Query 044158
Match_columns 892
No_of_seqs 751 out of 5001
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 20:55:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044158.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044158hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 9.6E-87 3.3E-91 801.6 52.2 691 1-820 33-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.2E-72 7.5E-77 676.7 46.6 657 49-806 50-716 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 3.2E-59 1.1E-63 558.1 50.8 582 77-787 25-626 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 9.2E-58 3.1E-62 545.5 50.1 576 49-763 25-626 (680)
5 3t6q_A CD180 antigen; protein- 100.0 3.1E-53 1.1E-57 499.5 47.8 534 80-787 15-564 (606)
6 3t6q_A CD180 antigen; protein- 100.0 3.2E-53 1.1E-57 499.4 47.4 523 78-763 34-564 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 5.2E-53 1.8E-57 513.6 47.1 560 105-820 8-592 (844)
8 3vq2_A TLR4, TOLL-like recepto 100.0 4.5E-52 1.5E-56 489.6 40.8 536 79-788 13-563 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 9.7E-52 3.3E-56 502.4 39.7 544 52-763 7-564 (844)
10 3vq2_A TLR4, TOLL-like recepto 100.0 2.5E-51 8.4E-56 483.3 41.0 521 49-639 32-562 (606)
11 4eco_A Uncharacterized protein 100.0 2E-49 6.8E-54 465.8 22.4 332 353-783 247-600 (636)
12 2z63_A TOLL-like receptor 4, v 100.0 4.5E-47 1.6E-51 444.0 36.5 501 49-640 28-536 (570)
13 2z63_A TOLL-like receptor 4, v 100.0 3.1E-46 1.1E-50 436.9 39.9 519 79-788 9-536 (570)
14 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-46 6E-51 436.6 34.7 495 9-639 3-514 (549)
15 4ecn_A Leucine-rich repeat pro 100.0 2.8E-46 9.4E-51 444.6 30.7 480 13-611 315-864 (876)
16 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-45 4.1E-50 429.5 34.3 491 129-788 8-515 (549)
17 4eco_A Uncharacterized protein 100.0 7.5E-47 2.6E-51 443.9 18.6 333 420-809 239-602 (636)
18 2z7x_B TOLL-like receptor 1, v 100.0 6.5E-45 2.2E-49 420.0 24.6 351 351-788 111-486 (520)
19 4ecn_A Leucine-rich repeat pro 100.0 5.5E-44 1.9E-48 424.9 29.7 358 389-806 435-839 (876)
20 4g8a_A TOLL-like receptor 4; l 100.0 5.5E-42 1.9E-46 406.8 41.7 540 53-787 35-584 (635)
21 2z7x_B TOLL-like receptor 1, v 100.0 5.8E-43 2E-47 403.7 28.5 458 52-563 3-482 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-41 1.2E-45 400.0 42.0 516 49-636 52-581 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.5E-41 8.5E-46 393.1 26.3 352 351-788 142-515 (562)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.1E-41 1.7E-45 390.5 28.7 466 49-639 31-514 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 5.9E-40 2E-44 372.1 29.4 372 358-788 13-413 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 4.3E-39 1.5E-43 364.9 30.4 358 355-764 30-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 3.2E-39 1.1E-43 362.0 24.1 322 355-789 91-417 (454)
28 1jl5_A Outer protein YOPM; leu 100.0 4.3E-37 1.5E-41 344.7 27.3 384 305-808 12-410 (454)
29 1o6v_A Internalin A; bacterial 100.0 1.3E-35 4.3E-40 336.4 34.5 347 353-785 44-390 (466)
30 2id5_A Lingo-1, leucine rich r 100.0 2.4E-36 8.3E-41 344.2 25.1 346 382-811 14-360 (477)
31 3bz5_A Internalin-J, INLJ; leu 100.0 5.3E-36 1.8E-40 336.1 27.2 358 324-789 36-393 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 4.5E-36 1.6E-40 341.9 25.4 325 431-812 14-338 (477)
33 1o6v_A Internalin A; bacterial 100.0 1.6E-34 5.6E-39 327.3 35.0 349 329-765 45-393 (466)
34 3bz5_A Internalin-J, INLJ; leu 100.0 7.6E-35 2.6E-39 326.8 29.9 317 198-636 37-353 (457)
35 3o6n_A APL1; leucine-rich repe 100.0 2.5E-34 8.7E-39 318.2 27.9 335 378-811 44-378 (390)
36 1ogq_A PGIP-2, polygalacturona 100.0 2.2E-35 7.7E-40 315.0 18.4 258 502-816 51-312 (313)
37 3oja_B Anopheles plasmodium-re 100.0 6.6E-34 2.3E-38 332.2 28.0 335 378-811 50-384 (597)
38 3o6n_A APL1; leucine-rich repe 100.0 6.6E-33 2.2E-37 306.8 25.7 312 427-810 44-355 (390)
39 4fmz_A Internalin; leucine ric 100.0 5.6E-32 1.9E-36 294.6 31.2 304 403-783 43-346 (347)
40 3oja_B Anopheles plasmodium-re 100.0 9.2E-33 3.1E-37 322.5 25.9 312 427-810 50-361 (597)
41 4fmz_A Internalin; leucine ric 100.0 9.3E-32 3.2E-36 292.8 31.0 304 378-759 43-346 (347)
42 1ogq_A PGIP-2, polygalacturona 100.0 2.5E-33 8.5E-38 299.2 16.0 252 478-785 51-307 (313)
43 1z7x_W Ribonuclease inhibitor; 100.0 1.7E-34 5.7E-39 327.9 -0.9 360 379-785 3-413 (461)
44 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-30 5.1E-35 280.9 25.5 82 699-781 242-331 (332)
45 1xku_A Decorin; proteoglycan, 100.0 4.2E-30 1.4E-34 277.3 27.0 269 454-781 53-330 (330)
46 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-33 4.4E-38 320.6 -1.7 306 330-635 3-354 (461)
47 1xku_A Decorin; proteoglycan, 100.0 9E-30 3.1E-34 274.7 27.3 244 379-635 31-276 (330)
48 2ft3_A Biglycan; proteoglycan, 100.0 1.5E-29 5E-34 273.2 26.2 266 478-804 55-330 (332)
49 2z80_A TOLL-like receptor 2, v 100.0 6.4E-29 2.2E-33 270.7 16.6 280 430-788 33-319 (353)
50 2z66_A Variable lymphocyte rec 100.0 1.8E-28 6.2E-33 261.5 18.1 250 481-787 11-265 (306)
51 2z80_A TOLL-like receptor 2, v 100.0 1.6E-28 5.4E-33 267.5 16.0 256 502-811 53-318 (353)
52 3ogk_B Coronatine-insensitive 100.0 7E-30 2.4E-34 299.6 3.6 276 328-606 110-411 (592)
53 2z66_A Variable lymphocyte rec 100.0 6.5E-28 2.2E-32 257.2 17.4 259 477-788 28-292 (306)
54 4fcg_A Uncharacterized protein 100.0 1.2E-27 4.1E-32 256.6 19.1 235 476-783 80-314 (328)
55 3ogk_B Coronatine-insensitive 100.0 8.1E-30 2.8E-34 299.1 1.9 410 324-785 67-528 (592)
56 3zyj_A Leucine-rich repeat-con 99.9 6.3E-27 2.2E-31 262.9 24.0 252 478-787 44-296 (440)
57 4fcg_A Uncharacterized protein 99.9 3.7E-27 1.3E-31 252.8 20.6 236 451-759 79-314 (328)
58 3zyi_A Leucine-rich repeat-con 99.9 1E-26 3.5E-31 262.1 23.9 252 478-787 55-307 (452)
59 3zyj_A Leucine-rich repeat-con 99.9 2.5E-26 8.5E-31 258.0 24.9 249 454-760 44-293 (440)
60 3zyi_A Leucine-rich repeat-con 99.9 2.6E-26 9E-31 258.8 24.9 250 454-761 55-305 (452)
61 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-26 3.6E-31 245.0 17.9 224 382-611 14-238 (285)
62 3o53_A Protein LRIM1, AGAP0063 99.9 5.8E-28 2E-32 258.4 8.0 265 432-788 14-281 (317)
63 1ozn_A Reticulon 4 receptor; N 99.9 9.6E-27 3.3E-31 245.3 17.0 224 407-635 14-238 (285)
64 3g06_A SSPH2 (leucine-rich rep 99.9 1.8E-25 6.2E-30 257.6 26.8 266 404-791 40-305 (622)
65 1wwl_A Monocyte differentiatio 99.9 1.5E-27 5E-32 254.6 8.4 203 426-634 41-265 (312)
66 3g06_A SSPH2 (leucine-rich rep 99.9 1.7E-25 5.9E-30 257.7 26.1 268 380-770 41-308 (622)
67 3o53_A Protein LRIM1, AGAP0063 99.9 4E-27 1.4E-31 251.9 9.8 238 381-635 12-250 (317)
68 3oja_A Leucine-rich immune mol 99.9 5.8E-27 2E-31 265.2 10.9 148 477-635 34-182 (487)
69 1wwl_A Monocyte differentiatio 99.9 2.4E-27 8.2E-32 253.0 7.0 248 378-636 42-310 (312)
70 2p1m_B Transport inhibitor res 99.9 2E-29 6.7E-34 296.1 -10.1 243 8-264 33-301 (594)
71 2p1m_B Transport inhibitor res 99.9 4E-28 1.4E-32 284.9 -2.8 407 325-784 61-520 (594)
72 3oja_A Leucine-rich immune mol 99.9 2.6E-26 9E-31 259.8 10.9 246 500-811 33-286 (487)
73 2z62_A TOLL-like receptor 4, v 99.9 4.8E-24 1.6E-28 223.5 20.5 209 526-788 29-242 (276)
74 2o6q_A Variable lymphocyte rec 99.9 3.5E-23 1.2E-27 215.8 24.3 218 7-266 2-219 (270)
75 1p9a_G Platelet glycoprotein I 99.9 2.6E-23 9.1E-28 218.4 20.4 205 521-785 6-210 (290)
76 2o6q_A Variable lymphocyte rec 99.9 6.6E-23 2.3E-27 213.7 21.7 207 526-788 17-223 (270)
77 2z62_A TOLL-like receptor 4, v 99.9 3.5E-23 1.2E-27 216.8 19.6 228 384-639 12-241 (276)
78 3rfs_A Internalin B, repeat mo 99.9 2.8E-23 9.5E-28 216.7 16.6 186 545-792 59-244 (272)
79 3rfs_A Internalin B, repeat mo 99.9 5.5E-23 1.9E-27 214.5 18.0 225 405-644 20-244 (272)
80 1p9a_G Platelet glycoprotein I 99.9 5.3E-22 1.8E-26 208.5 20.2 203 424-635 6-208 (290)
81 3goz_A Leucine-rich repeat-con 99.9 1.7E-23 5.8E-28 228.2 8.4 20 718-737 280-299 (362)
82 2ca6_A RAN GTPase-activating p 99.9 5E-24 1.7E-28 235.0 3.1 240 496-787 27-320 (386)
83 3goz_A Leucine-rich repeat-con 99.9 8.8E-24 3E-28 230.5 4.9 178 457-635 2-209 (362)
84 4glp_A Monocyte differentiatio 99.9 1.7E-22 5.7E-27 215.4 12.5 144 477-642 91-244 (310)
85 2ast_B S-phase kinase-associat 99.9 3E-23 1E-27 224.4 6.0 234 477-790 70-313 (336)
86 2ca6_A RAN GTPase-activating p 99.9 2.4E-23 8.1E-28 229.6 4.7 237 403-639 31-320 (386)
87 4glp_A Monocyte differentiatio 99.9 3.3E-22 1.1E-26 213.0 13.3 229 501-784 64-308 (310)
88 3m19_A Variable lymphocyte rec 99.9 1.6E-21 5.6E-26 200.7 17.9 212 550-819 15-232 (251)
89 2ast_B S-phase kinase-associat 99.9 7E-23 2.4E-27 221.5 6.7 222 479-780 49-282 (336)
90 1h6u_A Internalin H; cell adhe 99.8 1E-20 3.5E-25 200.9 17.6 58 699-760 174-231 (308)
91 2xwt_C Thyrotropin receptor; s 99.8 5.2E-21 1.8E-25 195.5 14.6 197 404-632 31-236 (239)
92 2xwt_C Thyrotropin receptor; s 99.8 6.5E-21 2.2E-25 194.8 14.7 189 454-646 32-229 (239)
93 3m19_A Variable lymphocyte rec 99.8 5.1E-20 1.7E-24 189.5 19.7 179 455-637 16-194 (251)
94 1h6u_A Internalin H; cell adhe 99.8 3E-20 1E-24 197.2 17.4 191 403-611 40-230 (308)
95 4ay9_X Follicle-stimulating ho 99.8 7.5E-20 2.6E-24 198.2 16.7 242 382-633 12-257 (350)
96 3cvr_A Invasion plasmid antige 99.8 8.5E-20 2.9E-24 207.6 16.6 187 502-769 60-253 (571)
97 2o6s_A Variable lymphocyte rec 99.8 2.2E-19 7.5E-24 179.1 17.6 133 502-635 29-161 (208)
98 4ay9_X Follicle-stimulating ho 99.8 1.4E-19 4.9E-24 196.0 15.1 240 480-781 12-257 (350)
99 3cvr_A Invasion plasmid antige 99.8 2.2E-19 7.6E-24 204.1 16.8 196 478-747 60-255 (571)
100 2o6s_A Variable lymphocyte rec 99.8 2.8E-19 9.7E-24 178.3 15.5 159 454-620 29-187 (208)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 2.6E-18 8.8E-23 172.4 15.1 90 699-788 82-171 (220)
102 2xot_A Amphoterin-induced prot 99.8 1.2E-18 4.2E-23 189.5 12.3 180 551-786 20-205 (361)
103 2v9t_B SLIT homolog 2 protein 99.8 2.8E-18 9.6E-23 172.1 13.9 156 577-787 14-169 (220)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 3.4E-18 1.1E-22 171.6 14.0 115 698-812 57-171 (220)
105 1h6t_A Internalin B; cell adhe 99.8 5.1E-18 1.7E-22 178.3 15.2 171 547-784 44-214 (291)
106 2v9t_B SLIT homolog 2 protein 99.8 5.9E-18 2E-22 169.8 15.0 153 552-760 14-166 (220)
107 1h6t_A Internalin B; cell adhe 99.7 5E-18 1.7E-22 178.3 13.7 188 51-265 26-213 (291)
108 2xot_A Amphoterin-induced prot 99.7 4.2E-18 1.4E-22 185.2 13.4 177 528-760 21-203 (361)
109 1m9s_A Internalin B; cell inva 99.7 3.7E-18 1.3E-22 196.5 13.0 168 454-636 22-189 (605)
110 1m9s_A Internalin B; cell inva 99.7 1.7E-17 5.8E-22 191.1 17.9 189 405-611 22-210 (605)
111 3e6j_A Variable lymphocyte rec 99.7 2.3E-17 8E-22 166.6 16.0 158 575-788 20-177 (229)
112 3e6j_A Variable lymphocyte rec 99.7 2.1E-17 7.2E-22 167.0 15.5 157 550-763 20-176 (229)
113 4ezg_A Putative uncharacterize 99.7 3.5E-17 1.2E-21 161.3 12.0 155 571-784 41-195 (197)
114 1dce_A Protein (RAB geranylger 99.7 1E-18 3.5E-23 200.1 -1.4 196 522-788 346-551 (567)
115 1w8a_A SLIT protein; signaling 99.7 4.2E-17 1.4E-21 159.8 10.3 90 699-788 55-144 (192)
116 4ezg_A Putative uncharacterize 99.7 1.2E-16 4.1E-21 157.4 12.6 151 452-635 43-194 (197)
117 1w8a_A SLIT protein; signaling 99.7 8E-17 2.7E-21 157.8 10.9 132 577-763 11-143 (192)
118 1dce_A Protein (RAB geranylger 99.7 5.2E-19 1.8E-23 202.5 -5.8 122 502-629 442-567 (567)
119 1xeu_A Internalin C; cellular 99.7 6.3E-17 2.2E-21 167.1 10.1 166 455-636 21-186 (263)
120 4b8c_D Glucose-repressible alc 99.7 1.3E-17 4.5E-22 197.2 5.5 155 477-642 173-336 (727)
121 4b8c_D Glucose-repressible alc 99.7 2E-17 6.9E-22 195.6 5.3 183 453-642 173-361 (727)
122 1xeu_A Internalin C; cellular 99.7 1.8E-16 6.3E-21 163.6 10.1 169 404-613 19-187 (263)
123 3sb4_A Hypothetical leucine ri 99.6 3E-16 1E-20 168.3 8.3 284 329-629 24-328 (329)
124 2wfh_A SLIT homolog 2 protein 99.6 1.7E-15 5.9E-20 148.1 12.9 113 699-812 32-144 (193)
125 2ell_A Acidic leucine-rich nuc 99.6 2E-15 7E-20 144.5 11.9 133 477-611 24-160 (168)
126 3sb4_A Hypothetical leucine ri 99.6 8.2E-16 2.8E-20 164.9 9.0 279 354-646 24-321 (329)
127 2je0_A Acidic leucine-rich nuc 99.6 2.3E-15 8E-20 140.8 10.6 129 476-606 16-148 (149)
128 2ell_A Acidic leucine-rich nuc 99.6 4.4E-15 1.5E-19 142.1 11.3 86 698-783 71-160 (168)
129 4fdw_A Leucine rich hypothetic 99.6 3.6E-14 1.2E-18 155.2 19.5 265 354-634 112-382 (401)
130 2wfh_A SLIT homolog 2 protein 99.6 1.1E-14 3.7E-19 142.4 13.7 89 699-787 55-143 (193)
131 2je0_A Acidic leucine-rich nuc 99.6 4E-15 1.4E-19 139.2 9.8 128 598-779 17-149 (149)
132 2o6r_A Variable lymphocyte rec 99.6 1.9E-14 6.3E-19 139.1 13.0 90 699-788 53-142 (177)
133 4fs7_A Uncharacterized protein 99.6 1.6E-13 5.6E-18 150.9 21.9 102 399-506 292-393 (394)
134 4fdw_A Leucine rich hypothetic 99.6 6.5E-14 2.2E-18 153.1 18.4 249 348-611 129-383 (401)
135 4fs7_A Uncharacterized protein 99.5 2.5E-13 8.6E-18 149.4 20.3 146 374-530 248-393 (394)
136 1ds9_A Outer arm dynein; leuci 99.5 4.9E-16 1.7E-20 153.2 -3.8 153 572-783 16-185 (198)
137 2o6r_A Variable lymphocyte rec 99.5 1.8E-13 6.1E-18 132.1 13.6 130 382-516 10-139 (177)
138 3g39_A Variable lymphocyte rec 99.5 1.9E-13 6.6E-18 130.5 10.7 109 700-811 11-119 (170)
139 1a9n_A U2A', U2A'; complex (nu 99.4 2E-13 6.8E-18 131.5 10.5 110 474-587 16-126 (176)
140 3g39_A Variable lymphocyte rec 99.4 4.6E-13 1.6E-17 127.9 11.7 90 699-788 31-120 (170)
141 1a9n_A U2A', U2A'; complex (nu 99.4 2.2E-13 7.5E-18 131.2 9.6 135 495-635 13-153 (176)
142 2r9u_A Variable lymphocyte rec 99.4 5.1E-13 1.7E-17 128.0 10.7 107 701-810 15-121 (174)
143 1ds9_A Outer arm dynein; leuci 99.4 1.9E-15 6.3E-20 149.0 -6.7 132 496-635 43-185 (198)
144 2r9u_A Variable lymphocyte rec 99.4 1.4E-12 4.6E-17 125.0 11.8 90 699-788 34-123 (174)
145 2ifg_A High affinity nerve gro 99.3 9.6E-12 3.3E-16 134.4 10.1 107 702-811 12-120 (347)
146 4gt6_A Cell surface protein; l 99.2 2.5E-10 8.4E-15 125.5 20.7 258 351-634 133-390 (394)
147 4gt6_A Cell surface protein; l 99.2 7.4E-10 2.5E-14 121.6 21.9 263 346-631 54-320 (394)
148 2ifg_A High affinity nerve gro 99.2 3.9E-11 1.3E-15 129.6 9.9 88 699-787 32-120 (347)
149 3un9_A NLR family member X1; l 99.2 1.3E-12 4.3E-17 141.5 -1.9 188 428-635 72-283 (372)
150 3un9_A NLR family member X1; l 99.2 2.2E-12 7.4E-17 139.6 -0.3 113 403-515 71-197 (372)
151 4h09_A Hypothetical leucine ri 98.9 4.3E-08 1.5E-12 107.0 20.8 292 324-632 40-343 (379)
152 4h09_A Hypothetical leucine ri 98.8 1.8E-07 6E-12 102.1 22.0 142 451-598 215-356 (379)
153 2ra8_A Uncharacterized protein 98.8 2.3E-09 8E-14 114.6 4.7 82 698-781 252-341 (362)
154 3rw6_A Nuclear RNA export fact 98.7 1.2E-09 4E-14 110.5 -0.6 85 98-184 167-258 (267)
155 2ra8_A Uncharacterized protein 98.7 8.4E-09 2.9E-13 110.3 5.8 137 496-635 167-320 (362)
156 1io0_A Tropomodulin; LRR prote 98.4 4E-08 1.4E-12 94.7 1.8 65 125-189 92-163 (185)
157 3rw6_A Nuclear RNA export fact 98.3 6.1E-07 2.1E-11 90.6 5.9 67 719-787 167-237 (267)
158 1io0_A Tropomodulin; LRR prote 98.2 3.2E-07 1.1E-11 88.3 2.7 91 545-635 61-164 (185)
159 3e4g_A ATP synthase subunit S, 97.9 3.1E-06 1.1E-10 79.0 1.8 83 78-162 62-150 (176)
160 3e4g_A ATP synthase subunit S, 97.9 2.2E-06 7.6E-11 79.9 0.4 87 49-140 61-154 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00022 7.7E-09 67.7 3.3 65 124-188 96-168 (197)
162 3rfe_A Platelet glycoprotein I 97.0 0.00065 2.2E-08 60.3 5.4 58 725-784 11-69 (130)
163 1pgv_A TMD-1, tropomodulin TMD 96.7 0.0016 5.4E-08 61.9 5.2 42 73-114 66-111 (197)
164 3rfe_A Platelet glycoprotein I 96.6 0.0026 8.8E-08 56.5 6.0 56 702-759 12-68 (130)
165 2lz0_A Uncharacterized protein 54.9 13 0.00043 30.5 4.3 45 89-135 8-52 (100)
166 2lz0_A Uncharacterized protein 39.6 30 0.001 28.2 4.2 39 470-509 13-51 (100)
167 3ox7_P MH027; urokinase-type p 27.5 19 0.00065 19.2 0.6 12 6-17 4-15 (23)
168 2gx1_A Neurotoxin MAGI-5; spid 26.5 28 0.00094 19.9 1.2 13 1-13 7-19 (29)
169 2l9u_A Receptor tyrosine-prote 22.2 49 0.0017 20.4 1.8 22 846-870 12-33 (40)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=9.6e-87 Score=801.65 Aligned_cols=691 Identities=32% Similarity=0.468 Sum_probs=475.6
Q ss_pred CCCCCCCCCcccceeEecCCCCcEEEEEcCCCccccccccCcccCCCCCCCcEEeCCCCccCCccccccccccCCCCCCC
Q 044158 1 WVDESYSDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLK 80 (892)
Q Consensus 1 w~~~~~~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~s~f~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~ 80 (892)
|+ .++|||+|+||+|+ +|||+.|||++..+.|....-+..|.++++|+.++++.+.+...+ ..+.++++|+
T Consensus 33 W~--~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~-----~~~~~l~~L~ 103 (768)
T 3rgz_A 33 WS--SNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSV-----SGFKCSASLT 103 (768)
T ss_dssp CC--TTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECC-----CCCCCCTTCC
T ss_pred CC--CCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCc-----hhhccCCCCC
Confidence 76 46799999999998 699999999998877752212356788899999999988774322 3588999999
Q ss_pred EEeCCCCCCCCcccc--cccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCcccccc--ccCCCCCcEE
Q 044158 81 FLDLSHNSFNNSVLS--SLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKD--YRGLRKLRFL 156 (892)
Q Consensus 81 ~L~Ls~n~i~~~~~~--~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~--~~~l~~L~~L 156 (892)
+|+|++|.+++.+|. .++++++|++|++++|.+.+.+|...+.++++|++|++++|.+++..+... +.++++|++|
T Consensus 104 ~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L 183 (768)
T 3rgz_A 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183 (768)
T ss_dssp EEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEE
T ss_pred EEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEE
Confidence 999999999988888 999999999999999999988777445899999999999999987653321 7889999999
Q ss_pred eCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCccccccCCCCCcEEeCCC
Q 044158 157 DLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPD 236 (892)
Q Consensus 157 ~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 236 (892)
++++|.+.+. . .+..+++|++|++++|.+.+..+. ++.+++|++|++++|.+++.+|..++++++|++|++++
T Consensus 184 ~Ls~n~l~~~--~--~~~~l~~L~~L~Ls~n~l~~~~~~---l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 184 AISGNKISGD--V--DVSRCVNLEFLDVSSNNFSTGIPF---LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256 (768)
T ss_dssp ECCSSEEESC--C--BCTTCTTCCEEECCSSCCCSCCCB---CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCS
T ss_pred ECCCCccccc--C--CcccCCcCCEEECcCCcCCCCCcc---cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCC
Confidence 9999998864 2 237889999999999998876653 78889999999999999988898999999999999999
Q ss_pred CCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCCC
Q 044158 237 NQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGD 316 (892)
Q Consensus 237 n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 316 (892)
|.+++.+ +.. .+++|++|++++|.+++.++......++
T Consensus 257 n~l~~~~-~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~--------------------------------------- 294 (768)
T 3rgz_A 257 NQFVGPI-PPL--PLKSLQYLSLAENKFTGEIPDFLSGACD--------------------------------------- 294 (768)
T ss_dssp SCCEESC-CCC--CCTTCCEEECCSSEEEESCCCCSCTTCT---------------------------------------
T ss_pred CcccCcc-Ccc--ccCCCCEEECcCCccCCccCHHHHhhcC---------------------------------------
Confidence 9888755 222 6777888888887776544432222223
Q ss_pred CCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCC-CCCCCCccEEEccCCcCCCCC
Q 044158 317 SDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLP-TRSRKNIIALDISYNKLQGHI 395 (892)
Q Consensus 317 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~-~~~~~~L~~L~l~~n~l~~~i 395 (892)
+|++|++++|.+.+.+|.. ++++++|++|++++|.+++..+.. +..+++|++|++++|++++.+
T Consensus 295 --------------~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~ 359 (768)
T 3rgz_A 295 --------------TLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL 359 (768)
T ss_dssp --------------TCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECC
T ss_pred --------------cCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccc
Confidence 3333344444443333333 334444444444444443322222 334444444444444444444
Q ss_pred chhhhhcCCCCcEEECcCCcCCccCchhccC--CCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccc
Q 044158 396 PVEIGKVLPNLGFLTISFNAFNGSIPSSFGD--MNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKK 473 (892)
Q Consensus 396 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~--l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 473 (892)
|..+....++|++|++++|.+.+.+|..+.. +++|++|++++|++++.+|..+ ..+++|++|++++|++++.+|..+
T Consensus 360 p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~~p~~l 438 (768)
T 3rgz_A 360 PESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-SNCSELVSLHLSFNYLSGTIPSSL 438 (768)
T ss_dssp CTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-GGCTTCCEEECCSSEEESCCCGGG
T ss_pred cHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH-hcCCCCCEEECcCCcccCcccHHH
Confidence 5444442225555555555555544444444 4455555555555554444443 245555555555555555555555
Q ss_pred cccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcE
Q 044158 474 INLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEI 553 (892)
Q Consensus 474 ~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 553 (892)
..+++|+.|++++|++.+.+|..+..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|.+++.+++|++
T Consensus 439 ~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 518 (768)
T 3rgz_A 439 GSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518 (768)
T ss_dssp GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCE
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred EeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccc----------------------ccc
Q 044158 554 LDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANN----------------------NFE 611 (892)
Q Consensus 554 L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n----------------------~l~ 611 (892)
|++++|++++ .+|..+..+++|++|++++|+++|.+|..+.....+..+++..+ .+.
T Consensus 519 L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (768)
T 3rgz_A 519 LKLSNNSFSG-NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597 (768)
T ss_dssp EECCSSCCEE-ECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred EECCCCcccC-cCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence 5555555554 44555555555555555555555555555444433333322221 122
Q ss_pred ccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccc
Q 044158 612 GEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYT 691 (892)
Q Consensus 612 ~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (892)
+..+..+..++.++.++++.|.++|.+|..+..
T Consensus 598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~----------------------------------------------- 630 (768)
T 3rgz_A 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDN----------------------------------------------- 630 (768)
T ss_dssp TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSS-----------------------------------------------
T ss_pred cccchhhhccccccccccccceecccCchhhhc-----------------------------------------------
Confidence 333444444455555555555555555544432
Q ss_pred cCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCC
Q 044158 692 YKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNA 771 (892)
Q Consensus 692 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~ 771 (892)
++.|+.||+++|+++|.+|.+++++++|+.|+|++|+++|.+|..|+++++|+.||||+|+++|.||..+.++++
T Consensus 631 -----l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~ 705 (768)
T 3rgz_A 631 -----NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705 (768)
T ss_dssp -----SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCC
T ss_pred -----cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCC
Confidence 447899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEccCCcccccCCccccccCCCCcccccCCCCCCCCCCCCCCCCCC
Q 044158 772 LAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKICNENR 820 (892)
Q Consensus 772 L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l~~~c~~~~ 820 (892)
|++||+++|+++|.||. .+++.+|...+|.|||++||.|+. .|....
T Consensus 706 L~~L~ls~N~l~g~iP~-~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 706 LTEIDLSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp CSEEECCSSEEEEECCS-SSSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred CCEEECcCCcccccCCC-chhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 99999999999999998 789999999999999999999987 786543
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-72 Score=676.73 Aligned_cols=657 Identities=29% Similarity=0.435 Sum_probs=449.2
Q ss_pred CCCcEEeCCCCccCCc---cccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCCh-hhhcC
Q 044158 49 QQLESLDLSGNNIAGC---VENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINI-EELDS 124 (892)
Q Consensus 49 ~~L~~L~Ls~n~i~~~---~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~-~~l~~ 124 (892)
.+++.|||+++.+.+. .+ ..+.++++|+.++++.+.+. ..|+.|+++++|++|+|++|.+.+.+|. ..+++
T Consensus 50 ~~v~~L~L~~~~l~g~~~~l~----~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~ 124 (768)
T 3rgz_A 50 DKVTSIDLSSKPLNVGFSAVS----SSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGS 124 (768)
T ss_dssp TEEEEEECTTSCCCEEHHHHH----HHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGG
T ss_pred CcEEEEECCCCCcCCccCccC----hhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhC
Confidence 4677888888877764 22 34677788888888877764 2457788888888888888888766653 25778
Q ss_pred CCCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCcccccc---ccCCCCCCEEECCCCCCCCccCCcccccC
Q 044158 125 LSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHS---IGSFPSLKTLYLKSNNFAKTVTTTQGLCE 201 (892)
Q Consensus 125 l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 201 (892)
+++|++|++++|.+.+..+...+.++++|++|++++|.+++. .+.. +.++++|++|++++|.+.+..+ +..
T Consensus 125 l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~ 198 (768)
T 3rgz_A 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA--NVVGWVLSDGCGELKHLAISGNKISGDVD----VSR 198 (768)
T ss_dssp CTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEE--THHHHHHTTCCTTCCEEECCSSEEESCCB----CTT
T ss_pred CCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCc--CChhhhhhccCCCCCEEECCCCcccccCC----ccc
Confidence 888888888888877665554347788888888888887764 3333 6677778888887777765443 356
Q ss_pred CCCCcEEEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccE
Q 044158 202 LAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKI 281 (892)
Q Consensus 202 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~ 281 (892)
+++|++|++++|.+.+.+|. ++++++|++|++++|.+++.+ +..+..+++|++|++++|.+.+.++.
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~----------- 265 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF-SRAISTCTELKLLNISSNQFVGPIPP----------- 265 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH-HHHTTTCSSCCEEECCSSCCEESCCC-----------
T ss_pred CCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc-cHHHhcCCCCCEEECCCCcccCccCc-----------
Confidence 77777777777777766665 777777777777777776544 55566666666666666655432221
Q ss_pred EEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEE
Q 044158 282 FHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSII 361 (892)
Q Consensus 282 l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~ 361 (892)
. .+++|++|++++|.+.+.+|..+...+
T Consensus 266 -------------------------------------------~--~l~~L~~L~L~~n~l~~~ip~~~~~~~------- 293 (768)
T 3rgz_A 266 -------------------------------------------L--PLKSLQYLSLAENKFTGEIPDFLSGAC------- 293 (768)
T ss_dssp -------------------------------------------C--CCTTCCEEECCSSEEEESCCCCSCTTC-------
T ss_pred -------------------------------------------c--ccCCCCEEECcCCccCCccCHHHHhhc-------
Confidence 0 223344444444444444444322223
Q ss_pred ccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchh-ccCCCCCcEEECcCCcC
Q 044158 362 LANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSS-FGDMNSLIYLDLSNNQL 440 (892)
Q Consensus 362 L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L~L~~n~l 440 (892)
++|++|++++|.+++.+|..+.. +++|++|++++|.+.+.+|.. +..+++|++|++++|++
T Consensus 294 -----------------~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 294 -----------------DTLTGLDLSGNHFYGAVPPFFGS-CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp -----------------TTCSEEECCSSEEEECCCGGGGG-CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred -----------------CcCCEEECcCCcCCCccchHHhc-CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence 55555555555555555555443 566666666666666555544 66666666666666666
Q ss_pred ccccchhHhhcCccCcEEEccCCcccccccccccc--cCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCcc
Q 044158 441 TGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKIN--LTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIP 518 (892)
Q Consensus 441 ~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 518 (892)
++.+|..+....++|++|++++|.+++.++..+.. +++|++|++++|++++.+|..+.++++|++|++++|++++.+|
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 435 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred CccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc
Confidence 66666555422226666666666666666655554 6667777777777776777777777777777777777777777
Q ss_pred ccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCC
Q 044158 519 TWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLS 598 (892)
Q Consensus 519 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 598 (892)
..++.+++|+.|++++|.+++.+|..+..+++|++|++++|++++ .+|..+.++++|++|++++|++++.+|.+++.++
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 514 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG-EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS-CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred HHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC-cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence 777777777777777777777777777777777777777777776 5677777777777888887777777777777778
Q ss_pred CCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCc
Q 044158 599 QLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEK 678 (892)
Q Consensus 599 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (892)
+|++|++++|+++|.+|..++.+++|++|++++|+++|.+|.++............. ...+.+............
T Consensus 515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA-----GKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC-----SCEEEEEECCSCCTTCCS
T ss_pred CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc-----cccccccccccccccccc
Confidence 888888888888777777777788888888888888887877766543221111000 000000000000000000
Q ss_pred ceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcC
Q 044158 679 ETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNL 758 (892)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l 758 (892)
........+. .......+..+..++++.|.+.|.+|..++.+++|+.|+|++|+++|.+|..++++++|+.|||++|++
T Consensus 590 ~~~~~~~~~~-~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 668 (768)
T 3rgz_A 590 AGNLLEFQGI-RSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668 (768)
T ss_dssp SEEEEECTTC-CGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC
T ss_pred cccccccccc-cchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCcc
Confidence 0000000000 000011234566788999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcccccCCCC
Q 044158 759 TGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPF 806 (892)
Q Consensus 759 ~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~ 806 (892)
+|.||..+++++.|++||+++|+++|.||..++.+..+...++++|+.
T Consensus 669 ~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 999999999999999999999999999999889999999999999875
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.2e-59 Score=558.08 Aligned_cols=582 Identities=23% Similarity=0.239 Sum_probs=332.3
Q ss_pred CCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEE
Q 044158 77 SNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFL 156 (892)
Q Consensus 77 ~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L 156 (892)
+++++|+|++|.+++..+..|+++++|++|++++|.+++ +++..++++++|++|++++|.++++. +..|+++++|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~l~-~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQHNELSQLS-DKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC-CCTTHHHHCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc-cCHHHHhcccCcCEEECCCCccCccC-hhhhccCCCCCEE
Confidence 345555555555555444455555555555555555543 22234555555555555555555432 2235555555555
Q ss_pred eCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCcccccc--CCCCCcEEeC
Q 044158 157 DLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLA--NLTSLRVLHV 234 (892)
Q Consensus 157 ~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L 234 (892)
++++|.++.. .+..++++++|++|++++|.+.+..+. .+..+++|++|++++|.+++..+..+. .+++|+.|++
T Consensus 103 ~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 103 HLMSNSIQKI--KNNPFVKQKNLITLDLSHNGLSSTKLG--TQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp ECCSSCCCCC--CSCTTTTCTTCCEEECCSSCCSCCCCC--SSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred ECCCCccCcc--ChhHccccCCCCEEECCCCcccccCch--hhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence 5555555443 334455555666666666555544433 455666666666666666665555443 3466777777
Q ss_pred CCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCC
Q 044158 235 PDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDH 314 (892)
Q Consensus 235 ~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 314 (892)
++|.+++.. +..+..+++|+.|++.++.+.....
T Consensus 179 ~~n~l~~~~-~~~~~~l~~L~~L~l~~~~l~~~~~--------------------------------------------- 212 (680)
T 1ziw_A 179 SSNQIKEFS-PGCFHAIGRLFGLFLNNVQLGPSLT--------------------------------------------- 212 (680)
T ss_dssp TTCCCCCBC-TTGGGGSSEECEEECTTCCCHHHHH---------------------------------------------
T ss_pred CCCcccccC-hhhhhhhhhhhhhhccccccChhhH---------------------------------------------
Confidence 777665532 5556666666666665554331000
Q ss_pred CCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCC--CccEEEccCCcCC
Q 044158 315 GDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRK--NIIALDISYNKLQ 392 (892)
Q Consensus 315 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~--~L~~L~l~~n~l~ 392 (892)
..++.. -..++|++|++++|.+++..+..+..++ +|++|++++|+++
T Consensus 213 -----------------------------~~~~~~--l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 213 -----------------------------EKLCLE--LANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp -----------------------------HHHHHH--HTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred -----------------------------HHHHHH--hhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 000000 0124455555555555544444444443 2666666666666
Q ss_pred CCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccc--------cchhHhhcCccCcEEEccCCc
Q 044158 393 GHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE--------IPEHLAMGCFNLEYLLLSNNS 464 (892)
Q Consensus 393 ~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~--------i~~~~~~~~~~L~~L~L~~n~ 464 (892)
+..|..+ ..+++|++|++++|.+.+..|..|.++++|+.|++++|...+. ++...+..+++|++|++++|.
T Consensus 262 ~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~ 340 (680)
T 1ziw_A 262 VVGNDSF-AWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340 (680)
T ss_dssp EECTTTT-TTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred ccCcccc-cCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence 3333333 3366777777777777766666777777777777776544332 122234456677777777777
Q ss_pred ccccccccccccCCCcEEeecCccCcCCC--CcccccC--CCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCC
Q 044158 465 LQGQLFSKKINLTKLKRLNLDGNHFIGGI--PESLSNC--SSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGP 540 (892)
Q Consensus 465 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 540 (892)
+++..+..|.++++|++|++++|.+.... +..|..+ ++|+.|++++|++++..|..+..+++|+.|++++|.+++.
T Consensus 341 l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp BCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEE
T ss_pred cCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccc
Confidence 77666666667777777777776643221 1223222 4677777777777766666777777777777777777655
Q ss_pred Cc-ccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccC--ccCChhhhcCCCCCEEecccccccccCCcc
Q 044158 541 IP-SEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN--GNIPNWMGRLSQLRYLILANNNFEGEVPLR 617 (892)
Q Consensus 541 ~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 617 (892)
+| ..+..+++|++|++++|++++ ..+..|..+++|+.|++++|.+. +.+|..+..+++|++|++++|++++..+..
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~ 499 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNKYLQ-LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCSEEE-CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCcccccCcccccEEecCCCCcce-eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhh
Confidence 44 466677777777777777665 33556667777777777777665 456667777777777777777777666666
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCc
Q 044158 618 LCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPL 697 (892)
Q Consensus 618 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 697 (892)
+..+++|++|++++|++++..+..+.... ......+
T Consensus 500 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~--------------------------------------------~~~~~~l 535 (680)
T 1ziw_A 500 LEGLEKLEILDLQHNNLARLWKHANPGGP--------------------------------------------IYFLKGL 535 (680)
T ss_dssp TTTCTTCCEEECCSSCCGGGGSTTSTTSC--------------------------------------------CCTTTTC
T ss_pred hccccccCEEeCCCCCccccchhhccCCc--------------------------------------------chhhcCC
Confidence 77777777777777776632111110000 0000123
Q ss_pred CccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCcccc-CCCCCCEEE
Q 044158 698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLV-ELNALAVFT 776 (892)
Q Consensus 698 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~-~l~~L~~l~ 776 (892)
++|+.|++++|+++...+..|.++++|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+.++
T Consensus 536 ~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~ 615 (680)
T 1ziw_A 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELD 615 (680)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEE
T ss_pred CCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEE
Confidence 3566666666666633333466666666666666666655555556666666666666666655555554 455666666
Q ss_pred ccCCcccccCC
Q 044158 777 VAHNNLSGKIP 787 (892)
Q Consensus 777 ls~N~l~g~ip 787 (892)
+++|++.+..+
T Consensus 616 l~~N~~~c~c~ 626 (680)
T 1ziw_A 616 MRFNPFDCTCE 626 (680)
T ss_dssp CTTCCCCBCCC
T ss_pred ccCCCcccCCc
Confidence 66666655544
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=9.2e-58 Score=545.49 Aligned_cols=576 Identities=22% Similarity=0.232 Sum_probs=411.4
Q ss_pred CCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCC
Q 044158 49 QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNL 128 (892)
Q Consensus 49 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L 128 (892)
+++++|+|++|.+++.+. ..|.++++|++|+|++|.+++..|.+|+++++|++|++++|.++ .+|...|+++++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPA----ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEEECCSSCCCCCCG----GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred CCCcEEECCCCCCCCcCH----HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCC
Confidence 789999999999987665 35889999999999999999999999999999999999999998 6787689999999
Q ss_pred CEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEE
Q 044158 129 EGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL 208 (892)
Q Consensus 129 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L 208 (892)
++|++++|.++++. +..|+++++|++|++++|.+++. .+..++.+++|++|++++|.+.+..+.......+++|++|
T Consensus 100 ~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L 176 (680)
T 1ziw_A 100 TELHLMSNSIQKIK-NNPFVKQKNLITLDLSHNGLSST--KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKL 176 (680)
T ss_dssp SEEECCSSCCCCCC-SCTTTTCTTCCEEECCSSCCSCC--CCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEE
T ss_pred CEEECCCCccCccC-hhHccccCCCCEEECCCCccccc--CchhhcccccCCEEEccCCcccccCHHHhhccccccccEE
Confidence 99999999998765 34599999999999999999876 6677889999999999999988766542223456899999
Q ss_pred EccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcc---cccccCcEEeccCccccCCCCchhhcCCCCccEEEcc
Q 044158 209 YIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPL---MHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGR 285 (892)
Q Consensus 209 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l---~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~ 285 (892)
++++|.+.+..|..+..+++|+.|++.++.+.+.. ...+ ...++|+.|++++|.+.+..+
T Consensus 177 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~-~~~~~~~l~~~~L~~L~L~~n~l~~~~~---------------- 239 (680)
T 1ziw_A 177 ELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL-TEKLCLELANTSIRNLSLSNSQLSTTSN---------------- 239 (680)
T ss_dssp ECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHH-HHHHHHHHTTSCCCEEECTTSCCCEECT----------------
T ss_pred ECCCCcccccChhhhhhhhhhhhhhccccccChhh-HHHHHHHhhhccccEEEccCCcccccCh----------------
Confidence 99999999999999999999999999999876421 1111 023567777777776553221
Q ss_pred CccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCC--CCccEEEccCCcCccccchhhhhcCCCCCEEEcc
Q 044158 286 ENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQ--HHLEFVIISDVNMRGEFPSWLLENNTNLRSIILA 363 (892)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~ 363 (892)
.++..+ ++|++|++++|.+.+..|.. ++.+++|++|+++
T Consensus 240 --------------------------------------~~~~~l~~~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~ 280 (680)
T 1ziw_A 240 --------------------------------------TTFLGLKWTNLTMLDLSYNNLNVVGNDS-FAWLPQLEYFFLE 280 (680)
T ss_dssp --------------------------------------TTTGGGGGSCCCEEECTTSCCCEECTTT-TTTCTTCCEEECC
T ss_pred --------------------------------------hHhhccCcCCCCEEECCCCCcCccCccc-ccCcccccEeeCC
Confidence 111111 23566666666655544444 5667777777777
Q ss_pred CCcCcCCCCCCCCCCCCccEEEccCCcCCCCCc--------hhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEEC
Q 044158 364 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIP--------VEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDL 435 (892)
Q Consensus 364 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~--------~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 435 (892)
+|.+++..+..+..+++|++|++++|...+.++ ...+..+++|++|++++|.+.+..+..|.++++|++|++
T Consensus 281 ~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 281 YNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp SCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred CCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 777777666677777777777777665443221 112223455555555555555554555555555555555
Q ss_pred cCCcCcc-ccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCC
Q 044158 436 SNNQLTG-EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDIS 514 (892)
Q Consensus 436 ~~n~l~~-~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 514 (892)
++|.+.. .++...+..+ ..++|+.|++++|++.+..|..|..+++|++|++++|+++
T Consensus 361 s~n~~~~~~l~~~~f~~~----------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSL----------------------AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp TTCBSCCCEECTTTTGGG----------------------TTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CCCchhhhhcchhhhccc----------------------ccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 5554321 1221111111 1135666666666665555555666666666666666665
Q ss_pred CCcc-ccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCC-cccccccCCCCccEEEccCCccCccCCh
Q 044158 515 GSIP-TWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR-PLNGAFSKCSYLLTLDLCNNRLNGNIPN 592 (892)
Q Consensus 515 ~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 592 (892)
+.+| ..+..+++|++|++++|++.+..+..|..+++|++|++++|.+++. ..|..+..+++|++|++++|++++..+.
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence 4333 4566666666666666666666666666667777777777766532 3456677777777777777777766666
Q ss_pred hhhcCCCCCEEecccccccccCC--------ccccCCCCCCEEEcCCCcCCCCCCc-cccCCcccccccccccccccccc
Q 044158 593 WMGRLSQLRYLILANNNFEGEVP--------LRLCQLQKLRLLDLSHNNFSGQIPP-CLDNTSLHREEGYYDLIPTYRNE 663 (892)
Q Consensus 593 ~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~Ls~N~l~g~~p~-~~~~~~~~~~~~~~~~~~~~~~~ 663 (892)
.+..+++|++|++++|++++..+ ..+..+++|++|+|++|+++ .+|. .+..
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~------------------- 558 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKD------------------- 558 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTT-------------------
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHccc-------------------
Confidence 67777777777777777765321 23678899999999999988 4553 2332
Q ss_pred cccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCcccccccc
Q 044158 664 YDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFS 743 (892)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 743 (892)
+++|+.||+++|++++..+..|..+++|+.|+|++|++++.+|..++
T Consensus 559 ---------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 559 ---------------------------------LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp ---------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred ---------------------------------ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 34688999999999977777789999999999999999999888887
Q ss_pred -CCCCCCEEECCCCcCcccCC
Q 044158 744 -NLRQVESLDLSYNNLTGKIP 763 (892)
Q Consensus 744 -~l~~L~~LdLs~N~l~g~ip 763 (892)
.+++|+.|++++|.+.+..+
T Consensus 606 ~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 606 PAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp HHHTTCSEEECTTCCCCBCCC
T ss_pred ccccccCEEEccCCCcccCCc
Confidence 78999999999999997654
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.1e-53 Score=499.50 Aligned_cols=534 Identities=22% Similarity=0.219 Sum_probs=262.0
Q ss_pred CEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeCC
Q 044158 80 KFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLS 159 (892)
Q Consensus 80 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~ 159 (892)
+.++.++..++ .+|..+. +++++|++++|.++ .+++..|.++++|++|++++|.+.++.+ ..|.++++|++|+++
T Consensus 15 ~~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls 89 (606)
T 3t6q_A 15 KTYNCENLGLN-EIPGTLP--NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHE-DTFQSQHRLDTLVLT 89 (606)
T ss_dssp TEEECTTSCCS-SCCTTSC--TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECT-TTTTTCTTCCEEECT
T ss_pred ceEECCCCCcc-cCcCCCC--CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeCh-hhccCccccCeeeCC
Confidence 45666666665 3455444 25677777777776 3444466777777777777776665432 336666666666666
Q ss_pred CCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCccccccCCCCCcEEeCCCCCc
Q 044158 160 GLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQL 239 (892)
Q Consensus 160 ~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 239 (892)
+|.++.. .+..++.+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+.....+..+++|++|++++|.+
T Consensus 90 ~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~l~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 90 ANPLIFM--AETALSGPKALKHLFFIQTGISSIDFI--PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp TCCCSEE--CTTTTSSCTTCCEEECTTSCCSCGGGS--CCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred CCccccc--ChhhhcccccccEeeccccCcccCCcc--hhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence 6665543 344455555555555555544443222 234444444444444444332212222233333333333333
Q ss_pred ccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCC
Q 044158 240 TENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDG 319 (892)
Q Consensus 240 ~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 319 (892)
++.. +..
T Consensus 166 ~~~~-~~~------------------------------------------------------------------------ 172 (606)
T 3t6q_A 166 HYLS-KED------------------------------------------------------------------------ 172 (606)
T ss_dssp CEEC-HHH------------------------------------------------------------------------
T ss_pred cccC-hhh------------------------------------------------------------------------
Confidence 2210 111
Q ss_pred CCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCC--EEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCch
Q 044158 320 GTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLR--SIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPV 397 (892)
Q Consensus 320 ~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~--~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~ 397 (892)
++.+++|+ .|++++|.+++..+..+.. .+|+.|++++|. .++.
T Consensus 173 -------------------------------~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~---~~~~ 217 (606)
T 3t6q_A 173 -------------------------------MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQ---NLLV 217 (606)
T ss_dssp -------------------------------HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCS---CHHH
T ss_pred -------------------------------hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCch---hHHH
Confidence 33344444 4444444444433333222 356666666664 2232
Q ss_pred hhhhcCCCCcEEECcCCcCC-----ccCchhccCCC--CCcEEECcCCcCccccchhHhhcCccCcEEEccCCccccccc
Q 044158 398 EIGKVLPNLGFLTISFNAFN-----GSIPSSFGDMN--SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLF 470 (892)
Q Consensus 398 ~~~~~l~~L~~L~L~~n~~~-----~~~p~~~~~l~--~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~ 470 (892)
.+. .+.++....+....+. ...+..+..+. +|+.|++++|.++ .++...+..+++|++|++++|+++ .+|
T Consensus 218 ~~~-~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~-~lp 294 (606)
T 3t6q_A 218 IFK-GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFF-NISSNTFHCFSGLQELDLTATHLS-ELP 294 (606)
T ss_dssp HHH-HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCS-SCCTTTTTTCTTCSEEECTTSCCS-CCC
T ss_pred Hhh-hccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccC-ccCHHHhccccCCCEEeccCCccC-CCC
Confidence 222 2444433333222111 11112222221 4555555555555 344444445555555555555555 344
Q ss_pred ccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccc-cccCCCCCcEEECCCCcccCCC--cccccC
Q 044158 471 SKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPT-WMGNISFLDAIIMPDNHLEGPI--PSEFCQ 547 (892)
Q Consensus 471 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~~~~--~~~~~~ 547 (892)
..+..+++|++|++++|++.+..|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|.+++.. +..+..
