Query 044161
Match_columns 229
No_of_seqs 187 out of 1383
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 20:59:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044161.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044161hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gv2_A C-MYB, MYB proto-oncoge 100.0 8.8E-36 3E-40 227.1 11.1 104 5-109 1-104 (105)
2 2k9n_A MYB24; R2R3 domain, DNA 100.0 1.2E-35 4.2E-40 227.5 10.2 103 8-111 1-103 (107)
3 1h8a_C AMV V-MYB, MYB transfor 100.0 6.7E-35 2.3E-39 229.9 11.2 107 2-109 21-127 (128)
4 3osg_A MYB21; transcription-DN 100.0 1.6E-34 5.5E-39 227.4 11.5 105 3-109 6-110 (126)
5 3zqc_A MYB3; transcription-DNA 100.0 6.7E-35 2.3E-39 230.9 8.3 106 7-113 1-106 (131)
6 1h89_C C-MYB, MYB proto-oncoge 100.0 1.3E-32 4.4E-37 224.2 11.1 107 2-109 52-158 (159)
7 1h89_C C-MYB, MYB proto-oncoge 100.0 1.7E-31 5.9E-36 217.5 5.2 106 5-111 3-109 (159)
8 2dim_A Cell division cycle 5-l 99.9 5.3E-24 1.8E-28 151.0 3.7 67 2-69 3-69 (70)
9 1h8a_C AMV V-MYB, MYB transfor 99.8 6.3E-22 2.1E-26 155.6 5.1 77 34-111 1-78 (128)
10 1ign_A Protein (RAP1); RAP1,ye 99.8 4.8E-21 1.6E-25 163.6 7.8 106 3-109 3-200 (246)
11 2d9a_A B-MYB, MYB-related prot 99.8 1.3E-19 4.4E-24 124.5 5.4 58 2-60 2-59 (60)
12 2juh_A Telomere binding protei 99.8 2.2E-19 7.5E-24 139.7 5.2 82 3-85 12-103 (121)
13 1gvd_A MYB proto-oncogene prot 99.8 2.6E-19 8.8E-24 119.6 4.3 52 6-58 1-52 (52)
14 1guu_A C-MYB, MYB proto-oncoge 99.8 4.1E-19 1.4E-23 118.6 3.9 52 6-58 1-52 (52)
15 2llk_A Cyclin-D-binding MYB-li 99.7 1.1E-18 3.8E-23 124.6 5.7 60 47-107 9-68 (73)
16 2roh_A RTBP1, telomere binding 99.7 1.7E-18 5.7E-23 134.9 7.0 78 4-82 27-114 (122)
17 1ity_A TRF1; helix-turn-helix, 99.7 1.2E-18 4.2E-23 123.0 5.3 63 3-65 5-68 (69)
18 3sjm_A Telomeric repeat-bindin 99.7 2E-18 6.7E-23 120.4 4.3 57 4-60 7-64 (64)
19 1x41_A Transcriptional adaptor 99.7 5.4E-18 1.9E-22 116.6 4.8 55 3-58 3-57 (60)
20 2din_A Cell division cycle 5-l 99.7 1.9E-17 6.5E-22 115.8 5.9 59 54-113 2-60 (66)
21 2din_A Cell division cycle 5-l 99.7 4.6E-18 1.6E-22 118.9 1.6 59 2-63 3-61 (66)
22 1w0t_A Telomeric repeat bindin 99.7 3.1E-17 1.1E-21 109.9 4.1 50 7-56 1-51 (53)
23 2yum_A ZZZ3 protein, zinc fing 99.7 3E-17 1E-21 117.5 3.5 60 3-63 3-67 (75)
24 2d9a_A B-MYB, MYB-related prot 99.7 9.2E-17 3.1E-21 110.2 5.6 55 56-110 3-58 (60)
25 2cu7_A KIAA1915 protein; nucle 99.7 1.2E-16 4.1E-21 113.6 6.2 58 55-112 3-60 (72)
26 2elk_A SPCC24B10.08C protein; 99.7 7.7E-17 2.6E-21 110.1 4.6 52 4-55 5-56 (58)
27 2cu7_A KIAA1915 protein; nucle 99.6 4.4E-17 1.5E-21 115.9 3.5 57 3-61 4-60 (72)
28 1guu_A C-MYB, MYB proto-oncoge 99.6 2.6E-16 8.8E-21 104.9 6.3 50 59-108 1-51 (52)
29 1gvd_A MYB proto-oncogene prot 99.6 5.1E-16 1.7E-20 103.5 6.4 50 59-108 1-51 (52)
30 2llk_A Cyclin-D-binding MYB-li 99.6 5.7E-16 1.9E-20 110.5 5.1 56 2-61 17-72 (73)
31 1ity_A TRF1; helix-turn-helix, 99.6 9.9E-16 3.4E-20 107.9 5.6 59 54-112 3-64 (69)
32 2dim_A Cell division cycle 5-l 99.6 1E-15 3.5E-20 108.1 5.3 56 56-111 4-60 (70)
33 1x41_A Transcriptional adaptor 99.6 1.9E-15 6.7E-20 103.7 6.4 53 56-108 3-56 (60)
34 1w0t_A Telomeric repeat bindin 99.6 2.8E-15 9.6E-20 100.3 6.6 49 60-108 1-52 (53)
35 3zqc_A MYB3; transcription-DNA 99.6 1.2E-15 4E-20 120.2 3.2 82 3-90 49-130 (131)
36 3sjm_A Telomeric repeat-bindin 99.5 7.7E-15 2.6E-19 102.1 5.9 52 59-110 9-63 (64)
37 2ckx_A NGTRF1, telomere bindin 99.5 9.8E-15 3.4E-19 106.6 6.4 69 9-78 1-79 (83)
38 2aje_A Telomere repeat-binding 99.5 5.6E-15 1.9E-19 112.3 5.1 77 3-80 8-94 (105)
39 2yum_A ZZZ3 protein, zinc fing 99.5 5.6E-15 1.9E-19 105.6 4.6 56 56-111 3-64 (75)
40 2elk_A SPCC24B10.08C protein; 99.5 2.2E-14 7.4E-19 97.8 6.6 50 57-106 5-56 (58)
41 2ltp_A Nuclear receptor corepr 99.2 1.9E-15 6.5E-20 111.8 0.0 57 53-109 8-64 (89)
42 2ltp_A Nuclear receptor corepr 99.2 2.7E-15 9.3E-20 110.9 0.0 54 2-57 10-63 (89)
43 2yus_A SWI/SNF-related matrix- 99.5 2.5E-14 8.4E-19 103.5 5.0 49 4-54 14-62 (79)
44 1gv2_A C-MYB, MYB proto-oncoge 99.5 2E-14 6.7E-19 108.8 4.1 55 2-58 50-104 (105)
45 2cqr_A RSGI RUH-043, DNAJ homo 99.4 2.7E-14 9.3E-19 101.8 2.7 54 3-57 13-69 (73)
46 2k9n_A MYB24; R2R3 domain, DNA 99.4 2.9E-14 9.8E-19 108.5 3.0 53 3-57 48-100 (107)
47 2cqr_A RSGI RUH-043, DNAJ homo 99.4 2.1E-13 7.3E-18 97.1 6.1 52 57-108 14-69 (73)
48 3osg_A MYB21; transcription-DN 99.4 1.1E-13 3.7E-18 108.3 3.6 53 3-57 57-109 (126)
49 1x58_A Hypothetical protein 49 99.4 7E-13 2.4E-17 91.0 6.4 50 59-108 6-58 (62)
50 2yus_A SWI/SNF-related matrix- 99.4 6.3E-13 2.2E-17 96.1 5.2 48 58-105 15-62 (79)
51 2ckx_A NGTRF1, telomere bindin 99.3 2.7E-12 9.1E-17 93.6 6.9 48 62-109 1-53 (83)
52 2juh_A Telomere binding protei 99.3 3.6E-12 1.2E-16 98.9 6.3 55 54-108 10-69 (121)
53 2aje_A Telomere repeat-binding 99.3 5.5E-12 1.9E-16 95.7 7.0 54 56-109 8-66 (105)
54 1ign_A Protein (RAP1); RAP1,ye 99.3 2.4E-12 8.4E-17 110.0 4.9 55 57-111 4-64 (246)
55 2cjj_A Radialis; plant develop 99.3 2E-12 6.7E-17 96.2 3.0 51 4-55 4-57 (93)
56 2cjj_A Radialis; plant develop 99.2 2.2E-11 7.6E-16 90.5 7.3 51 60-110 7-61 (93)
57 2roh_A RTBP1, telomere binding 99.2 2.5E-11 8.5E-16 94.3 7.0 54 56-109 26-84 (122)
58 1x58_A Hypothetical protein 49 99.1 3E-11 1E-15 82.8 3.2 50 6-57 6-58 (62)
59 3hm5_A DNA methyltransferase 1 99.0 3.4E-10 1.2E-14 83.9 6.9 67 43-113 16-87 (93)
60 2eqr_A N-COR1, N-COR, nuclear 99.0 2.2E-10 7.6E-15 78.6 4.2 48 6-55 10-57 (61)
61 2eqr_A N-COR1, N-COR, nuclear 99.0 9.8E-10 3.4E-14 75.3 7.1 48 59-106 10-57 (61)
62 2cqq_A RSGI RUH-037, DNAJ homo 98.8 2E-09 6.8E-14 76.3 3.6 51 5-57 5-58 (72)
63 2cqq_A RSGI RUH-037, DNAJ homo 98.8 5.9E-09 2E-13 73.8 6.0 50 58-108 5-58 (72)
64 2iw5_B Protein corest, REST co 98.8 1.1E-08 3.8E-13 86.7 7.1 77 30-108 104-180 (235)
65 2iw5_B Protein corest, REST co 98.7 1.3E-08 4.4E-13 86.3 5.1 49 6-56 131-179 (235)
66 1fex_A TRF2-interacting telome 98.6 1.1E-08 3.7E-13 69.8 2.7 48 8-56 2-58 (59)
67 1wgx_A KIAA1903 protein; MYB D 98.6 2.7E-08 9.4E-13 70.5 4.5 49 8-57 8-59 (73)
68 2xag_B REST corepressor 1; ami 98.6 4.6E-08 1.6E-12 91.4 5.6 47 62-108 381-427 (482)
69 1wgx_A KIAA1903 protein; MYB D 98.6 1.3E-07 4.3E-12 67.1 6.3 48 61-108 8-59 (73)
70 1fex_A TRF2-interacting telome 98.4 3.2E-07 1.1E-11 62.4 5.3 47 61-107 2-58 (59)
71 1ug2_A 2610100B20RIK gene prod 98.3 1.2E-06 4.1E-11 64.0 5.7 48 61-108 33-83 (95)
72 1ofc_X ISWI protein; nuclear p 98.2 2.9E-06 9.9E-11 75.2 8.5 100 9-109 111-276 (304)
73 4eef_G F-HB80.4, designed hema 98.2 2.1E-07 7.1E-12 65.7 0.1 45 7-52 19-66 (74)
74 2yqk_A Arginine-glutamic acid 98.2 1.4E-06 4.6E-11 59.9 4.2 50 3-54 4-54 (63)
75 2yqk_A Arginine-glutamic acid 98.1 7.2E-06 2.5E-10 56.3 7.0 49 56-104 4-53 (63)
76 2lr8_A CAsp8-associated protei 97.4 3.1E-07 1.1E-11 63.6 0.0 44 63-107 16-62 (70)
77 3hm5_A DNA methyltransferase 1 98.0 2.5E-06 8.7E-11 63.0 3.5 50 6-56 28-81 (93)
78 4iej_A DNA methyltransferase 1 98.0 2E-05 6.7E-10 58.1 7.7 61 49-113 22-87 (93)
79 4eef_G F-HB80.4, designed hema 97.9 1.4E-06 4.8E-11 61.4 0.3 43 61-103 20-66 (74)
80 2xag_B REST corepressor 1; ami 97.9 1E-05 3.6E-10 75.6 5.0 47 7-55 379-425 (482)
81 4a69_C Nuclear receptor corepr 97.7 8.5E-05 2.9E-09 54.9 6.2 45 61-105 43-87 (94)
82 4a69_C Nuclear receptor corepr 97.7 2.8E-05 9.7E-10 57.5 3.5 45 8-54 43-87 (94)
83 2crg_A Metastasis associated p 97.6 3.4E-05 1.2E-09 54.0 3.5 46 7-54 7-53 (70)
84 2crg_A Metastasis associated p 97.6 0.00014 4.8E-09 50.8 6.5 44 61-104 8-52 (70)
85 1ug2_A 2610100B20RIK gene prod 97.6 3.1E-05 1E-09 56.6 2.9 46 10-56 35-82 (95)
86 2ebi_A DNA binding protein GT- 97.4 3.2E-05 1.1E-09 55.9 1.0 51 6-56 2-64 (86)
87 2lr8_A CAsp8-associated protei 96.3 4.3E-05 1.5E-09 52.9 0.0 45 10-56 16-62 (70)
88 2y9y_A Imitation switch protei 97.2 0.0015 5E-08 59.3 9.4 100 9-109 124-292 (374)
89 2ebi_A DNA binding protein GT- 97.1 0.00054 1.9E-08 49.3 4.5 48 61-108 4-65 (86)
90 4b4c_A Chromodomain-helicase-D 97.0 0.0013 4.5E-08 54.5 6.5 102 5-107 4-195 (211)
91 4iej_A DNA methyltransferase 1 96.5 0.002 6.9E-08 47.3 3.6 50 6-56 28-81 (93)
92 1irz_A ARR10-B; helix-turn-hel 94.1 0.067 2.3E-06 36.5 4.5 51 4-54 3-56 (64)
93 4b4c_A Chromodomain-helicase-D 93.9 0.067 2.3E-06 44.1 4.9 30 8-37 134-163 (211)
94 2xb0_X Chromo domain-containin 92.9 0.074 2.5E-06 46.2 3.8 28 10-37 170-197 (270)
95 1irz_A ARR10-B; helix-turn-hel 92.0 0.59 2E-05 31.7 6.6 47 59-105 5-56 (64)
96 1ofc_X ISWI protein; nuclear p 90.4 0.51 1.7E-05 41.5 6.4 46 62-107 111-157 (304)
97 2rq5_A Protein jumonji; develo 81.6 0.88 3E-05 34.6 2.7 57 18-77 46-113 (121)
98 2li6_A SWI/SNF chromatin-remod 76.9 1.2 4E-05 33.4 2.1 39 18-57 53-98 (116)
99 2y9y_A Imitation switch protei 75.5 2.8 9.6E-05 37.8 4.5 32 7-38 227-261 (374)
100 2jvw_A Uncharacterized protein 74.8 1.8 6.1E-05 31.0 2.4 45 16-73 18-69 (88)
101 1ig6_A MRF-2, modulator recogn 72.0 2 7E-05 31.5 2.3 40 18-57 37-87 (107)
102 2kk0_A AT-rich interactive dom 71.2 3.3 0.00011 32.2 3.5 60 18-77 68-140 (145)
103 2jrz_A Histone demethylase jar 71.1 1.8 6E-05 32.5 1.8 40 18-57 44-93 (117)
104 1c20_A DEAD ringer protein; DN 69.2 2 6.7E-05 32.7 1.7 40 18-57 56-106 (128)
105 2xb0_X Chromo domain-containin 68.5 16 0.00053 31.5 7.5 49 61-109 3-56 (270)
