Query 044158
Match_columns 892
No_of_seqs 751 out of 5001
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 11:58:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044158.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044158hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 6.9E-67 1.5E-71 646.5 45.9 558 5-811 53-611 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.4E-58 9.6E-63 568.0 42.7 518 178-811 70-588 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.1E-38 6.7E-43 327.1 8.9 376 380-812 79-457 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.2E-37 6.9E-42 319.7 4.1 365 358-779 81-448 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 1.2E-39 2.5E-44 323.5 -14.3 338 378-783 182-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 5.7E-39 1.2E-43 318.7 -13.1 479 48-635 44-541 (565)
7 KOG0618 Serine/threonine phosp 100.0 4.5E-35 9.7E-40 320.4 -4.8 201 429-635 242-443 (1081)
8 KOG0618 Serine/threonine phosp 100.0 5E-35 1.1E-39 320.1 -5.5 487 50-632 22-510 (1081)
9 KOG0444 Cytoskeletal regulator 100.0 2.7E-34 5.8E-39 299.6 -3.7 365 330-759 7-375 (1255)
10 KOG0444 Cytoskeletal regulator 100.0 1.9E-33 4.1E-38 293.3 -1.8 326 351-739 51-379 (1255)
11 KOG4237 Extracellular matrix p 99.9 9.1E-27 2E-31 232.0 0.2 388 373-780 61-498 (498)
12 PLN03210 Resistant to P. syrin 99.9 1.3E-22 2.8E-27 251.2 26.5 342 346-757 549-904 (1153)
13 PLN03210 Resistant to P. syrin 99.9 1.8E-22 3.9E-27 249.9 27.0 341 372-781 551-904 (1153)
14 PRK15387 E3 ubiquitin-protein 99.9 2E-21 4.3E-26 222.0 17.2 40 748-788 424-463 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 3.4E-21 7.3E-26 220.2 17.8 65 699-768 403-467 (788)
16 KOG4237 Extracellular matrix p 99.9 1.5E-23 3.3E-28 209.2 -1.7 218 391-632 261-498 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 1.4E-19 3E-24 208.8 11.9 96 357-466 180-275 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 3.3E-19 7.2E-24 205.6 12.6 202 380-635 179-380 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 1.7E-19 3.7E-24 194.7 0.1 84 432-515 2-95 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 1.6E-18 3.5E-23 187.1 2.8 211 423-634 76-319 (319)
21 KOG0617 Ras suppressor protein 99.7 1.7E-18 3.7E-23 153.2 -5.0 166 475-646 31-196 (264)
22 KOG0617 Ras suppressor protein 99.6 6.8E-18 1.5E-22 149.4 -3.3 167 545-770 29-196 (264)
23 PLN03150 hypothetical protein; 99.6 1.7E-15 3.6E-20 175.1 12.3 119 699-817 419-538 (623)
24 PLN03150 hypothetical protein; 99.3 7.2E-12 1.6E-16 145.1 11.2 114 623-788 419-533 (623)
25 KOG0532 Leucine-rich repeat (L 99.3 1.1E-13 2.3E-18 145.7 -4.5 177 547-785 73-249 (722)
26 KOG0532 Leucine-rich repeat (L 99.3 1.2E-13 2.7E-18 145.3 -5.5 188 507-757 81-271 (722)
27 COG4886 Leucine-rich repeat (L 99.2 1.9E-11 4.1E-16 135.8 8.9 181 547-788 114-295 (394)
28 PF14580 LRR_9: Leucine-rich r 99.2 1.4E-11 3.1E-16 115.9 4.8 129 47-184 17-147 (175)
29 KOG3207 Beta-tubulin folding c 99.2 3.4E-12 7.3E-17 130.6 0.2 216 74-292 118-341 (505)
30 COG4886 Leucine-rich repeat (L 99.1 5.9E-11 1.3E-15 131.8 8.0 180 525-765 116-296 (394)
31 KOG3207 Beta-tubulin folding c 99.1 2.5E-11 5.5E-16 124.3 1.2 64 353-416 119-184 (505)
32 KOG1909 Ran GTPase-activating 99.0 1.5E-11 3.2E-16 122.7 -3.0 191 99-289 90-310 (382)
33 KOG1909 Ran GTPase-activating 99.0 1.4E-11 2.9E-16 123.0 -3.4 241 22-264 30-310 (382)
34 PF14580 LRR_9: Leucine-rich r 99.0 3.6E-10 7.9E-15 106.4 6.1 83 545-629 60-147 (175)
35 KOG1259 Nischarin, modulator o 99.0 1.6E-10 3.5E-15 112.3 2.3 60 573-635 283-342 (490)
36 KOG1259 Nischarin, modulator o 98.9 2.3E-10 5E-15 111.2 1.0 134 122-266 280-413 (490)
37 KOG0531 Protein phosphatase 1, 98.8 7.9E-10 1.7E-14 122.7 -0.3 225 497-787 91-322 (414)
38 KOG0531 Protein phosphatase 1, 98.8 7.7E-10 1.7E-14 122.8 -1.5 219 498-783 69-290 (414)
39 KOG4658 Apoptotic ATPase [Sign 98.8 6.5E-09 1.4E-13 123.0 6.2 87 73-162 567-653 (889)
40 PF13855 LRR_8: Leucine rich r 98.8 5.1E-09 1.1E-13 80.9 3.2 59 723-781 2-60 (61)
41 PF13855 LRR_8: Leucine rich r 98.7 8.9E-09 1.9E-13 79.6 3.7 60 699-758 2-61 (61)
42 KOG4658 Apoptotic ATPase [Sign 98.6 6.9E-08 1.5E-12 114.4 9.4 273 354-636 522-808 (889)
43 KOG2120 SCF ubiquitin ligase, 98.5 2.5E-09 5.3E-14 104.3 -6.9 16 174-189 257-272 (419)
44 KOG2982 Uncharacterized conser 98.4 2.8E-08 6E-13 97.1 -0.8 109 50-163 46-158 (418)
45 KOG4341 F-box protein containi 98.4 1E-08 2.2E-13 105.1 -4.8 237 49-287 138-382 (483)
46 KOG4579 Leucine-rich repeat (L 98.4 1.9E-08 4.2E-13 86.7 -3.5 85 700-787 79-163 (177)
47 KOG2120 SCF ubiquitin ligase, 98.4 2.9E-08 6.3E-13 97.0 -3.0 159 330-488 185-349 (419)
48 KOG1859 Leucine-rich repeat pr 98.3 1.5E-08 3.2E-13 110.5 -5.9 198 378-587 83-292 (1096)
49 KOG2982 Uncharacterized conser 98.3 8.1E-08 1.8E-12 93.9 -0.6 65 354-418 198-263 (418)
50 KOG1859 Leucine-rich repeat pr 98.3 2E-08 4.3E-13 109.4 -6.3 128 127-265 165-292 (1096)
51 COG5238 RNA1 Ran GTPase-activa 98.1 6.1E-07 1.3E-11 86.8 0.3 218 48-265 29-285 (388)
52 COG5238 RNA1 Ran GTPase-activa 98.1 3.7E-07 7.9E-12 88.3 -2.0 243 22-265 30-316 (388)
53 KOG1644 U2-associated snRNP A' 97.9 1.7E-05 3.8E-10 73.9 6.2 84 78-164 43-126 (233)
54 KOG4579 Leucine-rich repeat (L 97.9 7.2E-07 1.6E-11 77.2 -2.9 113 526-643 54-167 (177)
55 KOG4341 F-box protein containi 97.9 4.5E-07 9.8E-12 93.2 -5.0 110 399-508 341-459 (483)
56 PF12799 LRR_4: Leucine Rich r 97.8 2.1E-05 4.5E-10 55.3 3.1 36 723-759 2-37 (44)
57 KOG3665 ZYG-1-like serine/thre 97.8 5.6E-06 1.2E-10 95.8 0.2 16 226-241 249-264 (699)
58 PRK15386 type III secretion pr 97.8 8.1E-05 1.8E-09 79.2 8.6 76 545-634 48-124 (426)
59 KOG1644 U2-associated snRNP A' 97.8 5E-05 1.1E-09 70.9 6.0 130 24-163 21-152 (233)
60 PF12799 LRR_4: Leucine Rich r 97.7 2.6E-05 5.6E-10 54.9 2.9 37 746-783 1-37 (44)
61 PRK15386 type III secretion pr 97.6 0.00022 4.8E-09 76.0 9.3 54 403-463 51-104 (426)
62 KOG3665 ZYG-1-like serine/thre 97.6 3.7E-05 8.1E-10 89.1 3.3 155 76-234 121-282 (699)
63 PF13306 LRR_5: Leucine rich r 97.5 0.00019 4.2E-09 65.3 6.1 87 347-437 4-90 (129)
64 KOG2739 Leucine-rich acidic nu 97.4 5.6E-05 1.2E-09 73.9 1.9 89 97-186 61-152 (260)
65 PF13306 LRR_5: Leucine rich r 97.4 0.00024 5.2E-09 64.7 5.8 79 403-485 11-89 (129)
66 KOG2739 Leucine-rich acidic nu 97.2 0.00013 2.7E-09 71.5 1.7 106 47-158 41-150 (260)
67 KOG2123 Uncharacterized conser 96.8 5.2E-05 1.1E-09 74.1 -5.6 82 48-138 18-100 (388)
68 KOG2123 Uncharacterized conser 96.6 7.9E-05 1.7E-09 72.8 -5.5 84 74-162 16-99 (388)
69 KOG1947 Leucine rich repeat pr 96.6 0.00039 8.5E-09 79.8 -1.2 65 99-163 241-307 (482)
70 KOG1947 Leucine rich repeat pr 96.3 0.0008 1.7E-08 77.2 -0.5 36 576-611 403-440 (482)
71 PF08263 LRRNT_2: Leucine rich 95.7 0.0048 1E-07 43.3 1.2 17 1-18 26-43 (43)
72 PF00560 LRR_1: Leucine Rich R 95.5 0.0045 9.8E-08 36.0 0.3 12 724-735 2-13 (22)
73 PF00560 LRR_1: Leucine Rich R 95.3 0.0081 1.8E-07 35.0 1.1 19 748-767 2-20 (22)
74 KOG4308 LRR-containing protein 93.0 0.00078 1.7E-08 74.9 -12.1 186 79-265 89-303 (478)
75 PF13504 LRR_7: Leucine rich r 91.0 0.12 2.7E-06 27.7 1.1 11 748-758 3-13 (17)
76 KOG4308 LRR-containing protein 90.0 0.0042 9E-08 69.2 -10.5 190 51-241 89-304 (478)
77 KOG3864 Uncharacterized conser 89.1 0.049 1.1E-06 51.5 -2.5 83 78-161 102-186 (221)
78 KOG0473 Leucine-rich repeat pr 88.6 0.011 2.4E-07 56.7 -7.1 84 46-137 39-122 (326)
79 smart00370 LRR Leucine-rich re 87.5 0.56 1.2E-05 28.5 2.3 19 101-120 2-20 (26)
80 smart00369 LRR_TYP Leucine-ric 87.5 0.56 1.2E-05 28.5 2.3 19 101-120 2-20 (26)
81 KOG0473 Leucine-rich repeat pr 87.1 0.024 5.1E-07 54.6 -5.9 83 698-783 42-124 (326)
82 smart00370 LRR Leucine-rich re 87.0 0.63 1.4E-05 28.2 2.3 21 428-449 2-22 (26)
83 smart00369 LRR_TYP Leucine-ric 87.0 0.63 1.4E-05 28.2 2.3 21 428-449 2-22 (26)
84 KOG3864 Uncharacterized conser 83.5 0.23 5E-06 47.2 -1.1 81 527-607 103-185 (221)
85 PF13516 LRR_6: Leucine Rich r 82.2 0.23 5.1E-06 29.5 -1.1 13 747-759 3-15 (24)
86 smart00365 LRR_SD22 Leucine-ri 73.0 3 6.5E-05 25.4 1.8 14 746-759 2-15 (26)
87 smart00364 LRR_BAC Leucine-ric 68.8 3.5 7.5E-05 25.0 1.4 13 747-759 3-15 (26)
88 KOG4242 Predicted myosin-I-bin 65.1 34 0.00074 37.4 8.8 17 355-371 165-181 (553)
89 smart00368 LRR_RI Leucine rich 57.5 4.6 0.0001 25.0 0.6 13 78-90 3-15 (28)
90 TIGR00864 PCC polycystin catio 55.8 5.8 0.00013 52.8 1.5 36 752-787 1-36 (2740)
91 KOG3763 mRNA export factor TAP 41.6 12 0.00026 41.6 1.1 66 176-241 217-284 (585)
92 PF15102 TMEM154: TMEM154 prot 34.0 30 0.00066 31.3 2.2 28 842-869 59-87 (146)
93 PTZ00382 Variant-specific surf 29.2 26 0.00057 29.5 1.0 15 847-861 72-86 (96)
94 smart00367 LRR_CC Leucine-rich 28.4 42 0.00091 20.1 1.5 11 77-87 2-12 (26)
95 TIGR00864 PCC polycystin catio 25.7 40 0.00086 45.6 2.0 33 728-760 1-33 (2740)
96 KOG3763 mRNA export factor TAP 25.2 34 0.00073 38.3 1.2 64 200-266 215-284 (585)
97 PF08093 Toxin_23: Magi 5 toxi 22.1 55 0.0012 20.4 1.1 10 4-13 10-19 (30)
98 KOG4242 Predicted myosin-I-bin 21.2 1.9E+02 0.0041 32.1 5.6 68 378-448 164-234 (553)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=6.9e-67 Score=646.49 Aligned_cols=558 Identities=34% Similarity=0.523 Sum_probs=375.8
Q ss_pred CCCCCcccceeEecCCCCcEEEEEcCCCccccccccCcccCCCCCCCcEEeCCCCccCCccccccccccCCCCCCCEEeC
Q 044158 5 SYSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDL 84 (892)
Q Consensus 5 ~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~s~f~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~L 84 (892)
.++|||.|.||+|++ .++|+.|||+++.+.+. .+ ..|..+++|++|+|
T Consensus 53 ~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~---------------------------~~----~~~~~l~~L~~L~L 100 (968)
T PLN00113 53 SSADVCLWQGITCNN-SSRVVSIDLSGKNISGK---------------------------IS----SAIFRLPYIQTINL 100 (968)
T ss_pred CCCCCCcCcceecCC-CCcEEEEEecCCCcccc---------------------------CC----hHHhCCCCCCEEEC
Confidence 367899999999985 57899999886533321 11 22556666677777
Q ss_pred CCCCCCCccccccc-CCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcC
Q 044158 85 SHNSFNNSVLSSLA-GLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRI 163 (892)
Q Consensus 85 s~n~i~~~~~~~l~-~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i 163 (892)
++|.+++.+|..+. ++++|++|+|++|.+++.+|. +.+++|++|+|++|.+++.
T Consensus 101 s~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~---------------------- 155 (968)
T PLN00113 101 SNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGE---------------------- 155 (968)
T ss_pred CCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCccccc----------------------
Confidence 77666655555433 667777777777766655543 2345555555555555433
Q ss_pred CCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCccccccCCCCCcEEeCCCCCccccc
Q 044158 164 RDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENL 243 (892)
Q Consensus 164 ~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 243 (892)
.+..++.+++|++|++++|.+.+..+. .++++++|++|++++|.+.+.+|..++++++|+.|++++|.+.+.+
T Consensus 156 -----~p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 156 -----IPNDIGSFSSLKVLDLGGNVLVGKIPN--SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred -----CChHHhcCCCCCEEECccCcccccCCh--hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence 223333333444444444433333332 3444444555555555444444444444445555554444443322
Q ss_pred CCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCC
Q 044158 244 SSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIP 323 (892)
Q Consensus 244 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 323 (892)
+..+
T Consensus 229 -p~~l--------------------------------------------------------------------------- 232 (968)
T PLN00113 229 -PYEI--------------------------------------------------------------------------- 232 (968)
T ss_pred -ChhH---------------------------------------------------------------------------
Confidence 2222
Q ss_pred ccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcC
Q 044158 324 KFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL 403 (892)
Q Consensus 324 ~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l 403 (892)
+++++|++|++++|.+++..+..+..+++|++|++++|++.+.+|..+.. +
T Consensus 233 ----------------------------~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l 283 (968)
T PLN00113 233 ----------------------------GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-L 283 (968)
T ss_pred ----------------------------hcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh-c
Confidence 22333333333333333222223333444555555555555555544433 4
Q ss_pred CCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEe
Q 044158 404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLN 483 (892)
Q Consensus 404 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 483 (892)
++|++|++++|.+.+.+|..+.+++ +|+.|++++|.+.+..|..+..+++|+.|+
T Consensus 284 ~~L~~L~Ls~n~l~~~~p~~~~~l~-------------------------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 338 (968)
T PLN00113 284 QKLISLDLSDNSLSGEIPELVIQLQ-------------------------NLEILHLFSNNFTGKIPVALTSLPRLQVLQ 338 (968)
T ss_pred cCcCEEECcCCeeccCCChhHcCCC-------------------------CCcEEECCCCccCCcCChhHhcCCCCCEEE
Confidence 5555555555555544444444444 455555555555444555555566666666
Q ss_pred ecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCC
Q 044158 484 LDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 563 (892)
Q Consensus 484 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 563 (892)
+++|.+.+.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++++
T Consensus 339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~ 418 (968)
T PLN00113 339 LWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSG 418 (968)
T ss_pred CcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeee
Confidence 66666666666666666677777777777766666666666777777777777777777777777777777777777776
Q ss_pred CcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCcccc
Q 044158 564 RPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLD 643 (892)
Q Consensus 564 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~ 643 (892)
.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|+++|.+|..+.