T Consensus 295 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 374 (606)
T 3t6q_A 295 SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374 (606)
T ss_dssp SSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTT
T ss_pred hhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhccc
Confidence 4555555555555555555554455555555555555555555543332 3555555555555555555433 444555
Q ss_pred CCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCCh-hhhcCCCCCEEecccccccccCCccccCCCCCCE
Q 044158 548 LDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPN-WMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRL 626 (892)
Q Consensus 548 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 626 (892)
+++|++|++++|++++ ..+..+..+++|++|++++|++.+..|. .+..+++|++|++++|.+++..|..+..+++|++
T Consensus 375 l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 453 (606)
T 3t6q_A 375 LSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQH 453 (606)
T ss_dssp CTTCCEEECCSCSCEE-ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCcCCc-CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCE
Confidence 5555555555555544 2344455555555555555555544332 3455555555555555555555555555555555
Q ss_pred EEcCCCcCCCCC-C--ccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCcccee
Q 044158 627 LDLSHNNFSGQI-P--PCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGL 703 (892)
Q Consensus 627 L~Ls~N~l~g~~-p--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L 703 (892)
|++++|++++.. | ..+. .+++|+.|
T Consensus 454 L~L~~n~l~~~~~~~~~~~~----------------------------------------------------~l~~L~~L 481 (606)
T 3t6q_A 454 LNLQGNHFPKGNIQKTNSLQ----------------------------------------------------TLGRLEIL 481 (606)
T ss_dssp EECTTCBCGGGEECSSCGGG----------------------------------------------------GCTTCCEE
T ss_pred EECCCCCCCccccccchhhc----------------------------------------------------cCCCccEE
Confidence 555555554311 0 0011 12245555
Q ss_pred eccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccc
Q 044158 704 DLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783 (892)
Q Consensus 704 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 783 (892)
++++|++++..|..|+.+++|+.|+|++|++++.+|..+.++++| .||+++|++++.+|..+..+++|+.+++++|+++
T Consensus 482 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 482 VLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred ECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCcc
Confidence 555555555555555555555555555555555555555555555 5555555555555555555555555555555555
Q ss_pred ccCC
Q 044158 784 GKIP 787 (892)
Q Consensus 784 g~ip 787 (892)
+.++
T Consensus 561 c~c~ 564 (606)
T 3t6q_A 561 CTCS 564 (606)
T ss_dssp CSGG
T ss_pred ccCC
Confidence 4443
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.2e-53 Score=499.41 Aligned_cols=523 Identities=20% Similarity=0.219 Sum_probs=349.6
Q ss_pred CCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEe
Q 044158 78 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLD 157 (892)
Q Consensus 78 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~ 157 (892)
++++|+|++|.+++..|..|+++++|++|++++|.+.+ +++..|.++++|++|++++|.+++..+ ..|+++++|++|+
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAE-TALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCSEECT-TTTSSCTTCCEEE
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccce-eChhhccCccccCeeeCCCCcccccCh-hhhcccccccEee
Confidence 34444444444444444444455555555555544442 222244455555555555554444322 2355555555555
Q ss_pred CCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCccccccCCCCCc--EEeCC
Q 044158 158 LSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLR--VLHVP 235 (892)
Q Consensus 158 L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~ 235 (892)
+++|.++.. .+..++.+++|++|++++|.+.+.... .+..+++|++|++++|.+.+..+..++.+++|+ .|+++
T Consensus 112 L~~n~i~~l--~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 112 FIQTGISSI--DFIPLHNQKTLESLYLGSNHISSIKLP--KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLN 187 (606)
T ss_dssp CTTSCCSCG--GGSCCTTCTTCCEEECCSSCCCCCCCC--TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECT
T ss_pred ccccCcccC--CcchhccCCcccEEECCCCcccccCcc--cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecC
Confidence 555555443 233455566666666666665543222 234477788888888877777777777888887 78888
Q ss_pred CCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCC
Q 044158 236 DNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHG 315 (892)
Q Consensus 236 ~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 315 (892)
+|.+.+.. +..+ ...+|++|++++|... ...+..+..++
T Consensus 188 ~n~l~~~~-~~~~-~~~~L~~L~l~~~~~~----~~~~~~l~~~~----------------------------------- 226 (606)
T 3t6q_A 188 GNDIAGIE-PGAF-DSAVFQSLNFGGTQNL----LVIFKGLKNST----------------------------------- 226 (606)
T ss_dssp TCCCCEEC-TTTT-TTCEEEEEECTTCSCH----HHHHHHTTTCE-----------------------------------
T ss_pred CCccCccC-hhHh-hhccccccccCCchhH----HHHhhhccccc-----------------------------------
Confidence 88876632 3333 2345666666655310 01111111111
Q ss_pred CCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCC
Q 044158 316 DSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHI 395 (892)
Q Consensus 316 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i 395 (892)
...+.-..+.+ +... .+.+..
T Consensus 227 -------------------------------------------l~~l~~~~~~~-----------~~~~-----~i~~~~ 247 (606)
T 3t6q_A 227 -------------------------------------------IQSLWLGTFED-----------MDDE-----DISPAV 247 (606)
T ss_dssp -------------------------------------------EEEEECCCCTT-----------SCCC-----CCCGGG
T ss_pred -------------------------------------------hhheechhhcc-----------cccc-----ccChhH
Confidence 11110000000 0000 000011
Q ss_pred chhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccc
Q 044158 396 PVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKIN 475 (892)
Q Consensus 396 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 475 (892)
...+.. .+|+.|++++|.+.+..+..|+.+++|++|++++|+++ .+|..+ ..+++|++|++++|.+++..+..+..
T Consensus 248 ~~~l~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~ 323 (606)
T 3t6q_A 248 FEGLCE--MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASN 323 (606)
T ss_dssp GGGGGG--SEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSC-CSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred hchhhc--CceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhh-cccccCCEEECccCCcCcCchhhhhc
Confidence 111111 25666666666666666666666777777777777766 666554 45677777777777777666777777
Q ss_pred cCCCcEEeecCccCcCCCCc-ccccCCCCcEEEccCCcCCCCc--cccccCCCCCcEEECCCCcccCCCcccccCCCCCc
Q 044158 476 LTKLKRLNLDGNHFIGGIPE-SLSNCSSLQGLYISDNDISGSI--PTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE 552 (892)
Q Consensus 476 l~~L~~L~L~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 552 (892)
+++|++|++++|.+.+.+|. .+..+++|++|++++|++++.. +..+..+++|++|++++|.+.+..|..+..+++|+
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 403 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLE 403 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCS
T ss_pred cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCC
Confidence 78888888888877765554 4778888888888888887665 66788888888888888888888888888899999
Q ss_pred EEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccccc---CCccccCCCCCCEEEc
Q 044158 553 ILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGE---VPLRLCQLQKLRLLDL 629 (892)
Q Consensus 553 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L 629 (892)
+|++++|++++...+..+..+++|++|++++|.+++..|..++.+++|++|++++|++++. .+..+..+++|++|++
T Consensus 404 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L 483 (606)
T 3t6q_A 404 LLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL 483 (606)
T ss_dssp EEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred eEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence 9999999988754455688899999999999999988888899999999999999999863 3356888999999999
Q ss_pred CCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCcc
Q 044158 630 SHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNK 709 (892)
Q Consensus 630 s~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 709 (892)
++|++++..|..+..+ ++|+.||+++|+
T Consensus 484 s~n~l~~~~~~~~~~l----------------------------------------------------~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 484 SFCDLSSIDQHAFTSL----------------------------------------------------KMMNHVDLSHNR 511 (606)
T ss_dssp TTSCCCEECTTTTTTC----------------------------------------------------TTCCEEECCSSC
T ss_pred CCCccCccChhhhccc----------------------------------------------------cCCCEEECCCCc
Confidence 9999987777665433 368999999999
Q ss_pred ccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCC
Q 044158 710 LIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIP 763 (892)
Q Consensus 710 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip 763 (892)
+++..|..+..++.| .|+|++|++++.+|..++.+++|+.|++++|.+++..+
T Consensus 512 l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 512 LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 999999999999999 99999999999999999999999999999999997655
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-53 Score=513.58 Aligned_cols=560 Identities=21% Similarity=0.169 Sum_probs=336.4
Q ss_pred EEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEEC
Q 044158 105 NLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYL 184 (892)
Q Consensus 105 ~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L 184 (892)
..+.+++.++ .+|. ..++|++|+|++|.+++..+ ..|.++++|++|++++|..... ..+..+.++++|++|+|
T Consensus 8 ~~dcs~~~L~-~vP~----lp~~l~~LdLs~N~i~~i~~-~~~~~l~~L~~LdLs~n~~~~~-i~~~~f~~L~~L~~L~L 80 (844)
T 3j0a_A 8 IAFYRFCNLT-QVPQ----VLNTTERLLLSFNYIRTVTA-SSFPFLEQLQLLELGSQYTPLT-IDKEAFRNLPNLRILDL 80 (844)
T ss_dssp EEEESCCCSS-CCCS----SCTTCCEEEEESCCCCEECS-SSCSSCCSCSEEEECTTCCCCE-ECTTTTSSCTTCCEEEC
T ss_pred EEEccCCCCC-CCCC----CCCCcCEEECCCCcCCccCh-hHCcccccCeEEeCCCCCCccc-cCHHHhcCCCCCCEEEC
Confidence 5666777776 5663 34678888888888776543 3477777777777777744322 01445666666666666
Q ss_pred CCCCCCCccCCcccccCCCCCcEEEccCCcCccCcccc--ccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCc
Q 044158 185 KSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWC--LANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNN 262 (892)
Q Consensus 185 ~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n 262 (892)
++|.+.+..+. .++++++|++|++++|.+.+..|.. ++++++|++|++++|.+++...+..++++++|++|++++|
T Consensus 81 s~N~l~~~~p~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 81 GSSKIYFLHPD--AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp TTCCCCEECTT--SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred CCCcCcccCHh--HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 66666555444 4556666666666666655544332 5555555555555555544322234445555555555554
Q ss_pred cccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcC
Q 044158 263 HFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNM 342 (892)
Q Consensus 263 ~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 342 (892)
.+++
T Consensus 159 ~i~~---------------------------------------------------------------------------- 162 (844)
T 3j0a_A 159 QIFL---------------------------------------------------------------------------- 162 (844)
T ss_dssp CCCC----------------------------------------------------------------------------
T ss_pred cCCe----------------------------------------------------------------------------
Confidence 4332
Q ss_pred ccccchhhhhcC--CCCCEEEccCCcCcCCCCCCCCCCCC------ccEEEccCCcCCCCCchhhhhcC--CCCcEEECc
Q 044158 343 RGEFPSWLLENN--TNLRSIILANNSLSGPFRLPTRSRKN------IIALDISYNKLQGHIPVEIGKVL--PNLGFLTIS 412 (892)
Q Consensus 343 ~~~~p~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~~~~------L~~L~l~~n~l~~~i~~~~~~~l--~~L~~L~L~ 412 (892)
..|.. +..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+++.++..+...+ +.++.+.++
T Consensus 163 --~~~~~-l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~ 239 (844)
T 3j0a_A 163 --VCEHE-LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239 (844)
T ss_dssp --CCSGG-GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred --eCHHH-cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence 22221 2222 55666666666665554444444333 77788887777766666554422 456677766
Q ss_pred CC---------cCCccCchhccCC--CCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcE
Q 044158 413 FN---------AFNGSIPSSFGDM--NSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKR 481 (892)
Q Consensus 413 ~n---------~~~~~~p~~~~~l--~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 481 (892)
.+ .+.+..+..|..+ ++|+.|++++|.+. .++...+..+++|+.|++++|++++..+..|..+++|++
T Consensus 240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 318 (844)
T 3j0a_A 240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318 (844)
T ss_dssp SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC-EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred cccccccccccccCCCChhhhhccccCCccEEECCCCccc-ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence 33 2322333344443 56777777777776 333344456677777777777777766667777777777
Q ss_pred EeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCcc
Q 044158 482 LNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNI 561 (892)
Q Consensus 482 L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 561 (892)
|++++|++.+..|..|..+++|++|++++|++.+..+..+..+++|+.|++++|.+++. ..+++|+.|++++|++
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l 393 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKL 393 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCC
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCc
Confidence 77777777766666777777777777777777766666677777777777777776632 2266677777777777
Q ss_pred CCCcccccccCCCCccEEEccCCccCccCC-hhhhcCCCCCEEecccccccccCCc-cccCCCCCCEEEcCCCcCCCCCC
Q 044158 562 AGRPLNGAFSKCSYLLTLDLCNNRLNGNIP-NWMGRLSQLRYLILANNNFEGEVPL-RLCQLQKLRLLDLSHNNFSGQIP 639 (892)
Q Consensus 562 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p 639 (892)
+.+ |.. ..+++.|++++|++++... ..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+++..+
T Consensus 394 ~~l--~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~ 468 (844)
T 3j0a_A 394 VTL--PKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468 (844)
T ss_dssp CCC--CCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCC
T ss_pred ccc--ccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccc
Confidence 643 222 3567777777777765422 2345677777777777777654332 34456777777777777763322
Q ss_pred ccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCcccc
Q 044158 640 PCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIG 719 (892)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 719 (892)
....... ...+++|+.|+|++|++++..|..|.
T Consensus 469 ~~~~~~~-----------------------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~ 501 (844)
T 3j0a_A 469 TELCWDV-----------------------------------------------FEGLSHLQVLYLNHNYLNSLPPGVFS 501 (844)
T ss_dssp SCCCSSC-----------------------------------------------SSCBCCEECCCCCHHHHTTCCTTSSS
T ss_pred cccchhh-----------------------------------------------hcCcccccEEECCCCcccccChhHcc
Confidence 1110000 01234577777777777777777777
Q ss_pred ccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcc
Q 044158 720 ELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDED 799 (892)
Q Consensus 720 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~ 799 (892)
.+++|+.|+|++|++++.+|..+. ++|+.|||++|+|++.+|..+. .|+.+++++|++.+.++. .. |...
T Consensus 502 ~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~--~~---f~~~ 571 (844)
T 3j0a_A 502 HLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL--ST---FINW 571 (844)
T ss_dssp SCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC--CS---HHHH
T ss_pred chhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc--HH---HHHH
Confidence 777777777777777766666555 6777777777777777776543 567777777777766552 11 1111
Q ss_pred cccCCCCCCCCCCCCCCCCCC
Q 044158 800 SYEGNPFLCGPPLPKICNENR 820 (892)
Q Consensus 800 ~~~gN~~lc~~~l~~~c~~~~ 820 (892)
...+|..+||.+....|..+.
T Consensus 572 ~~~~~~~~~~~~~~~~C~~p~ 592 (844)
T 3j0a_A 572 LNHTNVTIAGPPADIYCVYPD 592 (844)
T ss_dssp HHHTTTTTCCCGGGCCCSSCS
T ss_pred HHhcCcccccccccCccCCch
Confidence 223444555555555676543
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.5e-52 Score=489.58 Aligned_cols=536 Identities=21% Similarity=0.200 Sum_probs=347.9
Q ss_pred CCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeC
Q 044158 79 LKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDL 158 (892)
Q Consensus 79 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L 158 (892)
-++++.++++++. +|..+. ++|++|++++|.++ .++...|.++++|++|++++|.++++. +..|.++++|++|++
T Consensus 13 ~~~~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~-~~~~~~l~~L~~L~L 87 (606)
T 3vq2_A 13 NITYQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIE-DKAWHGLHHLSNLIL 87 (606)
T ss_dssp TTEEECTTSCCSS-CCTTSC--TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEEC
T ss_pred CCceEccCCCccc-CCCCCC--CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccC-HHHhhchhhcCEeEC
Confidence 4678888888874 455444 78888888888887 455557888888888888888888764 334788888888888
Q ss_pred CCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCcc-CccccccCCCCCcEEeCCCC
Q 044158 159 SGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIG-SLPWCLANLTSLRVLHVPDN 237 (892)
Q Consensus 159 ~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n 237 (892)
++|.++.. .+..++++++|++|++++|.+.+..+. .++++++|++|++++|.+.+ .+|..++++++|++|++++|
T Consensus 88 s~n~l~~~--~p~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n 163 (606)
T 3vq2_A 88 TGNPIQSF--SPGSFSGLTSLENLVAVETKLASLESF--PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN 163 (606)
T ss_dssp TTCCCCCC--CTTSSTTCTTCCEEECTTSCCCCSSSS--CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred CCCccccc--ChhhcCCcccCCEEEccCCcccccccc--ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence 88887765 566777777777777777777665544 46777777777777777765 45666777777777777777
Q ss_pred CcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCCCC
Q 044158 238 QLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDS 317 (892)
Q Consensus 238 ~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 317 (892)
++++.. +..++.+++|+.
T Consensus 164 ~l~~~~-~~~~~~l~~L~~------------------------------------------------------------- 181 (606)
T 3vq2_A 164 YIQTIT-VNDLQFLRENPQ------------------------------------------------------------- 181 (606)
T ss_dssp CCCEEC-TTTTHHHHHCTT-------------------------------------------------------------
T ss_pred cceecC-hhhhhhhhcccc-------------------------------------------------------------
Confidence 665422 333333332220
Q ss_pred CCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCch
Q 044158 318 DGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPV 397 (892)
Q Consensus 318 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~ 397 (892)
.+++|++++|.+++..+..+... +|+.|++++|.+.+....
T Consensus 182 --------------------------------------~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~ 222 (606)
T 3vq2_A 182 --------------------------------------VNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMK 222 (606)
T ss_dssp --------------------------------------CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHH
T ss_pred --------------------------------------ccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHH
Confidence 02233333333333322233222 566677777666543333
Q ss_pred hhhhcCCCCcEEECcCCcCCc------cCchhccCCC--CCcEEEC-cCCcCccccchhHhhcCccCcEEEccCCccccc
Q 044158 398 EIGKVLPNLGFLTISFNAFNG------SIPSSFGDMN--SLIYLDL-SNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQ 468 (892)
Q Consensus 398 ~~~~~l~~L~~L~L~~n~~~~------~~p~~~~~l~--~L~~L~L-~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~ 468 (892)
.....++.|+.+++..+.+.+ ..+..+..+. .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+...
T Consensus 223 ~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~l 300 (606)
T 3vq2_A 223 TCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLAGVSIKYL 300 (606)
T ss_dssp HHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEESCCCCCC
T ss_pred HHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc--cccCCCCCEEEecCccchhh
Confidence 333447777777665443321 1111122211 3455555 55566655555 45667777777777776543
Q ss_pred ccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCC--Cccccc
Q 044158 469 LFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGP--IPSEFC 546 (892)
Q Consensus 469 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~ 546 (892)
+ .+..+++|+.|++++|.+ +.+| .+ .+++|++|++++|+..+.. .+..+++|+.|++++|.+++. .|..+.
T Consensus 301 -~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~ 373 (606)
T 3vq2_A 301 -E-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDL 373 (606)
T ss_dssp -C-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHH
T ss_pred -h-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhc
Confidence 3 566677777777777777 4566 34 6777777777777544322 455677777777777777654 356677
Q ss_pred CCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCC-hhhhcCCCCCEEecccccccccCCccccCCCCCC
Q 044158 547 QLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP-NWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLR 625 (892)
Q Consensus 547 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 625 (892)
.+++|++|++++|.+++ +|..+..+++|++|++++|++.+..| ..+..+++|++|++++|++.+..|..+..+++|+
T Consensus 374 ~~~~L~~L~L~~n~l~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 451 (606)
T 3vq2_A 374 GTNSLRHLDLSFNGAII--MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN 451 (606)
T ss_dssp CCSCCCEEECCSCSEEE--ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred cCCcccEeECCCCcccc--chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC
Confidence 77777777777777764 34566777777777777777776666 5667777777777777777776777777777777
Q ss_pred EEEcCCCcCCCC-CCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceee
Q 044158 626 LLDLSHNNFSGQ-IPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLD 704 (892)
Q Consensus 626 ~L~Ls~N~l~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 704 (892)
+|++++|++++. +|..+.. +++|+.|+
T Consensus 452 ~L~l~~n~l~~~~~~~~~~~----------------------------------------------------l~~L~~L~ 479 (606)
T 3vq2_A 452 TLKMAGNSFKDNTLSNVFAN----------------------------------------------------TTNLTFLD 479 (606)
T ss_dssp EEECTTCEEGGGEECSCCTT----------------------------------------------------CTTCCEEE
T ss_pred EEECCCCcCCCcchHHhhcc----------------------------------------------------CCCCCEEE
Confidence 777777777653 4443332 23577777
Q ss_pred ccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCC-CCCEEEccCCccc
Q 044158 705 LSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELN-ALAVFTVAHNNLS 783 (892)
Q Consensus 705 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~l~ls~N~l~ 783 (892)
+++|++++..|..++.+++|++|+|++|++++.+|..|+++++|+.||+++|+++ .+|..+..++ +|+++++++|++.
T Consensus 480 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~ 558 (606)
T 3vq2_A 480 LSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVA 558 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCC
T ss_pred CCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcc
Confidence 7777777777777777777777777777777777777777777777777777777 5666666665 4777777777777
Q ss_pred ccCCc
Q 044158 784 GKIPE 788 (892)
Q Consensus 784 g~ip~ 788 (892)
+..+.
T Consensus 559 c~c~~ 563 (606)
T 3vq2_A 559 CICEH 563 (606)
T ss_dssp CSSTT
T ss_pred cCCcc
Confidence 66553
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.7e-52 Score=502.38 Aligned_cols=544 Identities=21% Similarity=0.214 Sum_probs=392.5
Q ss_pred cEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEE
Q 044158 52 ESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGL 131 (892)
Q Consensus 52 ~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L 131 (892)
+..|.++++++.++. -.++|++|||++|.+++..+..|.++++|++|+|++|...+.+++..|.++++|++|
T Consensus 7 ~~~dcs~~~L~~vP~--------lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--------VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78 (844)
T ss_dssp EEEEESCCCSSCCCS--------SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred eEEEccCCCCCCCCC--------CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence 456777777765542 346888888888888887788888888888888888866666766678888888888
Q ss_pred eCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccc--cccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEE
Q 044158 132 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLH--SIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELY 209 (892)
Q Consensus 132 ~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~ 209 (892)
+|++|.+.+..+ ..|.++++|++|+|++|.+++. .+. .++++++|++|++++|.+.+..+. ..++++++|++|+
T Consensus 79 ~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~n~l~~~--~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~L~~L~~L~ 154 (844)
T 3j0a_A 79 DLGSSKIYFLHP-DAFQGLFHLFELRLYFCGLSDA--VLKDGYFRNLKALTRLDLSKNQIRSLYLH-PSFGKLNSLKSID 154 (844)
T ss_dssp ECTTCCCCEECT-TSSCSCSSCCCEECTTCCCSSC--CSTTCCCSSCSSCCEEEEESCCCCCCCCC-GGGGTCSSCCEEE
T ss_pred ECCCCcCcccCH-hHccCCcccCEeeCcCCCCCcc--cccCccccccCCCCEEECCCCcccccccc-hhHhhCCCCCEEE
Confidence 888888877643 3477777777777777777653 222 256666666666666665544321 1355566666666
Q ss_pred ccCCcCccCccccccCC--CCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCc
Q 044158 210 IDHNDFIGSLPWCLANL--TSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGREN 287 (892)
Q Consensus 210 L~~n~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~ 287 (892)
+++|.+.+..+..+..+ ++|+.|++++|.+.+.. +..+..+++
T Consensus 155 Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~-~~~~~~~~~---------------------------------- 199 (844)
T 3j0a_A 155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRV-SVDWGKCMN---------------------------------- 199 (844)
T ss_dssp EESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCC-CCCCCSSSC----------------------------------
T ss_pred CCCCcCCeeCHHHcccccCCccceEECCCCcccccc-ccchhhcCC----------------------------------
Confidence 66665555555555444 45555555555554422 222222211
Q ss_pred cccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhh--cCCCCCEEEccCC
Q 044158 288 QIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLE--NNTNLRSIILANN 365 (892)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~--~~~~L~~L~L~~n 365 (892)
.+ ....|++|++++|.+.+.+|..+.. ..+.++.+.+..+
T Consensus 200 -------------------------------------~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 200 -------------------------------------PF-RNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp -------------------------------------TT-TTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred -------------------------------------cc-ccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 00 0112444444444444444443222 1245677777644
Q ss_pred cCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhc--CCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccc
Q 044158 366 SLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKV--LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443 (892)
Q Consensus 366 ~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~--l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 443 (892)
..... ...+.+.+. ....+.. .++|+.|++++|.+.+..|..|..+++|+.|++++|+++ .
T Consensus 242 ~~~~~---------------~~~~~l~~~-~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~ 304 (844)
T 3j0a_A 242 IMGAG---------------FGFHNIKDP-DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-K 304 (844)
T ss_dssp CCBCS---------------SSCSSSTTG-GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC-E
T ss_pred ccccc---------------ccccccCCC-ChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC-C
Confidence 33211 112223211 1111111 368999999999999888888999999999999999998 4
Q ss_pred cchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccC
Q 044158 444 IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGN 523 (892)
Q Consensus 444 i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 523 (892)
++...+.++++|++|++++|.+++..+..|..+++|+.|++++|++.+..+..|..+++|++|++++|.+++. ..
T Consensus 305 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~ 379 (844)
T 3j0a_A 305 IADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HF 379 (844)
T ss_dssp ECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SS
T ss_pred CChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cC
Confidence 4444557899999999999999988889999999999999999999887788899999999999999998843 23
Q ss_pred CCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCCh-hhhcCCCCCE
Q 044158 524 ISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPN-WMGRLSQLRY 602 (892)
Q Consensus 524 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~ 602 (892)
+++|+.|++++|+++ .+|.. ..+++.|++++|++++++.+..+..+++|++|++++|++++..+. .+..+++|+.
T Consensus 380 ~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~ 455 (844)
T 3j0a_A 380 IPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ 455 (844)
T ss_dssp CCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCB
T ss_pred CCCcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcccc
Confidence 788999999999998 44543 457999999999999876666677899999999999999866543 4566899999
Q ss_pred Eeccccccc-----ccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCC
Q 044158 603 LILANNNFE-----GEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGE 677 (892)
Q Consensus 603 L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (892)
|++++|.++ +..+..+..+++|+.|+|++|++++..|..+..+
T Consensus 456 L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-------------------------------- 503 (844)
T 3j0a_A 456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL-------------------------------- 503 (844)
T ss_dssp CEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSC--------------------------------
T ss_pred ccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccch--------------------------------
Confidence 999999997 4445678889999999999999997777655433
Q ss_pred cceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCc
Q 044158 678 KETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNN 757 (892)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~ 757 (892)
++|+.|+|++|++++..|..+. ++|+.|+|++|++++.+|..|. +|+.|++++|.
T Consensus 504 --------------------~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np 558 (844)
T 3j0a_A 504 --------------------TALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNK 558 (844)
T ss_dssp --------------------CSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEEC
T ss_pred --------------------hhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCC
Confidence 3699999999999987777666 8999999999999999998764 78999999999
Q ss_pred CcccCC
Q 044158 758 LTGKIP 763 (892)
Q Consensus 758 l~g~ip 763 (892)
+.+..+
T Consensus 559 ~~C~c~ 564 (844)
T 3j0a_A 559 FICECE 564 (844)
T ss_dssp CCCSSS
T ss_pred cccccc
Confidence 987654
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.5e-51 Score=483.31 Aligned_cols=521 Identities=21% Similarity=0.190 Sum_probs=396.3
Q ss_pred CCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCC
Q 044158 49 QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNL 128 (892)
Q Consensus 49 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L 128 (892)
++|++|+|++|.+++... ..|.++++|++|+|++|.+++..|.+|.++++|++|++++|.+++ +++..|+++++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L 106 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKS----YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQS-FSPGSFSGLTSL 106 (606)
T ss_dssp TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCC-CCTTSSTTCTTC
T ss_pred CCcCEEECCCCCcCEeCh----hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccc-cChhhcCCcccC
Confidence 677888888888776554 247778888888888888877777778888888888888887774 433477788888
Q ss_pred CEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCC---
Q 044158 129 EGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHL--- 205 (892)
Q Consensus 129 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L--- 205 (892)
++|++++|.+++..+. .++++++|++|++++|.+.+. .++..++++++|++|++++|.+.+..+. .++.+++|
T Consensus 107 ~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~~ 182 (606)
T 3vq2_A 107 ENLVAVETKLASLESF-PIGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNYIQTITVN--DLQFLRENPQV 182 (606)
T ss_dssp CEEECTTSCCCCSSSS-CCTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEEECCSSCCCEECTT--TTHHHHHCTTC
T ss_pred CEEEccCCcccccccc-ccCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEEEccCCcceecChh--hhhhhhccccc
Confidence 8888888877765433 377777777777777777652 1456677777777777777776655443 34444433
Q ss_pred -cEEEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEc
Q 044158 206 -QELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHG 284 (892)
Q Consensus 206 -~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l 284 (892)
++|++++|.+.+..+..+... +|+.|++++|.+.+...+..+..++.++.+++..+.+...... ..+
T Consensus 183 l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l---------~~~-- 250 (606)
T 3vq2_A 183 NLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL---------EIF-- 250 (606)
T ss_dssp CCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC---------SCC--
T ss_pred cceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc---------ccc--
Confidence 366666666665444444333 6666666666655433344555555555555544333211000 000
Q ss_pred cCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEc-cCCcCccccchhhhhcCCCCCEEEcc
Q 044158 285 RENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVII-SDVNMRGEFPSWLLENNTNLRSIILA 363 (892)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l-~~~~~~~~~p~~~~~~~~~L~~L~L~ 363 (892)
....+..+... .++.+++ ..+.+.+.+|. +..+++|+.|+++
T Consensus 251 ----------------------------------~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~--~~~l~~L~~L~l~ 293 (606)
T 3vq2_A 251 ----------------------------------EPSIMEGLCDV-TIDEFRLTYTNDFSDDIVK--FHCLANVSAMSLA 293 (606)
T ss_dssp ----------------------------------CGGGGTTGGGS-EEEEEEECCCTTCCGGGGS--CGGGTTCSEEEEE
T ss_pred ----------------------------------ChHHhhhhhhc-cHhheeccccccccccccc--cccCCCCCEEEec
Confidence 00111111222 4556666 55666777776 6789999999999
Q ss_pred CCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccc
Q 044158 364 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443 (892)
Q Consensus 364 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 443 (892)
+|.+.... .+..+++|++|++++|.+ +.+|. + .+++|++|++++|...+.. .+..+++|++|++++|.+++.
T Consensus 294 ~~~~~~l~--~l~~~~~L~~L~l~~n~l-~~lp~-~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~ 365 (606)
T 3vq2_A 294 GVSIKYLE--DVPKHFKWQSLSIIRCQL-KQFPT-L--DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFS 365 (606)
T ss_dssp SCCCCCCC--CCCTTCCCSEEEEESCCC-SSCCC-C--CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEE
T ss_pred Cccchhhh--hccccccCCEEEcccccC-ccccc-C--CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCC
Confidence 99997643 778889999999999999 58884 3 4899999999999665444 677999999999999999844
Q ss_pred --cchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCC-cccccCCCCcEEEccCCcCCCCcccc
Q 044158 444 --IPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIP-ESLSNCSSLQGLYISDNDISGSIPTW 520 (892)
Q Consensus 444 --i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 520 (892)
+|..+ ..+++|++|++++|.+++ +|..+..+++|+.|++++|++.+..| ..+..+++|++|++++|++++..|..
T Consensus 366 ~~~~~~~-~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 443 (606)
T 3vq2_A 366 GCCSYSD-LGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443 (606)
T ss_dssp EECCHHH-HCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred cchhhhh-ccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh
Confidence 25544 689999999999999986 45888999999999999999998877 68999999999999999999999999
Q ss_pred ccCCCCCcEEECCCCcccC-CCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCC
Q 044158 521 MGNISFLDAIIMPDNHLEG-PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQ 599 (892)
Q Consensus 521 ~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~ 599 (892)
+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++ ..|..+..+++|++|++++|++++..|..++.+++
T Consensus 444 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 522 (606)
T 3vq2_A 444 FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ-ISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522 (606)
T ss_dssp TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCc-cChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence 9999999999999999998 478889999999999999999998 55778999999999999999999999999999999
Q ss_pred CCEEecccccccccCCccccCCC-CCCEEEcCCCcCCCCCC
Q 044158 600 LRYLILANNNFEGEVPLRLCQLQ-KLRLLDLSHNNFSGQIP 639 (892)
Q Consensus 600 L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~g~~p 639 (892)
|++|++++|+++ .+|..+..++ +|++|++++|++.+..+
T Consensus 523 L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 523 LSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999999999999 6777788887 59999999999987655
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2e-49 Score=465.76 Aligned_cols=332 Identities=20% Similarity=0.264 Sum_probs=192.7
Q ss_pred cCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCc-CCC-CCchhhhhc-----CCCCcEEECcCCcCCccCch--h
Q 044158 353 NNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNK-LQG-HIPVEIGKV-----LPNLGFLTISFNAFNGSIPS--S 423 (892)
Q Consensus 353 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~-~i~~~~~~~-----l~~L~~L~L~~n~~~~~~p~--~ 423 (892)
++++|++|++++|.+.+..|..+..+++|++|++++|+ ++| .+|..++.. +++|++|++++|+++ .+|. .
T Consensus 247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~ 325 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS 325 (636)
T ss_dssp GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH
T ss_pred ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh
Confidence 56666666666666666666666677777777777776 776 677766541 267777777777777 5666 6
Q ss_pred ccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCC-CcEEeecCccCcCCCCcccccCC-
Q 044158 424 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTK-LKRLNLDGNHFIGGIPESLSNCS- 501 (892)
Q Consensus 424 ~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~~~~~~~~~~~~l~- 501 (892)
++++++|++|++++|+++|.+| .+..+++|++|++++|+++ .+|..+..+++ |++|++++|+++ .+|..+..++
T Consensus 326 l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l 401 (636)
T 4eco_A 326 LQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSV 401 (636)
T ss_dssp HTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCS
T ss_pred hccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhccc
Confidence 7777777777777777776666 3345666666666666666 45555666666 666666666665 4555554433
Q ss_pred -CCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEE
Q 044158 502 -SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLD 580 (892)
Q Consensus 502 -~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~ 580 (892)
+|++|++++|++++.+|..+..+. .....+++|++|++++|+++.++ +..+..+++|++|+
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~-----------------~~~~~~~~L~~L~Ls~N~l~~lp-~~~~~~l~~L~~L~ 463 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLD-----------------PTPFKGINVSSINLSNNQISKFP-KELFSTGSPLSSIN 463 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTC-----------------SSCCCCCCEEEEECCSSCCCSCC-THHHHTTCCCSEEE
T ss_pred CccCEEECcCCcCCCcchhhhcccc-----------------cccccCCCCCEEECcCCccCcCC-HHHHccCCCCCEEE
Confidence 566666666666555555544000 00003445555555555555321 22334455555555
Q ss_pred ccCCccCccCCh-hhhc-------CCCCCEEecccccccccCCcccc--CCCCCCEEEcCCCcCCCCCCccccCCccccc
Q 044158 581 LCNNRLNGNIPN-WMGR-------LSQLRYLILANNNFEGEVPLRLC--QLQKLRLLDLSHNNFSGQIPPCLDNTSLHRE 650 (892)
Q Consensus 581 L~~n~l~~~~p~-~~~~-------l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~ 650 (892)
+++|+++ .+|. .+.. +++|++|++++|+++ .+|..+. .+++|+.|+|++|++++ +|..+.++
T Consensus 464 Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l----- 535 (636)
T 4eco_A 464 LMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNS----- 535 (636)
T ss_dssp CCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGC-----
T ss_pred CCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcC-----
Confidence 5555555 3332 2222 226677777777766 5666655 66666666666666664 55444322
Q ss_pred ccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEcc
Q 044158 651 EGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLS 730 (892)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 730 (892)
++|+.|++++|+ +++
T Consensus 536 -----------------------------------------------~~L~~L~Ls~N~------------------~ls 550 (636)
T 4eco_A 536 -----------------------------------------------STLKGFGIRNQR------------------DAQ 550 (636)
T ss_dssp -----------------------------------------------SSCCEEECCSCB------------------CTT
T ss_pred -----------------------------------------------CCCCEEECCCCc------------------ccc
Confidence 245555555443 334
Q ss_pred CccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccc
Q 044158 731 RNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783 (892)
Q Consensus 731 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 783 (892)
+|++.+.+|..++++++|+.|||++|++ +.+|..+. ++|+.||+++|++.
T Consensus 551 ~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 551 GNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI 600 (636)
T ss_dssp CCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred cCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence 5555555555555566666666666666 45555543 45666666666544
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-47 Score=443.96 Aligned_cols=501 Identities=20% Similarity=0.189 Sum_probs=281.4
Q ss_pred CCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCC
Q 044158 49 QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNL 128 (892)
Q Consensus 49 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L 128 (892)
+++++|||++|.+++... ..|.++++|++|+|++|++++..+.+|+++++|++|++++|.++ .++...|..+++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L 102 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL 102 (570)
T ss_dssp SSCCEEECCSCCCCEECT----TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTC
T ss_pred ccccEEEccCCccCccCh----hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccc
Confidence 456666776666655433 23566666666666666666655666666666666666666665 3444456666666
Q ss_pred CEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCC---
Q 044158 129 EGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHL--- 205 (892)
Q Consensus 129 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L--- 205 (892)
++|++++|.+++.... .++++++|++|++++|.++.. .++..++++++|++|++++|.+.+..+. .++.+++|
T Consensus 103 ~~L~L~~n~l~~l~~~-~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~~ 178 (570)
T 2z63_A 103 QKLVAVETNLASLENF-PIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLL 178 (570)
T ss_dssp CEEECTTSCCCCSTTC-SCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECTTSCCCEECGG--GGHHHHTCTTC
T ss_pred ccccccccccccCCCc-cccccccccEEecCCCcccee-cChhhhcccCCCCEEeCcCCccceecHH--Hccchhccchh
Confidence 6666666666654322 255666666666666655542 0344455555555555555554433222 33333344
Q ss_pred -cEEEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEc
Q 044158 206 -QELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHG 284 (892)
Q Consensus 206 -~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l 284 (892)
++|++++|.+.+..+..+.. . +|++|++++|..........+..++.++...+
T Consensus 179 ~~~L~l~~n~l~~~~~~~~~~-------------------------~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l 232 (570)
T 2z63_A 179 NLSLDLSLNPMNFIQPGAFKE-------------------------I-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232 (570)
T ss_dssp CCEEECTTCCCCEECTTTTTT-------------------------C-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEE
T ss_pred hhhcccCCCCceecCHHHhcc-------------------------C-cceeEecccccccccchhhhhcCccccceeee
Confidence 44444444444444333333 2 45555555443222111223334444444333
Q ss_pred cCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCC-cCccccchhhhhcCCCCCEEEcc
Q 044158 285 RENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDV-NMRGEFPSWLLENNTNLRSIILA 363 (892)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~p~~~~~~~~~L~~L~L~ 363 (892)
....+... ..++.+ .......+..+ .++.++++.+ .+.+..|.. +..+++|++|+++
T Consensus 233 ~~~~~~~~-----------~~l~~~---------~~~~~~~l~~l-~l~~l~l~~~~~~~~~~~~~-~~~l~~L~~L~l~ 290 (570)
T 2z63_A 233 VLGEFRNE-----------GNLEKF---------DKSALEGLCNL-TIEEFRLAYLDYYLDDIIDL-FNCLTNVSSFSLV 290 (570)
T ss_dssp EEEECCCC-----------SSCEEC---------CTTTTGGGGGS-EEEEEEEEETTEEESCSTTT-TGGGTTCSEEEEE
T ss_pred ccccccCc-----------hhhhhc---------chhhhcccccc-chhhhhhhcchhhhhhchhh-hcCcCcccEEEec
Confidence 22111000 000000 00000011111 2344444444 333333333 4455555555555
Q ss_pred CCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccc
Q 044158 364 NNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGE 443 (892)
Q Consensus 364 ~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~ 443 (892)
+|.+++ .+..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+.
T Consensus 291 ~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~---------------------------~~l~~L~~L~l~~n~~~~~ 340 (570)
T 2z63_A 291 SVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT---------------------------LKLKSLKRLTFTSNKGGNA 340 (570)
T ss_dssp SCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB---------------------------CBCSSCCEEEEESCBSCCB
T ss_pred Cccchh-hhhhhccC-CccEEeeccCccc-ccCc---------------------------ccccccCEEeCcCCccccc
Confidence 555543 22233333 4555555555444 3333 2344455555555544433
Q ss_pred cchhHhhcCccCcEEEccCCcccccc--cccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCcc-cc
Q 044158 444 IPEHLAMGCFNLEYLLLSNNSLQGQL--FSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIP-TW 520 (892)
Q Consensus 444 i~~~~~~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~ 520 (892)
++. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+ ..
T Consensus 341 ~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 341 FSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCT
T ss_pred ccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhh
Confidence 332 23455555555555554432 44455566666666666665543333 6666666666666666665544 45
Q ss_pred ccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCC
Q 044158 521 MGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQL 600 (892)
Q Consensus 521 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 600 (892)
+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+|..+..+++|++|++++|++++..|.++..+++|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 66677777777777777777777777788888888888887632567778888888888888888888778888888899
Q ss_pred CEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCc
Q 044158 601 RYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPP 640 (892)
Q Consensus 601 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~ 640 (892)
++|++++|++++..|..+..+++|+.|++++|++++..|.
T Consensus 497 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 9999999998887777788889999999999999887764
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-46 Score=436.88 Aligned_cols=519 Identities=22% Similarity=0.235 Sum_probs=365.0
Q ss_pred CCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeC
Q 044158 79 LKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDL 158 (892)
Q Consensus 79 L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L 158 (892)
.+.++.++.+++. +|..+. +++++|++++|.++ .++...|.++++|++|++++|.++++. +..|.++++|++|++
T Consensus 9 ~~~~~c~~~~l~~-ip~~l~--~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L 83 (570)
T 2z63_A 9 NITYQCMELNFYK-IPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLIL 83 (570)
T ss_dssp TTEEECCSSCCSS-CCSSSC--SSCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEEC-TTTTTTCTTCCEEEC
T ss_pred CcEEEeCCCCccc-cCCCcc--ccccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccC-cccccCchhCCEEeC
Confidence 4566777766663 454443 57888888888887 455557888888888888888887654 345778888888888
Q ss_pred CCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCcc-CccccccCCCCCcEEeCCCC
Q 044158 159 SGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIG-SLPWCLANLTSLRVLHVPDN 237 (892)
Q Consensus 159 ~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n 237 (892)
++|.++.. .+..++.+++|++|++++|.+.+..+. .++.+++|++|++++|.+.+ .+|..++++++|++|++++|
T Consensus 84 ~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 84 TGNPIQSL--ALGAFSGLSSLQKLVAVETNLASLENF--PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp TTCCCCEE--CTTTTTTCTTCCEEECTTSCCCCSTTC--SCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred cCCcCCcc--CHhhhcCccccccccccccccccCCCc--cccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 88877654 445677777777777777776655443 36667777777777776665 34666666666666666666
Q ss_pred CcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCCCC
Q 044158 238 QLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDS 317 (892)
Q Consensus 238 ~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 317 (892)
++++.. +..++.+++|
T Consensus 160 ~l~~~~-~~~~~~l~~L--------------------------------------------------------------- 175 (570)
T 2z63_A 160 KIQSIY-CTDLRVLHQM--------------------------------------------------------------- 175 (570)
T ss_dssp CCCEEC-GGGGHHHHTC---------------------------------------------------------------
T ss_pred ccceec-HHHccchhcc---------------------------------------------------------------
Confidence 654421 3333333333
Q ss_pred CCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCC-CEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCC-C
Q 044158 318 DGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNL-RSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGH-I 395 (892)
Q Consensus 318 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L-~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~-i 395 (892)
+.+ +++++++|.+++..+..+... +|+.|++++|..... +
T Consensus 176 -------------------------------------~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~ 217 (570)
T 2z63_A 176 -------------------------------------PLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVM 217 (570)
T ss_dssp -------------------------------------TTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHH
T ss_pred -------------------------------------chhhhhcccCCCCceecCHHHhccC-cceeEecccccccccch
Confidence 000 233333333333333333322 466666666543322 2
Q ss_pred chhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCc--cCcEEEccCC-ccccccccc
Q 044158 396 PVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF--NLEYLLLSNN-SLQGQLFSK 472 (892)
Q Consensus 396 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~--~L~~L~L~~n-~l~~~~~~~ 472 (892)
+..+ ..++.++.+.+....+. ....++ .++...+.++. .++.++++++ .+.+..+..
T Consensus 218 ~~~~-~~l~~l~~~~l~~~~~~--------~~~~l~-----------~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~ 277 (570)
T 2z63_A 218 KTCI-QGLAGLEVHRLVLGEFR--------NEGNLE-----------KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDL 277 (570)
T ss_dssp HHHH-HTTTTCEEEEEEEEECC--------CCSSCE-----------ECCTTTTGGGGGSEEEEEEEEETTEEESCSTTT
T ss_pred hhhh-cCccccceeeecccccc--------Cchhhh-----------hcchhhhccccccchhhhhhhcchhhhhhchhh
Confidence 3223 33666666555433222 111111 11111122222 3567777777 677777788
Q ss_pred ccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCc
Q 044158 473 KINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE 552 (892)
Q Consensus 473 ~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 552 (892)
+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|+
T Consensus 278 ~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~ 350 (570)
T 2z63_A 278 FNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLE 350 (570)
T ss_dssp TGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCC
T ss_pred hcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCC
Confidence 888888888888888887 577777777 8888888888887 4444 4678888888888888766554 6788899
Q ss_pred EEeCCCCccCCCc-ccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCC-ccccCCCCCCEEEcC
Q 044158 553 ILDLSKNNIAGRP-LNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVP-LRLCQLQKLRLLDLS 630 (892)
Q Consensus 553 ~L~Ls~n~l~~~~-~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls 630 (892)
+|++++|.+++.. .+..+..+++|++|++++|.+.+..+. +..+++|++|++++|++.+..| ..+..+++|++|+++
T Consensus 351 ~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 429 (570)
T 2z63_A 351 FLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429 (570)
T ss_dssp EEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECT
T ss_pred EEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCc
Confidence 9999999887632 256778889999999999988865544 8888999999999999887665 467888999999999
Q ss_pred CCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccc
Q 044158 631 HNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKL 710 (892)
Q Consensus 631 ~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l 710 (892)
+|++++..|..+.. +++|+.|++++|.+
T Consensus 430 ~n~l~~~~~~~~~~----------------------------------------------------l~~L~~L~l~~n~l 457 (570)
T 2z63_A 430 HTHTRVAFNGIFNG----------------------------------------------------LSSLEVLKMAGNSF 457 (570)
T ss_dssp TSCCEECCTTTTTT----------------------------------------------------CTTCCEEECTTCEE
T ss_pred CCcccccchhhhhc----------------------------------------------------CCcCcEEECcCCcC
Confidence 99988776665543 33688899999999
Q ss_pred c-ccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCc
Q 044158 711 I-GEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPE 788 (892)
Q Consensus 711 ~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 788 (892)
+ +.+|..+..+++|++|++++|++++.+|..|+.+++|+.|++++|++++.+|..+.++++|+.+++++|+++|.+|.
T Consensus 458 ~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred ccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 7 67898999999999999999999998899999999999999999999998888899999999999999999999886
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-46 Score=436.55 Aligned_cols=495 Identities=20% Similarity=0.214 Sum_probs=316.8
Q ss_pred CcccceeEecCCCCcEEEEEcCCCccccccccCcccCCCCCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCC
Q 044158 9 CCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNS 88 (892)
Q Consensus 9 ~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~s~f~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~ 88 (892)
.|.|.|+ |+....+++ .++... .++|++|+|++|.+++..+ ..|.++++|++|+|++|+
T Consensus 3 ~C~~~~~-c~~~~~~l~-------------~ip~~~---~~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~n~ 61 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFT-------------SIPSGL---TAAMKSLDLSFNKITYIGH----GDLRACANLQVLILKSSR 61 (549)
T ss_dssp EECTTSE-EECTTSCCS-------------SCCSCC---CTTCCEEECCSSCCCEECS----STTSSCTTCCEEECTTSC
T ss_pred cCCCCce-EECCCCccc-------------cccccC---CCCccEEECcCCccCccCh----hhhhcCCcccEEECCCCC
Confidence 4999999 975333332 122222 2688888888888876543 347888888888888888
Q ss_pred CCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCcc
Q 044158 89 FNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSK 168 (892)
Q Consensus 89 i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 168 (892)
+++..+.+|+++++|++|++++|.++ .++...|+++++|++|++++|.+++...+..++++++|++|++++|.+.+.
T Consensus 62 i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~-- 138 (549)
T 2z81_A 62 INTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE-- 138 (549)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE--
T ss_pred cCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccc--
Confidence 88877788888888888888888887 456556888888888888888887654444577777888888877763322
Q ss_pred cc-ccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCccccccCCCCCcEEeCCCCCccccc--CC
Q 044158 169 VL-HSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENL--SS 245 (892)
Q Consensus 169 ~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~--~~ 245 (892)
++ ..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.......+..+++|++|++++|++++.. ..
T Consensus 139 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 216 (549)
T 2z81_A 139 IRRIDFAGLTSLNELEIKALSLRNYQSQ--SLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL 216 (549)
T ss_dssp ECTTTTTTCCEEEEEEEEETTCCEECTT--TTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCC
T ss_pred cCHhhhhcccccCeeeccCCcccccChh--hhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccccc
Confidence 22 3566666666666666666555444 4556666666666666554322222344556666666665554411 00
Q ss_pred CcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCcc
Q 044158 246 SPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKF 325 (892)
Q Consensus 246 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 325 (892)
.....+++|+.|++++|.+
T Consensus 217 ~~~~~~~~L~~L~l~~n~l------------------------------------------------------------- 235 (549)
T 2z81_A 217 PVDEVSSPMKKLAFRGSVL------------------------------------------------------------- 235 (549)
T ss_dssp SSCCCCCCCCEEEEESCEE-------------------------------------------------------------
T ss_pred chhhhhhcccceecccccc-------------------------------------------------------------
Confidence 1112233344444433332
Q ss_pred ccCCCCccEEEccCCcCccccchh---hhhcCCCCCEEEccCCcCcCCCC------CCCCCCCCccEEEccCCcCCCCCc
Q 044158 326 LYHQHHLEFVIISDVNMRGEFPSW---LLENNTNLRSIILANNSLSGPFR------LPTRSRKNIIALDISYNKLQGHIP 396 (892)
Q Consensus 326 l~~~~~L~~L~l~~~~~~~~~p~~---~~~~~~~L~~L~L~~n~l~~~~~------~~~~~~~~L~~L~l~~n~l~~~i~ 396 (892)
.+..+.. .+..+++|+.+++++|.+.+... ..+..+++++.|++.++.+... .
T Consensus 236 -----------------~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-~ 297 (549)
T 2z81_A 236 -----------------TDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF-Y 297 (549)
T ss_dssp -----------------EHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCG-G
T ss_pred -----------------chhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchh-h
Confidence 2222211 12345556666666655544211 1123344555555555443310 0
Q ss_pred hhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccc---cc
Q 044158 397 VEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFS---KK 473 (892)
Q Consensus 397 ~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~ 473 (892)
. . ...+..+...++|+.|++++|++. .+|..++..+++|++|++++|++++..|. .+
T Consensus 298 ~-----~--------------~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 357 (549)
T 2z81_A 298 L-----F--------------YDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357 (549)
T ss_dssp G-----S--------------CCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCT
T ss_pred h-----c--------------ccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhh
Confidence 0 0 011122233456666666666665 66666655666777777777776665432 35
Q ss_pred cccCCCcEEeecCccCcCCCC--cccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCC
Q 044158 474 INLTKLKRLNLDGNHFIGGIP--ESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYL 551 (892)
Q Consensus 474 ~~l~~L~~L~L~~n~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 551 (892)
..+++|+.|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++++|++++ +|..+ .++|
T Consensus 358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L 433 (549)
T 2z81_A 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTL 433 (549)
T ss_dssp TSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTC
T ss_pred hccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCc
Confidence 567777777777777765422 44677777777888777777 466677777778888888887763 33333 2578
Q ss_pred cEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCC
Q 044158 552 EILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSH 631 (892)
Q Consensus 552 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 631 (892)
++|++++|++++. ...+++|++|++++|+++ .+|. ...+++|++|++++|++++..|..+..+++|+.|++++
T Consensus 434 ~~L~Ls~N~l~~~-----~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 506 (549)
T 2z81_A 434 EVLDVSNNNLDSF-----SLFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506 (549)
T ss_dssp SEEECCSSCCSCC-----CCCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCS
T ss_pred eEEECCCCChhhh-----cccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecC
Confidence 9999999988873 257789999999999998 5665 46788999999999999988888889999999999999
Q ss_pred CcCCCCCC
Q 044158 632 NNFSGQIP 639 (892)
Q Consensus 632 N~l~g~~p 639 (892)
|++++..|
T Consensus 507 N~~~~~~~ 514 (549)
T 2z81_A 507 NPWDCSCP 514 (549)
T ss_dssp SCBCCCHH
T ss_pred CCccCCCc
Confidence 99987766
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-46 Score=444.63 Aligned_cols=480 Identities=17% Similarity=0.219 Sum_probs=237.0
Q ss_pred ceeEecCCCCcEEEEEcCCCccccccccCcccCCCCCCCcEEeC-CCCccCCccccccccccCCCCC-----CC------
Q 044158 13 QSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDL-SGNNIAGCVENEGLEKLSGLSN-----LK------ 80 (892)
Q Consensus 13 ~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~s~f~~~~~L~~L~L-s~n~i~~~~~~~~~~~~~~l~~-----L~------ 80 (892)
.||+|+. .|||++|+|+++++.|.+ +..|+++++|++||| ++|.+++.........-..+.. ++
T Consensus 315 ~GV~C~~-~~~V~~L~Ls~~~L~G~i---p~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~ 390 (876)
T 4ecn_A 315 PGVDLDN-NGRVTGLSLAGFGAKGRV---PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKM 390 (876)
T ss_dssp TTEEECT-TSCEEEEECTTTCCEEEE---CGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHH
T ss_pred CceEecC-CCCEEEEECccCCCCCcC---chHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhh
Confidence 9999986 799999999999888764 367899999999999 8887765422110000000000 00
Q ss_pred EEeC-CCCCCCCcc-----------cccccCCCCCCEEecCC--cccccCCChhhhcCCCCCCEEeCCCCCCCC------
Q 044158 81 FLDL-SHNSFNNSV-----------LSSLAGLSSLKNLSLAY--NRLEGSINIEELDSLSNLEGLDMSDNEIDN------ 140 (892)
Q Consensus 81 ~L~L-s~n~i~~~~-----------~~~l~~l~~L~~L~Ls~--n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~------ 140 (892)
.++. ....+.+.. +........++.+.+.. |.+++ ||. .++++++|++|+|++|.+++
T Consensus 391 ~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~ 468 (876)
T 4ecn_A 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVD 468 (876)
T ss_dssp HTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSS
T ss_pred hhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCccccc
Confidence 0000 000000000 00001111222222222 44443 443 34444444444444444444
Q ss_pred -----------cccccccc--CCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCC-CCC-ccCCc-----cccc
Q 044158 141 -----------LVVPKDYR--GLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNN-FAK-TVTTT-----QGLC 200 (892)
Q Consensus 141 -----------~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~-----~~l~ 200 (892)
.. |..++ ++++|++|+|++|.+.+. +|..++++++|++|++++|. +++ .+|.. ..+.