106 2cxy_A BAF250B subunit, HBAF25 67.0 2.4 8.1E-05 32.1 1.8 40 18-57 55-104 (125)
107 2jxj_A Histone demethylase jar 65.9 2.5 8.7E-05 30.3 1.7 40 18-57 40-89 (96)
108 2lm1_A Lysine-specific demethy 65.5 2.4 8.2E-05 31.0 1.5 40 18-57 48-97 (107)
109 2eqy_A RBP2 like, jumonji, at 63.7 3.1 0.00011 31.4 1.8 40 18-57 46-95 (122)
110 1kkx_A Transcription regulator 58.5 1.9 6.3E-05 32.8 -0.3 39 18-57 52-97 (123)
111 3e7l_A Transcriptional regulat 58.2 7.7 0.00026 25.3 2.9 29 14-43 19-47 (63)
112 2li6_A SWI/SNF chromatin-remod 58.2 9.4 0.00032 28.3 3.7 39 71-109 53-99 (116)
113 2o8x_A Probable RNA polymerase 57.3 17 0.00059 23.2 4.6 41 67-108 18-58 (70)
114 2lm1_A Lysine-specific demethy 56.0 23 0.00079 25.6 5.5 39 71-109 48-98 (107)
115 2jrz_A Histone demethylase jar 55.7 20 0.0007 26.5 5.2 42 71-112 44-97 (117)
116 1ku3_A Sigma factor SIGA; heli 53.9 21 0.00072 23.4 4.6 44 64-109 11-58 (73)
117 2eqy_A RBP2 like, jumonji, at 49.7 29 0.001 25.9 5.3 41 71-111 46-98 (122)
118 2cxy_A BAF250B subunit, HBAF25 49.1 30 0.001 25.8 5.3 41 71-111 55-107 (125)
119 2p7v_B Sigma-70, RNA polymeras 48.7 21 0.00072 23.0 3.9 40 68-108 9-52 (68)
120 1kkx_A Transcription regulator 44.9 14 0.00048 27.8 2.8 39 72-110 53-99 (123)
121 3hug_A RNA polymerase sigma fa 43.3 35 0.0012 23.4 4.6 41 68-109 41-81 (92)
122 1ntc_A Protein (nitrogen regul 41.8 17 0.00058 25.4 2.7 29 14-43 51-79 (91)
123 1umq_A Photosynthetic apparatu 41.0 20 0.0007 24.9 2.9 30 13-43 40-69 (81)
124 3eyi_A Z-DNA-binding protein 1 40.2 24 0.00083 24.2 3.1 37 11-48 7-43 (72)
125 1c20_A DEAD ringer protein; DN 39.7 53 0.0018 24.5 5.4 41 71-111 56-109 (128)
126 2rq5_A Protein jumonji; develo 39.2 44 0.0015 25.0 4.8 39 71-109 46-97 (121)
127 2kk0_A AT-rich interactive dom 38.5 50 0.0017 25.3 5.1 41 71-111 68-121 (145)
128 2p1m_A SKP1-like protein 1A; F 37.2 22 0.00076 27.6 2.9 36 32-75 119-154 (160)
129 3cz6_A DNA-binding protein RAP 36.7 20 0.00068 28.6 2.5 17 4-20 110-126 (168)
130 3i4p_A Transcriptional regulat 35.6 17 0.00058 28.0 2.0 43 14-58 3-45 (162)
131 1x3u_A Transcriptional regulat 34.6 92 0.0032 20.1 5.5 42 64-108 17-58 (79)
132 1tty_A Sigma-A, RNA polymerase 33.7 63 0.0022 21.8 4.6 40 68-108 22-65 (87)
133 3c57_A Two component transcrip 33.6 79 0.0027 21.8 5.2 43 63-108 27-69 (95)
134 1eto_A FIS, factor for inversi 32.7 32 0.0011 24.7 2.9 29 14-43 58-86 (98)
135 1or7_A Sigma-24, RNA polymeras 31.9 97 0.0033 23.4 6.0 30 78-108 154-183 (194)
136 3ulq_B Transcriptional regulat 31.2 1.1E+02 0.0037 21.1 5.6 45 61-108 27-71 (90)
137 3v7d_A Suppressor of kinetocho 31.0 26 0.0009 27.5 2.4 35 31-73 126-160 (169)
138 1je8_A Nitrate/nitrite respons 30.2 87 0.003 20.9 4.8 43 63-108 21-63 (82)
139 1u78_A TC3 transposase, transp 29.9 1.5E+02 0.0051 21.1 10.8 89 8-101 4-99 (141)
140 2yqf_A Ankyrin-1; death domain 29.5 95 0.0032 22.3 5.2 34 65-99 14-47 (111)
141 1xsv_A Hypothetical UPF0122 pr 29.0 1E+02 0.0035 22.1 5.3 40 68-108 29-68 (113)
142 1g2h_A Transcriptional regulat 27.2 55 0.0019 20.9 3.2 31 11-43 18-48 (61)
143 2ast_A S-phase kinase-associat 26.3 34 0.0012 26.3 2.3 35 32-74 120-154 (159)
144 2jpc_A SSRB; DNA binding prote 26.2 1.2E+02 0.0039 18.5 4.6 38 69-108 3-40 (61)
145 1k78_A Paired box protein PAX5 26.0 1.9E+02 0.0066 21.0 9.8 78 8-90 30-118 (149)
146 1fse_A GERE; helix-turn-helix 25.8 1.2E+02 0.0042 19.0 4.8 44 62-108 10-53 (74)
147 1rp3_A RNA polymerase sigma fa 24.9 1.1E+02 0.0038 23.7 5.3 35 73-108 196-230 (239)
148 2of5_H Leucine-rich repeat and 24.7 86 0.0029 22.9 4.2 29 69-98 13-41 (118)
149 2k27_A Paired box protein PAX- 24.6 2.1E+02 0.0073 21.1 10.1 66 9-79 24-99 (159)
150 2e1c_A Putative HTH-type trans 24.2 52 0.0018 25.5 3.0 43 14-58 27-69 (171)
151 3mzy_A RNA polymerase sigma-H 23.9 98 0.0034 22.4 4.5 29 79-108 123-151 (164)
152 1tc3_C Protein (TC3 transposas 23.1 1.1E+02 0.0037 17.1 4.4 36 9-48 4-39 (51)
153 1hlv_A CENP-B, major centromer 22.9 2E+02 0.0067 20.4 6.0 35 7-41 4-38 (131)
154 2glo_A Brinker CG9653-PA; prot 22.4 1.2E+02 0.004 18.8 4.0 42 7-53 2-47 (59)
155 2o71_A Death domain-containing 22.2 1.2E+02 0.0041 22.3 4.5 37 58-98 16-52 (115)
156 2q1z_A RPOE, ECF SIGE; ECF sig 21.9 50 0.0017 24.9 2.5 30 78-108 149-178 (184)
157 2of5_A Death domain-containing 21.1 1.1E+02 0.0038 22.4 4.2 39 56-98 14-52 (114)
158 2rnj_A Response regulator prot 21.0 1.1E+02 0.0036 20.8 3.8 43 63-108 29-71 (91)
159 2o71_A Death domain-containing 20.9 72 0.0025 23.5 3.1 25 16-41 24-48 (115)
No 1
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=100.00 E-value=8.8e-36 Score=227.15 Aligned_cols=104 Identities=48% Similarity=0.908 Sum_probs=99.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCCHH
Q 044161 5 KLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTEEEQIIIQLHKKWGNKWS 84 (229)
Q Consensus 5 ~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~~~G~~W~ 84 (229)
.+++|+||+|||++|+++|.+||.++|..||+.|| ||++.||++||.++|+|.+++++||+|||.+|+++|.+||++|+
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~ 79 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWA 79 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhc-CCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCCHHHHHHHHHHhhhHH
Q 044161 85 RIARNLPGRTDNEIKNYWRTRIRKK 109 (229)
Q Consensus 85 ~Ia~~l~gRt~~qiknrw~~~l~~~ 109 (229)
.||+.|||||+++|++||+.+++++
T Consensus 80 ~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 80 EIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999875
No 2
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=100.00 E-value=1.2e-35 Score=227.48 Aligned_cols=103 Identities=32% Similarity=0.598 Sum_probs=99.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHH
Q 044161 8 KGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTEEEQIIIQLHKKWGNKWSRIA 87 (229)
Q Consensus 8 kg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia 87 (229)
||+||+|||++|+++|.+||.++|..||..|| +|++.||++||.++|+|.+++++||+|||.+|+++|.+||++|+.||
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 79 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMI-TRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKIS 79 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTT-TSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcC-CCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHH
Confidence 68999999999999999999889999999999 99999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHhhhHHHH
Q 044161 88 RNLPGRTDNEIKNYWRTRIRKKIQ 111 (229)
Q Consensus 88 ~~l~gRt~~qiknrw~~~l~~~~~ 111 (229)
+.|||||+++|++||..++++..+
T Consensus 80 ~~l~gRt~~~~k~rw~~l~r~~~~ 103 (107)
T 2k9n_A 80 KFLKNRSDNNIRNRWMMIARHRAK 103 (107)
T ss_dssp HHHSSSCHHHHHHHHHHHHHHHHS
T ss_pred HHCCCCCHHHHHHHHHHHHhhHHH
Confidence 999999999999999999887644
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=100.00 E-value=6.7e-35 Score=229.86 Aligned_cols=107 Identities=46% Similarity=0.873 Sum_probs=102.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 044161 2 QEEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTEEEQIIIQLHKKWGN 81 (229)
Q Consensus 2 ~~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~~~G~ 81 (229)
..|.+++|+||+|||++|+++|.+||.++|..||+.|| ||++.||++||+++|+|.+++++||+|||.+|++++.+||+
T Consensus 21 l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~ 99 (128)
T 1h8a_C 21 LNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 99 (128)
T ss_dssp -CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSS-SCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred hCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhc-CCcHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHCc
Confidence 46889999999999999999999999888999999998 99999999999999999999999999999999999999999
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHhhhHH
Q 044161 82 KWSRIARNLPGRTDNEIKNYWRTRIRKK 109 (229)
Q Consensus 82 ~W~~Ia~~l~gRt~~qiknrw~~~l~~~ 109 (229)
+|+.||+.|||||+++|++||+.+++++
T Consensus 100 ~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 100 RWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp CHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998875
No 4
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=100.00 E-value=1.6e-34 Score=227.39 Aligned_cols=105 Identities=37% Similarity=0.656 Sum_probs=100.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 044161 3 EEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTEEEQIIIQLHKKWGNK 82 (229)
Q Consensus 3 ~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~~~G~~ 82 (229)
++..++|+||+|||++|+++|.+||. +|..||+.|| +|++.||++||.++|+|.+++++||+|||++|+++|.+||++
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~ 83 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFP-NRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQ 83 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCT-TCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcC-CCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcC
Confidence 46789999999999999999999995 9999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHhhhHH
Q 044161 83 WSRIARNLPGRTDNEIKNYWRTRIRKK 109 (229)
Q Consensus 83 W~~Ia~~l~gRt~~qiknrw~~~l~~~ 109 (229)
|+.||+.|||||+++|++||..++++.
