%)
Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKV-------- 169
+I L SL+NL LD+++N+I NL GL KL L L +I + S +
Sbjct: 234 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTN 290
Query: 170 -------LHSIGSFPSLKTL-YLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW 221
L I +LK L YL + ++ + L LQ L+ +N S
Sbjct: 291 LELNENQLEDISPISNLKNLTYLTL--YFNNISDISPVSSLTKLQRLFFANNKV--SDVS 346
Query: 222 CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELL 257
LANLT++ L NQ+++ +PL +LT I L
Sbjct: 347 SLANLTNINWLSAGHNQISD---LTPLANLTRITQL 379
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 80/168 (47%), Gaps = 17/168 (10%)
Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFP 177
+I L +L+NL GL + +N+I ++ + L L L+LS I D + ++
Sbjct: 104 DITPLANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLELSSNTISD----ISALSGLT 156
Query: 178 SLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDN 237
SL+ L +F VT + L L L+ L I N S LA LT+L L +N
Sbjct: 157 SLQQL-----SFGNQVTDLKPLANLTTLERLDISSNKV--SDISVLAKLTNLESLIATNN 209
Query: 238 QLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGR 285
Q+++ +PL LT+++ L L+ N + +L N + L + + +
Sbjct: 210 QISD---ITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 254
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 26/156 (16%)
Query: 118 NIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKV-------- 169
+I L SL+NL LD+++N+I NL GL KL L L +I + S +
Sbjct: 235 DIGTLASLTNLTDLDLANNQISNLA---PLSGLTKLTELKLGANQISNISPLAGLTALTN 291
Query: 170 -------LHSIGSFPSLKTL-YLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPW 221
L I +LK L YL + ++ + L LQ L+ +N+ + +
Sbjct: 292 LELNENQLEDISPISNLKNLTYLTL--YFNNISDISPVSSLTKLQRLFF-YNNKVSDVS- 347
Query: 222 CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELL 257
LANLT++ L NQ+++ +PL +LT I L
Sbjct: 348 SLANLTNINWLSAGHNQISD---LTPLANLTRITQL 380
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 76/293 (25%), Positives = 113/293 (38%), Gaps = 54/293 (18%)
Query: 337 ISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYN--KLQGH 394
IS + +FP+ NL+ + NN++ R RS + I L +++N ++G
Sbjct: 138 ISSIKFPKDFPA------RNLKVLDFQNNAIHYISREDMRSLEQAINLSLNFNGNNVKG- 190
Query: 395 IPVEIGK----VLPNLGF-----LTISFNAFNGSIPSSF--GDMNSLIYLDLSNNQLTG- 442
+E+G + +L F L++ FN S S G + D+S+ L G
Sbjct: 191 --IELGAFDSTIFQSLNFGGTPNLSVIFNGLQNSTTQSLWLGTFEDIDDEDISSAMLKGL 248
Query: 443 --------EIPEH-------LAMGCFNLEYXXXXXXXXXXXXFSKKINLTKLKRLNLDGN 487
+ EH CF S L LK+L L N
Sbjct: 249 CEMSVESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVN 308
Query: 488 HFIGGIPESLSNCSSLQGLYISDN----DISGSIPTWMGNISFLDAIIMPDNHLEGPIPS 543
HF S +N SL LYI N + +GN+ LD + N +E S
Sbjct: 309 HFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLD---LSHNDIEA---S 362
Query: 544 EFCQLD-----YLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP 591
+ C L +L+ L+LS N G + AF +C L LDL RL+ N P
Sbjct: 363 DCCSLQLKNLSHLQTLNLSHNEPLGLQ-SQAFKECPQLELLDLAFTRLHINAP 414
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 10/143 (6%)
Query: 122 LDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLH----SIGSFP 177
+ L+ L+ L +S N D L + F L+ L IR K LH +
Sbjct: 294 MKGLNLLKKLVLSVNHFDQLC------QISAANFPSLTHLYIRGNVKKLHLGVGCLEKLG 347
Query: 178 SLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDN 237
+L+TL L N+ + + L L+HLQ L + HN+ +G L +L +
Sbjct: 348 NLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFT 407
Query: 238 QLTENLSSSPLMHLTSIELLILS 260
+L N SP +L +++L L+
Sbjct: 408 RLHINAPQSPFQNLHFLQVLNLT 430
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 93/238 (39%), Gaps = 38/238 (15%)
Query: 35 ASALYLNFSLFTPFQQLESLDLSGNNIAG--CVENEGLEKLSGLSNLKFLDLSHNSFXXX 92
L+L L++LDLS N+I C +L LS+L+ L+LSHN
Sbjct: 333 VKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCS----LQLKNLSHLQTLNLSHNEPLGL 388
Query: 93 XXXXXXXXXXXXXXXXAYNRLEGSINIEELDSLSNLEGLDMS----DNEIDNLVVPKDYR 148
A+ RL + +L L+ L+++ D +L+
Sbjct: 389 QSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLA----- 443
Query: 149 GLRKLRFLDLSGLRIRDGS----KVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAH 204
GL LR L+L G +DG+ +L ++GS L+ L L S Q L
Sbjct: 444 GLPVLRHLNLKGNHFQDGTITKTNLLQTVGS---LEVLILSSCGLLSI--DQQAFHSLGK 498
Query: 205 LQELYIDHN----DFIGSLPWCLA----------NLTSLRVLHVPDNQLTENLSSSPL 248
+ + + HN D I SL N+ S R+L + Q T NLS +PL
Sbjct: 499 MSHVDLSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPILSQQSTINLSHNPL 556
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 45 FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXXXX 104
F F QL+ LDL+ ++ G + GL+ LK L LS N F
Sbjct: 271 FQCFTQLQELDLTATHLKGLPSG-----MKGLNLLKKLVLSVNHFDQLCQISAANFPSLT 325
Query: 105 XXXXAYNRLEGSINIEELDSLSNLEGLDMSDNEID-NLVVPKDYRGLRKLRFLDLS 159
N + + + L+ L NL+ LD+S N+I+ + + L L+ L+LS
Sbjct: 326 HLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLS 381
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 119/303 (39%), Gaps = 72/303 (23%)
Query: 512 DISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFS 571
++ SIP N +L+ + +N ++ F L +LEIL LSKN + + GAF+
Sbjct: 28 EVPASIPV---NTRYLN---LQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEV-GAFN 80
Query: 572 KCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXXXXXXXXXXSH 631
L TL+L +NRL LS+LR L L NN E
Sbjct: 81 GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES------------------- 121
Query: 632 NNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPS-----MGEKETIDFTTK 686
IP+Y ++N PS +GE + +++ ++
Sbjct: 122 -------------------------IPSY-------AFNRVPSLRRLDLGELKRLEYISE 149
Query: 687 ERSYTYKGQPLESIHGLDLS-CNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNL 745
++G L ++ L+L CN + +IP+ + L+R+ L LS N L P +F L
Sbjct: 150 A---AFEG--LVNLRYLNLGMCN--LKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 746 RQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNP 805
+ L L + + +L +L ++HNNL + + NP
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP 261
Query: 806 FLC 808
+ C
Sbjct: 262 WHC 264
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 66/135 (48%), Gaps = 13/135 (9%)
Query: 127 NLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLY 183
N L++ +N I ++ ++ LR L L LS +R K+ +G+F PSL TL
Sbjct: 36 NTRYLNLQENSIQ-VIRTDTFKHLRHLEILQLSKNLVR---KI--EVGAFNGLPSLNTLE 89
Query: 184 LKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP-WCLANLTSLRVLHVPDNQLTEN 242
L N T TQ L+ L+EL++ +N I S+P + + SLR L + + + E
Sbjct: 90 LFDNRL--TTVPTQAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 243 LSSSPLMHLTSIELL 257
+S + L ++ L
Sbjct: 147 ISEAAFEGLVNLRYL 161
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.7 bits (86), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 119/303 (39%), Gaps = 72/303 (23%)
Query: 512 DISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFS 571
++ SIP N +L+ + +N ++ F L +LEIL LSKN + + GAF+
Sbjct: 28 EVPASIPV---NTRYLN---LQENSIQVIRTDTFKHLRHLEILQLSKNLVRKIEV-GAFN 80
Query: 572 KCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPXXXXXXXXXXXXXXSH 631
L TL+L +NRL LS+LR L L NN E
Sbjct: 81 GLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIES------------------- 121
Query: 632 NNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPS-----MGEKETIDFTTK 686
IP+Y ++N PS +GE + +++ ++