T Consensus 469 ~~~~s~n~~~g~i-P~~l~f~~L~~L~~L~Ls~N~l~~~--iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~ 545 (876)
T 4ecn_A 469 WEDANSDYAKQYE-NEELSWSNLKDLTDVELYNCPNMTQ--LPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDED 545 (876)
T ss_dssp CSCTTSHHHHHHT-TSCCCGGGCTTCCEEEEESCTTCCS--CCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTT
T ss_pred ccccccccccccC-ChhhhhccCCCCCEEECcCCCCCcc--ChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhccc
Confidence 12 22233 555555555555555444 45555555555555555555 444 22220 0122
Q ss_pred CCCCCcEEEccCCcCccCccc--cccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCC
Q 044158 201 ELAHLQELYIDHNDFIGSLPW--CLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSK 278 (892)
Q Consensus 201 ~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~ 278 (892)
.+++|++|++++|.+. .+|. .++++++|+.|++++|+++ .+ + .++.+++|+.|++++|.+. .++. .+.++++
T Consensus 546 ~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~l-p-~~~~L~~L~~L~Ls~N~l~-~lp~-~l~~l~~ 619 (876)
T 4ecn_A 546 TGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HL-E-AFGTNVKLTDLKLDYNQIE-EIPE-DFCAFTD 619 (876)
T ss_dssp TTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BC-C-CCCTTSEESEEECCSSCCS-CCCT-TSCEECT
T ss_pred ccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cc-h-hhcCCCcceEEECcCCccc-cchH-HHhhccc
Confidence 3446666666666666 5555 6666666666666666665 34 3 5666666666666666554 2221 1222222
Q ss_pred ccEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcC--CC
Q 044158 279 LKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENN--TN 356 (892)
Q Consensus 279 L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~--~~ 356 (892)
+|++|++++|.+. .+|.. +... ++
T Consensus 620 ----------------------------------------------------~L~~L~Ls~N~L~-~lp~~-~~~~~~~~ 645 (876)
T 4ecn_A 620 ----------------------------------------------------QVEGLGFSHNKLK-YIPNI-FNAKSVYV 645 (876)
T ss_dssp ----------------------------------------------------TCCEEECCSSCCC-SCCSC-CCTTCSSC
T ss_pred ----------------------------------------------------cCCEEECcCCCCC-cCchh-hhccccCC
Confidence 0333333333332 22321 1111 12
Q ss_pred CCEEEccCCcCcCCCCCC---CC--CCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCc
Q 044158 357 LRSIILANNSLSGPFRLP---TR--SRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLI 431 (892)
Q Consensus 357 L~~L~L~~n~l~~~~~~~---~~--~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 431 (892)
|+.|++++|.+.+..+.. .. ..++|+.|++++|.++ .+|..++..+++|+.|++++|.+.
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-------------- 710 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-------------- 710 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS--------------
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC--------------
Confidence 444444444443322110 01 1234555555555554 445444433445555555555444
Q ss_pred EEECcCCcCccccchhHhh-------cCccCcEEEccCCccccccccccc--ccCCCcEEeecCccCcCCCCcccccCCC
Q 044158 432 YLDLSNNQLTGEIPEHLAM-------GCFNLEYLLLSNNSLQGQLFSKKI--NLTKLKRLNLDGNHFIGGIPESLSNCSS 502 (892)
Q Consensus 432 ~L~L~~n~l~~~i~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~l~~ 502 (892)
.+|...+. ++++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++.+ +|..+..+++
T Consensus 711 -----------~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~ 777 (876)
T 4ecn_A 711 -----------SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ 777 (876)
T ss_dssp -----------CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTT
T ss_pred -----------ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCC
Confidence 33333221 1224555555555544 3334443 55555555555555554 4555556666
Q ss_pred CcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEcc
Q 044158 503 LQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLC 582 (892)
Q Consensus 503 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~ 582 (892)
|+.|+|++|+ ++++|++.+.+|..+..+++|++|+|++|++. .+|..+. ++|+.|+|+
T Consensus 778 L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~--~Ip~~l~--~~L~~LdLs 835 (876)
T 4ecn_A 778 LKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIR--KVDEKLT--PQLYILDIA 835 (876)
T ss_dssp CCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC--BCCSCCC--SSSCEEECC
T ss_pred CCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCCC--ccCHhhc--CCCCEEECC
Confidence 6666665544 33456666666666666666777777777663 4444433 466777777
Q ss_pred CCccCccCChhhhcCCCCCEEeccccccc
Q 044158 583 NNRLNGNIPNWMGRLSQLRYLILANNNFE 611 (892)
Q Consensus 583 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 611 (892)
+|++....+..+.....+..+.|.+|+..
T Consensus 836 ~N~l~~i~~~~~~~~~~~~~~~L~~n~~~ 864 (876)
T 4ecn_A 836 DNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864 (876)
T ss_dssp SCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred CCCCCccChHHccccccchheeecCCCcc
Confidence 77666555555544444555555555544
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-45 Score=429.52 Aligned_cols=491 Identities=20% Similarity=0.203 Sum_probs=331.9
Q ss_pred CEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEE
Q 044158 129 EGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQEL 208 (892)
Q Consensus 129 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L 208 (892)
...+.+++.++.+ |..+. ++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+. .++.+++|++|
T Consensus 8 ~~c~~~~~~l~~i--p~~~~--~~L~~L~Ls~n~l~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L 79 (549)
T 2z81_A 8 GVCDGRSRSFTSI--PSGLT--AAMKSLDLSFNKITYI--GHGDLRACANLQVLILKSSRINTIEGD--AFYSLGSLEHL 79 (549)
T ss_dssp SEEECTTSCCSSC--CSCCC--TTCCEEECCSSCCCEE--CSSTTSSCTTCCEEECTTSCCCEECTT--TTTTCTTCCEE
T ss_pred ceEECCCCccccc--cccCC--CCccEEECcCCccCcc--ChhhhhcCCcccEEECCCCCcCccChh--hccccccCCEE
Confidence 3456667777654 22232 6777777777777654 445666777777777777776655544 56667777777
Q ss_pred EccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCcc
Q 044158 209 YIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQ 288 (892)
Q Consensus 209 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~ 288 (892)
++++|.+++..+..++++++|++|++++|.+++.-.+..++.+++|++|++++|.
T Consensus 80 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~------------------------- 134 (549)
T 2z81_A 80 DLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE------------------------- 134 (549)
T ss_dssp ECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-------------------------
T ss_pred ECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc-------------------------
Confidence 7777777666666666677777777777666542113345555555555555543
Q ss_pred ccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCc
Q 044158 289 IFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLS 368 (892)
Q Consensus 289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~ 368 (892)
..+.+|...++++++|++|++++|.++
T Consensus 135 -----------------------------------------------------~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 135 -----------------------------------------------------TFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp -----------------------------------------------------SCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred -----------------------------------------------------cccccCHhhhhcccccCeeeccCCccc
Confidence 222333333556777777777777777
Q ss_pred CCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccC--c-hhccCCCCCcEEECcCCcCccccc
Q 044158 369 GPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSI--P-SSFGDMNSLIYLDLSNNQLTGEIP 445 (892)
Q Consensus 369 ~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~--p-~~~~~l~~L~~L~L~~n~l~~~i~ 445 (892)
+..+..+..+++|++|+++.|.+. .+|..++..+++|++|++++|.+.+.. | .....+++|+.|++++|.+++..+
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 240 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHH
T ss_pred ccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHH
Confidence 777777778888888888888876 677776666889999999999887642 1 223456788888888887775554
Q ss_pred hhHh---hcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCC-----c
Q 044158 446 EHLA---MGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGS-----I 517 (892)
Q Consensus 446 ~~~~---~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~ 517 (892)
..+. ..+++|+.+++++|.+.+...-. ......+..+++|+.|++.++.+... +
T Consensus 241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~------------------~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l 302 (549)
T 2z81_A 241 NELLKLLRYILELSEVEFDDCTLNGLGDFN------------------PSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302 (549)
T ss_dssp HHHHGGGGGCTTCCEEEEESCEEECCSCCC------------------CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCC
T ss_pred HHHHHHhhhhcccccccccccccccccccc------------------ccchhhhhhhcccccccccccccchhhhcccc
Confidence 4332 23455666666666554421000 00012234455555666655554321 1
Q ss_pred cccccCCCCCcEEECCCCcccCCCcccc-cCCCCCcEEeCCCCccCCCccc---ccccCCCCccEEEccCCccCccCC--
Q 044158 518 PTWMGNISFLDAIIMPDNHLEGPIPSEF-CQLDYLEILDLSKNNIAGRPLN---GAFSKCSYLLTLDLCNNRLNGNIP-- 591 (892)
Q Consensus 518 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~---~~~~~~~~L~~L~L~~n~l~~~~p-- 591 (892)
+..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|++++ .+| ..++.+++|++|++++|++++..+
T Consensus 303 ~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 380 (549)
T 2z81_A 303 STVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVE-EYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG 380 (549)
T ss_dssp CHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCH-HHHHHHTCTTSSTTCCEEECTTSCCCCHHHHH
T ss_pred hhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcccc-ccccchhhhhccccCcEEEccCCcccccccch
Confidence 111223456777777777765 455544 467778888888887776 322 236677888888888888875432
Q ss_pred hhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccC
Q 044158 592 NWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNV 671 (892)
Q Consensus 592 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (892)
..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+
T Consensus 381 ~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~----------------------------- 429 (549)
T 2z81_A 381 EILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI----------------------------- 429 (549)
T ss_dssp HHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS-----------------------------
T ss_pred hhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh-----------------------------
Confidence 45778888888888888888 67878888889999999999886 333211
Q ss_pred CCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEE
Q 044158 672 GPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESL 751 (892)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 751 (892)
.++|+.||+++|++++.+ +.+++|++|+|++|+++ .+|. .+.+++|+.|
T Consensus 430 -------------------------~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L 478 (549)
T 2z81_A 430 -------------------------PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVM 478 (549)
T ss_dssp -------------------------CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEE
T ss_pred -------------------------cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEE
Confidence 125888999999998753 57889999999999998 6776 4678999999
Q ss_pred ECCCCcCcccCCccccCCCCCCEEEccCCcccccCCc
Q 044158 752 DLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPE 788 (892)
Q Consensus 752 dLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 788 (892)
||++|++++.+|..+..+++|+.|++++|+++|.+|.
T Consensus 479 ~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 479 KISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp ECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred ecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 9999999999998899999999999999999998884
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.5e-47 Score=443.88 Aligned_cols=333 Identities=19% Similarity=0.265 Sum_probs=230.7
Q ss_pred Cchhcc--CCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCc-ccc-ccccccccc------CCCcEEeecCccC
Q 044158 420 IPSSFG--DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNS-LQG-QLFSKKINL------TKLKRLNLDGNHF 489 (892)
Q Consensus 420 ~p~~~~--~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~L~~n~~ 489 (892)
+|..++ ++++|++|++++|++.+.+|..+ .++++|++|++++|+ +++ .+|..+..+ ++|++|++++|++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l 317 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCC
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcC
Confidence 444444 44444444444444444444333 234444444444444 444 444444333 6666666666666
Q ss_pred cCCCCc--ccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCC-CcEEeCCCCccCCCcc
Q 044158 490 IGGIPE--SLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDY-LEILDLSKNNIAGRPL 566 (892)
Q Consensus 490 ~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~ 566 (892)
+ .+|. .++++++|++|++++|+++|.+| .+..+++|+.|++++|+++ .+|..+..+++ |++|++++|.++ .+
T Consensus 318 ~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~--~l 392 (636)
T 4eco_A 318 K-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK--YI 392 (636)
T ss_dssp S-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS--SC
T ss_pred C-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc--cc
Confidence 6 5555 66666666666666666666666 6666666666666666666 56666777777 777777777776 34
Q ss_pred cccccCCC--CccEEEccCCccCccCChhhh-------cCCCCCEEecccccccccCCc-cccCCCCCCEEEcCCCcCCC
Q 044158 567 NGAFSKCS--YLLTLDLCNNRLNGNIPNWMG-------RLSQLRYLILANNNFEGEVPL-RLCQLQKLRLLDLSHNNFSG 636 (892)
Q Consensus 567 ~~~~~~~~--~L~~L~L~~n~l~~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~g 636 (892)
|..+..++ +|++|++++|++++.+|..+. .+++|++|++++|++++ +|. .+..+++|++|+|++|+++
T Consensus 393 p~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N~l~- 470 (636)
T 4eco_A 393 PNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGNMLT- 470 (636)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSSCCS-
T ss_pred chhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCCCCC-
Confidence 55555544 777788888877777777776 66788888888888874 444 3455788888888888887
Q ss_pred CCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCc
Q 044158 637 QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPS 716 (892)
Q Consensus 637 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 716 (892)
.+|......... ....+++|+.|++++|+++ .+|.
T Consensus 471 ~i~~~~~~~~~~--------------------------------------------~~~~l~~L~~L~Ls~N~l~-~lp~ 505 (636)
T 4eco_A 471 EIPKNSLKDENE--------------------------------------------NFKNTYLLTSIDLRFNKLT-KLSD 505 (636)
T ss_dssp BCCSSSSEETTE--------------------------------------------ECTTGGGCCEEECCSSCCC-BCCG
T ss_pred CcCHHHhccccc--------------------------------------------cccccCCccEEECcCCcCC-ccCh
Confidence 666543321100 0012346888999999998 7888
Q ss_pred ccc--ccCCCCEEEccCccCCccccccccCCCCCCEEEC------CCCcCcccCCccccCCCCCCEEEccCCcccccCCc
Q 044158 717 RIG--ELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDL------SYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPE 788 (892)
Q Consensus 717 ~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdL------s~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 788 (892)
.+. .+++|+.|+|++|++++ +|..++++++|+.|+| ++|++.+.+|..+.++++|+.|++++|++ +.+|.
T Consensus 506 ~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~ 583 (636)
T 4eco_A 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNE 583 (636)
T ss_dssp GGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCS
T ss_pred hhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCH
Confidence 887 89999999999999997 8889999999999999 56889999999999999999999999999 78897
Q ss_pred cccccCCCCcccccCCCCCCC
Q 044158 789 RIAQFATFDEDSYEGNPFLCG 809 (892)
Q Consensus 789 ~~~~~~~~~~~~~~gN~~lc~ 809 (892)
.+. ..+...++++||+.|-
T Consensus 584 ~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 584 KIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCC--TTCCEEECCSCTTCEE
T ss_pred hHh--CcCCEEECcCCCCccc
Confidence 533 6788889999999874
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6.5e-45 Score=419.96 Aligned_cols=351 Identities=20% Similarity=0.201 Sum_probs=236.3
Q ss_pred hhcCCCCCEEEccCCcCcCCCCCCCCCCCCc--cEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCC
Q 044158 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNI--IALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMN 428 (892)
Q Consensus 351 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L--~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 428 (892)
++++++|++|++++|.+++ ..+..+++| ++|++++|.+.+ .+..|..+..+.
T Consensus 111 ~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~-----------------------~~~~~~~l~~l~ 164 (520)
T 2z7x_B 111 FGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYG-----------------------EKEDPEGLQDFN 164 (520)
T ss_dssp GGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTT-----------------------SSCCTTTTTTCC
T ss_pred hccCCcceEEEecCcccch---hhccccccceeeEEEeecccccc-----------------------cccccccccccc
Confidence 4566666666666666553 223333444 555555555400 334444443332
Q ss_pred -CCcEEECcCCcCccccchhHhhcCccCcEEEccCCc-------ccccccccccccCCCcEEeecCccCcCCCCcccc--
Q 044158 429 -SLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNS-------LQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLS-- 498 (892)
Q Consensus 429 -~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-- 498 (892)
....+++++|.+.+.++...+..+++|+.|++++|. +.+.++ .+..+++|+.|++++|.+.+..+..+.
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHH
Confidence 122344455554444444444445555555555554 444433 455566666666666555432221111
Q ss_pred -cCCCCcEEEccCCcCCCCccccc-----cCCCCCcEEECCCCcccCCCc-ccccCC---CCCcEEeCCCCccCCCcccc
Q 044158 499 -NCSSLQGLYISDNDISGSIPTWM-----GNISFLDAIIMPDNHLEGPIP-SEFCQL---DYLEILDLSKNNIAGRPLNG 568 (892)
Q Consensus 499 -~l~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~~-~~~~~l---~~L~~L~Ls~n~l~~~~~~~ 568 (892)
.+++|++|++++|++++.+|..+ ..++.|+.++++.|.+ .+| ..+..+ .+|+.|++++|.+.....
T Consensus 244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-- 319 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-- 319 (520)
T ss_dssp HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC--
T ss_pred hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccc--
Confidence 13466666666666666666665 6666677777777766 334 334333 568888888888875332
Q ss_pred cccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccc--cCCccccCCCCCCEEEcCCCcCCCCCCccccCCc
Q 044158 569 AFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEG--EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTS 646 (892)
Q Consensus 569 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~ 646 (892)
+..+++|++|++++|++++.+|.+++.+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|....
T Consensus 320 -~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~--- 395 (520)
T 2z7x_B 320 -PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDC--- 395 (520)
T ss_dssp -CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSC---
T ss_pred -hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchh---
Confidence 2677889999999999988888888889999999999999886 5567788899999999999998876664311
Q ss_pred ccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCE
Q 044158 647 LHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHT 726 (892)
Q Consensus 647 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 726 (892)
..+++|+.|++++|++++.+|..+. ++|+.
T Consensus 396 ------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~ 425 (520)
T 2z7x_B 396 ------------------------------------------------SWTKSLLSLNMSSNILTDTIFRCLP--PRIKV 425 (520)
T ss_dssp ------------------------------------------------CCCTTCCEEECCSSCCCGGGGGSCC--TTCCE
T ss_pred ------------------------------------------------ccCccCCEEECcCCCCCcchhhhhc--ccCCE
Confidence 1234688899999999888887765 78999
Q ss_pred EEccCccCCccccccccCCCCCCEEECCCCcCcccCCcc-ccCCCCCCEEEccCCcccccCCc
Q 044158 727 LNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPR-LVELNALAVFTVAHNNLSGKIPE 788 (892)
Q Consensus 727 L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~l~ls~N~l~g~ip~ 788 (892)
|+|++|+++ .+|..+..+++|+.||+++|+++ .+|.. +..+++|+.|++++|+++|.++.
T Consensus 426 L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 426 LDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp EECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred EECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 999999999 78888889999999999999999 56665 88999999999999999987763
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.5e-44 Score=424.90 Aligned_cols=358 Identities=20% Similarity=0.278 Sum_probs=177.5
Q ss_pred CcCCCCCchhhhhcCCCCcEEECcCCcCCc-----------------cCchhcc--CCCCCcEEECcCCcCccccchhHh
Q 044158 389 NKLQGHIPVEIGKVLPNLGFLTISFNAFNG-----------------SIPSSFG--DMNSLIYLDLSNNQLTGEIPEHLA 449 (892)
Q Consensus 389 n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~-----------------~~p~~~~--~l~~L~~L~L~~n~l~~~i~~~~~ 449 (892)
|++++ +|..+.. +++|++|+|++|.+++ .+|..++ ++++|++|+|++|++.+.+|..+
T Consensus 435 N~L~~-IP~~l~~-L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l- 511 (876)
T 4ecn_A 435 NRITF-ISKAIQR-LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL- 511 (876)
T ss_dssp CEEEE-ECGGGGG-CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-
T ss_pred Ccccc-hhHHHhc-CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-
Confidence 44443 5554443 5555555555555554 2455544 55555555555555555555433
Q ss_pred hcCccCcEEEccCCc-ccc-cccccccccC-------CCcEEeecCccCcCCCCc--ccccCCCCcEEEccCCcCCCCcc
Q 044158 450 MGCFNLEYLLLSNNS-LQG-QLFSKKINLT-------KLKRLNLDGNHFIGGIPE--SLSNCSSLQGLYISDNDISGSIP 518 (892)
Q Consensus 450 ~~~~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~ 518 (892)
.++++|+.|++++|+ +++ .+|..+..++ +|+.|++++|.+. .+|. .+.++++|++|++++|+++ .+|
T Consensus 512 ~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp 589 (876)
T 4ecn_A 512 YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE 589 (876)
T ss_dssp GGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred hCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence 345555555555555 555 4454444333 5555555555555 4454 5555555555555555555 444
Q ss_pred ccccCCCCCcEEECCCCcccCCCcccccCCCC-CcEEeCCCCccCCCcccccccCCCC--ccEEEccCCccCccCChh--
Q 044158 519 TWMGNISFLDAIIMPDNHLEGPIPSEFCQLDY-LEILDLSKNNIAGRPLNGAFSKCSY--LLTLDLCNNRLNGNIPNW-- 593 (892)
Q Consensus 519 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~~~~~--L~~L~L~~n~l~~~~p~~-- 593 (892)
.++.+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|..+..++. |+.|++++|++.+.+|..
T Consensus 590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~--~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~ 665 (876)
T 4ecn_A 590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK--YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISC 665 (876)
T ss_dssp -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC--SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSS
T ss_pred -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC--cCchhhhccccCCCCEEECcCCcCCCccccchh
Confidence 5555555555555555555 45555555555 555555555555 23344444332 555555555555544321
Q ss_pred -hh--cCCCCCEEecccccccccCCccc-cCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccc
Q 044158 594 -MG--RLSQLRYLILANNNFEGEVPLRL-CQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSY 669 (892)
Q Consensus 594 -~~--~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 669 (892)
+. .+++|+.|++++|+++ .+|..+ ..+++|+.|+|++|+++ .+|..+......
T Consensus 666 ~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~--------------------- 722 (876)
T 4ecn_A 666 SMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG--------------------- 722 (876)
T ss_dssp CTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS---------------------
T ss_pred hhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc---------------------
Confidence 11 2235555555555555 333333 24555555555555555 444433211100
Q ss_pred cCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCcccc--ccCCCCEEEccCccCCccccccccCCCC
Q 044158 670 NVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIG--ELIRIHTLNLSRNNLTGTIPVTFSNLRQ 747 (892)
Q Consensus 670 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 747 (892)
....+++|+.|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..++++++
T Consensus 723 -----------------------~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~ 777 (876)
T 4ecn_A 723 -----------------------NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ 777 (876)
T ss_dssp -----------------------CCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTT
T ss_pred -----------------------cccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCC
Confidence 0001223455555555555 4444444 45555555555555554 4445555555
Q ss_pred CCEEECCC------CcCcccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcccccCCCC
Q 044158 748 VESLDLSY------NNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPF 806 (892)
Q Consensus 748 L~~LdLs~------N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~ 806 (892)
|+.|+|++ |++.+.+|..+.++++|+.|++++|++ +.+|..+. ..+...++++||+
T Consensus 778 L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l 839 (876)
T 4ecn_A 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPN 839 (876)
T ss_dssp CCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTT
T ss_pred CCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCC
Confidence 55555543 444555555555555555555555555 44444221 2444444455543
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=5.5e-42 Score=406.79 Aligned_cols=540 Identities=21% Similarity=0.195 Sum_probs=318.5
Q ss_pred EEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEe
Q 044158 53 SLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLD 132 (892)
Q Consensus 53 ~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~ 132 (892)
+.|=++.+++.++.. + -+++++|||++|+|+++.+.+|.++++|++|+|++|.++ .++.++|.++++|++|+
T Consensus 35 ~~~c~~~~l~~vP~~-----l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~ 106 (635)
T 4g8a_A 35 TYQCMELNFYKIPDN-----L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLI 106 (635)
T ss_dssp EEECTTSCCSSCCSS-----S--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred EEECCCCCcCccCCC-----C--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEE
Confidence 345555556555432 1 147888888888888777778888888888888888887 56666788888888888
Q ss_pred CCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccC
Q 044158 133 MSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDH 212 (892)
Q Consensus 133 L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~ 212 (892)
|++|+++++. +..|.++++|++|++++|.++.. .+..++++++|++|++++|.+.+.... ..++.+++|++|++++
T Consensus 107 Ls~N~l~~l~-~~~f~~L~~L~~L~Ls~N~l~~l--~~~~~~~L~~L~~L~Ls~N~l~~~~~~-~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 107 LTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASL--ENFPIGHLKTLKELNVAHNLIQSFKLP-EYFSNLTNLEHLDLSS 182 (635)
T ss_dssp CTTCCCCEEC-GGGGTTCTTCCEEECTTSCCCCS--TTCCCTTCTTCCEEECCSSCCCCCCCC-GGGGGCTTCCEEECCS
T ss_pred ccCCcCCCCC-HHHhcCCCCCCEEECCCCcCCCC--ChhhhhcCcccCeeccccCccccCCCc-hhhccchhhhhhcccC
Confidence 8888887754 34578888888888888887764 334567777777777777766543211 2455666666666666
Q ss_pred CcCccCccccccCCCCC----cEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEEEccCcc
Q 044158 213 NDFIGSLPWCLANLTSL----RVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIFHGRENQ 288 (892)
Q Consensus 213 n~l~~~~~~~l~~l~~L----~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l~l~~~~ 288 (892)
|.+++..+..+..++++ ..++++.|.+.. +.+.. .....++.+
T Consensus 183 N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~-i~~~~-~~~~~~~~l------------------------------- 229 (635)
T 4g8a_A 183 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGA-FKEIRLHKL------------------------------- 229 (635)
T ss_dssp SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE-ECTTT-TTTCEEEEE-------------------------------
T ss_pred ccccccccccccchhhhhhhhhhhhcccCcccc-cCccc-ccchhhhhh-------------------------------
Confidence 66666555554443322 244455444432 11111 111122222
Q ss_pred ccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCc
Q 044158 289 IFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLS 368 (892)
Q Consensus 289 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~ 368 (892)
++.++.....++...+..+..++...+..+...
T Consensus 230 -----------------------------------------------~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~ 262 (635)
T 4g8a_A 230 -----------------------------------------------TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 262 (635)
T ss_dssp -----------------------------------------------EEESCCSSHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred -----------------------------------------------hhhcccccccccchhhcCCcccccccccccccc
Confidence 233222222233333444455544443322211
Q ss_pred CCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCC---ccCchhccCCCCCcEEECcCCcCccccc
Q 044158 369 GPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFN---GSIPSSFGDMNSLIYLDLSNNQLTGEIP 445 (892)
Q Consensus 369 ~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~---~~~p~~~~~l~~L~~L~L~~n~l~~~i~ 445 (892)
.... +. ......+.....+...++..+... ...+..+..+.+++.+++.++.+. .++
T Consensus 263 ~~~~------------------l~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~ 322 (635)
T 4g8a_A 263 NEGN------------------LE-KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIE-RVK 322 (635)
T ss_dssp TSCC------------------CS-CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEE-ECG
T ss_pred cccc------------------cc-cccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccc-ccc
Confidence 1000 00 000000011222333332222111 112223344455555655555554 222
Q ss_pred hhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCC
Q 044158 446 EHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNIS 525 (892)
Q Consensus 446 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 525 (892)
.. ....+|+.|++.+|.+.+..+. .++.|+.+++..|..... .....+++|+.|++++|.+...
T Consensus 323 ~~--~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~--------- 386 (635)
T 4g8a_A 323 DF--SYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFK--------- 386 (635)
T ss_dssp GG--GSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEE---------
T ss_pred cc--ccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccc---------
Confidence 21 2344555555555554433221 234455555555544322 1223445555555555544311
Q ss_pred CCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCC-hhhhcCCCCCEEe
Q 044158 526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP-NWMGRLSQLRYLI 604 (892)
Q Consensus 526 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~ 604 (892)
+..+..+..+.+|+.++++.|.... .+..+..+++|+.++++.|......+ ..+..+++++.++
T Consensus 387 -------------~~~~~~~~~~~~L~~L~~~~~~~~~--~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ 451 (635)
T 4g8a_A 387 -------------GCCSQSDFGTISLKYLDLSFNGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 451 (635)
T ss_dssp -------------EECCHHHHSCSCCCEEECCSCSEEE--ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEE
T ss_pred -------------cccccchhhhhhhhhhhcccccccc--ccccccccccccchhhhhcccccccccccccccccccccc
Confidence 1233444455566666666665543 23455666677777776666554443 3556677777777
Q ss_pred cccccccccCCccccCCCCCCEEEcCCCcCCC-CCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEe
Q 044158 605 LANNNFEGEVPLRLCQLQKLRLLDLSHNNFSG-QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDF 683 (892)
Q Consensus 605 L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 683 (892)
++.|.+.+..+..+..+++|+.|++++|++.+ .+|..+..
T Consensus 452 ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~--------------------------------------- 492 (635)
T 4g8a_A 452 ISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE--------------------------------------- 492 (635)
T ss_dssp CTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT---------------------------------------
T ss_pred ccccccccccccccccchhhhhhhhhhcccccccCchhhhh---------------------------------------
Confidence 77777777777777777777777777776442 23333222
Q ss_pred eecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCC
Q 044158 684 TTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIP 763 (892)
Q Consensus 684 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip 763 (892)
+++|+.|||++|++++.+|..|+++++|++|+|++|+|++.+|..|+++++|+.|||++|+|++.+|
T Consensus 493 -------------l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 559 (635)
T 4g8a_A 493 -------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK 559 (635)
T ss_dssp -------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCS
T ss_pred -------------ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCH
Confidence 3357778888888888888889999999999999999998888899999999999999999999999
Q ss_pred ccccCC-CCCCEEEccCCcccccCC
Q 044158 764 PRLVEL-NALAVFTVAHNNLSGKIP 787 (892)
Q Consensus 764 ~~l~~l-~~L~~l~ls~N~l~g~ip 787 (892)
..+..+ ++|++|++++|++++...
T Consensus 560 ~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 560 QELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp SCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred HHHHhhhCcCCEEEeeCCCCcccCC
Confidence 999888 689999999999988654
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.8e-43 Score=403.65 Aligned_cols=458 Identities=20% Similarity=0.194 Sum_probs=303.8
Q ss_pred cEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEE
Q 044158 52 ESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGL 131 (892)
Q Consensus 52 ~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L 131 (892)
++||+++|.++.++.. +. ++|++|+|++|.+++..+..|.++++|++|++++|.+++ +++..|+++++|++|
T Consensus 3 ~~l~ls~n~l~~ip~~-----~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L 74 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKD-----LS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY-LDISVFKFNQELEYL 74 (520)
T ss_dssp CEEECTTSCCSSCCCS-----CC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE-EEGGGGTTCTTCCEE
T ss_pred ceEecCCCCccccccc-----cc--ccccEEECCCCcccccChhhccccccccEEecCCCccCC-cChHHhhcccCCCEE
Confidence 4566777776654432 22 677777777777776666677777777777777777763 333367777777777
Q ss_pred eCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCC--cEEE
Q 044158 132 DMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHL--QELY 209 (892)
Q Consensus 132 ~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L--~~L~ 209 (892)
++++|+++++ +.. .+++|++|++++|.+++. ..+..++.+++|++|++++|.+.+. .+..+++| ++|+
T Consensus 75 ~Ls~N~l~~l--p~~--~l~~L~~L~L~~N~l~~~-~~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~~L~ 144 (520)
T 2z7x_B 75 DLSHNKLVKI--SCH--PTVNLKHLDLSFNAFDAL-PICKEFGNMSQLKFLGLSTTHLEKS-----SVLPIAHLNISKVL 144 (520)
T ss_dssp ECCSSCCCEE--ECC--CCCCCSEEECCSSCCSSC-CCCGGGGGCTTCCEEEEEESSCCGG-----GGGGGTTSCEEEEE
T ss_pred ecCCCceeec--Ccc--ccCCccEEeccCCccccc-cchhhhccCCcceEEEecCcccchh-----hccccccceeeEEE
Confidence 7777777653 222 677777777777777652 1345677777777777777766542 35556666 7777
Q ss_pred ccCCcC--ccCccccccCCC-CCcEEeCCCCCcccccCCCcccccccCcEEeccCcc-------ccCCCCchhhcCCCCc
Q 044158 210 IDHNDF--IGSLPWCLANLT-SLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNH-------FQIPMSLEPFFNYSKL 279 (892)
Q Consensus 210 L~~n~l--~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~~~~~~l~~L 279 (892)
+++|.+ .+..|..+..++ +...+++++|.+.+.+....+..+++|+.|++++|. +.+.++ .+..+++|
T Consensus 145 l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L 222 (520)
T 2z7x_B 145 LVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKL 222 (520)
T ss_dssp EEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTC
T ss_pred eecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccch
Confidence 777777 666666666554 344567777777776656667777888888887775 433322 46677777
Q ss_pred cEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhh----hcCC
Q 044158 280 KIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLL----ENNT 355 (892)
Q Consensus 280 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~----~~~~ 355 (892)
+.+++.++.+.+..... ++... ..++|++|++++|.+.|.+|..++ +.++
T Consensus 223 ~~L~l~~~~l~~~~~~~-------------------------~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~ 276 (520)
T 2z7x_B 223 SNLTLNNIETTWNSFIR-------------------------ILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLK 276 (520)
T ss_dssp CEEEEEEEEEEHHHHHH-------------------------HHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCC
T ss_pred hhccccccccCHHHHHH-------------------------HHHHh-hhCcccEEEeecccccCccccchhhcccccCc
Confidence 77777776654321111 00111 123566666666666666666532 5566
Q ss_pred CCCEEEccCCcCcCCCCCCCCCC---CCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcE
Q 044158 356 NLRSIILANNSLSGPFRLPTRSR---KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIY 432 (892)
Q Consensus 356 ~L~~L~L~~n~l~~~~~~~~~~~---~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 432 (892)
.|+.+++++|.+ ......+..+ .+|+.|++++|.+.+ ++ ....+++|++|++++|.+++..|..++.+++|++
T Consensus 277 ~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~-~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 352 (520)
T 2z7x_B 277 ALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVH-ML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352 (520)
T ss_dssp EEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCC-CC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCE
T ss_pred eeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccc-cc--chhhCCcccEEEeECCccChhhhhhhccCCCCCE
Confidence 666666666666 1111111111 457777777777652 22 1123678888888888888777777888888888
Q ss_pred EECcCCcCcc--ccchhHhhcCccCcEEEccCCcccccccc-cccccCCCcEEeecCccCcCCCCcccccCCCCcEEEcc
Q 044158 433 LDLSNNQLTG--EIPEHLAMGCFNLEYLLLSNNSLQGQLFS-KKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYIS 509 (892)
Q Consensus 433 L~L~~n~l~~--~i~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 509 (892)
|++++|++++ .+|.. +..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+. ++|++|+++
T Consensus 353 L~L~~N~l~~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls 429 (520)
T 2z7x_B 353 LILQMNQLKELSKIAEM-TTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH 429 (520)
T ss_dssp EECCSSCCCBHHHHHHH-HTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECC
T ss_pred EEccCCccCccccchHH-HhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECC
Confidence 8888888873 23333 35778888888888888874444 477788888888888888777666554 688888888
Q ss_pred CCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCC
Q 044158 510 DNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 563 (892)
Q Consensus 510 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 563 (892)
+|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++
T Consensus 430 ~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 430 SNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 88888 677777788888888888888884333348888899999999998886
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.4e-41 Score=400.01 Aligned_cols=516 Identities=22% Similarity=0.199 Sum_probs=385.3
Q ss_pred CCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCC
Q 044158 49 QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNL 128 (892)
Q Consensus 49 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L 128 (892)
+++++|||++|.|+++++ .+|.++++|++|+|++|+|+++.+.+|.++++|++|+|++|+++ .+|...|.++++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~----~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGS----YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEECT----TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCCH----HHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCC
Confidence 479999999999987765 35899999999999999999888889999999999999999998 6787789999999
Q ss_pred CEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCC----
Q 044158 129 EGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAH---- 204 (892)
Q Consensus 129 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~---- 204 (892)
++|+|++|+++++. +..|+++++|++|++++|.++... .+..++.+++|++|++++|.+.+..+. .+..+.+
T Consensus 127 ~~L~Ls~N~l~~l~-~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L~~l~~~ 202 (635)
T 4g8a_A 127 QKLVAVETNLASLE-NFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCT--DLRVLHQMPLL 202 (635)
T ss_dssp CEEECTTSCCCCST-TCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEECGG--GGHHHHTCTTC
T ss_pred CEEECCCCcCCCCC-hhhhhcCcccCeeccccCccccCC-CchhhccchhhhhhcccCccccccccc--cccchhhhhhh
Confidence 99999999999875 445999999999999999997642 467788999999999999999876554 4444433
Q ss_pred CcEEEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCC-----CchhhcCCCCc
Q 044158 205 LQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPM-----SLEPFFNYSKL 279 (892)
Q Consensus 205 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-----~~~~~~~l~~L 279 (892)
...++++.|.+....+..+ ....++.+++.+|.....+....+..+..++...+..+...... ....+..+..+
T Consensus 203 ~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 203 NLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence 3478899998876555544 44567888888886654333344556666666555433222110 01111111111
Q ss_pred cEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCE
Q 044158 280 KIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRS 359 (892)
Q Consensus 280 ~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~ 359 (892)
....+..+.. .......+. .+.....++.
T Consensus 282 ~~~~l~~~~~--------------------------------------------------~~~~~~~~~-~~~~~~~l~~ 310 (635)
T 4g8a_A 282 TIEEFRLAYL--------------------------------------------------DYYLDGIID-LFNCLTNVSS 310 (635)
T ss_dssp EEEEEEEECC--------------------------------------------------CSCEEECTT-TTGGGTTCSE
T ss_pred hhhhhhhhhh--------------------------------------------------cccccchhh-hhhhhccccc
Confidence 1111111100 000001111 1334556666
Q ss_pred EEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCc
Q 044158 360 IILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQ 439 (892)
Q Consensus 360 L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 439 (892)
+.+.++.+.... .+.....++.|++.+|.+. .++.. .++.|+.+++..|..... .....+++|+.+++++|.
T Consensus 311 l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~-~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~ 382 (635)
T 4g8a_A 311 FSLVSVTIERVK--DFSYNFGWQHLELVNCKFG-QFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNG 382 (635)
T ss_dssp EEEESCEEEECG--GGGSCCCCSEEEEESCEES-SCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSC
T ss_pred cccccccccccc--ccccchhhhhhhccccccc-CcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccc
Confidence 666666554422 2344556777777777765 33322 256788888888776533 234567888888888887
Q ss_pred Ccc--ccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCC-cccccCCCCcEEEccCCcCCCC
Q 044158 440 LTG--EIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIP-ESLSNCSSLQGLYISDNDISGS 516 (892)
Q Consensus 440 l~~--~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 516 (892)
+.. ..+... ..+.+|+.++++.+..... +..+..+++|+.+++..+......+ ..+..+++++.++++.|.+.+.
T Consensus 383 l~~~~~~~~~~-~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~ 460 (635)
T 4g8a_A 383 LSFKGCCSQSD-FGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 460 (635)
T ss_dssp CBEEEECCHHH-HSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEEC
T ss_pred cccccccccch-hhhhhhhhhhccccccccc-cccccccccccchhhhhccccccccccccccccccccccccccccccc
Confidence 752 234333 4678899999988887653 4567788999999998887766554 5678899999999999999988
Q ss_pred ccccccCCCCCcEEECCCCcc-cCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhh
Q 044158 517 IPTWMGNISFLDAIIMPDNHL-EGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMG 595 (892)
Q Consensus 517 ~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~ 595 (892)
.+..+..++.++.|++++|.+ .+..|..|..+++|++|+|++|++++ ..|..|.++++|++|+|++|++++..|..|+
T Consensus 461 ~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~-l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~ 539 (635)
T 4g8a_A 461 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 539 (635)
T ss_dssp CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCBCCCGGGT
T ss_pred cccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC-cChHHHcCCCCCCEEECCCCcCCCCChhHHh
Confidence 888999999999999999975 44577889999999999999999998 4578899999999999999999988889999
Q ss_pred cCCCCCEEecccccccccCCccccCC-CCCCEEEcCCCcCCC
Q 044158 596 RLSQLRYLILANNNFEGEVPLRLCQL-QKLRLLDLSHNNFSG 636 (892)
Q Consensus 596 ~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~g 636 (892)
++++|++|+|++|++++..|..+..+ ++|++|+|++|+++.
T Consensus 540 ~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 540 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99999999999999999999999888 689999999999984
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.5e-41 Score=393.14 Aligned_cols=352 Identities=17% Similarity=0.157 Sum_probs=228.0
Q ss_pred hhcCCCCCEEEccCCcCcCCCCCCCCCCCCc--cEEEccCCcC--CCCCchhhhhcCC-CCcEEECcCCcCCccCch-hc
Q 044158 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNI--IALDISYNKL--QGHIPVEIGKVLP-NLGFLTISFNAFNGSIPS-SF 424 (892)
Q Consensus 351 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L--~~L~l~~n~l--~~~i~~~~~~~l~-~L~~L~L~~n~~~~~~p~-~~ 424 (892)
++++++|++|++++|.+++ ..+..+++| ++|++++|.+ ++..|..+.. +. ..-.++++.|.+.+.++. .+
T Consensus 142 ~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~-l~~~~l~l~l~~n~~~~~~~~~~~ 217 (562)
T 3a79_B 142 FGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCILLDLVSYHIKGGETESLQI-PNTTVLHLVFHPNSLFSVQVNMSV 217 (562)
T ss_dssp GGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEE-CCEEEEEEEECSSSCCCCCCEEEE
T ss_pred hcccCcccEEecCCCcccc---CchhhhhhceeeEEEeecccccccccCcccccc-cCcceEEEEecCccchhhhhhhcc
Confidence 5667777777777777764 233333333 6666666666 4444433322 11 111334455554443332 23
Q ss_pred cCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCC----CcccccC
Q 044158 425 GDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGI----PESLSNC 500 (892)
Q Consensus 425 ~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~----~~~~~~l 500 (892)
..+++|+.+++++|+..-. .+.+ ....+..+++|+.+++.++.+.+.. +.. ...
T Consensus 218 ~~l~~L~~L~l~~n~~~~~--------------------~l~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~ 275 (562)
T 3a79_B 218 NALGHLQLSNIKLNDENCQ--------------------RLMT-FLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWP 275 (562)
T ss_dssp SSEEEEEEEEEECCSTTHH--------------------HHHH-HHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTT
T ss_pred cccceEEEecccccccccc--------------------hHHH-HHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhc
Confidence 3445555555555431000 0111 1122334444444444444433211 111 112
Q ss_pred CCCcEEEccCCcCCCCccccc-----cCCCCCcEEECCCCcccCCCc-cccc---CCCCCcEEeCCCCccCCCccccccc
Q 044158 501 SSLQGLYISDNDISGSIPTWM-----GNISFLDAIIMPDNHLEGPIP-SEFC---QLDYLEILDLSKNNIAGRPLNGAFS 571 (892)
Q Consensus 501 ~~L~~L~L~~n~l~~~~~~~~-----~~~~~L~~L~L~~n~l~~~~~-~~~~---~l~~L~~L~Ls~n~l~~~~~~~~~~ 571 (892)
++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+| ..+. ...+|++|++++|.+.... ...
T Consensus 276 ~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~---~~~ 350 (562)
T 3a79_B 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV---CPP 350 (562)
T ss_dssp SSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC---CCS
T ss_pred ccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc---Ccc
Confidence 355555555555555555544 4444555555555554 233 2222 1256888999988886533 226
Q ss_pred CCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccc--cCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccc
Q 044158 572 KCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEG--EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHR 649 (892)
Q Consensus 572 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~ 649 (892)
.+++|++|++++|++++.+|..++.+++|++|++++|++++ .+|..+..+++|++|++++|++++.+|....
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~------ 424 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC------ 424 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC------
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh------
Confidence 78899999999999998888889999999999999999986 3356788999999999999999876765321
Q ss_pred cccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEc
Q 044158 650 EEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNL 729 (892)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 729 (892)
..+++|+.|++++|++++.+|..+. ++|+.|+|
T Consensus 425 ---------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L 457 (562)
T 3a79_B 425 ---------------------------------------------AWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL 457 (562)
T ss_dssp ---------------------------------------------CCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEEC
T ss_pred ---------------------------------------------cCcccCCEEECCCCCCCcchhhhhc--CcCCEEEC
Confidence 1234689999999999988887665 78999999
Q ss_pred cCccCCccccccccCCCCCCEEECCCCcCcccCCcc-ccCCCCCCEEEccCCcccccCCc
Q 044158 730 SRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPR-LVELNALAVFTVAHNNLSGKIPE 788 (892)
Q Consensus 730 s~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~l~ls~N~l~g~ip~ 788 (892)
++|+++ .+|..+..+++|+.|||++|+++ .+|.. +..+++|+.+++++|+++|.+|.
T Consensus 458 ~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 458 HNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp CSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHH
T ss_pred CCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcch
Confidence 999999 78888789999999999999999 56665 89999999999999999998774
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.1e-41 Score=390.49 Aligned_cols=466 Identities=22% Similarity=0.242 Sum_probs=308.3
Q ss_pred CCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCC
Q 044158 49 QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNL 128 (892)
Q Consensus 49 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L 128 (892)
...+++|++++.+++++.. + .++|++|+|++|.+++..+..|.++++|++|++++|.+++ +++..|.++++|
T Consensus 31 ~~~~~l~ls~~~L~~ip~~-----~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L 102 (562)
T 3a79_B 31 ELESMVDYSNRNLTHVPKD-----L--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-LDFHVFLFNQDL 102 (562)
T ss_dssp --CCEEECTTSCCCSCCTT-----S--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-ECTTTTTTCTTC
T ss_pred CCCcEEEcCCCCCccCCCC-----C--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-CCHHHhCCCCCC
Confidence 3446777777777765432 2 2677788888888777777777788888888888887773 444467777888
Q ss_pred CEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCC--c
Q 044158 129 EGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHL--Q 206 (892)
Q Consensus 129 ~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L--~ 206 (892)
++|++++|.++.+ +.. .+++|++|++++|.++... .+..++++++|++|++++|.+.+. .+..+++| +
T Consensus 103 ~~L~Ls~N~l~~l--p~~--~l~~L~~L~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~L~ 172 (562)
T 3a79_B 103 EYLDVSHNRLQNI--SCC--PMASLRHLDLSFNDFDVLP-VCKEFGNLTKLTFLGLSAAKFRQL-----DLLPVAHLHLS 172 (562)
T ss_dssp CEEECTTSCCCEE--CSC--CCTTCSEEECCSSCCSBCC-CCGGGGGCTTCCEEEEECSBCCTT-----TTGGGTTSCEE
T ss_pred CEEECCCCcCCcc--Ccc--ccccCCEEECCCCCccccC-chHhhcccCcccEEecCCCccccC-----chhhhhhceee
Confidence 8888888877754 222 6777777777777776531 235677777777777777776542 23444444 8
Q ss_pred EEEccCCcC--ccCccccccCCC--CCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCCCccEE
Q 044158 207 ELYIDHNDF--IGSLPWCLANLT--SLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYSKLKIF 282 (892)
Q Consensus 207 ~L~L~~n~l--~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~l 282 (892)
+|++++|.+ ++..|..+..++ .+ .+++++|.+.+.+....+..+++|+.+++++|+... .
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~----~----------- 236 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC----Q----------- 236 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTH----H-----------
T ss_pred EEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEeccccccccc----c-----------
Confidence 888888777 666666665543 22 345566665554433344455555555555542110 0
Q ss_pred EccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEc
Q 044158 283 HGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIIL 362 (892)
Q Consensus 283 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L 362 (892)
.+.+.++ .+..++.|+.+++
T Consensus 237 ----------------------------------------------------------~l~~~~~--~l~~l~~L~~L~L 256 (562)
T 3a79_B 237 ----------------------------------------------------------RLMTFLS--ELTRGPTLLNVTL 256 (562)
T ss_dssp ----------------------------------------------------------HHHHHHH--HHHSCSSCEEEEE
T ss_pred ----------------------------------------------------------hHHHHHH--HHhccCcceEEEe
Confidence 0000011 1233444444443
Q ss_pred cCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhc-----cCCCCCcEEECcC
Q 044158 363 ANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSF-----GDMNSLIYLDLSN 437 (892)
Q Consensus 363 ~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-----~~l~~L~~L~L~~ 437 (892)
.++.+. ++.+. .++.... .++|++|++++|.+.+.+|..+ ..++.|+.+++..
T Consensus 257 ~~~~l~-------------------~~~~~-~~~~~~~--~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~ 314 (562)
T 3a79_B 257 QHIETT-------------------WKCSV-KLFQFFW--PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKN 314 (562)
T ss_dssp EEEEEC-------------------HHHHH-HHHHHHT--TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEE
T ss_pred cCCcCc-------------------HHHHH-HHHHhhh--cccccEEEEeccEeeccccchhhhcccccchheehhhccc
Confidence 332221 12221 1222221 3466666666666666666555 5555666666666
Q ss_pred CcCccccchhHhhc---CccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCC
Q 044158 438 NQLTGEIPEHLAMG---CFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDIS 514 (892)
Q Consensus 438 n~l~~~i~~~~~~~---~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 514 (892)
+.+ .+|...... ..+|++|++++|.+..... ...+++|++|++++|++++..|..+..+++|++|++++|+++
T Consensus 315 ~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 390 (562)
T 3a79_B 315 QVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390 (562)
T ss_dssp CCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC
T ss_pred cee--ecChhhhhhhhccCcceEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC
Confidence 665 455322211 2568888888887764321 256788899999999988888888888999999999999888
Q ss_pred CC--ccccccCCCCCcEEECCCCcccCCCcc-cccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCC
Q 044158 515 GS--IPTWMGNISFLDAIIMPDNHLEGPIPS-EFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP 591 (892)
Q Consensus 515 ~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 591 (892)
+. +|..+..+++|+.|++++|++++.+|. .+..+++|++|++++|++++ ..+..+. ++|++|++++|+++ .+|
T Consensus 391 ~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~--~~L~~L~L~~N~l~-~ip 466 (562)
T 3a79_B 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTG-SVFRCLP--PKVKVLDLHNNRIM-SIP 466 (562)
T ss_dssp BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCG-GGGSSCC--TTCSEEECCSSCCC-CCC
T ss_pred CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCc-chhhhhc--CcCCEEECCCCcCc-ccC
Confidence 63 356788889999999999999874554 47788999999999999986 4343332 68999999999998 677
Q ss_pred hhhhcCCCCCEEecccccccccCCcc-ccCCCCCCEEEcCCCcCCCCCC
Q 044158 592 NWMGRLSQLRYLILANNNFEGEVPLR-LCQLQKLRLLDLSHNNFSGQIP 639 (892)
Q Consensus 592 ~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~g~~p 639 (892)
..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++++..|
T Consensus 467 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 467 KDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred hhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 77779999999999999999 45555 8899999999999999987654
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.9e-40 Score=372.07 Aligned_cols=372 Identities=21% Similarity=0.173 Sum_probs=248.7
Q ss_pred CEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccC-chhccCCCCCcEEECc
Q 044158 358 RSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSI-PSSFGDMNSLIYLDLS 436 (892)
Q Consensus 358 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~ 436 (892)
+.++.+++.++.... ..++|++|++++|.+++..|..+. .+++|++|++++|.+.+.+ +..|.++++|++|+++
T Consensus 13 ~~~~c~~~~l~~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~-~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLHQVPE----LPAHVNYVDLSLNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCSSCCC----CCTTCCEEECCSSCCCEECTTTTS-SCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcccCCC----CCCccCEEEecCCccCcCChhHhc-cCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 456666666654332 226677777777777744444443 3777777777777776433 4567777777777777
Q ss_pred CCcCccccchhHhhcCccCcEEEccCCccccccccc--ccccCCCcEEeecCccCcCCCCcc-cccCCCCcEEEccCCcC
Q 044158 437 NNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSK--KINLTKLKRLNLDGNHFIGGIPES-LSNCSSLQGLYISDNDI 513 (892)
Q Consensus 437 ~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l 513 (892)
+|++++..|.. +.++++|++|++++|.+++..+.. +..+++|++|++++|.+.+..|.. +.++++|++|++++|++
T Consensus 88 ~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l 166 (455)
T 3v47_A 88 YNQFLQLETGA-FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV 166 (455)
T ss_dssp TCTTCEECTTT-TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred CCccCccChhh-ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence 77777433433 356777777777777777654444 677777777777777777666654 67777777777777777
Q ss_pred CCCccccccCC--CCCcEEECCCCcccCCCccc--------ccCCCCCcEEeCCCCccCCCcccccccCC---CCccEEE
Q 044158 514 SGSIPTWMGNI--SFLDAIIMPDNHLEGPIPSE--------FCQLDYLEILDLSKNNIAGRPLNGAFSKC---SYLLTLD 580 (892)
Q Consensus 514 ~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~--------~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~---~~L~~L~ 580 (892)
++..+..+..+ ..|+.|++++|.+.+..+.. +..+++|++|++++|++++ ..+..+... ++|+.|+
T Consensus 167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~~~~~~~L~~L~ 245 (455)
T 3v47_A 167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKE-SMAKRFFDAIAGTKIQSLI 245 (455)
T ss_dssp SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCH-HHHHHHHHHTTTCCEEEEE
T ss_pred cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccc-cchhhhhccccccceeeEe
Confidence 77777666655 56777777777776544432 2345677777777777765 344444332 6777777
Q ss_pred ccCCccCcc----------CChhhhc--CCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccc
Q 044158 581 LCNNRLNGN----------IPNWMGR--LSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLH 648 (892)
Q Consensus 581 L~~n~l~~~----------~p~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~ 648 (892)
+++|.+.+. .+..+.. .++|++|++++|++++..|..+..+++|++|++++|++++..|..+..