T Consensus 419 -~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~ 496 (968)
T PLN00113 419 -ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLG 496 (968)
T ss_pred -ECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhh
Confidence 567777778888888888888888888777788888888888888888777755 458899999999999988887665
Q ss_pred CCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCC
Q 044158 644 NTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIR 723 (892)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 723 (892)
++ +.|+.|++++|.+++.+|..++.+++
T Consensus 497 ~l----------------------------------------------------~~L~~L~Ls~N~l~~~~p~~~~~l~~ 524 (968)
T PLN00113 497 SL----------------------------------------------------SELMQLKLSENKLSGEIPDELSSCKK 524 (968)
T ss_pred hh----------------------------------------------------hccCEEECcCCcceeeCChHHcCccC
Confidence 43 35888999999999999999999999
Q ss_pred CCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcccccC
Q 044158 724 IHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEG 803 (892)
Q Consensus 724 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~g 803 (892)
|++|+|++|.++|.+|..++++++|+.|||++|+++|.+|..+..+++|+.+++++|+++|.+|. .+++.++...++.|
T Consensus 525 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~-~~~~~~~~~~~~~~ 603 (968)
T PLN00113 525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS-TGAFLAINASAVAG 603 (968)
T ss_pred CCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC-cchhcccChhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999998 68888999999999
Q ss_pred CCCCCCCC
Q 044158 804 NPFLCGPP 811 (892)
Q Consensus 804 N~~lc~~~ 811 (892)
||.+||.+
T Consensus 604 n~~lc~~~ 611 (968)
T PLN00113 604 NIDLCGGD 611 (968)
T ss_pred CccccCCc
Confidence 99999864
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.4e-58 Score=568.01 Aligned_cols=518 Identities=31% Similarity=0.505 Sum_probs=444.1
Q ss_pred CCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCcccccc-CCCCCcEEeCCCCCcccccCCCcccccccCcE
Q 044158 178 SLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLA-NLTSLRVLHVPDNQLTENLSSSPLMHLTSIEL 256 (892)
Q Consensus 178 ~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~ 256 (892)
+++.|++++|.+.+..+. .+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+++.+ + .+.+++|++
T Consensus 70 ~v~~L~L~~~~i~~~~~~--~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~-p--~~~l~~L~~ 144 (968)
T PLN00113 70 RVVSIDLSGKNISGKISS--AIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI-P--RGSIPNLET 144 (968)
T ss_pred cEEEEEecCCCccccCCh--HHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccccc-C--ccccCCCCE
Confidence 455555555555554433 455555555555555555555544433 5555555555555555433 1 123444555
Q ss_pred EeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEE
Q 044158 257 LILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVI 336 (892)
Q Consensus 257 L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~ 336 (892)
|++++|.+.+ .+|..+..+++|++|+
T Consensus 145 L~Ls~n~~~~------------------------------------------------------~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 145 LDLSNNMLSG------------------------------------------------------EIPNDIGSFSSLKVLD 170 (968)
T ss_pred EECcCCcccc------------------------------------------------------cCChHHhcCCCCCEEE
Confidence 5555444332 3455556677788888
Q ss_pred ccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcC
Q 044158 337 ISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAF 416 (892)
Q Consensus 337 l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~ 416 (892)
+++|.+.+.+|.. ++++++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+.. +++|++|++++|.+
T Consensus 171 L~~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l 248 (968)
T PLN00113 171 LGGNVLVGKIPNS-LTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG-LTSLNHLDLVYNNL 248 (968)
T ss_pred CccCcccccCChh-hhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc-CCCCCEEECcCcee
Confidence 8888888888876 678999999999999998888888899999999999999999899988876 89999999999999
Q ss_pred CccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcc
Q 044158 417 NGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPES 496 (892)
Q Consensus 417 ~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 496 (892)
.+.+|..++++++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF-SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHh-hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh
Confidence 999999999999999999999999988888774 7899999999999999999999999999999999999999999999
Q ss_pred cccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCc
Q 044158 497 LSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYL 576 (892)
Q Consensus 497 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L 576 (892)
+..+++|+.|++++|.+.+.+|..++.+++|+.|++++|++++.+|..+..+++|+.|++++|++.+ .+|..+..+++|
T Consensus 328 ~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~-~~p~~~~~~~~L 406 (968)
T PLN00113 328 LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEG-EIPKSLGACRSL 406 (968)
T ss_pred HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecc-cCCHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 778899999999
Q ss_pred cEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccc
Q 044158 577 LTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDL 656 (892)
Q Consensus 577 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~ 656 (892)
+.|++++|++++.+|..+..+++|+.|++++|++++.+|..+..+++|+.|++++|++.|.+|..+.
T Consensus 407 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~------------- 473 (968)
T PLN00113 407 RRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG------------- 473 (968)
T ss_pred CEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccc-------------
Confidence 9999999999999999999999999999999999999999999999999999999999988876432
Q ss_pred ccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCc
Q 044158 657 IPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTG 736 (892)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 736 (892)
..+|+.||+++|++++.+|..+..+++|+.|+|++|++++
T Consensus 474 ----------------------------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 474 ----------------------------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513 (968)
T ss_pred ----------------------------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence 1258899999999999999999999999999999999999
Q ss_pred cccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcccccCCCCCCCCC
Q 044158 737 TIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPP 811 (892)
Q Consensus 737 ~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~ 811 (892)
.+|..++++++|++|+|++|+++|.+|..+..+++|+.||+++|+++|.+|..+..+..+...++.+|+..+..|
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p 588 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCC
Confidence 999999999999999999999999999999999999999999999999999988888888889999999876444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-38 Score=327.15 Aligned_cols=376 Identities=26% Similarity=0.270 Sum_probs=286.6
Q ss_pred CccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEE
Q 044158 380 NIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLL 459 (892)
Q Consensus 380 ~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~ 459 (892)
.-+.||+++|++. .+....+..+++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+ ++...-...++.|+.||
T Consensus 79 ~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 79 QTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD 155 (873)
T ss_pred ceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence 3456777777777 455455555777777777777776 56654444555777888877777 55555445677778888
Q ss_pred ccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccC
Q 044158 460 LSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEG 539 (892)
Q Consensus 460 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 539 (892)
|+.|.++.+....|..-.++++|+|++|+|+..-...|.++.+|.+|.|++|+++...+..|.++++|+.|+|..|++.-
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 88887777666666666778888888888877666777777888888888888887777777778888888888888764
Q ss_pred CCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcccc
Q 044158 540 PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLC 619 (892)
Q Consensus 540 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 619 (892)
.---.|.++++|+.|.|..|.+..+. .++|..+.++++|+|+.|++...-..|+.++++|+.|++|+|.|..+.++.+.
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~-DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLD-DGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCccccc-Ccceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 44556888888888888888887643 56788888888888888888877777888888888888888888877788888
Q ss_pred CCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCc
Q 044158 620 QLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLES 699 (892)
Q Consensus 620 ~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 699 (892)
.+++|++|||++|+++..-+..+. .+..
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~----------------------------------------------------~L~~ 342 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFR----------------------------------------------------VLSQ 342 (873)
T ss_pred hcccceeEeccccccccCChhHHH----------------------------------------------------HHHH
Confidence 888888888888888732222222 2346
Q ss_pred cceeeccCccccccCCccccccCCCCEEEccCccCCccccc---cccCCCCCCEEECCCCcCcccCCccccCCCCCCEEE
Q 044158 700 IHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPV---TFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFT 776 (892)
Q Consensus 700 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ 776 (892)
|+.|+|++|.+...--..|..+++|++|||++|.+++.|.+ .|..|++|+.|+|-+|+|..+-..+|.++..|+.||
T Consensus 343 Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 343 LEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD 422 (873)
T ss_pred hhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence 88888888888866666788888899999999988877764 377788999999999998865566888889999999
Q ss_pred ccCCcccccCCccccccCCCCcccccCCCCCCCCCC
Q 044158 777 VAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPL 812 (892)
Q Consensus 777 ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l 812 (892)
|.+|.+...-|+.+.++ .++...+..-.++|+|.+
T Consensus 423 L~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql 457 (873)
T KOG4194|consen 423 LGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQL 457 (873)
T ss_pred CCCCcceeecccccccc-hhhhhhhcccceEEeccH
Confidence 99998888777766666 666666666778898865
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.2e-37 Score=319.67 Aligned_cols=365 Identities=23% Similarity=0.229 Sum_probs=238.3
Q ss_pred CEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcC
Q 044158 358 RSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSN 437 (892)
Q Consensus 358 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 437 (892)
+.|++++|.+...-...|..+++|+.+++.+|.++ .||..... ...|+.|+|.+|.|+....+++..++.|+.||||.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~-sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE-SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc-ccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 45666666666555555566666666666666666 66654332 44567777777776666666666667777777777
Q ss_pred CcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCc
Q 044158 438 NQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSI 517 (892)
Q Consensus 438 n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 517 (892)
|.|+ ++|...|..-.++++|+|++|+|+..-.+.|..+.+|..|.|+.|+++...+..|.++++|+.|+|..|++.-.-
T Consensus 159 N~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive 237 (873)
T KOG4194|consen 159 NLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE 237 (873)
T ss_pred chhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh
Confidence 7766 666655555556777777777776666666666677777777777776555566666777777777777665333
Q ss_pred cccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcC
Q 044158 518 PTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRL 597 (892)
Q Consensus 518 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l 597 (892)
--.|..+++|+.|.|..|++...-...|..+.++++|+|+.|+++... .+++.++++|+.|+|++|.|..+-++.+.-+
T Consensus 238 ~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn-~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 238 GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN-EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh-cccccccchhhhhccchhhhheeecchhhhc
Confidence 445666777777777777776666666667777777777777766522 4456667777777777777766666666666
Q ss_pred CCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCC
Q 044158 598 SQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGE 677 (892)
Q Consensus 598 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (892)
++|++|+|++|+++...+..|..+..|+.|.|++|.++..--..|
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af----------------------------------- 361 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF----------------------------------- 361 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH-----------------------------------
Confidence 777777777777776666666667777777777776651000000
Q ss_pred cceeEeeecccccccCCCCcCccceeeccCccccccCCcc---ccccCCCCEEEccCccCCccccccccCCCCCCEEECC
Q 044158 678 KETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSR---IGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLS 754 (892)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs 754 (892)
..+.+|+.|||++|.+++.|-+. |..+++|+.|+|.+|++.......|.++.+||.|||-
T Consensus 362 -----------------~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~ 424 (873)
T KOG4194|consen 362 -----------------VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLG 424 (873)
T ss_pred -----------------HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCC
Confidence 12345667777777776655432 6667777777777777775555667777777777777
Q ss_pred CCcCcccCCccccCCCCCCEEEccC
Q 044158 755 YNNLTGKIPPRLVELNALAVFTVAH 779 (892)
Q Consensus 755 ~N~l~g~ip~~l~~l~~L~~l~ls~ 779 (892)
+|.|..+-|.+|..+ .|+.|-+..
T Consensus 425 ~NaiaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 425 DNAIASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred CCcceeecccccccc-hhhhhhhcc
Confidence 777777777777776 566665543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=1.2e-39 Score=323.54 Aligned_cols=338 Identities=28% Similarity=0.413 Sum_probs=219.0
Q ss_pred CCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcE
Q 044158 378 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 457 (892)
Q Consensus 378 ~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~ 457 (892)
++.|+++|...|-+. .+|.+++. +.+|..|++..|++. ..| .|.++..|++|+++.|++. .+|+.....+.++.+
T Consensus 182 m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~v 256 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLV 256 (565)
T ss_pred HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhccccccee
Confidence 344444444444444 56666654 566666666666665 344 5666666666666666665 666666556666666
Q ss_pred EEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCC---CcEEE---
Q 044158 458 LLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISF---LDAII--- 531 (892)
Q Consensus 458 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~---L~~L~--- 531 (892)
||+..|+++ ..|+.+.-+++|++||+++|.++ ..|..++++ +|+.|.+.+|.+.. +...+-+... |++|.
T Consensus 257 LDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrT-iRr~ii~~gT~~vLKyLrs~~ 332 (565)
T KOG0472|consen 257 LDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRT-IRREIISKGTQEVLKYLRSKI 332 (565)
T ss_pred eeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHH-HHHHHHcccHHHHHHHHHHhh
Confidence 666666666 34555666666666666666665 345556666 66666666666531 1111111100 00000
Q ss_pred ----CCCCc---------ccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCC--CccEEEccCCccCccCChhhhc
Q 044158 532 ----MPDNH---------LEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCS--YLLTLDLCNNRLNGNIPNWMGR 596 (892)
Q Consensus 532 ----L~~n~---------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~--~L~~L~L~~n~l~~~~p~~~~~ 596 (892)
++... ..+..| ......+.+.|++++-+++..+ .+.|.... -....++++|++. .+|..+..
T Consensus 333 ~~dglS~se~~~e~~~t~~~~~~~-~~~~~i~tkiL~~s~~qlt~VP-dEVfea~~~~~Vt~VnfskNqL~-elPk~L~~ 409 (565)
T KOG0472|consen 333 KDDGLSQSEGGTETAMTLPSESFP-DIYAIITTKILDVSDKQLTLVP-DEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVE 409 (565)
T ss_pred ccCCCCCCcccccccCCCCCCccc-chhhhhhhhhhcccccccccCC-HHHHHHhhhcceEEEecccchHh-hhhhhhHH
Confidence 00000 001111 2234556788888888887533 22333221 2678888899887 67877766
Q ss_pred CCCCCE-EecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCC
Q 044158 597 LSQLRY-LILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSM 675 (892)
Q Consensus 597 l~~L~~-L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (892)
+..+.+ +.+++|.+. .+|..++.+++|..|+|++|.+. .+|..++.+.
T Consensus 410 lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv----------------------------- 458 (565)
T KOG0472|consen 410 LKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLV----------------------------- 458 (565)
T ss_pred HHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhhhhhh-----------------------------
Confidence 666554 445555554 78888888899999999888875 6666554332
Q ss_pred CCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCC
Q 044158 676 GEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSY 755 (892)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~ 755 (892)
.|+.||+|+|.|. .+|..+..+..++.+-.++|++....|+.+.+|.+|..|||.+
T Consensus 459 -----------------------~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 459 -----------------------RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred -----------------------hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCC
Confidence 4888999999887 7888888888888888888999877777799999999999999
Q ss_pred CcCcccCCccccCCCCCCEEEccCCccc
Q 044158 756 NNLTGKIPPRLVELNALAVFTVAHNNLS 783 (892)
Q Consensus 756 N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 783 (892)
|.+. .||..++++++|++|++++|+++
T Consensus 515 Ndlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 515 NDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred Cchh-hCChhhccccceeEEEecCCccC
Confidence 9998 78889999999999999999997
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=5.7e-39 Score=318.65 Aligned_cols=479 Identities=24% Similarity=0.301 Sum_probs=325.7
Q ss_pred CCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCC
Q 044158 48 FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSN 127 (892)
Q Consensus 48 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~ 127 (892)
-.-|+.|++++|.+....+ .+.++..|++|++++|++. ..|++++.+..++.|+.++|.+. .+|. ++..+.+
T Consensus 44 qv~l~~lils~N~l~~l~~-----dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~ 115 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEVLRE-----DLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLIS 115 (565)
T ss_pred hcchhhhhhccCchhhccH-----hhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhh
Confidence 3456778888887765443 3677888888888888887 56788888888888888888887 6776 7888888
Q ss_pred CCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcE
Q 044158 128 LEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQE 207 (892)
Q Consensus 128 L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~ 207 (892)
|++|+.++|.+... +..++.+..|..++..+|++.. .|.++..+.+|..+++.+|++....+. .+ .++.|++
T Consensus 116 l~~l~~s~n~~~el--~~~i~~~~~l~dl~~~~N~i~s---lp~~~~~~~~l~~l~~~~n~l~~l~~~--~i-~m~~L~~ 187 (565)
T KOG0472|consen 116 LVKLDCSSNELKEL--PDSIGRLLDLEDLDATNNQISS---LPEDMVNLSKLSKLDLEGNKLKALPEN--HI-AMKRLKH 187 (565)
T ss_pred hhhhhccccceeec--CchHHHHhhhhhhhcccccccc---CchHHHHHHHHHHhhccccchhhCCHH--HH-HHHHHHh
Confidence 88888888888776 3447788888888888888876 566777777888888888877665554 23 3777777
Q ss_pred EEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCc
Q 044158 208 LYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGREN 287 (892)
Q Consensus 208 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~ 287 (892)
||...|.+. .+|..++.+.+|..|++..|++.. ...|..|..|++++++.|.+.
T Consensus 188 ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~---lPef~gcs~L~Elh~g~N~i~---------------------- 241 (565)
T KOG0472|consen 188 LDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF---LPEFPGCSLLKELHVGENQIE---------------------- 241 (565)
T ss_pred cccchhhhh-cCChhhcchhhhHHHHhhhccccc---CCCCCccHHHHHHHhcccHHH----------------------
Confidence 777777654 556667777777777777777753 225566666666666655443
Q ss_pred cccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcC
Q 044158 288 QIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSL 367 (892)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l 367 (892)
.+|+....+++++..|+++.|++
T Consensus 242 ---------------------------------------------------------~lpae~~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 242 ---------------------------------------------------------MLPAEHLKHLNSLLVLDLRDNKL 264 (565)
T ss_pred ---------------------------------------------------------hhHHHHhcccccceeeecccccc
Confidence 23333344455555555555554
Q ss_pred cCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCC---CcEE-------ECcC
Q 044158 368 SGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNS---LIYL-------DLSN 437 (892)
Q Consensus 368 ~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~---L~~L-------~L~~ 437 (892)
+. .|..+..+++|++||+++|.++ .+|..+++ + .|+.|.+.+|.+..+-. .+-+... |++| -++.
T Consensus 265 ke-~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn-l-hL~~L~leGNPlrTiRr-~ii~~gT~~vLKyLrs~~~~dglS~ 339 (565)
T KOG0472|consen 265 KE-VPDEICLLRSLERLDLSNNDIS-SLPYSLGN-L-HLKFLALEGNPLRTIRR-EIISKGTQEVLKYLRSKIKDDGLSQ 339 (565)
T ss_pred cc-CchHHHHhhhhhhhcccCCccc-cCCccccc-c-eeeehhhcCCchHHHHH-HHHcccHHHHHHHHHHhhccCCCCC
Confidence 42 2233334455556666666665 55555554 4 66666666665542111 1100000 0000 0000
Q ss_pred Cc----CccccchhHh---hcCccCcEEEccCCccccccccccccc--CCCcEEeecCccCcCCCCcccccCCCCcEEEc
Q 044158 438 NQ----LTGEIPEHLA---MGCFNLEYLLLSNNSLQGQLFSKKINL--TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYI 508 (892)
Q Consensus 438 n~----l~~~i~~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 508 (892)
.. -.+..+...| ....+.+.|+++.-+++....+.|..- .-....+++.|++. ++|..+..++.+.+.-+
T Consensus 340 se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~ 418 (565)
T KOG0472|consen 340 SEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLV 418 (565)
T ss_pred CcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHH
Confidence 00 0000011111 123456777777777775444444322 23678888888887 67777777766655444
Q ss_pred cCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCc
Q 044158 509 SDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNG 588 (892)
Q Consensus 509 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 588 (892)
..|+..+-+|..+..+++|..|+|++|-+. .+|..++.+..|+.|+++.|++. .+|..+..+..++.+-.++|++..
T Consensus 419 lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr--~lP~~~y~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 419 LSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR--MLPECLYELQTLETLLASNNQIGS 495 (565)
T ss_pred hhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc--cchHHHhhHHHHHHHHhccccccc
Confidence 444444478888899999999999999887 78889999999999999999987 457777777888888888899987
Q ss_pred cCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158 589 NIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635 (892)
Q Consensus 589 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 635 (892)
..|+.+.++.+|++|||.+|.+. .+|..++++.+|++|++++|+|+
T Consensus 496 vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred cChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence 77778999999999999999998 78999999999999999999997
No 7
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=4.5e-35 Score=320.40 Aligned_cols=201 Identities=26% Similarity=0.326 Sum_probs=101.0
Q ss_pred CCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEc
Q 044158 429 SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYI 508 (892)
Q Consensus 429 ~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L 508 (892)
+|+++++++|+++ .+|+++ ..+.+|+.++..+|.++ .+|..+...++|+.|.+..|.+. .+|.....+++|++|+|
T Consensus 242 nl~~~dis~n~l~-~lp~wi-~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWI-GACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred cceeeecchhhhh-cchHHH-HhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 4444444444444 444322 23444444444444442 33344444455555555555544 34444445555555555
Q ss_pred cCCcCCCCccccccCCCC-CcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccC
Q 044158 509 SDNDISGSIPTWMGNISF-LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN 587 (892)
Q Consensus 509 ~~n~l~~~~~~~~~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 587 (892)
..|++....+..+..... |+.+..+.|++.....-.=...+.|+.|++.+|.++. ...+.+.+.+.|+.|+|++|++.
T Consensus 318 ~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd-~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTD-SCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccc-cchhhhccccceeeeeecccccc
Confidence 555555332222222222 4444444444442211111123456666666666666 33335566666666666666665
Q ss_pred ccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158 588 GNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635 (892)
Q Consensus 588 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 635 (892)
......+.++..|+.|+||+|+++ .+|..+..++.|++|...+|++.