Sbjct: 122 -------------------------IPSY-------AFNRVPSLRRLDLGELKRLEYISE 149
Query: 687 ERSYTYKGQPLESIHGLDLS-CNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNL 745
++G L ++ L+L CN + +IP+ + L+R+ L LS N L P +F L
Sbjct: 150 A---AFEG--LVNLRYLNLGMCN--LKDIPN-LTALVRLEELELSGNRLDLIRPGSFQGL 201
Query: 746 RQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNP 805
+ L L + + +L +L ++HNNL + + NP
Sbjct: 202 TSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNP 261
Query: 806 FLC 808
+ C
Sbjct: 262 WHC 264
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 86/201 (42%), Gaps = 41/201 (20%)
Query: 127 NLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSF---PSLKTLY 183
N L++ +N I ++ ++ LR L L LS +R K+ +G+F PSL TL
Sbjct: 36 NTRYLNLQENSIQ-VIRTDTFKHLRHLEILQLSKNLVR---KI--EVGAFNGLPSLNTLE 89
Query: 184 LKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP-WCLANLTSLRVLHVPDNQLTEN 242
L N T TQ L+ L+EL++ N+ I S+P + + SLR L + + + E
Sbjct: 90 LFDNRL--TTVPTQAFEYLSKLRELWL-RNNPIESIPSYAFNRVPSLRRLDLGELKRLEY 146
Query: 243 LSSSP----------------------LMHLTSIELLILSNNHFQI--PMSLEPFFNYSK 278
+S + L L +E L LS N + P S + + K
Sbjct: 147 ISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRK 206
Query: 279 LKIFHGR----ENQIFGEIES 295
L + H + E F +++S
Sbjct: 207 LWLMHAQVATIERNAFDDLKS 227
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 37.7 bits (86), Expect = 0.029, Method: Composition-based stats.
Identities = 52/202 (25%), Positives = 84/202 (41%), Gaps = 30/202 (14%)
Query: 111 NRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRD-GSKV 169
N L G I+ L+ LE LD+SDN +V P +RGL L L L +++ G +
Sbjct: 65 NALAG-IDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGL 123
Query: 170 LHSIGSFPSLKTLYLKSNNF-AKTVTTTQGLCELAH---------------------LQE 207
+ +L+ LYL+ NN A T + L L H L
Sbjct: 124 FRGLA---ALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDR 180
Query: 208 LYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIP 267
L + N P +L L L++ N L+ L + L+ L S++ L L++N +
Sbjct: 181 LLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSM-LPAEVLVPLRSLQYLRLNDNPWVCD 239
Query: 268 MSLEPFFNYSKLKIFHGRENQI 289
P + + L+ F G +++
Sbjct: 240 CRARPLWAW--LQKFRGSSSEV 259
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 6/121 (4%)
Query: 492 GIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYL 551
GIP +S Q +++ N IS + L + + N L G + F L L
Sbjct: 28 GIP------ASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLL 81
Query: 552 EILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE 611
E LDLS N F +L TL L L P L+ L+YL L +NN +
Sbjct: 82 EQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ 141
Query: 612 G 612
Sbjct: 142 A 142
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 81/323 (25%), Positives = 124/323 (38%), Gaps = 75/323 (23%)
Query: 11 QWQSVLCNATTSRVIAI--------DLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIA 62
Q ++VLC+ R +A+ LL L LN F F LE L+L+ NI
Sbjct: 12 QDRAVLCH--RKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELN-ENIV 68
Query: 63 GCVENEGLEKL---------------------SGLSNLKFLDLSHNS--------FXXXX 93
VE L +GLSNL LD+S N F
Sbjct: 69 SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128
Query: 94 XXXXXXXXXXXXXXXAYNRLEGSINIEEL------------DSLSNLEGLDMSDNEIDNL 141
++ G ++E+L ++LS+L GL + N+
Sbjct: 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI 188
Query: 142 VVPKDY--RGLRKLRFLDLS--------------GLRIRDGSKVLHSIGSFPSLKT---L 182
+DY + L +L+ L++S GL + S ++ + P L +
Sbjct: 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV 248
Query: 183 YLKSNNFA-KTVTTTQG--LCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQL 239
YL+ N + ++T +G L EL LQE+ + P+ L LRVL+V NQL
Sbjct: 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Query: 240 TENLSSSPLMHLTSIELLILSNN 262
T L S + ++E LIL +N
Sbjct: 309 T-TLEESVFHSVGNLETLILDSN 330
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%)
Query: 697 LESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYN 756
L ++ LD+S NK++ + +L + +L + N+L FS L +E L L
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 757 NLTGKIPPRLVELNALAVFTVAHNNLSG 784
NLT L L+ L V + H N++
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINA 190
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 37.0 bits (84), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 72/289 (24%), Positives = 117/289 (40%), Gaps = 54/289 (18%)
Query: 40 LNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXX 99
LN +F + L+ L+L+ N I + E GL NL+ L+LS+N
Sbjct: 281 LNSRVFETLKDLKVLNLAYNKINKIAD----EAFYGLDNLQVLNLSYNLLGELYSSNFYG 336
Query: 100 XXXXXXXXXAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNL----VVPKDYRGLRKL-- 153
N + I + L L+ LD+ DN + + +P + KL
Sbjct: 337 LPKVAYIDLQKNHI-AIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVT 395
Query: 154 --------RFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKT------------- 192
+ LS R+ + +L+ + P L+ L L N F+
Sbjct: 396 LPKINLTANLIHLSENRL-ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLE 454
Query: 193 ----------VTTTQGLC-----ELAHLQELYIDHNDFIGSL-PWCLANLTSLRVLHVPD 236
+ LC L+HLQ LY++HN ++ SL P ++LT+LR L +
Sbjct: 455 QLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNS 513
Query: 237 NQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGR 285
N+LT LS + L ++E+L +S N P + + F + S L I H +
Sbjct: 514 NRLTV-LSHNDLP--ANLEILDISRNQLLAP-NPDVFVSLSVLDITHNK 558
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 691 TYKGQPLESIHGLDLSCNKLIGEIPSRIGELIR-IHTLNLSRNNLTGTIPVTFSNLRQVE 749
T+ G S+ LDLS + + + SR+ E ++ + LNL+ N + F L ++
Sbjct: 259 TFAGLARSSVRHLDLS-HGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317
Query: 750 SLDLSYN 756
L+LSYN
Sbjct: 318 VLNLSYN 324
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 71/170 (41%), Gaps = 28/170 (16%)
Query: 419 SIPS-SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXXXXFSKKINLT 477
SIPS +F + SL+ LDL + I E G FNL+Y L
Sbjct: 161 SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MPNLTPLV 218
Query: 478 KLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHL 537
L+ L + GNHF P S SSL+ L++ ++ +S ++ N
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS----------------LIERNAF 262
Query: 538 EGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN 587
+G L L L+L+ NN++ P + F+ YL+ L L +N N
Sbjct: 263 DG--------LASLVELNLAHNNLSSLP-HDLFTPLRYLVELHLHHNPWN 303
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Query: 534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNW 593
+N+++ F L +LE+L L +N+I + GAF+ + L TL+L +N L
Sbjct: 84 ENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEV-GAFNGLASLNTLELFDNWLTVIPSGA 142
Query: 594 MGRLSQLRYLILANNNFE 611
LS+LR L L NN E
Sbjct: 143 FEYLSKLRELWLRNNPIE 160
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.6 bits (83), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 482 LNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPI 541
L LDGN F +P+ LSN L + +S+N IS N++ L +I+ N L
Sbjct: 36 LYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 542 PSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYL 576
P F L L +L L N+I+ P GAF+ S L
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVP-EGAFNDLSAL 128
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 541 IPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQL 600