T Consensus 84 W~~Ia~~l~gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 84 WAIIAKFFPGRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999999988764
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=100.00 E-value=6.7e-35 Score=230.90 Aligned_cols=106 Identities=41% Similarity=0.700 Sum_probs=102.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHH
Q 044161 7 SKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTEEEQIIIQLHKKWGNKWSRI 86 (229)
Q Consensus 7 kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~I 86 (229)
.||+||+|||++|+++|.+||.++|..||..|| ||++.||++||.++|+|.+++++||+|||.+|+++|.+||++|+.|
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 79 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLP-NRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVI 79 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCT-TSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHC-CCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHH
Confidence 379999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HhhCCCCCHHHHHHHHHHhhhHHHHHH
Q 044161 87 ARNLPGRTDNEIKNYWRTRIRKKIQAQ 113 (229)
Q Consensus 87 a~~l~gRt~~qiknrw~~~l~~~~~~~ 113 (229)
|++|||||+++|++||++++++.+...
T Consensus 80 a~~l~gRt~~~~k~rw~~~l~~~~~~~ 106 (131)
T 3zqc_A 80 AKLIPGRTDNAIKNRWNSSISKRISTN 106 (131)
T ss_dssp TTTSTTCCHHHHHHHHHHTTGGGCCCC
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999998876544
No 6
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.98 E-value=1.3e-32 Score=224.17 Aligned_cols=107 Identities=47% Similarity=0.879 Sum_probs=102.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC
Q 044161 2 QEEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTEEEQIIIQLHKKWGN 81 (229)
Q Consensus 2 ~~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~~~G~ 81 (229)
..|.+++|+||+|||++|+++|.+||.++|..||+.|| |||+.||++||.++|+|.+++++||+|||.+|++++.+||+
T Consensus 52 l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~ 130 (159)
T 1h89_C 52 LNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGN 130 (159)
T ss_dssp TCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTST-TCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCS
T ss_pred cCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcC-CCCHHHHHHHHHHHhCccccccCCChHHHHHHHHHHHHHCC
Confidence 36889999999999999999999999778999999998 99999999999999999999999999999999999999999
Q ss_pred CHHHHHhhCCCCCHHHHHHHHHHhhhHH
Q 044161 82 KWSRIARNLPGRTDNEIKNYWRTRIRKK 109 (229)
Q Consensus 82 ~W~~Ia~~l~gRt~~qiknrw~~~l~~~ 109 (229)
+|+.||++|||||+++|++||+.+++++
T Consensus 131 ~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 131 RWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp CHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred CHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999999998875
No 7
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=99.97 E-value=1.7e-31 Score=217.47 Aligned_cols=106 Identities=33% Similarity=0.656 Sum_probs=62.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC-CH
Q 044161 5 KLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTEEEQIIIQLHKKWGN-KW 83 (229)
Q Consensus 5 ~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~~~G~-~W 83 (229)
.+++|+||+|||++|+++|.+||.++|..||+.|| +|++.||++||.++|+|.+++++||+|||++|+++|.+||. +|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp -----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccH
Confidence 47899999999999999999999889999999998 99999999999999999999999999999999999999996 69
Q ss_pred HHHHhhCCCCCHHHHHHHHHHhhhHHHH
Q 044161 84 SRIARNLPGRTDNEIKNYWRTRIRKKIQ 111 (229)
Q Consensus 84 ~~Ia~~l~gRt~~qiknrw~~~l~~~~~ 111 (229)
..||..|||||+.||++||..++.+.+.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~ 109 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVK 109 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSC
T ss_pred HHHHHHcCCCCHHHHHHHHHHHhCcccc
Confidence 9999999999999999999999877543
No 8
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=5.3e-24 Score=151.00 Aligned_cols=67 Identities=31% Similarity=0.584 Sum_probs=64.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCCCCCCCCCHHHH
Q 044161 2 QEEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTEEE 69 (229)
Q Consensus 2 ~~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~~~WT~eEd 69 (229)
..|.+++|+||+|||++|+++|.+||.++|..||+.|+ +||+.||++||+++|+|.+++++||+|||
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd 69 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLH-RKSAKQCKARWYEWLDPSIKKTEWSGPSS 69 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHST-TCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhc-CCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence 46889999999999999999999999889999999999 99999999999999999999999999987
No 9
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=99.84 E-value=6.3e-22 Score=155.55 Aligned_cols=77 Identities=27% Similarity=0.645 Sum_probs=52.7
Q ss_pred HHHhhCCCCCcccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHhhhHHHH
Q 044161 34 IAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTEEEQIIIQLHKKWGN-KWSRIARNLPGRTDNEIKNYWRTRIRKKIQ 111 (229)
Q Consensus 34 IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~l~gRt~~qiknrw~~~l~~~~~ 111 (229)
||+.|| |||+.||+.||.++|+|.+++++||+|||++|+++|.+||. +|..||..|||||+.||++||..++.+.+.
T Consensus 1 Ia~~~~-~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~ 78 (128)
T 1h8a_C 1 MEAVIK-NRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVK 78 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSC
T ss_pred CccccC-CCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccc
Confidence 789998 99999999999999999999999999999999999999996 699999999999999999999999876543
No 10
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.83 E-value=4.8e-21 Score=163.63 Aligned_cols=106 Identities=22% Similarity=0.321 Sum_probs=92.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCC-----hhHHHHhhCCCCCcccccccccccccCCCC-----------------
Q 044161 3 EEKLSKGPWHEEEDELLVTFVTLFGERR-----WDYIAKASGLKRSGKSCGLRWLNYLCPNIK----------------- 60 (229)
Q Consensus 3 ~~~~kkg~WT~eEDe~L~~lv~~~g~~~-----W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~----------------- 60 (229)
.+.+++++||+|||+.|+++|.+||..+ |..||+.|| |||++|||+||+++|++.++
T Consensus 3 ~~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~Lp-GRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~G 81 (246)
T 1ign_A 3 LPSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVP-NHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDG 81 (246)
T ss_dssp -----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTST-TSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcC-CCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCC
Confidence 3568899999999999999999998532 999999999 99999999999999999997
Q ss_pred ------------CCCCCHHHHHHHHHHHHH-h--------------------------------CC--------------
Q 044161 61 ------------HGYISTEEEQIIIQLHKK-W--------------------------------GN-------------- 81 (229)
Q Consensus 61 ------------~~~WT~eEd~~L~~~v~~-~--------------------------------G~-------------- 81 (229)
+..||.+||-.|...+++ | |.
T Consensus 82 n~ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 161 (246)
T 1ign_A 82 NLIKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYR 161 (246)
T ss_dssp CBCEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------C
T ss_pred CceeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhc
Confidence 789999999999998876 2 11
Q ss_pred -----------CHHHHHhhCCCCCHHHHHHHHHHhhhHH
Q 044161 82 -----------KWSRIARNLPGRTDNEIKNYWRTRIRKK 109 (229)
Q Consensus 82 -----------~W~~Ia~~l~gRt~~qiknrw~~~l~~~ 109 (229)
.|.+||+.+|+||.+++|+||+.+++..
T Consensus 162 ~~~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~ 200 (246)
T 1ign_A 162 TQSRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY 200 (246)
T ss_dssp CCCCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred cccccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence 6999999999999999999999988765
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.78 E-value=1.3e-19 Score=124.55 Aligned_cols=58 Identities=31% Similarity=0.629 Sum_probs=55.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCCCC
Q 044161 2 QEEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIK 60 (229)
Q Consensus 2 ~~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~ 60 (229)
..|.+++++||+|||++|+++|.+||.++|..||+.|+ +||+.||++||.++|+|.++
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~l~p~i~ 59 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFP-NRTDQQCQYRWLRVLSGPSS 59 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCS-SSCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcc-CCCHHHHHHHHHHHcCCccC
Confidence 35889999999999999999999999889999999998 99999999999999999875
No 12
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.77 E-value=2.2e-19 Score=139.67 Aligned_cols=82 Identities=18% Similarity=0.385 Sum_probs=76.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhh----CCCCCccccccccccccc-----CCCCCC-CCCHHHHHHH
Q 044161 3 EEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKAS----GLKRSGKSCGLRWLNYLC-----PNIKHG-YISTEEEQII 72 (229)
Q Consensus 3 ~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l----~~~Rt~~qcr~Rw~~~L~-----p~~~~~-~WT~eEd~~L 72 (229)
.+..++++||+|||+.|+++|++||.++|+.|++.+ + +||+.+|++||+++|+ |.++++ +|+++|+.+|
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~-~RT~v~lKdRWrnllk~~~~~p~~krg~~~p~e~~~rv 90 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRV 90 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCS-SCCSHHHHHHHHHHHHHHHTCSTTCCCSCCCHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccC-CCCHHHHHHHHHHHHhhhccCCcccCCCCCCHHHHHHH
Confidence 456789999999999999999999988999999996 6 9999999999999998 999999 9999999999
Q ss_pred HHHHHHhCCCHHH
Q 044161 73 IQLHKKWGNKWSR 85 (229)
Q Consensus 73 ~~~v~~~G~~W~~ 85 (229)
+.++..+|++|+.
T Consensus 91 ~~~h~~~gn~~~~ 103 (121)
T 2juh_A 91 LAAHAYWSQQQGK 103 (121)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHccchhc
Confidence 9999999999965
No 13
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.76 E-value=2.6e-19 Score=119.61 Aligned_cols=52 Identities=48% Similarity=0.917 Sum_probs=49.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCC
Q 044161 6 LSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPN 58 (229)
Q Consensus 6 ~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~ 58 (229)
+++|+||+|||++|+++|.+||..+|..||+.|+ |||+.||++||.++|+|.
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLK-GRIGKQCRERWHNHLNPE 52 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTST-TCCHHHHHHHHHHTTSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5899999999999999999999778999999998 999999999999999984
No 14
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.75 E-value=4.1e-19 Score=118.56 Aligned_cols=52 Identities=37% Similarity=0.635 Sum_probs=48.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCC
Q 044161 6 LSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPN 58 (229)
Q Consensus 6 ~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~ 58 (229)
+++|+||+|||++|+++|.+||.++|..||+.|| |||+.||++||.++|+|.
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~Rw~~~L~P~ 52 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPE 52 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTST-TCCHHHHHHHHHHHHSCC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcC-CCCHHHHHHHHHHHcCcC
Confidence 5799999999999999999999779999999998 999999999999999984
No 15
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=124.59 Aligned_cols=60 Identities=27% Similarity=0.389 Sum_probs=47.9
Q ss_pred ccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhhh
Q 044161 47 CGLRWLNYLCPNIKHGYISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIR 107 (229)
Q Consensus 47 cr~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~ 107 (229)
.--||.++|+|.+++++||+|||++|++++.++|++|+.||+.| |||++|||+||+.+.+
T Consensus 9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRLMKD 68 (73)
T ss_dssp ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence 34589999999999999999999999999999999999999999 9999999999997543
No 16
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.74 E-value=1.7e-18 Score=134.87 Aligned_cols=78 Identities=21% Similarity=0.377 Sum_probs=72.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhh----CCCCCcccccccccccc-----cCCCCCCCCCHHH-HHHHH
Q 044161 4 EKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKAS----GLKRSGKSCGLRWLNYL-----CPNIKHGYISTEE-EQIII 73 (229)
Q Consensus 4 ~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l----~~~Rt~~qcr~Rw~~~L-----~p~~~~~~WT~eE-d~~L~ 73 (229)
...++++||+|||+.|+++|++||.++|+.|++.+ + +||+.||++||++++ +|.++++.|+++| +.+|+
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~-~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p~e~~~~v~ 105 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVH-HRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVL 105 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSC-CCCHHHHHHHHHHHHHHHHSCTTTCCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCccccCCCCCCHHHHHHHH
Confidence 45689999999999999999999988999999975 6 999999999999999 7999999999999 89999
Q ss_pred HHHHHhCCC
Q 044161 74 QLHKKWGNK 82 (229)
Q Consensus 74 ~~v~~~G~~ 82 (229)
+++..+|++
T Consensus 106 ~~h~~~g~~ 114 (122)
T 2roh_A 106 AAQAYWSVD 114 (122)
T ss_dssp HHHHHHHSS
T ss_pred HHHHHHhhH
Confidence 999999974
No 17
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.74 E-value=1.2e-18 Score=122.98 Aligned_cols=63 Identities=21% Similarity=0.259 Sum_probs=58.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCC-CCCcccccccccccccCCCCCCCCC
Q 044161 3 EEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGL-KRSGKSCGLRWLNYLCPNIKHGYIS 65 (229)
Q Consensus 3 ~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~-~Rt~~qcr~Rw~~~L~p~~~~~~WT 65 (229)
.+..++++||+|||++|+++|++||.++|..||+.|+. +||+.||++||+++|+|.+.++..+
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~ 68 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE 68 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence 56789999999999999999999998899999999975 8999999999999999999987653
No 18
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.73 E-value=2e-18 Score=120.40 Aligned_cols=57 Identities=25% Similarity=0.373 Sum_probs=50.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhC-CCCCcccccccccccccCCCC
Q 044161 4 EKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASG-LKRSGKSCGLRWLNYLCPNIK 60 (229)
Q Consensus 4 ~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~-~~Rt~~qcr~Rw~~~L~p~~~ 60 (229)
...+|++||+|||++|+++|.+||.++|..||+.++ .+||+.||++||+++++|.++
T Consensus 7 ~~~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN 64 (64)
T 3sjm_A 7 NITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN 64 (64)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence 346899999999999999999999889999999864 289999999999999999875
No 19
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=5.4e-18 Score=116.55 Aligned_cols=55 Identities=16% Similarity=0.384 Sum_probs=52.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCC
Q 044161 3 EEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPN 58 (229)
Q Consensus 3 ~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~ 58 (229)
.+.+++++||+|||++|+++|.+||.++|..||+.|| +||+.||++||.++|.+.