T Consensus 246 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---- 321 (455)
T 3v47_A 246 LSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG---- 321 (455)
T ss_dssp CTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT----
T ss_pred eccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC----
Confidence 777654432 1112222 256777777777777777777777777777777777777555544432
Q ss_pred ccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEE
Q 044158 649 REEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLN 728 (892)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 728 (892)
+++|+.|++++|.+++..|..++.+++|++|+
T Consensus 322 ------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 322 ------------------------------------------------LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLD 353 (455)
T ss_dssp ------------------------------------------------CTTCCEEECCSSCCCEECGGGGTTCTTCCEEE
T ss_pred ------------------------------------------------cccCCEEECCCCccCCcChhHhcCcccCCEEE
Confidence 22577777777777766677777777777777
Q ss_pred ccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCc
Q 044158 729 LSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPE 788 (892)
Q Consensus 729 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 788 (892)
|++|++++..|..|+.+++|++|++++|++++..+..+..+++|+.|++++|+++|.+|.
T Consensus 354 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 354 LSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 777777777777777777777777777777766555667777777777777777777774
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.3e-39 Score=364.92 Aligned_cols=358 Identities=20% Similarity=0.216 Sum_probs=291.8
Q ss_pred CCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEE
Q 044158 355 TNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLD 434 (892)
Q Consensus 355 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 434 (892)
++|++|++++|.+++..+..+..+++|++|++++|.+.+.++...+..+++|++|++++|.+++..|..|+++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 66788888888887777777788888888888888887677666556688888888888888877788888888888888
Q ss_pred CcCCcCccccchh-HhhcCccCcEEEccCCccccccccc-ccccCCCcEEeecCccCcCCCCcccccC--CCCcEEEccC
Q 044158 435 LSNNQLTGEIPEH-LAMGCFNLEYLLLSNNSLQGQLFSK-KINLTKLKRLNLDGNHFIGGIPESLSNC--SSLQGLYISD 510 (892)
Q Consensus 435 L~~n~l~~~i~~~-~~~~~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~~~~l--~~L~~L~L~~ 510 (892)
+++|++++.++.. .+..+++|++|++++|.+++..|.. +..+++|++|++++|++.+..+..+..+ .+|+.|++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 8888887544432 3456888888888888888776765 7788888888888888888777777765 6788888888
Q ss_pred CcCCCCccccc--------cCCCCCcEEECCCCcccCCCcccccCC---CCCcEEeCCCCccCCCcc---------cccc
Q 044158 511 NDISGSIPTWM--------GNISFLDAIIMPDNHLEGPIPSEFCQL---DYLEILDLSKNNIAGRPL---------NGAF 570 (892)
Q Consensus 511 n~l~~~~~~~~--------~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~---------~~~~ 570 (892)
|.+.+..+..+ ..+++|+.|++++|++++..|..+... ++|+.|++++|.+.+... +..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 88876554433 356788888888888888777766543 788888888886554211 1122
Q ss_pred c--CCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccc
Q 044158 571 S--KCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLH 648 (892)
Q Consensus 571 ~--~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~ 648 (892)
. ..++|++|++++|++++..|.+++.+++|++|++++|++++..|..+..+++|++|++++|++++..|..+..
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---- 345 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN---- 345 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT----
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC----
Confidence 2 2368999999999999999999999999999999999999988999999999999999999998665555443
Q ss_pred ccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEE
Q 044158 649 REEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLN 728 (892)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 728 (892)
+++|+.|++++|++++..|..+..+++|++|+
T Consensus 346 ------------------------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 377 (455)
T 3v47_A 346 ------------------------------------------------LDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377 (455)
T ss_dssp ------------------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred ------------------------------------------------cccCCEEECCCCcccccChhhccccccccEEE
Confidence 34699999999999999999999999999999
Q ss_pred ccCccCCccccccccCCCCCCEEECCCCcCcccCCc
Q 044158 729 LSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPP 764 (892)
Q Consensus 729 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~ 764 (892)
|++|++++..+..++.+++|+.|++++|++++.+|.
T Consensus 378 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999988888889999999999999999998873
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=3.2e-39 Score=362.03 Aligned_cols=322 Identities=26% Similarity=0.365 Sum_probs=190.7
Q ss_pred CCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEE
Q 044158 355 TNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLD 434 (892)
Q Consensus 355 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 434 (892)
++|++|++++|.+++. +. ..++|++|++++|+++ .++.. .++|++|++++|.+++ +| .|+++++|++|+
T Consensus 91 ~~L~~L~l~~n~l~~l-p~---~~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 91 PHLESLVASCNSLTEL-PE---LPQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp TTCSEEECCSSCCSSC-CC---CCTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCcc-cc---ccCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 3455555555555542 11 1256666666666666 33321 2577777777777775 55 477777777777
Q ss_pred CcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCC
Q 044158 435 LSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDIS 514 (892)
Q Consensus 435 L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 514 (892)
+++|+++ .+|.. ..+|++|++++|++++ +| .+..+++|+.|++++|++.+ +|... ++|++|++++|+++
T Consensus 160 l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~ 228 (454)
T 1jl5_A 160 VDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILE 228 (454)
T ss_dssp CCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCS
T ss_pred CCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCC
Confidence 7777777 45542 3477777777777776 34 46777777777777777765 34322 47778888888777
Q ss_pred CCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhh
Q 044158 515 GSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWM 594 (892)
Q Consensus 515 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~ 594 (892)
.+| .++.+++|+.|++++|++++ +|.. .++|++|++++|+++++ |.. +++|++|++++|++++. |..
T Consensus 229 -~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l--~~~---~~~L~~L~ls~N~l~~l-~~~- 295 (454)
T 1jl5_A 229 -ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDL--PEL---PQSLTFLDVSENIFSGL-SEL- 295 (454)
T ss_dssp -SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCC--CCC---CTTCCEEECCSSCCSEE-SCC-
T ss_pred -ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccccc--Ccc---cCcCCEEECcCCccCcc-cCc-
Confidence 455 37777778888888777774 3432 36788888888887763 322 36788888888887752 211
Q ss_pred hcCCCCCEEecccccccccCCccccCC-CCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCC
Q 044158 595 GRLSQLRYLILANNNFEGEVPLRLCQL-QKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGP 673 (892)
Q Consensus 595 ~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (892)
.++|++|++++|++++ ++ .+ ++|++|++++|++++ +|..+
T Consensus 296 --~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~~------------------------------- 336 (454)
T 1jl5_A 296 --PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPALP------------------------------- 336 (454)
T ss_dssp --CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCCC-------------------------------
T ss_pred --CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-ccccC-------------------------------
Confidence 1578888888888774 22 22 478888888888774 44321
Q ss_pred CCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCc--cccccccCCCCCCEE
Q 044158 674 SMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTG--TIPVTFSNLRQVESL 751 (892)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L 751 (892)
++|+.|++++|+++ .+|. .+++|++|++++|++++ .+|.+++.
T Consensus 337 ------------------------~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~------- 381 (454)
T 1jl5_A 337 ------------------------PRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED------- 381 (454)
T ss_dssp ------------------------TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-------
T ss_pred ------------------------CcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh-------
Confidence 24777888888887 4665 46778888888888887 66665543
Q ss_pred ECCCCcCcccCCccccCCCCCCEEEccCCcccc--cCCcc
Q 044158 752 DLSYNNLTGKIPPRLVELNALAVFTVAHNNLSG--KIPER 789 (892)
Q Consensus 752 dLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g--~ip~~ 789 (892)
++.|.+.|.+|.. +++|++||+++|+++| .+|..
T Consensus 382 -L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s 417 (454)
T 1jl5_A 382 -LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES 417 (454)
T ss_dssp -EECCC----------------------------------
T ss_pred -hhhcccccccccc---cCcCCEEECCCCcCCccccchhh
Confidence 2346677777763 4678888888888887 67753
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.3e-37 Score=344.70 Aligned_cols=384 Identities=23% Similarity=0.269 Sum_probs=227.0
Q ss_pred ceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCC-------------CCEEEccCCcCcCCC
Q 044158 305 QLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTN-------------LRSIILANNSLSGPF 371 (892)
Q Consensus 305 ~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~-------------L~~L~L~~n~l~~~~ 371 (892)
.++.+.++++.+ +.+|+.++.+++|++|++++|.+.|.+|.. ++++++ +++|++++|.+++..
T Consensus 12 ~L~~L~l~~n~l---~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp 87 (454)
T 1jl5_A 12 FLQEPLRHSSNL---TEMPVEAENVKSKTEYYNAWSEWERNAPPG-NGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTT-SCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred cchhhhcccCch---hhCChhHhcccchhhhhccCCcccccCCcc-cccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence 455555555553 457777788888888888888888888776 444443 477888887777643
Q ss_pred CCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhc
Q 044158 372 RLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMG 451 (892)
Q Consensus 372 ~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~ 451 (892)
. ..++|++|++++|.+++ +|.. +++|++|++++|++++ +|.. .++|++|++++|+++ .+|. +..
T Consensus 88 ~----~~~~L~~L~l~~n~l~~-lp~~----~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~-~lp~--~~~ 151 (454)
T 1jl5_A 88 E----LPPHLESLVASCNSLTE-LPEL----PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE-KLPE--LQN 151 (454)
T ss_dssp S----CCTTCSEEECCSSCCSS-CCCC----CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS-SCCC--CTT
T ss_pred C----CcCCCCEEEccCCcCCc-cccc----cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC-CCcc--cCC
Confidence 2 23677788888777774 6532 4677788887777764 2221 157777888877777 4663 456
Q ss_pred CccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEE
Q 044158 452 CFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAII 531 (892)
Q Consensus 452 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 531 (892)
+++|++|++++|++++ +|.. .++|++|++++|++.+ +| .+.++++|++|++++|++++ +|.. .++|+.|+
T Consensus 152 l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ 221 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIV 221 (454)
T ss_dssp CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEE
T ss_pred CCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEE
Confidence 7777888887777775 3332 2477777777777775 45 47777777777777777775 3332 24777777
Q ss_pred CCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccc
Q 044158 532 MPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE 611 (892)
Q Consensus 532 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 611 (892)
+++|.++ .+| .++.+++|++|++++|+++++ |. .+++|++|++++|++++ +|.. .++|++|++++|+++
T Consensus 222 l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l--~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~ 290 (454)
T 1jl5_A 222 AGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL--PD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFS 290 (454)
T ss_dssp CCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC--CS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS
T ss_pred CcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc--cc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccC
Confidence 7777777 455 377777777777777777753 22 23677777777777775 4443 367777777777777
Q ss_pred ccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccc
Q 044158 612 GEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYT 691 (892)
Q Consensus 612 ~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (892)
+. |.. .++|++|++++|++++ ++.
T Consensus 291 ~l-~~~---~~~L~~L~l~~N~l~~-i~~--------------------------------------------------- 314 (454)
T 1jl5_A 291 GL-SEL---PPNLYYLNASSNEIRS-LCD--------------------------------------------------- 314 (454)
T ss_dssp EE-SCC---CTTCCEEECCSSCCSE-ECC---------------------------------------------------
T ss_pred cc-cCc---CCcCCEEECcCCcCCc-ccC---------------------------------------------------
Confidence 52 211 2567777777777763 110
Q ss_pred cCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcc--cCCccccCC
Q 044158 692 YKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG--KIPPRLVEL 769 (892)
Q Consensus 692 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g--~ip~~l~~l 769 (892)
..++|+.|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|+.||+++|++++ .+|..+..
T Consensus 315 ----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~- 381 (454)
T 1jl5_A 315 ----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED- 381 (454)
T ss_dssp ----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-
T ss_pred ----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh-
Confidence 01257778888888885 5654 467888888888888 4555 46788888888888887 66765432
Q ss_pred CCCCEEEccCCcccccCCccccccCCCCcccccCCCCCC
Q 044158 770 NALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLC 808 (892)
Q Consensus 770 ~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc 808 (892)
++.|++.|.+|.. +..+...++++|+...
T Consensus 382 -------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 382 -------LRMNSHLAEVPEL---PQNLKQLHVETNPLRE 410 (454)
T ss_dssp -------EECCC---------------------------
T ss_pred -------hhhcccccccccc---cCcCCEEECCCCcCCc
Confidence 3457777877763 3566677788887654
No 29
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.3e-35 Score=336.44 Aligned_cols=347 Identities=24% Similarity=0.354 Sum_probs=288.5
Q ss_pred cCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcE
Q 044158 353 NNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIY 432 (892)
Q Consensus 353 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 432 (892)
.++++++|++.++.+.... .+..+++|++|++++|.++ .++. + ..+++|++|++++|.+.+..+ ++++++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLT-DITP-L-KNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred HhccccEEecCCCCCccCc--chhhhcCCCEEECCCCccC-Cchh-h-hccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 4567888888888887532 3677889999999999888 4444 3 448999999999999986554 889999999
Q ss_pred EECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCc
Q 044158 433 LDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDND 512 (892)
Q Consensus 433 L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 512 (892)
|++++|.++ .++. +..+++|++|++++|.+.+. ..+..+++|+.|+++ |.+.+.. .+.++++|++|++++|.
T Consensus 117 L~L~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQIT-DIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred EECCCCCCC-CChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence 999999988 5554 46789999999999998864 247889999999996 4555432 38889999999999999
Q ss_pred CCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCCh
Q 044158 513 ISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPN 592 (892)
Q Consensus 513 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~ 592 (892)
+++. ..+..+++|+.|++++|.+++..| ++.+++|++|++++|+++++ +.+..+++|++|++++|.+++..|
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~- 260 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAP- 260 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc---hhhhcCCCCCEEECCCCccccchh-
Confidence 8864 348889999999999999987655 77789999999999999874 368889999999999999987655
Q ss_pred hhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCC
Q 044158 593 WMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVG 672 (892)
Q Consensus 593 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (892)
+..+++|++|++++|++++..+ +..+++|+.|++++|++++..| +.
T Consensus 261 -~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~----------------------------- 306 (466)
T 1o6v_A 261 -LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--IS----------------------------- 306 (466)
T ss_dssp -GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GG-----------------------------
T ss_pred -hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hc-----------------------------
Confidence 8889999999999999986544 8889999999999999885322 11
Q ss_pred CCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEE
Q 044158 673 PSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLD 752 (892)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~Ld 752 (892)
.+++|+.|++++|++++..| ++.+++|+.|++++|.+++. ..++++++|+.|+
T Consensus 307 -----------------------~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 359 (466)
T 1o6v_A 307 -----------------------NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS 359 (466)
T ss_dssp -----------------------GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred -----------------------CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence 23469999999999998766 78999999999999999976 4789999999999
Q ss_pred CCCCcCcccCCccccCCCCCCEEEccCCccccc
Q 044158 753 LSYNNLTGKIPPRLVELNALAVFTVAHNNLSGK 785 (892)
Q Consensus 753 Ls~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ 785 (892)
+++|++++.+| +..+++|+.|++++|++++.
T Consensus 360 l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 99999998887 88999999999999999974
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.4e-36 Score=344.16 Aligned_cols=346 Identities=21% Similarity=0.236 Sum_probs=195.7
Q ss_pred cEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEcc
Q 044158 382 IALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS 461 (892)
Q Consensus 382 ~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~ 461 (892)
+.++.+++.++ .+|..+ .++++.|++++|++++..+..|.++++|++|+|++|.+++ ++...+.++++|++|+++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L~ 88 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGLR 88 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE-eChhhhhCCccCCEEECC
Confidence 46667777666 666544 3567777777777776666666666777777776666663 322233455555555555
Q ss_pred CCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCC
Q 044158 462 NNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPI 541 (892)
Q Consensus 462 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 541 (892)
+|++++..+..|.++++|++|++++|++.+..+..|..+++|++|++++|.+++. .
T Consensus 89 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------~ 144 (477)
T 2id5_A 89 SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI------------------------S 144 (477)
T ss_dssp SSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE------------------------C
T ss_pred CCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCcccee------------------------C
Confidence 5555554444455555555555555555544444555555555555555555444 4
Q ss_pred cccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCC
Q 044158 542 PSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQL 621 (892)
Q Consensus 542 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 621 (892)
+..|..+++|++|++++|+++++ .+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+.+|......
T Consensus 145 ~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 223 (477)
T 2id5_A 145 HRAFSGLNSLEQLTLEKCNLTSI-PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223 (477)
T ss_dssp TTSSTTCTTCCEEEEESCCCSSC-CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT
T ss_pred hhhccCCCCCCEEECCCCcCccc-ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC
Confidence 44444555555555555555442 13344555555555555555554444455555555555555555554555444444
Q ss_pred CCCCEEEcCCCcCCCCCCc-cccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCcc
Q 044158 622 QKLRLLDLSHNNFSGQIPP-CLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESI 700 (892)
Q Consensus 622 ~~L~~L~Ls~N~l~g~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 700 (892)
.+|+.|++++|+++ .+|. .+. .+++|
T Consensus 224 ~~L~~L~l~~n~l~-~~~~~~~~----------------------------------------------------~l~~L 250 (477)
T 2id5_A 224 LNLTSLSITHCNLT-AVPYLAVR----------------------------------------------------HLVYL 250 (477)
T ss_dssp CCCSEEEEESSCCC-SCCHHHHT----------------------------------------------------TCTTC
T ss_pred ccccEEECcCCccc-ccCHHHhc----------------------------------------------------Ccccc
Confidence 55666666666555 2221 111 12245
Q ss_pred ceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCC
Q 044158 701 HGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHN 780 (892)
Q Consensus 701 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N 780 (892)
+.|++++|.+++..+..|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred CeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 56666666666555556666677777777777777666667777777777777777777665566666677777777777
Q ss_pred cccccCCccccccCCCCcccccCCCCCCCCC
Q 044158 781 NLSGKIPERIAQFATFDEDSYEGNPFLCGPP 811 (892)
Q Consensus 781 ~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~ 811 (892)
++++..+. ...+.......+.++...|..|
T Consensus 331 ~l~c~c~~-~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 331 PLACDCRL-LWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp CEECSGGG-HHHHTTTTSSCCTTCCCBEEES
T ss_pred CccCccch-HhHHhhhhccccCccCceeCCc
Confidence 77665442 1112222334455666666543
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=5.3e-36 Score=336.12 Aligned_cols=358 Identities=19% Similarity=0.140 Sum_probs=240.3
Q ss_pred ccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcC
Q 044158 324 KFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL 403 (892)
Q Consensus 324 ~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l 403 (892)
..+..+++|++|++++|.+.+. |. ++.+++|++|++++|.+++. ++..+++|++|++++|.+++ ++ + ..+
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~~~-~~--l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--~-~~l 105 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSITDM-TG--IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--V-TPL 105 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCCCC-TT--GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--C-TTC
T ss_pred cChhHcCCCCEEEccCCCcccC-hh--hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--c-CCC
Confidence 3455566777777777766653 42 56667777777777776653 25666667777777776663 33 2 236
Q ss_pred CCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEe
Q 044158 404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLN 483 (892)
Q Consensus 404 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 483 (892)
++|++|++++|++++. | ++.+++|++|++++|++++ ++ +..+++|++|++++|...+.+ .+..+++|+.|+
T Consensus 106 ~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp TTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 6677777777766653 3 6666667777777766663 33 245666666666666444433 355666666666
Q ss_pred ecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCC
Q 044158 484 LDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 563 (892)
Q Consensus 484 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 563 (892)
+++|++++ +| +..+++|++|++++|++++. .++.+++|+.|++++|++++ +| +..+++|++|++++|++++
T Consensus 177 ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 177 CSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred CCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence 66666665 23 55666666666666666654 25566666666666666665 33 5566666666666666665
Q ss_pred CcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCcccc
Q 044158 564 RPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLD 643 (892)
Q Consensus 564 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~ 643 (892)
.+ +..+++|+.|++++| +|+.|++++|++.+.+| ++.+++|+.|++++|+..|.+|....
T Consensus 248 ~~----~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~ 307 (457)
T 3bz5_A 248 LD----VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAA 307 (457)
T ss_dssp CC----CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTC
T ss_pred cC----HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCC
Confidence 32 334556666665554 46778888888887776 46789999999999998888875433
Q ss_pred CCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCC
Q 044158 644 NTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIR 723 (892)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 723 (892)
.+... .....++|+.|++++|++++. | ++.+++
T Consensus 308 ~L~~L--------------------------------------------~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~ 340 (457)
T 3bz5_A 308 GITEL--------------------------------------------DLSQNPKLVYLYLNNTELTEL-D--VSHNTK 340 (457)
T ss_dssp CCSCC--------------------------------------------CCTTCTTCCEEECTTCCCSCC-C--CTTCTT
T ss_pred cceEe--------------------------------------------chhhcccCCEEECCCCccccc-c--cccCCc
Confidence 22200 001235789999999999984 3 899999
Q ss_pred CCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCcc
Q 044158 724 IHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPER 789 (892)
Q Consensus 724 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 789 (892)
|+.|++++|++++ ++.|+.|++++|+++|. ..+..|..+++++|+++|.||..
T Consensus 341 L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 341 LKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp CSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred CcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 9999999999986 24677788999999987 24456888999999999999974
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.5e-36 Score=341.89 Aligned_cols=325 Identities=19% Similarity=0.197 Sum_probs=284.7
Q ss_pred cEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccC
Q 044158 431 IYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISD 510 (892)
Q Consensus 431 ~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 510 (892)
+.++.++++++ .+|..+ .++++.|++++|++++..+..|..+++|++|+|++|.+.+..|..|.++++|++|+|++
T Consensus 14 ~~v~c~~~~l~-~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCS-SCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-cCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 45666666666 666644 35778888888888887778888888999999999988887788899999999999999
Q ss_pred CcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccC
Q 044158 511 NDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNI 590 (892)
Q Consensus 511 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 590 (892)
|++++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++ ..+..|.++++|++|++++|++++..
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~ 168 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY-ISHRAFSGLNSLEQLTLEKCNLTSIP 168 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE-ECTTSSTTCTTCCEEEEESCCCSSCC
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccce-eChhhccCCCCCCEEECCCCcCcccC
Confidence 99987777778899999999999999998888899999999999999999987 44678999999999999999999777
Q ss_pred ChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccccccccccccccccc
Q 044158 591 PNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYN 670 (892)
Q Consensus 591 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (892)
+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.+.+|.....
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-------------------------- 222 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY-------------------------- 222 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT--------------------------
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc--------------------------
Confidence 778999999999999999999888889999999999999999987766653321
Q ss_pred CCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCE
Q 044158 671 VGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVES 750 (892)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 750 (892)
..+|+.|++++|++++..+..+..+++|+.|+|++|.+++..+..|.++++|+.
T Consensus 223 --------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (477)
T 2id5_A 223 --------------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQE 276 (477)
T ss_dssp --------------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCE
T ss_pred --------------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCE
Confidence 125899999999999655567999999999999999999988899999999999
Q ss_pred EECCCCcCcccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcccccCCCCCCCCCC
Q 044158 751 LDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPL 812 (892)
Q Consensus 751 LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l 812 (892)
|+|++|++++..|..+..+++|+.|++++|++++..+..+..+..+....+.+||+.|+|.+
T Consensus 277 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 277 IQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp EECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred EECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 99999999999999999999999999999999987777667778888999999999998753
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.6e-34 Score=327.28 Aligned_cols=349 Identities=26% Similarity=0.369 Sum_probs=287.2
Q ss_pred CCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcE
Q 044158 329 QHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGF 408 (892)
Q Consensus 329 ~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~ 408 (892)
+++++.|++.++.+.. +|. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++ ++. + ..+++|++
T Consensus 45 l~~l~~L~l~~~~i~~-l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~-~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-IDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIAD-ITP-L-ANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCCC-CTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-G-TTCTTCCE
T ss_pred hccccEEecCCCCCcc-Ccc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCcccc-Chh-h-cCCCCCCE
Confidence 4567777777776653 554 5678899999999998887654 7888999999999999884 443 3 44899999
Q ss_pred EECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCcc
Q 044158 409 LTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNH 488 (892)
Q Consensus 409 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 488 (892)
|++++|.+++..+ +..+++|++|++++|.+. .++. +..+++|++|+++ |.+.+.. .+..+++|+.|++++|.
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTIS-DISA--LSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNK 188 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEEC-CCGG--GTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSC
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccC-CChh--hccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCc
Confidence 9999999886543 889999999999999988 5554 4678999999996 4555433 37889999999999999
Q ss_pred CcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccc
Q 044158 489 FIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNG 568 (892)
Q Consensus 489 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 568 (892)
+.+. ..+..+++|++|++++|++.+..| ++.+++|+.|++++|.+++. ..+..+++|++|++++|.+++..
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~--- 259 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLA--- 259 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG---
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccch---
Confidence 8754 358889999999999999987765 77889999999999999864 46888999999999999998743
Q ss_pred cccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccc
Q 044158 569 AFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLH 648 (892)
Q Consensus 569 ~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~ 648 (892)
.+..+++|++|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|++++..| +.
T Consensus 260 ~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~----- 328 (466)
T 1o6v_A 260 PLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VS----- 328 (466)
T ss_dssp GGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GG-----
T ss_pred hhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hc-----
Confidence 38899999999999999986544 8889999999999999986544 7899999999999999986543 21
Q ss_pred ccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEE
Q 044158 649 REEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLN 728 (892)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 728 (892)
.+++|+.|++++|.+++. ..+..+++|+.|+
T Consensus 329 -----------------------------------------------~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 359 (466)
T 1o6v_A 329 -----------------------------------------------SLTKLQRLFFYNNKVSDV--SSLANLTNINWLS 359 (466)
T ss_dssp -----------------------------------------------GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred -----------------------------------------------cCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence 234699999999999975 4789999999999
Q ss_pred ccCccCCccccccccCCCCCCEEECCCCcCcccCCcc
Q 044158 729 LSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPR 765 (892)
Q Consensus 729 Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~ 765 (892)
+++|++++.+| +..+++|+.|++++|++++ +|..
T Consensus 360 l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~-~p~~ 393 (466)
T 1o6v_A 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTN-APVN 393 (466)
T ss_dssp CCSSCCCBCGG--GTTCTTCCEEECCCEEEEC-CCBC
T ss_pred CCCCccCccch--hhcCCCCCEEeccCCcccC-Cchh
Confidence 99999999888 8999999999999999996 3443
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=7.6e-35 Score=326.76 Aligned_cols=317 Identities=21% Similarity=0.194 Sum_probs=179.2
Q ss_pred cccCCCCCcEEEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCccccCCCCchhhcCCC
Q 044158 198 GLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQIPMSLEPFFNYS 277 (892)
Q Consensus 198 ~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~l~ 277 (892)
.++.+++|++|++++|.+++. | .++.+++|++|++++|++++ + .++.+++|++|++++|.+++.
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~---~~~~l~~L~~L~Ls~N~l~~~---------- 100 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-L---DLSQNTNLTYLACDSNKLTNL---------- 100 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSCC----------
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-E---ccccCCCCCEEECcCCCCcee----------
Confidence 455566666666666666653 3 46666666666666666654 2 255556666666665554421
Q ss_pred CccEEEccCccccccccccccCCCCCcceeEEEcCCCCCCCCCCCCccccCCCCccEEEccCCcCccccchhhhhcCCCC
Q 044158 278 KLKIFHGRENQIFGEIESSHSSLTPKFQLTSISLSDHGDSDGGTIPKFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNL 357 (892)
Q Consensus 278 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L 357 (892)
+ +..+++|++|++++|.+.+ +| ++.+++|
T Consensus 101 ---------------------------------------------~--~~~l~~L~~L~L~~N~l~~-l~---~~~l~~L 129 (457)
T 3bz5_A 101 ---------------------------------------------D--VTPLTKLTYLNCDTNKLTK-LD---VSQNPLL 129 (457)
T ss_dssp ---------------------------------------------C--CTTCTTCCEEECCSSCCSC-CC---CTTCTTC
T ss_pred ---------------------------------------------e--cCCCCcCCEEECCCCcCCe-ec---CCCCCcC
Confidence 1 2234455566666665554 33 4556666
Q ss_pred CEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcC
Q 044158 358 RSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSN 437 (892)
Q Consensus 358 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 437 (892)
++|++++|.+++. .+..+++|++|++++|...+.++ + ..+++|++|++++|++++ +| +..+++|+.|++++
T Consensus 130 ~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~--~-~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 130 TYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD--V-TPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDT 200 (457)
T ss_dssp CEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC--C-TTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCS
T ss_pred CEEECCCCcccee---ccccCCcCCEEECCCCCcccccc--c-ccCCcCCEEECCCCccce-ec--cccCCCCCEEECcC
Confidence 6666666666652 35556666666666664443442 2 225566666666666654 23 55556666666666
Q ss_pred CcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCc
Q 044158 438 NQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSI 517 (892)
Q Consensus 438 n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 517 (892)
|++++ ++ +..+++|++|++++|++++ +| +..+++|+.|++++|++++.. +..+++|+.|++++|
T Consensus 201 N~l~~-~~---l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n------ 264 (457)
T 3bz5_A 201 NNITK-LD---LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT------ 264 (457)
T ss_dssp SCCSC-CC---CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC------
T ss_pred CcCCe-ec---cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC------
Confidence 66552 22 2345556666666666555 22 455555666666666555432 234455555555443
Q ss_pred cccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcC
Q 044158 518 PTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRL 597 (892)
Q Consensus 518 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l 597 (892)
+|+.|++++|.+.+.+| ++.+++|+.|++++|...+ .+|. ..++|+.|++++|
T Consensus 265 --------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~-~l~~---~~~~L~~L~l~~~------------- 317 (457)
T 3bz5_A 265 --------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY-LLDC---QAAGITELDLSQN------------- 317 (457)
T ss_dssp --------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC-EEEC---TTCCCSCCCCTTC-------------
T ss_pred --------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccc-eecc---CCCcceEechhhc-------------
Confidence 23445566666555554 3455666666666666554 3332 2344444444433
Q ss_pred CCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCC
Q 044158 598 SQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSG 636 (892)
Q Consensus 598 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g 636 (892)
++|++|++++|++++. + +..+++|+.|++++|+++|
T Consensus 318 ~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 318 PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 5777778888877763 2 6777778888888777764
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.5e-34 Score=318.17 Aligned_cols=335 Identities=20% Similarity=0.216 Sum_probs=214.5
Q ss_pred CCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcE
Q 044158 378 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 457 (892)
Q Consensus 378 ~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~ 457 (892)
+++++.|++++|.++ .+|..++..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .++...+.++++|++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 121 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCE
Confidence 456777777777766 677766666788888888888887766667777888888888888777 444444456777777
Q ss_pred EEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcc
Q 044158 458 LLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHL 537 (892)
Q Consensus 458 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 537 (892)
|++++|+++...+..|..+++|++|++++|++.+..+..+..+++|++|++++|++++. .+..+++|+.|++++|.+
T Consensus 122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCC
T ss_pred EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccc
Confidence 77777777755555556677777777777777666666666777777777777766643 234455566666666655
Q ss_pred cCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcc
Q 044158 538 EGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLR 617 (892)
Q Consensus 538 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 617 (892)
++ +...++|++|++++|.++.++ . ...++|+.|++++|++++. .++..+++|++|++++|++++..|..
T Consensus 199 ~~-----~~~~~~L~~L~l~~n~l~~~~--~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 199 ST-----LAIPIAVEELDASHNSINVVR--G--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp SE-----EECCSSCSEEECCSSCCCEEE--C--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cc-----cCCCCcceEEECCCCeeeecc--c--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 42 222345566666666555421 1 1234555555555555532 34555555555555555555544555
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCc
Q 044158 618 LCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPL 697 (892)
Q Consensus 618 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 697 (892)
+..+++|++|++++|+
T Consensus 268 ~~~l~~L~~L~L~~n~---------------------------------------------------------------- 283 (390)
T 3o6n_A 268 FVKMQRLERLYISNNR---------------------------------------------------------------- 283 (390)
T ss_dssp GTTCSSCCEEECCSSC----------------------------------------------------------------
T ss_pred ccccccCCEEECCCCc----------------------------------------------------------------
Confidence 5555555555555554
Q ss_pred CccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEc
Q 044158 698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTV 777 (892)
Q Consensus 698 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~l 777 (892)
+++ +|..+..+++|++|+|++|+++ .+|..++.+++|+.|++++|++++. | +..+++|+.|++
T Consensus 284 ------------l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l 346 (390)
T 3o6n_A 284 ------------LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 346 (390)
T ss_dssp ------------CCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred ------------Ccc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEc
Confidence 442 3444556677777777777777 4566677778888888888888743 3 567778888888
Q ss_pred cCCcccccCCccccccCCCCcccccCCCCCCCCC
Q 044158 778 AHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPP 811 (892)
Q Consensus 778 s~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~ 811 (892)
++|++++.... ..+..+....+.+++..|.++
T Consensus 347 ~~N~~~~~~~~--~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 347 SHNDWDCNSLR--ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp CSSCEEHHHHH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred CCCCccchhHH--HHHHHHHhhcccccCceeccc
Confidence 88888875332 445566666778888888754
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.2e-35 Score=315.02 Aligned_cols=258 Identities=29% Similarity=0.536 Sum_probs=209.5
Q ss_pred CCcEEEccCCcCCC--CccccccCCCCCcEEECCC-CcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccE
Q 044158 502 SLQGLYISDNDISG--SIPTWMGNISFLDAIIMPD-NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLT 578 (892)
Q Consensus 502 ~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~ 578 (892)
+++.|++++|.+++ .+|..+..++.|++|++++ |.+.+.+|..|.++++|++|++++|++++ .+|..+..+++|++
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE-ECCGGGGGCTTCCE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC-cCCHHHhCCCCCCE
Confidence 45555555555555 5555556666666666663 66666666667777777777777777765 55667777788888
Q ss_pred EEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCC-CCCEEEcCCCcCCCCCCccccCCcccccccccccc
Q 044158 579 LDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQ-KLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLI 657 (892)
Q Consensus 579 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~ 657 (892)
|++++|++++.+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|+++|.+|..+...
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l------------ 197 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL------------ 197 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC------------
Confidence 88888888777888888888888888888888888888888887 88888888888887777665432
Q ss_pred cccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCcc
Q 044158 658 PTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGT 737 (892)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 737 (892)
.|+.|++++|.+++.+|..++.+++|+.|+|++|++++.
T Consensus 198 -----------------------------------------~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 198 -----------------------------------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp -----------------------------------------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred -----------------------------------------cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 177899999999988999999999999999999999988
Q ss_pred ccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcccccCCCCCCCCCCCCCC
Q 044158 738 IPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPLPKIC 816 (892)
Q Consensus 738 ~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l~~~c 816 (892)
+|. +..+++|++|||++|+++|.+|..+..+++|++|++++|+++|.+|. ..++..+...++.|||++||.|+. .|
T Consensus 237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~-~~~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC-CccccccChHHhcCCCCccCCCCC-CC
Confidence 776 88999999999999999999999999999999999999999999999 488899999999999999998865 46
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.6e-34 Score=332.20 Aligned_cols=335 Identities=20% Similarity=0.218 Sum_probs=209.9
Q ss_pred CCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcE
Q 044158 378 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 457 (892)
Q Consensus 378 ~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~ 457 (892)
+.+++.+++++|.+. .+|..++..+++|++|++++|.+.+..|..|+.+++|++|+|++|.++ .+|...+.++++|++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence 345667777777666 566666666777777777777777766667777777777777777776 444444456666777
Q ss_pred EEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcc
Q 044158 458 LLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHL 537 (892)
Q Consensus 458 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 537 (892)
|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+++.. +..+++|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 777777666555555566666666666666666665666666666666666666665432 33344555555555554
Q ss_pred cCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcc
Q 044158 538 EGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLR 617 (892)
Q Consensus 538 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 617 (892)
++ +...++|+.|++++|.++.++ ..+ .++|+.|++++|.+++ +.++..+++|+.|+|++|.+++..|..
T Consensus 205 ~~-----l~~~~~L~~L~ls~n~l~~~~--~~~--~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 205 ST-----LAIPIAVEELDASHNSINVVR--GPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp SE-----EECCTTCSEEECCSSCCCEEE--CSC--CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred cc-----ccCCchhheeeccCCcccccc--ccc--CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHH
Confidence 42 222334555555555554321 111 1344455555554443 234444444444444444444444444
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCc
Q 044158 618 LCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPL 697 (892)
Q Consensus 618 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 697 (892)
+..+++
T Consensus 274 ~~~l~~-------------------------------------------------------------------------- 279 (597)
T 3oja_B 274 FVKMQR-------------------------------------------------------------------------- 279 (597)
T ss_dssp GTTCSS--------------------------------------------------------------------------
T ss_pred hcCccC--------------------------------------------------------------------------
Confidence 444444
Q ss_pred CccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEc
Q 044158 698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTV 777 (892)
Q Consensus 698 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~l 777 (892)
|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..++.+++|+.|+|++|++++. | +..++.|+.|++
T Consensus 280 --L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l 352 (597)
T 3oja_B 280 --LERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTL 352 (597)
T ss_dssp --CCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEEC
T ss_pred --CCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEe
Confidence 4555555555553 4555566777888888888888 5677778888888888888888854 3 567788999999
Q ss_pred cCCcccccCCccccccCCCCcccccCCCCCCCCC
Q 044158 778 AHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPP 811 (892)
Q Consensus 778 s~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~ 811 (892)
++|+++|..+. ..+..+....+.+++..|+.+
T Consensus 353 ~~N~~~~~~~~--~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 353 SHNDWDCNSLR--ALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp CSSCEEHHHHH--HHTTTCCTTTBCCCCCCCCTT
T ss_pred eCCCCCChhHH--HHHHHHhhhccccccccCCcc
Confidence 99999886543 456677777788999999864
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.6e-33 Score=306.84 Aligned_cols=312 Identities=20% Similarity=0.212 Sum_probs=247.7
Q ss_pred CCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEE
Q 044158 427 MNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGL 506 (892)
Q Consensus 427 l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 506 (892)
+++++.|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|++.+..|..|.++++|++|
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 456677777777766 6666666667777777777777776666677777888888888888777777777888888888
Q ss_pred EccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCcc
Q 044158 507 YISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRL 586 (892)
Q Consensus 507 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 586 (892)
++++|+++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++. .+..+++|+.|++++|.+
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~L~~L~l~~n~l 198 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV----DLSLIPSLFHANVSYNLL 198 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC----CGGGCTTCSEEECCSSCC
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc----ccccccccceeecccccc
Confidence 8888888765555567788888888888888877777788888888888888888763 255678888888888887
Q ss_pred CccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccccccccccccc
Q 044158 587 NGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDI 666 (892)
Q Consensus 587 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (892)
++. ...++|+.|++++|++... |.. ..++|+.|++++|++++. ..+.
T Consensus 199 ~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~----------------------- 245 (390)
T 3o6n_A 199 STL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLL----------------------- 245 (390)
T ss_dssp SEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGG-----------------------
T ss_pred ccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHc-----------------------
Confidence 743 2346889999999988854 432 357899999999998742 1221
Q ss_pred ccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCC
Q 044158 667 VSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLR 746 (892)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 746 (892)
.+++|+.|++++|.+++..|..+..+++|+.|+|++|++++ +|..+..++
T Consensus 246 -----------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~ 295 (390)
T 3o6n_A 246 -----------------------------NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 295 (390)
T ss_dssp -----------------------------GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCT
T ss_pred -----------------------------CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCC
Confidence 23468999999999999899999999999999999999995 577778999
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcccccCCCCCCCC
Q 044158 747 QVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGP 810 (892)
Q Consensus 747 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~ 810 (892)
+|+.|++++|+++ .+|..+..+++|+.|++++|++++. | ...+..+...++.+||+-|.+
T Consensus 296 ~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 296 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred CCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchh
Confidence 9999999999999 6788889999999999999999865 3 456778888999999999865
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.6e-32 Score=294.57 Aligned_cols=304 Identities=22% Similarity=0.327 Sum_probs=189.2
Q ss_pred CCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEE
Q 044158 403 LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRL 482 (892)
Q Consensus 403 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 482 (892)
+++|++|++++|.+.. ++ .+..+++|++|++++|+++ .++. +..+++|++|++++|.++.. +.+..+++|++|
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L 115 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLREL 115 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEE
Confidence 3444444444444432 22 2444445555555555444 3333 23445555555555544432 234555555555
Q ss_pred eecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccC
Q 044158 483 NLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA 562 (892)
Q Consensus 483 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 562 (892)
++++|.+.+. +. +..+++|++|++++|.....++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 116 ~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 116 YLNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp ECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred ECcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 5555555533 22 5555666666666664443332 25566666666666666654332 666677777777777776
Q ss_pred CCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccc
Q 044158 563 GRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCL 642 (892)
Q Consensus 563 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~ 642 (892)
+++ .+..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|++|++++|++++ ++ .+
T Consensus 191 ~~~---~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~ 261 (347)
T 4fmz_A 191 DIS---PLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD-IN-AV 261 (347)
T ss_dssp CCG---GGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GG
T ss_pred ccc---cccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC-Ch-hH
Confidence 532 26667777777777777765433 6677777777777777774333 6777778888888777763 11 11
Q ss_pred cCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccC
Q 044158 643 DNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELI 722 (892)
Q Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 722 (892)
. .+++|+.|++++|.+++. +.+..++
T Consensus 262 ~----------------------------------------------------~l~~L~~L~l~~n~l~~~--~~~~~l~ 287 (347)
T 4fmz_A 262 K----------------------------------------------------DLTKLKMLNVGSNQISDI--SVLNNLS 287 (347)
T ss_dssp T----------------------------------------------------TCTTCCEEECCSSCCCCC--GGGGGCT
T ss_pred h----------------------------------------------------cCCCcCEEEccCCccCCC--hhhcCCC
Confidence 1 234577788888888754 3578888
Q ss_pred CCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccc
Q 044158 723 RIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783 (892)
Q Consensus 723 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 783 (892)
+|+.|++++|++++..|..++.+++|+.|++++|++++..| +..+++|+.||+++|+++
T Consensus 288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 89999999999888888888888999999999999887666 778888999999988875
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=9.2e-33 Score=322.52 Aligned_cols=312 Identities=20% Similarity=0.216 Sum_probs=249.1
Q ss_pred CCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEE
Q 044158 427 MNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGL 506 (892)
Q Consensus 427 l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L 506 (892)
+++++.+++++|.+. .+|..++..+++|++|++++|.+++..+..|..+++|+.|+|++|.+.+..|..|+++++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 446667777777666 6666666667777777777777777767777778888888888888877777777888888888
Q ss_pred EccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCcc
Q 044158 507 YISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRL 586 (892)
Q Consensus 507 ~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l 586 (892)
++++|.+++..+..|+.+++|+.|++++|.+++..|..|..+++|++|++++|.+++.+ +..+++|+.|++++|.+
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCSEEECCSSCC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhhhhhcccCcc
Confidence 88888888666666778888888888888888777778888888888888888887632 45678888888888887
Q ss_pred CccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccccccccccccc
Q 044158 587 NGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDI 666 (892)
Q Consensus 587 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (892)
++. ...++|+.|++++|.+....+ .+ .++|+.|+|++|.+++. ..+.
T Consensus 205 ~~l-----~~~~~L~~L~ls~n~l~~~~~-~~--~~~L~~L~L~~n~l~~~--~~l~----------------------- 251 (597)
T 3oja_B 205 STL-----AIPIAVEELDASHNSINVVRG-PV--NVELTILKLQHNNLTDT--AWLL----------------------- 251 (597)
T ss_dssp SEE-----ECCTTCSEEECCSSCCCEEEC-SC--CSCCCEEECCSSCCCCC--GGGG-----------------------
T ss_pred ccc-----cCCchhheeeccCCccccccc-cc--CCCCCEEECCCCCCCCC--hhhc-----------------------
Confidence 743 334678899999998875433 22 36899999999998852 2222
Q ss_pred ccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCC
Q 044158 667 VSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLR 746 (892)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 746 (892)
.++.|+.|++++|.+++.+|..|+.+++|+.|+|++|++++ +|..++.++
T Consensus 252 -----------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~ 301 (597)
T 3oja_B 252 -----------------------------NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIP 301 (597)
T ss_dssp -----------------------------GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCT
T ss_pred -----------------------------cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCC
Confidence 23468999999999999999999999999999999999996 677888899
Q ss_pred CCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCccccccCCCCcccccCCCCCCCC
Q 044158 747 QVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIAQFATFDEDSYEGNPFLCGP 810 (892)
Q Consensus 747 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~ 810 (892)
+|+.|+|++|.++ .+|..+..+++|++|++++|++++.. ...+..+....+.+||+.|.+
T Consensus 302 ~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 302 TLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp TCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHH
T ss_pred CCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChh
Confidence 9999999999999 68888999999999999999998763 356677888899999999865
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.3e-32 Score=292.81 Aligned_cols=304 Identities=27% Similarity=0.384 Sum_probs=213.5
Q ss_pred CCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcE
Q 044158 378 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY 457 (892)
Q Consensus 378 ~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~ 457 (892)
+++|++|++++|.+. .++. + ..+++|++|++++|.+++..+ +..+++|++|++++|.++ .++. +..+++|++
T Consensus 43 l~~L~~L~l~~~~i~-~~~~-~-~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-SIQG-I-EYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKIT-DISA--LQNLTNLRE 114 (347)
T ss_dssp HTTCSEEECCSSCCC-CCTT-G-GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSE
T ss_pred cccccEEEEeCCccc-cchh-h-hhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCccc-CchH--HcCCCcCCE
Confidence 344445555554444 3332 2 225666666666666654322 666666666666666665 3432 345666666
Q ss_pred EEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcc
Q 044158 458 LLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHL 537 (892)
Q Consensus 458 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 537 (892)
|++++|.+++..+ +..+++|+.|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 115 L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l 189 (347)
T 4fmz_A 115 LYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQI 189 (347)
T ss_dssp EECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCC
T ss_pred EECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcc
Confidence 6666666665433 5667777777777775554433 36777777777777777765443 66777778888887777
Q ss_pred cCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcc
Q 044158 538 EGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLR 617 (892)
Q Consensus 538 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 617 (892)
.+..+ +..+++|+.|++++|.+++.. .+..+++|++|++++|++++..+ +..+++|++|++++|.+++. ..
T Consensus 190 ~~~~~--~~~l~~L~~L~l~~n~l~~~~---~~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 190 EDISP--LASLTSLHYFTAYVNQITDIT---PVANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp CCCGG--GGGCTTCCEEECCSSCCCCCG---GGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred ccccc--ccCCCccceeecccCCCCCCc---hhhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence 65433 777888888888888887632 27788888888888888875443 77888999999999988753 46
Q ss_pred ccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCc
Q 044158 618 LCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPL 697 (892)
Q Consensus 618 ~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 697 (892)
+..+++|++|++++|++++. | .+. .+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~-~-~~~----------------------------------------------------~l 286 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI-S-VLN----------------------------------------------------NL 286 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC-G-GGG----------------------------------------------------GC
T ss_pred HhcCCCcCEEEccCCccCCC-h-hhc----------------------------------------------------CC
Confidence 78889999999999988742 2 111 23
Q ss_pred CccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCc
Q 044158 698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT 759 (892)
Q Consensus 698 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 759 (892)
++|+.|++++|.+++..|..++.+++|+.|++++|++++..| ++.+++|+.||+++|.++
T Consensus 287 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 287 SQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 468899999999998888899999999999999999998777 889999999999999886
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.5e-33 Score=299.18 Aligned_cols=252 Identities=29% Similarity=0.505 Sum_probs=170.3
Q ss_pred CCcEEeecCccCcC--CCCcccccCCCCcEEEccC-CcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEE
Q 044158 478 KLKRLNLDGNHFIG--GIPESLSNCSSLQGLYISD-NDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL 554 (892)
Q Consensus 478 ~L~~L~L~~n~~~~--~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 554 (892)
+++.|++++|.+.+ .+|..+.++++|++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 44555555555554 4455555555555555553 55555555555555555555555555555555556666666666
Q ss_pred eCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCC-CCCEEecccccccccCCccccCCCCCCEEEcCCCc
Q 044158 555 DLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLS-QLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNN 633 (892)
Q Consensus 555 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 633 (892)
++++|.+++ .+|..+..+++|++|++++|++++.+|..+..++ +|++|++++|++++.+|..+..++ |++|++++|+
T Consensus 131 ~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 131 DFSYNALSG-TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp ECCSSEEES-CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred eCCCCccCC-cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 666666665 4455666666666666666666666666666666 677777777777766676666665 7777777777
Q ss_pred CCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCcccccc
Q 044158 634 FSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGE 713 (892)
Q Consensus 634 l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 713 (892)
+++.+|..+.. +++|+.|++++|.+++.
T Consensus 209 l~~~~~~~~~~----------------------------------------------------l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 209 LEGDASVLFGS----------------------------------------------------DKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp EEECCGGGCCT----------------------------------------------------TSCCSEEECCSSEECCB
T ss_pred ccCcCCHHHhc----------------------------------------------------CCCCCEEECCCCceeee
Confidence 76655544432 22567777777777766
Q ss_pred CCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCc-cccc
Q 044158 714 IPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNN-LSGK 785 (892)
Q Consensus 714 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~-l~g~ 785 (892)
+|. +..+++|++|+|++|++++.+|..++.+++|+.|||++|+++|.+|.. ..+++|+.+++++|+ +.|.
T Consensus 237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~ 307 (313)
T 1ogq_A 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS 307 (313)
T ss_dssp GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence 554 777888888888888888888888888889999999999999888876 788888899999887 6653
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=1.7e-34 Score=327.93 Aligned_cols=360 Identities=19% Similarity=0.186 Sum_probs=282.2
Q ss_pred CCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCc----cCchhccCCCCCcEEECcCCcCccccchhHhhcCc-
Q 044158 379 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNG----SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF- 453 (892)
Q Consensus 379 ~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~- 453 (892)
++|++|++++|++++.....++..+++|++|++++|.+.+ .++..+..+++|++|++++|.+.+..+..++..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5688899998888754444545668999999999999875 34667888899999999999988655666666666
Q ss_pred ---cCcEEEccCCcccc----cccccccccCCCcEEeecCccCcCCCCcccc-----cCCCCcEEEccCCcCCCC----c
Q 044158 454 ---NLEYLLLSNNSLQG----QLFSKKINLTKLKRLNLDGNHFIGGIPESLS-----NCSSLQGLYISDNDISGS----I 517 (892)
Q Consensus 454 ---~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~ 517 (892)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|++++. +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999999984 5578888999999999999998754443332 356899999999998864 3
Q ss_pred cccccCCCCCcEEECCCCcccCCCccccc-----CCCCCcEEeCCCCccCCCc---ccccccCCCCccEEEccCCccCcc
Q 044158 518 PTWMGNISFLDAIIMPDNHLEGPIPSEFC-----QLDYLEILDLSKNNIAGRP---LNGAFSKCSYLLTLDLCNNRLNGN 589 (892)
Q Consensus 518 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~~~---~~~~~~~~~~L~~L~L~~n~l~~~ 589 (892)
+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+++.. ++..+..+++|++|++++|++++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 56677789999999999998765554443 3668999999999998632 466778899999999999998754
Q ss_pred C-----ChhhhcCCCCCEEeccccccccc----CCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccccccc
Q 044158 590 I-----PNWMGRLSQLRYLILANNNFEGE----VPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTY 660 (892)
Q Consensus 590 ~-----p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~ 660 (892)
. +..+..+++|++|++++|.++.. ++..+..+++|++|++++|++++..+..+...-
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l-------------- 308 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETL-------------- 308 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHh--------------
Confidence 3 22333588999999999999864 567777899999999999988643222221100
Q ss_pred ccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCcccccc----CCccccccCCCCEEEccCccCCc
Q 044158 661 RNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGE----IPSRIGELIRIHTLNLSRNNLTG 736 (892)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~ 736 (892)
....+.|+.|++++|.+++. +|..+..+++|+.|+|++|++++
T Consensus 309 ---------------------------------~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 355 (461)
T 1z7x_W 309 ---------------------------------LEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLED 355 (461)
T ss_dssp ---------------------------------TSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHH
T ss_pred ---------------------------------ccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCcccc
Confidence 01123689999999999876 56677888999999999999987
Q ss_pred cccccccC-----CCCCCEEECCCCcCcc----cCCccccCCCCCCEEEccCCccccc
Q 044158 737 TIPVTFSN-----LRQVESLDLSYNNLTG----KIPPRLVELNALAVFTVAHNNLSGK 785 (892)
Q Consensus 737 ~~p~~~~~-----l~~L~~LdLs~N~l~g----~ip~~l~~l~~L~~l~ls~N~l~g~ 785 (892)
..+..+.. .++|+.|++++|++++ .+|..+..+++|++||+++|++++.