+P E +L ++DLS N I+ N +FS + LLTL L NRL P L L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 601 RYLILANNNF 610
R L L N+
Sbjct: 105 RLLSLHGNDI 114
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 714 IPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVE-LNAL 772
+P + + ++LS N ++ +FSN+ Q+ +L LSYN L IPPR + L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL 104
Query: 773 AVFTVAHNNLSGKIPE-RIAQFATFDEDSYEGNPFLC 808
+ ++ N++S +PE + + NP C
Sbjct: 105 RLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYC 140
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 15/147 (10%)
Query: 476 LTKLKRLNLDGNHFIG---GIPESLSNCSSLQGLYISDNDISGSIPTW----MGNISFLD 528
LT L L L GN G+ + L+N L+ L + +N + S+P + N+++L+
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTN---LKELVLVENQLQ-SLPDGVFDKLTNLTYLN 139
Query: 529 AIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNG 588
+ N L+ F +L L LDLS N + P G F K + L L L N+L
Sbjct: 140 ---LAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP-EGVFDKLTQLKDLRLYQNQLKS 195
Query: 589 NIPNWMGRLSQLRYLILANNNFEGEVP 615
RL+ L+Y+ L +N ++ P
Sbjct: 196 VPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 33.1 bits (74), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 69/169 (40%), Gaps = 28/169 (16%)
Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
L+ TNL +IL N L N+ L + N+LQ +P + L NL +L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLN 139
Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXXXXF 470
++ N F + +L LDLS NQL + L G F+
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQL-----QSLPEGVFD---------------- 178
Query: 471 SKKINLTKLKRLNLDGNHFIGGIPESL-SNCSSLQGLYISDNDISGSIP 518
LT+LK L L N + +P+ + +SLQ +++ DN + P
Sbjct: 179 ----KLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 36.6 bits (83), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 53/134 (39%), Gaps = 4/134 (2%)
Query: 677 EKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSR--IGELIRIHTLNLSRNNL 734
E T+D T + + PL + L L+ N+L G I S G L + L L RN L
Sbjct: 9 EGTTVDCTGRGLKEIPRDIPLHTTE-LLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQL 66
Query: 735 TGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFA 794
TG P F ++ L L N + + L+ L + N +S +P
Sbjct: 67 TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126
Query: 795 TFDEDSYEGNPFLC 808
+ + NPF C
Sbjct: 127 SLTSLNLASNPFNC 140
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 15/217 (6%)
Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALD---ISYNKLQGHIPVEIGKVLPNLG 407
+N NL ++IL NN +S ++ + ++ L+ +S N+L+ +P ++ K L L
Sbjct: 72 FKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQEL- 126
Query: 408 FLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLA-MGCFNLEYXXXXXXXXX 466
+ N S F +N +I ++L N L E+ A G L Y
Sbjct: 127 --RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184
Query: 467 XXXFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISF 526
+LT+L +LDGN SL ++L L +S N IS + N
Sbjct: 185 TIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241
Query: 527 LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 563
L + + +N L +P Y++++ L NNI+
Sbjct: 242 LRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 277
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 147 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKT-VTTTQGLCELAHL 205
++G++KL ++ RI D + G PSL L+L N K + +GL LA
Sbjct: 167 FQGMKKLSYI-----RIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA-- 219
Query: 206 QELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTE 241
+L + N LAN LR LH+ +N+L +
Sbjct: 220 -KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 703 LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT--- 759
LDL NK+ L +HTL L N ++ P F+ L ++E L LS N L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 760 GKIPPRLVEL 769
K+P L EL
Sbjct: 117 EKMPKTLQEL 126
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 15/217 (6%)
Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALD---ISYNKLQGHIPVEIGKVLPNLG 407
+N NL ++IL NN +S ++ + ++ L+ +S N+L+ +P ++ K L L
Sbjct: 72 FKNLKNLHTLILINNKIS---KISPGAFAPLVKLERLYLSKNQLK-ELPEKMPKTLQEL- 126
Query: 408 FLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLA-MGCFNLEYXXXXXXXXX 466
+ N S F +N +I ++L N L E+ A G L Y
Sbjct: 127 --RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184
Query: 467 XXXFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISF 526
+LT+L +LDGN SL ++L L +S N IS + N
Sbjct: 185 TIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241
Query: 527 LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 563
L + + +N L +P Y++++ L NNI+
Sbjct: 242 LRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 277
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 147 YRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKT-VTTTQGLCELAHL 205
++G++KL ++ RI D + G PSL L+L N K + +GL LA
Sbjct: 167 FQGMKKLSYI-----RIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLA-- 219
Query: 206 QELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTE 241
+L + N LAN LR LH+ +N+L +
Sbjct: 220 -KLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 3/70 (4%)
Query: 703 LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT--- 759
LDL NK+ L +HTL L N ++ P F+ L ++E L LS N L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 760 GKIPPRLVEL 769
K+P L EL
Sbjct: 117 EKMPKTLQEL 126
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 202 LAHLQELY-IDHNDF----IGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIEL 256
L HL++L + H D + +LP LA L L VL DN L EN+ + +L ++
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL-ENVDG--VANLPRLQE 512
Query: 257 LILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGE 292
L+L NN Q +++P + +L + + + N + E
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 202 LAHLQELY-IDHNDF----IGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIEL 256
L HL++L + H D + +LP LA L L VL DN L EN+ + +L ++
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNAL-ENVDG--VANLPRLQE 512
Query: 257 LILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGE 292
L+L NN Q +++P + +L + + + N + E
Sbjct: 513 LLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 45 FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSF 89
F P + L LDLS NNIA NE L L GL NL+ LD HN+
Sbjct: 476 FRPLRNLTILDLSNNNIANI--NEDL--LEGLENLEILDFQHNNL 516
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 82/335 (24%), Positives = 126/335 (37%), Gaps = 85/335 (25%)
Query: 355 TNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIG-------------- 400
TNL + L +NS+ P +++KN+I LD+S+N L ++G
Sbjct: 97 TNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS---TKLGTGVQLENLQELLLA 153
Query: 401 --KVLP------------NLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPE 446
K+L +L L +S N P F + L L L+N QL + E
Sbjct: 154 KNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHLTE 213
Query: 447 HLA-----MGCFNLEYXXXXXXXXXXXXFS--KKINLTK--------------------- 478
L NL FS K NLT+
Sbjct: 214 KLCWELSNTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPS 273
Query: 479 LKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIP------------TWMGNISF 526
L+ L+L+ N+ P S S+L+ L + S+ W+ + +
