BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044161
(229 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1
pdb|1H89|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex2
Length = 159
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 3/106 (2%)
Query: 6 LSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLK-RSGKSCGLRWLNYLCPNIKHGYI 64
L KGPW +EED+ ++ V +G +RW IAK LK R GK C RW N+L P +K
Sbjct: 56 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSW 113
Query: 65 STEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRKKI 110
+ EE++II Q HK+ GN+W+ IA+ LPGRTDN IKN+W + +R+K+
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 2/107 (1%)
Query: 6 LSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYIS 65
L K W EEDE L V G W IA R+ C RW L P + G +
Sbjct: 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWT 62
Query: 66 TEEEQIIIQLHKKWGNK-WSRIARNLPGRTDNEIKNYWRTRIRKKIQ 111
EE+Q +I+L +K+G K WS IA++L GR + + W + +++
Sbjct: 63 KEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVK 109
>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3
Length = 105
Score = 102 bits (254), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 3/106 (2%)
Query: 6 LSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLK-RSGKSCGLRWLNYLCPNIKHGYI 64
L KGPW +EED+ ++ V +G +RW IAK LK R GK C RW N+L P +K
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSW 59
Query: 65 STEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRKKI 110
+ EE++II Q HK+ GN+W+ IA+ LPGRTDN IKN+W + +R+K+
Sbjct: 60 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 62 GYISTEEEQIIIQLHKKWGNK-WSRIARNLPGRTDNEIKNYWRTRIRKKIQ 111
G + EE+Q +I+L +K+G K WS IA++L GR + + W + +++
Sbjct: 5 GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVK 55
>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
pdb|1MSF|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb
Dna- Binding Domain With Cooperative Recognition Helices
Length = 105
Score = 102 bits (253), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 3/106 (2%)
Query: 6 LSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLK-RSGKSCGLRWLNYLCPNIKHGYI 64
L KGPW +EED+ ++ V +G +RW IAK LK R GK C RW N+L P +K
Sbjct: 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNPEVKKTSW 59
Query: 65 STEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRKKI 110
+ EE++II Q HK+ GN+W+ IA+ LPGRTDN IKN+W + +R+K+
Sbjct: 60 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 62 GYISTEEEQIIIQLHKKWGNK-WSRIARNLPGRTDNEIKNYWRTRIRKKIQ 111
G + EE+Q +I+L +K+G K WS IA++L GR + + W + +++
Sbjct: 5 GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVK 55
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 101 bits (252), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 73/106 (68%), Gaps = 3/106 (2%)
Query: 6 LSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLK-RSGKSCGLRWLNYLCPNIKHGYI 64
L+KGPW +EED+ ++ V +G +RW IAK LK R GK C RW N+L P +K
Sbjct: 25 LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKH--LKGRIGKQCRERWHNHLNPEVKKTSW 82
Query: 65 STEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRKKI 110
+ EE++II Q HK+ GN+W+ IA+ LPGRTDN +KN+W + +R+K+
Sbjct: 83 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 42 RSGKSCGLRWLNYLCPNIKHGYISTEEEQIIIQLHKKWGNK-WSRIARNLPGRTDNEIKN 100
R+ C RW L P + G + EE+Q +I+ +K+G K WS IA++L GR + +
Sbjct: 8 RTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRE 67
Query: 101 YWRTRIRKKIQ 111
W + +++
Sbjct: 68 RWHNHLNPEVK 78
>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3,
Nmr, 32 Structures
Length = 110
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 71/106 (66%), Gaps = 3/106 (2%)
Query: 6 LSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLK-RSGKSCGLRWLNYLCPNIKHGYI 64
L KGPW +EED+ ++ V +G ++W IAK LK R GK C RW N+L P +K
Sbjct: 5 LVKGPWTKEEDQKVIELVKKYGTKQWTLIAKH--LKGRLGKQCRERWHNHLNPEVKKSSW 62
Query: 65 STEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRKKI 110
+ EE++II + HK GN+W+ IA+ LPGRTDN +KN+W + I++K+
Sbjct: 63 TEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 56 CPNIKHGYISTEEEQIIIQLHKKWGNK-WSRIARNLPGRTDNEIKNYWRTRIRKKIQ 111
P++ G + EE+Q +I+L KK+G K W+ IA++L GR + + W + +++
Sbjct: 2 IPDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVK 58
>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|D Chain D, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|G Chain G, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
pdb|3ZQC|J Chain J, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding
Domain Bound To A Promoter Sequence Reveals A Unique C-
Terminal Beta-Hairpin Conformation
Length = 131
Score = 77.4 bits (189), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/103 (41%), Positives = 61/103 (59%), Gaps = 1/103 (0%)