T Consensus 356 ~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 356 AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred ccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 76665543 6799999999999996 7888999999999999999998764
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.5e-30 Score=280.94 Aligned_cols=82 Identities=18% Similarity=0.252 Sum_probs=48.8
Q ss_pred ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCC------CCCCEEECCCCcCc--ccCCccccCCC
Q 044158 699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNL------RQVESLDLSYNNLT--GKIPPRLVELN 770 (892)
Q Consensus 699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~LdLs~N~l~--g~ip~~l~~l~ 770 (892)
+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..|... .+|+.|++++|.+. +..|..+..++
T Consensus 242 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~ 320 (332)
T 2ft3_A 242 TLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320 (332)
T ss_dssp TCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBC
T ss_pred CCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccc
Confidence 3555555555555 455556666666666666666665555555442 45667777777766 55566667777
Q ss_pred CCCEEEccCCc
Q 044158 771 ALAVFTVAHNN 781 (892)
Q Consensus 771 ~L~~l~ls~N~ 781 (892)
.|+.+++++|+
T Consensus 321 ~L~~l~l~~n~ 331 (332)
T 2ft3_A 321 DRLAIQFGNYK 331 (332)
T ss_dssp CSTTEEC----
T ss_pred hhhhhhccccc
Confidence 77777776663
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=4.2e-30 Score=277.29 Aligned_cols=269 Identities=23% Similarity=0.268 Sum_probs=135.7
Q ss_pred cCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECC
Q 044158 454 NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP 533 (892)
Q Consensus 454 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 533 (892)
++++|++++|++++..+..|..+++|++|++++|.+++..|..|..+++|++|++++|+++. +|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc-cChhhc--ccccEEECC
Confidence 34444444444444333344444444444444444444444444444455555555544442 222221 345555555
Q ss_pred CCcccCCCcccccCCCCCcEEeCCCCccCCC-cccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccc
Q 044158 534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGR-PLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEG 612 (892)
Q Consensus 534 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 612 (892)
+|.+++..+..+.++++|++|++++|.++.. ..+..+..+++|++|++++|+++. +|..+. ++|++|++++|++++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~ 206 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITK 206 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCc
Confidence 5555444444455555555555555554321 123344555555555555555542 333222 455555555555555
Q ss_pred cCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeeccccccc
Q 044158 613 EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTY 692 (892)
Q Consensus 613 ~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (892)
..|..+..+++|++|++++|++++..+..+..
T Consensus 207 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------------------------------------------------ 238 (330)
T 1xku_A 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLAN------------------------------------------------ 238 (330)
T ss_dssp ECTGGGTTCTTCCEEECCSSCCCEECTTTGGG------------------------------------------------
T ss_pred cCHHHhcCCCCCCEEECCCCcCceeChhhccC------------------------------------------------
Confidence 55555555555555555555555333322221
Q ss_pred CCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccC------CCCCCEEECCCCcCcc--cCCc
Q 044158 693 KGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSN------LRQVESLDLSYNNLTG--KIPP 764 (892)
Q Consensus 693 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~------l~~L~~LdLs~N~l~g--~ip~ 764 (892)
+++|+.|++++|+++ .+|..+..+++|++|++++|++++..+..|.. ...++.|++++|.+.. ..|.
T Consensus 239 ----l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~ 313 (330)
T 1xku_A 239 ----TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313 (330)
T ss_dssp ----STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG
T ss_pred ----CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcc
Confidence 124555555555555 45556666666666666666666555555533 2566677777777652 4456
Q ss_pred cccCCCCCCEEEccCCc
Q 044158 765 RLVELNALAVFTVAHNN 781 (892)
Q Consensus 765 ~l~~l~~L~~l~ls~N~ 781 (892)
.+..+..++.+++++|+
T Consensus 314 ~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 314 TFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GGTTCCCGGGEEC----
T ss_pred ccccccceeEEEecccC
Confidence 66667777777777663
No 46
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-33 Score=320.58 Aligned_cols=306 Identities=18% Similarity=0.140 Sum_probs=188.2
Q ss_pred CCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCC----CCCCCCCCCCccEEEccCCcCCCCCchhhhhcCC-
Q 044158 330 HHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGP----FRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLP- 404 (892)
Q Consensus 330 ~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~- 404 (892)
+++++|+++++++.......++..+++|++|++++|.+++. .+..+..+++|++|++++|.+.+..+..++..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45777888888777655555577888899999988887642 2234556788888888888887555555555555
Q ss_pred ---CCcEEECcCCcCCc----cCchhccCCCCCcEEECcCCcCccccchhHhh----cCccCcEEEccCCcccccc----
Q 044158 405 ---NLGFLTISFNAFNG----SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAM----GCFNLEYLLLSNNSLQGQL---- 469 (892)
Q Consensus 405 ---~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~----~~~~L~~L~L~~n~l~~~~---- 469 (892)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+.. ..++|++|++++|.+++..
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 69999999998874 45778888889999999999887544443332 2456888888888877643
Q ss_pred cccccccCCCcEEeecCccCcCCCCcccc-----cCCCCcEEEccCCcCCCC----ccccccCCCCCcEEECCCCcccCC
Q 044158 470 FSKKINLTKLKRLNLDGNHFIGGIPESLS-----NCSSLQGLYISDNDISGS----IPTWMGNISFLDAIIMPDNHLEGP 540 (892)
Q Consensus 470 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-----~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~ 540 (892)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 44555667788888887776644333332 245777777777777653 345555566666666666665432
Q ss_pred C-----cccccCCCCCcEEeCCCCccCCCc---ccccccCCCCccEEEccCCccCccCChhhhc-----CCCCCEEeccc
Q 044158 541 I-----PSEFCQLDYLEILDLSKNNIAGRP---LNGAFSKCSYLLTLDLCNNRLNGNIPNWMGR-----LSQLRYLILAN 607 (892)
Q Consensus 541 ~-----~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-----l~~L~~L~L~~ 607 (892)
. +..+..+++|++|++++|.++... ++..+..+++|++|++++|.+++..+..+.. .++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 2 111223555666666666555311 3344444555555555555554333322221 13555555555
Q ss_pred cccccc----CCccccCCCCCCEEEcCCCcCC
Q 044158 608 NNFEGE----VPLRLCQLQKLRLLDLSHNNFS 635 (892)
Q Consensus 608 n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 635 (892)
|.+++. ++..+..+++|++|++++|+++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~ 354 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLE 354 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence 555433 2333344455555555555443
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=9e-30 Score=274.70 Aligned_cols=244 Identities=22% Similarity=0.247 Sum_probs=156.3
Q ss_pred CCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEE
Q 044158 379 KNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYL 458 (892)
Q Consensus 379 ~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L 458 (892)
.+++.++++++.++ .+|..+ .+.+++|++++|.+++..+..|.++++|++|++++|++++..|.. +..+++|++|
T Consensus 31 c~l~~l~~~~~~l~-~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L 105 (330)
T 1xku_A 31 CHLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERL 105 (330)
T ss_dssp EETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTT-TTTCTTCCEE
T ss_pred CCCeEEEecCCCcc-ccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHH-hcCCCCCCEE
Confidence 36788888888887 677654 467888888888888777767888888888888888887333443 3567777777
Q ss_pred EccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCC--CccccccCCCCCcEEECCCCc
Q 044158 459 LLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISG--SIPTWMGNISFLDAIIMPDNH 536 (892)
Q Consensus 459 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~n~ 536 (892)
++++|.++. +|..+. ++|++|++++|++.+..+..+.++++|++|++++|++.. ..+..+..+++|+.|++++|.
T Consensus 106 ~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 106 YLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp ECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 777777764 333332 567777777777766655666777777777777776642 445556666666666666666
Q ss_pred ccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCc
Q 044158 537 LEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPL 616 (892)
Q Consensus 537 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 616 (892)
++. +|..+. ++|++|++++|++++ ..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|.
T Consensus 183 l~~-l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~ 257 (330)
T 1xku_A 183 ITT-IPQGLP--PSLTELHLDGNKITK-VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPG 257 (330)
T ss_dssp CCS-CCSSCC--TTCSEEECTTSCCCE-ECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCT
T ss_pred ccc-CCcccc--ccCCEEECCCCcCCc-cCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCCh
Confidence 653 333332 456666666666554 23445555666666666666665555555555666666666666655 4555
Q ss_pred cccCCCCCCEEEcCCCcCC
Q 044158 617 RLCQLQKLRLLDLSHNNFS 635 (892)
Q Consensus 617 ~~~~l~~L~~L~Ls~N~l~ 635 (892)
.+..+++|++|++++|+++
T Consensus 258 ~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 258 GLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp TTTTCSSCCEEECCSSCCC
T ss_pred hhccCCCcCEEECCCCcCC
Confidence 5555566666666666555
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.5e-29 Score=273.19 Aligned_cols=266 Identities=20% Similarity=0.253 Sum_probs=163.3
Q ss_pred CCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCC
Q 044158 478 KLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLS 557 (892)
Q Consensus 478 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 557 (892)
+|+.|++++|.+.+..|..|.++++|++|++++|++++..|..+..+++|++|++++|.++ .+|..+. ++|++|+++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECC
Confidence 3444444444444333334444444444444444444444444444444444444444444 2333332 466666666
Q ss_pred CCccCCCcccccccCCCCccEEEccCCccC--ccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158 558 KNNIAGRPLNGAFSKCSYLLTLDLCNNRLN--GNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635 (892)
Q Consensus 558 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 635 (892)
+|+++++ .+..|..+++|++|++++|.++ +..|..+..+ +|++|++++|++++ +|..+. ++|++|++++|+++
T Consensus 132 ~n~i~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 132 DNRIRKV-PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQ 206 (332)
T ss_dssp SSCCCCC-CSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCC
T ss_pred CCccCcc-CHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCC
Confidence 6666652 2345666667777777777664 2455566666 77777777777774 454443 67777888888777
Q ss_pred CCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCC
Q 044158 636 GQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIP 715 (892)
Q Consensus 636 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 715 (892)
+..|..+.. +++|+.|++++|.+++..|
T Consensus 207 ~~~~~~l~~----------------------------------------------------l~~L~~L~L~~N~l~~~~~ 234 (332)
T 2ft3_A 207 AIELEDLLR----------------------------------------------------YSKLYRLGLGHNQIRMIEN 234 (332)
T ss_dssp CCCTTSSTT----------------------------------------------------CTTCSCCBCCSSCCCCCCT
T ss_pred ccCHHHhcC----------------------------------------------------CCCCCEEECCCCcCCcCCh
Confidence 554444432 2357778888888887777
Q ss_pred ccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCC------CCCCEEEccCCccc--ccCC
Q 044158 716 SRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVEL------NALAVFTVAHNNLS--GKIP 787 (892)
Q Consensus 716 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l------~~L~~l~ls~N~l~--g~ip 787 (892)
..+..+++|+.|+|++|+++ .+|..++.+++|+.|++++|++++..+..+... ..|+.+++++|++. +..|
T Consensus 235 ~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~ 313 (332)
T 2ft3_A 235 GSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313 (332)
T ss_dssp TGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCG
T ss_pred hHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCc
Confidence 77888888888888888888 677778888888888888888887666666543 56788888888876 4444
Q ss_pred ccccccCCCCcccccCC
Q 044158 788 ERIAQFATFDEDSYEGN 804 (892)
Q Consensus 788 ~~~~~~~~~~~~~~~gN 804 (892)
..+..+..+....+.+|
T Consensus 314 ~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 314 ATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGGTTBCCSTTEEC---
T ss_pred ccccccchhhhhhcccc
Confidence 44455555555555554
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=6.4e-29 Score=270.66 Aligned_cols=280 Identities=20% Similarity=0.183 Sum_probs=164.6
Q ss_pred CcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEcc
Q 044158 430 LIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYIS 509 (892)
Q Consensus 430 L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 509 (892)
....+.+++.++ .+|..++ ++|++|++++|.+++..+..+.++++|++|++++|++++..|..|.++++|++|+++
T Consensus 33 ~~~c~~~~~~l~-~iP~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 33 NGICKGSSGSLN-SIPSGLT---EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp TSEEECCSTTCS-SCCTTCC---TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CeEeeCCCCCcc-ccccccc---ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 334555555555 5554332 355666666666655544455666666666666666665555566666666666666
Q ss_pred CCcCCCCccccccCCCCCcEEECCCCcccCCCc-ccccCCCCCcEEeCCCCc-cCCCcccccccCCCCccEEEccCCccC
Q 044158 510 DNDISGSIPTWMGNISFLDAIIMPDNHLEGPIP-SEFCQLDYLEILDLSKNN-IAGRPLNGAFSKCSYLLTLDLCNNRLN 587 (892)
Q Consensus 510 ~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~L~~L~L~~n~l~ 587 (892)
+|++++..+..+..+++|++|++++|++++..+ ..+..+++|++|++++|. ++. ..+..+.++++|++|++++|+++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK-IQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCE-ECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccc-cCHHHccCCCCCCEEECCCCCcC
Confidence 666665444445666666666666666653333 356666677777777663 443 23456666777777777777777
Q ss_pred ccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccc
Q 044158 588 GNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIV 667 (892)
Q Consensus 588 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (892)
+..|..+..+++|++|++++|+++...+..+..+++|+.|++++|++++..+..+..
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~----------------------- 244 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST----------------------- 244 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc-----------------------
Confidence 666777777777777777777765332223344677777777777766433222111
Q ss_pred cccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCc----ccccccc
Q 044158 668 SYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTG----TIPVTFS 743 (892)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~ 743 (892)
......++.++|++|.+++ .+|..++
T Consensus 245 --------------------------------------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~ 274 (353)
T 2z80_A 245 --------------------------------------------------GETNSLIKKFTFRNVKITDESLFQVMKLLN 274 (353)
T ss_dssp ----------------------------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred --------------------------------------------------ccccchhhccccccccccCcchhhhHHHHh
Confidence 0112234444444444443 3556666
Q ss_pred CCCCCCEEECCCCcCcccCCcc-ccCCCCCCEEEccCCcccccCCc
Q 044158 744 NLRQVESLDLSYNNLTGKIPPR-LVELNALAVFTVAHNNLSGKIPE 788 (892)
Q Consensus 744 ~l~~L~~LdLs~N~l~g~ip~~-l~~l~~L~~l~ls~N~l~g~ip~ 788 (892)
.+++|+.||+++|+++ .+|.. +..+++|++|++++|+++|.+|.
T Consensus 275 ~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 275 QISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp TCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 6777777777777776 44444 46677777777777777776653
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.8e-28 Score=261.53 Aligned_cols=250 Identities=20% Similarity=0.265 Sum_probs=174.5
Q ss_pred EEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCC--CcccccCCCCCcEEeCCC
Q 044158 481 RLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGP--IPSEFCQLDYLEILDLSK 558 (892)
Q Consensus 481 ~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~ 558 (892)
.++.+++.++ .+|..+. ++|++|++++|+++...+..+..+++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4445554444 2333222 4556666666666544444455666666666666665522 245555667777777777
Q ss_pred CccCCCcccccccCCCCccEEEccCCccCccCC-hhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCC-
Q 044158 559 NNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP-NWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSG- 636 (892)
Q Consensus 559 n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g- 636 (892)
|.++. ++..+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++
T Consensus 88 n~i~~--l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 88 NGVIT--MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp CSEEE--EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred Ccccc--ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 77663 44556677777777777777765544 466777777777777777777777777777777888887777764
Q ss_pred CCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCc
Q 044158 637 QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPS 716 (892)
Q Consensus 637 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 716 (892)
.+|..+.. +++|+.|++++|.+++..|.
T Consensus 166 ~~~~~~~~----------------------------------------------------l~~L~~L~Ls~n~l~~~~~~ 193 (306)
T 2z66_A 166 FLPDIFTE----------------------------------------------------LRNLTFLDLSQCQLEQLSPT 193 (306)
T ss_dssp EECSCCTT----------------------------------------------------CTTCCEEECTTSCCCEECTT
T ss_pred cchhHHhh----------------------------------------------------CcCCCEEECCCCCcCCcCHH
Confidence 34443332 33577788888888877788
Q ss_pred cccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCC-CCCEEEccCCcccccCC
Q 044158 717 RIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELN-ALAVFTVAHNNLSGKIP 787 (892)
Q Consensus 717 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~-~L~~l~ls~N~l~g~ip 787 (892)
.+..+++|+.|+|++|++++..+..+..+++|+.||+++|++++.+|..+..++ +|++|++++|++++..+
T Consensus 194 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 194 AFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp TTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred HhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 888888999999999999887777888899999999999999988888888884 89999999999987654
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=1.6e-28 Score=267.53 Aligned_cols=256 Identities=19% Similarity=0.248 Sum_probs=152.1
Q ss_pred CCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEc
Q 044158 502 SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL 581 (892)
Q Consensus 502 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L 581 (892)
+|++|++++|++++..+..+..+++|+.|++++|.+++..|..|.++++|++|++++|++++++ +..+.++++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCEEEC
Confidence 4444444444444333334444444444444444444444444555555555555555554311 223445555555555
Q ss_pred cCCccCccCC-hhhhcCCCCCEEecccc-cccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccc
Q 044158 582 CNNRLNGNIP-NWMGRLSQLRYLILANN-NFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPT 659 (892)
Q Consensus 582 ~~n~l~~~~p-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~ 659 (892)
++|++++..+ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|++++..|..+..+
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l-------------- 197 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSI-------------- 197 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTC--------------
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhcc--------------
Confidence 5555543222 24455555555555555 2443444455555555555555555554444433321
Q ss_pred cccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCcccc
Q 044158 660 YRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIP 739 (892)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 739 (892)
++|+.|++++|.++...+..+..+++|+.|++++|++++..+
T Consensus 198 --------------------------------------~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 239 (353)
T 2z80_A 198 --------------------------------------QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239 (353)
T ss_dssp --------------------------------------SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCC
T ss_pred --------------------------------------ccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccc
Confidence 245566666666643222234456777788888887776655
Q ss_pred cccc---CCCCCCEEECCCCcCcc----cCCccccCCCCCCEEEccCCcccccCCcc-ccccCCCCcccccCCCCCCCCC
Q 044158 740 VTFS---NLRQVESLDLSYNNLTG----KIPPRLVELNALAVFTVAHNNLSGKIPER-IAQFATFDEDSYEGNPFLCGPP 811 (892)
Q Consensus 740 ~~~~---~l~~L~~LdLs~N~l~g----~ip~~l~~l~~L~~l~ls~N~l~g~ip~~-~~~~~~~~~~~~~gN~~lc~~~ 811 (892)
..+. ....++.+++++|.+++ .+|..+..+++|+.||+++|+++ .+|.. +..+..+....+.+||+.|.|+
T Consensus 240 ~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 240 SELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp C------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 5443 46778999999999987 47888999999999999999999 56654 4678888899999999999875
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=7e-30 Score=299.64 Aligned_cols=276 Identities=13% Similarity=0.087 Sum_probs=119.5
Q ss_pred CCCCccEEEccCCcCccccchhhhhcCCC-CCEEEccCCcC-cCC-CCCCCCCCCCccEEEccCCcCCCCCch---hhhh
Q 044158 328 HQHHLEFVIISDVNMRGEFPSWLLENNTN-LRSIILANNSL-SGP-FRLPTRSRKNIIALDISYNKLQGHIPV---EIGK 401 (892)
Q Consensus 328 ~~~~L~~L~l~~~~~~~~~p~~~~~~~~~-L~~L~L~~n~l-~~~-~~~~~~~~~~L~~L~l~~n~l~~~i~~---~~~~ 401 (892)
.+++|++|++++|.+.+..+..+...++. |++|++++|.. +.. .......+++|++|++++|.+++.-.. .+..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 55667777777666665555443322333 66666666541 100 000112345555555555555433111 1222
Q ss_pred cCCCCcEEECcCCcCCc----cCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCccc---cccccccc
Q 044158 402 VLPNLGFLTISFNAFNG----SIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ---GQLFSKKI 474 (892)
Q Consensus 402 ~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~---~~~~~~~~ 474 (892)
.+++|++|++++|.+++ .++..+.++++|++|++++|.+. .++.. +..+++|+.|+++..... +..+..+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHH-HhhhhHHHhhcccccccccchHHHHHHhh
Confidence 35555555555555541 22233344555555555555554 24422 234555555555432211 12223334
Q ss_pred ccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCcc-ccccCCCCCcEEECCCCcccCCCcccccCCCCCcE
Q 044158 475 NLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIP-TWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEI 553 (892)
Q Consensus 475 ~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 553 (892)
.+++|+.|+++++. .+.+|..+..+++|++|++++|.+++... ..+..+++|+.|+++++-..+.++..+..+++|++
T Consensus 268 ~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 268 FPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred ccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 44555555554432 22344444445555555555555432221 22344455555555422111122222233444555
Q ss_pred EeCC-----------CCccCCCcccccccCCCCccEEEccCCccCccCChhhhc-CCCCCEEecc
Q 044158 554 LDLS-----------KNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGR-LSQLRYLILA 606 (892)
Q Consensus 554 L~Ls-----------~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~ 606 (892)
|+++ .|.+++..++.....+++|++|+++.|.+++..+..++. +++|+.|+++
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~ 411 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV 411 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred EEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence 5554 133332112222333444555555444444443333332 4445555443
No 53
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6.5e-28 Score=257.22 Aligned_cols=259 Identities=20% Similarity=0.239 Sum_probs=184.6
Q ss_pred CCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCC--ccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEE
Q 044158 477 TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGS--IPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL 554 (892)
Q Consensus 477 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 554 (892)
++|++|++++|.+....+..|.++++|++|++++|+++.. .+..+..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 3455555555555433333345555555555555555422 2344455666666666666665 355567777788888
Q ss_pred eCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccc-cCCccccCCCCCCEEEcCCCc
Q 044158 555 DLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEG-EVPLRLCQLQKLRLLDLSHNN 633 (892)
Q Consensus 555 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~N~ 633 (892)
++++|++++.+....+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|+
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 8888887764433567788888888888888887778888888888888888888876 577888888889999999988
Q ss_pred CCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCcccccc
Q 044158 634 FSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGE 713 (892)
Q Consensus 634 l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 713 (892)
+++..|..+.. +++|+.|++++|.+++.
T Consensus 187 l~~~~~~~~~~----------------------------------------------------l~~L~~L~L~~N~l~~~ 214 (306)
T 2z66_A 187 LEQLSPTAFNS----------------------------------------------------LSSLQVLNMSHNNFFSL 214 (306)
T ss_dssp CCEECTTTTTT----------------------------------------------------CTTCCEEECTTSCCSBC
T ss_pred cCCcCHHHhcC----------------------------------------------------CCCCCEEECCCCccCcc
Confidence 88655655443 23688899999999887
Q ss_pred CCccccccCCCCEEEccCccCCccccccccCC-CCCCEEECCCCcCcccCCc--cccCCCCCCEEEccCCcccccCCc
Q 044158 714 IPSRIGELIRIHTLNLSRNNLTGTIPVTFSNL-RQVESLDLSYNNLTGKIPP--RLVELNALAVFTVAHNNLSGKIPE 788 (892)
Q Consensus 714 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~l~ls~N~l~g~ip~ 788 (892)
.+..+..+++|+.|+|++|++++.+|..+..+ ++|+.|+|++|.+++..+. ...-+...+.+.+..+.+.+..|.
T Consensus 215 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~ 292 (306)
T 2z66_A 215 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPS 292 (306)
T ss_dssp CSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESG
T ss_pred ChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCch
Confidence 77788999999999999999999999999988 4999999999999875321 112223344455666777777665
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.2e-27 Score=256.60 Aligned_cols=235 Identities=20% Similarity=0.282 Sum_probs=157.2
Q ss_pred cCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEe
Q 044158 476 LTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILD 555 (892)
Q Consensus 476 l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 555 (892)
.+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.++ .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 466777777777776 56666777777777777777776 56666666666666666666665 4455555555555555
Q ss_pred CCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158 556 LSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635 (892)
Q Consensus 556 Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 635 (892)
+++|++.+ .+|..+.. . ..+..++++++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 157 L~~n~~~~-~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~ 219 (328)
T 4fcg_A 157 IRACPELT-ELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219 (328)
T ss_dssp EEEETTCC-CCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC
T ss_pred CCCCCCcc-ccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC
Confidence 55555444 33333221 0 00111234666777777777666 56666666777777777777666
Q ss_pred CCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCC
Q 044158 636 GQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIP 715 (892)
Q Consensus 636 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 715 (892)
+ +|..+.. +++|+.|++++|.+.+.+|
T Consensus 220 ~-l~~~l~~----------------------------------------------------l~~L~~L~Ls~n~~~~~~p 246 (328)
T 4fcg_A 220 A-LGPAIHH----------------------------------------------------LPKLEELDLRGCTALRNYP 246 (328)
T ss_dssp C-CCGGGGG----------------------------------------------------CTTCCEEECTTCTTCCBCC
T ss_pred c-Cchhhcc----------------------------------------------------CCCCCEEECcCCcchhhhH
Confidence 3 4433322 2256677777777777777
Q ss_pred ccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccc
Q 044158 716 SRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS 783 (892)
Q Consensus 716 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~ 783 (892)
..++.+++|+.|+|++|++.+.+|..++++++|+.|||++|++.+.+|..+.++++|+.+++..|.+.
T Consensus 247 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 247 PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred HHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 77888888888888888888888888888888888888888888888888888888888888766543
No 55
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=8.1e-30 Score=299.12 Aligned_cols=410 Identities=13% Similarity=0.064 Sum_probs=290.5
Q ss_pred ccccCCCCccEEEccCCcCc---cccc-----------hhhhhcCCCCCEEEccCCcCcCCCCCCCCC-CC-CccEEEcc
Q 044158 324 KFLYHQHHLEFVIISDVNMR---GEFP-----------SWLLENNTNLRSIILANNSLSGPFRLPTRS-RK-NIIALDIS 387 (892)
Q Consensus 324 ~~l~~~~~L~~L~l~~~~~~---~~~p-----------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-~~-~L~~L~l~ 387 (892)
..+..+++|++|+++++... +.+| ..+...+++|++|+|++|.+++.....+.. ++ +|++|+++
T Consensus 67 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~ 146 (592)
T 3ogk_B 67 RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLD 146 (592)
T ss_dssp HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEE
T ss_pred HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECc
Confidence 34445666777777665321 1111 223447899999999999776543333333 33 49999999
Q ss_pred CCc-CCCCCchhhhhcCCCCcEEECcCCcCCcc----CchhccCCCCCcEEECcCCcCcc----ccchhHhhcCccCcEE
Q 044158 388 YNK-LQGHIPVEIGKVLPNLGFLTISFNAFNGS----IPSSFGDMNSLIYLDLSNNQLTG----EIPEHLAMGCFNLEYL 458 (892)
Q Consensus 388 ~n~-l~~~i~~~~~~~l~~L~~L~L~~n~~~~~----~p~~~~~l~~L~~L~L~~n~l~~----~i~~~~~~~~~~L~~L 458 (892)
+|. ++......+...+++|++|++++|.+.+. ++..+..+++|++|++++|.+++ .++. ++..+++|+.|
T Consensus 147 ~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L 225 (592)
T 3ogk_B 147 KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSV 225 (592)
T ss_dssp SCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEE
T ss_pred CCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEE
Confidence 886 22111122333589999999999988765 33455678899999999998862 2222 33578999999
Q ss_pred EccCCcccccccccccccCCCcEEeecCccCc---CCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCC
Q 044158 459 LLSNNSLQGQLFSKKINLTKLKRLNLDGNHFI---GGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDN 535 (892)
Q Consensus 459 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n 535 (892)
++++|.+.+ ++..+..+++|+.|+++..... +..+..+..+++|+.|+++++. .+.+|..+..+++|++|++++|
T Consensus 226 ~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~ 303 (592)
T 3ogk_B 226 KVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYA 303 (592)
T ss_dssp ECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTC
T ss_pred eccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCC
Confidence 999998886 5677888999999999864332 2344567788899999998864 3467778888999999999999
Q ss_pred cccCCCc-ccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccC-----------CccCcc-CChhhhcCCCCCE
Q 044158 536 HLEGPIP-SEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCN-----------NRLNGN-IPNWMGRLSQLRY 602 (892)
Q Consensus 536 ~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~-----------n~l~~~-~p~~~~~l~~L~~ 602 (892)
.+++... ..+..+++|++|+++ +.+....++.....+++|++|++++ |.+++. ++.....+++|++
T Consensus 304 ~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 304 LLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp CCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred cCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 8765443 346788999999998 5554434455567789999999993 566543 2333556899999
Q ss_pred EecccccccccCCccccC-CCCCCEEEcC----CCcCCCCCCc-cccCCcccccccccccccccccccccccccCCCCCC
Q 044158 603 LILANNNFEGEVPLRLCQ-LQKLRLLDLS----HNNFSGQIPP-CLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMG 676 (892)
Q Consensus 603 L~L~~n~l~~~~~~~~~~-l~~L~~L~Ls----~N~l~g~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (892)
|+++.|.+++..+..+.. +++|+.|+++ .|++++.... .+...
T Consensus 383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~------------------------------- 431 (592)
T 3ogk_B 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL------------------------------- 431 (592)
T ss_dssp EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH-------------------------------
T ss_pred EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH-------------------------------
Confidence 999989988877777765 8899999996 5666532110 00000
Q ss_pred CcceeEeeecccccccCCCCcCccceeeccCc--cccccCCccccc-cCCCCEEEccCccCCc-cccccccCCCCCCEEE
Q 044158 677 EKETIDFTTKERSYTYKGQPLESIHGLDLSCN--KLIGEIPSRIGE-LIRIHTLNLSRNNLTG-TIPVTFSNLRQVESLD 752 (892)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~Ld 752 (892)
...+++|+.|+++++ .+++..+..++. +++|+.|+|++|++++ .++..+..+++|+.|+
T Consensus 432 -----------------~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~ 494 (592)
T 3ogk_B 432 -----------------LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLE 494 (592)
T ss_dssp -----------------HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEE
T ss_pred -----------------HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeee
Confidence 012447899999753 477766666654 8899999999999987 4556668899999999
Q ss_pred CCCCcCccc-CCccccCCCCCCEEEccCCccccc
Q 044158 753 LSYNNLTGK-IPPRLVELNALAVFTVAHNNLSGK 785 (892)
Q Consensus 753 Ls~N~l~g~-ip~~l~~l~~L~~l~ls~N~l~g~ 785 (892)
+++|.+++. ++.....+++|+.|++++|+++..
T Consensus 495 l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp EESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred ccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 999998865 444556789999999999998765
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=6.3e-27 Score=262.85 Aligned_cols=252 Identities=25% Similarity=0.299 Sum_probs=217.9
Q ss_pred CCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCC
Q 044158 478 KLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLS 557 (892)
Q Consensus 478 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 557 (892)
..+.++.++..++ .+|..+. ++++.|+|++|++++..+..|..+++|+.|+|++|.+++..+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4678888888877 5676554 689999999999998888899999999999999999998888899999999999999
Q ss_pred CCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccc-ccccCCccccCCCCCCEEEcCCCcCCC
Q 044158 558 KNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNN-FEGEVPLRLCQLQKLRLLDLSHNNFSG 636 (892)
Q Consensus 558 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~g 636 (892)
+|+++.++ +..|..+++|++|++++|+++...+..|..+++|++|++++|. +....+..+..+++|++|++++|+++
T Consensus 121 ~n~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 121 DNRLTTIP-NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp SSCCSSCC-TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCcCCeeC-HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 99999733 5578999999999999999997777789999999999999954 54444457889999999999999987
Q ss_pred CCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCc
Q 044158 637 QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPS 716 (892)
Q Consensus 637 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 716 (892)
.+|. + ..+++|+.|+|++|.+++..|.
T Consensus 199 ~~~~-~----------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~ 225 (440)
T 3zyj_A 199 EIPN-L----------------------------------------------------TPLIKLDELDLSGNHLSAIRPG 225 (440)
T ss_dssp SCCC-C----------------------------------------------------TTCSSCCEEECTTSCCCEECTT
T ss_pred cccc-c----------------------------------------------------CCCcccCEEECCCCccCccChh
Confidence 4442 1 1244689999999999988899
Q ss_pred cccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCC
Q 044158 717 RIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIP 787 (892)
Q Consensus 717 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 787 (892)
.|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|++.+...
T Consensus 226 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 99999999999999999999999999999999999999999998888888999999999999999987554
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3.7e-27 Score=252.82 Aligned_cols=236 Identities=17% Similarity=0.239 Sum_probs=203.0
Q ss_pred cCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEE
Q 044158 451 GCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAI 530 (892)
Q Consensus 451 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 530 (892)
....++.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|+++ .+|..+..+++|+.|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 3578999999999998 66778888999999999999999 88999999999999999999999 779999999999999
Q ss_pred ECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccc
Q 044158 531 IMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNF 610 (892)
Q Consensus 531 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l 610 (892)
++++|++.+.+|..+... ..+..+.++++|++|++++|+++ .+|..++.+++|++|++++|++
T Consensus 156 ~L~~n~~~~~~p~~~~~~----------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 156 SIRACPELTELPEPLAST----------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEEETTCCCCCSCSEEE----------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred ECCCCCCccccChhHhhc----------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence 999999988888766531 12235677888888888888887 7788888888888888888888
Q ss_pred cccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeeccccc
Q 044158 611 EGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSY 690 (892)
Q Consensus 611 ~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (892)
++ +|..+..+++|++|++++|++.+.+|..+..+
T Consensus 219 ~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l--------------------------------------------- 252 (328)
T 4fcg_A 219 SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGR--------------------------------------------- 252 (328)
T ss_dssp CC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC---------------------------------------------
T ss_pred Cc-CchhhccCCCCCEEECcCCcchhhhHHHhcCC---------------------------------------------
Confidence 84 66678888888889998888888887766543
Q ss_pred ccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCc
Q 044158 691 TYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT 759 (892)
Q Consensus 691 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 759 (892)
++|+.|++++|.+.+.+|..++.+++|+.|+|++|++.+.+|..++++++|+.++++.|.+.
T Consensus 253 -------~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 253 -------APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp -------CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred -------CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 36888999998888899999999999999999999999999999999999999999987766
No 58
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1e-26 Score=262.11 Aligned_cols=252 Identities=21% Similarity=0.230 Sum_probs=219.2
Q ss_pred CCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCC
Q 044158 478 KLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLS 557 (892)
Q Consensus 478 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 557 (892)
....++.++..++ .+|..+. +++++|+|++|++++..+..|..+++|+.|+|++|.+++..+..|.++++|++|+|+
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4567888888877 5666554 689999999999998889999999999999999999998888999999999999999
Q ss_pred CCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccc-cccccCCccccCCCCCCEEEcCCCcCCC
Q 044158 558 KNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANN-NFEGEVPLRLCQLQKLRLLDLSHNNFSG 636 (892)
Q Consensus 558 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~g 636 (892)
+|+++++ .+..|..+++|++|+|++|++++..+..+..+++|++|++++| .+....+..+..+++|++|++++|++++
T Consensus 132 ~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLTVI-PSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCCSBC-CTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCcCCcc-ChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 9999973 3567899999999999999999777778999999999999995 4554444568899999999999999973
Q ss_pred CCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCc
Q 044158 637 QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPS 716 (892)
Q Consensus 637 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 716 (892)
+|. + ..+++|+.|++++|.+++..|.
T Consensus 211 -~~~-~----------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~~ 236 (452)
T 3zyi_A 211 -MPN-L----------------------------------------------------TPLVGLEELEMSGNHFPEIRPG 236 (452)
T ss_dssp -CCC-C----------------------------------------------------TTCTTCCEEECTTSCCSEECGG
T ss_pred -ccc-c----------------------------------------------------cccccccEEECcCCcCcccCcc
Confidence 332 1 1244789999999999998899
Q ss_pred cccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCC
Q 044158 717 RIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIP 787 (892)
Q Consensus 717 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 787 (892)
.|..+++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|+.|++++|++.+...
T Consensus 237 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 237 SFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp GGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred cccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence 99999999999999999999999999999999999999999998888888999999999999999987655
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.5e-26 Score=257.99 Aligned_cols=249 Identities=27% Similarity=0.249 Sum_probs=187.5
Q ss_pred cCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECC
Q 044158 454 NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP 533 (892)
Q Consensus 454 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 533 (892)
....++.++..++. +|..+ .++++.|+|++|++.+..+..|.++++|++|+|++|++++..+..|..+++|+.|+|+
T Consensus 44 ~~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSS-CCSCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCc-CCCCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 34567777777764 34433 2678888888888887777778888888888888888887777788888888888888
Q ss_pred CCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccC-ChhhhcCCCCCEEecccccccc
Q 044158 534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNI-PNWMGRLSQLRYLILANNNFEG 612 (892)
Q Consensus 534 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~ 612 (892)
+|++++..+..|..+++|++|++++|+++.+ .+..|..+++|++|++++|+..+.+ +..|.++++|++|++++|+++
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~- 198 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESI-PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR- 198 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCccccc-CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-
Confidence 8888866666788888888888888888763 3456778888888888884433343 446778888888888888887
Q ss_pred cCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeeccccccc
Q 044158 613 EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTY 692 (892)
Q Consensus 613 ~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (892)
.+| .+..+++|+.|+|++|++++..|..+..
T Consensus 199 ~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------ 229 (440)
T 3zyj_A 199 EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG------------------------------------------------ 229 (440)
T ss_dssp SCC-CCTTCSSCCEEECTTSCCCEECTTTTTT------------------------------------------------
T ss_pred ccc-ccCCCcccCEEECCCCccCccChhhhcc------------------------------------------------
Confidence 445 4677888888888888887655554443
Q ss_pred CCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcc
Q 044158 693 KGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG 760 (892)
Q Consensus 693 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g 760 (892)
+++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 230 ----l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 230 ----LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp ----CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred ----CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 2357788888888887777778888888888888888887777777888888888888887763
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=2.6e-26 Score=258.75 Aligned_cols=250 Identities=23% Similarity=0.227 Sum_probs=208.3
Q ss_pred cCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECC
Q 044158 454 NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP 533 (892)
Q Consensus 454 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 533 (892)
....++.++..++. +|..+ .++++.|+|++|.+.+..+..|.++++|++|+|++|++++..+..|..+++|+.|+|+
T Consensus 55 ~~~~v~c~~~~l~~-iP~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCc-cCCCC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 35678888888774 44443 3689999999999998888889999999999999999998888889999999999999
Q ss_pred CCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCC-hhhhcCCCCCEEecccccccc
Q 044158 534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP-NWMGRLSQLRYLILANNNFEG 612 (892)
Q Consensus 534 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~ 612 (892)
+|++++..+..|..+++|++|++++|+++.+ .+..|..+++|++|++++|...+.++ ..+.++++|++|++++|++++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc
Confidence 9999977777788999999999999999863 35578889999999999854443444 578889999999999999985
Q ss_pred cCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeeccccccc
Q 044158 613 EVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTY 692 (892)
Q Consensus 613 ~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (892)
+| .+..+++|+.|+|++|++++..|..+..
T Consensus 211 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------ 240 (452)
T 3zyi_A 211 -MP-NLTPLVGLEELEMSGNHFPEIRPGSFHG------------------------------------------------ 240 (452)
T ss_dssp -CC-CCTTCTTCCEEECTTSCCSEECGGGGTT------------------------------------------------
T ss_pred -cc-cccccccccEEECcCCcCcccCcccccC------------------------------------------------
Confidence 44 4788899999999999998766655543
Q ss_pred CCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCccc
Q 044158 693 KGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGK 761 (892)
Q Consensus 693 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ 761 (892)
+++|+.|++++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+...
T Consensus 241 ----l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 241 ----LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp ----CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred ----ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 33688899999999988888899999999999999999988888888999999999999988743
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.1e-26 Score=244.98 Aligned_cols=224 Identities=25% Similarity=0.254 Sum_probs=126.1
Q ss_pred cEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEcc
Q 044158 382 IALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS 461 (892)
Q Consensus 382 ~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~ 461 (892)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.++ .++...+.++++|++|+++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 88 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLS 88 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccc-eeCHhhcCCccCCCEEeCC
Confidence 45555555555 555433 456677777777766655566666666666666666666 3322333455566666666
Q ss_pred CCc-ccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCC
Q 044158 462 NNS-LQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGP 540 (892)
Q Consensus 462 ~n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 540 (892)
+|. +....+..+..+++|++|++++|.+.+..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++.
T Consensus 89 ~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 664 5544455555566666666666666555555555666666666666666555444555555555555555555544
Q ss_pred CcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccc
Q 044158 541 IPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE 611 (892)
Q Consensus 541 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 611 (892)
.+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAH-VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCE-ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CHHHhcCccccCEEECCCCcccc-cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 44445555555555555555554 22444555555555555555555444444555555555555555554
No 62
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.8e-28 Score=258.41 Aligned_cols=265 Identities=22% Similarity=0.221 Sum_probs=171.0
Q ss_pred EEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCC
Q 044158 432 YLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDN 511 (892)
Q Consensus 432 ~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n 511 (892)
..+++.+.+. ..+..++..+++|++|++++|.+++..+..+..+++|++|++++|++++..+ +..+++|++|++++|
T Consensus 14 i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 14 IEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred Eeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 3344444443 3333343344445555555555544444444444445555555444443222 444444444444444
Q ss_pred cCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCC
Q 044158 512 DISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP 591 (892)
Q Consensus 512 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 591 (892)
.+++.. ..++|++|++++|++++.. ...+++|++|++++|++++..+
T Consensus 91 ------------------------~l~~l~-----~~~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~N~l~~~~~ 137 (317)
T 3o53_A 91 ------------------------YVQELL-----VGPSIETLHAANNNISRVS----CSRGQGKKNIYLANNKITMLRD 137 (317)
T ss_dssp ------------------------EEEEEE-----ECTTCCEEECCSSCCSEEE----ECCCSSCEEEECCSSCCCSGGG
T ss_pred ------------------------cccccc-----CCCCcCEEECCCCccCCcC----ccccCCCCEEECCCCCCCCccc
Confidence 443211 2256666666666666522 1234667777777777776666
Q ss_pred hhhhcCCCCCEEecccccccccCCcccc-CCCCCCEEEcCCCcCCCCCCccccCCccccccccccccccccccccccccc
Q 044158 592 NWMGRLSQLRYLILANNNFEGEVPLRLC-QLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYN 670 (892)
Q Consensus 592 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 670 (892)
..++.+++|++|++++|++++..+..+. .+++|++|++++|++++. |..
T Consensus 138 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~----------------------------- 187 (317)
T 3o53_A 138 LDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KGQ----------------------------- 187 (317)
T ss_dssp BCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-ECC-----------------------------
T ss_pred hhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-ccc-----------------------------
Confidence 6677777777777877777766666553 677888888888877632 110
Q ss_pred CCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCE
Q 044158 671 VGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVES 750 (892)
Q Consensus 671 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 750 (892)
..+++|+.|++++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.
T Consensus 188 ------------------------~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~ 241 (317)
T 3o53_A 188 ------------------------VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241 (317)
T ss_dssp ------------------------CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCE
T ss_pred ------------------------cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCE
Confidence 013468888888888885 4556889999999999999999 57888999999999
Q ss_pred EECCCCcCc-ccCCccccCCCCCCEEEcc-CCcccccCCc
Q 044158 751 LDLSYNNLT-GKIPPRLVELNALAVFTVA-HNNLSGKIPE 788 (892)
Q Consensus 751 LdLs~N~l~-g~ip~~l~~l~~L~~l~ls-~N~l~g~ip~ 788 (892)
|++++|+++ +.+|..+..++.|+.++++ .+.++|..|.
T Consensus 242 L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 242 FDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp EECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred EEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 999999999 7888889999999999998 4467776554
No 63
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=9.6e-27 Score=245.30 Aligned_cols=224 Identities=23% Similarity=0.248 Sum_probs=149.9
Q ss_pred cEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecC
Q 044158 407 GFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDG 486 (892)
Q Consensus 407 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 486 (892)
+.++.+++.++ .+|..+ .++|++|++++|.++ .++...+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56777777766 344433 357777777777776 45544445677777777777777766666777777777777777
Q ss_pred cc-CcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCc
Q 044158 487 NH-FIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRP 565 (892)
Q Consensus 487 n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 565 (892)
|+ +....|..+..+++|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|++|++++|+++++
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~- 168 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV- 168 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE-
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc-
Confidence 76 5554466677777777777777777766666667777777777777777665555566667777777777766652
Q ss_pred ccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158 566 LNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635 (892)
Q Consensus 566 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 635 (892)
.+..+..+++|++|++++|++++..|.++..+++|+.|++++|++++..+..+..+++|++|++++|++.
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 2334666677777777777776666666666677777777777776555555666667777777777665
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.8e-25 Score=257.56 Aligned_cols=266 Identities=24% Similarity=0.295 Sum_probs=150.3
Q ss_pred CCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEe
Q 044158 404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLN 483 (892)
Q Consensus 404 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 483 (892)
.+++.|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|++++. |. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC---CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEE
Confidence 35778888888877 5565554 67778888887777 5665 356677777777766642 22 456666666
Q ss_pred ecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCC
Q 044158 484 LDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 563 (892)
Q Consensus 484 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 563 (892)
+++|++++ +|. .+++|+.|++++|++++ +|.. +++ |++|++++|++++
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~------------------------L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPG------------------------LQELSVSDNQLAS 155 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTT------------------------CCEEECCSSCCSC
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCC------------------------CCEEECcCCcCCC
Confidence 66666654 232 34556666666666553 2221 244 4555555554443
Q ss_pred CcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCcccc
Q 044158 564 RPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLD 643 (892)
Q Consensus 564 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~ 643 (892)
+ |. .+++|+.|++++|.+++ +| ..+++|+.|++++|++++ +|.. +++|+.|++++|.++ .+|..
T Consensus 156 l--~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~-- 219 (622)
T 3g06_A 156 L--PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL-- 219 (622)
T ss_dssp C--CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC--
T ss_pred c--CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC--
Confidence 2 11 22445555555555543 33 234455555555555553 3321 245556666666554 22211
Q ss_pred CCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCC
Q 044158 644 NTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIR 723 (892)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 723 (892)
+++|+.|++++|++++ +| ..+++
T Consensus 220 -----------------------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l~~ 242 (622)
T 3g06_A 220 -----------------------------------------------------PSGLKELIVSGNRLTS-LP---VLPSE 242 (622)
T ss_dssp -----------------------------------------------------CTTCCEEECCSSCCSC-CC---CCCTT
T ss_pred -----------------------------------------------------CCCCCEEEccCCccCc-CC---CCCCc
Confidence 1235556666666664 44 33456
Q ss_pred CCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCcccc
Q 044158 724 IHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPERIA 791 (892)
Q Consensus 724 L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~~~ 791 (892)
|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|++++|+++|.+|..+.
T Consensus 243 L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 243 LKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred CcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 666666666666 3443 4566666777777666 5666666667777777777777666665433
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.5e-27 Score=254.64 Aligned_cols=203 Identities=20% Similarity=0.202 Sum_probs=100.4
Q ss_pred CCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCccc-cccccccc-------ccCCCcEEeecCccCcCCCCccc
Q 044158 426 DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQ-GQLFSKKI-------NLTKLKRLNLDGNHFIGGIPESL 497 (892)
Q Consensus 426 ~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~n~~~~~~~~~~ 497 (892)
..++|+.|++++|.+ .+|..+... |+.|++++|.+. ..++..+. ++++|++|++++|++++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 344555555555555 455544322 555555555552 23333332 46666666666666666666554
Q ss_pred --ccCCCCcEEEccCCcCCCCccccccCC-----CCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCC-ccccc
Q 044158 498 --SNCSSLQGLYISDNDISGSIPTWMGNI-----SFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR-PLNGA 569 (892)
Q Consensus 498 --~~l~~L~~L~L~~n~l~~~~~~~~~~~-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~ 569 (892)
..+++|++|++++|++++. |..+..+ ++|++|++++|++++..|..|+.+++|++|++++|++.+. ..+..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 6666677777777666655 5544444 4555555555555554445555555555555555554431 01112
Q ss_pred c--cCCCCccEEEccCCccCcc--CC-hhhhcCCCCCEEecccccccccCC-ccccCCCCCCEEEcCCCcC
Q 044158 570 F--SKCSYLLTLDLCNNRLNGN--IP-NWMGRLSQLRYLILANNNFEGEVP-LRLCQLQKLRLLDLSHNNF 634 (892)
Q Consensus 570 ~--~~~~~L~~L~L~~n~l~~~--~p-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l 634 (892)
+ ..+++|++|++++|++++. ++ ..+..+++|++|++++|++++..| ..+..+++|++|++++|++
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l 265 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc
Confidence 2 4445555555555554421 11 122334444444444444443332 2222334444444444443
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.7e-25 Score=257.75 Aligned_cols=268 Identities=26% Similarity=0.305 Sum_probs=188.6
Q ss_pred CccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEE
Q 044158 380 NIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLL 459 (892)
Q Consensus 380 ~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~ 459 (892)
+++.|++++|.++ .+|..++ ++|++|++++|.++. +|. .+++|++|++++|+++ .+|. .+++|++|+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP---AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 107 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC---TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred CCcEEEecCCCcC-ccChhhC---CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence 5899999999999 8887664 799999999999984 555 5789999999999998 7886 578999999
Q ss_pred ccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccC
Q 044158 460 LSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEG 539 (892)
Q Consensus 460 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~ 539 (892)
+++|.+++... .+++|+.|++++|++++ +|.. +++|++|++++|++++. |. .+++|+.|++++|.+++
T Consensus 108 Ls~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC
Confidence 99999997543 57899999999999985 5553 48999999999999853 32 23456666666666553
Q ss_pred CCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcccc
Q 044158 540 PIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLC 619 (892)
Q Consensus 540 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 619 (892)
+| ..+++|+.|++++|.+++ +|.. +++|+.|++++|.++ .+|..
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~~--------------------------l~~~---~~~L~~L~L~~N~l~-~l~~~-- 219 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLAS--------------------------LPTL---PSELYKLWAYNNRLT-SLPAL-- 219 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSC--------------------------CCCC---CTTCCEEECCSSCCS-SCCCC--
T ss_pred -Cc---ccCCCCcEEECCCCCCCC--------------------------CCCc---cchhhEEECcCCccc-ccCCC--
Confidence 23 233455555555555543 2211 234555555555554 23321
Q ss_pred CCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCc
Q 044158 620 QLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLES 699 (892)
Q Consensus 620 ~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 699 (892)
+++|+.|++++|++++ +|.. +++
T Consensus 220 -~~~L~~L~Ls~N~L~~-lp~~-------------------------------------------------------l~~ 242 (622)
T 3g06_A 220 -PSGLKELIVSGNRLTS-LPVL-------------------------------------------------------PSE 242 (622)
T ss_dssp -CTTCCEEECCSSCCSC-CCCC-------------------------------------------------------CTT
T ss_pred -CCCCCEEEccCCccCc-CCCC-------------------------------------------------------CCc
Confidence 3556666666666653 3310 124
Q ss_pred cceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCC
Q 044158 700 IHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELN 770 (892)
Q Consensus 700 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~ 770 (892)
|+.|++++|.++ .+|. .+++|+.|+|++|+|+ .+|..+.++++|+.|+|++|.+++.+|..+..++
T Consensus 243 L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 243 LKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 666777777776 3554 4567888888888887 6677788888888888888888887777766554
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=4e-27 Score=251.88 Aligned_cols=238 Identities=21% Similarity=0.170 Sum_probs=172.0
Q ss_pred ccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEc
Q 044158 381 IIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLL 460 (892)
Q Consensus 381 L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L 460 (892)
++..+++.+.+. ..+..++..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 12 l~i~~ls~~~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~L 87 (317)
T 3o53_A 12 YKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDL 87 (317)
T ss_dssp EEEESCCTTTHH-HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEEC
T ss_pred eeEeeccccchh-hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEEC
Confidence 445666666665 4555566556788888888888888777888888888888888888874443 457888888888
Q ss_pred cCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCC
Q 044158 461 SNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGP 540 (892)
Q Consensus 461 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 540 (892)
++|.+++.. ..++|++|++++|++.+..+. .+++|++|++++|++++..+..+..+++|+.|++++|.+++.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 888877543 247888888888887765443 356788888888888877777777777888888888887766
Q ss_pred Cccccc-CCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcccc
Q 044158 541 IPSEFC-QLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLC 619 (892)
Q Consensus 541 ~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 619 (892)
.+..+. .+++|++|++++|.++++ + ....+++|++|++++|++++ +|..+..+++|++|++++|+++ .+|..+.