Sbjct: 274 LRYLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEY 333
Query: 527 LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPL-NGAFSKCSY--LLTLDLCN 583
L+ M DN++ + F L L+ L LSK + + L N F ++ LLTL+L
Sbjct: 334 LN---MDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTK 390
Query: 584 NRL----NGNIPNWMGRLSQLRYLILANNNFEGEV 614
N + NG +W+G QLR L L N E ++
Sbjct: 391 NHISKIANGTF-SWLG---QLRILDLGLNEIEQKL 421
Score = 30.4 bits (67), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 45/114 (39%), Gaps = 5/114 (4%)
Query: 675 MGEKETIDFTTKERSYTYKGQP---LESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSR 731
+G+ +D E GQ L +I + LS NK + S + + L L R
Sbjct: 404 LGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRR 463
Query: 732 NNLTGT--IPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
L P F LR + LDLS NN+ L L L + HNNL+
Sbjct: 464 VALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLA 517
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 96/420 (22%), Positives = 161/420 (38%), Gaps = 97/420 (23%)
Query: 354 NTNLRSIILANNSLSGPFRLPTRSRK--NIIALDISYNKLQGHIPVEIG----KVLPNLG 407
NT+++++ LANN L K N+ LD+SYN L ++G LP+L
Sbjct: 221 NTSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLH-----DVGNGSFSYLPSLR 275
Query: 408 FLTISFNAFNGSIPSSFGDMNSLIYLDLSN--NQLTGEIPEHLAMGCFNLEYXXXXXXXX 465
+L++ +N P SF +++L YL L + + + H + F+ ++
Sbjct: 276 YLSLEYNNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQW-------- 327
Query: 466 XXXXFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNIS 525
L L+ LN+D N+ + + SL+ Y+S + S+ T + N +
Sbjct: 328 ----------LKYLEYLNMDDNNIPSTKSNTFTGLVSLK--YLSLSKTFTSLQT-LTNET 374
Query: 526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNR 585
F+ P L L+L+KN+I+ + NG FS L LDL N
Sbjct: 375 FVSLAHSP-----------------LLTLNLTKNHIS-KIANGTFSWLGQLRILDLGLNE 416
Query: 586 LNGNIP--NWMG-------RLSQLRYLILANNNFEGEVPXXXXXXXXXXXXXXSHNNFSG 636
+ + W G LS +YL L+ ++F VP +
Sbjct: 417 IEQKLSGQEWRGLRNIFEIYLSYNKYLQLSTSSF-ALVPSLQRLMLRRVALK------NV 469
Query: 637 QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYK--- 693
I P S R ++ N ++ ++ + E +DF + +K
Sbjct: 470 DISP-----SPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRAN 524
Query: 694 -GQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPV-TFSNLRQVESL 751
G P+ + GL +H LNL N L IPV F NL +++S+
Sbjct: 525 PGGPVNFLKGLS------------------HLHILNLESNGL-DEIPVGVFKNLFELKSI 565
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 65/249 (26%), Positives = 100/249 (40%), Gaps = 24/249 (9%)
Query: 48 FQQLESLDLSGNNI-----AGCVENEGLEKLSGLSNLKFLDLSHNSFXXXX--XXXXXXX 100
F L L + GN GC+EN L NL+ LDLSH+
Sbjct: 324 FPSLTHLSIKGNTKRLELGTGCLEN--------LENLRELDLSHDDIETSDCCNLQLRNL 375
Query: 101 XXXXXXXXAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSG 160
+YN S+ E LE LD++ + ++ L L+ L+LS
Sbjct: 376 SHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434
Query: 161 LRIRDGSKVLHSIGSFPSLKTLYLKSNNFAK-TVTTTQGLCELAHLQELYIDHNDFIGSL 219
+ S+ L P+L+ L L+ N+F K + T L L L+ L + D
Sbjct: 435 SLLDISSEQL--FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492
Query: 220 PWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPM-SLEPFFNYSK 278
+L + + + N+LT + S L HL I L L++NH I + SL P S+
Sbjct: 493 QHAFTSLKMMNHVDLSHNRLTSS-SIEALSHLKGI-YLNLASNHISIILPSLLPIL--SQ 548
Query: 279 LKIFHGREN 287
+ + R+N
Sbjct: 549 QRTINLRQN 557
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 114/271 (42%), Gaps = 56/271 (20%)
Query: 343 RGEFPSWLLENNTNLRSIILANNSL--SGPFRLPTRSRKNIIALDISYNKLQGHIPVEIG 400
R E + LEN NLR + L+++ + S L R+ ++ +L++SYN+ + E
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS-LKTEAF 396
Query: 401 KVLPNLGFLTISFNAFN-GSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXX 459
K P L L ++F S F +++ L L+LS++ L E L G
Sbjct: 397 KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS-SEQLFDG-------- 447
Query: 460 XXXXXXXXXXFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPT 519
L L+ LNL GNHF G ++ +SLQ L G +
Sbjct: 448 ----------------LPALQHLNLQGNHFPKG---NIQKTNSLQTL--------GRLEI 480
Query: 520 WMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYL--L 577
+ + L +I D H F L + +DLS N R + + S+L +
Sbjct: 481 LVLSFCDLSSI---DQH-------AFTSLKMMNHVDLSHN----RLTSSSIEALSHLKGI 526
Query: 578 TLDLCNNRLNGNIPNWMGRLSQLRYLILANN 608
L+L +N ++ +P+ + LSQ R + L N
Sbjct: 527 YLNLASNHISIILPSLLPILSQQRTINLRQN 557
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.0 bits (79), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 63/171 (36%), Gaps = 31/171 (18%)
Query: 44 LFTPFQQLESLDLSGNNIA--GCVENEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXX 101
+F QL L LS N ++ GC G ++LK+LDLS N
Sbjct: 47 VFDKLTQLTKLSLSSNGLSFKGCCSQSDF----GTTSLKYLDLSFNGVITMSSNFLGLEQ 102
Query: 102 XXXXXXXAYNRLEGS--------INIEELD---------------SLSNLEGLDMSDNEI 138
N + S N+ LD LS+LE L M+ N
Sbjct: 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162
Query: 139 DNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 189
+P + LR L FLDLS ++ S + S SL+ L + NNF
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPT--AFNSLSSLQVLNMSHNNF 211
Score = 29.6 bits (65), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 23/45 (51%)
Query: 738 IPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNL 782
+P F+ LR + LDLS L P L++L V ++HNN
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 142 VVPKDY-RGLRKLRFLDLS-GLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGL 199
+VP + + L+ L FLDLS L + + K G++PSL+TL L N+ T + L
Sbjct: 350 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 409
Query: 200 CELAHLQELYIDHNDF 215
L +L L I N F
Sbjct: 410 LTLKNLTSLDISRNTF 425
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 142 VVPKDY-RGLRKLRFLDLS-GLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGL 199
+VP + + L+ L FLDLS L + + K G++PSL+TL L N+ T + L
Sbjct: 324 LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEIL 383
Query: 200 CELAHLQELYIDHNDF 215
L +L L I N F
Sbjct: 384 LTLKNLTSLDISRNTF 399
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 697 LESIHGLDLSCNKLIGEIPSRIGELIR-IHTLNLSRNNLTGTIPVTFSNLR-QVESLDLS 754
+ S+ LD+S N L R I LNLS N LTG++ F L +V+ LDL
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---FRCLPPKVKVLDL- 457
Query: 755 YNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERI-AQFATFDEDSYEGNPFLCGPP 811
+NN IP + L AL VA N L +P+ + + + NP+ C P
Sbjct: 458 HNNRIMSIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 514
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 62/164 (37%), Gaps = 31/164 (18%)
Query: 51 LESLDLSGNNIA--GCVENEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXXXXXXXX 108
LE LDLS N ++ GC G ++LK+LDLS N
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDF----GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404
Query: 109 AYNRLEGS--------INIEELD---------------SLSNLEGLDMSDNEIDNLVVPK 145
N + S N+ LD LS+LE L M+ N +P
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 146 DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNF 189
+ LR L FLDLS ++ S + S SL+ L + NNF
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPT--AFNSLSSLQVLNMSHNNF 506
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 724 IHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