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~-~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMC-TKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHT-TSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhC-CCCHHHHHHHHHHHccCC
Confidence 4678999999999999999999999889999999999 999999999999999875
No 20
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.9e-17 Score=115.77 Aligned_cols=59 Identities=25% Similarity=0.281 Sum_probs=56.3
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhhhHHHHHH
Q 044161 54 YLCPNIKHGYISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRKKIQAQ 113 (229)
Q Consensus 54 ~L~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~~~~~~ 113 (229)
+|+|.+++++||+|||++|+++++++|++|..||+ ++|||+.||++||..++++.+++.
T Consensus 2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~ 60 (66)
T 2din_A 2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRD 60 (66)
T ss_dssp CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCC
Confidence 79999999999999999999999999999999999 889999999999999999987754
No 21
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=4.6e-18 Score=118.91 Aligned_cols=59 Identities=22% Similarity=0.313 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCCCCCCC
Q 044161 2 QEEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGY 63 (229)
Q Consensus 2 ~~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~~~ 63 (229)
-+|.+++++||+|||++|+++|..|| .+|..||+ ++ |||+.||++||.++|+|.++++.
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~-~~-gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAP-II-GRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHH-HH-SSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhc-cc-CcCHHHHHHHHHHHhChHhcCCC
Confidence 36899999999999999999999999 59999999 77 89999999999999998776653
No 22
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.67 E-value=3.1e-17 Score=109.94 Aligned_cols=50 Identities=26% Similarity=0.371 Sum_probs=47.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCC-CCCccccccccccccc
Q 044161 7 SKGPWHEEEDELLVTFVTLFGERRWDYIAKASGL-KRSGKSCGLRWLNYLC 56 (229)
Q Consensus 7 kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~-~Rt~~qcr~Rw~~~L~ 56 (229)
++|+||+|||++|+++|.+||.++|..||..||. +||+.||++||.++++
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence 6899999999999999999998899999999965 6999999999999876
No 23
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3e-17 Score=117.48 Aligned_cols=60 Identities=25% Similarity=0.416 Sum_probs=55.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC-----CChhHHHHhhCCCCCcccccccccccccCCCCCCC
Q 044161 3 EEKLSKGPWHEEEDELLVTFVTLFGE-----RRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGY 63 (229)
Q Consensus 3 ~~~~kkg~WT~eEDe~L~~lv~~~g~-----~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~~~ 63 (229)
+|.+++++||+|||++|+++|.+||. ++|..||+.|+ +||+.||+.||++||.+.++.|.
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~-~Rt~~qcr~r~~~~l~~~~k~g~ 67 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELG-NRTAKQVASQVQKYFIKLTKAGI 67 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHS-SSCHHHHHHHHHHHHGGGSTTCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhcCC
Confidence 68899999999999999999999996 78999999999 99999999999999998777654
No 24
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=9.2e-17 Score=110.19 Aligned_cols=55 Identities=20% Similarity=0.403 Sum_probs=51.6
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHhhhHHH
Q 044161 56 CPNIKHGYISTEEEQIIIQLHKKWG-NKWSRIARNLPGRTDNEIKNYWRTRIRKKI 110 (229)
Q Consensus 56 ~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~qiknrw~~~l~~~~ 110 (229)
+|.+++++||+|||++|+++|.+|| .+|..||..|+|||+.||++||..+|++.+
T Consensus 3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCcc
Confidence 5788999999999999999999999 599999999999999999999999998754
No 25
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=1.2e-16 Score=113.60 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=54.4
Q ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhhhHHHHH
Q 044161 55 LCPNIKHGYISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRKKIQA 112 (229)
Q Consensus 55 L~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~~~~~ 112 (229)
++|.+++++||+|||++|+++|.+||++|..||++|||||++|||+||..++++.++.
T Consensus 3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999886544
No 26
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.65 E-value=7.7e-17 Score=110.08 Aligned_cols=52 Identities=23% Similarity=0.399 Sum_probs=48.0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccc
Q 044161 4 EKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYL 55 (229)
Q Consensus 4 ~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L 55 (229)
..+.+++||+|||++|+++|++||.++|..||+.||.+||+.||++||.+++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 3467899999999999999999999999999999976899999999999875
No 27
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.65 E-value=4.4e-17 Score=115.90 Aligned_cols=57 Identities=28% Similarity=0.358 Sum_probs=53.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCCCCC
Q 044161 3 EEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKH 61 (229)
Q Consensus 3 ~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~ 61 (229)
.|.+++++||+|||++|+++|.+|| .+|..||+.|| |||+.||+.||.++|.+.++.
T Consensus 4 ~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~-~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 4 GSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIG-SRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp CCSSCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHS-SSCHHHHHHHHHHHHHHHSCS
T ss_pred CCCcCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHHHHHhc
Confidence 6889999999999999999999999 69999999999 999999999999999876665
No 28
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.64 E-value=2.6e-16 Score=104.86 Aligned_cols=50 Identities=26% Similarity=0.510 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 59 IKHGYISTEEEQIIIQLHKKWGN-KWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 59 ~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
+++++||+|||.+|+++|.+||. +|+.||+.|||||+.||++||..+|++
T Consensus 1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999998 999999999999999999999999875
No 29
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.62 E-value=5.1e-16 Score=103.46 Aligned_cols=50 Identities=32% Similarity=0.686 Sum_probs=47.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 59 IKHGYISTEEEQIIIQLHKKWGN-KWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 59 ~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
+++++||+|||++|+++|.+||. +|..||..|+|||+.||++||.++|++
T Consensus 1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999997 699999999999999999999998875
No 30
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=99.60 E-value=5.7e-16 Score=110.50 Aligned_cols=56 Identities=25% Similarity=0.241 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCCCCC
Q 044161 2 QEEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKH 61 (229)
Q Consensus 2 ~~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~ 61 (229)
.+|++++|+||+|||++|+++|.+|| ++|+.||+.| |||+.||++||+. |....+.
T Consensus 17 ldP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l--gRt~~q~knRw~~-L~~~~~~ 72 (73)
T 2llk_A 17 QGDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL--GRSASSVKDRCRL-MKDTCNT 72 (73)
T ss_dssp --CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH--TSCHHHHHHHHHH-CSCCCSC
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh--CCCHHHHHHHHHH-HHHHccC
Confidence 47899999999999999999999999 6799999999 7999999999985 5544443
No 31
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.59 E-value=9.9e-16 Score=107.94 Aligned_cols=59 Identities=25% Similarity=0.330 Sum_probs=53.8
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHhhhHHHHH
Q 044161 54 YLCPNIKHGYISTEEEQIIIQLHKKWG-NKWSRIARNLP--GRTDNEIKNYWRTRIRKKIQA 112 (229)
Q Consensus 54 ~L~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~--gRt~~qiknrw~~~l~~~~~~ 112 (229)
...+...+++||+|||++|+++|.+|| .+|+.||..|+ |||+.||++||++++++.+.+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k 64 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLIS 64 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCC
Confidence 346678899999999999999999999 69999999999 999999999999999887554
No 32
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1e-15 Score=108.10 Aligned_cols=56 Identities=29% Similarity=0.468 Sum_probs=52.2
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHhhhHHHH
Q 044161 56 CPNIKHGYISTEEEQIIIQLHKKWG-NKWSRIARNLPGRTDNEIKNYWRTRIRKKIQ 111 (229)
Q Consensus 56 ~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~qiknrw~~~l~~~~~ 111 (229)
.|.+++++||+|||++|+++|.+|| .+|..||..|+|||+.||++||.++|++.++
T Consensus 4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~ 60 (70)
T 2dim_A 4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIK 60 (70)
T ss_dssp CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCccc
Confidence 4678999999999999999999999 7999999999999999999999999987654
No 33
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.59 E-value=1.9e-15 Score=103.69 Aligned_cols=53 Identities=13% Similarity=0.249 Sum_probs=49.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 56 CPNIKHGYISTEEEQIIIQLHKKWG-NKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 56 ~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
++.+.+++||+|||++|+++|.+|| .+|..||++||+||+.||++||..++.+
T Consensus 3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccC
Confidence 4678899999999999999999999 7999999999999999999999988754
No 34
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.58 E-value=2.8e-15 Score=100.32 Aligned_cols=49 Identities=29% Similarity=0.427 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHhhhH
Q 044161 60 KHGYISTEEEQIIIQLHKKWG-NKWSRIARNLP--GRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 60 ~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~--gRt~~qiknrw~~~l~~ 108 (229)
++++||+|||++|+++|.+|| .+|+.||..|+ |||+.||++||.++++.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 478999999999999999999 69999999999 99999999999998864
No 35
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=99.55 E-value=1.2e-15 Score=120.20 Aligned_cols=82 Identities=22% Similarity=0.328 Sum_probs=60.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCC
Q 044161 3 EEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTEEEQIIIQLHKKWGNK 82 (229)
Q Consensus 3 ~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~~~G~~ 82 (229)
.|.+++|+||+|||++|+.+|.+|| ++|+.||+.|| |||+.||+.||+++|++.+..++|+.+--. .......+
T Consensus 49 ~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~-gRt~~~~k~rw~~~l~~~~~~~~~~~~~~~----p~~~kk~~ 122 (131)
T 3zqc_A 49 DPAVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIP-GRTDNAIKNRWNSSISKRISTNSNHKEILL----PDRSKKRK 122 (131)
T ss_dssp STTCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTST-TCCHHHHHHHHHHTTGGGCCCCTTSCCCCC----CCCC----
T ss_pred CccccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHHHHhhcCCCcccccC----chhhhhhh
Confidence 6889999999999999999999999 88999999998 999999999999999999999988765210 01122345
Q ss_pred HHHHHhhC
Q 044161 83 WSRIARNL 90 (229)
Q Consensus 83 W~~Ia~~l 90 (229)
|..|++.+
T Consensus 123 ~~~i~k~~ 130 (131)
T 3zqc_A 123 AADVPKKL 130 (131)
T ss_dssp --------
T ss_pred hhhcchhc
Confidence 77776654
No 36
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.54 E-value=7.7e-15 Score=102.11 Aligned_cols=52 Identities=33% Similarity=0.541 Sum_probs=46.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC--CCCHHHHHHHHHHhhhHHH
Q 044161 59 IKHGYISTEEEQIIIQLHKKWG-NKWSRIARNLP--GRTDNEIKNYWRTRIRKKI 110 (229)
Q Consensus 59 ~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~--gRt~~qiknrw~~~l~~~~ 110 (229)
.++++||+|||++|+++|.+|| .+|+.||+.++ |||+.||++||++++++.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence 4688999999999999999999 48999999976 9999999999999987653
No 37
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.53 E-value=9.8e-15 Score=106.56 Aligned_cols=69 Identities=20% Similarity=0.367 Sum_probs=59.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHHHh----hCCCCCcccccccccccc-----cCCCCCC-CCCHHHHHHHHHHHHH
Q 044161 9 GPWHEEEDELLVTFVTLFGERRWDYIAKA----SGLKRSGKSCGLRWLNYL-----CPNIKHG-YISTEEEQIIIQLHKK 78 (229)
Q Consensus 9 g~WT~eEDe~L~~lv~~~g~~~W~~IA~~----l~~~Rt~~qcr~Rw~~~L-----~p~~~~~-~WT~eEd~~L~~~v~~ 78 (229)
++||+|||+.|+++|++||.++|+.|++. |+ +||+.+|++||++++ +|.++++ +..++....++.++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~-~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~ 79 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNAD-HRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY 79 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCT-TSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccC-CCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 58999999999999999998899999996 77 999999999999998 5766655 5667777778877754
No 38
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.53 E-value=5.6e-15 Score=112.26 Aligned_cols=77 Identities=21% Similarity=0.380 Sum_probs=65.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhh----CCCCCcccccccccccc-----cCCCCCCCCCHHHHHH-H
Q 044161 3 EEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKAS----GLKRSGKSCGLRWLNYL-----CPNIKHGYISTEEEQI-I 72 (229)
Q Consensus 3 ~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l----~~~Rt~~qcr~Rw~~~L-----~p~~~~~~WT~eEd~~-L 72 (229)
.+..++++||+|||+.|+++|++||.++|+.|++.+ + +||+.+|++||++++ +|.++++.-+++|-.. +
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~-~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv 86 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDAD-HRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV 86 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTT-CCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccC-CCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence 467899999999999999999999988999999976 5 999999999999999 6888888877766554 6
Q ss_pred HHHHHHhC
Q 044161 73 IQLHKKWG 80 (229)
Q Consensus 73 ~~~v~~~G 80 (229)
++++..+|
T Consensus 87 ~~~~~~~~ 94 (105)
T 2aje_A 87 LNAHGYWT 94 (105)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 67666544
No 39
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5.6e-15 Score=105.58 Aligned_cols=56 Identities=21% Similarity=0.312 Sum_probs=51.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhC------CCHHHHHhhCCCCCHHHHHHHHHHhhhHHHH
Q 044161 56 CPNIKHGYISTEEEQIIIQLHKKWG------NKWSRIARNLPGRTDNEIKNYWRTRIRKKIQ 111 (229)
Q Consensus 56 ~p~~~~~~WT~eEd~~L~~~v~~~G------~~W~~Ia~~l~gRt~~qiknrw~~~l~~~~~ 111 (229)
+|.+.+++||+|||++|+++|.+|| .+|..||.+|+|||..||++||..++.+.++
T Consensus 3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k 64 (75)
T 2yum_A 3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTK 64 (75)
T ss_dssp CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGST
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence 5788999999999999999999999 7899999999999999999999988877543
No 40
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.52 E-value=2.2e-14 Score=97.85 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=46.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHhhCC-CCCHHHHHHHHHHhh
Q 044161 57 PNIKHGYISTEEEQIIIQLHKKWG-NKWSRIARNLP-GRTDNEIKNYWRTRI 106 (229)
Q Consensus 57 p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~-gRt~~qiknrw~~~l 106 (229)
..+.+++||+|||.+|+++|.+|| .+|..||++|+ +||+.||++||..++
T Consensus 5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence 456688999999999999999999 89999999999 999999999998764
No 41
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.24 E-value=1.9e-15 Score=111.77 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=53.5
Q ss_pred ccccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhhhHH
Q 044161 53 NYLCPNIKHGYISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRKK 109 (229)
Q Consensus 53 ~~L~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~~ 109 (229)
..+.|.+++++||+|||.+|+++|.+||++|+.||..|||||++||++||..++++.