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence 322235566666666666666666 55666666666666655555554
No 8
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.98 E-value=5e-35 Score=320.06 Aligned_cols=487 Identities=24% Similarity=0.283 Sum_probs=328.2
Q ss_pred CCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCC
Q 044158 50 QLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLE 129 (892)
Q Consensus 50 ~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~ 129 (892)
.++.|+++.|.+-..+ ++...+.-+|+.||+++|.+. ..|..+..+++|+.|+++.|.+. .+|. ...++.+|+
T Consensus 22 ~~~~ln~~~N~~l~~p----l~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~-s~~~~~~l~ 94 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRP----LEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPS-SCSNMRNLQ 94 (1081)
T ss_pred HHHhhhccccccccCc----hHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCch-hhhhhhcch
Confidence 3777888877664433 234455556888888888776 45777888888888888888877 5664 777888888
Q ss_pred EEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEE
Q 044158 130 GLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELY 209 (892)
Q Consensus 130 ~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ 209 (892)
+|.|.+|.+... |..+..+++|++|+++.|.+.. +|..+..+..++.+..++|.... .++... ++.++
T Consensus 95 ~lnL~~n~l~~l--P~~~~~lknl~~LdlS~N~f~~---~Pl~i~~lt~~~~~~~s~N~~~~------~lg~~~-ik~~~ 162 (1081)
T KOG0618|consen 95 YLNLKNNRLQSL--PASISELKNLQYLDLSFNHFGP---IPLVIEVLTAEEELAASNNEKIQ------RLGQTS-IKKLD 162 (1081)
T ss_pred hheeccchhhcC--chhHHhhhcccccccchhccCC---CchhHHhhhHHHHHhhhcchhhh------hhcccc-chhhh
Confidence 888888877765 4457888888888888888765 56667777777777777772111 122222 77777
Q ss_pred ccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccc
Q 044158 210 IDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQI 289 (892)
Q Consensus 210 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~ 289 (892)
+..|.+.+.++..+..++. .|+|++|.+. ...+..+++|+.|....|++..- -..-++
T Consensus 163 l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~----~~dls~~~~l~~l~c~rn~ls~l-----~~~g~~----------- 220 (1081)
T KOG0618|consen 163 LRLNVLGGSFLIDIYNLTH--QLDLRYNEME----VLDLSNLANLEVLHCERNQLSEL-----EISGPS----------- 220 (1081)
T ss_pred hhhhhcccchhcchhhhhe--eeecccchhh----hhhhhhccchhhhhhhhcccceE-----EecCcc-----------
Confidence 7777777777766666666 6778777764 23456666777777666655410 011222
Q ss_pred cccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcC
Q 044158 290 FGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSG 369 (892)
Q Consensus 290 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~ 369 (892)
++.|+...|.+....+.. ...+|++++++.|.+++
T Consensus 221 ------------------------------------------l~~L~a~~n~l~~~~~~p---~p~nl~~~dis~n~l~~ 255 (1081)
T KOG0618|consen 221 ------------------------------------------LTALYADHNPLTTLDVHP---VPLNLQYLDISHNNLSN 255 (1081)
T ss_pred ------------------------------------------hheeeeccCcceeecccc---ccccceeeecchhhhhc
Confidence 333333333333222111 23345666666666655
Q ss_pred CCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHh
Q 044158 370 PFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLA 449 (892)
Q Consensus 370 ~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~ 449 (892)
.. .....+.+|+.++..+|+++ .+|..++. ..+|+.|.+..|.+. -+|...+.++.|++|+|..|++. .+|+.++
T Consensus 256 lp-~wi~~~~nle~l~~n~N~l~-~lp~ri~~-~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l 330 (1081)
T KOG0618|consen 256 LP-EWIGACANLEALNANHNRLV-ALPLRISR-ITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFL 330 (1081)
T ss_pred ch-HHHHhcccceEecccchhHH-hhHHHHhh-hhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHH
Confidence 43 55556667777777777775 77777776 678888888888876 55666777888888888888887 7777666
Q ss_pred hcCcc-CcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCc
Q 044158 450 MGCFN-LEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLD 528 (892)
Q Consensus 450 ~~~~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 528 (892)
.-... |..|+.+.|++.......=...+.|+.|++.+|.++...-+.+.+.++|+.|+|++|++.......+.+++.|+
T Consensus 331 ~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~Le 410 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELE 410 (1081)
T ss_pred hhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhH
Confidence 54443 67777777777644322223456788888888888777666777788888888888888765556777888888
Q ss_pred EEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccC-ChhhhcCCCCCEEeccc
Q 044158 529 AIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNI-PNWMGRLSQLRYLILAN 607 (892)
Q Consensus 529 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~ 607 (892)
.|+|++|+++ .+|..+.++..|++|...+|++.. +| .+..++.|+.+|++.|+++... |.... -++|++||+++
T Consensus 411 eL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~--fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSG 485 (1081)
T KOG0618|consen 411 ELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS--FP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSG 485 (1081)
T ss_pred HHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee--ch-hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccC
Confidence 8888888887 567778888888888888888874 34 6777888888888888877442 32222 26888888888
Q ss_pred ccccccCCccccCCCCCCEEEcCCC
Q 044158 608 NNFEGEVPLRLCQLQKLRLLDLSHN 632 (892)
Q Consensus 608 n~l~~~~~~~~~~l~~L~~L~Ls~N 632 (892)
|.-....-..+..++.+...++.-|
T Consensus 486 N~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 486 NTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred CcccccchhhhHHhhhhhheecccC
Confidence 8754344455666666666666655
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.7e-34 Score=299.56 Aligned_cols=365 Identities=26% Similarity=0.337 Sum_probs=209.3
Q ss_pred CCccEEEccCCcCc-cccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcE
Q 044158 330 HHLEFVIISDVNMR-GEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGF 408 (892)
Q Consensus 330 ~~L~~L~l~~~~~~-~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~ 408 (892)
+-.+-.++++|.+. +.+|.. ...++.++.|.|....+.. .|..++.+.+|++|.+++|++. .+..++.. +|.|+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~-v~qMt~~~WLkLnrt~L~~-vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~-Lp~LRs 82 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHD-VEQMTQMTWLKLNRTKLEQ-VPEELSRLQKLEHLSMAHNQLI-SVHGELSD-LPRLRS 82 (1255)
T ss_pred ceeecccccCCcCCCCcCchh-HHHhhheeEEEechhhhhh-ChHHHHHHhhhhhhhhhhhhhH-hhhhhhcc-chhhHH
Confidence 34455677777777 456655 4566777777776666552 3445556666666666666665 44444433 566666
Q ss_pred EECcCCcCCc-cCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCc
Q 044158 409 LTISFNAFNG-SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGN 487 (892)
Q Consensus 409 L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 487 (892)
+.+..|++.. -+|..+..+..|+.||||+|++. ++|..+ ....++-+|+||+|+|..+.-..|.+++.|-.|||++|
T Consensus 83 v~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~L-E~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 83 VIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNL-EYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HhhhccccccCCCCchhcccccceeeecchhhhh-hcchhh-hhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 6666666542 34555556666666666666666 666655 34556666666666666555555566666666666666
Q ss_pred cCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCccc-CCCcccccCCCCCcEEeCCCCccCCCcc
Q 044158 488 HFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLE-GPIPSEFCQLDYLEILDLSKNNIAGRPL 566 (892)
Q Consensus 488 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 566 (892)
++. .+|+.+..+..|++|+|++|.+...-...+..+++|++|.+++.+=+ ..+|.++..+.+|..+|+|.|.+. ..
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp--~v 237 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP--IV 237 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC--cc
Confidence 655 44555666666666666666655333333444555556666554321 245555556666666666666655 34
Q ss_pred cccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC-CCCCccccCC
Q 044158 567 NGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS-GQIPPCLDNT 645 (892)
Q Consensus 567 ~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-g~~p~~~~~~ 645 (892)
|+.+.++++|+.|+|++|+++ .+.-..+...+|++|++|.|+++ .+|+.+++++.|+.|.+.+|+++ .-||+.++.
T Consensus 238 Pecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK- 314 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK- 314 (1255)
T ss_pred hHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhh-
Confidence 555556666666666666655 23333344455666666666665 55666666666666666666554 123333322
Q ss_pred cccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCC
Q 044158 646 SLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIH 725 (892)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 725 (892)
+..|+.+..++|.+. ..|+.+..+..|+
T Consensus 315 ---------------------------------------------------L~~Levf~aanN~LE-lVPEglcRC~kL~ 342 (1255)
T KOG0444|consen 315 ---------------------------------------------------LIQLEVFHAANNKLE-LVPEGLCRCVKLQ 342 (1255)
T ss_pred ---------------------------------------------------hhhhHHHHhhccccc-cCchhhhhhHHHH
Confidence 223555555555554 5555566666666
Q ss_pred EEEccCccCCccccccccCCCCCCEEECCCCcCc
Q 044158 726 TLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT 759 (892)
Q Consensus 726 ~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 759 (892)
.|.|++|++. ..|+.+.-++.|+.||+..|.--
T Consensus 343 kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 343 KLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred Hhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 6666666655 45556666666666666655443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.9e-33 Score=293.29 Aligned_cols=326 Identities=26% Similarity=0.356 Sum_probs=271.2
Q ss_pred hhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCC-CCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCC
Q 044158 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQ-GHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNS 429 (892)
Q Consensus 351 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~-~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 429 (892)
++.+.+|++|.+.+|++... ...++.++.|+.+++..|++. ..||.++|. +..|..|||++|++. ..|..+..-++
T Consensus 51 L~~lqkLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~-l~dLt~lDLShNqL~-EvP~~LE~AKn 127 (1255)
T KOG0444|consen 51 LSRLQKLEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDIFR-LKDLTILDLSHNQLR-EVPTNLEYAKN 127 (1255)
T ss_pred HHHHhhhhhhhhhhhhhHhh-hhhhccchhhHHHhhhccccccCCCCchhcc-cccceeeecchhhhh-hcchhhhhhcC
Confidence 44555555555555555432 233455666777777777664 258999998 899999999999998 68888999999
Q ss_pred CcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEcc
Q 044158 430 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYIS 509 (892)
Q Consensus 430 L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 509 (892)
+-.|+||+|+|. .||..+|.+++.|-.||||+|++. .+|+....+..|++|+|++|++.-.--..+..+++|++|.++
T Consensus 128 ~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms 205 (1255)
T KOG0444|consen 128 SIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS 205 (1255)
T ss_pred cEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence 999999999998 999999999999999999999998 567788899999999999999864434556678889999999
Q ss_pred CCcCC-CCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCc
Q 044158 510 DNDIS-GSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNG 588 (892)
Q Consensus 510 ~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 588 (892)
+.+-+ ..+|..+..+.+|..++++.|.+. ..|+.+.++++|++|+||+|+|+.+. .......+|++|+++.|+++
T Consensus 206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~--~~~~~W~~lEtLNlSrNQLt- 281 (1255)
T KOG0444|consen 206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELN--MTEGEWENLETLNLSRNQLT- 281 (1255)
T ss_pred cccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeee--ccHHHHhhhhhhccccchhc-
Confidence 87655 568999999999999999999998 78999999999999999999998644 34455679999999999998
Q ss_pred cCChhhhcCCCCCEEecccccccc-cCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccc
Q 044158 589 NIPNWMGRLSQLRYLILANNNFEG-EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIV 667 (892)
Q Consensus 589 ~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (892)
.+|+.+..++.|+.|.+.+|+++- -+|..++++..|+.+..++|.+. .+|+.++.+.
T Consensus 282 ~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~--------------------- 339 (1255)
T KOG0444|consen 282 VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCV--------------------- 339 (1255)
T ss_pred cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhH---------------------
Confidence 899999999999999999998762 37999999999999999999986 6777665443
Q ss_pred cccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCcccc
Q 044158 668 SYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIP 739 (892)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 739 (892)
.|+.|.|++|.+. .+|+.+.-++.|+.|||..|.---..|
T Consensus 340 -------------------------------kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 340 -------------------------------KLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred -------------------------------HHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence 5888999999998 799999999999999999996442444
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.92 E-value=9.1e-27 Score=232.03 Aligned_cols=388 Identities=24% Similarity=0.286 Sum_probs=266.4
Q ss_pred CCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcC-CcCccccchhHhhc
Q 044158 373 LPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSN-NQLTGEIPEHLAMG 451 (892)
Q Consensus 373 ~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~-n~l~~~i~~~~~~~ 451 (892)
.+-.-.+..+.++|..|+|+ .||...|+.+++|+.|||++|+|+.+.|.+|.++++|..|-+.+ |+|+ .+|...|.+
T Consensus 61 VP~~LP~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~g 138 (498)
T KOG4237|consen 61 VPANLPPETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGG 138 (498)
T ss_pred CcccCCCcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhh
Confidence 33334456788999999998 89999999999999999999999999999999999988887766 8998 999999999
Q ss_pred CccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCC------------CCccc
Q 044158 452 CFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDIS------------GSIPT 519 (892)
Q Consensus 452 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~------------~~~~~ 519 (892)
+..|+.|.+.-|++.....+.|..+++|..|.+++|.+.......|..+.+++.+.+..|.+. ...|.
T Consensus 139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~i 218 (498)
T KOG4237|consen 139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPI 218 (498)
T ss_pred HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchh
Confidence 999999999999999999999999999999999999988554458888999999988887731 11111
Q ss_pred cccCCC-------------------------CCcEEECCCCcccCCCc-ccccCCCCCcEEeCCCCccCCCcccccccCC
Q 044158 520 WMGNIS-------------------------FLDAIIMPDNHLEGPIP-SEFCQLDYLEILDLSKNNIAGRPLNGAFSKC 573 (892)
Q Consensus 520 ~~~~~~-------------------------~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 573 (892)
.++... .+..-..+.+...+..| ..|..+++|++|+|++|+++++. +.+|.+.
T Consensus 219 etsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~-~~aFe~~ 297 (498)
T KOG4237|consen 219 ETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIE-DGAFEGA 297 (498)
T ss_pred hcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhh-hhhhcch
Confidence 121111 11111122233333333 35888999999999999999844 7899999
Q ss_pred CCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCC-----ccccCCccc
Q 044158 574 SYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIP-----PCLDNTSLH 648 (892)
Q Consensus 574 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p-----~~~~~~~~~ 648 (892)
..+++|.|..|++...-...|.++..|+.|+|.+|+|+..-|..|..+.+|..|.+-.|++-..-- +|+..-...
T Consensus 298 a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~ 377 (498)
T KOG4237|consen 298 AELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVV 377 (498)
T ss_pred hhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCC
Confidence 999999999999987767788999999999999999998889999999999999999888752110 011100000
Q ss_pred cc-----ccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccc-eeeccCccccccCCccccccC
Q 044158 649 RE-----EGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIH-GLDLSCNKLIGEIPSRIGELI 722 (892)
Q Consensus 649 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~ 722 (892)
.. ..+...++..+..+.-.... ++ +...... ...-....+.+. ....|+..+. .+|..+..
T Consensus 378 ~~~~Cq~p~~~~~~~~~dv~~~~~~c~-~~-----ee~~~~~----s~~cP~~c~c~~tVvRcSnk~lk-~lp~~iP~-- 444 (498)
T KOG4237|consen 378 GNPRCQSPGFVRQIPISDVAFGDFRCG-GP-----EELGCLT----SSPCPPPCTCLDTVVRCSNKLLK-LLPRGIPV-- 444 (498)
T ss_pred CCCCCCCCchhccccchhccccccccC-Cc-----cccCCCC----CCCCCCCcchhhhhHhhcccchh-hcCCCCCc--
Confidence 00 00000000000000000000 00 0000000 000001122222 3445555554 55554432
Q ss_pred CCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCC
Q 044158 723 RIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHN 780 (892)
Q Consensus 723 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N 780 (892)
..++|++.+|.++ .+|.+ .+.+| .+|+|+|+++..--..|.++++|.+|-+|+|
T Consensus 445 d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 445 DVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred hhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 4567888888888 66666 56777 7888888888666677888888888888876
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.3e-22 Score=251.19 Aligned_cols=342 Identities=22% Similarity=0.211 Sum_probs=237.7
Q ss_pred cchhhhhcCCCCCEEEccCCcCc------CCCCCCCCCC-CCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCc
Q 044158 346 FPSWLLENNTNLRSIILANNSLS------GPFRLPTRSR-KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNG 418 (892)
Q Consensus 346 ~p~~~~~~~~~L~~L~L~~n~l~------~~~~~~~~~~-~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~ 418 (892)
+....|..+++|+.|.+..+... ...+..+..+ .+|+.|++.++.+. .+|..+. +.+|+.|++.+|.+.
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f~--~~~L~~L~L~~s~l~- 624 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNFR--PENLVKLQMQGSKLE- 624 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcCC--ccCCcEEECcCcccc-
Confidence 33444778888888888655322 1223334333 46888888888776 7776652 678888888888876
Q ss_pred cCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccc
Q 044158 419 SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLS 498 (892)
Q Consensus 419 ~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 498 (892)
.+|..+..+++|+.|+++++...+.+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i- 701 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI- 701 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-
Confidence 4666677788888888887754447775 3457888888888887666777888888888888888877666777655
Q ss_pred cCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCC-----c-ccccccC
Q 044158 499 NCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR-----P-LNGAFSK 572 (892)
Q Consensus 499 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-----~-~~~~~~~ 572 (892)
++++|+.|++++|...+.+|.. .++|+.|++++|.+. .+|..+ .+++|++|++.++....+ . .+..+..
T Consensus 702 ~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~ 776 (1153)
T PLN03210 702 NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTML 776 (1153)
T ss_pred CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhc
Confidence 6788888888888665555542 356788888888876 455544 567777777776432110 0 1112233
Q ss_pred CCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccc
Q 044158 573 CSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEG 652 (892)
Q Consensus 573 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~ 652 (892)
+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|..+ .+++|+.|++++|.....+|..
T Consensus 777 ~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~----------- 844 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI----------- 844 (1153)
T ss_pred cccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc-----------
Confidence 5678888888887777788888888888888888876555667655 6778888888877544333321
Q ss_pred ccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCc
Q 044158 653 YYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRN 732 (892)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 732 (892)
.++++.|+|++|.++ .+|..+..+++|+.|+|++|
T Consensus 845 --------------------------------------------~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 845 --------------------------------------------STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGC 879 (1153)
T ss_pred --------------------------------------------ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCC
Confidence 124777888888887 57888888888888888874
Q ss_pred -cCCccccccccCCCCCCEEECCCCc
Q 044158 733 -NLTGTIPVTFSNLRQVESLDLSYNN 757 (892)
Q Consensus 733 -~l~~~~p~~~~~l~~L~~LdLs~N~ 757 (892)
+++ .+|..+..+++|+.+++++|.
T Consensus 880 ~~L~-~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 880 NNLQ-RVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCcC-ccCcccccccCCCeeecCCCc
Confidence 454 577777888888888888774
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=1.8e-22 Score=249.93 Aligned_cols=341 Identities=20% Similarity=0.257 Sum_probs=266.0
Q ss_pred CCCCCCCCCccEEEccCCc------CCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccc
Q 044158 372 RLPTRSRKNIIALDISYNK------LQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIP 445 (892)
Q Consensus 372 ~~~~~~~~~L~~L~l~~n~------l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~ 445 (892)
...|..+++|+.|.+..+. +...+|..+....++|+.|++.++.+. .+|..| ...+|++|++.+|++. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 3456778999999987654 233466666554467999999999886 567666 5689999999999987 777
Q ss_pred hhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCC
Q 044158 446 EHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNIS 525 (892)
Q Consensus 446 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 525 (892)
..+ ..+++|+.|+++++.....+| .+..+++|+.|++++|.....+|..+.++++|+.|++++|...+.+|..+ +++
T Consensus 628 ~~~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~ 704 (1153)
T PLN03210 628 DGV-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLK 704 (1153)
T ss_pred ccc-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCC
Confidence 665 478999999999886555666 47789999999999998888899999999999999999987666777765 789
Q ss_pred CCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccC-------ccCChhhhcCC
Q 044158 526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN-------GNIPNWMGRLS 598 (892)
Q Consensus 526 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~-------~~~p~~~~~l~ 598 (892)
+|+.|++++|...+.+|.. ..+|++|++++|.+.. +|..+ .+++|++|++.++... ...+......+
T Consensus 705 sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~--lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 705 SLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE--FPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc--ccccc-cccccccccccccchhhccccccccchhhhhccc
Confidence 9999999999766666643 4578999999999875 34433 5788888888875321 11222333457
Q ss_pred CCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCc
Q 044158 599 QLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEK 678 (892)
Q Consensus 599 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (892)
+|+.|++++|...+.+|..++++++|+.|++++|+..+.+|..+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~------------------------------------ 822 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI------------------------------------ 822 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC------------------------------------
Confidence 89999999998888899999999999999999987655666432
Q ss_pred ceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcC
Q 044158 679 ETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNL 758 (892)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 758 (892)
.+++|+.|++++|.....+|.. ..+|+.|+|++|.++ .+|.++..+++|+.|+|++|+-
T Consensus 823 -----------------~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~ 881 (1153)
T PLN03210 823 -----------------NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNN 881 (1153)
T ss_pred -----------------CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCC
Confidence 1346888999987665566653 357899999999998 6888999999999999998543
Q ss_pred cccCCccccCCCCCCEEEccCCc
Q 044158 759 TGKIPPRLVELNALAVFTVAHNN 781 (892)
Q Consensus 759 ~g~ip~~l~~l~~L~~l~ls~N~ 781 (892)
-..+|..+..++.|+.++++++.