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~--~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~ 234 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV--K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALR 234 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE--E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc--c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhh
Confidence 666553 577788888888877753 2 23346777777777777774 3444667777777777777777 4566677
Q ss_pred CCCCCCEEEcCCCcCC
Q 044158 620 QLQKLRLLDLSHNNFS 635 (892)
Q Consensus 620 ~l~~L~~L~Ls~N~l~ 635 (892)
.+++|+.|++++|+++
T Consensus 235 ~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 235 FSQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCTTCCEEECTTCCCB
T ss_pred cCCCCCEEEccCCCcc
Confidence 7777777777777766
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=5.8e-27 Score=265.19 Aligned_cols=148 Identities=22% Similarity=0.200 Sum_probs=74.6
Q ss_pred CCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeC
Q 044158 477 TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDL 556 (892)
Q Consensus 477 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 556 (892)
++|+.|+|++|.+.+..|..|..+++|++|+|++|.+++..| +..+++|+.|++++|.+++..+ .++|++|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 355555555555555555555555555555555555554333 5555555555555555543221 145555555
Q ss_pred CCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcccc-CCCCCCEEEcCCCcCC
Q 044158 557 SKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLC-QLQKLRLLDLSHNNFS 635 (892)
Q Consensus 557 s~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~Ls~N~l~ 635 (892)
++|.+++.+ + ..+++|+.|++++|.+++..|..++.+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.++
T Consensus 107 ~~N~l~~~~-~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~ 182 (487)
T 3oja_A 107 ANNNISRVS-C---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182 (487)
T ss_dssp CSSCCCCEE-E---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC
T ss_pred cCCcCCCCC-c---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc
Confidence 555555421 1 1234455555555555544444445555555555555555544444443 4455555555555444
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=2.4e-27 Score=253.02 Aligned_cols=248 Identities=22% Similarity=0.191 Sum_probs=190.2
Q ss_pred CCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCC-ccCchhcc-------CCCCCcEEECcCCcCccccchhHh
Q 044158 378 RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFN-GSIPSSFG-------DMNSLIYLDLSNNQLTGEIPEHLA 449 (892)
Q Consensus 378 ~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~i~~~~~ 449 (892)
.++|+.|++++|.+ .+|..+... |+.|++++|.+. ..+|..+. ++++|++|++++|++++.+|..++
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 34566777777777 667666552 777788887773 34555554 677888888888888777777653
Q ss_pred -hcCccCcEEEccCCccccccccccccc-----CCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCC--ccccc
Q 044158 450 -MGCFNLEYLLLSNNSLQGQLFSKKINL-----TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGS--IPTWM 521 (892)
Q Consensus 450 -~~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~ 521 (892)
..+++|++|++++|++++. |..+..+ ++|++|++++|++.+..|..|..+++|++|++++|++.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 5677888888888888776 6666666 8888888888888877778888888888888888887654 23334
Q ss_pred --cCCCCCcEEECCCCcccC--CCc-ccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhc
Q 044158 522 --GNISFLDAIIMPDNHLEG--PIP-SEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGR 596 (892)
Q Consensus 522 --~~~~~L~~L~L~~n~l~~--~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~ 596 (892)
..+++|++|++++|++++ .++ ..+..+++|++|++++|++++......+..+++|++|++++|+++ .+|..+.
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~- 273 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP- 273 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC-
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc-
Confidence 788889999999998873 222 344678899999999999987432245667889999999999998 6777665
Q ss_pred CCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCC
Q 044158 597 LSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSG 636 (892)
Q Consensus 597 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g 636 (892)
++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 274 -~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 -AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp -SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred -CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 8899999999999865 65 8899999999999999875
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2e-29 Score=296.06 Aligned_cols=243 Identities=19% Similarity=0.171 Sum_probs=138.2
Q ss_pred CCcccceeEecCCCCcEEEEEcCCCccccccccCcccCCCCCCCcEEeCCCCccCCcccc--c--------ccc-ccCCC
Q 044158 8 DCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVEN--E--------GLE-KLSGL 76 (892)
Q Consensus 8 ~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~s~f~~~~~L~~L~Ls~n~i~~~~~~--~--------~~~-~~~~l 76 (892)
-|++|.++.. .....+++...... .....+..+++|++|+++++........ . .+. ....+
T Consensus 33 vck~W~~~~~----~~~~~l~~~~~~~~----~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~ 104 (594)
T 2p1m_B 33 VCKSWYEIER----WCRRKVFIGNCYAV----SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY 104 (594)
T ss_dssp SCHHHHHHHH----HHCCEEEESSTTSS----CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC
T ss_pred HHHHHHHhhh----hhceEEeecccccc----CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhC
Confidence 4678999832 23445566533111 1234567789999999998753211100 0 001 12367
Q ss_pred CCCCEEeCCCCCCCCccccccc-CCCCCCEEecCCc-ccccCCChhhhcCCCCCCEEeCCCCCCCCccc---cccccCCC
Q 044158 77 SNLKFLDLSHNSFNNSVLSSLA-GLSSLKNLSLAYN-RLEGSINIEELDSLSNLEGLDMSDNEIDNLVV---PKDYRGLR 151 (892)
Q Consensus 77 ~~L~~L~Ls~n~i~~~~~~~l~-~l~~L~~L~Ls~n-~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~---~~~~~~l~ 151 (892)
++|++|+|++|.+++..+..+. .+++|++|++++| .++.......+.++++|++|++++|.+++..+ ......++
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 8899999999888877666675 6889999999888 44321112234578888888888888765432 22234667
Q ss_pred CCcEEeCCCCc--CCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCc-------CccCcccc
Q 044158 152 KLRFLDLSGLR--IRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHND-------FIGSLPWC 222 (892)
Q Consensus 152 ~L~~L~L~~n~--i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~~ 222 (892)
+|++|+++++. +... .+...+..+++|++|++++|...+..+. .+..+++|++|+++.+. +.+ ++..
T Consensus 185 ~L~~L~l~~~~~~~~~~-~l~~l~~~~~~L~~L~L~~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~ 260 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFS-ALERLVTRCPNLKSLKLNRAVPLEKLAT--LLQRAPQLEELGTGGYTAEVRPDVYSG-LSVA 260 (594)
T ss_dssp CCCEEECTTCCSCCCHH-HHHHHHHHCTTCCEEECCTTSCHHHHHH--HHHHCTTCSEEECSBCCCCCCHHHHHH-HHHH
T ss_pred cCcEEEecccCCcCCHH-HHHHHHHhCCCCcEEecCCCCcHHHHHH--HHhcCCcceEcccccccCccchhhHHH-HHHH
Confidence 88888888776 2111 1222234567777777777732222222 45566777777755442 222 2335
Q ss_pred ccCCCCCcEE-eCCCCCcccccCCCcccccccCcEEeccCccc
Q 044158 223 LANLTSLRVL-HVPDNQLTENLSSSPLMHLTSIELLILSNNHF 264 (892)
Q Consensus 223 l~~l~~L~~L-~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l 264 (892)
+.++++|+.| .+.+... +.+ +..+..+++|++|++++|.+
T Consensus 261 l~~~~~L~~Ls~~~~~~~-~~l-~~~~~~~~~L~~L~L~~~~l 301 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-AYL-PAVYSVCSRLTTLNLSYATV 301 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-GGG-GGGHHHHTTCCEEECTTCCC
T ss_pred HhcCCCcccccCCcccch-hhH-HHHHHhhCCCCEEEccCCCC
Confidence 6666777766 3332221 111 22233456666666666653
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=4e-28 Score=284.90 Aligned_cols=407 Identities=16% Similarity=0.114 Sum_probs=267.7
Q ss_pred cccCCCCccEEEccCCcCccccc--------------hhhhhcCCCCCEEEccCCcCcCCCCCCCC-CCCCccEEEccCC
Q 044158 325 FLYHQHHLEFVIISDVNMRGEFP--------------SWLLENNTNLRSIILANNSLSGPFRLPTR-SRKNIIALDISYN 389 (892)
Q Consensus 325 ~l~~~~~L~~L~l~~~~~~~~~p--------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~l~~n 389 (892)
.+..+++|++|+++++.....+. ..+...+++|++|++++|.+++.....+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 34456677777777765332221 22345678888888888877654333333 5778888888888
Q ss_pred -cCCCCCchhhhhcCCCCcEEECcCCcCCccCchhcc----CCCCCcEEECcCCc--CccccchhHhhcCccCcEEEccC
Q 044158 390 -KLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFG----DMNSLIYLDLSNNQ--LTGEIPEHLAMGCFNLEYLLLSN 462 (892)
Q Consensus 390 -~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~----~l~~L~~L~L~~n~--l~~~i~~~~~~~~~~L~~L~L~~ 462 (892)
.+++.....+...+++|++|++++|.+++..+..+. .+++|++|++++|. +.......+...+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 454322333444588999999999887765544443 66789999999886 32222223334578899999988
Q ss_pred CcccccccccccccCCCcEEeecCcc-------CcCCCCcccccCCCCcEE-EccCCcCCCCccccccCCCCCcEEECCC
Q 044158 463 NSLQGQLFSKKINLTKLKRLNLDGNH-------FIGGIPESLSNCSSLQGL-YISDNDISGSIPTWMGNISFLDAIIMPD 534 (892)
Q Consensus 463 n~l~~~~~~~~~~l~~L~~L~L~~n~-------~~~~~~~~~~~l~~L~~L-~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 534 (892)
|...+.++..+..+++|+.|++..+. +.+ ++..+.++++|+.| .+.+... +.++..+..+++|+.|++++
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~ 298 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY 298 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence 83333367777888899999866543 222 33467888888888 4443322 23455555778899999999
Q ss_pred CcccCCCcc-cccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccC---------CccCccCChhh-hcCCCCCEE
Q 044158 535 NHLEGPIPS-EFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCN---------NRLNGNIPNWM-GRLSQLRYL 603 (892)
Q Consensus 535 n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~---------n~l~~~~p~~~-~~l~~L~~L 603 (892)
|.+++.... .+..+++|++|++++| ++...++.....+++|++|++++ +.+++.....+ ..+++|+.|
T Consensus 299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L 377 (594)
T 2p1m_B 299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377 (594)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH
Confidence 887643322 3567889999999888 44323333444688899998843 44543333333 348899999
Q ss_pred ecccccccccCCcccc-CCCCCCEEEcC--C----CcCCCCCCc--cccCCcccccccccccccccccccccccccCCCC
Q 044158 604 ILANNNFEGEVPLRLC-QLQKLRLLDLS--H----NNFSGQIPP--CLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPS 674 (892)
Q Consensus 604 ~L~~n~l~~~~~~~~~-~l~~L~~L~Ls--~----N~l~g~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (892)
.++.|.+++..+..+. .+++|+.|+++ + |.+++ .|. .+...
T Consensus 378 ~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~~~~~~l----------------------------- 427 (594)
T 2p1m_B 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL-EPLDIGFGAI----------------------------- 427 (594)
T ss_dssp EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC-CCTHHHHHHH-----------------------------
T ss_pred HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC-CchhhHHHHH-----------------------------
Confidence 8888888876655555 58889999998 3 33331 110 00000
Q ss_pred CCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccc-cCCCCEEEccCccCCccccccc-cCCCCCCEEE
Q 044158 675 MGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGE-LIRIHTLNLSRNNLTGTIPVTF-SNLRQVESLD 752 (892)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~Ld 752 (892)
...+++|+.|++++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..+++|+.|+
T Consensus 428 -------------------~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 428 -------------------VEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487 (594)
T ss_dssp -------------------HHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred -------------------HhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence 01234688899977 777666666665 7889999999999887666555 5688999999
Q ss_pred CCCCcCcccCCc-cccCCCCCCEEEccCCcccc
Q 044158 753 LSYNNLTGKIPP-RLVELNALAVFTVAHNNLSG 784 (892)
Q Consensus 753 Ls~N~l~g~ip~-~l~~l~~L~~l~ls~N~l~g 784 (892)
|++|.+++..+. ....+++|+.|++++|+++.
T Consensus 488 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 488 IRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp EESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 999998755443 33457889999999998743
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.6e-26 Score=259.83 Aligned_cols=246 Identities=21% Similarity=0.193 Sum_probs=161.9
Q ss_pred CCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEE
Q 044158 500 CSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTL 579 (892)
Q Consensus 500 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L 579 (892)
+++|++|+|++|.+++..|..+..+++|+.|+|++|.+++..| +..+++|++|+|++|.+++++ ..++|++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~------~~~~L~~L 104 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL------VGPSIETL 104 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE------ECTTCCEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC------CCCCcCEE
Confidence 3467777777777777666777777777777777777766544 677777777777777776522 22677777
Q ss_pred EccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccc
Q 044158 580 DLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPT 659 (892)
Q Consensus 580 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~ 659 (892)
++++|.+++..+. .+++|+.|++++|.+++..|..+..+++|++|+|++|++++.+|..+..
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~--------------- 166 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA--------------- 166 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG---------------
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh---------------
Confidence 7777777765443 3467777777777777766777777777777777777777655544321
Q ss_pred cccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCcccc
Q 044158 660 YRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIP 739 (892)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 739 (892)
.++.|+.|+|++|.+++..+ ...+++|+.|+|++|.+++.+|
T Consensus 167 ------------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~ 208 (487)
T 3oja_A 167 ------------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP 208 (487)
T ss_dssp ------------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG
T ss_pred ------------------------------------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH
Confidence 12357777777777775522 3346777777777777775444
Q ss_pred ccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCccc-ccCCccccccCCCCcccc-------cCCCCCCCCC
Q 044158 740 VTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLS-GKIPERIAQFATFDEDSY-------EGNPFLCGPP 811 (892)
Q Consensus 740 ~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~-g~ip~~~~~~~~~~~~~~-------~gN~~lc~~~ 811 (892)
.++.+++|+.|||++|++++ +|..+..++.|+.|++++|++. +.+|..+..+..+..... .+|++.|.++
T Consensus 209 -~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 209 -EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp -GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred -hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEeccccccccCCCcccccCC
Confidence 47777777777777777774 5666777777777777777776 444443333333322222 2677777664
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=4.8e-24 Score=223.45 Aligned_cols=209 Identities=24% Similarity=0.289 Sum_probs=133.6
Q ss_pred CCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEec
Q 044158 526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLIL 605 (892)
Q Consensus 526 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 605 (892)
++++|++++|++++..+..|.++++|++|++++|++++ ..+..|..+++|++|++++|++++..+..+.++++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE-ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc-cCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 34444444444444444445555555555555555554 22334555566666666666666555555666666666666
Q ss_pred ccccccccCCccccCCCCCCEEEcCCCcCCC-CCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEee
Q 044158 606 ANNNFEGEVPLRLCQLQKLRLLDLSHNNFSG-QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFT 684 (892)
Q Consensus 606 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (892)
++|++.+..+..+..+++|++|++++|++++ .+|..+..
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~---------------------------------------- 147 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN---------------------------------------- 147 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG----------------------------------------
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc----------------------------------------
Confidence 6666665555456666666666666666654 23443332
Q ss_pred ecccccccCCCCcCccceeeccCccccccCCccccccCCCC----EEEccCccCCccccccccCCCCCCEEECCCCcCcc
Q 044158 685 TKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIH----TLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG 760 (892)
Q Consensus 685 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g 760 (892)
+++|+.|++++|++++..+..+..+.+|+ .|++++|++++..+..+.. .+|+.|++++|++++
T Consensus 148 ------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~ 214 (276)
T 2z62_A 148 ------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKS 214 (276)
T ss_dssp ------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSC
T ss_pred ------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceee
Confidence 22466677777777666666666666666 7888888888666555544 478999999999987
Q ss_pred cCCccccCCCCCCEEEccCCcccccCCc
Q 044158 761 KIPPRLVELNALAVFTVAHNNLSGKIPE 788 (892)
Q Consensus 761 ~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 788 (892)
..+..+..+++|+.|++++|++++..|.
T Consensus 215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 215 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp CCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred cCHhHhcccccccEEEccCCcccccCCc
Confidence 7666778889999999999999888775
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.5e-23 Score=215.80 Aligned_cols=218 Identities=22% Similarity=0.364 Sum_probs=112.2
Q ss_pred CCCcccceeEecCCCCcEEEEEcCCCccccccccCcccCCCCCCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCC
Q 044158 7 SDCCQWQSVLCNATTSRVIAIDLLSLNIASALYLNFSLFTPFQQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSH 86 (892)
Q Consensus 7 ~~~c~w~gv~c~~~~~~v~~l~L~~~~~~~~~~~~~s~f~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~ 86 (892)
.|+|.|.|+.|.- .+.++.++++++.+.. ++... .+++++|+|++|.+++... ..|.++++|++|+|++
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~---ip~~~---~~~l~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~ 70 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTA---IPSNI---PADTKKLDLQSNKLSSLPS----KAFHRLTKLRLLYLND 70 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCSS---CCSCC---CTTCSEEECCSSCCSCCCT----TSSSSCTTCCEEECCS
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCCc---cCCCC---CCCCCEEECcCCCCCeeCH----HHhcCCCCCCEEECCC
Confidence 4799999999964 2345566776654432 11111 1345555555555554332 2345555555555555
Q ss_pred CCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCC
Q 044158 87 NSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDG 166 (892)
Q Consensus 87 n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~ 166 (892)
|.++...+..|.++++|++|++++|.+. .++...+..+++|++|++++|.+++.. +..|.++++|++|++++|.++.
T Consensus 71 n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~- 147 (270)
T 2o6q_A 71 NKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLP-PRVFDSLTKLTYLSLGYNELQS- 147 (270)
T ss_dssp SCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCC-
T ss_pred CccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeC-HHHhCcCcCCCEEECCCCcCCc-
Confidence 5555444444455555555555555554 344434455555555555555555443 2224455555555555554443
Q ss_pred ccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEccCCcCccCccccccCCCCCcEEeCCCCCcccccCCC
Q 044158 167 SKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYIDHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSS 246 (892)
Q Consensus 167 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 246 (892)
..+. .+..+++|++|++++|.+++..+..+.++++|++|++++|++++ +.+.
T Consensus 148 -------------------------~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~ 199 (270)
T 2o6q_A 148 -------------------------LPKG--VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VPEG 199 (270)
T ss_dssp -------------------------CCTT--TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-CCTT
T ss_pred -------------------------cCHh--HccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-CCHH
Confidence 3222 34445555555555555554444445555555555555555543 2233
Q ss_pred cccccccCcEEeccCccccC
Q 044158 247 PLMHLTSIELLILSNNHFQI 266 (892)
Q Consensus 247 ~l~~l~~L~~L~L~~n~l~~ 266 (892)
.+..+++|+.|++++|.+.+
T Consensus 200 ~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTCTTCCEEECCSSCBCC
T ss_pred HhccccCCCEEEecCCCeeC
Confidence 44555555555555555543
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=2.6e-23 Score=218.42 Aligned_cols=205 Identities=23% Similarity=0.245 Sum_probs=120.1
Q ss_pred ccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCC
Q 044158 521 MGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQL 600 (892)
Q Consensus 521 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L 600 (892)
+.++++++.++++++.++ .+|..+. ++++.|++++|.+++ ..+..|..+++|++|++++|.+++..+. +.+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSE-EEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCc-cCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 445566666666666666 3444332 456666666666665 2345566666666666666666643332 456666
Q ss_pred CEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcce
Q 044158 601 RYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKET 680 (892)
Q Consensus 601 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (892)
++|++++|+++ .+|..+..+++|++|++++|++++..|..+..
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~------------------------------------ 122 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG------------------------------------ 122 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT------------------------------------
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC------------------------------------
Confidence 66666666665 45555666666666666666665333333322
Q ss_pred eEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcc
Q 044158 681 IDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG 760 (892)
Q Consensus 681 ~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g 760 (892)
+++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++
T Consensus 123 ----------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~- 185 (290)
T 1p9a_G 123 ----------------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY- 185 (290)
T ss_dssp ----------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-
T ss_pred ----------------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-
Confidence 224566666666666555555566666666666666666544445556666666666666666
Q ss_pred cCCccccCCCCCCEEEccCCccccc
Q 044158 761 KIPPRLVELNALAVFTVAHNNLSGK 785 (892)
Q Consensus 761 ~ip~~l~~l~~L~~l~ls~N~l~g~ 785 (892)
.+|..+.....|+.+++++|++.+.
T Consensus 186 ~ip~~~~~~~~L~~l~L~~Np~~C~ 210 (290)
T 1p9a_G 186 TIPKGFFGSHLLPFAFLHGNPWLCN 210 (290)
T ss_dssp CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ccChhhcccccCCeEEeCCCCccCc
Confidence 5555555556666666666666543
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=6.6e-23 Score=213.73 Aligned_cols=207 Identities=23% Similarity=0.265 Sum_probs=167.7
Q ss_pred CCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEec
Q 044158 526 FLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLIL 605 (892)
Q Consensus 526 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 605 (892)
..+.+++++++++ .+|..+. +++++|++++|++++++ +..|.++++|++|++++|+++...+..+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCC-TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeC-HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 4678999999988 4665554 57899999999988733 557888999999999999998666667788899999999
Q ss_pred ccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeee
Q 044158 606 ANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTT 685 (892)
Q Consensus 606 ~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 685 (892)
++|++++..+..+..+++|++|++++|++++..|..+..
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------------- 131 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS----------------------------------------- 131 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-----------------------------------------
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-----------------------------------------
Confidence 999998766677788899999999999888554443332
Q ss_pred cccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCcc
Q 044158 686 KERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPR 765 (892)
Q Consensus 686 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~ 765 (892)
+++|+.|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..
T Consensus 132 -----------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 200 (270)
T 2o6q_A 132 -----------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA 200 (270)
T ss_dssp -----------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred -----------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH
Confidence 336888999999988766666888899999999999998877777888899999999999998776777
Q ss_pred ccCCCCCCEEEccCCcccccCCc
Q 044158 766 LVELNALAVFTVAHNNLSGKIPE 788 (892)
Q Consensus 766 l~~l~~L~~l~ls~N~l~g~ip~ 788 (892)
+..+++|+.|++++|++.+..+.
T Consensus 201 ~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTCTTCCEEECCSSCBCCSSSS
T ss_pred hccccCCCEEEecCCCeeCCCcc
Confidence 88888899999999988876653
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=3.5e-23 Score=216.81 Aligned_cols=228 Identities=21% Similarity=0.227 Sum_probs=126.5
Q ss_pred EEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCC
Q 044158 384 LDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNN 463 (892)
Q Consensus 384 L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n 463 (892)
++..+..++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|+++ .++...+.++++|++|++++|
T Consensus 12 ~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 12 YQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTC
T ss_pred EEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCC
Confidence 344444444 555543 346777777777777666656777777777777777766 444444455666666666666
Q ss_pred cccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCC-ccccccCCCCCcEEECCCCcccCCCc
Q 044158 464 SLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGS-IPTWMGNISFLDAIIMPDNHLEGPIP 542 (892)
Q Consensus 464 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~ 542 (892)
.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|++++. +|..+..+++|+.|++++|++++..+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~ 166 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCH
Confidence 66655555556666666666666665554444555555666666665555542 34444444444444444444444333
Q ss_pred ccccCCCCCcEEeCCCCccCCCcccccccCCCCcc-EEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCC
Q 044158 543 SEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLL-TLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQL 621 (892)
Q Consensus 543 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 621 (892)
..+..+++|+ .|. +|++++|++++..+..+. ..+|+.|++++|++++..+..+..+
T Consensus 167 ~~~~~l~~L~----------------------~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l 223 (276)
T 2z62_A 167 TDLRVLHQMP----------------------LLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRL 223 (276)
T ss_dssp GGGHHHHTCT----------------------TCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTC
T ss_pred HHhhhhhhcc----------------------ccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhccc
Confidence 3333332222 111 556666665544333332 2356666666666665444445666
Q ss_pred CCCCEEEcCCCcCCCCCC
Q 044158 622 QKLRLLDLSHNNFSGQIP 639 (892)
Q Consensus 622 ~~L~~L~Ls~N~l~g~~p 639 (892)
++|+.|++++|++++..|
T Consensus 224 ~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 224 TSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CSCCEEECCSSCBCCCTT
T ss_pred ccccEEEccCCcccccCC
Confidence 666666666666665443
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=2.8e-23 Score=216.71 Aligned_cols=186 Identities=23% Similarity=0.274 Sum_probs=139.8
Q ss_pred ccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCC
Q 044158 545 FCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKL 624 (892)
Q Consensus 545 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 624 (892)
+..+++|++|++++|.++++ ..+..+++|++|++++|.+++..+..++.+++|++|++++|++++..+..+..+++|
T Consensus 59 l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC---GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cccCCCCcEEECCCCCCCCc---hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence 45566666666666666652 256666777777777777776666666777777777777777776666667777777
Q ss_pred CEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceee
Q 044158 625 RLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLD 704 (892)
Q Consensus 625 ~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~ 704 (892)
++|++++|++++..|..+.. +++|+.|+
T Consensus 136 ~~L~L~~n~l~~~~~~~~~~----------------------------------------------------l~~L~~L~ 163 (272)
T 3rfs_A 136 TYLNLAHNQLQSLPKGVFDK----------------------------------------------------LTNLTELD 163 (272)
T ss_dssp CEEECCSSCCCCCCTTTTTT----------------------------------------------------CTTCCEEE
T ss_pred CEEECCCCccCccCHHHhcc----------------------------------------------------CccCCEEE
Confidence 77777777777444433322 23577788
Q ss_pred ccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccc
Q 044158 705 LSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSG 784 (892)
Q Consensus 705 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 784 (892)
+++|++++..|..++.+++|+.|++++|++++.+|..++.+++|+.|++++|.+++..| .|+.++++.|.++|
T Consensus 164 l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-------~l~~l~~~~n~~~g 236 (272)
T 3rfs_A 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-------GIRYLSEWINKHSG 236 (272)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT-------TTHHHHHHHHHTGG
T ss_pred CCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc-------HHHHHHHHHHhCCC
Confidence 88888887777778889999999999999999888889999999999999999987654 68899999999999
Q ss_pred cCCccccc
Q 044158 785 KIPERIAQ 792 (892)
Q Consensus 785 ~ip~~~~~ 792 (892)
.+|..++.
T Consensus 237 ~ip~~~~~ 244 (272)
T 3rfs_A 237 VVRNSAGS 244 (272)
T ss_dssp GBBCTTSC
T ss_pred cccCcccc
Confidence 99985443
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.5e-23 Score=214.47 Aligned_cols=225 Identities=22% Similarity=0.268 Sum_probs=122.7
Q ss_pred CCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEee
Q 044158 405 NLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNL 484 (892)
Q Consensus 405 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 484 (892)
.+..+++..+.+.+. ..+..+++|+.|++++|.+. .++. +..+++|++|++++|.+++. ..+..+++|++|++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L 92 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLIL 92 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEEC
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEEC
Confidence 444555556555433 23445667777777777665 4443 23466666666666666542 34555666666666
Q ss_pred cCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCC
Q 044158 485 DGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR 564 (892)
Q Consensus 485 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 564 (892)
++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~- 171 (272)
T 3rfs_A 93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS- 171 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-
Confidence 6666665555555566666666666666655555555555555555555555554444445555555555555555554
Q ss_pred cccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccC
Q 044158 565 PLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDN 644 (892)
Q Consensus 565 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~ 644 (892)
..+..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+. +++|+.++++.|+++|.+|.+++.
T Consensus 172 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 172 LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccc
Confidence 2233345555555555555555554444455555555555555554422 334455555555555555544443
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=5.3e-22 Score=208.50 Aligned_cols=203 Identities=23% Similarity=0.227 Sum_probs=156.3
Q ss_pred ccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCC
Q 044158 424 FGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSL 503 (892)
Q Consensus 424 ~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L 503 (892)
++++++++++++++++++ .+|..+ .++++.|++++|.+++..+..|..+++|+.|++++|.+++..+ ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 455666777777777666 566544 2467777777777776666777777777777777777765332 2667788
Q ss_pred cEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccC
Q 044158 504 QGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCN 583 (892)
Q Consensus 504 ~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~ 583 (892)
++|++++|+++ .+|..+..+++|+.|++++|++++..+..|..+++|++|++++|+++++ .+..|..+++|+.|++++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL-PPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc-ChhhcccccCCCEEECCC
Confidence 88888888877 5666777788888888888888877777788888888888888888873 356678888999999999
Q ss_pred CccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158 584 NRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635 (892)
Q Consensus 584 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 635 (892)
|++++..+..+..+++|++|++++|+++ .+|..+...++|+.|+|++|++.
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 9988666667788899999999999998 67888888889999999999886
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.7e-23 Score=228.22 Aligned_cols=20 Identities=5% Similarity=0.174 Sum_probs=10.1
Q ss_pred ccccCCCCEEEccCccCCcc
Q 044158 718 IGELIRIHTLNLSRNNLTGT 737 (892)
Q Consensus 718 ~~~l~~L~~L~Ls~N~l~~~ 737 (892)
+..+++|+.||+++|++.+.
T Consensus 280 ~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 280 FPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp STTCCEEEEECTTSCBCCGG
T ss_pred hccCCceEEEecCCCcCCCc
Confidence 34444555555555555444
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=5e-24 Score=235.00 Aligned_cols=240 Identities=20% Similarity=0.239 Sum_probs=158.9
Q ss_pred ccccCCCCcEEEccCCcCCCCcc----ccccCCCCCcEEECCCC---cccCCCcccc-------cCCCCCcEEeCCCCcc
Q 044158 496 SLSNCSSLQGLYISDNDISGSIP----TWMGNISFLDAIIMPDN---HLEGPIPSEF-------CQLDYLEILDLSKNNI 561 (892)
Q Consensus 496 ~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~L~~n---~l~~~~~~~~-------~~l~~L~~L~Ls~n~l 561 (892)
.+..+++|++|++++|.+++..+ ..+..+++|+.|+|++| ++++.+|..+ ..+++|++|+|++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 33444444444444444443211 22334444445544443 2333344333 5667777777777777
Q ss_pred CCC---cccccccCCCCccEEEccCCccCccCChhhh----cC---------CCCCEEeccccccc-ccCC---ccccCC
Q 044158 562 AGR---PLNGAFSKCSYLLTLDLCNNRLNGNIPNWMG----RL---------SQLRYLILANNNFE-GEVP---LRLCQL 621 (892)
Q Consensus 562 ~~~---~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~----~l---------~~L~~L~L~~n~l~-~~~~---~~~~~l 621 (892)
++. .++..+..+++|++|+|++|.+++..+..+. .+ ++|++|++++|+++ +.++ ..+..+
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~ 186 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH 186 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence 652 2455667777778888877777644333333 33 78888888888876 3344 356677
Q ss_pred CCCCEEEcCCCcCCC-----CCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCC
Q 044158 622 QKLRLLDLSHNNFSG-----QIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQP 696 (892)
Q Consensus 622 ~~L~~L~Ls~N~l~g-----~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 696 (892)
++|++|++++|+++. .+|..+. .
T Consensus 187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~----------------------------------------------------~ 214 (386)
T 2ca6_A 187 RLLHTVKMVQNGIRPEGIEHLLLEGLA----------------------------------------------------Y 214 (386)
T ss_dssp TTCCEEECCSSCCCHHHHHHHHHTTGG----------------------------------------------------G
T ss_pred CCcCEEECcCCCCCHhHHHHHHHHHhh----------------------------------------------------c
Confidence 888888888887751 1111111 2
Q ss_pred cCccceeeccCcccc----ccCCccccccCCCCEEEccCccCCcc----ccccc--cCCCCCCEEECCCCcCcc----cC
Q 044158 697 LESIHGLDLSCNKLI----GEIPSRIGELIRIHTLNLSRNNLTGT----IPVTF--SNLRQVESLDLSYNNLTG----KI 762 (892)
Q Consensus 697 l~~L~~L~Ls~N~l~----~~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~~--~~l~~L~~LdLs~N~l~g----~i 762 (892)
+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. +|..+ +.+++|+.|+|++|++++ .+
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 346888888888886 56788888999999999999999876 56666 348999999999999998 58
Q ss_pred Cccc-cCCCCCCEEEccCCcccccCC
Q 044158 763 PPRL-VELNALAVFTVAHNNLSGKIP 787 (892)
Q Consensus 763 p~~l-~~l~~L~~l~ls~N~l~g~ip 787 (892)
|..+ .++++|++|++++|++++..|
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred HHHHHhcCCCceEEEccCCcCCcchh
Confidence 8877 668999999999999998775
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=8.8e-24 Score=230.51 Aligned_cols=178 Identities=19% Similarity=0.203 Sum_probs=109.2
Q ss_pred EEEccCCcccccccccccccCCCcEEeecCccCcCCCC----cccccCC-CCcEEEccCCcCCCCccccccCC-----CC
Q 044158 457 YLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIP----ESLSNCS-SLQGLYISDNDISGSIPTWMGNI-----SF 526 (892)
Q Consensus 457 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~-----~~ 526 (892)
.++++.|.+++.+|..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|++++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 45677788887777766666668888888888776655 5666777 78888888887776656555543 67
Q ss_pred CcEEECCCCcccCCCccccc----CC-CCCcEEeCCCCccCCCccccc----ccC-CCCccEEEccCCccCccC----Ch
Q 044158 527 LDAIIMPDNHLEGPIPSEFC----QL-DYLEILDLSKNNIAGRPLNGA----FSK-CSYLLTLDLCNNRLNGNI----PN 592 (892)
Q Consensus 527 L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~Ls~n~l~~~~~~~~----~~~-~~~L~~L~L~~n~l~~~~----p~ 592 (892)
|++|++++|.+++..+..+. .+ ++|++|++++|++++.. +.. +.. +++|++|++++|++++.. +.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~ 160 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKS-SSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ 160 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSC-HHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHH-HHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence 77777777777665555333 33 56677777777665522 212 222 346666666666666432 22
Q ss_pred hhhcCC-CCCEEecccccccccCCcccc----CC-CCCCEEEcCCCcCC
Q 044158 593 WMGRLS-QLRYLILANNNFEGEVPLRLC----QL-QKLRLLDLSHNNFS 635 (892)
Q Consensus 593 ~~~~l~-~L~~L~L~~n~l~~~~~~~~~----~l-~~L~~L~Ls~N~l~ 635 (892)
.+..++ +|++|+|++|++++..+..+. .+ ++|++|||++|+++
T Consensus 161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 161 ILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred HHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 333443 666666666666554443332 22 36666666666654
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=1.7e-22 Score=215.38 Aligned_cols=144 Identities=19% Similarity=0.199 Sum_probs=66.4
Q ss_pred CCCcEEeecCccCcCCCCccc--ccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEE
Q 044158 477 TKLKRLNLDGNHFIGGIPESL--SNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL 554 (892)
Q Consensus 477 ~~L~~L~L~~n~~~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 554 (892)
++|++|++++|.+.+..|..+ ..+++|++|++++|++++..+..- ...+..+++|++|
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~--------------------~~~~~~~~~L~~L 150 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLA--------------------ELQQWLKPGLKVL 150 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHH--------------------HHHTTBCSCCCEE
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhH--------------------HHHhhhccCCCEE
Confidence 445555555555555555554 555556666666665554322100 0111223333333
Q ss_pred eCCCCccCCCcccccccCCCCccEEEccCCccCcc---C-ChhhhcCCCCCEEecccccccccCCc----cccCCCCCCE
Q 044158 555 DLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGN---I-PNWMGRLSQLRYLILANNNFEGEVPL----RLCQLQKLRL 626 (892)
Q Consensus 555 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~---~-p~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~ 626 (892)
++++|++++ ..+..+..+++|++|++++|++.+. . +.+++.+++|++|++++|+++. ++. .+..+++|++
T Consensus 151 ~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~ 228 (310)
T 4glp_A 151 SIAQAHSPA-FSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHS 228 (310)
T ss_dssp EEECCSSCC-CCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSS
T ss_pred EeeCCCcch-hhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCE
Confidence 333333333 2223334444444444444443321 1 1123445556666666665541 222 1345566666
Q ss_pred EEcCCCcCCCCCCccc
Q 044158 627 LDLSHNNFSGQIPPCL 642 (892)
Q Consensus 627 L~Ls~N~l~g~~p~~~ 642 (892)
|||++|++++.+|..+
T Consensus 229 L~Ls~N~l~~~~p~~~ 244 (310)
T 4glp_A 229 LDLSHNSLRATVNPSA 244 (310)
T ss_dssp EECTTSCCCCCCCSCC
T ss_pred EECCCCCCCccchhhH
Confidence 6666666665555443
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=3e-23 Score=224.43 Aligned_cols=234 Identities=18% Similarity=0.180 Sum_probs=117.4
Q ss_pred CCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCC-ccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEe
Q 044158 477 TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGS-IPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILD 555 (892)
Q Consensus 477 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 555 (892)
++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 3444444444444443332 33445555555555554433 444444445555555555554444444555555555555
Q ss_pred CCCC-ccCCCcccccccCCCCccEEEccCC-ccCcc-CChhhhcCC-CCCEEeccccc--cc-ccCCccccCCCCCCEEE
Q 044158 556 LSKN-NIAGRPLNGAFSKCSYLLTLDLCNN-RLNGN-IPNWMGRLS-QLRYLILANNN--FE-GEVPLRLCQLQKLRLLD 628 (892)
Q Consensus 556 Ls~n-~l~~~~~~~~~~~~~~L~~L~L~~n-~l~~~-~p~~~~~l~-~L~~L~L~~n~--l~-~~~~~~~~~l~~L~~L~ 628 (892)
+++| .+++..++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|. ++ +.+|..+..+++|+.|+
T Consensus 149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 5555 3443223334445555555555555 44432 344444455 55555555552 22 22333334444444444
Q ss_pred cCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCc
Q 044158 629 LSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCN 708 (892)
Q Consensus 629 Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N 708 (892)
+++|.+
T Consensus 229 l~~~~~-------------------------------------------------------------------------- 234 (336)
T 2ast_B 229 LSDSVM-------------------------------------------------------------------------- 234 (336)
T ss_dssp CTTCTT--------------------------------------------------------------------------
T ss_pred CCCCCc--------------------------------------------------------------------------
Confidence 444431
Q ss_pred cccccCCccccccCCCCEEEccCcc-CCccccccccCCCCCCEEECCCCcCcccCCccccCC-CCCCEEEccCCcccccC
Q 044158 709 KLIGEIPSRIGELIRIHTLNLSRNN-LTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVEL-NALAVFTVAHNNLSGKI 786 (892)
Q Consensus 709 ~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l-~~L~~l~ls~N~l~g~i 786 (892)
+++..+..+..+++|+.|++++|. ++......++++++|+.|++++| ++.. .+..+ ..+..|++++|++++..
T Consensus 235 -l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 235 -LKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIA 309 (336)
T ss_dssp -CCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTT
T ss_pred -CCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHH---HHHHHHhhCcceEEecccCcccc
Confidence 333444556666677777777774 22222224666777777777777 3321 23333 23566667888888877
Q ss_pred Cccc
Q 044158 787 PERI 790 (892)
Q Consensus 787 p~~~ 790 (892)
|...
T Consensus 310 ~~~~ 313 (336)
T 2ast_B 310 RPTI 313 (336)
T ss_dssp CSSC
T ss_pred CCcc
Confidence 7643
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=2.4e-23 Score=229.59 Aligned_cols=237 Identities=21% Similarity=0.250 Sum_probs=150.1
Q ss_pred CCCCcEEECcCCcCCccCch----hccCCCCCcEEECcCC---cCccccchhH------hhcCccCcEEEccCCcccc--
Q 044158 403 LPNLGFLTISFNAFNGSIPS----SFGDMNSLIYLDLSNN---QLTGEIPEHL------AMGCFNLEYLLLSNNSLQG-- 467 (892)
Q Consensus 403 l~~L~~L~L~~n~~~~~~p~----~~~~l~~L~~L~L~~n---~l~~~i~~~~------~~~~~~L~~L~L~~n~l~~-- 467 (892)
+++|++|++++|.+.+..+. .+..+++|++|+|++| ++.+.+|..+ +..+++|++|+|++|.+++
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 56666666666666544332 2455666666666664 3334444433 2355666666666666665
Q ss_pred --cccccccccCCCcEEeecCccCcCCCCcc----cccC---------CCCcEEEccCCcCC-CCcc---ccccCCCCCc
Q 044158 468 --QLFSKKINLTKLKRLNLDGNHFIGGIPES----LSNC---------SSLQGLYISDNDIS-GSIP---TWMGNISFLD 528 (892)
Q Consensus 468 --~~~~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~l---------~~L~~L~L~~n~l~-~~~~---~~~~~~~~L~ 528 (892)
.++..+..+++|++|+|++|.+....+.. +..+ ++|++|++++|+++ +.++ ..+..+++|+
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence 35555666667777777777665332222 2223 67777777777766 3333 3455667777
Q ss_pred EEECCCCcccC-----CCcccccCCCCCcEEeCCCCccCC---CcccccccCCCCccEEEccCCccCcc----CChhhhc
Q 044158 529 AIIMPDNHLEG-----PIPSEFCQLDYLEILDLSKNNIAG---RPLNGAFSKCSYLLTLDLCNNRLNGN----IPNWMGR 596 (892)
Q Consensus 529 ~L~L~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~l~~---~~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~ 596 (892)
.|++++|.++. ..+..+..+++|++|+|++|.++. ..++..+..+++|++|+|++|.+++. ++..+..
T Consensus 191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK 270 (386)
T ss_dssp EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence 77777777652 233366777778888888887741 14556677778888888888887765 4555533
Q ss_pred --CCCCCEEecccccccc----cCCccc-cCCCCCCEEEcCCCcCCCCCC
Q 044158 597 --LSQLRYLILANNNFEG----EVPLRL-CQLQKLRLLDLSHNNFSGQIP 639 (892)
Q Consensus 597 --l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~Ls~N~l~g~~p 639 (892)
+++|++|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 7888888888888876 366666 557888888888888875543
No 87
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=3.3e-22 Score=213.04 Aligned_cols=229 Identities=20% Similarity=0.160 Sum_probs=155.8
Q ss_pred CCCcEEEccCCcCCCCccc---cccCCCCCcEEECCCCcccCCCcccc--cCCCCCcEEeCCCCccCCCccc----cccc
Q 044158 501 SSLQGLYISDNDISGSIPT---WMGNISFLDAIIMPDNHLEGPIPSEF--CQLDYLEILDLSKNNIAGRPLN----GAFS 571 (892)
Q Consensus 501 ~~L~~L~L~~n~l~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~----~~~~ 571 (892)
..++.+.+.++.++..... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++ ..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWAT-GRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSS-TTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccc-hhhhhHHHHhh
Confidence 3466777777665421110 11123557777777777777777776 777888888888888775 222 2344
Q ss_pred CCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccccc--C--CccccCCCCCCEEEcCCCcCCCCCCccccCCcc
Q 044158 572 KCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGE--V--PLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSL 647 (892)
Q Consensus 572 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~ 647 (892)
.+++|++|++++|++.+..|..++.+++|++|++++|++.+. + +..+..+++|++|++++|+++ .+|......
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l-- 219 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAAL-- 219 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHH--
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHH--
Confidence 678888888888888877777888888888888888887642 2 223357788888888888875 111100000
Q ss_pred cccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCcccccc---CCC
Q 044158 648 HREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGEL---IRI 724 (892)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~~L 724 (892)
...+++|+.||+++|++++.+|..+..+ ++|
T Consensus 220 ----------------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L 253 (310)
T 4glp_A 220 ----------------------------------------------AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSAL 253 (310)
T ss_dssp ----------------------------------------------HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTC
T ss_pred ----------------------------------------------HhcCCCCCEEECCCCCCCccchhhHHhccCcCcC
Confidence 0012357788888888887777777766 588
Q ss_pred CEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccc
Q 044158 725 HTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSG 784 (892)
Q Consensus 725 ~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 784 (892)
++|+|++|+++ .+|..+. ++|+.|||++|+|++. |. +..++.|+.|++++|+++.
T Consensus 254 ~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 254 NSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 88888888888 5676664 6888888888888853 33 5677888888888887763
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=1.6e-21 Score=200.73 Aligned_cols=212 Identities=20% Similarity=0.228 Sum_probs=150.7
Q ss_pred CCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEc
Q 044158 550 YLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDL 629 (892)
Q Consensus 550 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 629 (892)
..++++++++.++. +|..+. ++++.|++++|++++..+..+.++++|++|++++|++++..+..+..+++|++|++
T Consensus 15 ~~~~l~~~~~~l~~--~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLDS--VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTCCCSS--CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCCCccc--cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 45667777777764 333332 57777777777777777777777788888888888887777777777888888888
Q ss_pred CCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCcc
Q 044158 630 SHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNK 709 (892)
Q Consensus 630 s~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 709 (892)
++|++++..+..+.. +++|+.|++++|+
T Consensus 91 ~~n~l~~~~~~~~~~----------------------------------------------------l~~L~~L~L~~N~ 118 (251)
T 3m19_A 91 ANNQLASLPLGVFDH----------------------------------------------------LTQLDKLYLGGNQ 118 (251)
T ss_dssp TTSCCCCCCTTTTTT----------------------------------------------------CTTCCEEECCSSC
T ss_pred CCCcccccChhHhcc----------------------------------------------------cCCCCEEEcCCCc
Confidence 888877444333322 2357888888888
Q ss_pred ccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCcc
Q 044158 710 LIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPER 789 (892)
Q Consensus 710 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~~ 789 (892)
+++..+..|..+++|+.|+|++|++++..+..|+.+++|+.|||++|++++..|..+..+++|+.|++++|++++....
T Consensus 119 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~- 197 (251)
T 3m19_A 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCE- 197 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTSTT-
T ss_pred CCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCccc-
Confidence 8876666788899999999999999987777899999999999999999988888899999999999999999887444
Q ss_pred ccccCCC------CcccccCCCCCCCCCCCCCCCCC
Q 044158 790 IAQFATF------DEDSYEGNPFLCGPPLPKICNEN 819 (892)
Q Consensus 790 ~~~~~~~------~~~~~~gN~~lc~~~l~~~c~~~ 819 (892)
+..+..+ ......|+. +|+.+....|...
T Consensus 198 ~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~C~~~ 232 (251)
T 3m19_A 198 ILYLSQWIRENSNKVKDGTGQN-LHESPDGVTCSDG 232 (251)
T ss_dssp HHHHHHHHHHSGGGBCC--------CCGGGCBBTTS
T ss_pred cHHHHHHHHhcccceeeccCcc-cccCCCcCccCCC
Confidence 2222111 112233443 4665656667544
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=7e-23 Score=221.54 Aligned_cols=222 Identities=21% Similarity=0.249 Sum_probs=130.2
Q ss_pred CcEEeecCccCcCCCCcccccC--CCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeC
Q 044158 479 LKRLNLDGNHFIGGIPESLSNC--SSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDL 556 (892)
Q Consensus 479 L~~L~L~~n~~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 556 (892)
++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++.
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~---------------- 108 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS---------------- 108 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH----------------
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH----------------
Confidence 555666655543 3344444 5666666666666654433 23445555555555554433
Q ss_pred CCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccc-ccccc-CCccccCCCCCCEEEcCCC-c
Q 044158 557 SKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANN-NFEGE-VPLRLCQLQKLRLLDLSHN-N 633 (892)
Q Consensus 557 s~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~Ls~N-~ 633 (892)
.++..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .
T Consensus 109 --------~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~ 180 (336)
T 2ast_B 109 --------TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD 180 (336)
T ss_dssp --------HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred --------HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC
Confidence 13334444444555555555444444444444555555555555 34331 3333444555555555555 4
Q ss_pred CCCC-CCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcC-ccceeeccCc--c
Q 044158 634 FSGQ-IPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLE-SIHGLDLSCN--K 709 (892)
Q Consensus 634 l~g~-~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~L~~L~Ls~N--~ 709 (892)
+++. ++..+. .++ +|+.|++++| .
T Consensus 181 l~~~~~~~~~~----------------------------------------------------~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 181 FTEKHVQVAVA----------------------------------------------------HVSETITQLNLSGYRKN 208 (336)
T ss_dssp CCHHHHHHHHH----------------------------------------------------HSCTTCCEEECCSCGGG
T ss_pred cChHHHHHHHH----------------------------------------------------hcccCCCEEEeCCCccc
Confidence 4421 111110 122 3555555555 3
Q ss_pred cc-ccCCccccccCCCCEEEccCcc-CCccccccccCCCCCCEEECCCCc-CcccCCccccCCCCCCEEEccCC
Q 044158 710 LI-GEIPSRIGELIRIHTLNLSRNN-LTGTIPVTFSNLRQVESLDLSYNN-LTGKIPPRLVELNALAVFTVAHN 780 (892)
Q Consensus 710 l~-~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~LdLs~N~-l~g~ip~~l~~l~~L~~l~ls~N 780 (892)
++ +.+|..+..+++|+.|++++|. +++..+..++.+++|+.|++++|. ++......+.++++|+.|++++|
T Consensus 209 ~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 209 LQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp SCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 33 3567778889999999999999 888888899999999999999996 33222236888999999999999
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.85 E-value=1e-20 Score=200.86 Aligned_cols=58 Identities=19% Similarity=0.324 Sum_probs=32.7
Q ss_pred ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcc
Q 044158 699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG 760 (892)
Q Consensus 699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g 760 (892)
+|+.|++++|.+++..| +..+++|+.|+|++|++++..| +..+++|+.|++++|++++
T Consensus 174 ~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 174 KLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 34445555555543322 5556666666666666664442 5666666666666666653
No 91
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=5.2e-21 Score=195.52 Aligned_cols=197 Identities=19% Similarity=0.166 Sum_probs=114.1
Q ss_pred CCCcEEECcCCcCCccCchhccCCCCCcEEECcCCc-CccccchhHhhcCccCcEEEccC-CcccccccccccccCCCcE
Q 044158 404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQ-LTGEIPEHLAMGCFNLEYLLLSN-NSLQGQLFSKKINLTKLKR 481 (892)
Q Consensus 404 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~~~i~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~ 481 (892)
++|++|++++|++++..+..|.++++|++|++++|+ ++ .++...+.++++|++|++++ |++++..+..|.++++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 467777777777766655566677777777777775 55 55554455566666666665 6666555555666666666
Q ss_pred EeecCccCcCCCCcccccCCCCc---EEEccCC-cCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCc-EEeC
Q 044158 482 LNLDGNHFIGGIPESLSNCSSLQ---GLYISDN-DISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE-ILDL 556 (892)
Q Consensus 482 L~L~~n~~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L 556 (892)
|++++|++++ +|. |..+++|+ +|++++| ++++.. +..|..+++|+ +|++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~------------------------~~~~~~l~~L~~~L~l 163 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP------------------------VNAFQGLCNETLTLKL 163 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC------------------------TTTTTTTBSSEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC------------------------cccccchhcceeEEEc
Confidence 6666666554 343 55555555 5555555 554333 33444455555 5555
Q ss_pred CCCccCCCcccccccCCCCccEEEccCCc-cCccCChhhhcC-CCCCEEecccccccccCCccccCCCCCCEEEcCCC
Q 044158 557 SKNNIAGRPLNGAFSKCSYLLTLDLCNNR-LNGNIPNWMGRL-SQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHN 632 (892)
Q Consensus 557 s~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N 632 (892)
++|+++.++ +..|.. ++|+.|++++|+ +++..+..+..+ ++|+.|++++|++++ +|.. .+++|+.|+++++
T Consensus 164 ~~n~l~~i~-~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 164 YNNGFTSVQ-GYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CSCCCCEEC-TTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCCCCcccC-HhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 555554311 123333 566666666663 654445556666 666666666666663 3332 4566666666655
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=6.5e-21 Score=194.78 Aligned_cols=189 Identities=17% Similarity=0.175 Sum_probs=131.2
Q ss_pred cCcEEEccCCcccccccccccccCCCcEEeecCcc-CcCCCCcccccCCCCcEEEccC-CcCCCCccccccCCCCCcEEE
Q 044158 454 NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNH-FIGGIPESLSNCSSLQGLYISD-NDISGSIPTWMGNISFLDAII 531 (892)
Q Consensus 454 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~ 531 (892)
+|++|++++|++++..+..|.++++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|+.|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555555444455555666666666664 4444444566666666666665 666655555566666666666
Q ss_pred CCCCcccCCCcccccCCCCCc---EEeCCCC-ccCCCcccccccCCCCcc-EEEccCCccCccCChhhhcCCCCCEEecc
Q 044158 532 MPDNHLEGPIPSEFCQLDYLE---ILDLSKN-NIAGRPLNGAFSKCSYLL-TLDLCNNRLNGNIPNWMGRLSQLRYLILA 606 (892)
Q Consensus 532 L~~n~l~~~~~~~~~~l~~L~---~L~Ls~n-~l~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 606 (892)
+++|++++ +|. +..+++|+ +|++++| .+++++ +..|.++++|+ +|++++|+++...+..+.. ++|+.|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~-~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIP-VNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEEC-TTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcC-cccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 66666664 444 67777777 9999999 888633 55789999999 9999999999443444555 899999999
Q ss_pred ccc-ccccCCccccCC-CCCCEEEcCCCcCCCCCCccccCCc
Q 044158 607 NNN-FEGEVPLRLCQL-QKLRLLDLSHNNFSGQIPPCLDNTS 646 (892)
Q Consensus 607 ~n~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~g~~p~~~~~~~ 646 (892)
+|+ +++..+..+..+ ++|+.|++++|++++..+..+.++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~ 229 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLK 229 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCS
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCc
Confidence 995 997777888999 9999999999999854334444443
No 93
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=5.1e-20 Score=189.52 Aligned_cols=179 Identities=20% Similarity=0.211 Sum_probs=114.9
Q ss_pred CcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCC
Q 044158 455 LEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPD 534 (892)
Q Consensus 455 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 534 (892)
.++++++++.++. +|..+. ++++.|++++|.+.+..+..|.++++|++|++++|++++..+..+..+++|+.|++++
T Consensus 16 ~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 4444555544442 222221 3555666666666555555566666666666666666665555566666666666666
Q ss_pred CcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccC
Q 044158 535 NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEV 614 (892)
Q Consensus 535 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 614 (892)
|++++..+..|..+++|++|++++|+++++ .+..|..+++|++|++++|++++..+..++.+++|++|+|++|++++..