I LNL+ N L F+ Q+ SLD+ +N ++ P +L L V + HN LS
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
Query: 784 GKIPERIAQFAT 795
++ ++ F T
Sbjct: 92 -QLSDKTFAFCT 102
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
Query: 661 RNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQP---LESIHGLDLSCNKLIGEIPSR 717
+N+ + + +G E +D E GQ LE+I + LS NK + +
Sbjct: 395 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 454
Query: 718 IGELIRIHTLNLSRNNL--TGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVF 775
+ + L L R L + P F LR + LDLS NN+ L L L +
Sbjct: 455 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 514
Query: 776 TVAHNNLS 783
+ HNNL+
Sbjct: 515 DLQHNNLA 522
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 724 IHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
I LNL+ N L F+ Q+ SLD+ +N ++ P +L L V + HN LS
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
Query: 784 GKIPERIAQFAT 795
++ ++ F T
Sbjct: 87 -QLSDKTFAFCT 97
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
Query: 661 RNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQP---LESIHGLDLSCNKLIGEIPSR 717
+N+ + + +G E +D E GQ LE+I + LS NK + +
Sbjct: 390 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 449
Query: 718 IGELIRIHTLNLSRNNL--TGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVF 775
+ + L L R L + P F LR + LDLS NN+ L L L +
Sbjct: 450 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 509
Query: 776 TVAHNNLS 783
+ HNNL+
Sbjct: 510 DLQHNNLA 517
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 61/138 (44%), Gaps = 7/138 (5%)
Query: 476 LTKLKRLNLDGN--HFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP 533
L ++ L L GN H I + E ++L L ++ N + ++ L +++
Sbjct: 62 LPNVRYLALGGNKLHDISALKE----LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117
Query: 534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNW 593
+N L+ F +L L L L N + P G F K + L LDL NN+L
Sbjct: 118 ENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLP-KGVFDKLTNLTRLDLDNNQLQSLPEGV 176
Query: 594 MGRLSQLRYLILANNNFE 611
+L+QL+ L L +N +
Sbjct: 177 FDKLTQLKQLSLNDNQLK 194
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 476 LTKLKRLNLDGNHFIG---GIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIM 532
LT L L L GN G+ + L+N L+ L + +N + ++ L + +
Sbjct: 84 LTNLTYLILTGNQLQSLPNGVFDKLTN---LKELVLVENQLQSLPDGVFDKLTNLTYLYL 140
Query: 533 PDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPN 592
N L+ F +L L LDL N + P G F K + L L L +N+L
Sbjct: 141 YHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLP-EGVFDKLTQLKQLSLNDNQLKSVPDG 199
Query: 593 WMGRLSQLRYLILANNNFE 611
RL+ L ++ L NN ++
Sbjct: 200 VFDRLTSLTHIWLLNNPWD 218
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 68/162 (41%), Gaps = 28/162 (17%)
Query: 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLT 410
L+ TNL +IL N L N+ L + N+LQ +P + L NL +L
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLY 139
Query: 411 ISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXXXXF 470
+ N F + +L LDL NNQL + L G F+
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQL-----QSLPEGVFD---------------- 178
Query: 471 SKKINLTKLKRLNLDGNHFIGGIPESL-SNCSSLQGLYISDN 511
LT+LK+L+L+ N + +P+ + +SL +++ +N
Sbjct: 179 ----KLTQLKQLSLNDNQ-LKSVPDGVFDRLTSLTHIWLLNN 215
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 724 IHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783
I LNL+ N L F+ Q+ SLD+ +N ++ P +L L V + HN LS
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
Query: 784 GKIPERIAQFAT 795
++ ++ F T
Sbjct: 97 -QLSDKTFAFCT 107
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 5/128 (3%)
Query: 661 RNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQP---LESIHGLDLSCNKLIGEIPSR 717
+N+ + + +G E +D E GQ LE+I + LS NK + +
Sbjct: 400 KNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS 459
Query: 718 IGELIRIHTLNLSRNNL--TGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVF 775
+ + L L R L + P F LR + LDLS NN+ L L L +
Sbjct: 460 FALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEIL 519
Query: 776 TVAHNNLS 783
+ HNNL+
Sbjct: 520 DLQHNNLA 527
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 9/129 (6%)
Query: 653 YYDLIPTYRNEYDIVS--YNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKL 710
++D I + + I+S YN+G S G D ++T+KG + DLS +K+
Sbjct: 232 FFDAIAGTKIQSLILSNSYNMGSSFGHTNFKD----PDNFTFKGLEASGVKTCDLSKSKI 287
Query: 711 IGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG---KIPPRLV 767
+ S + L L++N + F L ++ L L N L I RL
Sbjct: 288 FALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLKELALDTNQLKSVPDGIFDRLT 347
Query: 768 ELNALAVFT 776
L + + T
Sbjct: 348 SLQKIWLHT 356
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 76/196 (38%), Gaps = 35/196 (17%)
Query: 51 LESLDLSGNNIA--GCVENEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXXXXXXXX 108
LE LDLS N ++ GC G ++LK+LDLS N
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDF----GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404
Query: 109 AYNRLEGS--------INIEELD---------------SLSNLEGLDMSDNEIDNLVVPK 145
N + S N+ LD LS+LE L M+ N +P
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 464
Query: 146 DYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCE-LAH 204
+ LR L FLDLS ++ S + S SL+ L + SN + G+ + L
Sbjct: 465 IFTELRNLTFLDLSQCQLEQLSPT--AFNSLSSLQVLNMASNQLK---SVPDGIFDRLTS 519
Query: 205 LQELYIDHNDFIGSLP 220
LQ++++ N + S P
Sbjct: 520 LQKIWLHTNPWDCSCP 535
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 33.1 bits (74), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNN 757
E++ LDLS N++ S + + + L L+ N + +FS+L +E LDLSYN
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 758 LT 759
L+
Sbjct: 112 LS 113
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 56/116 (48%), Gaps = 3/116 (2%)
Query: 501 SSLQGLYISDNDISGSIPTWMGN-ISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKN 559
+SL LY+ N + S+P + N ++ L + + N L+ F +L L+ L L+ N
Sbjct: 52 TSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTN 110
Query: 560 NIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVP 615
+ P +G F K + L L L N+L RL+ L+Y+ L +N ++ P
Sbjct: 111 QLQSLP-DGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 7/98 (7%)
Query: 516 SIPTWM-GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCS 574
S+PT + ++LD + N L+ F +L L L L N + P NG F+K +
Sbjct: 21 SVPTGIPAQTTYLD---LETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP-NGVFNKLT 76
Query: 575 YLLTLDLCNNRLNGNIPNWM-GRLSQLRYLILANNNFE 611
L L+L N+L ++PN + +L+QL+ L L N +
Sbjct: 77 SLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ 113
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNN 757
E++ LDLS N++ S + + + L L+ N + +FS+L +E LDLSYN
Sbjct: 26 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 85
Query: 758 LT 759
L+
Sbjct: 86 LS 87
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 150 LRKLRFLDLS-GLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL 208
L+ L +LDLS L + + K ++PSL+TL L+ N+ A T + L L +L +
Sbjct: 333 LKSLEYLDLSENLMVEEYLKNSACEDAWPSLQTLILRQNHLASLEKTGETLLTLKNLTNI 392
Query: 209 YIDHNDF 215
I N F
Sbjct: 393 DISKNSF 399
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.7 bits (73), Expect = 0.95, Method: Composition-based stats.