T Consensus 882 L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 882 LQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCccCcccccccCCCeeecCCCc
Confidence 33688888899999999999874
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=2e-21 Score=222.02 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=18.9
Q ss_pred CCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCc
Q 044158 748 VESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPE 788 (892)
Q Consensus 748 L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 788 (892)
|+.|++++|+|+ .+|..+.+++.|+.+++++|+|+|.+|.
T Consensus 424 L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 424 LLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred hhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 344444444444 3444444444444444444444444443
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.86 E-value=3.4e-21 Score=220.18 Aligned_cols=65 Identities=26% Similarity=0.368 Sum_probs=44.1
Q ss_pred ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccC
Q 044158 699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVE 768 (892)
Q Consensus 699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~ 768 (892)
.|+.|++++|.+++ +|... .+|+.|++++|+|+ .+|..+.++++|+.|+|++|+|+|.+|..+..
T Consensus 403 ~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred CCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 35567777777763 55432 34666777777777 56777777777777777777777777766544
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=1.5e-23 Score=209.20 Aligned_cols=218 Identities=25% Similarity=0.218 Sum_probs=142.6
Q ss_pred CCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCccccccc
Q 044158 391 LQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLF 470 (892)
Q Consensus 391 l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~ 470 (892)
..+.-|...|+.+++|++|++++|+++++.+.+|.+...+++|.|..|++. .+....|.++..|+.|+|.+|+|+...|
T Consensus 261 ~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~-~v~~~~f~~ls~L~tL~L~~N~it~~~~ 339 (498)
T KOG4237|consen 261 PDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLE-FVSSGMFQGLSGLKTLSLYDNQITTVAP 339 (498)
T ss_pred cCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHH-HHHHHhhhccccceeeeecCCeeEEEec
Confidence 444678888888999999999999999999999999999999999999998 8888999999999999999999999999
Q ss_pred ccccccCCCcEEeecCccCcCCC-----Cccc-----------ccCCCCcEEEccCCcCCCC---ccccccCCCCCcEEE
Q 044158 471 SKKINLTKLKRLNLDGNHFIGGI-----PESL-----------SNCSSLQGLYISDNDISGS---IPTWMGNISFLDAII 531 (892)
Q Consensus 471 ~~~~~l~~L~~L~L~~n~~~~~~-----~~~~-----------~~l~~L~~L~L~~n~l~~~---~~~~~~~~~~L~~L~ 531 (892)
..|..+..|.+|++-.|.+.-.- .+++ .+-..++.+.+++..+... .|+..+-
T Consensus 340 ~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~-------- 411 (498)
T KOG4237|consen 340 GAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGC-------- 411 (498)
T ss_pred ccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCC--------
Confidence 99999999999999888763110 0111 1112344444544433211 1111000
Q ss_pred CCCCcccCCCcccccCCCCCcEE-eCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccc
Q 044158 532 MPDNHLEGPIPSEFCQLDYLEIL-DLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNF 610 (892)
Q Consensus 532 L~~n~l~~~~~~~~~~l~~L~~L-~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 610 (892)
.-++.-| ..++-+.++ ..|+..++ .+|..+ ...-.++.+.+|.++ .+|.. .+.+| .+++++|++
T Consensus 412 ----~~s~~cP---~~c~c~~tVvRcSnk~lk--~lp~~i--P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i 476 (498)
T KOG4237|consen 412 ----LTSSPCP---PPCTCLDTVVRCSNKLLK--LLPRGI--PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRI 476 (498)
T ss_pred ----CCCCCCC---CCcchhhhhHhhcccchh--hcCCCC--CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCce
Confidence 0000001 122223222 22222332 222221 134567777777777 55554 44566 778888887
Q ss_pred cccCCccccCCCCCCEEEcCCC
Q 044158 611 EGEVPLRLCQLQKLRLLDLSHN 632 (892)
Q Consensus 611 ~~~~~~~~~~l~~L~~L~Ls~N 632 (892)
...--..|.++..|.+|-|+.|
T Consensus 477 ~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 477 SSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred ehhhcccccchhhhheeEEecC
Confidence 7555566777777777777765
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.80 E-value=1.4e-19 Score=208.81 Aligned_cols=96 Identities=26% Similarity=0.335 Sum_probs=42.2
Q ss_pred CCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECc
Q 044158 357 LRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLS 436 (892)
Q Consensus 357 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 436 (892)
...|+++++.++... ..+ .+.++.|++++|+++ .+|..++ ++|++|++++|+++ .+|..+. ++|+.|+++
T Consensus 180 ~~~L~L~~~~LtsLP-~~I--p~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 180 KTELRLKILGLTTIP-ACI--PEQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELS 249 (754)
T ss_pred ceEEEeCCCCcCcCC-ccc--ccCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECc
Confidence 445555555554321 111 234555555555555 4444332 34555555555544 2333222 244555555
Q ss_pred CCcCccccchhHhhcCccCcEEEccCCccc
Q 044158 437 NNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ 466 (892)
Q Consensus 437 ~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~ 466 (892)
+|++. .+|..+. .+|+.|++++|+++
T Consensus 250 ~N~L~-~LP~~l~---s~L~~L~Ls~N~L~ 275 (754)
T PRK15370 250 INRIT-ELPERLP---SALQSLDLFHNKIS 275 (754)
T ss_pred CCccC-cCChhHh---CCCCEEECcCCccC
Confidence 55544 4444331 23444444444444
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=3.3e-19 Score=205.61 Aligned_cols=202 Identities=25% Similarity=0.351 Sum_probs=100.9
Q ss_pred CccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEE
Q 044158 380 NIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLL 459 (892)
Q Consensus 380 ~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~ 459 (892)
+.+.|+++++.++ .+|..+ .+.|+.|++++|+++. +|..+. ++|+.|++++|+++ .+|..+. .+|+.|+
T Consensus 179 ~~~~L~L~~~~Lt-sLP~~I---p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~ 247 (754)
T PRK15370 179 NKTELRLKILGLT-TIPACI---PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEME 247 (754)
T ss_pred CceEEEeCCCCcC-cCCccc---ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEE
Confidence 4566777777776 566544 3467777777777763 444333 36777777777666 5665432 3566666
Q ss_pred ccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccC
Q 044158 460 LSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEG 539 (892)
Q Consensus 460 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 539 (892)
+++|.+. .+|..+. .+|+.|++++|++. .+|..+. ++|+.|++++|++++
T Consensus 248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~------------------------ 297 (754)
T PRK15370 248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT------------------------ 297 (754)
T ss_pred CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc------------------------
Confidence 6666555 2333321 34555555555544 2333222 244444444444442
Q ss_pred CCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcccc
Q 044158 540 PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLC 619 (892)
Q Consensus 540 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 619 (892)
+|..+. ++|+.|++++|.++.+ |..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|+++ .+|..+
T Consensus 298 -LP~~lp--~sL~~L~Ls~N~Lt~L--P~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l- 365 (754)
T PRK15370 298 -LPAHLP--SGITHLNVQSNSLTAL--PETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL- 365 (754)
T ss_pred -Ccccch--hhHHHHHhcCCccccC--Cccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh-
Confidence 222111 2345555555555432 2111 1345555555555542 343332 45555555555554 344333
Q ss_pred CCCCCCEEEcCCCcCC
Q 044158 620 QLQKLRLLDLSHNNFS 635 (892)
Q Consensus 620 ~l~~L~~L~Ls~N~l~ 635 (892)
.++|+.|++++|+++
T Consensus 366 -p~~L~~LdLs~N~Lt 380 (754)
T PRK15370 366 -PPTITTLDVSRNALT 380 (754)
T ss_pred -cCCcCEEECCCCcCC
Confidence 235555555555554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=1.7e-19 Score=194.70 Aligned_cols=84 Identities=29% Similarity=0.249 Sum_probs=43.0
Q ss_pred EEECcCCcCccccchhHhhcCccCcEEEccCCccccc----ccccccccCCCcEEeecCccCcC------CCCcccccCC
Q 044158 432 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQ----LFSKKINLTKLKRLNLDGNHFIG------GIPESLSNCS 501 (892)
Q Consensus 432 ~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~------~~~~~~~~l~ 501 (892)
.|+|..+.+++.--...+..+.+|+.|+++++.++.. ++..+...++++.++++++.+.+ .++..+..++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4566666665333333444556677777777766432 23334445556666666655442 1122344444
Q ss_pred CCcEEEccCCcCCC
Q 044158 502 SLQGLYISDNDISG 515 (892)
Q Consensus 502 ~L~~L~L~~n~l~~ 515 (892)
+|+.|++++|.+.+
T Consensus 82 ~L~~L~l~~~~~~~ 95 (319)
T cd00116 82 GLQELDLSDNALGP 95 (319)
T ss_pred ceeEEEccCCCCCh
Confidence 55555555555443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=1.6e-18 Score=187.14 Aligned_cols=211 Identities=25% Similarity=0.307 Sum_probs=115.3
Q ss_pred hccCCCCCcEEECcCCcCccccchhHhhcCcc---CcEEEccCCcccc----ccccccccc-CCCcEEeecCccCcCC--
Q 044158 423 SFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFN---LEYLLLSNNSLQG----QLFSKKINL-TKLKRLNLDGNHFIGG-- 492 (892)
Q Consensus 423 ~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~---L~~L~L~~n~l~~----~~~~~~~~l-~~L~~L~L~~n~~~~~-- 492 (892)
.+..+++|+.|++++|.+.+..+..+ ..+.. |+.|++++|.+++ .+...+..+ ++|+.|++++|.+++.
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 154 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVL-ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC 154 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHH-HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence 34445555555555555543222222 12222 5555555555542 122233344 5666666666666532
Q ss_pred --CCcccccCCCCcEEEccCCcCCCC----ccccccCCCCCcEEECCCCcccCC----CcccccCCCCCcEEeCCCCccC
Q 044158 493 --IPESLSNCSSLQGLYISDNDISGS----IPTWMGNISFLDAIIMPDNHLEGP----IPSEFCQLDYLEILDLSKNNIA 562 (892)
Q Consensus 493 --~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~ 562 (892)
++..+..+++|++|++++|.+++. ++..+...++|+.|++++|.+++. ++..+..+++|++|++++|.++
T Consensus 155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence 223445556677777777666632 223344455677777776666532 2334556677777777777776
Q ss_pred CCccccccc----CCCCccEEEccCCccCc----cCChhhhcCCCCCEEeccccccccc----CCccccCC-CCCCEEEc
Q 044158 563 GRPLNGAFS----KCSYLLTLDLCNNRLNG----NIPNWMGRLSQLRYLILANNNFEGE----VPLRLCQL-QKLRLLDL 629 (892)
Q Consensus 563 ~~~~~~~~~----~~~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L 629 (892)
+..+..... ..+.|+.|++++|.++. .+...+..+++|+++++++|.+... ....+... +.|+.+++
T Consensus 235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 314 (319)
T cd00116 235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV 314 (319)
T ss_pred hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence 422111111 23678888888887762 2334455667788888888887743 33333334 67778887
Q ss_pred CCCcC
Q 044158 630 SHNNF 634 (892)
Q Consensus 630 s~N~l 634 (892)
.+|++
T Consensus 315 ~~~~~ 319 (319)
T cd00116 315 KDDSF 319 (319)
T ss_pred CCCCC
Confidence 77754
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=1.7e-18 Score=153.20 Aligned_cols=166 Identities=30% Similarity=0.496 Sum_probs=131.0
Q ss_pred ccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEE
Q 044158 475 NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL 554 (892)
Q Consensus 475 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 554 (892)
.+..++.|.+++|+++ .+|..+..+.+|+.|++++|++. .+|..+..+++|+.|+++-|++. ..|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 4556666677777766 45556777777777777777776 56667777777777777777776 678888888888888
Q ss_pred eCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcC
Q 044158 555 DLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNF 634 (892)
Q Consensus 555 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 634 (892)
|+.+|++..-.+|+-|..++.|+-|.|++|.+. .+|..++++++|+.|.++.|.+. ..|..++.+..|+.|.+.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 888888887778888888888888888888887 77888888889999999888887 6888888888899999999988
Q ss_pred CCCCCccccCCc
Q 044158 635 SGQIPPCLDNTS 646 (892)
Q Consensus 635 ~g~~p~~~~~~~ 646 (892)
+ .+|+.++++.
T Consensus 186 ~-vlppel~~l~ 196 (264)
T KOG0617|consen 186 T-VLPPELANLD 196 (264)
T ss_pred e-ecChhhhhhh
Confidence 7 7777777654
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.64 E-value=6.8e-18 Score=149.41 Aligned_cols=167 Identities=26% Similarity=0.464 Sum_probs=132.8
Q ss_pred ccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCC
Q 044158 545 FCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKL 624 (892)
Q Consensus 545 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 624 (892)
+.++...+.|.||+|+++. +|+.++.+.+|+.|++++|++. .+|..++.+++|+.|+++-|++. ..|..|+.++.|
T Consensus 29 Lf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l 104 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL 104 (264)
T ss_pred ccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence 3455667788888888874 4667788888888888888887 67778888888888888888887 788888889999
Q ss_pred CEEEcCCCcCCCC-CCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCcccee
Q 044158 625 RLLDLSHNNFSGQ-IPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGL 703 (892)
Q Consensus 625 ~~L~Ls~N~l~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 703 (892)
+.|||+.|+++.. +|..|. .++.|+.|
T Consensus 105 evldltynnl~e~~lpgnff----------------------------------------------------~m~tlral 132 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFF----------------------------------------------------YMTTLRAL 132 (264)
T ss_pred hhhhccccccccccCCcchh----------------------------------------------------HHHHHHHH
Confidence 9999988887632 232221 13357788
Q ss_pred eccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCC
Q 044158 704 DLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELN 770 (892)
Q Consensus 704 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 770 (892)
+|+.|.+. .+|.+++++++|+.|.+..|.+- ..|..++.++.|+.|.+.+|+++ .+|..++++.
T Consensus 133 yl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~ 196 (264)
T KOG0617|consen 133 YLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLD 196 (264)
T ss_pred HhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhh
Confidence 99999987 78889999999999999999887 78889999999999999999998 6777766543
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.62 E-value=1.7e-15 Score=175.06 Aligned_cols=119 Identities=34% Similarity=0.606 Sum_probs=107.6
Q ss_pred ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158 699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778 (892)
Q Consensus 699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls 778 (892)
.++.|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCcccccc-CCCCcccccCCCCCCCCCCCCCCC
Q 044158 779 HNNLSGKIPERIAQF-ATFDEDSYEGNPFLCGPPLPKICN 817 (892)
Q Consensus 779 ~N~l~g~ip~~~~~~-~~~~~~~~~gN~~lc~~~l~~~c~ 817 (892)
+|+++|.+|..++.. ......++.+|+++|+.|....|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 999999999865442 344567899999999977555664
No 24
>PLN03150 hypothetical protein; Provisional
Probab=99.30 E-value=7.2e-12 Score=145.06 Aligned_cols=114 Identities=28% Similarity=0.475 Sum_probs=101.3
Q ss_pred CCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccce
Q 044158 623 KLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHG 702 (892)
Q Consensus 623 ~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~ 702 (892)
.++.|+|++|.++|.+|..+..+ ++|+.
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L----------------------------------------------------~~L~~ 446 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKL----------------------------------------------------RHLQS 446 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCC----------------------------------------------------CCCCE
Confidence 46789999999999998876543 36899
Q ss_pred eeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCC-CCCCEEEccCCc
Q 044158 703 LDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVEL-NALAVFTVAHNN 781 (892)
Q Consensus 703 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~l~ls~N~ 781 (892)
|+|++|.++|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|+++|.+|..+..+ ..+..+++++|.
T Consensus 447 L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 447 INLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred EECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999998764 467889999998
Q ss_pred ccccCCc
Q 044158 782 LSGKIPE 788 (892)
Q Consensus 782 l~g~ip~ 788 (892)
..+.+|.
T Consensus 527 ~lc~~p~ 533 (623)
T PLN03150 527 GLCGIPG 533 (623)
T ss_pred cccCCCC
Confidence 6655553
No 25
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.29 E-value=1.1e-13 Score=145.74 Aligned_cols=177 Identities=29% Similarity=0.476 Sum_probs=152.4
Q ss_pred CCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCE
Q 044158 547 QLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRL 626 (892)
Q Consensus 547 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 626 (892)
.+.--...|++.|++.. +|..+..+..|+.+.|..|.+. .+|..+.++..|++|+|+.|+++ ..|..++.++ |+.