Query: 8 KGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTE 67
KGP+ E ED+L+ +V G + W I + RS K C RW N+L P + + E
Sbjct: 2 KGPFTEAEDDLIREYVKENGPQNWPRIT-SFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 68 EEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRKKI 110
E++ I + + K G+KWS IA+ +PGRTDN IKN W + I K+I
Sbjct: 61 EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRI 103
>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSF|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-2f-13 Dna
pdb|3OSG|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
pdb|3OSG|D Chain D, The Structure Of Protozoan Parasite Trichomonas Vaginalis
Myb2 In Complex With Mre-1-12 Dna
Length = 126
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 2/91 (2%)
Query: 14 EEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTEEEQIII 73
EEDE+L V G W IA A+ R+ + C RW NYL P+I H + EE+ +++
Sbjct: 17 EEDEMLKRAVAQHGSD-WKMIA-ATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLV 74
Query: 74 QLHKKWGNKWSRIARNLPGRTDNEIKNYWRT 104
Q +++G +W+ IA+ PGRTD IKN W T
Sbjct: 75 QKIQEYGRQWAIIAKFFPGRTDIHIKNRWVT 105
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 6 LSKGPWHEEEDELLVTFVTLFGERRWDYIAK 36
+S PW EED LLV + +G R+W IAK
Sbjct: 60 ISHTPWTAEEDALLVQKIQEYG-RQWAIIAK 89
>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of
Myb1 Protein From Protozoan Parasite Trichomonas
Vaginalis
pdb|2KDZ|A Chain A, Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein
From Protozoan Parasite Trichomonas Vaginalis In Complex
With Mre-1MRE-2r Dna
Length = 107
Score = 60.5 bits (145), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 58/102 (56%), Gaps = 1/102 (0%)
Query: 13 EEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTEEEQII 72
EEED L V +G + W I++ + R+ + C RW NY+ P ++ S EE+ ++
Sbjct: 6 EEEDLKLQQLVMRYGAKDWIRISQLM-ITRNPRQCRERWNNYINPALRTDPWSPEEDMLL 64
Query: 73 IQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRKKIQAQE 114
Q + ++G KW++I++ L R+DN I+N W R + + Q+
Sbjct: 65 DQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKHQK 106
>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
pdb|1MBK|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3
Length = 53
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 37/46 (80%)
Query: 65 STEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRKKI 110
+ EE++II Q HK+ GN+W+ IA+ LPGRTDN IKN+W + +R+K+
Sbjct: 7 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52
>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized
Average Structure
pdb|1IDZ|A Chain A, Structure Of Myb Transforming Protein, Nmr, 20 Structures
Length = 54
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 39/52 (75%)
Query: 59 IKHGYISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRKKI 110
+K + EE++I+ Q HK+ GN+W+ IA+ LPGRTDN IKN+W + +R+K+
Sbjct: 3 VKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54
>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant
Length = 52
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 6 LSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLK-RSGKSCGLRWLNYLCP 57
L KGPW +EED+ L+ V +G +RW IAK LK R GK C RW N+L P
Sbjct: 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNP 51
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 62 GYISTEEEQIIIQLHKKWGNK-WSRIARNLPGRTDNEIKNYWRTRI 106
G + EE+Q +I+L +K+G K WS IA++L GR + + W +
Sbjct: 4 GPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2
Length = 52
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 6 LSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLK-RSGKSCGLRWLNYLCP 57
L KGPW +EED+ ++ V +G +RW IAK LK R GK C RW N+L P
Sbjct: 1 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNP 51
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 62 GYISTEEEQIIIQLHKKWGNK-WSRIARNLPGRTDNEIKNYWRTRI 106
G + EE+Q +I+L +K+G K WS IA++L GR + + W +
Sbjct: 4 GPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
pdb|1MBH|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2
Length = 53
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 6 LSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLK-RSGKSCGLRWLNYLCP 57
L KGPW +EED+ ++ V +G +RW IAK LK R GK C RW N+L P
Sbjct: 1 LIKGPWTKEEDQRVIELVQKYGPKRWSVIAKH--LKGRIGKQCRERWHNHLNP 51
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 62 GYISTEEEQIIIQLHKKWGNK-WSRIARNLPGRTDNEIKNYWRTRI 106
G + EE+Q +I+L +K+G K WS IA++L GR + + W +
Sbjct: 4 GPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 49
>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of
Human Cell Division Cycle 5-Like Protein
Length = 70
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 11 WHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIK 60
W EDE+L V +G+ +W IA ++S K C RW +L P+IK
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIK 60