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSL-PSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCc-ChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 666655555666677777777777777653 2445667777777777777777666666777777777777777777666
Q ss_pred CccccCCCCCCEEEcCCCcCCCC
Q 044158 615 PLRLCQLQKLRLLDLSHNNFSGQ 637 (892)
Q Consensus 615 ~~~~~~l~~L~~L~Ls~N~l~g~ 637 (892)
+..+..+++|+.|++++|++++.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 66777777788888888877754
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=3e-20 Score=197.24 Aligned_cols=191 Identities=24% Similarity=0.340 Sum_probs=98.9
Q ss_pred CCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEE
Q 044158 403 LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRL 482 (892)
Q Consensus 403 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 482 (892)
+++|++|++++|.+.. +| .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++. ..+..+++|+.|
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~-~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQIT-DLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCC-CChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 5677777777777664 33 4666777777777777766 4444 34566666666666666543 245555666666
Q ss_pred eecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccC
Q 044158 483 NLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIA 562 (892)
Q Consensus 483 ~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 562 (892)
++++|++.+. + .+..+++|++|++++|++++..+ +..+++|+.|++++|.+++..+ +..+++|++|++++|+++
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 6666655542 2 25555555555555555554322 4444445555555544443221 444444444444444444
Q ss_pred CCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccc
Q 044158 563 GRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE 611 (892)
Q Consensus 563 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 611 (892)
+++ .+..+++|++|++++|++++..+ +..+++|+.|++++|+++
T Consensus 187 ~~~---~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 187 DIS---PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCG---GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred cCh---hhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 321 13444444444444444443221 334444444444444443
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=7.5e-20 Score=198.21 Aligned_cols=242 Identities=18% Similarity=0.102 Sum_probs=187.8
Q ss_pred cEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcE-EEc
Q 044158 382 IALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEY-LLL 460 (892)
Q Consensus 382 ~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~-L~L 460 (892)
++++.++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|+|++|++.+.+|...|.+++++.+ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45777777777 788765 4689999999999987666789999999999999999877888888888888765 666
Q ss_pred cCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccC-CcCCCCccccccCCC-CCcEEECCCCccc
Q 044158 461 SNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISD-NDISGSIPTWMGNIS-FLDAIIMPDNHLE 538 (892)
Q Consensus 461 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~-~L~~L~L~~n~l~ 538 (892)
+.|+++...+..|..+++|++|++++|++.+..+..+....++..|++.+ +++....+..+..+. .++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 77999988889999999999999999999877666777778888999876 456655555666664 6889999999998
Q ss_pred CCCcccccCCCCCcEEeCCC-CccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCcc
Q 044158 539 GPIPSEFCQLDYLEILDLSK-NNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLR 617 (892)
Q Consensus 539 ~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~ 617 (892)
.. |.......+|++|++++ |.++.++ +.+|.++++|++|++++|+++...+..+ .+|+.|.+.++.--..+| .
T Consensus 168 ~i-~~~~f~~~~L~~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~ 241 (350)
T 4ay9_X 168 EI-HNSAFNGTQLDELNLSDNNNLEELP-NDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-T 241 (350)
T ss_dssp EE-CTTSSTTEEEEEEECTTCTTCCCCC-TTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-C
T ss_pred CC-ChhhccccchhHHhhccCCcccCCC-HHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-C
Confidence 54 44444567899999975 6666533 4578999999999999999985444444 456666655554333666 4
Q ss_pred ccCCCCCCEEEcCCCc
Q 044158 618 LCQLQKLRLLDLSHNN 633 (892)
Q Consensus 618 ~~~l~~L~~L~Ls~N~ 633 (892)
+..+++|+.++++++.
T Consensus 242 l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 242 LEKLVALMEASLTYPS 257 (350)
T ss_dssp TTTCCSCCEEECSCHH
T ss_pred chhCcChhhCcCCCCc
Confidence 7889999999997653
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=8.5e-20 Score=207.60 Aligned_cols=187 Identities=26% Similarity=0.360 Sum_probs=110.4
Q ss_pred CCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEc
Q 044158 502 SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL 581 (892)
Q Consensus 502 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L 581 (892)
+|+.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|++|++++|++++ +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST--LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC--cch-hhc--CCCEEEC
Confidence 78888888888876 55544 266777777777776 445 345667777777777765 333 433 6777777
Q ss_pred cCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccc
Q 044158 582 CNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYR 661 (892)
Q Consensus 582 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~ 661 (892)
++|++++ +|. .+++|+.|++++|++++ +|. .+++|++|+|++|++++ +|. +.
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~------------------ 179 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP------------------ 179 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC------------------
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh------------------
Confidence 7777665 444 45666666666666664 443 35566666666666653 443 21
Q ss_pred cccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCC-------CEEEccCccC
Q 044158 662 NEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRI-------HTLNLSRNNL 734 (892)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L-------~~L~Ls~N~l 734 (892)
++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|
T Consensus 180 ------------------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l 219 (571)
T 3cvr_A 180 ------------------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRI 219 (571)
T ss_dssp ------------------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCC
T ss_pred ------------------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcc
Confidence 13555666666665 4444 433 44 5555555555
Q ss_pred CccccccccCCCCCCEEECCCCcCcccCCccccCC
Q 044158 735 TGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVEL 769 (892)
Q Consensus 735 ~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 769 (892)
+ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus 220 ~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 220 T-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp C-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred e-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 5 345555555555555555555555555554443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=2.2e-19 Score=179.05 Aligned_cols=133 Identities=23% Similarity=0.266 Sum_probs=67.3
Q ss_pred CCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEc
Q 044158 502 SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL 581 (892)
Q Consensus 502 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L 581 (892)
+|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|++|++++|+++++ .+..|..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEEEc
Confidence 445555555555444444444445555555555554444334444555555555555555542 2333455555555555
Q ss_pred cCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCC
Q 044158 582 CNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFS 635 (892)
Q Consensus 582 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 635 (892)
++|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence 555555444444555555555555555555444444555555555555555544
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=1.4e-19 Score=195.99 Aligned_cols=240 Identities=19% Similarity=0.107 Sum_probs=169.6
Q ss_pred cEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCc-ccccCCCCCcE-EeCC
Q 044158 480 KRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIP-SEFCQLDYLEI-LDLS 557 (892)
Q Consensus 480 ~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~-L~Ls 557 (892)
+.++.++++++ .+|..+ .+++++|+|++|+++...+..|.++++|++|+|++|++.+.+| .+|.+++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56788888887 567655 3678999999999986666678889999999999998866554 46778877765 5666
Q ss_pred CCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccc-ccccccCCccccCCC-CCCEEEcCCCcCC
Q 044158 558 KNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILAN-NNFEGEVPLRLCQLQ-KLRLLDLSHNNFS 635 (892)
Q Consensus 558 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~ 635 (892)
+|+++.+ .+..|..+++|++|++++|++.+..+..+....++..|++.+ +++....+..+..+. .++.|++++|+++
T Consensus 89 ~N~l~~l-~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 ANNLLYI-NPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ETTCCEE-CTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CCccccc-CchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 7888763 367788888888898888888866666666667778888865 456644445565553 5788888888887
Q ss_pred CCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccC-ccccccC
Q 044158 636 GQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSC-NKLIGEI 714 (892)
Q Consensus 636 g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~ 714 (892)
.+|..... ..+++.+++++ |.++ .+
T Consensus 168 -~i~~~~f~----------------------------------------------------~~~L~~l~l~~~n~l~-~i 193 (350)
T 4ay9_X 168 -EIHNSAFN----------------------------------------------------GTQLDELNLSDNNNLE-EL 193 (350)
T ss_dssp -EECTTSST----------------------------------------------------TEEEEEEECTTCTTCC-CC
T ss_pred -CCChhhcc----------------------------------------------------ccchhHHhhccCCccc-CC
Confidence 34332211 12477788875 5555 55
Q ss_pred C-ccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCc
Q 044158 715 P-SRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNN 781 (892)
Q Consensus 715 p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~ 781 (892)
| ..|..+++|++|+|++|+|+...+.. +.+|+.|.+.++.--..+| .+.++++|+.++++++.
T Consensus 194 ~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 194 PNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp CTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred CHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 5 45788888888888888888554444 4455556655554444677 47788888888887664
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=2.2e-19 Score=204.13 Aligned_cols=196 Identities=24% Similarity=0.287 Sum_probs=153.6
Q ss_pred CCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCC
Q 044158 478 KLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLS 557 (892)
Q Consensus 478 ~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 557 (892)
+|+.|++++|.+++ +|..+ .++|++|++++|+++ .+| ..+++|+.|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 89999999999886 66655 378999999999988 556 457889999999999987 666 655 89999999
Q ss_pred CCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCC
Q 044158 558 KNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQ 637 (892)
Q Consensus 558 ~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~ 637 (892)
+|+++++ |. .+++|+.|++++|++++ +|. .+++|++|+|++|++++ +|. +. ++|+.|+|++|+|+ .
T Consensus 129 ~N~l~~l--p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTML--PE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSCC--CC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCCC--CC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 9999873 43 67899999999999986 565 57889999999999986 666 65 88999999999988 6
Q ss_pred CCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCcc
Q 044158 638 IPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSR 717 (892)
Q Consensus 638 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 717 (892)
+|. +.. .. ......|+.|+|++|.|+ .+|..
T Consensus 195 lp~-~~~-~L----------------------------------------------~~~~~~L~~L~Ls~N~l~-~lp~~ 225 (571)
T 3cvr_A 195 LPA-VPV-RN----------------------------------------------HHSEETEIFFRCRENRIT-HIPEN 225 (571)
T ss_dssp CCC-CC-------------------------------------------------------CCEEEECCSSCCC-CCCGG
T ss_pred hhh-HHH-hh----------------------------------------------hcccccceEEecCCCcce-ecCHH
Confidence 665 332 10 001123588999999998 58888
Q ss_pred ccccCCCCEEEccCccCCccccccccCCCC
Q 044158 718 IGELIRIHTLNLSRNNLTGTIPVTFSNLRQ 747 (892)
Q Consensus 718 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 747 (892)
+..+++|+.|+|++|.+++.+|..+..++.
T Consensus 226 l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 255 (571)
T 3cvr_A 226 ILSLDPTCTIILEDNPLSSRIRESLSQQTA 255 (571)
T ss_dssp GGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence 888999999999999999999988877654
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.80 E-value=2.8e-19 Score=178.26 Aligned_cols=159 Identities=24% Similarity=0.239 Sum_probs=69.0
Q ss_pred cCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECC
Q 044158 454 NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP 533 (892)
Q Consensus 454 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 533 (892)
+|++|++++|++++..+..|..+++|++|++++|++.+..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 34444444444443333334444444444444444443333334444445555555444444333334444444444444
Q ss_pred CCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccccc
Q 044158 534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGE 613 (892)
Q Consensus 534 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 613 (892)
+|++++..+..+..+++|++|++++|+++++ .+..+..+++|++|++++|.+.+. +++|+.|+++.|+++|.
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-PDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGV 180 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTT
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCcccee-CHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCce
Confidence 4444433333344444444444444444431 122344444444444444433321 22344444444444444
Q ss_pred CCccccC
Q 044158 614 VPLRLCQ 620 (892)
Q Consensus 614 ~~~~~~~ 620 (892)
+|..++.
T Consensus 181 ip~~~~~ 187 (208)
T 2o6s_A 181 VRNSAGS 187 (208)
T ss_dssp BBCTTSS
T ss_pred eeccCcc
Confidence 4444433
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=172.38 Aligned_cols=90 Identities=22% Similarity=0.221 Sum_probs=76.8
Q ss_pred ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158 699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778 (892)
Q Consensus 699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls 778 (892)
+|+.|+|++|.+++..|..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+.|+++
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 46667777777776667778888899999999999998888899999999999999999998889999999999999999
Q ss_pred CCcccccCCc
Q 044158 779 HNNLSGKIPE 788 (892)
Q Consensus 779 ~N~l~g~ip~ 788 (892)
+|++++..+-
T Consensus 162 ~N~l~c~c~l 171 (220)
T 2v70_A 162 ANPFNCNCYL 171 (220)
T ss_dssp SCCEECSGGG
T ss_pred CcCCcCCCch
Confidence 9999887663
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=1.2e-18 Score=189.46 Aligned_cols=180 Identities=25% Similarity=0.285 Sum_probs=144.1
Q ss_pred CcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhh-cCCCCCEEecccccccccCCccccCCCCCCEEEc
Q 044158 551 LEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMG-RLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDL 629 (892)
Q Consensus 551 L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 629 (892)
-+.++++++.++.+ |..+ .+.++.|+|++|++++..+..+. .+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 20 ~~~l~c~~~~l~~i--P~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLPNV--PQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCSSC--CSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCcc--CccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 36899999999863 4433 35689999999999987777787 8999999999999999877788999999999999
Q ss_pred CCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCcc
Q 044158 630 SHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNK 709 (892)
Q Consensus 630 s~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 709 (892)
++|++++..+..+.. +++|+.|+|++|+
T Consensus 96 s~N~l~~~~~~~~~~----------------------------------------------------l~~L~~L~L~~N~ 123 (361)
T 2xot_A 96 SSNHLHTLDEFLFSD----------------------------------------------------LQALEVLLLYNNH 123 (361)
T ss_dssp CSSCCCEECTTTTTT----------------------------------------------------CTTCCEEECCSSC
T ss_pred CCCcCCcCCHHHhCC----------------------------------------------------CcCCCEEECCCCc
Confidence 999987544433332 3468889999999
Q ss_pred ccccCCccccccCCCCEEEccCccCCccccccc---cCCCCCCEEECCCCcCcccCCccccCCCC--CCEEEccCCcccc
Q 044158 710 LIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTF---SNLRQVESLDLSYNNLTGKIPPRLVELNA--LAVFTVAHNNLSG 784 (892)
Q Consensus 710 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~LdLs~N~l~g~ip~~l~~l~~--L~~l~ls~N~l~g 784 (892)
+++..|..|..+++|+.|+|++|+|++..+..| ..+++|+.|||++|+|++..+..+..++. ++.|++++|++.+
T Consensus 124 i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 124 IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 998888889999999999999999986555555 56889999999999999766677777776 4788999998876
Q ss_pred cC
Q 044158 785 KI 786 (892)
Q Consensus 785 ~i 786 (892)
..
T Consensus 204 ~C 205 (361)
T 2xot_A 204 DC 205 (361)
T ss_dssp CH
T ss_pred Cc
Confidence 54
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=2.8e-18 Score=172.11 Aligned_cols=156 Identities=24% Similarity=0.271 Sum_probs=133.1
Q ss_pred cEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccccc
Q 044158 577 LTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDL 656 (892)
Q Consensus 577 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~ 656 (892)
+.++++++.++ .+|..+. ++|+.|++++|++++..+..+..+++|++|+|++|++++..|..+..
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~------------ 78 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG------------ 78 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC------------
Confidence 67899999988 5665544 68999999999999877778999999999999999998666665543
Q ss_pred ccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCc
Q 044158 657 IPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTG 736 (892)
Q Consensus 657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 736 (892)
+++|+.|+|++|.+++..+..|..+++|+.|+|++|++++
T Consensus 79 ----------------------------------------l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~ 118 (220)
T 2v9t_B 79 ----------------------------------------LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINC 118 (220)
T ss_dssp ----------------------------------------CSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred ----------------------------------------CcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCE
Confidence 3368899999999996666668899999999999999998
Q ss_pred cccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCC
Q 044158 737 TIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIP 787 (892)
Q Consensus 737 ~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip 787 (892)
..|..|..+++|+.|+|++|++++..|..+..+++|+.|++++|++.+..+
T Consensus 119 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred eCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 889999999999999999999998888889999999999999999987543
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.76 E-value=3.4e-18 Score=171.55 Aligned_cols=115 Identities=17% Similarity=0.271 Sum_probs=105.7
Q ss_pred CccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEc
Q 044158 698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTV 777 (892)
Q Consensus 698 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~l 777 (892)
++|+.|++++|++++..|..|..+++|++|+|++|++++..|..|+++++|++|+|++|+|++..|..+..+++|++|++
T Consensus 57 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 136 (220)
T 2v70_A 57 PQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136 (220)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEEC
T ss_pred CCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEEC
Confidence 35777888888888777778999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccCCccccccCCCCcccccCCCCCCCCCC
Q 044158 778 AHNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPL 812 (892)
Q Consensus 778 s~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l 812 (892)
++|++++..|..+..+..+....+.+||+.|+|++
T Consensus 137 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 137 YDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp TTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred CCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 99999999998888888899999999999998864
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.76 E-value=5.1e-18 Score=178.29 Aligned_cols=171 Identities=25% Similarity=0.400 Sum_probs=106.9
Q ss_pred CCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCE
Q 044158 547 QLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRL 626 (892)
Q Consensus 547 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 626 (892)
.+++|++|++++|.++.+ + .+..+++|++|++++|++++..+ +..+++|++|++++|++++ ++ .+..+++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hcCcccEEEccCCCcccC--h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 344555555555555542 1 35555666666666666654333 5556666666666666653 22 3566666666
Q ss_pred EEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeecc
Q 044158 627 LDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLS 706 (892)
Q Consensus 627 L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls 706 (892)
|++++|++++ ++ .+. .+++|+.|+++
T Consensus 117 L~L~~n~i~~-~~-~l~----------------------------------------------------~l~~L~~L~l~ 142 (291)
T 1h6t_A 117 LSLEHNGISD-IN-GLV----------------------------------------------------HLPQLESLYLG 142 (291)
T ss_dssp EECTTSCCCC-CG-GGG----------------------------------------------------GCTTCCEEECC
T ss_pred EECCCCcCCC-Ch-hhc----------------------------------------------------CCCCCCEEEcc
Confidence 6666666653 11 111 12346667777
Q ss_pred CccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccc
Q 044158 707 CNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSG 784 (892)
Q Consensus 707 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 784 (892)
+|++++. ..++.+++|+.|++++|++++..| +..+++|+.|++++|++++ +| .+..+++|+.|++++|+++.
T Consensus 143 ~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 143 NNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp SSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred CCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 7776654 467777788888888888876555 7778888888888888875 34 37778888888888887765
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=5.9e-18 Score=169.77 Aligned_cols=153 Identities=22% Similarity=0.236 Sum_probs=127.6
Q ss_pred cEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCC
Q 044158 552 EILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSH 631 (892)
Q Consensus 552 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 631 (892)
+.++++++.++.+ |..+. ++|+.|++++|++++..+..|..+++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 14 ~~v~c~~~~l~~i--P~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEI--PTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSC--CSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcC--CCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 6788999988853 44333 6899999999999977777888999999999999999988888999999999999999
Q ss_pred CcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCcccc
Q 044158 632 NNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLI 711 (892)
Q Consensus 632 N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 711 (892)
|++++..+..+. .+++|+.|+|++|+++
T Consensus 90 N~l~~l~~~~f~----------------------------------------------------~l~~L~~L~L~~N~l~ 117 (220)
T 2v9t_B 90 NKITELPKSLFE----------------------------------------------------GLFSLQLLLLNANKIN 117 (220)
T ss_dssp SCCCCCCTTTTT----------------------------------------------------TCTTCCEEECCSSCCC
T ss_pred CcCCccCHhHcc----------------------------------------------------CCCCCCEEECCCCCCC
Confidence 998833222222 2346889999999999
Q ss_pred ccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcc
Q 044158 712 GEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTG 760 (892)
Q Consensus 712 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g 760 (892)
+..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 118 CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred EeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 8888889999999999999999998888889999999999999998875
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=5e-18 Score=178.32 Aligned_cols=188 Identities=25% Similarity=0.383 Sum_probs=124.3
Q ss_pred CcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCCCCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCE
Q 044158 51 LESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEG 130 (892)
Q Consensus 51 L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~ 130 (892)
+..+.+..+.+++... +..+++|++|++++|.+... +.+..+++|++|++++|.+++ ++. +..+++|++
T Consensus 26 ~~~~~l~~~~~~~~~~------~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~-~~~--l~~l~~L~~ 94 (291)
T 1h6t_A 26 TIKDNLKKKSVTDAVT------QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTD-IKP--LANLKNLGW 94 (291)
T ss_dssp HHHHHTTCSCTTSEEC------HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCE
T ss_pred HHHHHhcCCCcccccc------hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCC-Ccc--cccCCCCCE
Confidence 3344455555543322 34566777777777776643 346677777777777777663 332 667777777
Q ss_pred EeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCccccccccCCCCCCEEECCCCCCCCccCCcccccCCCCCcEEEc
Q 044158 131 LDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGSKVLHSIGSFPSLKTLYLKSNNFAKTVTTTQGLCELAHLQELYI 210 (892)
Q Consensus 131 L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L 210 (892)
|++++|.+++. +. +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+. ..+..+++|++|++
T Consensus 95 L~l~~n~l~~~--~~-l~~l~~L~~L~L~~n~i~~~----~~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L 163 (291)
T 1h6t_A 95 LFLDENKVKDL--SS-LKDLKKLKSLSLEHNGISDI----NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSL 163 (291)
T ss_dssp EECCSSCCCCG--GG-GTTCTTCCEEECTTSCCCCC----GGGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEEC
T ss_pred EECCCCcCCCC--hh-hccCCCCCEEECCCCcCCCC----hhhcCCCCCCEEEccCCcCCcc----hhhccCCCCCEEEc
Confidence 77777777664 22 67777777777777777653 3566677777777777776654 24667777777777
Q ss_pred cCCcCccCccccccCCCCCcEEeCCCCCcccccCCCcccccccCcEEeccCcccc
Q 044158 211 DHNDFIGSLPWCLANLTSLRVLHVPDNQLTENLSSSPLMHLTSIELLILSNNHFQ 265 (892)
Q Consensus 211 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~l~~L~~L~L~~n~l~ 265 (892)
++|.+.+..+ +..+++|+.|++++|.+++ + ..+..+++|+.|++++|++.
T Consensus 164 ~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l--~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 164 EDNQISDIVP--LAGLTKLQNLYLSKNHISD-L--RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCB-C--GGGTTCTTCSEEEEEEEEEE
T ss_pred cCCccccchh--hcCCCccCEEECCCCcCCC-C--hhhccCCCCCEEECcCCccc
Confidence 7777776554 7777777777777777765 2 34677777777777777665
No 108
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=4.2e-18 Score=185.24 Aligned_cols=177 Identities=24% Similarity=0.268 Sum_probs=141.3
Q ss_pred cEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCccccccc-CCCCccEEEccCCccCccCChhhhcCCCCCEEecc
Q 044158 528 DAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFS-KCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILA 606 (892)
Q Consensus 528 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 606 (892)
+.++++++.++. +|..+. ..++.|+|++|+++++. +..+. ++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~-~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLR-AEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEEC-TTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccC-hhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 578899998874 566554 45889999999998733 55666 88999999999999998777889999999999999
Q ss_pred cccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeec
Q 044158 607 NNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTK 686 (892)
Q Consensus 607 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 686 (892)
+|++++..+..|..+++|++|+|++|++++..|..+..
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~------------------------------------------ 134 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED------------------------------------------ 134 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT------------------------------------------
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC------------------------------------------
Confidence 99998777778889999999999999988655554433
Q ss_pred ccccccCCCCcCccceeeccCccccccCCccc---cccCCCCEEEccCccCCccccccccCCCC--CCEEECCCCcCcc
Q 044158 687 ERSYTYKGQPLESIHGLDLSCNKLIGEIPSRI---GELIRIHTLNLSRNNLTGTIPVTFSNLRQ--VESLDLSYNNLTG 760 (892)
Q Consensus 687 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~LdLs~N~l~g 760 (892)
+++|+.|+|++|++++..+..| ..+++|+.|+|++|+|++..+..+..++. ++.|+|++|.+..
T Consensus 135 ----------l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 135 ----------MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp ----------CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ----------cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence 3368889999999986444444 67899999999999999777777888876 4889999998874
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=3.7e-18 Score=196.53 Aligned_cols=168 Identities=23% Similarity=0.320 Sum_probs=127.8
Q ss_pred cCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECC
Q 044158 454 NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMP 533 (892)
Q Consensus 454 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~ 533 (892)
.+..+.++.+.+....+ +..+++|+.|++++|.+... + .+..+++|+.|+|++|++++..+ +..+++|+.|+|+
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls 95 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD 95 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence 45556667777665433 45788888899998888743 3 57888889999999888887655 7788888888888
Q ss_pred CCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccccc
Q 044158 534 DNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGE 613 (892)
Q Consensus 534 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 613 (892)
+|.+++. ..+..+++|+.|+|++|.++++ ..+..+++|+.|+|++|++++. ..+..+++|+.|+|++|++++.
T Consensus 96 ~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 96 ENKIKDL--SSLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp SSCCCCC--TTSTTCTTCCEEECTTSCCCCC---GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred CCCCCCC--hhhccCCCCCEEEecCCCCCCC---ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 8888752 3677888888888888888763 3577788888888888888754 5677788888888888888765
Q ss_pred CCccccCCCCCCEEEcCCCcCCC
Q 044158 614 VPLRLCQLQKLRLLDLSHNNFSG 636 (892)
Q Consensus 614 ~~~~~~~l~~L~~L~Ls~N~l~g 636 (892)
.| +..+++|+.|+|++|++++
T Consensus 169 ~~--l~~l~~L~~L~Ls~N~i~~ 189 (605)
T 1m9s_A 169 VP--LAGLTKLQNLYLSKNHISD 189 (605)
T ss_dssp GG--GTTCTTCCEEECCSSCCCB
T ss_pred hh--hccCCCCCEEECcCCCCCC
Confidence 55 7778888888888887764
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.7e-17 Score=191.06 Aligned_cols=189 Identities=20% Similarity=0.227 Sum_probs=102.4
Q ss_pred CCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEee
Q 044158 405 NLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNL 484 (892)
Q Consensus 405 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 484 (892)
.+..+.+..+.+.+..+ +..+++|+.|++++|.+. .++. +..+++|+.|+|++|.+++..+ +..+++|+.|+|
T Consensus 22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L 94 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SVQG--IQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCC-CCTT--GGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEEC
T ss_pred HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCC-CChH--HccCCCCCEEEeeCCCCCCChh--hccCCCCCEEEC
Confidence 45556666666664433 456677778888887776 5553 3456777777777777665444 566666666666
Q ss_pred cCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCC
Q 044158 485 DGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR 564 (892)
Q Consensus 485 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 564 (892)
++|.+.+ +| .+..+++|+.|+|++|++.+. ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.++++
T Consensus 95 s~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~ 168 (605)
T 1m9s_A 95 DENKIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDI 168 (605)
T ss_dssp CSSCCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCC
T ss_pred cCCCCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCc
Confidence 6666654 22 455666666666666665542 2344455555555555555433 3344444455555555444432
Q ss_pred cccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccc
Q 044158 565 PLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFE 611 (892)
Q Consensus 565 ~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 611 (892)
. | +..+++|+.|+|++|++++. ..+..+++|+.|+|++|++.
T Consensus 169 ~-~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 169 V-P--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp G-G--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred h-h--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 1 1 44444444444444444432 12444444444444444444
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.3e-17 Score=166.64 Aligned_cols=158 Identities=22% Similarity=0.229 Sum_probs=136.8
Q ss_pred CccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccccccc
Q 044158 575 YLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYY 654 (892)
Q Consensus 575 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~ 654 (892)
+-+.++.+++.++ .+|..+. ++|++|+|++|++++..|..+..+++|++|+|++|++++..+..+..
T Consensus 20 s~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~---------- 86 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS---------- 86 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred eCCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc----------
Confidence 4678999999987 5665443 79999999999999988999999999999999999996433333332
Q ss_pred ccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccC
Q 044158 655 DLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNL 734 (892)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 734 (892)
+++|+.|+|++|++++..+..|..+++|+.|+|++|++
T Consensus 87 ------------------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l 124 (229)
T 3e6j_A 87 ------------------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL 124 (229)
T ss_dssp ------------------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred ------------------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCcc
Confidence 34799999999999987777789999999999999999
Q ss_pred CccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccccCCc
Q 044158 735 TGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSGKIPE 788 (892)
Q Consensus 735 ~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g~ip~ 788 (892)
+ .+|..+..+++|+.|+|++|+|++..+..+..+++|+.|++++|++.+..+.
T Consensus 125 ~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 177 (229)
T 3e6j_A 125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRD 177 (229)
T ss_dssp C-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGG
T ss_pred c-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcch
Confidence 9 7899999999999999999999987778899999999999999999987763
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.1e-17 Score=166.96 Aligned_cols=157 Identities=23% Similarity=0.248 Sum_probs=132.4
Q ss_pred CCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEc
Q 044158 550 YLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDL 629 (892)
Q Consensus 550 ~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 629 (892)
+.+.++.+++.++.+ |..+ .++|++|++++|++++..|..+..+++|++|+|++|++++..+..+..+++|++|+|
T Consensus 20 s~~~v~c~~~~l~~i--p~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHASV--PAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCSSC--CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcCcc--CCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence 367899999998853 4433 389999999999999888889999999999999999998666677889999999999
Q ss_pred CCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCcc
Q 044158 630 SHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNK 709 (892)
Q Consensus 630 s~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~ 709 (892)
++|++++..+..+.. +++|+.|++++|+
T Consensus 96 s~N~l~~l~~~~~~~----------------------------------------------------l~~L~~L~Ls~N~ 123 (229)
T 3e6j_A 96 GTNQLTVLPSAVFDR----------------------------------------------------LVHLKELFMCCNK 123 (229)
T ss_dssp CSSCCCCCCTTTTTT----------------------------------------------------CTTCCEEECCSSC
T ss_pred CCCcCCccChhHhCc----------------------------------------------------chhhCeEeccCCc
Confidence 999998544433332 3468999999999
Q ss_pred ccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCC
Q 044158 710 LIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIP 763 (892)
Q Consensus 710 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip 763 (892)
++ .+|..+..+++|+.|+|++|++++..+..|..+++|+.|++++|.+++..+
T Consensus 124 l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 124 LT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred cc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 99 788899999999999999999998877889999999999999999987654
No 113
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=3.5e-17 Score=161.30 Aligned_cols=155 Identities=17% Similarity=0.269 Sum_probs=96.0
Q ss_pred cCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCccccc
Q 044158 571 SKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHRE 650 (892)
Q Consensus 571 ~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~ 650 (892)
..+++|++|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..+..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------ 110 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence 33445555555555555 333 3555555666666655443 2234555666666666666665444433322
Q ss_pred ccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEcc
Q 044158 651 EGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLS 730 (892)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 730 (892)
+++|+.|++++|.+++..|..++.+++|+.|+++
T Consensus 111 ----------------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~ 144 (197)
T 4ezg_A 111 ----------------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLS 144 (197)
T ss_dssp ----------------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECC
T ss_pred ----------------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEcc
Confidence 2246666666777766667777788888888888
Q ss_pred CccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccc
Q 044158 731 RNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSG 784 (892)
Q Consensus 731 ~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 784 (892)
+|.+.+.+| .++.+++|+.|++++|++++ +| .+..+++|+.|++++|++.+
T Consensus 145 ~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 145 YNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 887333555 57788888888888888885 34 67788888888888887753
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.69 E-value=1e-18 Score=200.10 Aligned_cols=196 Identities=18% Similarity=0.167 Sum_probs=132.2
Q ss_pred cCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCC
Q 044158 522 GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLR 601 (892)
Q Consensus 522 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 601 (892)
..++.|+.|+|++|+++ .+|..++++++|+.|++++|.... ..+.. +..+...+..|..++.+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~-~l~~l-----------l~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLL-TIILL-----------MRALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHH-HHHHH-----------HHHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhh-hHHHH-----------HHhcccccCCHHHHHHHHhcc
Confidence 34455555555555554 445555555555555554432100 00000 000113445566666666666
Q ss_pred EEe-cccccccccCCc------ccc--CCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCC
Q 044158 602 YLI-LANNNFEGEVPL------RLC--QLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVG 672 (892)
Q Consensus 602 ~L~-L~~n~l~~~~~~------~~~--~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (892)
.|+ ++.|.+.. ++. .+. ....|+.|+|++|++++ +|. +..
T Consensus 413 ~L~~l~~n~~~~-L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~---------------------------- 461 (567)
T 1dce_A 413 AVDPMRAAYLDD-LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQ---------------------------- 461 (567)
T ss_dssp HHCGGGHHHHHH-HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGG----------------------------
T ss_pred cCcchhhcccch-hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccc----------------------------
Confidence 666 44443321 110 000 11358999999999985 564 433
Q ss_pred CCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEE
Q 044158 673 PSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLD 752 (892)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~Ld 752 (892)
+++|+.|+|++|.++ .+|..++.+++|+.|+|++|+|++ +| .++++++|+.|+
T Consensus 462 ------------------------l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 462 ------------------------LLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELL 514 (567)
T ss_dssp ------------------------GTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEE
T ss_pred ------------------------cccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEE
Confidence 336889999999999 789999999999999999999996 67 899999999999
Q ss_pred CCCCcCcccC-CccccCCCCCCEEEccCCcccccCCc
Q 044158 753 LSYNNLTGKI-PPRLVELNALAVFTVAHNNLSGKIPE 788 (892)
Q Consensus 753 Ls~N~l~g~i-p~~l~~l~~L~~l~ls~N~l~g~ip~ 788 (892)
|++|+|++.+ |..+..+++|+.|++++|++++.+|.
T Consensus 515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 9999999887 99999999999999999999988775
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.69 E-value=4.2e-17 Score=159.77 Aligned_cols=90 Identities=24% Similarity=0.348 Sum_probs=71.6
Q ss_pred ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158 699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778 (892)
Q Consensus 699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls 778 (892)
+|+.|+|++|++++..|..|..+++|++|+|++|++++..|..|+++++|+.|+|++|++++.+|..+..+++|++|+++
T Consensus 55 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred CCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 56667777777777777777888888888888888887777778888888888888888888888888888888888888
Q ss_pred CCcccccCCc
Q 044158 779 HNNLSGKIPE 788 (892)
Q Consensus 779 ~N~l~g~ip~ 788 (892)
+|+++|.++.
T Consensus 135 ~N~l~c~c~l 144 (192)
T 1w8a_A 135 SNPFNCNCHL 144 (192)
T ss_dssp TCCBCCSGGG
T ss_pred CCCccCcCcc
Confidence 8888877663
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=1.2e-16 Score=157.42 Aligned_cols=151 Identities=17% Similarity=0.219 Sum_probs=73.0
Q ss_pred CccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEE
Q 044158 452 CFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAII 531 (892)
Q Consensus 452 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 531 (892)
+++|+.|++++|.++. ++ .+..+++|++|++++|.+.. +..+..+++|++|++++|++++..+..+..+++|+.|+
T Consensus 43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 4455555555555552 22 34455555555555554331 22445555555555555555544444444445555555
Q ss_pred CCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCc-cCccCChhhhcCCCCCEEecccccc
Q 044158 532 MPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNR-LNGNIPNWMGRLSQLRYLILANNNF 610 (892)
Q Consensus 532 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~n~l 610 (892)
+++|.+++..|..+ ..+++|++|++++|+ ++ .+| .+..+++|++|++++|++
T Consensus 119 Ls~n~i~~~~~~~l-------------------------~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 119 ISHSAHDDSILTKI-------------------------NTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp CCSSBCBGGGHHHH-------------------------TTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCC
T ss_pred ecCCccCcHhHHHH-------------------------hhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCC
Confidence 55554444444444 444555555555554 32 233 344555555555555555
Q ss_pred cccCCccccCCCCCCEEEcCCCcCC
Q 044158 611 EGEVPLRLCQLQKLRLLDLSHNNFS 635 (892)
Q Consensus 611 ~~~~~~~~~~l~~L~~L~Ls~N~l~ 635 (892)
++ ++ .+..+++|++|++++|++.
T Consensus 172 ~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 172 HD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CC-CT-TGGGCSSCCEEEECBC---
T ss_pred cC-hH-HhccCCCCCEEEeeCcccC
Confidence 43 22 4455555555555555543
No 117
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=8e-17 Score=157.76 Aligned_cols=132 Identities=25% Similarity=0.330 Sum_probs=87.0
Q ss_pred cEEEccCCccCccCChhhhcCCCCCEEecccccccccCCc-cccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccc
Q 044158 577 LTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPL-RLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYD 655 (892)
Q Consensus 577 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~ 655 (892)
+++++++|.++ .+|..+. ++|++|++++|++++..+. .+..+++|++|+|++|++++..|..+..+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l---------- 77 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGA---------- 77 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTC----------
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCc----------
Confidence 34455555543 3343222 2555555555555544332 25566666666666666665545444322
Q ss_pred cccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCC
Q 044158 656 LIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLT 735 (892)
Q Consensus 656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 735 (892)
++|+.|+|++|++++..|..|..+++|++|+|++|+++
T Consensus 78 ------------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 115 (192)
T 1w8a_A 78 ------------------------------------------SHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQIS 115 (192)
T ss_dssp ------------------------------------------TTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCC
T ss_pred ------------------------------------------ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 24666777777777667777888888999999999999
Q ss_pred ccccccccCCCCCCEEECCCCcCcccCC
Q 044158 736 GTIPVTFSNLRQVESLDLSYNNLTGKIP 763 (892)
Q Consensus 736 ~~~p~~~~~l~~L~~LdLs~N~l~g~ip 763 (892)
+.+|..|+.+++|+.|+|++|.+++..+
T Consensus 116 ~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 116 CVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred eeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 8888889999999999999999987765
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=5.2e-19 Score=202.54 Aligned_cols=122 Identities=20% Similarity=0.295 Sum_probs=84.1
Q ss_pred CCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEc
Q 044158 502 SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL 581 (892)
Q Consensus 502 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L 581 (892)
.|+.|++++|.+++ +|. ++.+++|+.|+|++|.++ .+|..++.+++|+.|+|++|+++++ | .+..+++|++|+|
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l--p-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--D-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC--G-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC--c-ccCCCCCCcEEEC
Confidence 36666777766664 344 666667777777777766 5666777777777777777777763 3 6777777777777
Q ss_pred cCCccCccC-ChhhhcCCCCCEEecccccccccCCcc---ccCCCCCCEEEc
Q 044158 582 CNNRLNGNI-PNWMGRLSQLRYLILANNNFEGEVPLR---LCQLQKLRLLDL 629 (892)
Q Consensus 582 ~~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L 629 (892)
++|++++.. |..++.+++|+.|+|++|++++..|.. +..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 777777665 777777777777888777777654421 234677777764
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=6.3e-17 Score=167.06 Aligned_cols=166 Identities=22% Similarity=0.288 Sum_probs=91.6
Q ss_pred CcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCC
Q 044158 455 LEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPD 534 (892)
Q Consensus 455 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 534 (892)
+..+++++|.+++.. .+..+++|+.|++++|.+.. ++ .+..+++|++|++++|++++..+ +..+++|+.|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 334444444444322 33444555555555555442 22 34555555555555555554333 55555555555555
Q ss_pred CcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccC
Q 044158 535 NHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEV 614 (892)
Q Consensus 535 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~ 614 (892)
|++++. |. +.. ++|++|++++|+++++ ..+..+++|++|++++|++++. + .++.+++|++|++++|++++.
T Consensus 95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~---~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 95 NRLKNL-NG-IPS-ACLSRLFLDNNELRDT---DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp SCCSCC-TT-CCC-SSCCEEECCSSCCSBS---GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC-
T ss_pred CccCCc-Cc-ccc-CcccEEEccCCccCCC---hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch-
Confidence 555532 22 222 5666666666666652 2466666666666666666643 2 466666677777777766654
Q ss_pred CccccCCCCCCEEEcCCCcCCC
Q 044158 615 PLRLCQLQKLRLLDLSHNNFSG 636 (892)
Q Consensus 615 ~~~~~~l~~L~~L~Ls~N~l~g 636 (892)
..+..+++|+.|++++|++++
T Consensus 166 -~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEEEC
T ss_pred -HHhccCCCCCEEeCCCCcccC
Confidence 456666677777777776653
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=1.3e-17 Score=197.20 Aligned_cols=155 Identities=23% Similarity=0.291 Sum_probs=73.9
Q ss_pred CCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCC---------CccccccCCCCCcEEECCCCcccCCCcccccC
Q 044158 477 TKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISG---------SIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQ 547 (892)
Q Consensus 477 ~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~---------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 547 (892)
+.++.|+|.+|.+... +..+ |+.++|+.|.+.+ ..+..+..++.|+.|+|++|.+. .+|..+..
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~-----l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~ 245 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQAL-----LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFK 245 (727)
T ss_dssp -------------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGG
T ss_pred CccceEEeeCCCCCcc-hhhH-----hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcC
Confidence 5678888888887653 3322 3344444444332 34555666666666666666666 45555556
Q ss_pred CCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEE
Q 044158 548 LDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLL 627 (892)
Q Consensus 548 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 627 (892)
+++|++|+|++|.++ .+|..|.++++|++|+|++|+++ .+|..++.+++|++|+|++|.++ .+|..|+.+++|++|
T Consensus 246 l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 246 YDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFL 321 (727)
T ss_dssp CCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCE
T ss_pred CCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEE
Confidence 666666666666666 34556666666666666666666 55666666666666666666665 556666666666666
Q ss_pred EcCCCcCCCCCCccc
Q 044158 628 DLSHNNFSGQIPPCL 642 (892)
Q Consensus 628 ~Ls~N~l~g~~p~~~ 642 (892)
+|++|+++|.+|..+
T Consensus 322 ~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 322 GVEGNPLEKQFLKIL 336 (727)
T ss_dssp ECTTSCCCSHHHHHH
T ss_pred eCCCCccCCCChHHH
Confidence 666666666555544
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.67 E-value=2e-17 Score=195.60 Aligned_cols=183 Identities=21% Similarity=0.214 Sum_probs=104.8
Q ss_pred ccCcEEEccCCcccccccccccccCCCc-----EEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCC
Q 044158 453 FNLEYLLLSNNSLQGQLFSKKINLTKLK-----RLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFL 527 (892)
Q Consensus 453 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~-----~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 527 (892)
+.++.|+|.+|.+... +..+.....|. .+++..|.+. ..+..+..+++|+.|+|++|.+. .+|..+..+++|
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL 249 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence 4567777777777653 22221111222 2222233333 34566777888888888888887 566666678888
Q ss_pred cEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccc
Q 044158 528 DAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILAN 607 (892)
Q Consensus 528 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 607 (892)
+.|+|++|.++ .+|..|+.+++|++|+|++|.|+ .+|..|..+++|++|+|++|.++ .+|..|+.+++|++|+|++
T Consensus 250 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 250 TRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT--SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp SCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS--SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC--ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 88888888887 67777888888888888888887 45777888888888888888886 6677788888888888888
Q ss_pred ccccccCCccccCCCC-CCEEEcCCCcCCCCCCccc
Q 044158 608 NNFEGEVPLRLCQLQK-LRLLDLSHNNFSGQIPPCL 642 (892)
Q Consensus 608 n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~g~~p~~~ 642 (892)
|++++.+|..+..+.. +..++|++|.++|.+|..+
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence 8888777776654322 2236677777777666543
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=1.8e-16 Score=163.57 Aligned_cols=169 Identities=20% Similarity=0.264 Sum_probs=97.6
Q ss_pred CCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEe
Q 044158 404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLN 483 (892)
Q Consensus 404 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 483 (892)
.++..++++++.+++.. .+..+++|++|++++|.++ .++ . +..+++|++|++++|++++..+ +..+++|+.|+
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-G-MQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-T-GGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-H-HhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 34556666666665332 3556666666666666665 444 1 2345555555555555554332 44444555555
Q ss_pred ecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCC
Q 044158 484 LDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAG 563 (892)
Q Consensus 484 L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 563 (892)
+++| ++++. |. +.. ++|+.|++++|++++. ..+..+++|++|++++|++++
T Consensus 92 L~~N------------------------~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 92 VNRN------------------------RLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp CCSS------------------------CCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB
T ss_pred CCCC------------------------ccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC
Confidence 5554 44432 11 111 5555555555555542 246666777777777777765
Q ss_pred CcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEeccccccccc
Q 044158 564 RPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGE 613 (892)
Q Consensus 564 ~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 613 (892)
+ + .+..+++|++|++++|++++. ..+..+++|+.|++++|++.+.
T Consensus 143 ~--~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 143 I--V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp C--G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred C--h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 3 2 566677777777777777654 4566777777777777777644
No 123
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=3e-16 Score=168.35 Aligned_cols=284 Identities=12% Similarity=0.079 Sum_probs=176.0
Q ss_pred CCCccEEEccCCcCccccchhhhhc-CCCCCEEEccCCcCc--CCCCCCCCCCCCccEEEccCCcCCCCCchhhhhc---
Q 044158 329 QHHLEFVIISDVNMRGEFPSWLLEN-NTNLRSIILANNSLS--GPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKV--- 402 (892)
Q Consensus 329 ~~~L~~L~l~~~~~~~~~p~~~~~~-~~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~--- 402 (892)
..+++.|.++++--...+ .. +.. +++|+.|+|++|.+. .... ..++.+..+.+..| .+|...|..
T Consensus 24 ~~~l~~L~l~g~i~~~~~-~~-l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~----~I~~~aF~~~~~ 94 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDF-RH-LRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMAN----FVPAYAFSNVVN 94 (329)
T ss_dssp HHHCSEEEEEEEECHHHH-HH-HHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTT----EECTTTTEEEET
T ss_pred hCceeEEEEeccccHHHH-HH-HHHhhccCeEEecCcceeEEecCcc---cccccccccccccc----ccCHHHhccccc
Confidence 446777777653211111 12 233 777888888888776 2111 12222444555544 455666666
Q ss_pred -----CCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCc----ccccccccc
Q 044158 403 -----LPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNS----LQGQLFSKK 473 (892)
Q Consensus 403 -----l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~----l~~~~~~~~ 473 (892)
+++|+.+++.+ .++.+.+.+|.++++|+.+++.+|.+. .++...|.++.++..+....+. ........|
T Consensus 95 ~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 95 GVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp TEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred ccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhcccccccccc
Confidence 77888888877 777666677888888888888888777 6777777776666666655532 222233445
Q ss_pred cccCCCc-EEeecCccCcCCCCccc----ccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCC
Q 044158 474 INLTKLK-RLNLDGNHFIGGIPESL----SNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQL 548 (892)
Q Consensus 474 ~~l~~L~-~L~L~~n~~~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 548 (892)
.++..|+ .+.+.... .++..+ ....+++.+.+.++-...........+++|+.+++++|+++...+.+|.++
T Consensus 173 ~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~ 249 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK 249 (329)
T ss_dssp EESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC
T ss_pred ccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC
Confidence 5566665 44443321 122111 123445555555432111111111236788888888888876666778888
Q ss_pred CCCcEEeCCCCccCCCcccccccCCCCcc-EEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEE
Q 044158 549 DYLEILDLSKNNIAGRPLNGAFSKCSYLL-TLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLL 627 (892)
Q Consensus 549 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~-~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 627 (892)
.+|+.+++.+| ++.+ -+.+|.+|++|+ .+++.+ .++.+.+..|.+|++|+.+++++|+++...+..|.++++|+.+
T Consensus 250 ~~L~~l~l~~n-i~~I-~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 250 KYLLKIKLPHN-LKTI-GQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp TTCCEEECCTT-CCEE-CTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEE
T ss_pred CCCCEEECCcc-ccee-hHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhh
Confidence 88888888877 6542 256788888888 888887 6665666788888888888888888887777788888888877
Q ss_pred Ec
Q 044158 628 DL 629 (892)
Q Consensus 628 ~L 629 (892)
..
T Consensus 327 y~ 328 (329)
T 3sb4_A 327 YK 328 (329)
T ss_dssp EC
T ss_pred cc
Confidence 53
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=148.08 Aligned_cols=113 Identities=22% Similarity=0.363 Sum_probs=103.3
Q ss_pred ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158 699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778 (892)
Q Consensus 699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls 778 (892)
.++.|++++|.++ .+|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..|..|..+++|++|+++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 5888999999998 788899999999999999999999888999999999999999999999888899999999999999
Q ss_pred CCcccccCCccccccCCCCcccccCCCCCCCCCC
Q 044158 779 HNNLSGKIPERIAQFATFDEDSYEGNPFLCGPPL 812 (892)
Q Consensus 779 ~N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~l 812 (892)
+|++++..+..+..+..+....+.+||+.|+|.+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l 144 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred CCCCCeeChhhhhcCccccEEEeCCCCeecCCcC
Confidence 9999987776677788888899999999998864
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.61 E-value=2e-15 Score=144.47 Aligned_cols=133 Identities=20% Similarity=0.186 Sum_probs=79.3
Q ss_pred CCCcEEeecCccCc-CCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEe
Q 044158 477 TKLKRLNLDGNHFI-GGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILD 555 (892)
Q Consensus 477 ~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 555 (892)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45555555555554 44555555556666666666665543 4455555555555555555554555555566666666
Q ss_pred CCCCccCCCcccccccCCCCccEEEccCCccCccCC---hhhhcCCCCCEEeccccccc
Q 044158 556 LSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP---NWMGRLSQLRYLILANNNFE 611 (892)
Q Consensus 556 Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~L~~n~l~ 611 (892)
+++|.+++++.+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 666666654333556666667777777776665444 35666666666666666665
No 126
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=8.2e-16 Score=164.92 Aligned_cols=279 Identities=15% Similarity=0.101 Sum_probs=185.2
Q ss_pred CCCCCEEEccCCcCcCCCCCCCCC-CCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccC------
Q 044158 354 NTNLRSIILANNSLSGPFRLPTRS-RKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGD------ 426 (892)
Q Consensus 354 ~~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~------ 426 (892)
..++++|.++++--... ...+.. +++|+.|||++|++. ...... ..++.++.+.+..|.+ .+.+|.+
T Consensus 24 ~~~l~~L~l~g~i~~~~-~~~l~~~l~~L~~LdLs~n~i~-~~~~~~-~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~ 97 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAED-FRHLRDEFPSLKVLDISNAEIK-MYSGKA-GTYPNGKFYIYMANFV---PAYAFSNVVNGVT 97 (329)
T ss_dssp HHHCSEEEEEEEECHHH-HHHHHHSCTTCCEEEEEEEEEC-CEEESS-SSSGGGCCEEECTTEE---CTTTTEEEETTEE
T ss_pred hCceeEEEEeccccHHH-HHHHHHhhccCeEEecCcceeE-EecCcc-cccccccccccccccc---CHHHhcccccccc
Confidence 45678888876421100 001112 677888888888876 111111 1123344555555532 3445666
Q ss_pred --CCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCcc----CcCCCCcccccC
Q 044158 427 --MNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNH----FIGGIPESLSNC 500 (892)
Q Consensus 427 --l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~----~~~~~~~~~~~l 500 (892)
+++|+.++|.+ .++ .|++..|.+|++|+.+++++|.+..+.+..|.++.++..+.+..+. ........|.++
T Consensus 98 ~g~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EECTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred cccCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 88888888888 777 7888888888888888888888887777888887777777665532 122334556677
Q ss_pred CCCc-EEEccCCcCCCCccccc----cCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCC
Q 044158 501 SSLQ-GLYISDNDISGSIPTWM----GNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSY 575 (892)
Q Consensus 501 ~~L~-~L~L~~n~l~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 575 (892)
..|+ .+.+.... .++..+ ....+++.+.+.++-...........+++|+.++|++|+++.++ +.+|.+|++
T Consensus 176 ~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~-~~aF~~~~~ 251 (329)
T 3sb4_A 176 EPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP-DFTFAQKKY 251 (329)
T ss_dssp CCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC-TTTTTTCTT
T ss_pred cccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec-HhhhhCCCC
Confidence 7777 45554321 222211 12345556665544222111111124789999999999998743 568999999
Q ss_pred ccEEEccCCccCccCChhhhcCCCCC-EEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCCc
Q 044158 576 LLTLDLCNNRLNGNIPNWMGRLSQLR-YLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTS 646 (892)
Q Consensus 576 L~~L~L~~n~l~~~~p~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~ 646 (892)
|+.+++.+| ++...+.+|.++++|+ .+++.+ .++...+..|.++++|+.+++++|+++..-+..|.++.