T Consensus 8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 356788999999999999999999999999999999999999999999999988764
No 42
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=99.22 E-value=2.7e-15 Score=110.91 Aligned_cols=54 Identities=28% Similarity=0.401 Sum_probs=50.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccC
Q 044161 2 QEEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCP 57 (229)
Q Consensus 2 ~~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p 57 (229)
..|.+++|+||+|||++|+++|..|| .+|..||..|| |||+.||++||+++|..
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~l~-gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVG-SKTVSQCKNFYFNYKKR 63 (89)
Confidence 35789999999999999999999999 68999999999 99999999999999874
No 43
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.48 E-value=2.5e-14 Score=103.55 Aligned_cols=49 Identities=22% Similarity=0.548 Sum_probs=46.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCccccccccccc
Q 044161 4 EKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNY 54 (229)
Q Consensus 4 ~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~ 54 (229)
....+++||+|||++|+++|++|| ++|..||+.|| +||+.||+.||.++
T Consensus 14 ~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~-~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 14 GASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVG-SRTQDECILHFLRL 62 (79)
T ss_dssp SSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHS-SCCHHHHHHHHTTS
T ss_pred ccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHh
Confidence 345689999999999999999999 99999999999 99999999999998
No 44
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.47 E-value=2e-14 Score=108.78 Aligned_cols=55 Identities=25% Similarity=0.456 Sum_probs=50.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCC
Q 044161 2 QEEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPN 58 (229)
Q Consensus 2 ~~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~ 58 (229)
..|.+++|+||+|||++|+.+|.+|| .+|+.||+.|| |||+.||+.||+.+|++.
T Consensus 50 l~p~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~-gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 50 LNPEVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLP-GRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp TCCCCCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCT-TCCHHHHHHHHHHHTC--
T ss_pred cCCcccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHHHhcc
Confidence 36889999999999999999999999 78999999998 999999999999988754
No 45
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.44 E-value=2.7e-14 Score=101.78 Aligned_cols=54 Identities=20% Similarity=0.455 Sum_probs=48.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhC---CCChhHHHHhhCCCCCcccccccccccccC
Q 044161 3 EEKLSKGPWHEEEDELLVTFVTLFG---ERRWDYIAKASGLKRSGKSCGLRWLNYLCP 57 (229)
Q Consensus 3 ~~~~kkg~WT~eEDe~L~~lv~~~g---~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p 57 (229)
++...+++||+|||.+|+.+|..|| .++|..||+.|| |||+.||+.||.+++..
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vp-GRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVP-SKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCS-SSCHHHHHHHHHHHHSS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 5667889999999999999999999 368999999999 99999999999987653
No 46
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=99.44 E-value=2.9e-14 Score=108.49 Aligned_cols=53 Identities=30% Similarity=0.522 Sum_probs=50.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccC
Q 044161 3 EEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCP 57 (229)
Q Consensus 3 ~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p 57 (229)
.|++++|+||+|||++|+.+|.+|| .+|..||+.|| |||+.||+.||..++++
T Consensus 48 ~p~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~-gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 48 NPALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLK-NRSDNNIRNRWMMIARH 100 (107)
T ss_dssp SSCCTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHS-SSCHHHHHHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHHHHhC-cCHHHHHHHCC-CCCHHHHHHHHHHHHhh
Confidence 6889999999999999999999999 78999999998 99999999999988765
No 47
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.42 E-value=2.1e-13 Score=97.15 Aligned_cols=52 Identities=10% Similarity=0.310 Sum_probs=47.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 57 PNIKHGYISTEEEQIIIQLHKKWG----NKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 57 p~~~~~~WT~eEd~~L~~~v~~~G----~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
+.+.+++||.+||.+|++++..|| ++|..||++|||||..||++||..+++.
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 457789999999999999999999 7899999999999999999999988653
No 48
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=99.39 E-value=1.1e-13 Score=108.28 Aligned_cols=53 Identities=34% Similarity=0.589 Sum_probs=50.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccC
Q 044161 3 EEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCP 57 (229)
Q Consensus 3 ~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p 57 (229)
.|.+++|+||+|||++|+.+|.+|| .+|..||+.|| |||+.||++||.++++.
T Consensus 57 ~p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~-gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 57 APSISHTPWTAEEDALLVQKIQEYG-RQWAIIAKFFP-GRTDIHIKNRWVTISNK 109 (126)
T ss_dssp STTSCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTST-TCCHHHHHHHHHHHHHH
T ss_pred ccccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 5889999999999999999999999 88999999998 99999999999998753
No 49
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.38 E-value=7e-13 Score=91.00 Aligned_cols=50 Identities=20% Similarity=0.288 Sum_probs=46.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHH---hhCCCCCHHHHHHHHHHhhhH
Q 044161 59 IKHGYISTEEEQIIIQLHKKWGNKWSRIA---RNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 59 ~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia---~~l~gRt~~qiknrw~~~l~~ 108 (229)
-++.+||+||++.|+++|++||.+|+.|+ .++++||..+||+||++++++
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhc
Confidence 36789999999999999999999999999 578999999999999998875
No 50
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.35 E-value=6.3e-13 Score=96.11 Aligned_cols=48 Identities=10% Similarity=0.257 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHh
Q 044161 58 NIKHGYISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTR 105 (229)
Q Consensus 58 ~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~ 105 (229)
...+++||+|||.+|++++.+||.+|..||+++++||..||++||..+
T Consensus 15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL 62 (79)
T ss_dssp SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999999999764
No 51
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.32 E-value=2.7e-12 Score=93.61 Aligned_cols=48 Identities=19% Similarity=0.420 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHhhhHH
Q 044161 62 GYISTEEEQIIIQLHKKWGN-KWSRIARN----LPGRTDNEIKNYWRTRIRKK 109 (229)
Q Consensus 62 ~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~----l~gRt~~qiknrw~~~l~~~ 109 (229)
.+||+|||+.|+++|++||. +|+.|++. |+|||+++||+||+++++..
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~ 53 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTA 53 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhc
Confidence 48999999999999999998 99999996 89999999999999998754
No 52
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.29 E-value=3.6e-12 Score=98.94 Aligned_cols=55 Identities=18% Similarity=0.355 Sum_probs=50.6
Q ss_pred cccCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHhhhH
Q 044161 54 YLCPNIKHGYISTEEEQIIIQLHKKWGN-KWSRIARN----LPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 54 ~L~p~~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~----l~gRt~~qiknrw~~~l~~ 108 (229)
-+.+..++++||.|||+.|+++|.+||. +|+.|++. |+|||+.+||+||+++++.
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 3567788999999999999999999998 99999998 4899999999999999974
No 53
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.28 E-value=5.5e-12 Score=95.71 Aligned_cols=54 Identities=20% Similarity=0.337 Sum_probs=48.4
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhhC----CCCCHHHHHHHHHHhhhHH
Q 044161 56 CPNIKHGYISTEEEQIIIQLHKKWGN-KWSRIARNL----PGRTDNEIKNYWRTRIRKK 109 (229)
Q Consensus 56 ~p~~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~l----~gRt~~qiknrw~~~l~~~ 109 (229)
.+..++++||+|||+.|+++|++||. +|+.|++.+ ++||+.+||+||+++++..
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 45678899999999999999999997 999999975 8999999999999998653
No 54
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=99.27 E-value=2.4e-12 Score=109.96 Aligned_cols=55 Identities=22% Similarity=0.514 Sum_probs=48.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCC------HHHHHhhCCCCCHHHHHHHHHHhhhHHHH
Q 044161 57 PNIKHGYISTEEEQIIIQLHKKWGNK------WSRIARNLPGRTDNEIKNYWRTRIRKKIQ 111 (229)
Q Consensus 57 p~~~~~~WT~eEd~~L~~~v~~~G~~------W~~Ia~~l~gRt~~qiknrw~~~l~~~~~ 111 (229)
+.+++++||+|||++|+++|+++|++ |.+||+.|||||++|||+||+.+|++.+.
T Consensus 4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence 45778999999999999999999986 99999999999999999999999988754
No 55
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.25 E-value=2e-12 Score=96.24 Aligned_cols=51 Identities=18% Similarity=0.404 Sum_probs=44.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhC---CCChhHHHHhhCCCCCcccccccccccc
Q 044161 4 EKLSKGPWHEEEDELLVTFVTLFG---ERRWDYIAKASGLKRSGKSCGLRWLNYL 55 (229)
Q Consensus 4 ~~~kkg~WT~eEDe~L~~lv~~~g---~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L 55 (229)
....+++||+|||++|++++.+|| .++|..||+.|| |||+.||+.||.+++
T Consensus 4 ~~~~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp-GRT~~q~k~ry~~l~ 57 (93)
T 2cjj_A 4 TRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAVE-GRTPEEVKKHYEILV 57 (93)
T ss_dssp ----CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 344578999999999999999997 468999999999 999999999999875
No 56
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=99.22 E-value=2.2e-11 Score=90.53 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=46.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHhhhHHH
Q 044161 60 KHGYISTEEEQIIIQLHKKWG----NKWSRIARNLPGRTDNEIKNYWRTRIRKKI 110 (229)
Q Consensus 60 ~~~~WT~eEd~~L~~~v~~~G----~~W~~Ia~~l~gRt~~qiknrw~~~l~~~~ 110 (229)
.+++||.|||.+|++++..|| ++|..||..|||||.++|++||..++....
T Consensus 7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~ 61 (93)
T 2cjj_A 7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIK 61 (93)
T ss_dssp -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 467999999999999999996 789999999999999999999999886643
No 57
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.20 E-value=2.5e-11 Score=94.34 Aligned_cols=54 Identities=15% Similarity=0.362 Sum_probs=48.5
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHhh----CCCCCHHHHHHHHHHhhhHH
Q 044161 56 CPNIKHGYISTEEEQIIIQLHKKWGN-KWSRIARN----LPGRTDNEIKNYWRTRIRKK 109 (229)
Q Consensus 56 ~p~~~~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~----l~gRt~~qiknrw~~~l~~~ 109 (229)
....++++||.|||+.|+++|++||. +|+.|++. |++||..+||+||+++++..