>pdb|2D9A|A Chain A, Solution Structure Of Rsgi Ruh-050, A Myb Dna-Binding
Domain In Mouse Cdna
Length = 60
Score = 33.9 bits (76), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 8 KGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYL 55
K W EEDE L V FG++ W ++A + R+ + C RWL L
Sbjct: 8 KVKWTHEEDEQLRALVRQFGQQDWKFLA-SHFPNRTDQQCQYRWLRVL 54
>pdb|1EP1|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B
pdb|1EP2|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B Complexed With Orotate
pdb|1EP3|A Chain A, Crystal Structure Of Lactococcus Lactis Dihydroorotate
Dehydrogenase B. Data Collected Under Cryogenic
Conditions
Length = 311
Score = 32.3 bits (72), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 1 MQEEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIK 60
+ EKL PW E L + G DY+A + + + + LN CPN+K
Sbjct: 84 IMTEKL---PWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIE-LNISCPNVK 139
Query: 61 HG 62
HG
Sbjct: 140 HG 141
>pdb|2CU7|A Chain A, Solution Structure Of The Sant Domain Of Human Kiaa1915
Protein
Length = 72
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 30/48 (62%)
Query: 65 STEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRKKIQA 112
+ EE+++ Q K+G +W++I++ + RT ++K+Y R + K++
Sbjct: 13 TIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60
>pdb|3LZC|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii
pdb|3LZC|B Chain B, Crystal Structure Of Dph2 From Pyrococcus Horikoshii
pdb|3LZD|A Chain A, Crystal Structure Of Dph2 From Pyrococcus Horikoshii With
4fe-4s Cluster
pdb|3LZD|B Chain B, Crystal Structure Of Dph2 From Pyrococcus Horikoshii With
4fe-4s Cluster
Length = 378
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 10/64 (15%)
Query: 26 FGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTEEEQIIIQLHKKWGNKWSR 85
F +RW IAKA K+ G + +IK G + E + I++L KK G +
Sbjct: 250 FIRKRWAQIAKAMDAKKFG----------VIVSIKKGQLRLAEAKRIVKLLKKHGREARL 299
Query: 86 IARN 89
I N
Sbjct: 300 IVMN 303
>pdb|4FYE|A Chain A, Crystal Structure Of A Legionella Phosphoinositide
Phosphatase, Sidf
pdb|4FYF|A Chain A, Structural Basis For Substrate Recognition By A Novel
Legionella Phosphoinositide Phosphatase
pdb|4FYG|A Chain A, Structural Basis For Substrate Recognition By A Novel
Legionella Phosphoinositide Phosphatase
Length = 761
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Query: 179 IRDWMSELSDDQSKITQQGGSNI-VESCFGCQASIAEYTDTWG 220
+R M ++KIT Q GSN VE+ G QA ++ +WG
Sbjct: 380 VRQMMDAFDGSKAKITIQTGSNTEVETAVGYQARMS----SWG 418
>pdb|2V50|A Chain A, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|B Chain B, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|C Chain C, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|D Chain D, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|E Chain E, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
pdb|2V50|F Chain F, The Missing Part Of The Bacterial Mexab-Oprm System:
Structural Determination Of The Multidrug Exporter Mexb
Length = 1052
Score = 27.7 bits (60), Expect = 5.1, Method: Composition-based stats.
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Query: 1 MQEEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIK 60
M + LSK W+ D+ + F +W+Y + L+R + L P +
Sbjct: 780 MNPDDLSK--WYVRNDKGEMVPFNAFATGKWEY--GSPKLERYNGVPAMEILGEPAPGLS 835
Query: 61 HGYISTEEEQIIIQLHKKWGNKWSRIA 87
G E+I+ QL K G W+ ++
Sbjct: 836 SGDAMAAVEEIVKQLPKGVGYSWTGLS 862
>pdb|2M2E|A Chain A, Solution Nmr Structure Of The Sant Domain Of Human Dnajc2,
Northeast Structural Genomics Consortium Target Hr8254a
Length = 73
Score = 27.7 bits (60), Expect = 5.7, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 65 STEEEQIIIQLHKKWG----NKWSRIARNLPGRTDNEIKNYWR---TRIRKKIQAQEQ 115
+TEE++++ Q K + +W +IA +PGRT + ++ ++ K AQEQ
Sbjct: 7 TTEEQKLLEQALKTYPVNTPERWKKIAEAVPGRTKKDCMKRYKELVEMVKAKKAAQEQ 64
>pdb|2CMW|A Chain A, Structure Of Human Casein Kinase 1 Gamma-1 In Complex With
2-(2-Hydroxyethylamino)-6-(3-Chloroanilino)-9-
Isopropylpurine (Casp Target)
Length = 310
Score = 26.9 bits (58), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 116 ENFQFGRNNAKRDSLFSNLDFNVQKHETDDEHK 148
ENF GR K++ + +DF + K D E K
Sbjct: 126 ENFLIGRQGNKKEHVIHIIDFGLAKEYIDPETK 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,693,752
Number of Sequences: 62578
Number of extensions: 322586
Number of successful extensions: 644
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 596
Number of HSP's gapped (non-prelim): 41
length of query: 229
length of database: 14,973,337
effective HSP length: 95
effective length of query: 134
effective length of database: 9,028,427
effective search space: 1209809218
effective search space used: 1209809218
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)