T Consensus 73 ~ltdt~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSE--LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred cccchhhhhcccccccc--CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 34445678999999984 5677788889999999999987 78999999999999999999998 7888898886 899
Q ss_pred EEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeecc
Q 044158 627 LDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLS 706 (892)
Q Consensus 627 L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 706 (892)
|-+++|+++ .+|..++. ...|..||.|
T Consensus 148 li~sNNkl~-~lp~~ig~----------------------------------------------------~~tl~~ld~s 174 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGL----------------------------------------------------LPTLAHLDVS 174 (722)
T ss_pred EEEecCccc-cCCccccc----------------------------------------------------chhHHHhhhh
Confidence 999999997 77766652 2257789999
Q ss_pred CccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccccc
Q 044158 707 CNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGK 785 (892)
Q Consensus 707 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ 785 (892)
.|++. .+|..++.+.+|+.|++..|++. ..|.++..| .|..||+|+|+++ .||..|.+|+.|++|-|.+|+|..+
T Consensus 175 ~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP 249 (722)
T KOG0532|consen 175 KNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP 249 (722)
T ss_pred hhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence 99998 78999999999999999999999 566677755 4889999999999 8999999999999999999999854
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=1.2e-13 Score=145.27 Aligned_cols=188 Identities=27% Similarity=0.450 Sum_probs=113.2
Q ss_pred EccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCcc
Q 044158 507 YISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRL 586 (892)
Q Consensus 507 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 586 (892)
|++.|++. .+|..+..+..|+.+.|..|.+. .+|..++++..|..|||+.|+++. +|..+..|+ |+.|-+++|++
T Consensus 81 DlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 81 DLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEecCcc
Confidence 33333333 33333333333444444444443 445555555555555665555553 233333332 56666666666
Q ss_pred CccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccccccccccccc
Q 044158 587 NGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDI 666 (892)
Q Consensus 587 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (892)
+ .+|..++.+..|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|+.+..++
T Consensus 156 ~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-------------------- 212 (722)
T KOG0532|consen 156 T-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-------------------- 212 (722)
T ss_pred c-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc--------------------
Confidence 5 55666666666667777777666 56666777777777777777765 4555444332
Q ss_pred ccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccc---c
Q 044158 667 VSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTF---S 743 (892)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~ 743 (892)
|..||+|+|+++ .||.+|.+|+.|++|-|.+|.|. ..|..+ |
T Consensus 213 ---------------------------------Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kG 257 (722)
T KOG0532|consen 213 ---------------------------------LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKG 257 (722)
T ss_pred ---------------------------------eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhcc
Confidence 667888888887 78888888888888888888888 566654 3
Q ss_pred CCCCCCEEECCCCc
Q 044158 744 NLRQVESLDLSYNN 757 (892)
Q Consensus 744 ~l~~L~~LdLs~N~ 757 (892)
...-.++|+...++
T Consensus 258 kVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 258 KVHIFKYLSTQACQ 271 (722)
T ss_pred ceeeeeeecchhcc
Confidence 33445667776664
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.23 E-value=1.9e-11 Score=135.77 Aligned_cols=181 Identities=35% Similarity=0.539 Sum_probs=104.9
Q ss_pred CCCCCcEEeCCCCccCCCcccccccCCC-CccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCC
Q 044158 547 QLDYLEILDLSKNNIAGRPLNGAFSKCS-YLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLR 625 (892)
Q Consensus 547 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 625 (892)
.++.++.|++.+|.++. ++....... +|+.|++++|++. .+|..++.+++|+.|++++|++. .+|...+..+.|+
T Consensus 114 ~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~ 189 (394)
T COG4886 114 ELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN 189 (394)
T ss_pred cccceeEEecCCccccc--Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence 33555666666666653 233333332 5666666666665 34455566666666666666666 4444444566666
Q ss_pred EEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeec
Q 044158 626 LLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDL 705 (892)
Q Consensus 626 ~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~L 705 (892)
.|++++|+++ .+|.... ....|+.+++
T Consensus 190 ~L~ls~N~i~-~l~~~~~----------------------------------------------------~~~~L~~l~~ 216 (394)
T COG4886 190 NLDLSGNKIS-DLPPEIE----------------------------------------------------LLSALEELDL 216 (394)
T ss_pred heeccCCccc-cCchhhh----------------------------------------------------hhhhhhhhhh
Confidence 6666666665 3333211 0113556666
Q ss_pred cCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccccc
Q 044158 706 SCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGK 785 (892)
Q Consensus 706 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ 785 (892)
++|.+. .++..+..+..+..|.+++|++. .++..++.+++++.|++++|+++ .++. +..+..++.|++++|.++..
T Consensus 217 ~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 217 SNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred cCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccc-cccc-ccccCccCEEeccCcccccc
Confidence 666433 45556666666666666666665 33556666667777777777776 3333 66666777777777776655
Q ss_pred CCc
Q 044158 786 IPE 788 (892)
Q Consensus 786 ip~ 788 (892)
.|.
T Consensus 293 ~~~ 295 (394)
T COG4886 293 LPL 295 (394)
T ss_pred chh
Confidence 554
No 28
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=1.4e-11 Score=115.92 Aligned_cols=129 Identities=36% Similarity=0.459 Sum_probs=38.7
Q ss_pred CCCCCcEEeCCCCccCCccccccccccC-CCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCC
Q 044158 47 PFQQLESLDLSGNNIAGCVENEGLEKLS-GLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSL 125 (892)
Q Consensus 47 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l 125 (892)
+..++++|+|++|.|+.+. .++ .+.+|+.|+|++|.|+.. +.+..+++|++|++++|.++ .++......+
T Consensus 17 n~~~~~~L~L~~n~I~~Ie------~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~l 87 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE------NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNL 87 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-
T ss_pred ccccccccccccccccccc------chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhC
Confidence 4445677777777665432 233 456677777777776642 34666677777777777766 4543122346
Q ss_pred CCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccc-cccccCCCCCCEEEC
Q 044158 126 SNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKV-LHSIGSFPSLKTLYL 184 (892)
Q Consensus 126 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~-~~~l~~l~~L~~L~L 184 (892)
++|++|++++|+|.....-..+..+++|++|++.+|.++..... ...+..+|+|+.||-
T Consensus 88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 66777777777666544333455666666666666666543111 122344555555543
No 29
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.4e-12 Score=130.63 Aligned_cols=216 Identities=23% Similarity=0.275 Sum_probs=136.6
Q ss_pred CCCCCCCEEeCCCCCCCCccc-ccccCCCCCCEEecCCcccccCCCh-hhhcCCCCCCEEeCCCCCCCCccccccccCCC
Q 044158 74 SGLSNLKFLDLSHNSFNNSVL-SSLAGLSSLKNLSLAYNRLEGSINI-EELDSLSNLEGLDMSDNEIDNLVVPKDYRGLR 151 (892)
Q Consensus 74 ~~l~~L~~L~Ls~n~i~~~~~-~~l~~l~~L~~L~Ls~n~l~~~i~~-~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~ 151 (892)
+++.+|+...|.++.+..... .....|++++.||||.|-+..--+. .....+++|+.|+|+.|++........-..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 567778888887777653222 3556778888888888766532222 23456788888888888776543333334567
Q ss_pred CCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCc-cccccCCCCCc
Q 044158 152 KLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSL-PWCLANLTSLR 230 (892)
Q Consensus 152 ~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~ 230 (892)
.|+.|.++.|.++.. .+...+..+|+|+.|.|.+|........ ...-+..|++|||++|++.... -...+.++.|+
T Consensus 198 ~lK~L~l~~CGls~k-~V~~~~~~fPsl~~L~L~~N~~~~~~~~--~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWK-DVQWILLTFPSLEVLYLEANEIILIKAT--STKILQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhheEEeccCCCCHH-HHHHHHHhCCcHHHhhhhcccccceecc--hhhhhhHHhhccccCCcccccccccccccccchh
Confidence 788888888887732 2334455678888888888752222211 3344567888888888765432 13456778888
Q ss_pred EEeCCCCCcccccCCCc-----ccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCcccccc
Q 044158 231 VLHVPDNQLTENLSSSP-----LMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGE 292 (892)
Q Consensus 231 ~L~L~~n~l~~~~~~~~-----l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 292 (892)
.|+++.+.+.+...++. ...+++|++|++..|++..--....+..+++|+.+.+..+.+..+
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 88888887765322222 356778888888888775433444555666777777666666543
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.15 E-value=5.9e-11 Score=131.78 Aligned_cols=180 Identities=34% Similarity=0.532 Sum_probs=103.5
Q ss_pred CCCcEEECCCCcccCCCcccccCCC-CCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEE
Q 044158 525 SFLDAIIMPDNHLEGPIPSEFCQLD-YLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYL 603 (892)
Q Consensus 525 ~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 603 (892)
+.++.+++.+|.++ .++....... +|+.|++++|++.. +|..+..+++|+.|++++|+++ .+|...+..++|+.|
T Consensus 116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccc-cCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 34444444444444 2333333442 56666666666553 2234556666666666666665 344444455666666
Q ss_pred ecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEe
Q 044158 604 ILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDF 683 (892)
Q Consensus 604 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (892)
++++|++. .+|........|++|.+++|++. .++..+.+
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~--------------------------------------- 230 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSN--------------------------------------- 230 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhh---------------------------------------
Confidence 66666666 45554444555666666666422 12222211
Q ss_pred eecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCC
Q 044158 684 TTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIP 763 (892)
Q Consensus 684 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip 763 (892)
+..+..+.+++|++. .+|..++.+++++.|++++|.++. ++. ++.+.+++.||+++|.++...|
T Consensus 231 -------------~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~-i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 231 -------------LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS-ISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred -------------cccccccccCCceee-eccchhccccccceeccccccccc-ccc-ccccCccCEEeccCccccccch
Confidence 123444556666665 236667777778888888888873 333 7788888888888888886655
Q ss_pred cc
Q 044158 764 PR 765 (892)
Q Consensus 764 ~~ 765 (892)
..
T Consensus 295 ~~ 296 (394)
T COG4886 295 LI 296 (394)
T ss_pred hh
Confidence 54
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.5e-11 Score=124.32 Aligned_cols=64 Identities=30% Similarity=0.356 Sum_probs=28.8
Q ss_pred cCCCCCEEEccCCcCcCCCC-CCCCCCCCccEEEccCCcCCCCCc-hhhhhcCCCCcEEECcCCcC
Q 044158 353 NNTNLRSIILANNSLSGPFR-LPTRSRKNIIALDISYNKLQGHIP-VEIGKVLPNLGFLTISFNAF 416 (892)
Q Consensus 353 ~~~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~l~~n~l~~~i~-~~~~~~l~~L~~L~L~~n~~ 416 (892)
++.+|+++.|+++....... .....+++++.|||+.|-+....+ ..+...+|+|+.|+++.|.+
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl 184 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRL 184 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccc
Confidence 45556666666665543221 123344555555555554432111 12233344555555554444
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.03 E-value=1.5e-11 Score=122.72 Aligned_cols=191 Identities=22% Similarity=0.231 Sum_probs=85.5
Q ss_pred CCCCCCEEecCCcccccCCCh---hhhcCCCCCCEEeCCCCCCCCccc------------cccccCCCCCcEEeCCCCcC
Q 044158 99 GLSSLKNLSLAYNRLEGSINI---EELDSLSNLEGLDMSDNEIDNLVV------------PKDYRGLRKLRFLDLSGLRI 163 (892)
Q Consensus 99 ~l~~L~~L~Ls~n~l~~~i~~---~~l~~l~~L~~L~L~~n~i~~~~~------------~~~~~~l~~L~~L~L~~n~i 163 (892)
.+++|++||||+|.+.-.-+. ..+++++.|++|.|.+|.+..... ......-++||++...+|++
T Consensus 90 ~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 90 GCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred cCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 444555555555544311111 123445555555555554432210 11123334566666666665
Q ss_pred CCCc--cccccccCCCCCCEEECCCCCCCCc--cCCcccccCCCCCcEEEccCCcCccC----ccccccCCCCCcEEeCC
Q 044158 164 RDGS--KVLHSIGSFPSLKTLYLKSNNFAKT--VTTTQGLCELAHLQELYIDHNDFIGS----LPWCLANLTSLRVLHVP 235 (892)
Q Consensus 164 ~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~ 235 (892)
.+.. .+...+...+.|+.+.++.|.+... .....++..+++|++|||.+|.++.. +...+..+++|+.|+++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 5432 1233445555666666666554321 11122445556666666666655432 22334445556666666
Q ss_pred CCCcccccCCC----cccccccCcEEeccCccccCC---CCchhhcCCCCccEEEccCccc
Q 044158 236 DNQLTENLSSS----PLMHLTSIELLILSNNHFQIP---MSLEPFFNYSKLKIFHGRENQI 289 (892)
Q Consensus 236 ~n~l~~~~~~~----~l~~l~~L~~L~L~~n~l~~~---~~~~~~~~l~~L~~l~l~~~~~ 289 (892)
+|.+...-... .-...++|+.|.+.+|.++.. .........+.|+.|++++|.+
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 66554311000 011245566666666554411 1111223344555555555544
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.02 E-value=1.4e-11 Score=122.97 Aligned_cols=241 Identities=22% Similarity=0.265 Sum_probs=174.5
Q ss_pred CcEEEEEcCCCcccc-ccccCcccCCCCCCCcEEeCCCCccCCccccc-------cccccCCCCCCCEEeCCCCCCCCcc
Q 044158 22 SRVIAIDLLSLNIAS-ALYLNFSLFTPFQQLESLDLSGNNIAGCVENE-------GLEKLSGLSNLKFLDLSHNSFNNSV 93 (892)
Q Consensus 22 ~~v~~l~L~~~~~~~-~~~~~~s~f~~~~~L~~L~Ls~n~i~~~~~~~-------~~~~~~~l~~L~~L~Ls~n~i~~~~ 93 (892)
..++.|+|+|+.+.- ....-...+++-++|+..++|.-. +|-.... ...++..+++|++||||+|-+....
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~f-tGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMF-TGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhh-cCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 469999999986531 122223456778899999998753 3322211 1134567889999999999886544
Q ss_pred cc----cccCCCCCCEEecCCcccccCCChh-------------hhcCCCCCCEEeCCCCCCCCccc---cccccCCCCC
Q 044158 94 LS----SLAGLSSLKNLSLAYNRLEGSINIE-------------ELDSLSNLEGLDMSDNEIDNLVV---PKDYRGLRKL 153 (892)
Q Consensus 94 ~~----~l~~l~~L~~L~Ls~n~l~~~i~~~-------------~l~~l~~L~~L~L~~n~i~~~~~---~~~~~~l~~L 153 (892)
+. .+..+..|++|.|.+|.+. ..... ..+.-++|+++....|++..... ...|...+.|
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg-~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLG-PEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCC-hhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 43 3568999999999999875 22111 23456899999999999876432 3457788999
Q ss_pred cEEeCCCCcCCCCc--cccccccCCCCCCEEECCCCCCCCc--cCCcccccCCCCCcEEEccCCcCccCccccc-----c
Q 044158 154 RFLDLSGLRIRDGS--KVLHSIGSFPSLKTLYLKSNNFAKT--VTTTQGLCELAHLQELYIDHNDFIGSLPWCL-----A 224 (892)
Q Consensus 154 ~~L~L~~n~i~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l-----~ 224 (892)
+.+.++.|.|.... .....+..+++|++|||.+|.++.. ......++.+++|++|++++|.+.......+ .
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 99999999986542 2446788999999999999988643 2223357788999999999999876544333 2
Q ss_pred CCCCCcEEeCCCCCccccc---CCCcccccccCcEEeccCccc
Q 044158 225 NLTSLRVLHVPDNQLTENL---SSSPLMHLTSIELLILSNNHF 264 (892)
Q Consensus 225 ~l~~L~~L~L~~n~l~~~~---~~~~l~~l~~L~~L~L~~n~l 264 (892)
..|+|++|.+.+|.++..- ....+...+.|+.|+|++|.+
T Consensus 268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3689999999999987421 122445689999999999988
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=3.6e-10 Score=106.43 Aligned_cols=83 Identities=28% Similarity=0.319 Sum_probs=25.4
Q ss_pred ccCCCCCcEEeCCCCccCCCcccccc-cCCCCccEEEccCCccCccCC-hhhhcCCCCCEEecccccccccC---Ccccc
Q 044158 545 FCQLDYLEILDLSKNNIAGRPLNGAF-SKCSYLLTLDLCNNRLNGNIP-NWMGRLSQLRYLILANNNFEGEV---PLRLC 619 (892)
Q Consensus 545 ~~~l~~L~~L~Ls~n~l~~~~~~~~~-~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~---~~~~~ 619 (892)
+..++.|++|++++|+++.+ .+.+ ..+++|++|++++|++...-. ..+..+++|+.|+|.+|++...- ...+.
T Consensus 60 l~~L~~L~~L~L~~N~I~~i--~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~ 137 (175)
T PF14580_consen 60 LPGLPRLKTLDLSNNRISSI--SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIY 137 (175)
T ss_dssp ----TT--EEE--SS---S---CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHH
T ss_pred ccChhhhhhcccCCCCCCcc--ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHH
Confidence 33444455555555555432 1122 234555555555555543211 33445555666666666555221 11244
Q ss_pred CCCCCCEEEc
Q 044158 620 QLQKLRLLDL 629 (892)
Q Consensus 620 ~l~~L~~L~L 629 (892)
.+|+|+.||-
T Consensus 138 ~lP~Lk~LD~ 147 (175)
T PF14580_consen 138 KLPSLKVLDG 147 (175)
T ss_dssp H-TT-SEETT
T ss_pred HcChhheeCC
Confidence 5666666653
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.98 E-value=1.6e-10 Score=112.30 Aligned_cols=60 Identities=35% Similarity=0.435 Sum_probs=45.0
Q ss_pred CCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158 573 CSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635 (892)
Q Consensus 573 ~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 635 (892)
...|+++||++|.|+ .+.+.+.-.|.++.|++|+|.+... +.+..+++|+.||||+|.++
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls 342 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA 342 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH
Confidence 456778888888777 5566666678888888888888732 23777888888888888776
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.93 E-value=2.3e-10 Score=111.25 Aligned_cols=134 Identities=29% Similarity=0.307 Sum_probs=86.0
Q ss_pred hcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccC
Q 044158 122 LDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCE 201 (892)
Q Consensus 122 l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 201 (892)
+.....|+++||++|.|+.+ .+...-.|+++.|+++.|.+... ..+..+++|++|||++|.++...-. -.+
T Consensus 280 ~dTWq~LtelDLS~N~I~~i--DESvKL~Pkir~L~lS~N~i~~v----~nLa~L~~L~~LDLS~N~Ls~~~Gw---h~K 350 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQI--DESVKLAPKLRRLILSQNRIRTV----QNLAELPQLQLLDLSGNLLAECVGW---HLK 350 (490)
T ss_pred cchHhhhhhccccccchhhh--hhhhhhccceeEEeccccceeee----hhhhhcccceEeecccchhHhhhhh---Hhh
Confidence 34456677777777777765 34466667777777777777643 4466677777777777766544322 334
Q ss_pred CCCCcEEEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccC
Q 044158 202 LAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQI 266 (892)
Q Consensus 202 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~ 266 (892)
+.+++.|.|+.|.+.+. ..++++-+|..||+++|+|..--....++++|-|+.+.+.+|.+.+
T Consensus 351 LGNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred hcCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence 56677777777765422 2456666777777777776542223456667777777777776654
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.80 E-value=7.9e-10 Score=122.73 Aligned_cols=225 Identities=25% Similarity=0.244 Sum_probs=122.3
Q ss_pred cccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCc
Q 044158 497 LSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYL 576 (892)
Q Consensus 497 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L 576 (892)
+..+++|+.|++.+|++... ...+..+++|++|++++|.|+... .+..++.|+.|++++|.++.+. .+..++.|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~l~~N~i~~~~---~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELNLSGNLISDIS---GLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhhc-ccchhhhhcchheecccccccccc--chhhccchhhheeccCcchhcc---CCccchhh
Confidence 33444444444444444422 111334444555555555444322 2344445666666666666532 44456667
Q ss_pred cEEEccCCccCccCC-hhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccc
Q 044158 577 LTLDLCNNRLNGNIP-NWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYD 655 (892)
Q Consensus 577 ~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~ 655 (892)
+.+++++|++...-+ . ...+.+++.+.+.+|.+.. ...+..+..+..+++..|.++-.-+.