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 33/198 (16%)
Query: 117 INIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRD-GSKVLHSIGS 175
I+ L+ LE LD+SDN V P + GL +L L L +++ G + +
Sbjct: 70 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA- 128
Query: 176 FPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP-WCLANLTSL----- 229
+L+ LYL+ N T +L +L L++ H + I S+P L SL
Sbjct: 129 --ALQYLYLQDNALQALPDDT--FRDLGNLTHLFL-HGNRISSVPERAFRGLHSLDRLLL 183
Query: 230 ---RVLHVPDNQLTE------------NLSSSP---LMHLTSIELLILSNNHFQIPMSLE 271
RV HV + + NLS+ P L L +++ L L++N +
Sbjct: 184 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 243
Query: 272 PFFNYSKLKIFHGRENQI 289
P + + L+ F G +++
Sbjct: 244 PLWAW--LQKFRGSSSEV 259
Score = 30.4 bits (67), Expect = 5.0, Method: Composition-based stats.
Identities = 53/218 (24%), Positives = 81/218 (37%), Gaps = 31/218 (14%)
Query: 394 HIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNN-QLTGEIPEHLAMGC 452
H+P + NL L + N ++F + L LDLS+N QL P
Sbjct: 45 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH--- 101
Query: 453 FNLEYXXXXXXXXXXXXFSKKINLTKLKRLNLD--GNHFIGGIPESLSNCSSLQGLYISD 510
L +L L+LD G +G P ++LQ LY+ D
Sbjct: 102 ----------------------GLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQD 137
Query: 511 NDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAF 570
N + ++ L + + N + F L L+ L L +N +A + AF
Sbjct: 138 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH-AF 196
Query: 571 SKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANN 608
L+TL L N L+ + L L+YL L +N
Sbjct: 197 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 50/198 (25%), Positives = 84/198 (42%), Gaps = 33/198 (16%)
Query: 117 INIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRD-GSKVLHSIGS 175
I+ L+ LE LD+SDN V P + GL +L L L +++ G + +
Sbjct: 71 IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA- 129
Query: 176 FPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLP-WCLANLTSL----- 229
+L+ LYL+ N T +L +L L++ H + I S+P L SL
Sbjct: 130 --ALQYLYLQDNALQALPDDT--FRDLGNLTHLFL-HGNRISSVPERAFRGLHSLDRLLL 184
Query: 230 ---RVLHVPDNQLTE------------NLSSSP---LMHLTSIELLILSNNHFQIPMSLE 271
RV HV + + NLS+ P L L +++ L L++N +
Sbjct: 185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR 244
Query: 272 PFFNYSKLKIFHGRENQI 289
P + + L+ F G +++
Sbjct: 245 PLWAW--LQKFRGSSSEV 260
Score = 30.0 bits (66), Expect = 5.4, Method: Composition-based stats.
Identities = 53/218 (24%), Positives = 81/218 (37%), Gaps = 31/218 (14%)
Query: 394 HIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNN-QLTGEIPEHLAMGC 452
H+P + NL L + N ++F + L LDLS+N QL P
Sbjct: 46 HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFH--- 102
Query: 453 FNLEYXXXXXXXXXXXXFSKKINLTKLKRLNLD--GNHFIGGIPESLSNCSSLQGLYISD 510
L +L L+LD G +G P ++LQ LY+ D
Sbjct: 103 ----------------------GLGRLHTLHLDRCGLQELG--PGLFRGLAALQYLYLQD 138
Query: 511 NDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAF 570
N + ++ L + + N + F L L+ L L +N +A + AF
Sbjct: 139 NALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH-AF 197
Query: 571 SKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANN 608
L+TL L N L+ + L L+YL L +N
Sbjct: 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 46/105 (43%), Gaps = 4/105 (3%)
Query: 701 HGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG 760
H LDLS N I I + I + + L L+ N+LT +P NL + LDLS+N LT
Sbjct: 227 HALDLS-NLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS 284
Query: 761 KIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNP 805
+P L L F +N+ +P EGNP
Sbjct: 285 -LPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNP 327
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 77/196 (39%), Gaps = 36/196 (18%)
Query: 425 GDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXXXXFSKKINLTKLKRLNL 484
++ ++LD SNN LT + E+ +LT+L+ L L
Sbjct: 321 SKISPFLHLDFSNNLLTDTVFENCG-------------------------HLTELETLIL 355
Query: 485 DGNHF--IGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAII---MPDNHLEG 539
N + I E + SLQ L IS N +S G+ S+ +++ M N L
Sbjct: 356 QMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKK--GDCSWTKSLLSLNMSSNILTD 413
Query: 540 PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQ 599
I C +++LDL N I P K L L++ +N+L RL+
Sbjct: 414 TIFR--CLPPRIKVLDLHSNKIKSIP--KQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469
Query: 600 LRYLILANNNFEGEVP 615
L+ + L N ++ P
Sbjct: 470 LQKIWLHTNPWDCSCP 485
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 10/80 (12%)
Query: 13 QSVLCNATTSRVIAIDLLSLNIAS---ALYLNFSLFTPFQQLESLDLSGNNIAGCVENEG 69
Q+ + TS ++++ L + I S YL+ S+F Q+LE LDLS N + +
Sbjct: 30 QNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPT 89
Query: 70 LEKLSGLSNLKFLDLSHNSF 89
+ NLK LDLS N+F
Sbjct: 90 V-------NLKHLDLSFNAF 102
Score = 30.4 bits (67), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 8/119 (6%)
Query: 49 QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXXXXXXXX 108
Q+ L++S N I+ ++ L LS L+ L +SHN
Sbjct: 21 QKTTILNISQNYISELWTSDIL----SLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76
Query: 109 AYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS 167
++N+L + I ++ NL+ LD+S N D L + K++ + +L+FL LS + S
Sbjct: 77 SHNKL---VKISCHPTV-NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS 131
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 27/149 (18%)
Query: 397 VEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLE 456
+++ LP LG L +S N S+P + +L LD+S N+LT L +G
Sbjct: 70 LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-----LPLGALR-- 121
Query: 457 YXXXXXXXXXXXXFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGS 516
L +L+ L L GN P L+ L+ L +++ND++
Sbjct: 122 ------------------GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTEL 163
Query: 517 IPTWMGNISFLDAIIMPDNHLEGPIPSEF 545
+ + LD +++ +N L IP F
Sbjct: 164 PAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Query: 680 TIDFTTKE-RSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTI 738
T+D + + +S GQ L ++ LD+S N+L + L + L L N L
Sbjct: 81 TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 739 PVTFSNLRQVESLDLSYNNLTGKIPPRLVE-LNALAVFTVAHNNL----SGKIPERIAQF 793
P + ++E L L+ N+LT ++P L+ L L + N+L G + F
Sbjct: 141 PGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF 199
Query: 794 ATFDEDSYEGNPFLC 808
A GNP+LC
Sbjct: 200 AFL-----HGNPWLC 209
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 718 IGELIRIHTLNLSRNNL-TGTIPVTFSNLRQVESLDLSYN 756
IG+LI + LN++ N + + +P FSNL + +DLSYN
Sbjct: 124 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
Query: 718 IGELIRIHTLNLSRNNL-TGTIPVTFSNLRQVESLDLSYN 756
IG+LI + LN++ N + + +P FSNL + +DLSYN
Sbjct: 119 IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 158
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 18/187 (9%)
Query: 638 IPPCL--DNTSLHREE------GYYDLIPTYR------NEYDIVSYNVGPSMGEKETIDF 683
+PP L D T LH E L+P R + ++ V ++ T+D
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDL 84
Query: 684 TTKE-RSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTF 742
+ + +S GQ L ++ LD+S N+L + L + L L N L P
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 743 SNLRQVESLDLSYNNLTGKIPPRLVE-LNALAVFTVAHNNLSGKIPERIAQFATFDEDSY 801
+ ++E L L+ NNLT ++P L+ L L + N+L IP+
Sbjct: 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202
Query: 802 EGNPFLC 808
GNP+LC
Sbjct: 203 HGNPWLC 209
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 383 ALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQL 440
LD+S+N+LQ +P+ +G+ LP L L +SFN + + L L L N+L
Sbjct: 81 TLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 522 GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL 581