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGV 321 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTC
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCc
Confidence 999999998 7766677999999999 999998 77767788999999999999999999844444665543
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=2.3e-15 Score=140.82 Aligned_cols=129 Identities=22% Similarity=0.201 Sum_probs=79.7
Q ss_pred cCCCcEEeecCccCc-CCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEE
Q 044158 476 LTKLKRLNLDGNHFI-GGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEIL 554 (892)
Q Consensus 476 l~~L~~L~L~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 554 (892)
.++|+.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 355666666666665 55666666667777777777766654 455566666666666666665556555556666666
Q ss_pred eCCCCccCCCcccccccCCCCccEEEccCCccCccCC---hhhhcCCCCCEEecc
Q 044158 555 DLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIP---NWMGRLSQLRYLILA 606 (892)
Q Consensus 555 ~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~L~L~ 606 (892)
++++|++++.+.+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666666653333556666666666666666665444 355566666666654
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=4.4e-15 Score=142.11 Aligned_cols=86 Identities=23% Similarity=0.229 Sum_probs=65.4
Q ss_pred CccceeeccCccccccCCccccccCCCCEEEccCccCCccc-cccccCCCCCCEEECCCCcCcccCC---ccccCCCCCC
Q 044158 698 ESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTI-PVTFSNLRQVESLDLSYNNLTGKIP---PRLVELNALA 773 (892)
Q Consensus 698 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~LdLs~N~l~g~ip---~~l~~l~~L~ 773 (892)
++|+.|++++|.+++.+|..+..+++|+.|+|++|++++.. +..++.+++|+.|++++|++++..+ ..+..+++|+
T Consensus 71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~ 150 (168)
T 2ell_A 71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT 150 (168)
T ss_dssp SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence 35667777777777667777777888888888888887643 2677888888888888888886555 4778888888
Q ss_pred EEEccCCccc
Q 044158 774 VFTVAHNNLS 783 (892)
Q Consensus 774 ~l~ls~N~l~ 783 (892)
+||+++|.+.
T Consensus 151 ~L~l~~n~~~ 160 (168)
T 2ell_A 151 YLDGYDREDQ 160 (168)
T ss_dssp EETTEETTSC
T ss_pred EecCCCCChh
Confidence 8888888775
No 129
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=3.6e-14 Score=155.17 Aligned_cols=265 Identities=12% Similarity=0.072 Sum_probs=170.7
Q ss_pred CCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEE
Q 044158 354 NTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYL 433 (892)
Q Consensus 354 ~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 433 (892)
+..++.+.+.++ ++......|..+ +|+.+.+..+ ++ .|+...|.. .+|+.+.+.. .+....+.+|.++++|+.+
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCee
Confidence 455555555442 333344455553 5777776655 44 566666554 4677777765 5555566677777777777
Q ss_pred ECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcC
Q 044158 434 DLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDI 513 (892)
Q Consensus 434 ~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l 513 (892)
++.+|+++ .++...|. +.+|+.+.+..+ ++.+....|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+
T Consensus 186 ~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i 259 (401)
T 4fdw_A 186 DLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGV 259 (401)
T ss_dssp ECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTC
T ss_pred ecCCCcce-EechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCc
Confidence 77777777 67777665 567777777643 66566667777777777777764 44344455666 677777773 445
Q ss_pred CCCccccccCCCCCcEEECCCCccc-----CCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCc
Q 044158 514 SGSIPTWMGNISFLDAIIMPDNHLE-----GPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNG 588 (892)
Q Consensus 514 ~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~ 588 (892)
+.....+|.+|++|+.+.+.+|.+. ...+.+|.++++|+.+++.+ .++.+. ..+|.+|++|+.+++..+ ++.
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~-~~aF~~c~~L~~l~lp~~-l~~ 336 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILG-QGLLGGNRKVTQLTIPAN-VTQ 336 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEEC-TTTTTTCCSCCEEEECTT-CCE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEh-hhhhcCCCCccEEEECcc-ccE
Confidence 5455667777777777777666553 34455677777888888773 455422 457777888888888554 554
Q ss_pred cCChhhhcCCCCCEEecccccccccCCccccCCC-CCCEEEcCCCcC
Q 044158 589 NIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQ-KLRLLDLSHNNF 634 (892)
Q Consensus 589 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l 634 (892)
.-+.+|.++ +|+.+++++|......+..|..++ .++.|.+..+.+
T Consensus 337 I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 337 INFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 555677777 788888888777655556666663 567777665543
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.1e-14 Score=142.38 Aligned_cols=89 Identities=25% Similarity=0.284 Sum_probs=74.7
Q ss_pred ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158 699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778 (892)
Q Consensus 699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls 778 (892)
+|+.|+|++|.+++..|..|..+++|++|+|++|++++..|..|.++++|+.|+|++|+|++..+..+..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 46667777777776667778888899999999999998888889999999999999999997766678889999999999
Q ss_pred CCcccccCC
Q 044158 779 HNNLSGKIP 787 (892)
Q Consensus 779 ~N~l~g~ip 787 (892)
+|++.+...
T Consensus 135 ~N~~~C~c~ 143 (193)
T 2wfh_A 135 ANPLYCDCN 143 (193)
T ss_dssp SSCEECSGG
T ss_pred CCCeecCCc
Confidence 999987544
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=4e-15 Score=139.22 Aligned_cols=128 Identities=21% Similarity=0.242 Sum_probs=91.9
Q ss_pred CCCCEEeccccccc-ccCCccccCCCCCCEEEcCCCcCCCCCCccccCCcccccccccccccccccccccccccCCCCCC
Q 044158 598 SQLRYLILANNNFE-GEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNTSLHREEGYYDLIPTYRNEYDIVSYNVGPSMG 676 (892)
Q Consensus 598 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (892)
++|+.|++++|.++ +.+|..+..+++|++|++++|++++. ..+.
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~--------------------------------- 61 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLP--------------------------------- 61 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCC---------------------------------
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhh---------------------------------
Confidence 45666666666666 55666666667777777777766532 1111
Q ss_pred CcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCCEEEccCccCCcc-ccccccCCCCCCEEECCC
Q 044158 677 EKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGT-IPVTFSNLRQVESLDLSY 755 (892)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~LdLs~ 755 (892)
.+++|+.|++++|.+++.+|..++.+++|+.|++++|++++. .|..++.+++|+.|++++
T Consensus 62 -------------------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 62 -------------------KLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp -------------------CCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred -------------------cCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence 133577777777777776777777788888888888888864 447788888888888888
Q ss_pred CcCcccCC---ccccCCCCCCEEEccC
Q 044158 756 NNLTGKIP---PRLVELNALAVFTVAH 779 (892)
Q Consensus 756 N~l~g~ip---~~l~~l~~L~~l~ls~ 779 (892)
|++++..+ ..+..+++|+.||+++
T Consensus 123 N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 123 CEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CcccchHHHHHHHHHHCCCcccccCCC
Confidence 88887665 5788888888888763
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=1.9e-14 Score=139.05 Aligned_cols=90 Identities=22% Similarity=0.240 Sum_probs=71.9
Q ss_pred ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158 699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778 (892)
Q Consensus 699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls 778 (892)
+|+.|++++|.+++..+..++.+++|++|+|++|++++..+..++.+++|+.|++++|++++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 46666666777665555567788888888888888887777778888899999999999986666667888889999999
Q ss_pred CCcccccCCc
Q 044158 779 HNNLSGKIPE 788 (892)
Q Consensus 779 ~N~l~g~ip~ 788 (892)
+|+++|.+|.
T Consensus 133 ~N~~~~~~~~ 142 (177)
T 2o6r_A 133 TNPWDCSCPR 142 (177)
T ss_dssp SSCBCCCHHH
T ss_pred CCCeeccCcc
Confidence 9999887764
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=1.6e-13 Score=150.92 Aligned_cols=102 Identities=15% Similarity=0.083 Sum_probs=58.0
Q ss_pred hhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCC
Q 044158 399 IGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTK 478 (892)
Q Consensus 399 ~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 478 (892)
.+..+.+|+.+.+..+ +..+...+|.++.+|+.+++.++ ++ .|+...|.+|.+|+.+.+..+ ++.+...+|.+|++
T Consensus 292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 367 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-EIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN 367 (394)
T ss_dssp TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT
T ss_pred cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-EEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC
Confidence 3334555665555443 33344455666666666666533 44 566666666666666666554 55455566666777
Q ss_pred CcEEeecCccCcCCCCcccccCCCCcEE
Q 044158 479 LKRLNLDGNHFIGGIPESLSNCSSLQGL 506 (892)
Q Consensus 479 L~~L~L~~n~~~~~~~~~~~~l~~L~~L 506 (892)
|+.+++..+- . .+..+|.+|++|+.+
T Consensus 368 L~~i~lp~~~-~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 368 LKKVELPKRL-E-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred CCEEEECCCC-E-EhhheecCCCCCcEE
Confidence 7777765542 2 234456667666653
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=6.5e-14 Score=153.11 Aligned_cols=249 Identities=11% Similarity=0.069 Sum_probs=155.2
Q ss_pred hhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCC
Q 044158 348 SWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDM 427 (892)
Q Consensus 348 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l 427 (892)
...|.++ +|+.+.+..+ ++......|..+ +|+.+.+.. .++ .++...|..+++|+.+++..|.++.....+|. .
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~ 202 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-Y 202 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-T
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-e
Confidence 3334443 4666665544 444444444443 466666654 343 45555555566666666666666654445554 4
Q ss_pred CCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEE
Q 044158 428 NSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLY 507 (892)
Q Consensus 428 ~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~ 507 (892)
.+|+.+.+..+ ++ .|+...|.++++|+.+++..+ ++.+....|.+ .+|+.+.+. +.++...+.+|.+|++|+.++
T Consensus 203 ~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~ 277 (401)
T 4fdw_A 203 AGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVT 277 (401)
T ss_dssp CCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEE
T ss_pred cccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEE
Confidence 56666666633 44 566666666666666666653 44444555555 567777773 334444456677777777777
Q ss_pred ccCCcCC-----CCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEcc
Q 044158 508 ISDNDIS-----GSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLC 582 (892)
Q Consensus 508 L~~n~l~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~ 582 (892)
+.+|.+. ...+.+|.+|++|+.+.+.+ .++.....+|.++.+|+.++|..+ ++.+ -..+|.+| +|+.+++.
T Consensus 278 l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I-~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 278 TYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI-NFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp EESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE-CTTSSSSS-CCCEEEEC
T ss_pred eCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE-cHHhCCCC-CCCEEEEc
Confidence 7766554 34456777777888888773 466566667888888888888554 5442 24678888 88888888
Q ss_pred CCccCccCChhhhcCC-CCCEEeccccccc
Q 044158 583 NNRLNGNIPNWMGRLS-QLRYLILANNNFE 611 (892)
Q Consensus 583 ~n~l~~~~p~~~~~l~-~L~~L~L~~n~l~ 611 (892)
+|.+....+..|.+++ +++.|++..+.+.
T Consensus 354 ~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 354 GTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 8887766666777774 7888888877654
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.53 E-value=2.5e-13 Score=149.43 Aligned_cols=146 Identities=14% Similarity=0.068 Sum_probs=98.1
Q ss_pred CCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCc
Q 044158 374 PTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCF 453 (892)
Q Consensus 374 ~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~ 453 (892)
.+..+..++.+.+..+.. .+....+..+..++.+......+ ....|..+.+|+.+.+.++ ++ .|+...|.++.
T Consensus 248 ~f~~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~ 320 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCT 320 (394)
T ss_dssp TTTTCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCT
T ss_pred cccccccceeEEcCCCcc--eeeccccccccccceeccCceee---ccccccccccccccccccc-cc-eechhhhcCCC
Confidence 334444555555544422 33444445566777776665543 2346778888888888765 55 77778888888
Q ss_pred cCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEE
Q 044158 454 NLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAI 530 (892)
Q Consensus 454 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 530 (892)
+|+.+++..+ ++.+...+|.+|++|+.+.+..+ ++.....+|.+|++|+.+++..+ +. .+..+|.++++|+.+
T Consensus 321 ~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 321 SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 8888888644 66666778888888888888766 55455678888888888888754 22 334577788877764
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=4.9e-16 Score=153.20 Aligned_cols=153 Identities=22% Similarity=0.298 Sum_probs=110.1
Q ss_pred CCCCccEEEccCCccCccCCh------hhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcCCCCCCccccCC
Q 044158 572 KCSYLLTLDLCNNRLNGNIPN------WMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNFSGQIPPCLDNT 645 (892)
Q Consensus 572 ~~~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~g~~p~~~~~~ 645 (892)
....++.++++.+.+.+..|. .+..+++|++|++++|++++ +| .+..+++|++|++++|+++ .+|..+..
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~- 91 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV- 91 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc-
Confidence 344555555555555555554 77778888888888888875 56 7777888888888888876 45432221
Q ss_pred cccccccccccccccccccccccccCCCCCCCcceeEeeecccccccCCCCcCccceeeccCccccccCCccccccCCCC
Q 044158 646 SLHREEGYYDLIPTYRNEYDIVSYNVGPSMGEKETIDFTTKERSYTYKGQPLESIHGLDLSCNKLIGEIPSRIGELIRIH 725 (892)
Q Consensus 646 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 725 (892)
+++|+.|++++|++++ +| .++.+++|+
T Consensus 92 ---------------------------------------------------~~~L~~L~L~~N~l~~-l~-~~~~l~~L~ 118 (198)
T 1ds9_A 92 ---------------------------------------------------ADTLEELWISYNQIAS-LS-GIEKLVNLR 118 (198)
T ss_dssp ---------------------------------------------------HHHCSEEEEEEEECCC-HH-HHHHHHHSS
T ss_pred ---------------------------------------------------CCcCCEEECcCCcCCc-CC-ccccCCCCC
Confidence 2357788888888875 45 688888899
Q ss_pred EEEccCccCCcccc-ccccCCCCCCEEECCCCcCcccCCcc----------ccCCCCCCEEEccCCccc
Q 044158 726 TLNLSRNNLTGTIP-VTFSNLRQVESLDLSYNNLTGKIPPR----------LVELNALAVFTVAHNNLS 783 (892)
Q Consensus 726 ~L~Ls~N~l~~~~p-~~~~~l~~L~~LdLs~N~l~g~ip~~----------l~~l~~L~~l~ls~N~l~ 783 (892)
.|++++|++++..+ ..+..+++|+.|++++|++++.+|.. +..+++|+.|| +|.++
T Consensus 119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 99999998885433 47888889999999999888776653 77888888887 56554
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.49 E-value=1.8e-13 Score=132.12 Aligned_cols=130 Identities=25% Similarity=0.273 Sum_probs=72.2
Q ss_pred cEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEcc
Q 044158 382 IALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLS 461 (892)
Q Consensus 382 ~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~ 461 (892)
+.+++++++++ .+|..+ .++|++|++++|++.+..+..|..+++|++|++++|+++ .++...+..+++|++|+++
T Consensus 10 ~~l~~~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TEEECCSSCCS-SCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CEEEecCCCCc-cCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECC
Confidence 45555555555 455433 356666666666666555555666666666666666665 4554444455555555555
Q ss_pred CCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCC
Q 044158 462 NNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGS 516 (892)
Q Consensus 462 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 516 (892)
+|++++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+.
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 5555554444455555555555555555544333444555555555555555443
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=1.9e-13 Score=130.51 Aligned_cols=109 Identities=24% Similarity=0.278 Sum_probs=72.2
Q ss_pred cceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccC
Q 044158 700 IHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAH 779 (892)
Q Consensus 700 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~ 779 (892)
.+.+++++|.++ .+|..+. ++|+.|+|++|+|++..|..|+++++|+.|||++|+|++..|..+..+++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 345677777766 3555543 5667777777777766666677777777777777777765555566677777777777
Q ss_pred CcccccCCccccccCCCCcccccCCCCCCCCC
Q 044158 780 NNLSGKIPERIAQFATFDEDSYEGNPFLCGPP 811 (892)
Q Consensus 780 N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~ 811 (892)
|++++..|..+..+..+....+.+||+.|.|+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 77776555545566666666677777766653
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=2e-13 Score=131.52 Aligned_cols=110 Identities=18% Similarity=0.144 Sum_probs=48.1
Q ss_pred cccCCCcEEeecCccCcCCCCcccccC-CCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCc
Q 044158 474 INLTKLKRLNLDGNHFIGGIPESLSNC-SSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLE 552 (892)
Q Consensus 474 ~~l~~L~~L~L~~n~~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 552 (892)
..+++|+.|++++|.+.. +|. +..+ ++|++|++++|.+++. ..+..+++|+.|++++|.+++..+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 344555555555555552 232 2222 2555555555555432 3344444444444444444433222234444444
Q ss_pred EEeCCCCccCCCcccccccCCCCccEEEccCCccC
Q 044158 553 ILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLN 587 (892)
Q Consensus 553 ~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~ 587 (892)
+|++++|+++.++....+..+++|+.|++++|.++
T Consensus 92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 44444444432111113444444444444444443
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.43 E-value=4.6e-13 Score=127.86 Aligned_cols=90 Identities=22% Similarity=0.227 Sum_probs=84.3
Q ss_pred ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158 699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778 (892)
Q Consensus 699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls 778 (892)
.++.|+|++|++++..|..|..+++|++|+|++|+|++..|..|..+++|+.|+|++|+|++..|..+..+++|++|+++
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 110 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLL 110 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEeC
Confidence 58889999999999889999999999999999999998888889999999999999999998877789999999999999
Q ss_pred CCcccccCCc
Q 044158 779 HNNLSGKIPE 788 (892)
Q Consensus 779 ~N~l~g~ip~ 788 (892)
+|++++..+.
T Consensus 111 ~N~~~c~c~~ 120 (170)
T 3g39_A 111 NNPWDCACSD 120 (170)
T ss_dssp SSCBCTTBGG
T ss_pred CCCCCCCchh
Confidence 9999988764
No 141
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=2.2e-13 Score=131.25 Aligned_cols=135 Identities=21% Similarity=0.238 Sum_probs=114.6
Q ss_pred cccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCC
Q 044158 495 ESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCS 574 (892)
Q Consensus 495 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~ 574 (892)
..+.++.+|++|++++|+++.. |......++|+.|++++|.+++. ..+..+++|++|++++|+++++ .+..+..++
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~ 88 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRI-GEGLDQALP 88 (176)
T ss_dssp CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEE-CSCHHHHCT
T ss_pred HhcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccccc-CcchhhcCC
Confidence 3467889999999999999954 54333344999999999999875 6789999999999999999973 245568999
Q ss_pred CccEEEccCCccCccCCh--hhhcCCCCCEEecccccccccCCcc----ccCCCCCCEEEcCCCcCC
Q 044158 575 YLLTLDLCNNRLNGNIPN--WMGRLSQLRYLILANNNFEGEVPLR----LCQLQKLRLLDLSHNNFS 635 (892)
Q Consensus 575 ~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l~~L~~L~Ls~N~l~ 635 (892)
+|++|++++|+++ .+|. .+..+++|+.|++++|+++ .+|.. +..+++|+.||+++|...
T Consensus 89 ~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 89 DLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 9999999999996 4565 7899999999999999998 45664 889999999999999865
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.42 E-value=5.1e-13 Score=127.95 Aligned_cols=107 Identities=20% Similarity=0.243 Sum_probs=64.1
Q ss_pred ceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCC
Q 044158 701 HGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHN 780 (892)
Q Consensus 701 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N 780 (892)
+.+++++|+++ .+|..+. ++|+.|+|++|+|++.+|..|+++++|+.|+|++|+|++..+..+..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34666666664 4555443 55666666666666666666666666666666666666544444566666666666666
Q ss_pred cccccCCccccccCCCCcccccCCCCCCCC
Q 044158 781 NLSGKIPERIAQFATFDEDSYEGNPFLCGP 810 (892)
Q Consensus 781 ~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~ 810 (892)
++++..|..+..+..+....+.+||+.|.|
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 666554444455555556666666666654
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.42 E-value=1.9e-15 Score=149.02 Aligned_cols=132 Identities=25% Similarity=0.258 Sum_probs=91.1
Q ss_pred ccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCC
Q 044158 496 SLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSY 575 (892)
Q Consensus 496 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~ 575 (892)
.+..+++|++|++++|++++ +| .+..+++|+.|++++|.++ .+|..+..+++|++|++++|+++++ | .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l--~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL--S-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH--H-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC--C-ccccCCC
Confidence 55556666666666666554 33 5555566666666666665 4555566667788888888888763 3 5777788
Q ss_pred ccEEEccCCccCccCC-hhhhcCCCCCEEecccccccccCCcc----------ccCCCCCCEEEcCCCcCC
Q 044158 576 LLTLDLCNNRLNGNIP-NWMGRLSQLRYLILANNNFEGEVPLR----------LCQLQKLRLLDLSHNNFS 635 (892)
Q Consensus 576 L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~~----------~~~l~~L~~L~Ls~N~l~ 635 (892)
|++|++++|++++..+ ..+..+++|++|++++|++.+..|.. +..+++|+.|| +|.++
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 8888888888875332 46778888888888888887765542 67888888887 66665
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1.4e-12 Score=124.98 Aligned_cols=90 Identities=22% Similarity=0.265 Sum_probs=82.9
Q ss_pred ccceeeccCccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEcc
Q 044158 699 SIHGLDLSCNKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVA 778 (892)
Q Consensus 699 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls 778 (892)
.|+.|+|++|++++..|..|+.+++|+.|+|++|+|++..+..|+++++|+.|||++|+|++..|..+..+++|++|+++
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~ 113 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLY 113 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEeC
Confidence 58899999999999889999999999999999999998777778999999999999999997777779999999999999
Q ss_pred CCcccccCCc
Q 044158 779 HNNLSGKIPE 788 (892)
Q Consensus 779 ~N~l~g~ip~ 788 (892)
+|++.+..+.
T Consensus 114 ~N~~~c~~~~ 123 (174)
T 2r9u_A 114 NNPWDCECRD 123 (174)
T ss_dssp SSCBCTTBGG
T ss_pred CCCccccccc
Confidence 9999976653
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.26 E-value=9.6e-12 Score=134.40 Aligned_cols=107 Identities=16% Similarity=0.208 Sum_probs=74.7
Q ss_pred eeeccCc-cccccCCccccccCCCCEEEccC-ccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccC
Q 044158 702 GLDLSCN-KLIGEIPSRIGELIRIHTLNLSR-NNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAH 779 (892)
Q Consensus 702 ~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~ 779 (892)
.++++++ +++ .+|. ++.+++|+.|+|++ |+|++..|..|+++++|+.|||++|+|++.+|..|.++++|+.|||++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 3566766 676 4666 77777777777775 777776667777777777777777777777777777777777777777
Q ss_pred CcccccCCccccccCCCCcccccCCCCCCCCC
Q 044158 780 NNLSGKIPERIAQFATFDEDSYEGNPFLCGPP 811 (892)
Q Consensus 780 N~l~g~ip~~~~~~~~~~~~~~~gN~~lc~~~ 811 (892)
|+|++..|..+..+. +....+.+|++.|.|.
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 777765554333332 6666777777777664
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.24 E-value=2.5e-10 Score=125.45 Aligned_cols=258 Identities=12% Similarity=0.092 Sum_probs=126.1
Q ss_pred hhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcCCCCcEEECcCCcCCccCchhccCCCCC
Q 044158 351 LENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVLPNLGFLTISFNAFNGSIPSSFGDMNSL 430 (892)
Q Consensus 351 ~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 430 (892)
+..+.+|+.+.+..+ +.......+..+..|+.+.+..+ ++ .+....|. ...|+.+.+..+-. .....+|..+.++
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~~~-~i~~~af~~c~~l 207 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAKVT-RIGTNAFSECFAL 207 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTTCC-EECTTTTTTCTTC
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCccc-ccccchhhhcccc
Confidence 444555555555432 22223334444555555555433 22 34444443 34566666554322 2334455666666
Q ss_pred cEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccC
Q 044158 431 IYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISD 510 (892)
Q Consensus 431 ~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~ 510 (892)
+......+... .+...++........-. ..+.....+..+.+... +......+|.+|..|+.+.+.+
T Consensus 208 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~ 274 (394)
T 4gt6_A 208 STITSDSESYP-AIDNVLYEKSANGDYAL-----------IRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPD 274 (394)
T ss_dssp CEEEECCSSSC-BSSSCEEEECTTSCEEE-----------EECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCT
T ss_pred ceecccccccc-cccceeecccccccccc-----------cccccccccceEEcCCc-ceEcccceeeecccccEEeccc
Confidence 66555444332 22211111111000000 01111222333333221 2222334566666777766654
Q ss_pred CcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccC
Q 044158 511 NDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNI 590 (892)
Q Consensus 511 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 590 (892)
+... ....+|.+++.|+.+.+. +.++.....+|.++.+|+.+++..+ ++.+. ..+|.+|.+|+.+.+..+ ++..-
T Consensus 275 ~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~-~~aF~~C~~L~~i~ip~s-v~~I~ 349 (394)
T 4gt6_A 275 SVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQIL-DDAFAGCEQLERIAIPSS-VTKIP 349 (394)
T ss_dssp TCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCEEEECTT-CCBCC
T ss_pred ccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEeh-HhHhhCCCCCCEEEECcc-cCEEh
Confidence 4322 344556667777777775 3344444556777777888877654 43321 457888888888888654 55444
Q ss_pred ChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCCCcC
Q 044158 591 PNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSHNNF 634 (892)
Q Consensus 591 p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 634 (892)
..+|.+|++|+.+++.++.... ..+..+.+|+.+.+..|.+
T Consensus 350 ~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 350 ESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp GGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred HhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 5678888888888888776542 3566777888887776654
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.20 E-value=7.4e-10 Score=121.64 Aligned_cols=263 Identities=11% Similarity=0.102 Sum_probs=139.6
Q ss_pred cchhhhhcCC-CCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCc---CCCCCchhhhhcCCCCcEEECcCCcCCccCc
Q 044158 346 FPSWLLENNT-NLRSIILANNSLSGPFRLPTRSRKNIIALDISYNK---LQGHIPVEIGKVLPNLGFLTISFNAFNGSIP 421 (892)
Q Consensus 346 ~p~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~---l~~~i~~~~~~~l~~L~~L~L~~n~~~~~~p 421 (892)
++...|.++. .|+++.+..+ ++.....+|.++.+|+.+.+..|. ++ .|....|..+.+|+.+.+..+ ++....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehh
Confidence 4444455653 4777777653 555556667777777777776553 43 555666666677777666544 343455
Q ss_pred hhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCC
Q 044158 422 SSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCS 501 (892)
Q Consensus 422 ~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~ 501 (892)
.+|..+.+|+.+.+..+ +. .++...|.++.+|+.+.+..+ ++.+....|.. ..|+.+.+..+-. .....+|..+.
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c~ 205 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSECF 205 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTCT
T ss_pred hhhhhhcccccccccce-ee-eecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhcc
Confidence 56777777777777644 33 566666667777777777654 33333444433 4677777655432 23345666677
Q ss_pred CCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEc
Q 044158 502 SLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDL 581 (892)
Q Consensus 502 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L 581 (892)
+++.............-..+......... ...+.....+..+.+... ++. .-..+|.+|..|+.+.+
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~ip~~-v~~-i~~~aF~~c~~L~~i~l 272 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDYA-----------LIRYPSQREDPAFKIPNG-VAR-IETHAFDSCAYLASVKM 272 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCEE-----------EEECCTTCCCSEEECCTT-EEE-ECTTTTTTCSSCCEEEC
T ss_pred ccceecccccccccccceeeccccccccc-----------ccccccccccceEEcCCc-ceE-cccceeeecccccEEec
Confidence 77766655443321110001000000000 000111122333333211 111 11245666777777776
Q ss_pred cCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCC
Q 044158 582 CNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSH 631 (892)
Q Consensus 582 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 631 (892)
..+... .....|.++++|+.+.+. +.++......|.++.+|+.++|..
T Consensus 273 p~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~ 320 (394)
T 4gt6_A 273 PDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE 320 (394)
T ss_dssp CTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT
T ss_pred ccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCC
Confidence 554332 344566667777777775 334434455666777777776643
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=3.9e-11 Score=129.59 Aligned_cols=88 Identities=18% Similarity=0.195 Sum_probs=80.3
Q ss_pred ccceeeccC-ccccccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEc
Q 044158 699 SIHGLDLSC-NKLIGEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTV 777 (892)
Q Consensus 699 ~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~l 777 (892)
+|+.|+|++ |.|++..|..|+.+++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+..++ |+.|++
T Consensus 32 ~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l 110 (347)
T 2ifg_A 32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVL 110 (347)
T ss_dssp CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEEC
T ss_pred CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEe
Confidence 689999996 999988888999999999999999999999999999999999999999999977777777666 999999
Q ss_pred cCCcccccCC
Q 044158 778 AHNNLSGKIP 787 (892)
Q Consensus 778 s~N~l~g~ip 787 (892)
++|++.+...
T Consensus 111 ~~N~~~c~c~ 120 (347)
T 2ifg_A 111 SGNPLHCSCA 120 (347)
T ss_dssp CSSCCCCCGG
T ss_pred eCCCccCCCc
Confidence 9999987544
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.18 E-value=1.3e-12 Score=141.49 Aligned_cols=188 Identities=17% Similarity=0.143 Sum_probs=91.3
Q ss_pred CCCcEEECcCCcCccccchhHh----hcCccCcEEEccCCcccccccccc-cccCCCcEEeecCccCcCCCCccc-----
Q 044158 428 NSLIYLDLSNNQLTGEIPEHLA----MGCFNLEYLLLSNNSLQGQLFSKK-INLTKLKRLNLDGNHFIGGIPESL----- 497 (892)
Q Consensus 428 ~~L~~L~L~~n~l~~~i~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~~~~----- 497 (892)
+.|+.|++++|.++..-...+. ....+|++|+|++|.++......+ ..+++|+.|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 4677777777777632222221 122466666666666654322222 223455555555555543222222
Q ss_pred ccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCCcEEeCCCCccCCC---cccccccCCC
Q 044158 498 SNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGR---PLNGAFSKCS 574 (892)
Q Consensus 498 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~---~~~~~~~~~~ 574 (892)
...++|++|+|++|.++..... .++..+...++|++|+|++|.++.. .+...+..++
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~--------------------~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~ 211 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVA--------------------VLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHH--------------------HHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCS
T ss_pred hcCCccceeeCCCCCCChHHHH--------------------HHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCC
Confidence 1234444444444444321000 1223334555666666666665431 1233455566
Q ss_pred CccEEEccCCccCcc----CChhhhcCCCCCEEecccccccccCCccccCC---C--CCCEEE--cCCCcCC
Q 044158 575 YLLTLDLCNNRLNGN----IPNWMGRLSQLRYLILANNNFEGEVPLRLCQL---Q--KLRLLD--LSHNNFS 635 (892)
Q Consensus 575 ~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~--~L~~L~--Ls~N~l~ 635 (892)
+|++|+|++|.+++. ++..+...++|++|+|++|.++......+..+ . .|+.+. +..|.++
T Consensus 212 ~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp CCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred CcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 677777777776643 23344456777777777777765444333332 1 155555 5555443
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=2.2e-12 Score=139.64 Aligned_cols=113 Identities=18% Similarity=0.132 Sum_probs=70.1
Q ss_pred CCCCcEEECcCCcCCccCchhcc-----CCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccccccccc----
Q 044158 403 LPNLGFLTISFNAFNGSIPSSFG-----DMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQGQLFSKK---- 473 (892)
Q Consensus 403 l~~L~~L~L~~n~~~~~~p~~~~-----~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---- 473 (892)
.+.|+.|++++|.++......+. ..++|++|+|++|.+++.....+...+++|+.|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 35666777777766543333322 225777777777777644344444455677778888777765443333
Q ss_pred -cccCCCcEEeecCccCcCC----CCcccccCCCCcEEEccCCcCCC
Q 044158 474 -INLTKLKRLNLDGNHFIGG----IPESLSNCSSLQGLYISDNDISG 515 (892)
Q Consensus 474 -~~l~~L~~L~L~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~ 515 (892)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~ 197 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGD 197 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCc
Confidence 2356788888888877542 23444667778888888777653
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.93 E-value=4.3e-08 Score=106.98 Aligned_cols=292 Identities=11% Similarity=0.044 Sum_probs=190.5
Q ss_pred ccccCCCCccEEEccCCcCccccchhhhhcCCCCCEEEccCCcCcCCCCCCCCCCCCccEEEccCCcCCCCCchhhhhcC
Q 044158 324 KFLYHQHHLEFVIISDVNMRGEFPSWLLENNTNLRSIILANNSLSGPFRLPTRSRKNIIALDISYNKLQGHIPVEIGKVL 403 (892)
Q Consensus 324 ~~l~~~~~L~~L~l~~~~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~i~~~~~~~l 403 (892)
+|.....+|+.+.+.+. ...++...|.+|.+|+++.+..+ ++......|..+ +|+.+.+..+ ++ .+....|. .
T Consensus 40 ~~~~~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~-~ 112 (379)
T 4h09_A 40 PWYKDRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQ-G 112 (379)
T ss_dssp TTGGGGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTT-T
T ss_pred cccccccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceec-c
Confidence 34445566777766532 23566666888888998888754 555556667666 5777777643 43 56666666 3
Q ss_pred CCCcEEECcCCcCCccCchhccCCCCCcEEECcCCcCccccchhHhhcCccCcEEEccCCcccc------------cccc
Q 044158 404 PNLGFLTISFNAFNGSIPSSFGDMNSLIYLDLSNNQLTGEIPEHLAMGCFNLEYLLLSNNSLQG------------QLFS 471 (892)
Q Consensus 404 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~i~~~~~~~~~~L~~L~L~~n~l~~------------~~~~ 471 (892)
.+|+.+.+..+ +.......|.++ +++.+.+..+ ++ .+....|..+..++...+..+.... ....
T Consensus 113 ~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (379)
T 4h09_A 113 TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILE 188 (379)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEE
T ss_pred CCcccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccceecccccceec
Confidence 47888888765 333444455554 5666665543 33 5555666677788877776543221 1122
Q ss_pred cccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCcccccCCCCC
Q 044158 472 KKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFCQLDYL 551 (892)
Q Consensus 472 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 551 (892)
.+.....+..+.+.... .......+..+.+|+.+.+..+ +......++..+..|+.+.+..+ ++.....+|.++.+|
T Consensus 189 ~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l 265 (379)
T 4h09_A 189 SYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTAL 265 (379)
T ss_dssp ECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTC
T ss_pred cccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehh
Confidence 33445555555554432 2233456677788888887654 34344567788888888888765 554556678888889
Q ss_pred cEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCCCCCEEecccccccccCCccccCCCCCCEEEcCC
Q 044158 552 EILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLSQLRYLILANNNFEGEVPLRLCQLQKLRLLDLSH 631 (892)
Q Consensus 552 ~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 631 (892)
+.+.+..+ ++.+ -..+|.+|++|+.+.+.++.++..-...|.++++|+.+.|..+ ++.....+|.++++|+.+.+..
T Consensus 266 ~~i~l~~~-i~~i-~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 266 KTLNFYAK-VKTV-PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CEEEECCC-CSEE-CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccc-ceec-cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 98888654 3331 2457888999999999888887666678888999999999754 5545566788888898887754
Q ss_pred C
Q 044158 632 N 632 (892)
Q Consensus 632 N 632 (892)
+
T Consensus 343 ~ 343 (379)
T 4h09_A 343 S 343 (379)
T ss_dssp T
T ss_pred c
Confidence 4
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.84 E-value=1.8e-07 Score=102.12 Aligned_cols=142 Identities=16% Similarity=0.121 Sum_probs=69.5
Q ss_pred cCccCcEEEccCCcccccccccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEccCCcCCCCccccccCCCCCcEE
Q 044158 451 GCFNLEYLLLSNNSLQGQLFSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAI 530 (892)
Q Consensus 451 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 530 (892)
.+.+|+.+.+..+ +.......|.++..|+.+.+..+ ++.....+|.++.+|+.+.+..+ +......+|..+++|+.+
T Consensus 215 ~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i 291 (379)
T 4h09_A 215 YGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV 291 (379)
T ss_dssp TCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred cccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence 3444444444322 22233334444555555555443 22233344555555555555432 332333445555566666
Q ss_pred ECCCCcccCCCcccccCCCCCcEEeCCCCccCCCcccccccCCCCccEEEccCCccCccCChhhhcCC
Q 044158 531 IMPDNHLEGPIPSEFCQLDYLEILDLSKNNIAGRPLNGAFSKCSYLLTLDLCNNRLNGNIPNWMGRLS 598 (892)
Q Consensus 531 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~ 598 (892)
.+.++.++.....+|.++.+|+.++|..+ ++.+. ..+|.+|++|+.+.+..+ ++..-..+|.+++
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~-~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ-VYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC-TTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-ccEEH-HHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 65555555444555666666666666543 33211 346666777777666544 4433344555543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=2.3e-09 Score=114.65 Aligned_cols=82 Identities=15% Similarity=0.231 Sum_probs=49.0
Q ss_pred CccceeeccCccccccCCcccc---ccCCCCEEEccCccCCcc----ccccccCCCCCCEEECCCCcCcccCCccccC-C
Q 044158 698 ESIHGLDLSCNKLIGEIPSRIG---ELIRIHTLNLSRNNLTGT----IPVTFSNLRQVESLDLSYNNLTGKIPPRLVE-L 769 (892)
Q Consensus 698 ~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~-l 769 (892)
++|+.|+|++|.+.+..+..+. .+++|++|+|+.|.+++. ++..+.++++|+.|+|++|.++...-..+.. +
T Consensus 252 p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al 331 (362)
T 2ra8_A 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL 331 (362)
T ss_dssp TTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC
T ss_pred CCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc
Confidence 3566666666666543333322 466778888888777753 3334455678888888888777443333332 2
Q ss_pred CCCCEEEccCCc
Q 044158 770 NALAVFTVAHNN 781 (892)
Q Consensus 770 ~~L~~l~ls~N~ 781 (892)
...++++.|+
T Consensus 332 --g~~~~~~~~~ 341 (362)
T 2ra8_A 332 --PMKIDVSDSQ 341 (362)
T ss_dssp --CSEEECCSBC
T ss_pred --CCEEEecCCc
Confidence 3557777776
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.71 E-value=1.2e-09 Score=110.51 Aligned_cols=85 Identities=28% Similarity=0.297 Sum_probs=47.0
Q ss_pred cCCCCCCEEecCCccccc--CCChhhhcCCCCCCEEeCCCCCCCCccccccccCCCCCcEEeCCCCcCCCCc-----ccc
Q 044158 98 AGLSSLKNLSLAYNRLEG--SINIEELDSLSNLEGLDMSDNEIDNLVVPKDYRGLRKLRFLDLSGLRIRDGS-----KVL 170 (892)
Q Consensus 98 ~~l~~L~~L~Ls~n~l~~--~i~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~l~~L~~L~L~~n~i~~~~-----~~~ 170 (892)
.++++|++|+|++|.+++ .++. .+..+++|++|+|++|.+++......+..+ +|++|+|++|.+.+.. ...
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 356666666666666653 2222 445666666666666666655211223333 6777777777765420 011
Q ss_pred ccccCCCCCCEEEC
Q 044158 171 HSIGSFPSLKTLYL 184 (892)
Q Consensus 171 ~~l~~l~~L~~L~L 184 (892)
..+..+++|+.||-
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 23566777777753
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.71 E-value=8.4e-09 Score=110.34 Aligned_cols=137 Identities=17% Similarity=0.172 Sum_probs=74.9
Q ss_pred ccccCCCCcEEEccCCcCCCCccccccCCCCCcEEECCCCcccCCCccccc--CCCCCcEEeCCC--CccCCC----ccc
Q 044158 496 SLSNCSSLQGLYISDNDISGSIPTWMGNISFLDAIIMPDNHLEGPIPSEFC--QLDYLEILDLSK--NNIAGR----PLN 567 (892)
Q Consensus 496 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~Ls~--n~l~~~----~~~ 567 (892)
.+..+++|+.|++++|.-. .++. +. .++|+.|++..+.+.......+. .+++|++|+|+. |...+. .+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 3344555555555554211 1111 22 45666666665555433222332 566677776642 111110 011
Q ss_pred ccc--cCCCCccEEEccCCccCccCChhhh---cCCCCCEEeccccccccc----CCccccCCCCCCEEEcCCCcCC
Q 044158 568 GAF--SKCSYLLTLDLCNNRLNGNIPNWMG---RLSQLRYLILANNNFEGE----VPLRLCQLQKLRLLDLSHNNFS 635 (892)
Q Consensus 568 ~~~--~~~~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 635 (892)
..+ ..+++|++|+|++|.+.+..+..+. .+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 122 2467888888888877654433332 467888888888887753 2333455688888888888776
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.45 E-value=4e-08 Score=94.72 Aligned_cols=65 Identities=11% Similarity=0.090 Sum_probs=28.9
Q ss_pred CCCCCEEeCCCCCCCCcc---ccccccCCCCCcEEeC--CCCcCCCCc--cccccccCCCCCCEEECCCCCC
Q 044158 125 LSNLEGLDMSDNEIDNLV---VPKDYRGLRKLRFLDL--SGLRIRDGS--KVLHSIGSFPSLKTLYLKSNNF 189 (892)
Q Consensus 125 l~~L~~L~L~~n~i~~~~---~~~~~~~l~~L~~L~L--~~n~i~~~~--~~~~~l~~l~~L~~L~L~~n~l 189 (892)
.++|++|+|++|.|.... ....+...+.|++|+| ++|.+.+.. .+...+...+.|++|++++|.+
T Consensus 92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 344444444444444321 1122344445555555 445544321 1223344445566666666544
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.28 E-value=6.1e-07 Score=90.60 Aligned_cols=67 Identities=22% Similarity=0.292 Sum_probs=42.0
Q ss_pred cccCCCCEEEccCccCCc--cccccccCCCCCCEEECCCCcCcccCCccccCCC--CCCEEEccCCcccccCC
Q 044158 719 GELIRIHTLNLSRNNLTG--TIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELN--ALAVFTVAHNNLSGKIP 787 (892)
Q Consensus 719 ~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~--~L~~l~ls~N~l~g~ip 787 (892)
.++++|++|+|++|+|++ .+|..++.+++|+.|||++|+|++. ..+..+. .|+.|++++|++++.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 455667777777777766 3445556667777777777777654 2333333 67777777777766655
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.24 E-value=3.2e-07 Score=88.30 Aligned_cols=91 Identities=12% Similarity=0.116 Sum_probs=47.0
Q ss_pred ccCCCCCcEEeCCCCccCCC---cccccccCCCCccEEEccCCccCcc----CChhhhcCCCCCEEec--ccccccccC-
Q 044158 545 FCQLDYLEILDLSKNNIAGR---PLNGAFSKCSYLLTLDLCNNRLNGN----IPNWMGRLSQLRYLIL--ANNNFEGEV- 614 (892)
Q Consensus 545 ~~~l~~L~~L~Ls~n~l~~~---~~~~~~~~~~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L--~~n~l~~~~- 614 (892)
+...++|++|+|++|.+... .+...+...++|++|+|++|.+... +...+...++|++|+| ++|.+....
T Consensus 61 L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 61 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 33344555555555554321 1122334445566666666655532 2334445566666666 556665332
Q ss_pred ---CccccCCCCCCEEEcCCCcCC
Q 044158 615 ---PLRLCQLQKLRLLDLSHNNFS 635 (892)
Q Consensus 615 ---~~~~~~l~~L~~L~Ls~N~l~ 635 (892)
...+...++|++|+|++|.+.
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCcCEEeccCCCCC
Confidence 233444567777777777654
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.89 E-value=3.1e-06 Score=78.97 Aligned_cols=83 Identities=17% Similarity=0.307 Sum_probs=37.1
Q ss_pred CCCEEeCCCCCCCCcccccccCCCCCCEEecCCcc-cccCCChhhhcCC----CCCCEEeCCCCC-CCCccccccccCCC
Q 044158 78 NLKFLDLSHNSFNNSVLSSLAGLSSLKNLSLAYNR-LEGSINIEELDSL----SNLEGLDMSDNE-IDNLVVPKDYRGLR 151 (892)
Q Consensus 78 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~Ls~n~-l~~~i~~~~l~~l----~~L~~L~L~~n~-i~~~~~~~~~~~l~ 151 (892)
.|++||+++|.+++.....+.++++|++|+|++|. ++ .-....+..+ ++|++|+|++|. +++..... +.+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~It-D~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~-L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIE-DGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA-LHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCC-HHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH-GGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccC-HHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH-HhcCC
Confidence 34455555554444444444455555555555543 22 1111123332 245555555543 44433222 44555
Q ss_pred CCcEEeCCCCc
Q 044158 152 KLRFLDLSGLR 162 (892)
Q Consensus 152 ~L~~L~L~~n~ 162 (892)
+|++|+++++.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 55555555553
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.86 E-value=2.2e-06 Score=79.91 Aligned_cols=87 Identities=20% Similarity=0.332 Sum_probs=64.1
Q ss_pred CCCcEEeCCCCccCCccccccccccCCCCCCCEEeCCCCC-CCCcccccccCC----CCCCEEecCCcc-cccCCChhhh
Q 044158 49 QQLESLDLSGNNIAGCVENEGLEKLSGLSNLKFLDLSHNS-FNNSVLSSLAGL----SSLKNLSLAYNR-LEGSINIEEL 122 (892)
Q Consensus 49 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~i~~~~l 122 (892)
.+|+.||++++.|+. .++..+..+++|++|+|++|. +++.....++.+ ++|++|+|++|. ++ .-....+
T Consensus 61 ~~L~~LDLs~~~Itd----~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT-D~Gl~~L 135 (176)
T 3e4g_A 61 YKIQAIDATDSCIMS----IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT-DKGIIAL 135 (176)
T ss_dssp CCEEEEEEESCCCCG----GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC-HHHHHHG
T ss_pred ceEeEEeCcCCCccH----HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC-HHHHHHH
Confidence 468889999887653 445667888899999999884 777666667764 478999998875 54 2233457
Q ss_pred cCCCCCCEEeCCCCC-CCC
Q 044158 123 DSLSNLEGLDMSDNE-IDN 140 (892)
Q Consensus 123 ~~l~~L~~L~L~~n~-i~~ 140 (892)
..+++|++|++++|. +++
T Consensus 136 ~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCEEECCCCCCCCc
Confidence 788889999998885 554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.11 E-value=0.00022 Score=67.74 Aligned_cols=65 Identities=11% Similarity=0.091 Sum_probs=29.8
Q ss_pred CCCCCCEEeCCCCCCCCccc---cccccCCCCCcEEeCCCCc---CCCC--ccccccccCCCCCCEEECCCCC
Q 044158 124 SLSNLEGLDMSDNEIDNLVV---PKDYRGLRKLRFLDLSGLR---IRDG--SKVLHSIGSFPSLKTLYLKSNN 188 (892)
Q Consensus 124 ~l~~L~~L~L~~n~i~~~~~---~~~~~~l~~L~~L~L~~n~---i~~~--~~~~~~l~~l~~L~~L~L~~n~ 188 (892)
.-+.|++|+|+.|.|..... ..++..-+.|++|+|+++. +... ..+...+..-+.|++|+++.+.
T Consensus 96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 33445555555555543221 1223444456666665432 2211 1133344555666667666553
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.02 E-value=0.00065 Score=60.33 Aligned_cols=58 Identities=29% Similarity=0.334 Sum_probs=45.7
Q ss_pred CEEEccCccCC-ccccccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEEccCCcccc
Q 044158 725 HTLNLSRNNLT-GTIPVTFSNLRQVESLDLSYNNLTGKIPPRLVELNALAVFTVAHNNLSG 784 (892)
Q Consensus 725 ~~L~Ls~N~l~-~~~p~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~l~ls~N~l~g 784 (892)
..++-+++.++ ..+|..+. .+|+.|||++|+|+..-+..|..+++|+.|+|++|++..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 47888999987 45665433 468999999999997767778888899998888887765
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.67 E-value=0.0016 Score=61.88 Aligned_cols=42 Identities=17% Similarity=0.247 Sum_probs=17.8
Q ss_pred cCCCCCCCEEeCCCCCCCCcc----cccccCCCCCCEEecCCcccc
Q 044158 73 LSGLSNLKFLDLSHNSFNNSV----LSSLAGLSSLKNLSLAYNRLE 114 (892)
Q Consensus 73 ~~~l~~L~~L~Ls~n~i~~~~----~~~l~~l~~L~~L~Ls~n~l~ 114 (892)
+..-+.|+.|+|++|+|.+.. .+.+..-+.|++|+|++|.|.
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 334444555555555444321 122223344455555544443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.62 E-value=0.0026 Score=56.45 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=48.0
Q ss_pred eeeccCcccc-ccCCccccccCCCCEEEccCccCCccccccccCCCCCCEEECCCCcCc
Q 044158 702 GLDLSCNKLI-GEIPSRIGELIRIHTLNLSRNNLTGTIPVTFSNLRQVESLDLSYNNLT 759 (892)
Q Consensus 702 ~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~LdLs~N~l~ 759 (892)
.+|.++++++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6899999997 46776544 36999999999999887888999999999999999876
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.89 E-value=13 Score=30.51 Aligned_cols=45 Identities=16% Similarity=0.164 Sum_probs=22.0
Q ss_pred CCCcccccccCCCCCCEEecCCcccccCCChhhhcCCCCCCEEeCCC
Q 044158 89 FNNSVLSSLAGLSSLKNLSLAYNRLEGSINIEELDSLSNLEGLDMSD 135 (892)
Q Consensus 89 i~~~~~~~l~~l~~L~~L~Ls~n~l~~~i~~~~l~~l~~L~~L~L~~ 135 (892)
++.+...+|.+|.+|+.+.+..+ ++ .|...+|.+|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcC
Confidence 33344445555555555555543 22 34444555555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=39.61 E-value=30 Score=28.20 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=17.3
Q ss_pred cccccccCCCcEEeecCccCcCCCCcccccCCCCcEEEcc
Q 044158 470 FSKKINLTKLKRLNLDGNHFIGGIPESLSNCSSLQGLYIS 509 (892)
Q Consensus 470 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~l~~L~~L~L~ 509 (892)
...|.+|++|+.+.|-.+ ++..-..+|.+|.+|+.+.+.
T Consensus 13 ~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 13 KSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp SCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred HHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 344444445555444433 222333445555555555443
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=27.52 E-value=19 Score=19.22 Aligned_cols=12 Identities=17% Similarity=0.664 Sum_probs=8.8
Q ss_pred CCCCcccceeEe
Q 044158 6 YSDCCQWQSVLC 17 (892)
Q Consensus 6 ~~~~c~w~gv~c 17 (892)
.+.-|+|+|..-
T Consensus 4 adgacswrglen 15 (23)
T 3ox7_P 4 ADGACSWRGLEN 15 (26)
T ss_pred cCcccccccchh
Confidence 455799999754
No 168
>2gx1_A Neurotoxin MAGI-5; spider toxin; NMR {Synthetic}
Probab=26.52 E-value=28 Score=19.94 Aligned_cols=13 Identities=31% Similarity=1.255 Sum_probs=9.0
Q ss_pred CCCCCCCCCcccc
Q 044158 1 WVDESYSDCCQWQ 13 (892)
Q Consensus 1 w~~~~~~~~c~w~ 13 (892)
|+-+.+..||.|.
T Consensus 7 w~ck~~keccgwn 19 (29)
T 2gx1_A 7 WKCKNKKECCGWN 19 (29)
T ss_dssp SCCSSTTSBSSCC
T ss_pred EEecCCccccccc
Confidence 4434467899998
No 169
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=22.19 E-value=49 Score=20.41 Aligned_cols=22 Identities=27% Similarity=0.667 Sum_probs=10.7
Q ss_pred hhhHHHHHHHHHhhhhhhccchhhH
Q 044158 846 FTVSSVIVILGIIGVLWANPYWRHR 870 (892)
Q Consensus 846 ~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (892)
+.++.+++|.++...++ +||-|
T Consensus 12 ~i~gl~vif~~lg~tfl---ywrgr 33 (40)
T 2l9u_A 12 VIAGLVVIFMMLGGTFL---YWRGR 33 (40)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHHHHhCceeE---EEccc
Confidence 34444555544444444 46654
Done!