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~--i~~~~~~~~l~~~~l~~n~i~~~~~l--------------- 226 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE--IEGLDLLKKLVLLSLLDNKISKLEGL--------------- 226 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc--ccchHHHHHHHHhhcccccceeccCc---------------
Confidence 777777776664333 2 4556677777777777652 22333444455556666666511000
Q ss_pred cccccccccccccccCCCCCCCcceeEeeecccccccCCCCcC--ccceeeccCccccccCCccccccCCCCEEEccCcc
Q 044158 656 LIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLE--SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNN 733 (892)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 733 (892)
..+. +|+.+++++|.+. .++..+..+..+..|+++.|+
T Consensus 227 ---------------------------------------~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 227 ---------------------------------------NELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred ---------------------------------------ccchhHHHHHHhcccCccc-cccccccccccccccchhhcc
Confidence 0001 2667777777776 344556667777778888777
Q ss_pred CCccccccccCCCCCCEEECCCCcCccc---CCcc-ccCCCCCCEEEccCCcccccCC
Q 044158 734 LTGTIPVTFSNLRQVESLDLSYNNLTGK---IPPR-LVELNALAVFTVAHNNLSGKIP 787 (892)
Q Consensus 734 l~~~~p~~~~~l~~L~~LdLs~N~l~g~---ip~~-l~~l~~L~~l~ls~N~l~g~ip 787 (892)
+...- .+.....+..+.++.|.+... .... ....+.+....+.+|+.....+
T Consensus 267 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 267 ISNLE--GLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISS 322 (414)
T ss_pred ccccc--cccccchHHHhccCcchhcchhhhhccccccccccccccccccCccccccc
Confidence 76332 234556666677777766521 1111 4556677778888887766554
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.77 E-value=7.7e-10 Score=122.81 Aligned_cols=219 Identities=28% Similarity=0.322 Sum_probs=153.7
Q ss_pred ccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCcc
Q 044158 498 SNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLL 577 (892)
Q Consensus 498 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~ 577 (892)
..+..++.+.+..|.+.. +-..+..+.+|+.+++.+|++.+.. ..+..+++|++|++++|.|+.+. .+..++.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i~-~~l~~~~~L~~L~ls~N~I~~i~---~l~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKIE-NLLSSLVNLQVLDLSFNKITKLE---GLSTLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhcc-cchhhhhcchheecccccccccc---chhhccchh
Confidence 345566666677777763 3345677888999999999987543 22677888999999999988744 566777799
Q ss_pred EEEccCCccCccCChhhhcCCCCCEEecccccccccCC-ccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccc
Q 044158 578 TLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVP-LRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDL 656 (892)
Q Consensus 578 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~ 656 (892)
.|++++|.+... ..+..++.|+.+++++|++...-+ . ...+.+++.+++++|.+.-.-. +.
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~------------- 205 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LD------------- 205 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hH-------------
Confidence 999999988732 345558889999999998885433 2 4677888888888888751100 00
Q ss_pred ccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCC--CCEEEccCccC
Q 044158 657 IPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIR--IHTLNLSRNNL 734 (892)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l 734 (892)
.+..+..+++..|.++-.-+ +..+.. |+.+++++|.+
T Consensus 206 ---------------------------------------~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i 244 (414)
T KOG0531|consen 206 ---------------------------------------LLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRI 244 (414)
T ss_pred ---------------------------------------HHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCcc
Confidence 01134445778888763322 223333 88999999999
Q ss_pred CccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccc
Q 044158 735 TGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783 (892)
Q Consensus 735 ~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 783 (892)
. .++..+..+..+..||+++|++... ..+.....+..+....|.+.
T Consensus 245 ~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~ 290 (414)
T KOG0531|consen 245 S-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLA 290 (414)
T ss_pred c-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhc
Confidence 8 4446777889999999999998854 23455667777788888765
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.77 E-value=6.5e-09 Score=122.97 Aligned_cols=87 Identities=28% Similarity=0.290 Sum_probs=48.8
Q ss_pred cCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCC
Q 044158 73 LSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRK 152 (892)
Q Consensus 73 ~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~ 152 (892)
|..++.|++||||+|.--+.+|.+++.+-+||+|+++++.+. .+|. .++++.+|.+|++..+.-.... +.....+++
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~ 643 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLESI-PGILLELQS 643 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccch-HHHHHHhhheeccccccccccc-cchhhhccc
Confidence 555666666666665544456666666666666666666655 4555 5666666666666655433222 333444556
Q ss_pred CcEEeCCCCc
Q 044158 153 LRFLDLSGLR 162 (892)
Q Consensus 153 L~~L~L~~n~ 162 (892)
||+|.+....
T Consensus 644 Lr~L~l~~s~ 653 (889)
T KOG4658|consen 644 LRVLRLPRSA 653 (889)
T ss_pred ccEEEeeccc
Confidence 6666555443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=5.1e-09 Score=80.93 Aligned_cols=59 Identities=42% Similarity=0.594 Sum_probs=28.5
Q ss_pred CCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCc
Q 044158 723 RIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNN 781 (892)
Q Consensus 723 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~ 781 (892)
+|++|++++|+++...+..|.++++|++||+++|+++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444443333444445555555555555544444444555555555555544
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.73 E-value=8.9e-09 Score=79.56 Aligned_cols=60 Identities=48% Similarity=0.617 Sum_probs=56.1
Q ss_pred ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcC
Q 044158 699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNL 758 (892)
Q Consensus 699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 758 (892)
+|+.|++++|+++...+..|..+++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 588999999999977667899999999999999999988889999999999999999986
No 42
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.64 E-value=6.9e-08 Score=114.40 Aligned_cols=273 Identities=22% Similarity=0.237 Sum_probs=165.9
Q ss_pred CCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCc--CCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCc
Q 044158 354 NTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNK--LQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLI 431 (892)
Q Consensus 354 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~--l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 431 (892)
....+.+.+-+|.+.... .-..+++|++|-+..|. +. .++..+|..+|.|+.|||++|.-.+..|..++.+-+|+
T Consensus 522 ~~~~rr~s~~~~~~~~~~--~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIA--GSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred hhheeEEEEeccchhhcc--CCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 355667777666654321 12234478888888886 44 77777777789999999998887778899999999999
Q ss_pred EEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCc--CCCCcccccCCCCcEEEcc
Q 044158 432 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFI--GGIPESLSNCSSLQGLYIS 509 (892)
Q Consensus 432 ~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~--~~~~~~~~~l~~L~~L~L~ 509 (892)
+|++++..+. .+|..+ .++..|.+|++..+.-...++.....+.+|++|.+..-... ...-..+.++.+|+.+...
T Consensus 599 yL~L~~t~I~-~LP~~l-~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGL-GNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred cccccCCCcc-ccchHH-HHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 9999999988 888887 47888999999888766666667777889999988765422 1112334555666666554
Q ss_pred CCcCCCCccccccCCCCCc----EEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCccccccc-----C-CCCccEE
Q 044158 510 DNDISGSIPTWMGNISFLD----AIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFS-----K-CSYLLTL 579 (892)
Q Consensus 510 ~n~l~~~~~~~~~~~~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----~-~~~L~~L 579 (892)
.... .+-..+..++.|. .+.+..+... ..+..+..+.+|+.|.+.++.+..... .... . ++++..+
T Consensus 677 ~~s~--~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~-~~~~~~~~~~~f~~l~~~ 752 (889)
T KOG4658|consen 677 ISSV--LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVI-EWEESLIVLLCFPNLSKV 752 (889)
T ss_pred cchh--HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhc-ccccccchhhhHHHHHHH
Confidence 3332 1111122222222 2333232222 334456677788888888877754211 0100 0 1223333
Q ss_pred EccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCC
Q 044158 580 DLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSG 636 (892)
Q Consensus 580 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g 636 (892)
...++..- ..+.|..-.++|+.|.+..+.....+......+..+..+-+..+.+.+
T Consensus 753 ~~~~~~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~ 808 (889)
T KOG4658|consen 753 SILNCHML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEG 808 (889)
T ss_pred Hhhccccc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEeccccccc
Confidence 33333222 234444556778888887777665555555555555555555555554
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2.5e-09 Score=104.33 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=6.8
Q ss_pred cCCCCCCEEECCCCCC
Q 044158 174 GSFPSLKTLYLKSNNF 189 (892)
Q Consensus 174 ~~l~~L~~L~L~~n~l 189 (892)
.+|+.|..|++++|.+
T Consensus 257 ~scs~L~~LNlsWc~l 272 (419)
T KOG2120|consen 257 SSCSRLDELNLSWCFL 272 (419)
T ss_pred HhhhhHhhcCchHhhc
Confidence 3344444444444433
No 44
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.44 E-value=2.8e-08 Score=97.14 Aligned_cols=109 Identities=27% Similarity=0.291 Sum_probs=68.3
Q ss_pred CCcEEeCCCCccCCcccccccccc-CCCCCCCEEeCCCCCCCCc--ccccccCCCCCCEEecCCcccccCCChhhh-cCC
Q 044158 50 QLESLDLSGNNIAGCVENEGLEKL-SGLSNLKFLDLSHNSFNNS--VLSSLAGLSSLKNLSLAYNRLEGSINIEEL-DSL 125 (892)
Q Consensus 50 ~L~~L~Ls~n~i~~~~~~~~~~~~-~~l~~L~~L~Ls~n~i~~~--~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l-~~l 125 (892)
.++.|-+.++.|...... ..| +..++++.|||.+|.|++- +..-+.++|+|++|+|+.|.+...|. .+ ..+
T Consensus 46 a~ellvln~~~id~~gd~---~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~--~lp~p~ 120 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDV---MLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK--SLPLPL 120 (418)
T ss_pred chhhheecCCCCCcchhH---HHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc--cCcccc
Confidence 444555556665433221 223 3567788888888888752 34445688888888888888774443 23 355
Q ss_pred CCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcC
Q 044158 126 SNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRI 163 (892)
Q Consensus 126 ~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i 163 (892)
.+|++|-|.+..+.-......+..+|++++|.++.|.+
T Consensus 121 ~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 121 KNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred cceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 67788877777665443344466777777777777644
No 45
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.41 E-value=1e-08 Score=105.05 Aligned_cols=237 Identities=21% Similarity=0.147 Sum_probs=130.5
Q ss_pred CCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCC-CCCccccccc-CCCCCCEEecCCcc-cccCCChhhhcCC
Q 044158 49 QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNS-FNNSVLSSLA-GLSSLKNLSLAYNR-LEGSINIEELDSL 125 (892)
Q Consensus 49 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~l~-~l~~L~~L~Ls~n~-l~~~i~~~~l~~l 125 (892)
..|+.|.+.++.-.+..... ..-..++++++|++.++. +++....+++ .+++|++|++..|. ++...-......+
T Consensus 138 g~lk~LSlrG~r~v~~sslr--t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLR--TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCCcchhh--HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 35777777776543322110 123478888888888884 4544444443 67888888888743 3321111133567
Q ss_pred CCCCEEeCCCCC-CCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCC
Q 044158 126 SNLEGLDMSDNE-IDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAH 204 (892)
Q Consensus 126 ~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~ 204 (892)
++|++|+++.|. |++-.....+.+++.++.+.+.++.-...+.+...-+.+..+.++++..|...........-..+..
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 888888888774 5543333446777777777777654433322222334455667777666643332222222345677
Q ss_pred CcEEEccCCcCccC-ccccc-cCCCCCcEEeCCCCCcccccCCCcc-cccccCcEEeccCccccCCCCc-hhhcCCCCcc
Q 044158 205 LQELYIDHNDFIGS-LPWCL-ANLTSLRVLHVPDNQLTENLSSSPL-MHLTSIELLILSNNHFQIPMSL-EPFFNYSKLK 280 (892)
Q Consensus 205 L~~L~L~~n~l~~~-~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~-~~~~~l~~L~ 280 (892)
|+.|+.+++...+. .-..+ .+..+|+.+.++.++--+......+ .+++.|+.+++..+........ ..-.+++.|+
T Consensus 296 lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr 375 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLR 375 (483)
T ss_pred hhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhc
Confidence 88888877643222 22233 3467888888887763222222222 2566777777776643322111 1223455555
Q ss_pred EEEccCc
Q 044158 281 IFHGREN 287 (892)
Q Consensus 281 ~l~l~~~ 287 (892)
.+.++.+
T Consensus 376 ~lslshc 382 (483)
T KOG4341|consen 376 VLSLSHC 382 (483)
T ss_pred cCChhhh
Confidence 5555544
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.36 E-value=1.9e-08 Score=86.74 Aligned_cols=85 Identities=21% Similarity=0.317 Sum_probs=46.6
Q ss_pred cceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccC
Q 044158 700 IHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAH 779 (892)
Q Consensus 700 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~ 779 (892)
++.+++++|+++ .+|.++..++.|+.||++.|.+. ..|..+..+.++..||..+|.+. +||..+---+.....++.+
T Consensus 79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgn 155 (177)
T KOG4579|consen 79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGN 155 (177)
T ss_pred hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcC
Confidence 555666666665 45666666666666666666665 44555555666666666666655 4544433323333334444
Q ss_pred CcccccCC
Q 044158 780 NNLSGKIP 787 (892)
Q Consensus 780 N~l~g~ip 787 (892)
+++.+..|
T Consensus 156 epl~~~~~ 163 (177)
T KOG4579|consen 156 EPLGDETK 163 (177)
T ss_pred CcccccCc
Confidence 44444444
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=2.9e-08 Score=96.99 Aligned_cols=159 Identities=18% Similarity=0.189 Sum_probs=90.2
Q ss_pred CCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCC-cCCCCCchhhhhcCCCCcE
Q 044158 330 HHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYN-KLQGHIPVEIGKVLPNLGF 408 (892)
Q Consensus 330 ~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~i~~~~~~~l~~L~~ 408 (892)
+.++.+|++...++..--..++..|.+|+.|.+.++++.+.+...+....+|+.|+++.+ .++..--..++..++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 357777887777766555566778888888888888887766666777777888888765 3442223344555777777
Q ss_pred EECcCCcCCccCchh-ccC-CCCCcEEECcCCcC--ccccchhHhhcCccCcEEEccCC-cccccccccccccCCCcEEe
Q 044158 409 LTISFNAFNGSIPSS-FGD-MNSLIYLDLSNNQL--TGEIPEHLAMGCFNLEYLLLSNN-SLQGQLFSKKINLTKLKRLN 483 (892)
Q Consensus 409 L~L~~n~~~~~~p~~-~~~-l~~L~~L~L~~n~l--~~~i~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 483 (892)
|+++.|.+....... +.. -++|+.|+|+++.- ...--+.+...+++|..|||+.| .++......|..++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 777777654322111 111 13566666666521 11111122234555666665544 23332333344445555555
Q ss_pred ecCcc
Q 044158 484 LDGNH 488 (892)
Q Consensus 484 L~~n~ 488 (892)
++.|-
T Consensus 345 lsRCY 349 (419)
T KOG2120|consen 345 LSRCY 349 (419)
T ss_pred hhhhc
Confidence 55543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.34 E-value=1.5e-08 Score=110.46 Aligned_cols=198 Identities=22% Similarity=0.174 Sum_probs=125.6
Q ss_pred CCCccEEEccCCcCCCCC-chhhhhcCCCCcEEECcCCcCCccCchhccCC-CCCcEEECcCCcCc----------cccc
Q 044158 378 RKNIIALDISYNKLQGHI-PVEIGKVLPNLGFLTISFNAFNGSIPSSFGDM-NSLIYLDLSNNQLT----------GEIP 445 (892)
Q Consensus 378 ~~~L~~L~l~~n~l~~~i-~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l-~~L~~L~L~~n~l~----------~~i~ 445 (892)
+++++.|.+-.-.-.+.. |..++. +.+|+.|.+.+|.+... ..+..+ ..|++|. .+|.+. |.+.
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifp-F~sLr~LElrg~~L~~~--~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ 158 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFP-FRSLRVLELRGCDLSTA--KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDIS 158 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceecc-ccceeeEEecCcchhhh--hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccc
Confidence 344455554433222222 556665 78999999999887631 111111 1233332 122221 1111
Q ss_pred hhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCC
Q 044158 446 EHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNIS 525 (892)
Q Consensus 446 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 525 (892)
.... .-.|...+.++|.+. .....+.-++.|+.|+|++|+++.. +.+..|++|++|||+.|.+....--....+.
T Consensus 159 ns~~--Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~ 233 (1096)
T KOG1859|consen 159 NSPV--WNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK 233 (1096)
T ss_pred cchh--hhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh
Confidence 1110 125777788888877 3445666788899999999998754 3788889999999999988743332334444
Q ss_pred CCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccC
Q 044158 526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN 587 (892)
Q Consensus 526 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 587 (892)
|..|.+++|.++.. ..+.++.+|+.||+++|-+.+..--..+..+..|+.|+|.+|.+-
T Consensus 234 -L~~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 234 -LQLLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred -heeeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88899999988743 357788888999999998876544445666778888888888764
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=8.1e-08 Score=93.93 Aligned_cols=65 Identities=17% Similarity=0.219 Sum_probs=37.7
Q ss_pred CCCCCEEEccCCcCcCCC-CCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCc
Q 044158 354 NTNLRSIILANNSLSGPF-RLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNG 418 (892)
Q Consensus 354 ~~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~ 418 (892)
++++..+.+..|.+.... ...+..++.+..|+|+.++|...-..+..+.++.|+.|.++++.+.+
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 456666677777654322 22334455566677777776644444444456777777777776553
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.29 E-value=2e-08 Score=109.42 Aligned_cols=128 Identities=26% Similarity=0.275 Sum_probs=84.2
Q ss_pred CCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCc
Q 044158 127 NLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQ 206 (892)
Q Consensus 127 ~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~ 206 (892)
.|.+.+.++|.+..+ ...+.-++.|+.|+|++|+++.. +.+..+++|++|||++|.+...... ....+. |+
T Consensus 165 ~L~~a~fsyN~L~~m--D~SLqll~ale~LnLshNk~~~v----~~Lr~l~~LkhLDlsyN~L~~vp~l--~~~gc~-L~ 235 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLM--DESLQLLPALESLNLSHNKFTKV----DNLRRLPKLKHLDLSYNCLRHVPQL--SMVGCK-LQ 235 (1096)
T ss_pred hHhhhhcchhhHHhH--HHHHHHHHHhhhhccchhhhhhh----HHHHhcccccccccccchhcccccc--chhhhh-he
Confidence 456666677776654 44566677777778887777754 4667777777777777777654333 223333 77
Q ss_pred EEEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCcccc
Q 044158 207 ELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ 265 (892)
Q Consensus 207 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 265 (892)
.|.+++|.++.. ..+.++++|+.||++.|-+.+.-....+..+..|+.|.|.+|.+-
T Consensus 236 ~L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 236 LLNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeeecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 777777766533 235677777777777777766444455666677777777777654
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.11 E-value=6.1e-07 Score=86.79 Aligned_cols=218 Identities=22% Similarity=0.233 Sum_probs=103.5
Q ss_pred CCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCC---CCc-------ccccccCCCCCCEEecCCcccccCC
Q 044158 48 FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSF---NNS-------VLSSLAGLSSLKNLSLAYNRLEGSI 117 (892)
Q Consensus 48 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i---~~~-------~~~~l~~l~~L~~L~Ls~n~l~~~i 117 (892)
+..+..+|||+|.|..-.....-..+.+-++|+..++|.--. .+. +..++.+|++|+..+||.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 445555666666554322211122344455555555554311 111 1233445666666666666554333
Q ss_pred Ch---hhhcCCCCCCEEeCCCCCCCCcccc------------ccccCCCCCcEEeCCCCcCCCCccc--cccccCCCCCC
Q 044158 118 NI---EELDSLSNLEGLDMSDNEIDNLVVP------------KDYRGLRKLRFLDLSGLRIRDGSKV--LHSIGSFPSLK 180 (892)
Q Consensus 118 ~~---~~l~~l~~L~~L~L~~n~i~~~~~~------------~~~~~l~~L~~L~L~~n~i~~~~~~--~~~l~~l~~L~ 180 (892)
|. ..+++-+.|++|.+++|.+-.+... .....-|.|+......|++...... ...+.....|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 32 2344556666666666654322110 1123446677777777776654221 12233345677
Q ss_pred EEECCCCCCCCccC---CcccccCCCCCcEEEccCCcCccCcc----ccccCCCCCcEEeCCCCCcccccCCCcc-----
Q 044158 181 TLYLKSNNFAKTVT---TTQGLCELAHLQELYIDHNDFIGSLP----WCLANLTSLRVLHVPDNQLTENLSSSPL----- 248 (892)
Q Consensus 181 ~L~L~~n~l~~~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~l~~~~~~~~l----- 248 (892)
++.+..|.+...-. ....+..+.+|+.||+.+|.++-... ..+..-+.|+.|.+.+|-++..-....+
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 77777765532200 01133455667777777776653322 2233334566666666655432111111
Q ss_pred cccccCcEEeccCcccc
Q 044158 249 MHLTSIELLILSNNHFQ 265 (892)
Q Consensus 249 ~~l~~L~~L~L~~n~l~ 265 (892)
...++|..|...+|...