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~ 84 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTA 84 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence 44567899999999999999999997 99999997 48999999999999998653
No 58
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.11 E-value=3e-11 Score=82.83 Aligned_cols=50 Identities=16% Similarity=0.240 Sum_probs=44.6
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhHHHH---hhCCCCCcccccccccccccC
Q 044161 6 LSKGPWHEEEDELLVTFVTLFGERRWDYIAK---ASGLKRSGKSCGLRWLNYLCP 57 (229)
Q Consensus 6 ~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~---~l~~~Rt~~qcr~Rw~~~L~p 57 (229)
.++.+||+|||+.|+++|++|| .+|+.|+. .++ +||...+++||++..+.
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G-~~W~~I~~~y~f~~-~RT~VdLKdk~r~L~k~ 58 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQK-GRRAVDLAHKYHRLISG 58 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCT-TCCHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHHh-HhHHHHHHhCCCcc-CcccchHHHHHHHHHhc
Confidence 4788999999999999999999 59999994 555 99999999999987654
No 59
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=99.05 E-value=3.4e-10 Score=83.85 Aligned_cols=67 Identities=12% Similarity=0.166 Sum_probs=60.0
Q ss_pred CcccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhC-----CCCCHHHHHHHHHHhhhHHHHHH
Q 044161 43 SGKSCGLRWLNYLCPNIKHGYISTEEEQIIIQLHKKWGNKWSRIARNL-----PGRTDNEIKNYWRTRIRKKIQAQ 113 (229)
Q Consensus 43 t~~qcr~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l-----~gRt~~qiknrw~~~l~~~~~~~ 113 (229)
-+.=+.++|.++|.+ .+||.||+..|++++++||.+|..|+..+ ++||..+||+||..+.++.+...
T Consensus 16 i~~yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 16 VPVYSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp CCCCCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCccCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 345678999999986 89999999999999999999999999999 58999999999999988776654
No 60
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=2.2e-10 Score=78.59 Aligned_cols=48 Identities=17% Similarity=0.233 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccc
Q 044161 6 LSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYL 55 (229)
Q Consensus 6 ~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L 55 (229)
...++||+||++++.+++.+|| .+|..||..|| +||..||..+|....
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~-~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLE-RKSVPDCVLYYYLTK 57 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCT-TSCHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcC-CCCHHHHHHHHHHhc
Confidence 4568999999999999999999 89999999999 999999999997654
No 61
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=9.8e-10 Score=75.34 Aligned_cols=48 Identities=13% Similarity=0.089 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhh
Q 044161 59 IKHGYISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRI 106 (229)
Q Consensus 59 ~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l 106 (229)
-..++||+||+.++++++..||.+|..||.+||+||..+|.++|....
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~K 57 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTK 57 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHT
T ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 345799999999999999999999999999999999999999997654
No 62
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.82 E-value=2e-09 Score=76.31 Aligned_cols=51 Identities=22% Similarity=0.241 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC---CCChhHHHHhhCCCCCcccccccccccccC
Q 044161 5 KLSKGPWHEEEDELLVTFVTLFG---ERRWDYIAKASGLKRSGKSCGLRWLNYLCP 57 (229)
Q Consensus 5 ~~kkg~WT~eEDe~L~~lv~~~g---~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p 57 (229)
..+.+.||.|||++|.+++.+|+ .+.|..||+.| |||..+|+.||..+...
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l--gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL--GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH--TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh--CCCHHHHHHHHHHHHHh
Confidence 45678999999999999999997 36799999998 59999999999887654
No 63
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.82 E-value=5.9e-09 Score=73.85 Aligned_cols=50 Identities=16% Similarity=0.265 Sum_probs=44.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 58 NIKHGYISTEEEQIIIQLHKKWG----NKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 58 ~~~~~~WT~eEd~~L~~~v~~~G----~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
..+.+.||.||+++|.+++..|+ .+|..||..+ |||..+|++||..+.+.
T Consensus 5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHh
Confidence 34578999999999999999997 6799999998 99999999999887543
No 64
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.77 E-value=1.1e-08 Score=86.74 Aligned_cols=77 Identities=14% Similarity=0.176 Sum_probs=56.9
Q ss_pred ChhHHHHhhCCCCCcccccccccccccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 30 RWDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 30 ~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
+|..+-..|. .+....+. +++.--.......+||+||..++++++..||++|..||+.+++||..||+++|....++
T Consensus 104 ~~kQ~~~~L~-~~~~~~Ie-~~R~pe~~~k~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 104 NIKQTNSALK-EKLDGGIE-PYRLPEVIQKCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp HHHHHHHHHH-HHSTTTTG-GGCCCCCCCCCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHH-HHHHhhcc-cccCCCCCCccCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 4555555553 33332222 33332122334679999999999999999999999999999999999999999987765
No 65
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.69 E-value=1.3e-08 Score=86.33 Aligned_cols=49 Identities=24% Similarity=0.391 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCccccccccccccc
Q 044161 6 LSKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLC 56 (229)
Q Consensus 6 ~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~ 56 (229)
...++||+||++++++++.+|| ++|..||+.|| +||..||+.+|+++.+
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~Vg-TKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHS-SCCHHHHHHHHHHTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 3467999999999999999999 89999999999 9999999999998865
No 66
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.64 E-value=1.1e-08 Score=69.76 Aligned_cols=48 Identities=23% Similarity=0.349 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChhHHHH-hhCCCCCccccccccccccc
Q 044161 8 KGPWHEEEDELLVTFVTLF--------GERRWDYIAK-ASGLKRSGKSCGLRWLNYLC 56 (229)
Q Consensus 8 kg~WT~eEDe~L~~lv~~~--------g~~~W~~IA~-~l~~~Rt~~qcr~Rw~~~L~ 56 (229)
+.+||+|||+.|+.+|.+| |..-|..+|+ .++ ++|-.+||+||.++|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~-~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLT-QHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSS-SCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCC-CCCHHHHHHHHHHHcc
Confidence 6789999999999999999 5456999999 788 9999999999999875
No 67
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.63 E-value=2.7e-08 Score=70.48 Aligned_cols=49 Identities=22% Similarity=0.387 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CChhHHHHhhCCCCCcccccccccccccC
Q 044161 8 KGPWHEEEDELLVTFVTLFGE---RRWDYIAKASGLKRSGKSCGLRWLNYLCP 57 (229)
Q Consensus 8 kg~WT~eEDe~L~~lv~~~g~---~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p 57 (229)
...||.+|+.+|..++..|+. .+|..||..|| |||..+|+.||..++..
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~-gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG-SRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT-TSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC-CCCHHHHHHHHHHHHhc
Confidence 457999999999999999975 47999999999 99999999999987654
No 68
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.57 E-value=4.6e-08 Score=91.41 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 62 GYISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 62 ~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
..||.+|-.++++++.+||..|..||..++.||..|||++|....++
T Consensus 381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 427 (482)
T ss_dssp SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999765443
No 69
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.56 E-value=1.3e-07 Score=67.07 Aligned_cols=48 Identities=17% Similarity=0.170 Sum_probs=43.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 61 HGYISTEEEQIIIQLHKKWGN----KWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 61 ~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
...||.+|+.+|.++...|+. +|..||..+||||..+|+.||..+++.
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999984 699999999999999999999987543
No 70
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=98.42 E-value=3.2e-07 Score=62.39 Aligned_cols=47 Identities=17% Similarity=0.372 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCC-HHHHHh-hCCCCCHHHHHHHHHHhhh
Q 044161 61 HGYISTEEEQIIIQLHKKW--------GNK-WSRIAR-NLPGRTDNEIKNYWRTRIR 107 (229)
Q Consensus 61 ~~~WT~eEd~~L~~~v~~~--------G~~-W~~Ia~-~l~gRt~~qiknrw~~~l~ 107 (229)
+.+||+|||..|++.|.++ |++ |.++|+ .+|++|-.++|+||...|+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence 5689999999999999999 443 999999 7999999999999988664
No 71
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=98.27 E-value=1.2e-06 Score=64.05 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 61 HGYISTEEEQIIIQLHKKWGN---KWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 61 ~~~WT~eEd~~L~~~v~~~G~---~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
---||.|||..|+..+++.|. .|..||+.|.+|+.+||++||..+++=
T Consensus 33 VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~L 83 (95)
T 1ug2_A 33 VVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp CSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHH
T ss_pred EEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 346999999999999999986 799999999999999999999998753
No 72
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=98.23 E-value=2.9e-06 Score=75.21 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=80.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCccccccccccc----------------------------------
Q 044161 9 GPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNY---------------------------------- 54 (229)
Q Consensus 9 g~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~---------------------------------- 54 (229)
+.||..+...++.++.+||..+|..||..|+ |+|...++..+.-+
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~-~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l 189 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVE-GKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKAL 189 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSST-TCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhc-CCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4699999999999999999999999999998 99998885422111
Q ss_pred -------------c---cCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHh------------hCCCCCHHHHHHHH
Q 044161 55 -------------L---CPNIKHGYISTEEEQIIIQLHKKWGN----KWSRIAR------------NLPGRTDNEIKNYW 102 (229)
Q Consensus 55 -------------L---~p~~~~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~------------~l~gRt~~qiknrw 102 (229)
| .+.-+...||++||..|+-.+.+||- .|..|.. ++..||+.+|..|.
T Consensus 190 ~~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc 269 (304)
T 1ofc_X 190 DQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRC 269 (304)
T ss_dssp HHHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHH
T ss_pred HHHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence 0 02224468999999999999999995 5999962 34669999999999
Q ss_pred HHhhhHH
Q 044161 103 RTRIRKK 109 (229)
Q Consensus 103 ~~~l~~~ 109 (229)
.++++-.
T Consensus 270 ~tLi~~i 276 (304)
T 1ofc_X 270 NTLITLI 276 (304)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988643
No 73
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=98.19 E-value=2.1e-07 Score=65.66 Aligned_cols=45 Identities=18% Similarity=0.341 Sum_probs=39.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCC---ChhHHHHhhCCCCCccccccccc
Q 044161 7 SKGPWHEEEDELLVTFVTLFGER---RWDYIAKASGLKRSGKSCGLRWL 52 (229)
Q Consensus 7 kkg~WT~eEDe~L~~lv~~~g~~---~W~~IA~~l~~~Rt~~qcr~Rw~ 52 (229)
..+.||.+|+.+|..++..|+.. .|.+||+.|| |||..+|+.+|.
T Consensus 19 ss~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp-GKT~eEVk~hY~ 66 (74)
T 4eef_G 19 SGRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK-GRTPEEVKKHYE 66 (74)
T ss_dssp ---CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC-SSCHHHHHGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC-CCCHHHHHHHHH
Confidence 34689999999999999999753 7999999999 999999999984
No 74
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=1.4e-06 Score=59.95 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=45.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCChhHHHH-hhCCCCCccccccccccc
Q 044161 3 EEKLSKGPWHEEEDELLVTFVTLFGERRWDYIAK-ASGLKRSGKSCGLRWLNY 54 (229)
Q Consensus 3 ~~~~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~-~l~~~Rt~~qcr~Rw~~~ 54 (229)
+|.++...||+||-++..+++.+|| .+|..||+ .|+ +|+..||...|...
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~w 54 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLP-NKETGELITFYYYW 54 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCT-TSCHHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCcHHHHHHHHhcc
Confidence 6888899999999999999999999 78999999 588 99999999888644
No 75
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=7.2e-06 Score=56.27 Aligned_cols=49 Identities=14% Similarity=0.303 Sum_probs=44.8
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHHHHHH
Q 044161 56 CPNIKHGYISTEEEQIIIQLHKKWGNKWSRIAR-NLPGRTDNEIKNYWRT 104 (229)
Q Consensus 56 ~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~-~l~gRt~~qiknrw~~ 104 (229)
.|.+....||+||-.+..+++..||..|..|++ .+++||..+|...|..
T Consensus 4 ~p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 53 (63)
T 2yqk_A 4 GSSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYY 53 (63)
T ss_dssp CCCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred CCCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhc
Confidence 367778899999999999999999999999999 5899999999998864
No 76
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=97.42 E-value=3.1e-07 Score=63.64 Aligned_cols=44 Identities=14% Similarity=0.389 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHhCC---CHHHHHhhCCCCCHHHHHHHHHHhhh
Q 044161 63 YISTEEEQIIIQLHKKWGN---KWSRIARNLPGRTDNEIKNYWRTRIR 107 (229)
Q Consensus 63 ~WT~eEd~~L~~~v~~~G~---~W~~Ia~~l~gRt~~qiknrw~~~l~ 107 (229)
-||.|||..|+..+++.|. .|..||+.| +||++||++||..+++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK 62 (70)
Confidence 6999999999999999997 799999999 9999999999998764
No 77
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=98.05 E-value=2.5e-06 Score=63.01 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=44.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhC----CCCCccccccccccccc
Q 044161 6 LSKGPWHEEEDELLVTFVTLFGERRWDYIAKASG----LKRSGKSCGLRWLNYLC 56 (229)
Q Consensus 6 ~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~----~~Rt~~qcr~Rw~~~L~ 56 (229)
+...+||.||+..|..|+.+|+ .+|..|+..+. .+||..++++||..+..