G + L + + N L+ +P L L +LD+S N + PL GA L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYL 131
Query: 582 CNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVP 615
N L P + +L L LANNN E+P
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELP 164
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 18/187 (9%)
Query: 638 IPPCL--DNTSLHREE------GYYDLIPTYR------NEYDIVSYNVGPSMGEKETIDF 683
+PP L D T LH E L+P R + ++ V ++ T+D
Sbjct: 26 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDL 85
Query: 684 TTKE-RSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTF 742
+ + +S GQ L ++ LD+S N+L + L + L L N L P
Sbjct: 86 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 145
Query: 743 SNLRQVESLDLSYNNLTGKIPPRLVE-LNALAVFTVAHNNLSGKIPERIAQFATFDEDSY 801
+ ++E L L+ NNLT ++P L+ L L + N+L IP+
Sbjct: 146 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 203
Query: 802 EGNPFLC 808
GNP+LC
Sbjct: 204 HGNPWLC 210
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 383 ALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQL 440
LD+S+N+LQ +P+ +G+ LP L L +SFN + + L L L N+L
Sbjct: 82 TLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 137
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 522 GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL 581
G + L + + N L+ +P L L +LD+S N + PL GA L L L
Sbjct: 75 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYL 132
Query: 582 CNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVP 615
N L P + +L L LANNN E+P
Sbjct: 133 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELP 165
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 18/187 (9%)
Query: 638 IPPCL--DNTSLHREE------GYYDLIPTYR------NEYDIVSYNVGPSMGEKETIDF 683
+PP L D T LH E L+P R + ++ V ++ T+D
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84
Query: 684 TTKE-RSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTF 742
+ + +S GQ L ++ LD+S N+L + L + L L N L P
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 743 SNLRQVESLDLSYNNLTGKIPPRLVE-LNALAVFTVAHNNLSGKIPERIAQFATFDEDSY 801
+ ++E L L+ NNLT ++P L+ L L + N+L IP+
Sbjct: 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202
Query: 802 EGNPFLC 808
GNP+LC
Sbjct: 203 HGNPWLC 209
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 383 ALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQL 440
LD+S+N+LQ +P+ +G+ LP L L +SFN + + L L L N+L
Sbjct: 81 TLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 522 GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL 581
G + L + + N L+ +P L L +LD+S N + PL GA L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYL 131
Query: 582 CNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVP 615
N L P + +L L LANNN E+P
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELP 164
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 18/187 (9%)
Query: 638 IPPCL--DNTSLHREE------GYYDLIPTYR------NEYDIVSYNVGPSMGEKETIDF 683
+PP L D T LH E L+P R + ++ V ++ T+D
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84
Query: 684 TTKE-RSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTF 742
+ + +S GQ L ++ LD+S N+L + L + L L N L P
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 743 SNLRQVESLDLSYNNLTGKIPPRLVE-LNALAVFTVAHNNLSGKIPERIAQFATFDEDSY 801
+ ++E L L+ NNLT ++P L+ L L + N+L IP+
Sbjct: 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202
Query: 802 EGNPFLC 808
GNP+LC
Sbjct: 203 HGNPWLC 209
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 383 ALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQL 440
LD+S+N+LQ +P+ +G+ LP L L +SFN + + L L L N+L
Sbjct: 81 TLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 522 GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL 581
G + L + + N L+ +P L L +LD+S N + PL GA L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYL 131
Query: 582 CNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVP 615
N L P + +L L LANNN E+P
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELP 164
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 18/187 (9%)
Query: 638 IPPCL--DNTSLHREE------GYYDLIPTYR------NEYDIVSYNVGPSMGEKETIDF 683
+PP L D T LH E L+P R + ++ V ++ T+D
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL 84
Query: 684 TTKE-RSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTF 742
+ + +S GQ L ++ LD+S N+L + L + L L N L P
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 743 SNLRQVESLDLSYNNLTGKIPPRLVE-LNALAVFTVAHNNLSGKIPERIAQFATFDEDSY 801
+ ++E L L+ NNLT ++P L+ L L + N+L IP+
Sbjct: 145 TPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202
Query: 802 EGNPFLC 808
GNP+LC
Sbjct: 203 HGNPWLC 209
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 2/58 (3%)
Query: 383 ALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQL 440
LD+S+N+LQ +P+ +G+ LP L L +SFN + + L L L N+L
Sbjct: 81 TLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL 136
Score = 29.6 bits (65), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 522 GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL 581
G + L + + N L+ +P L L +LD+S N + PL GA L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPL-GALRGLGELQELYL 131
Query: 582 CNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVP 615
N L P + +L L LANNN E+P
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELP 164
>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer
Arm Dynein Light Chain 1
Length = 199
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 10/116 (8%)
Query: 45 FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXXXX 104
+ + + L LS NNI E + LSG+ NL+ L L N
Sbjct: 45 LSTLKACKHLALSTNNI------EKISSLSGMENLRILSLGRN-LIKKIENLDAVADTLE 97
Query: 105 XXXXAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSG 160
+YN++ IE+ L NL L MS+N+I N L KL L L+G
Sbjct: 98 ELWISYNQIASLSGIEK---LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 150
>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light
Chain 1
Length = 198
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 34/116 (29%), Positives = 47/116 (40%), Gaps = 10/116 (8%)
Query: 45 FTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFXXXXXXXXXXXXXXX 104
+ + + L LS NNI E + LSG+ NL+ L L N
Sbjct: 44 LSTLKACKHLALSTNNI------EKISSLSGMENLRILSLGRN-LIKKIENLDAVADTLE 96
Query: 105 XXXXAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSG 160
+YN++ IE+ L NL L MS+N+I N L KL L L+G
Sbjct: 97 ELWISYNQIASLSGIEK---LVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAG 149
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 29/99 (29%)
Query: 383 ALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIP----SSFGDMNSLIY------ 432
LD+S+N+LQ +P+ +G+ LP L L +SFN S+P G++ L
Sbjct: 81 TLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Query: 433 ---------------LDLSNNQLTGEIPEHLAMGCFNLE 456
L L+NNQLT E+P L G NL+
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLD 175
Score = 29.6 bits (65), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 175 SFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHV 234
+ P+L L + N T L L LQELY+ N+ P L L L +
Sbjct: 98 TLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 235 PDNQLTENLSSSPLMHLTSIELLILSNNH-FQIP 267
+NQLTE L + L L +++ L+L N + IP
Sbjct: 156 ANNQLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
Score = 29.3 bits (64), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 7/138 (5%)
Query: 673 PSMGEKETIDFTTKE-RSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSR 731
P +G T+D + + +S GQ L ++ LD+S N+L + L + L L
Sbjct: 77 PVLG---TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKG 133
Query: 732 NNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVE-LNALAVFTVAHNNLSGKIPERI 790
N L P + ++E L L+ N LT ++P L+ L L + N+L IP+
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
Query: 791 AQFATFDEDSYEGNPFLC 808