T Consensus 269 ~~~p~l~~L~~~Yne~~ 285 (388)
T COG5238 269 KFVPNLMPLPGDYNERR 285 (388)
T ss_pred hcCCCccccccchhhhc
Confidence 12345555555555443
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.08 E-value=3.7e-07 Score=88.29 Aligned_cols=243 Identities=18% Similarity=0.152 Sum_probs=164.8
Q ss_pred CcEEEEEcCCCccccc-cccCcccCCCCCCCcEEeCCCCccCCcccc------ccccccCCCCCCCEEeCCCCCCCCccc
Q 044158 22 SRVIAIDLLSLNIASA-LYLNFSLFTPFQQLESLDLSGNNIAGCVEN------EGLEKLSGLSNLKFLDLSHNSFNNSVL 94 (892)
Q Consensus 22 ~~v~~l~L~~~~~~~~-~~~~~s~f~~~~~L~~L~Ls~n~i~~~~~~------~~~~~~~~l~~L~~L~Ls~n~i~~~~~ 94 (892)
..++.+||+|+.+.-. ...-...+++-++|+..++|.-........ -.+.++.+|++|+..+||+|.|....|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 4689999999965321 222234567788999999987543221110 122456899999999999999876655
Q ss_pred c----cccCCCCCCEEecCCcccccCCChhh-------------hcCCCCCCEEeCCCCCCCCccc---cccccCCCCCc
Q 044158 95 S----SLAGLSSLKNLSLAYNRLEGSINIEE-------------LDSLSNLEGLDMSDNEIDNLVV---PKDYRGLRKLR 154 (892)
Q Consensus 95 ~----~l~~l~~L~~L~Ls~n~l~~~i~~~~-------------l~~l~~L~~L~L~~n~i~~~~~---~~~~~~l~~L~ 154 (892)
+ .+++-+.|++|.+++|.+. .+.... ..+-+.|++.....|++..... ...+..-.+|+
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 4 4567899999999999875 333222 2355899999999999875421 12244447999
Q ss_pred EEeCCCCcCCCCcc---ccccccCCCCCCEEECCCCCCCCccC--CcccccCCCCCcEEEccCCcCccCccccc------
Q 044158 155 FLDLSGLRIRDGSK---VLHSIGSFPSLKTLYLKSNNFAKTVT--TTQGLCELAHLQELYIDHNDFIGSLPWCL------ 223 (892)
Q Consensus 155 ~L~L~~n~i~~~~~---~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~~l~~l~~L~~L~L~~n~l~~~~~~~l------ 223 (892)
++.+..|.|..... ....+..+.+|+.|++..|.++..-. ...+++..+.|++|.+.+|-++.....++
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 99999999875311 12334568999999999998764321 22356667789999999998775544332
Q ss_pred cCCCCCcEEeCCCCCcccccCCC------cccccccCcEEeccCcccc
Q 044158 224 ANLTSLRVLHVPDNQLTENLSSS------PLMHLTSIELLILSNNHFQ 265 (892)
Q Consensus 224 ~~l~~L~~L~L~~n~l~~~~~~~------~l~~l~~L~~L~L~~n~l~ 265 (892)
...|+|+.|....|...+.+... .-..+|-|..|.+.+|++.
T Consensus 269 ~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 269 KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 23588999999998876543221 1134666777777777665
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.94 E-value=1.7e-05 Score=73.85 Aligned_cols=84 Identities=29% Similarity=0.388 Sum_probs=39.5
Q ss_pred CCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEe
Q 044158 78 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLD 157 (892)
Q Consensus 78 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 157 (892)
....+||++|.+.. ...|.+++.|.+|.|++|+|+ .|...--.-+++|+.|.|.+|.|..+..-.-+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 34455555555532 234455555555555555555 344322233344555555555544433222244444555555
Q ss_pred CCCCcCC
Q 044158 158 LSGLRIR 164 (892)
Q Consensus 158 L~~n~i~ 164 (892)
+-+|.++
T Consensus 120 ll~Npv~ 126 (233)
T KOG1644|consen 120 LLGNPVE 126 (233)
T ss_pred ecCCchh
Confidence 5444443
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.91 E-value=7.2e-07 Score=77.24 Aligned_cols=113 Identities=23% Similarity=0.299 Sum_probs=65.8
Q ss_pred CCcEEECCCCcccCCCcccc-cCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEe
Q 044158 526 FLDAIIMPDNHLEGPIPSEF-CQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLI 604 (892)
Q Consensus 526 ~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 604 (892)
.|+..+|++|.+.. .|..| ..++.++.|++++|.++. +|..+..++.|+.|+++.|.+. ..|..+..+.+|-.|+
T Consensus 54 el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 54 ELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred eEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 34444555555543 23333 334566677777777763 4556777777777777777776 4566666677777777
Q ss_pred cccccccccCCccccCCCCCCEEEcCCCcCCCCCCcccc
Q 044158 605 LANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLD 643 (892)
Q Consensus 605 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~ 643 (892)
..+|.+. .+|..+..-......++.++++.+.-|..+.
T Consensus 130 s~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 130 SPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQ 167 (177)
T ss_pred CCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccc
Confidence 7777766 3444333323333445566777665554433
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.91 E-value=4.5e-07 Score=93.24 Aligned_cols=110 Identities=18% Similarity=0.134 Sum_probs=58.3
Q ss_pred hhhcCCCCcEEECcCCcCCcc--CchhccCCCCCcEEECcCCcCccccc----hhHhhcCccCcEEEccCCccc-ccccc
Q 044158 399 IGKVLPNLGFLTISFNAFNGS--IPSSFGDMNSLIYLDLSNNQLTGEIP----EHLAMGCFNLEYLLLSNNSLQ-GQLFS 471 (892)
Q Consensus 399 ~~~~l~~L~~L~L~~n~~~~~--~p~~~~~l~~L~~L~L~~n~l~~~i~----~~~~~~~~~L~~L~L~~n~l~-~~~~~ 471 (892)
++.+.+.|+.+++..+..... +...-.+++.|+.+.++++.....-. .....+...|+.+.|+++... ....+
T Consensus 341 l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 341 LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence 444456666666666643211 11112356667777777664321110 011123456777888877543 33445
Q ss_pred cccccCCCcEEeecCccCcCC--CCcccccCCCCcEEEc
Q 044158 472 KKINLTKLKRLNLDGNHFIGG--IPESLSNCSSLQGLYI 508 (892)
Q Consensus 472 ~~~~l~~L~~L~L~~n~~~~~--~~~~~~~l~~L~~L~L 508 (892)
.+..+++|+.+++.+++-... +...-.+++++++.-+
T Consensus 421 ~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 421 HLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred HHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 566788899888888864322 1122345666665443
No 56
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.78 E-value=2.1e-05 Score=55.34 Aligned_cols=36 Identities=39% Similarity=0.660 Sum_probs=16.5
Q ss_pred CCCEEEccCccCCccccccccCCCCCCEEECCCCcCc
Q 044158 723 RIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT 759 (892)
Q Consensus 723 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 759 (892)
+|++|++++|+|+ .+|..+++|++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3445555555554 33334455555555555555444
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.77 E-value=5.6e-06 Score=95.83 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=8.9
Q ss_pred CCCCcEEeCCCCCccc
Q 044158 226 LTSLRVLHVPDNQLTE 241 (892)
Q Consensus 226 l~~L~~L~L~~n~l~~ 241 (892)
+|+|+.||.+++.+.+
T Consensus 249 LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 249 LPELRFLDCSGTDINE 264 (699)
T ss_pred CccccEEecCCcchhH
Confidence 4555555555555544
No 58
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=8.1e-05 Score=79.23 Aligned_cols=76 Identities=13% Similarity=0.107 Sum_probs=54.4
Q ss_pred ccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccc-cccccCCccccCCCC
Q 044158 545 FCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANN-NFEGEVPLRLCQLQK 623 (892)
Q Consensus 545 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~ 623 (892)
+..+.+++.|++++|.++.+ | .-..+|++|.+++|.-...+|+.+. ++|+.|++++| .+. .+|. +
T Consensus 48 ~~~~~~l~~L~Is~c~L~sL--P---~LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------s 113 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESL--P---VLPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------S 113 (426)
T ss_pred HHHhcCCCEEEeCCCCCccc--C---CCCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------c
Confidence 44568899999999988864 3 1235799999998654456776553 58999999998 444 4553 5
Q ss_pred CCEEEcCCCcC
Q 044158 624 LRLLDLSHNNF 634 (892)
Q Consensus 624 L~~L~Ls~N~l 634 (892)
|+.|+++++..
T Consensus 114 Le~L~L~~n~~ 124 (426)
T PRK15386 114 VRSLEIKGSAT 124 (426)
T ss_pred cceEEeCCCCC
Confidence 77777776654
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.75 E-value=5e-05 Score=70.87 Aligned_cols=130 Identities=25% Similarity=0.270 Sum_probs=92.4
Q ss_pred EEEEEcCCCccccccccCcccCCCCCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCC
Q 044158 24 VIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSL 103 (892)
Q Consensus 24 v~~l~L~~~~~~~~~~~~~s~f~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L 103 (892)
=++++|.+.++.....+- .-..+...+||+.|++... ..|..++.|..|.|++|.|+.+.|.--..+++|
T Consensus 21 e~e~~LR~lkip~ienlg----~~~d~~d~iDLtdNdl~~l------~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l 90 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLG----ATLDQFDAIDLTDNDLRKL------DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNL 90 (233)
T ss_pred ccccccccccccchhhcc----ccccccceecccccchhhc------ccCCCccccceEEecCCcceeeccchhhhcccc
Confidence 345666665443222110 1244667899999998654 348899999999999999998777666678899
Q ss_pred CEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccc--cccccCCCCCcEEeCCCCcC
Q 044158 104 KNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVV--PKDYRGLRKLRFLDLSGLRI 163 (892)
Q Consensus 104 ~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~--~~~~~~l~~L~~L~L~~n~i 163 (892)
..|.|.+|.+..--....+..+++|++|.+-+|.++...- ...+..+++|+.||+.....
T Consensus 91 ~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 91 KTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 9999999987632233468889999999999998876421 12356677777777766544
No 60
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.73 E-value=2.6e-05 Score=54.87 Aligned_cols=37 Identities=38% Similarity=0.688 Sum_probs=32.4
Q ss_pred CCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccc
Q 044158 746 RQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783 (892)
Q Consensus 746 ~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 783 (892)
++|++|++++|+|+ .+|..+.++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 47999999999999 67878999999999999999987
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.62 E-value=0.00022 Score=76.02 Aligned_cols=54 Identities=22% Similarity=0.177 Sum_probs=25.6
Q ss_pred CCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCC
Q 044158 403 LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 463 (892)
Q Consensus 403 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n 463 (892)
+.+++.|++++|.++ .+|. -.++|++|.++++.-...+|..+ ..+|+.|++++|
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~C 104 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHC 104 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCc
Confidence 456666666666555 2331 12246666665542222444322 234444554444
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.58 E-value=3.7e-05 Score=89.14 Aligned_cols=155 Identities=21% Similarity=0.237 Sum_probs=104.9
Q ss_pred CCCCCEEeCCCCCC-CCccccccc-CCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCC
Q 044158 76 LSNLKFLDLSHNSF-NNSVLSSLA-GLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKL 153 (892)
Q Consensus 76 l~~L~~L~Ls~n~i-~~~~~~~l~-~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L 153 (892)
-.+|++||+++... ...-+..++ .+|+|++|.+++-.+...=-.....++++|..||+|+.+++.+ ..++++++|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccH
Confidence 36899999988753 323344444 6899999999886654210012567889999999999998876 348899999
Q ss_pred cEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCC----cccccCCCCCcEEEccCCcCccCcccc-ccCCCC
Q 044158 154 RFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTT----TQGLCELAHLQELYIDHNDFIGSLPWC-LANLTS 228 (892)
Q Consensus 154 ~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~----~~~l~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~ 228 (892)
+.|.+.+-.+.... ....+..+++|++||+|.......... .+.-..+|+|+.||.+++.+...+-+. +...++
T Consensus 198 q~L~mrnLe~e~~~-~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQ-DLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPN 276 (699)
T ss_pred HHHhccCCCCCchh-hHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCcc
Confidence 99999988887632 234567799999999988765433210 112234889999999998876554333 233455
Q ss_pred CcEEeC
Q 044158 229 LRVLHV 234 (892)
Q Consensus 229 L~~L~L 234 (892)
|+.+..
T Consensus 277 L~~i~~ 282 (699)
T KOG3665|consen 277 LQQIAA 282 (699)
T ss_pred Hhhhhh
Confidence 555543
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.49 E-value=0.00019 Score=65.34 Aligned_cols=87 Identities=16% Similarity=0.145 Sum_probs=31.8
Q ss_pred chhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccC
Q 044158 347 PSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGD 426 (892)
Q Consensus 347 p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 426 (892)
+...|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +. .++...+..+++++.+.+.. .+.......|..
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~ 79 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN 79 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-cccccccccccc
Confidence 334455566666666553 343333444444444555555443 32 34444444344445444433 222222333444
Q ss_pred CCCCcEEECcC
Q 044158 427 MNSLIYLDLSN 437 (892)
Q Consensus 427 l~~L~~L~L~~ 437 (892)
+++|+.+++..
T Consensus 80 ~~~l~~i~~~~ 90 (129)
T PF13306_consen 80 CTNLKNIDIPS 90 (129)
T ss_dssp -TTECEEEETT
T ss_pred cccccccccCc
Confidence 44444444433
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.44 E-value=5.6e-05 Score=73.89 Aligned_cols=89 Identities=28% Similarity=0.367 Sum_probs=36.6
Q ss_pred ccCCCCCCEEecCCc--ccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCcccc-ccc
Q 044158 97 LAGLSSLKNLSLAYN--RLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVL-HSI 173 (892)
Q Consensus 97 l~~l~~L~~L~Ls~n--~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~-~~l 173 (892)
|..+++|++|.++.| ++.+.++. ....+++|++|++++|+|..+.-...+..+.+|..|++.+|..+.....- ..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHH
Confidence 334444444444444 22222222 22333444444444444443221122344445555555555444321111 223
Q ss_pred cCCCCCCEEECCC
Q 044158 174 GSFPSLKTLYLKS 186 (892)
Q Consensus 174 ~~l~~L~~L~L~~ 186 (892)
.-+++|++|+-..
T Consensus 140 ~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 140 LLLPSLKYLDGCD 152 (260)
T ss_pred HHhhhhccccccc
Confidence 4456666665443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.43 E-value=0.00024 Score=64.74 Aligned_cols=79 Identities=25% Similarity=0.306 Sum_probs=26.6
Q ss_pred CCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEE
Q 044158 403 LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRL 482 (892)
Q Consensus 403 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 482 (892)
+++|+.+.+.. .+.......|.++++|+.+++.++ +. .++...|.++.+++.+.+.+ .+.......|..+++|+.+
T Consensus 11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 34444444432 233333334444444444444442 33 44444444444444444433 2222222333344444444
Q ss_pred eec
Q 044158 483 NLD 485 (892)
Q Consensus 483 ~L~ 485 (892)
++.
T Consensus 87 ~~~ 89 (129)
T PF13306_consen 87 DIP 89 (129)
T ss_dssp EET
T ss_pred ccC
Confidence 443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.23 E-value=0.00013 Score=71.47 Aligned_cols=106 Identities=27% Similarity=0.350 Sum_probs=48.0
Q ss_pred CCCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCC--CCCCcccccccCCCCCCEEecCCcccccCCChhhhcC
Q 044158 47 PFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHN--SFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDS 124 (892)
Q Consensus 47 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~ 124 (892)
.+..|+.|++.+..++.. ..|..+++|++|.+|.| .+.+.++.....+++|++|++++|++.-.-....+..
T Consensus 41 ~~~~le~ls~~n~gltt~------~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~ 114 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL------TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKE 114 (260)
T ss_pred cccchhhhhhhccceeec------ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhh
Confidence 344444444444444322 12445555555555555 3443333333444555555555555541101123444
Q ss_pred CCCCCEEeCCCCCCCCccc--cccccCCCCCcEEeC
Q 044158 125 LSNLEGLDMSDNEIDNLVV--PKDYRGLRKLRFLDL 158 (892)
Q Consensus 125 l~~L~~L~L~~n~i~~~~~--~~~~~~l~~L~~L~L 158 (892)
+.+|..|++.+|..+...- ...|.-+++|++|+=
T Consensus 115 l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 115 LENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 5555555555555443211 112444455555443
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=5.2e-05 Score=74.07 Aligned_cols=82 Identities=27% Similarity=0.374 Sum_probs=36.0
Q ss_pred CCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCC-hhhhcCCC
Q 044158 48 FQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSIN-IEELDSLS 126 (892)
Q Consensus 48 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~-~~~l~~l~ 126 (892)
+.+.+.|+.-++.++.+ ..+.+++.|++|.||-|+|+. .+.+.+|++|+.|+|..|.|. ++. ..-+.+++
T Consensus 18 l~~vkKLNcwg~~L~DI------sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~-sldEL~YLknlp 88 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI------SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLP 88 (388)
T ss_pred HHHhhhhcccCCCccHH------HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCc
Confidence 33444455555544322 123445555555555555543 233445555555555555443 221 11234444
Q ss_pred CCCEEeCCCCCC
Q 044158 127 NLEGLDMSDNEI 138 (892)
Q Consensus 127 ~L~~L~L~~n~i 138 (892)
+|+.|-|..|..
T Consensus 89 sLr~LWL~ENPC 100 (388)
T KOG2123|consen 89 SLRTLWLDENPC 100 (388)
T ss_pred hhhhHhhccCCc
Confidence 444444444443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=7.9e-05 Score=72.81 Aligned_cols=84 Identities=27% Similarity=0.279 Sum_probs=51.5
Q ss_pred CCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCC
Q 044158 74 SGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKL 153 (892)
Q Consensus 74 ~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L 153 (892)
+.+.+.+.|++-+|.++++ .-..+++.|+.|.||-|.|+ ++. .+..|++|++|+|..|.|.++.-...+.++++|
T Consensus 16 sdl~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred hHHHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 3455667777777777652 33456777777777777766 333 466677777777777776665333334555555
Q ss_pred cEEeCCCCc
Q 044158 154 RFLDLSGLR 162 (892)
Q Consensus 154 ~~L~L~~n~ 162 (892)
+.|.|..|.
T Consensus 91 r~LWL~ENP 99 (388)
T KOG2123|consen 91 RTLWLDENP 99 (388)
T ss_pred hhHhhccCC
Confidence 555555543
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.58 E-value=0.00039 Score=79.76 Aligned_cols=65 Identities=31% Similarity=0.258 Sum_probs=30.5
Q ss_pred CCCCCCEEecCCcccccCCChhhhcC-CCCCCEEeCCCCC-CCCccccccccCCCCCcEEeCCCCcC
Q 044158 99 GLSSLKNLSLAYNRLEGSINIEELDS-LSNLEGLDMSDNE-IDNLVVPKDYRGLRKLRFLDLSGLRI 163 (892)
Q Consensus 99 ~l~~L~~L~Ls~n~l~~~i~~~~l~~-l~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~L~L~~n~i 163 (892)
.+++|+.|+++++...+.+....+.. +++|++|.+.+|. +++........+++.|++|+++.+..
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 44555555555554211222222222 5555555555554 44443333344555555555555544
No 70
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.35 E-value=0.0008 Score=77.22 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=18.6
Q ss_pred ccEEEccCCccCcc-CChhhhc-CCCCCEEeccccccc
Q 044158 576 LLTLDLCNNRLNGN-IPNWMGR-LSQLRYLILANNNFE 611 (892)
Q Consensus 576 L~~L~L~~n~l~~~-~p~~~~~-l~~L~~L~L~~n~l~ 611 (892)
++.|+++.+..... .-..... +..++.+++.++...