T Consensus 28 L~~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~ 81 (93)
T 3hm5_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHHHH
Confidence 4458999999999999999999 88999999992 27999999999988654
No 78
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=98.01 E-value=2e-05 Score=58.12 Aligned_cols=61 Identities=13% Similarity=0.225 Sum_probs=51.9
Q ss_pred ccccccccCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCC-----CCCHHHHHHHHHHhhhHHHHHH
Q 044161 49 LRWLNYLCPNIKHGYISTEEEQIIIQLHKKWGNKWSRIARNLP-----GRTDNEIKNYWRTRIRKKIQAQ 113 (229)
Q Consensus 49 ~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~-----gRt~~qiknrw~~~l~~~~~~~ 113 (229)
+.|..+|. ...||.||...|+++++.|+-+|..|+..+. .||-.++|+||..+.++.+..+
T Consensus 22 eEY~~~L~----~~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 22 QEYQLYLH----DDAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp HHHHHHTC----BTTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC----CCCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 34555655 3689999999999999999999999999974 6999999999999988876553
No 79
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.94 E-value=1.4e-06 Score=61.43 Aligned_cols=43 Identities=19% Similarity=0.265 Sum_probs=38.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----CHHHHHhhCCCCCHHHHHHHHH
Q 044161 61 HGYISTEEEQIIIQLHKKWGN----KWSRIARNLPGRTDNEIKNYWR 103 (229)
Q Consensus 61 ~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~l~gRt~~qiknrw~ 103 (229)
..+||.+|+.+|..+...|+. +|.+||..+||||..+|+.+|.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 468999999999999999974 7999999999999999999884
No 80
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.87 E-value=1e-05 Score=75.57 Aligned_cols=47 Identities=26% Similarity=0.438 Sum_probs=43.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccc
Q 044161 7 SKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYL 55 (229)
Q Consensus 7 kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L 55 (229)
...+||.||-+++++++.+|| .+|..||+.|+ +||..||+.+|.++.
T Consensus 379 ~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~Vg-TKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 379 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIG-NKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHS-SCCHHHHHHHHHHTT
T ss_pred cCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 457999999999999999999 79999999999 999999999987653
No 81
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.67 E-value=8.5e-05 Score=54.88 Aligned_cols=45 Identities=18% Similarity=0.150 Sum_probs=41.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHh
Q 044161 61 HGYISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTR 105 (229)
Q Consensus 61 ~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~ 105 (229)
...||+||..+..++...||.+|..||..||+||..+|...|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence 468999999999999999999999999999999999999988653
No 82
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.66 E-value=2.8e-05 Score=57.48 Aligned_cols=45 Identities=18% Similarity=0.269 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCccccccccccc
Q 044161 8 KGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNY 54 (229)
Q Consensus 8 kg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~ 54 (229)
...||+||.++..+....|| .+|..||..|| +||..+|...|...
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~-~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLE-RKTVAECVLYYYLT 87 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCT-TCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcC-CCCHHHHHHHHhcc
Confidence 46799999999999999999 88999999998 99999999987543
No 83
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.64 E-value=3.4e-05 Score=53.99 Aligned_cols=46 Identities=15% Similarity=0.180 Sum_probs=41.1
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhHHHH-hhCCCCCccccccccccc
Q 044161 7 SKGPWHEEEDELLVTFVTLFGERRWDYIAK-ASGLKRSGKSCGLRWLNY 54 (229)
Q Consensus 7 kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~-~l~~~Rt~~qcr~Rw~~~ 54 (229)
....||+||-++..+++.+|| .+|..|++ .|| +|+..+|...|...
T Consensus 7 ~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~-~Kt~~~~v~fYY~w 53 (70)
T 2crg_A 7 GMEEWSASEACLFEEALEKYG-KDFNDIRQDFLP-WKSLTSIIEYYYMW 53 (70)
T ss_dssp SSCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCS-SSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcC-CCCHHHHHHHHHhh
Confidence 346899999999999999999 78999999 598 99999999888643
No 84
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.63 E-value=0.00014 Score=50.82 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHh-hCCCCCHHHHHHHHHH
Q 044161 61 HGYISTEEEQIIIQLHKKWGNKWSRIAR-NLPGRTDNEIKNYWRT 104 (229)
Q Consensus 61 ~~~WT~eEd~~L~~~v~~~G~~W~~Ia~-~l~gRt~~qiknrw~~ 104 (229)
...||+||-.+..+++..||..|..|++ .+|+||..+|...|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 4689999999999999999999999999 5999999999999874
No 85
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.60 E-value=3.1e-05 Score=56.60 Aligned_cols=46 Identities=17% Similarity=0.396 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHhCC--CChhHHHHhhCCCCCccccccccccccc
Q 044161 10 PWHEEEDELLVTFVTLFGE--RRWDYIAKASGLKRSGKSCGLRWLNYLC 56 (229)
Q Consensus 10 ~WT~eEDe~L~~lv~~~g~--~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~ 56 (229)
-||.|||..|+...++.|. ..|..||+.|+ +|++.|+++|++..++
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~-Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLG-NKTPVEVSHRFRELMQ 82 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHS-SCCHHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHc-cCCHHHHHHHHHHHHH
Confidence 6999999999999999985 37999999998 9999999999987653
No 86
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.42 E-value=3.2e-05 Score=55.87 Aligned_cols=51 Identities=25% Similarity=0.520 Sum_probs=41.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC---------CChhHHHHhh---CCCCCccccccccccccc
Q 044161 6 LSKGPWHEEEDELLVTFVTLFGE---------RRWDYIAKAS---GLKRSGKSCGLRWLNYLC 56 (229)
Q Consensus 6 ~kkg~WT~eEDe~L~~lv~~~g~---------~~W~~IA~~l---~~~Rt~~qcr~Rw~~~L~ 56 (229)
.+...||.+|-..|+.+...+.. ..|..||..| |..||+.||+.+|.++..
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k 64 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLK 64 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999876421 1599999986 347999999999988754
No 87
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=96.34 E-value=4.3e-05 Score=52.91 Aligned_cols=45 Identities=13% Similarity=0.329 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHHhCCC--ChhHHHHhhCCCCCccccccccccccc
Q 044161 10 PWHEEEDELLVTFVTLFGER--RWDYIAKASGLKRSGKSCGLRWLNYLC 56 (229)
Q Consensus 10 ~WT~eEDe~L~~lv~~~g~~--~W~~IA~~l~~~Rt~~qcr~Rw~~~L~ 56 (229)
.||.|||..|+..+++-|.. -|..||+.| +|++.|+.+||+..++
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L--nks~~QV~~RF~~Lm~ 62 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL--DKNPNQVSERFQQLMK 62 (70)
Confidence 69999999999999999852 699999998 5999999999998765
No 88
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=97.19 E-value=0.0015 Score=59.27 Aligned_cols=100 Identities=18% Similarity=0.248 Sum_probs=78.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCccccccccccc----------------------------------
Q 044161 9 GPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNY---------------------------------- 54 (229)
Q Consensus 9 g~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~---------------------------------- 54 (229)
+.||.-+=..++.++.+||..+-..||..|+.++|...++. |.+.
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~ 202 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA 202 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999954788888762 2222
Q ss_pred --------------c----cCC-CCCCCCCHHHHHHHHHHHHHhC----CCHHHHHhh------------CCCCCHHHHH
Q 044161 55 --------------L----CPN-IKHGYISTEEEQIIIQLHKKWG----NKWSRIARN------------LPGRTDNEIK 99 (229)
Q Consensus 55 --------------L----~p~-~~~~~WT~eEd~~L~~~v~~~G----~~W~~Ia~~------------l~gRt~~qik 99 (229)
| .+. -+...||++||..|+-++.+|| +.|..|-.. |..||+..|.
T Consensus 203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~ 282 (374)
T 2y9y_A 203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA 282 (374)
T ss_dssp HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence 1 011 1345799999999999999998 459998433 3569999999
Q ss_pred HHHHHhhhHH
Q 044161 100 NYWRTRIRKK 109 (229)
Q Consensus 100 nrw~~~l~~~ 109 (229)
.|...|++-.
T Consensus 283 rRc~tLi~~I 292 (374)
T 2y9y_A 283 RRGNTLLQCL 292 (374)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988543
No 89
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.09 E-value=0.00054 Score=49.29 Aligned_cols=48 Identities=15% Similarity=0.413 Sum_probs=40.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC----------CHHHHHhhCC----CCCHHHHHHHHHHhhhH
Q 044161 61 HGYISTEEEQIIIQLHKKWGN----------KWSRIARNLP----GRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 61 ~~~WT~eEd~~L~~~v~~~G~----------~W~~Ia~~l~----gRt~~qiknrw~~~l~~ 108 (229)
...||.+|-.+||+++.+... .|..||..|. .||+.||+++|.++.+.
T Consensus 4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999976421 4999999973 69999999999987655
No 90
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.97 E-value=0.0013 Score=54.53 Aligned_cols=102 Identities=15% Similarity=0.105 Sum_probs=69.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhC--CCChhHHHHh--hCCCCCccccccccccc-------cc-----------------
Q 044161 5 KLSKGPWHEEEDELLVTFVTLFG--ERRWDYIAKA--SGLKRSGKSCGLRWLNY-------LC----------------- 56 (229)
Q Consensus 5 ~~kkg~WT~eEDe~L~~lv~~~g--~~~W~~IA~~--l~~~Rt~~qcr~Rw~~~-------L~----------------- 56 (229)
.-....||+.|=..|++++.+|| ...|..|+.. |. +++...++..+..+ +.
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~-~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~ 82 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELV-DKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVK 82 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCT-TSCHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccC-CCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccc
Confidence 34556899999999999999999 5789999865 44 66666554311111 00
Q ss_pred -----------------------------------------------CCCCCCCCCHHHHHHHHHHHHHhC-CCHHHHHh
Q 044161 57 -----------------------------------------------PNIKHGYISTEEEQIIIQLHKKWG-NKWSRIAR 88 (229)
Q Consensus 57 -----------------------------------------------p~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~ 88 (229)
+.--...||++||..|+..+.+|| .+|..|-.
T Consensus 83 ~~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~ 162 (211)
T 4b4c_A 83 GPTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKM 162 (211)
T ss_dssp CCEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred chhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHh
Confidence 000123599999999999999999 89999955
Q ss_pred h--C------------CCCCHHHHHHHHHHhhh
Q 044161 89 N--L------------PGRTDNEIKNYWRTRIR 107 (229)
Q Consensus 89 ~--l------------~gRt~~qiknrw~~~l~ 107 (229)
. | ..+++..+..|-..+++
T Consensus 163 D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 163 DPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp CSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred ChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 2 1 12456678888776664
No 91
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.49 E-value=0.002 Score=47.32 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=43.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhC----CCCCccccccccccccc
Q 044161 6 LSKGPWHEEEDELLVTFVTLFGERRWDYIAKASG----LKRSGKSCGLRWLNYLC 56 (229)
Q Consensus 6 ~kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~----~~Rt~~qcr~Rw~~~L~ 56 (229)
++...||.||...|..|+.+|+ -.|-.|+.... ..||..++++||..+..