GNP+LC
Sbjct: 192 FGSHLLPFAFLHGNPWLC 209
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 29/99 (29%)
Query: 383 ALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIP----SSFGDMNSLIY------ 432
LD+S+N+LQ +P+ +G+ LP L L +SFN S+P G++ L
Sbjct: 81 TLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Query: 433 ---------------LDLSNNQLTGEIPEHLAMGCFNLE 456
L L+NNQLT E+P L G NL+
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLD 175
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 175 SFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHV 234
+ P+L L + N T L L LQELY+ N+ P L L L +
Sbjct: 98 TLPALTVLDVSFNRL--TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 235 PDNQLTENLSSSPLMHLTSIELLILSNNH-FQIP 267
+NQLTE L + L L +++ L+L N + IP
Sbjct: 156 ANNQLTE-LPAGLLNGLENLDTLLLQENSLYTIP 188
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 84/176 (47%), Gaps = 18/176 (10%)
Query: 114 EGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSI 173
E +I+ ++ L+NLE L+++ N+I ++ L KL L + +I D + ++
Sbjct: 54 EKVASIQGIEYLTNLEYLNLNGNQITDI---SPLSNLVKLTNLYIGTNKITD----ISAL 106
Query: 174 GSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLH 233
+ +L+ LYL +N ++ L L L + N + L L+N T L L
Sbjct: 107 QNLTNLRELYLNEDN----ISDISPLANLTKXYSLNLGANHNLSDLS-PLSNXTGLNYLT 161
Query: 234 VPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQI 289
V ++++ + +P+ +LT +L LS N+ QI + P + + L F NQI
Sbjct: 162 VTESKVKD---VTPIANLT--DLYSLSLNYNQIE-DISPLASLTSLHYFTAYVNQI 211
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 29/99 (29%)
Query: 383 ALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIP----SSFGDMNSLIY------ 432
LD+S+N+LQ +P+ +G+ LP L L +SFN S+P G++ L
Sbjct: 81 TLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Query: 433 ---------------LDLSNNQLTGEIPEHLAMGCFNLE 456
L L+NNQLT E+P L G NL+
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLD 175
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 18/187 (9%)
Query: 638 IPPCL--DNTSLHREE------GYYDLIPTYR------NEYDIVSYNVGPSMGEKETIDF 683
+PP L D T LH E L+P R + ++ V ++ T+D
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDL 84
Query: 684 TTKE-RSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTF 742
+ + +S GQ L ++ LD+S N+L + L + L L N L P
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 743 SNLRQVESLDLSYNNLTGKIPPRLVE-LNALAVFTVAHNNLSGKIPERIAQFATFDEDSY 801
+ ++E L L+ N LT ++P L+ L L + N+L IP+
Sbjct: 145 TPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202
Query: 802 EGNPFLC 808
GNP+LC
Sbjct: 203 HGNPWLC 209
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 29/99 (29%)
Query: 383 ALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIP----SSFGDMNSLIY------ 432
LD+S+N+LQ +P+ +G+ LP L L +SFN S+P G++ L
Sbjct: 81 TLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK 137
Query: 433 ---------------LDLSNNQLTGEIPEHLAMGCFNLE 456
L L+NNQLT E+P L G NL+
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLD 175
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 18/187 (9%)
Query: 638 IPPCL--DNTSLHREE------GYYDLIPTYR------NEYDIVSYNVGPSMGEKETIDF 683
+PP L D T LH E L+P R + ++ V ++ T+D
Sbjct: 25 LPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPVLGTLDL 84
Query: 684 TTKE-RSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTF 742
+ + +S GQ L ++ LD+S N+L + L + L L N L P
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLL 144
Query: 743 SNLRQVESLDLSYNNLTGKIPPRLVE-LNALAVFTVAHNNLSGKIPERIAQFATFDEDSY 801
+ ++E L L+ N LT ++P L+ L L + N+L IP+
Sbjct: 145 TPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFL 202
Query: 802 EGNPFLC 808
GNP+LC
Sbjct: 203 HGNPWLC 209
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 50/127 (39%), Gaps = 6/127 (4%)
Query: 488 HFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQ 547
H G P S CS Q L N S+P G + + + +N + P F
Sbjct: 1 HHSAGCP---SQCSCDQTLVNCQNIRLASVPA--GIPTDKQRLWLNNNQITKLEPGVFDH 55
Query: 548 LDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILAN 607
L L+ L + N + P G F K + L LDL +N L L L ++ L N
Sbjct: 56 LVNLQQLYFNSNKLTAIP-TGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYN 114
Query: 608 NNFEGEV 614
N ++ E
Sbjct: 115 NPWDCEC 121
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 49/196 (25%), Positives = 66/196 (33%), Gaps = 46/196 (23%)
Query: 474 INLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDIS----------GSIPTWMGN 523
+ L LKRL N GG S + SL+ L +S N +S G+I +
Sbjct: 346 LKLKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLD 403
Query: 524 ISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR------------------- 564
+SF I M N F L+ LE LD +N+
Sbjct: 404 LSFNGVITMSSN---------FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 454
Query: 565 -----PLNGAFSKCSYLLTLDLCNNRLNGN-IPNWMGRLSQLRYLILANNNFEGEVPXXX 618
NG F+ S L L + N N +P+ L L +L L+ E P
Sbjct: 455 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 514
Query: 619 XXXXXXXXXXXSHNNF 634
SHNNF
Sbjct: 515 NSLSSLQVLNMSHNNF 530
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.0 bits (66), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 729 LSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPE 788
LS NL F LR V LDLS+N+LTG L L L + +A NN+ P
Sbjct: 482 LSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDALSHLKGLYL-NMASNNIRIIPPH 540
Query: 789 RIAQFATFDEDSYEGNPFLC 808
+ + + NP C
Sbjct: 541 LLPALSQQSIINLSHNPLDC 560
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 44/83 (53%), Gaps = 10/83 (12%)
Query: 718 IGELIRIHTLNLSRNNLTGTIPV--TFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVF 775
+GE I+I + + NNL T PV + +++ L+ YN L GK+P E+ LA
Sbjct: 303 VGEKIQI--IYIGYNNLK-TFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEI-KLASL 358
Query: 776 TVAHNNLSGKIPERIAQFATFDE 798
+A+N ++ +IP A F F E
Sbjct: 359 NLAYNQIT-EIP---ANFCGFTE 377
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 30.0 bits (66), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 25/131 (19%)
Query: 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443
LD+S+N L L NL L +S N N +F + +L YLDLS+N L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL-HT 102
Query: 444 IPEHLAMGCFNLEYXXXXXXXXXXXXFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSL 503
+ E L FS +L L+ L L NH + + + + L
Sbjct: 103 LDEFL---------------------FS---DLQALEVLLLYNNHIVVVDRNAFEDMAQL 138
Query: 504 QGLYISDNDIS 514
Q LY+S N IS
Sbjct: 139 QKLYLSQNQIS 149
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 85/196 (43%), Gaps = 12/196 (6%)
Query: 357 LRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAF 416
L+ + ++ N L +P +++ L I N+++ +P + L N+ + + N
Sbjct: 104 LQKLYISKNHL---VEIPPNLPSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPL 159
Query: 417 --NGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYXXXXXXXXXXXXFSKKI 474
+G P +F + L YL +S +LTG IP+ L L +
Sbjct: 160 ENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLPE---TLNELHLDHNKIQAIELEDLL 214
Query: 475 NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPD 534
+KL RL L N SLS +L+ L++ +N +S +P + ++ L + +
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273
Query: 535 NHLEGPIPSEFCQLDY 550
N++ ++FC + +
Sbjct: 274 NNITKVGVNDFCPVGF 289
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,315,433
Number of Sequences: 62578
Number of extensions: 1025850
Number of successful extensions: 3084
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 2138
Number of HSP's gapped (non-prelim): 548
length of query: 892
length of database: 14,973,337
effective HSP length: 107
effective length of query: 785
effective length of database: 8,277,491
effective search space: 6497830435
effective search space used: 6497830435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)