T Consensus 403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred cceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 67777777654311 1111122 556666777666543
No 71
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=95.71 E-value=0.0048 Score=43.25 Aligned_cols=17 Identities=47% Similarity=1.116 Sum_probs=10.4
Q ss_pred CCCCC-CCCCcccceeEec
Q 044158 1 WVDES-YSDCCQWQSVLCN 18 (892)
Q Consensus 1 w~~~~-~~~~c~w~gv~c~ 18 (892)
|+ .. .++||.|.||+|+
T Consensus 26 W~-~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 26 WN-PSSDSDPCSWSGVTCD 43 (43)
T ss_dssp ---TT--S-CCCSTTEEE-
T ss_pred CC-CcCCCCCeeeccEEeC
Confidence 56 33 3799999999996
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.48 E-value=0.0045 Score=36.04 Aligned_cols=12 Identities=58% Similarity=0.744 Sum_probs=5.2
Q ss_pred CCEEEccCccCC
Q 044158 724 IHTLNLSRNNLT 735 (892)
Q Consensus 724 L~~L~Ls~N~l~ 735 (892)
|+.|||++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 73
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.32 E-value=0.0081 Score=34.95 Aligned_cols=19 Identities=58% Similarity=0.726 Sum_probs=10.6
Q ss_pred CCEEECCCCcCcccCCcccc
Q 044158 748 VESLDLSYNNLTGKIPPRLV 767 (892)
Q Consensus 748 L~~LdLs~N~l~g~ip~~l~ 767 (892)
|++|||++|+++ .+|.+|.
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555666666665 5555443
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.05 E-value=0.00078 Score=74.92 Aligned_cols=186 Identities=25% Similarity=0.265 Sum_probs=90.3
Q ss_pred CCEEeCCCCCCCCc----ccccccCCCCCCEEecCCcccccCCChh----hhcCC-CCCCEEeCCCCCCCCccc---ccc
Q 044158 79 LKFLDLSHNSFNNS----VLSSLAGLSSLKNLSLAYNRLEGSINIE----ELDSL-SNLEGLDMSDNEIDNLVV---PKD 146 (892)
Q Consensus 79 L~~L~Ls~n~i~~~----~~~~l~~l~~L~~L~Ls~n~l~~~i~~~----~l~~l-~~L~~L~L~~n~i~~~~~---~~~ 146 (892)
+.+|.|.+|.+... +...+...+.|..|++++|.+.. -... .+... ..|++|++..|.++.... ...
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~-~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGD-EGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCcc-HhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 55555555555432 22233445555555555555441 1110 11111 334555555555544321 122
Q ss_pred ccCCCCCcEEeCCCCcCCCCc--ccccccc----CCCCCCEEECCCCCCCCcc--CCcccccCCCC-CcEEEccCCcCcc
Q 044158 147 YRGLRKLRFLDLSGLRIRDGS--KVLHSIG----SFPSLKTLYLKSNNFAKTV--TTTQGLCELAH-LQELYIDHNDFIG 217 (892)
Q Consensus 147 ~~~l~~L~~L~L~~n~i~~~~--~~~~~l~----~l~~L~~L~L~~n~l~~~~--~~~~~l~~l~~-L~~L~L~~n~l~~ 217 (892)
+.....++.++++.|.+.... .+...+. ...++++|++++|.++... .....+...++ +..|++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 344555555666655553210 0112222 3556666777666654211 11112333444 5567777776654
Q ss_pred C----ccccccCC-CCCcEEeCCCCCcccccC---CCcccccccCcEEeccCcccc
Q 044158 218 S----LPWCLANL-TSLRVLHVPDNQLTENLS---SSPLMHLTSIELLILSNNHFQ 265 (892)
Q Consensus 218 ~----~~~~l~~l-~~L~~L~L~~n~l~~~~~---~~~l~~l~~L~~L~L~~n~l~ 265 (892)
. ....+..+ ..++.++++.|.+++.-. ...+..++.++++.++.|.+.
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3 22334444 567788888887765220 123445667888888888665
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.99 E-value=0.12 Score=27.75 Aligned_cols=11 Identities=55% Similarity=0.767 Sum_probs=3.2
Q ss_pred CCEEECCCCcC
Q 044158 748 VESLDLSYNNL 758 (892)
Q Consensus 748 L~~LdLs~N~l 758 (892)
|+.|++++|+|
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 33344444333
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=89.98 E-value=0.0042 Score=69.24 Aligned_cols=190 Identities=26% Similarity=0.246 Sum_probs=126.2
Q ss_pred CcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCccccc----ccCC-CCCCEEecCCcccccC----CChhh
Q 044158 51 LESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSS----LAGL-SSLKNLSLAYNRLEGS----INIEE 121 (892)
Q Consensus 51 L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~----l~~l-~~L~~L~Ls~n~l~~~----i~~~~ 121 (892)
+..|.|.+|.+..-....-...+...++|..|++++|.+.+..... +... ..|++|++..|.+++. +. ..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~-~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLA-AV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHH-HH
Confidence 7788888888765443333455677888888999998887543332 3333 5677788888877632 22 24
Q ss_pred hcCCCCCCEEeCCCCCCCCcc---ccccc----cCCCCCcEEeCCCCcCCCCc--cccccccCCCC-CCEEECCCCCCCC
Q 044158 122 LDSLSNLEGLDMSDNEIDNLV---VPKDY----RGLRKLRFLDLSGLRIRDGS--KVLHSIGSFPS-LKTLYLKSNNFAK 191 (892)
Q Consensus 122 l~~l~~L~~L~L~~n~i~~~~---~~~~~----~~l~~L~~L~L~~n~i~~~~--~~~~~l~~l~~-L~~L~L~~n~l~~ 191 (892)
+.....++.++++.|.+.... ....+ ....++++|.++++.++... .+...+...+. +.+|++..|.+.+
T Consensus 168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d 247 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD 247 (478)
T ss_pred HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence 556788888888888775322 11223 34678899999998887431 12234555566 7779999887753
Q ss_pred c--cCCcccccCC-CCCcEEEccCCcCccCc----cccccCCCCCcEEeCCCCCccc
Q 044158 192 T--VTTTQGLCEL-AHLQELYIDHNDFIGSL----PWCLANLTSLRVLHVPDNQLTE 241 (892)
Q Consensus 192 ~--~~~~~~l~~l-~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~ 241 (892)
. ......+..+ ..+++++++.|.++... ...+..++.++++.+..|.+..
T Consensus 248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 3 1111233444 67899999999987654 3456677899999999999865
No 77
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.05 E-value=0.049 Score=51.53 Aligned_cols=83 Identities=30% Similarity=0.312 Sum_probs=50.6
Q ss_pred CCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhc-CCCCCCEEeCCCCC-CCCccccccccCCCCCcE
Q 044158 78 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELD-SLSNLEGLDMSDNE-IDNLVVPKDYRGLRKLRF 155 (892)
Q Consensus 78 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~-~l~~L~~L~L~~n~-i~~~~~~~~~~~l~~L~~ 155 (892)
.++.+|-+++.|..+..+.+.+++.++.|.+.+|.--+.--.+-++ -.++|+.|++++|. |++.... .+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~-~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLA-CLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHH-HHHHhhhhHH
Confidence 4567777777777777777777778888877776522111111111 23677788888764 5554332 3666677777
Q ss_pred EeCCCC
Q 044158 156 LDLSGL 161 (892)
Q Consensus 156 L~L~~n 161 (892)
|.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 766653
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.63 E-value=0.011 Score=56.74 Aligned_cols=84 Identities=20% Similarity=0.173 Sum_probs=39.6
Q ss_pred CCCCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCC
Q 044158 46 TPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSL 125 (892)
Q Consensus 46 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l 125 (892)
+.++..+.||++.|.+..... .|+.++.|..||++.|.+. ..|..++....++.+++..|..+ ..|. .++..
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~-----n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~-s~~k~ 110 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGK-----NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPK-SQKKE 110 (326)
T ss_pred hccceeeeehhhhhHHHhhcc-----chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCc-ccccc
Confidence 344555555555554432221 2444445555555555544 33445555555555555555444 3343 44444
Q ss_pred CCCCEEeCCCCC
Q 044158 126 SNLEGLDMSDNE 137 (892)
Q Consensus 126 ~~L~~L~L~~n~ 137 (892)
++++++++.++.
T Consensus 111 ~~~k~~e~k~~~ 122 (326)
T KOG0473|consen 111 PHPKKNEQKKTE 122 (326)
T ss_pred CCcchhhhccCc
Confidence 444444444443
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=87.50 E-value=0.56 Score=28.45 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=9.4
Q ss_pred CCCCEEecCCcccccCCChh
Q 044158 101 SSLKNLSLAYNRLEGSINIE 120 (892)
Q Consensus 101 ~~L~~L~Ls~n~l~~~i~~~ 120 (892)
++|++|+|++|.+. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555554 44443
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=87.50 E-value=0.56 Score=28.45 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=9.4
Q ss_pred CCCCEEecCCcccccCCChh
Q 044158 101 SSLKNLSLAYNRLEGSINIE 120 (892)
Q Consensus 101 ~~L~~L~Ls~n~l~~~i~~~ 120 (892)
++|++|+|++|.+. .+|..
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPG 20 (26)
T ss_pred CCCCEEECCCCcCC-cCCHH
Confidence 34555555555554 44443
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.06 E-value=0.024 Score=54.55 Aligned_cols=83 Identities=20% Similarity=0.255 Sum_probs=69.0
Q ss_pred CccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEc
Q 044158 698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTV 777 (892)
Q Consensus 698 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~l 777 (892)
...+.||++.|++. ..-..|.-++.+..|+++.|++. ..|..++.+..+..+++..|.++ ..|.++..++.++++++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 35678999999886 34456777888889999999887 77888888888999999999888 77888999999999999
Q ss_pred cCCccc
Q 044158 778 AHNNLS 783 (892)
Q Consensus 778 s~N~l~ 783 (892)
-.|.+.
T Consensus 119 k~~~~~ 124 (326)
T KOG0473|consen 119 KKTEFF 124 (326)
T ss_pred ccCcch
Confidence 888764
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.97 E-value=0.63 Score=28.22 Aligned_cols=21 Identities=48% Similarity=0.553 Sum_probs=13.7
Q ss_pred CCCcEEECcCCcCccccchhHh
Q 044158 428 NSLIYLDLSNNQLTGEIPEHLA 449 (892)
Q Consensus 428 ~~L~~L~L~~n~l~~~i~~~~~ 449 (892)
++|+.|+|++|++. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 46667777777766 6666554
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.97 E-value=0.63 Score=28.22 Aligned_cols=21 Identities=48% Similarity=0.553 Sum_probs=13.7
Q ss_pred CCCcEEECcCCcCccccchhHh
Q 044158 428 NSLIYLDLSNNQLTGEIPEHLA 449 (892)
Q Consensus 428 ~~L~~L~L~~n~l~~~i~~~~~ 449 (892)
++|+.|+|++|++. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 46667777777766 6666554
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.49 E-value=0.23 Score=47.15 Aligned_cols=81 Identities=20% Similarity=0.158 Sum_probs=35.5
Q ss_pred CcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCC-cccccccCCCCccEEEccCC-ccCccCChhhhcCCCCCEEe
Q 044158 527 LDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR-PLNGAFSKCSYLLTLDLCNN-RLNGNIPNWMGRLSQLRYLI 604 (892)
Q Consensus 527 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L~ 604 (892)
++.++-++..+..+--+.+.+++.++.|.+.+|.--+- -+...-+..++|+.|++++| +|+..--.++..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 34444444444433333444444555555544431110 00000012356666666655 34433334555566666665
Q ss_pred ccc
Q 044158 605 LAN 607 (892)
Q Consensus 605 L~~ 607 (892)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 543
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=82.18 E-value=0.23 Score=29.47 Aligned_cols=13 Identities=54% Similarity=0.792 Sum_probs=5.1
Q ss_pred CCCEEECCCCcCc
Q 044158 747 QVESLDLSYNNLT 759 (892)
Q Consensus 747 ~L~~LdLs~N~l~ 759 (892)
+|+.|||++|+|+
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 4444444444444
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=73.00 E-value=3 Score=25.35 Aligned_cols=14 Identities=43% Similarity=0.638 Sum_probs=9.4
Q ss_pred CCCCEEECCCCcCc
Q 044158 746 RQVESLDLSYNNLT 759 (892)
Q Consensus 746 ~~L~~LdLs~N~l~ 759 (892)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 46677777777665
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.83 E-value=3.5 Score=24.99 Aligned_cols=13 Identities=38% Similarity=0.595 Sum_probs=6.7
Q ss_pred CCCEEECCCCcCc
Q 044158 747 QVESLDLSYNNLT 759 (892)
Q Consensus 747 ~L~~LdLs~N~l~ 759 (892)
+|+.|++++|+|+
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 3455555555555
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=65.05 E-value=34 Score=37.41 Aligned_cols=17 Identities=18% Similarity=0.184 Sum_probs=9.2
Q ss_pred CCCCEEEccCCcCcCCC
Q 044158 355 TNLRSIILANNSLSGPF 371 (892)
Q Consensus 355 ~~L~~L~L~~n~l~~~~ 371 (892)
+.+++++++.|.+....
T Consensus 165 pr~r~~dls~npi~dkv 181 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKV 181 (553)
T ss_pred chhhhhccCCCcccccC
Confidence 44556666666555433
No 89
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=57.55 E-value=4.6 Score=25.01 Aligned_cols=13 Identities=46% Similarity=0.669 Sum_probs=6.4
Q ss_pred CCCEEeCCCCCCC
Q 044158 78 NLKFLDLSHNSFN 90 (892)
Q Consensus 78 ~L~~L~Ls~n~i~ 90 (892)
+|++|||++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4455555555543
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=55.77 E-value=5.8 Score=52.79 Aligned_cols=36 Identities=17% Similarity=0.139 Sum_probs=30.6
Q ss_pred ECCCCcCcccCCccccCCCCCCEEEccCCcccccCC
Q 044158 752 DLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIP 787 (892)
Q Consensus 752 dLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 787 (892)
||++|+|+..-+..|..+++|+.|+|++|++.+...
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 689999997777788889999999999998887655
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=41.56 E-value=12 Score=41.58 Aligned_cols=66 Identities=23% Similarity=0.151 Sum_probs=28.6
Q ss_pred CCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCccccccC--CCCCcEEeCCCCCccc
Q 044158 176 FPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLAN--LTSLRVLHVPDNQLTE 241 (892)
Q Consensus 176 l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~--l~~L~~L~L~~n~l~~ 241 (892)
.+.+..++|++|++.........-...++|+.|+|++|...-....++.+ ...|++|-+.+|++..
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 44555555555554332221111223455666666665211111112222 2345666666666554
No 92
>PF15102 TMEM154: TMEM154 protein family
Probab=34.01 E-value=30 Score=31.28 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=12.0
Q ss_pred EEeehh-hHHHHHHHHHhhhhhhccchhh
Q 044158 842 FYITFT-VSSVIVILGIIGVLWANPYWRH 869 (892)
Q Consensus 842 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 869 (892)
+++.+. +.++++++.+++++++.++||.
T Consensus 59 LmIlIP~VLLvlLLl~vV~lv~~~kRkr~ 87 (146)
T PF15102_consen 59 LMILIPLVLLVLLLLSVVCLVIYYKRKRT 87 (146)
T ss_pred EEEeHHHHHHHHHHHHHHHheeEEeeccc
Confidence 333433 3333333344444444455654
No 93
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=29.17 E-value=26 Score=29.47 Aligned_cols=15 Identities=40% Similarity=0.731 Sum_probs=5.3
Q ss_pred hhHHHHHHHHHhhhh
Q 044158 847 TVSSVIVILGIIGVL 861 (892)
Q Consensus 847 ~~~~~~~~~~~~~~~ 861 (892)
+++.++++.++++++
T Consensus 72 ~vg~~~~v~~lv~~l 86 (96)
T PTZ00382 72 SVAVVAVVGGLVGFL 86 (96)
T ss_pred EeehhhHHHHHHHHH
Confidence 333333333333333
No 94
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=28.44 E-value=42 Score=20.13 Aligned_cols=11 Identities=55% Similarity=0.567 Sum_probs=5.7
Q ss_pred CCCCEEeCCCC
Q 044158 77 SNLKFLDLSHN 87 (892)
Q Consensus 77 ~~L~~L~Ls~n 87 (892)
++|++|+|++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555555
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=25.73 E-value=40 Score=45.58 Aligned_cols=33 Identities=24% Similarity=0.293 Sum_probs=29.9
Q ss_pred EccCccCCccccccccCCCCCCEEECCCCcCcc
Q 044158 728 NLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG 760 (892)
Q Consensus 728 ~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g 760 (892)
||++|+|+...+..|..+++|+.|+|++|.+..
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 689999998888889999999999999998874
No 96
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=25.24 E-value=34 Score=38.28 Aligned_cols=64 Identities=17% Similarity=0.183 Sum_probs=39.8
Q ss_pred cCCCCCcEEEccCCcCccCc--cccccCCCCCcEEeCCCC--CcccccCCCccc--ccccCcEEeccCccccC
Q 044158 200 CELAHLQELYIDHNDFIGSL--PWCLANLTSLRVLHVPDN--QLTENLSSSPLM--HLTSIELLILSNNHFQI 266 (892)
Q Consensus 200 ~~l~~L~~L~L~~n~l~~~~--~~~l~~l~~L~~L~L~~n--~l~~~~~~~~l~--~l~~L~~L~L~~n~l~~ 266 (892)
.+.+.+..++|++|++.... ..--...|+|+.|+|++| .+... ..+. ....|++|-+.+|.+..
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~---~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE---SELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch---hhhhhhcCCCHHHeeecCCcccc
Confidence 35567788888888775331 111233578999999988 44331 2222 23457888888887754
No 97
>PF08093 Toxin_23: Magi 5 toxic peptide family; InterPro: IPR012628 This family consists of toxic peptides (Magi 5) found in the venom of the Hexathelidae spider. Magi 5 is the first spider toxin with binding affinity to site 4 of a mammalian sodium channel and the toxin has an insecticidal effect on larvae, causing paralysis when injected into the larvae.; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1HP3_A 1G9P_A 2GX1_A.
Probab=22.10 E-value=55 Score=20.37 Aligned_cols=10 Identities=50% Similarity=1.351 Sum_probs=7.4
Q ss_pred CCCCCCcccc
Q 044158 4 ESYSDCCQWQ 13 (892)
Q Consensus 4 ~~~~~~c~w~ 13 (892)
.++.|||.|.
T Consensus 10 ssdk~CCg~t 19 (30)
T PF08093_consen 10 SSDKDCCGWT 19 (30)
T ss_dssp SSCCCCCTT-
T ss_pred cCCcccccCc
Confidence 4578999998
No 98
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=21.18 E-value=1.9e+02 Score=32.06 Aligned_cols=68 Identities=22% Similarity=0.239 Sum_probs=33.7
Q ss_pred CCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhcc---CCCCCcEEECcCCcCccccchhH
Q 044158 378 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFG---DMNSLIYLDLSNNQLTGEIPEHL 448 (892)
Q Consensus 378 ~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~---~l~~L~~L~L~~n~l~~~i~~~~ 448 (892)
-+.+++++++.|.+....|..+.. ..--+.++.|..+...-..+. .-..+.+++++.|.....+|..+
T Consensus 164 npr~r~~dls~npi~dkvpihl~~---p~~pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~ 234 (553)
T KOG4242|consen 164 NPRARQHDLSPNPIGDKVPIHLPQ---PGNPLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTL 234 (553)
T ss_pred cchhhhhccCCCcccccCCccccC---CCCccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHH
Confidence 345677777777776665554432 111145555554432111110 11245666666666665565543
Done!