T Consensus 28 L~~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~ 81 (93)
T 4iej_A 28 LHDDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHICA 81 (93)
T ss_dssp TCBTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHHHH
Confidence 4457899999999999999999 88999999873 26999999999987643
No 92
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.14 E-value=0.067 Score=36.53 Aligned_cols=51 Identities=16% Similarity=0.214 Sum_probs=40.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCC--hhHHHHhhCC-CCCccccccccccc
Q 044161 4 EKLSKGPWHEEEDELLVTFVTLFGERR--WDYIAKASGL-KRSGKSCGLRWLNY 54 (229)
Q Consensus 4 ~~~kkg~WT~eEDe~L~~lv~~~g~~~--W~~IA~~l~~-~Rt~~qcr~Rw~~~ 54 (229)
++..+-.||+|..+..+.+|+.+|..+ +..|.+.|+. |.|..+++-|.+.|
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 456778999999999999999999332 7899998863 57888887766554
No 93
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=93.85 E-value=0.067 Score=44.07 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=26.9
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhHHHHh
Q 044161 8 KGPWHEEEDELLVTFVTLFGERRWDYIAKA 37 (229)
Q Consensus 8 kg~WT~eEDe~L~~lv~~~g~~~W~~IA~~ 37 (229)
...||.+||..|+..|.+||.++|..|-.-
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D 163 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMD 163 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence 346999999999999999999999999764
No 94
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=92.91 E-value=0.074 Score=46.19 Aligned_cols=28 Identities=36% Similarity=0.603 Sum_probs=25.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhHHHHh
Q 044161 10 PWHEEEDELLVTFVTLFGERRWDYIAKA 37 (229)
Q Consensus 10 ~WT~eEDe~L~~lv~~~g~~~W~~IA~~ 37 (229)
.|+.+||..|+..|-+||.++|..|-.-
T Consensus 170 ~W~~~dD~~LLvGIykyGyG~We~Ir~D 197 (270)
T 2xb0_X 170 NWTKEEDEKLLIGVFKYGYGSWTQIRDD 197 (270)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred CcChHHHHHHHHHHHHHcCCcHHHHhcC
Confidence 4999999999999999999999999653
No 95
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=91.96 E-value=0.59 Score=31.75 Aligned_cols=47 Identities=9% Similarity=-0.002 Sum_probs=39.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCC---HHHHHhhC--CCCCHHHHHHHHHHh
Q 044161 59 IKHGYISTEEEQIIIQLHKKWGNK---WSRIARNL--PGRTDNEIKNYWRTR 105 (229)
Q Consensus 59 ~~~~~WT~eEd~~L~~~v~~~G~~---W~~Ia~~l--~gRt~~qiknrw~~~ 105 (229)
..+-.||+|.-+..++++.++|.. +..|.+.| +|.|..+|+.|...+
T Consensus 5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY 56 (64)
T 1irz_A 5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF 56 (64)
T ss_dssp CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 345689999999999999999954 78998876 689999999887553
No 96
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=90.40 E-value=0.51 Score=41.55 Aligned_cols=46 Identities=20% Similarity=0.328 Sum_probs=40.7
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CHHHHHhhCCCCCHHHHHHHHHHhhh
Q 044161 62 GYISTEEEQIIIQLHKKWGN-KWSRIARNLPGRTDNEIKNYWRTRIR 107 (229)
Q Consensus 62 ~~WT~eEd~~L~~~v~~~G~-~W~~Ia~~l~gRt~~qiknrw~~~l~ 107 (229)
+.||..+....+.++..||. .|..||..++|+|...|+..+.....
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 47999999999999999995 79999999999999999877665543
No 97
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=81.55 E-value=0.88 Score=34.63 Aligned_cols=57 Identities=14% Similarity=0.295 Sum_probs=40.1
Q ss_pred HHHHHHHHhCC-------CChhHHHHhhCCCCCc----ccccccccccccCCCCCCCCCHHHHHHHHHHHH
Q 044161 18 LLVTFVTLFGE-------RRWDYIAKASGLKRSG----KSCGLRWLNYLCPNIKHGYISTEEEQIIIQLHK 77 (229)
Q Consensus 18 ~L~~lv~~~g~-------~~W~~IA~~l~~~Rt~----~qcr~Rw~~~L~p~~~~~~WT~eEd~~L~~~v~ 77 (229)
+|..+|.+.|. +.|..||..|+...+. ...+.+|.++|.|- ...+++|-..|.+-|.
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y---E~~~~~e~~~l~~~v~ 113 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY---DSLSPEEHRRLEKEVL 113 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH---HHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH---HCcCHHHHhhHHHHHH
Confidence 34455555552 3699999999754433 46788999999873 3478888888877664
No 98
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=76.94 E-value=1.2 Score=33.43 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=30.1
Q ss_pred HHHHHHHHhCC-------CChhHHHHhhCCCCCcccccccccccccC
Q 044161 18 LLVTFVTLFGE-------RRWDYIAKASGLKRSGKSCGLRWLNYLCP 57 (229)
Q Consensus 18 ~L~~lv~~~g~-------~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p 57 (229)
+|..+|.+.|. +.|..||..|+... +..++..|.++|-|
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 98 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 98 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCC-TTHHHHHHHHHHSH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence 46677777762 37999999998444 78889999888875
No 99
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=75.55 E-value=2.8 Score=37.83 Aligned_cols=32 Identities=19% Similarity=0.439 Sum_probs=28.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CChhHHHHhh
Q 044161 7 SKGPWHEEEDELLVTFVTLFGE---RRWDYIAKAS 38 (229)
Q Consensus 7 kkg~WT~eEDe~L~~lv~~~g~---~~W~~IA~~l 38 (229)
++..||.+||..|+-++.+||. ++|..|-..+
T Consensus 227 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~I 261 (374)
T 2y9y_A 227 NKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEI 261 (374)
T ss_dssp SCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4557999999999999999999 8999997765
No 100
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=74.83 E-value=1.8 Score=30.96 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCC-------CCCCCCCHHHHHHHH
Q 044161 16 DELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPN-------IKHGYISTEEEQIII 73 (229)
Q Consensus 16 De~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~-------~~~~~WT~eEd~~L~ 73 (229)
+.+|.+||+.|| |...+..+. ..|.. .+|. +.+.+|..+..+.|.
T Consensus 18 E~ilt~Lv~~YG---W~~L~~~i~-----I~CF~-----~~PSikSSLKFLRKTpWAR~KVE~lY 69 (88)
T 2jvw_A 18 QKLLTELVEHYG---WEELSYMVN-----INCFK-----KDPSIKSSLKFLRKTDWARERVENIY 69 (88)
T ss_dssp HHHHHHHHHHTC---HHHHHHHTT-----SSSTT-----SSCCHHHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC---HHHHHhhcc-----cccCC-----CCCchHHHHHHHhcCHhHHHHHHHHH
Confidence 578999999999 999999887 34442 2444 346789888777654
No 101
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=71.98 E-value=2 Score=31.50 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=28.9
Q ss_pred HHHHHHHHhCC-------CChhHHHHhhCCCCC----cccccccccccccC
Q 044161 18 LLVTFVTLFGE-------RRWDYIAKASGLKRS----GKSCGLRWLNYLCP 57 (229)
Q Consensus 18 ~L~~lv~~~g~-------~~W~~IA~~l~~~Rt----~~qcr~Rw~~~L~p 57 (229)
+|..+|.+.|. +.|..||..|+...+ +.+++..|.++|-|
T Consensus 37 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~L~~ 87 (107)
T 1ig6_A 37 TMFQAAQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERLILP 87 (107)
T ss_dssp HHHHHHHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHHTTT
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46667777752 369999999985432 35778888888876
No 102
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=71.18 E-value=3.3 Score=32.23 Aligned_cols=60 Identities=28% Similarity=0.416 Sum_probs=39.6
Q ss_pred HHHHHHHHhCC-------CChhHHHHhhCCCCC----cccccccccccccC--CCCCCCCCHHHHHHHHHHHH
Q 044161 18 LLVTFVTLFGE-------RRWDYIAKASGLKRS----GKSCGLRWLNYLCP--NIKHGYISTEEEQIIIQLHK 77 (229)
Q Consensus 18 ~L~~lv~~~g~-------~~W~~IA~~l~~~Rt----~~qcr~Rw~~~L~p--~~~~~~WT~eEd~~L~~~v~ 77 (229)
+|..+|.+.|. +.|..||..|+...+ +.+++..|.++|-| ...+|.-.++|-+.-++.-+
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~~~~g~~~p~~~~~~~~~~~ 140 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYECEKRGLSNPNELQAAIDSNR 140 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhc
Confidence 46677777762 269999999985432 45688889999887 33455555666555444433
No 103
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=71.12 E-value=1.8 Score=32.51 Aligned_cols=40 Identities=23% Similarity=0.335 Sum_probs=28.5
Q ss_pred HHHHHHHHhCC-------CChhHHHHhhCCCCC---cccccccccccccC
Q 044161 18 LLVTFVTLFGE-------RRWDYIAKASGLKRS---GKSCGLRWLNYLCP 57 (229)
Q Consensus 18 ~L~~lv~~~g~-------~~W~~IA~~l~~~Rt---~~qcr~Rw~~~L~p 57 (229)
+|..+|.+.|. +.|..||..|+...+ +.+.+..|.++|-|
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~ 93 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYP 93 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 57777888772 369999999985432 45677778777764
No 104
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=69.21 E-value=2 Score=32.71 Aligned_cols=40 Identities=28% Similarity=0.430 Sum_probs=29.3
Q ss_pred HHHHHHHHhCC-------CChhHHHHhhCCCCC----cccccccccccccC
Q 044161 18 LLVTFVTLFGE-------RRWDYIAKASGLKRS----GKSCGLRWLNYLCP 57 (229)
Q Consensus 18 ~L~~lv~~~g~-------~~W~~IA~~l~~~Rt----~~qcr~Rw~~~L~p 57 (229)
+|..+|.+.|. +.|..||..|+...+ ..+++..|.++|-|
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~ 106 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYP 106 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777773 369999999985443 35678888888876
No 105
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=68.54 E-value=16 Score=31.45 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=42.3
Q ss_pred CCCCCHHHHHHHHHHHHHhC---CCHHHHHhh--CCCCCHHHHHHHHHHhhhHH
Q 044161 61 HGYISTEEEQIIIQLHKKWG---NKWSRIARN--LPGRTDNEIKNYWRTRIRKK 109 (229)
Q Consensus 61 ~~~WT~eEd~~L~~~v~~~G---~~W~~Ia~~--l~gRt~~qiknrw~~~l~~~ 109 (229)
+++||+-|-..|+..+..|| .+|..|+.. |+.++...++.-+..++..-
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~li~~c 56 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEMMEAA 56 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHH
Confidence 57899999999999999999 589999766 68899999999888777543
No 106
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=67.04 E-value=2.4 Score=32.13 Aligned_cols=40 Identities=23% Similarity=0.405 Sum_probs=28.0
Q ss_pred HHHHHHHHhCC-------CChhHHHHhhCCCCC---cccccccccccccC
Q 044161 18 LLVTFVTLFGE-------RRWDYIAKASGLKRS---GKSCGLRWLNYLCP 57 (229)
Q Consensus 18 ~L~~lv~~~g~-------~~W~~IA~~l~~~Rt---~~qcr~Rw~~~L~p 57 (229)
+|..+|.++|. +.|..||..|+...+ +.+++..|.++|-|
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~ 104 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFA 104 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHH
Confidence 46677777762 269999999985542 34677778777754
No 107
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=65.86 E-value=2.5 Score=30.27 Aligned_cols=40 Identities=20% Similarity=0.358 Sum_probs=27.1
Q ss_pred HHHHHHHHhCC-------CChhHHHHhhCCCCC---cccccccccccccC
Q 044161 18 LLVTFVTLFGE-------RRWDYIAKASGLKRS---GKSCGLRWLNYLCP 57 (229)
Q Consensus 18 ~L~~lv~~~g~-------~~W~~IA~~l~~~Rt---~~qcr~Rw~~~L~p 57 (229)
+|..+|.+.|. +.|..||..|+...+ +.+++..|.++|-|
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~L~~ 89 (96)
T 2jxj_A 40 ALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERILYP 89 (96)
T ss_dssp HHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHHHHH
Confidence 45666666652 369999999985432 34677778877754
No 108
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=65.50 E-value=2.4 Score=31.04 Aligned_cols=40 Identities=25% Similarity=0.365 Sum_probs=27.7
Q ss_pred HHHHHHHHhCC-------CChhHHHHhhCCCCC---cccccccccccccC
Q 044161 18 LLVTFVTLFGE-------RRWDYIAKASGLKRS---GKSCGLRWLNYLCP 57 (229)
Q Consensus 18 ~L~~lv~~~g~-------~~W~~IA~~l~~~Rt---~~qcr~Rw~~~L~p 57 (229)
+|..+|.+.|. +.|..||..|+...+ +.+.+..|.++|-|
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46667777762 269999999984432 35677777777654
No 109
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=63.68 E-value=3.1 Score=31.41 Aligned_cols=40 Identities=28% Similarity=0.406 Sum_probs=27.0
Q ss_pred HHHHHHHHhCC-------CChhHHHHhhCCCCC---cccccccccccccC
Q 044161 18 LLVTFVTLFGE-------RRWDYIAKASGLKRS---GKSCGLRWLNYLCP 57 (229)
Q Consensus 18 ~L~~lv~~~g~-------~~W~~IA~~l~~~Rt---~~qcr~Rw~~~L~p 57 (229)
+|..+|.+.|. +.|..||..|+...+ +.+++..|.++|-|
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~ 95 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNP 95 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHH
Confidence 46677777762 379999999985432 24566677776654
No 110
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=58.49 E-value=1.9 Score=32.82 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=27.4
Q ss_pred HHHHHHHHhCC-------CChhHHHHhhCCCCCcccccccccccccC
Q 044161 18 LLVTFVTLFGE-------RRWDYIAKASGLKRSGKSCGLRWLNYLCP 57 (229)
Q Consensus 18 ~L~~lv~~~g~-------~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p 57 (229)
+|..+|.+.|. +.|..||..|+... +..++..|.++|-|
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-YQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCCh-HHHHHHHHHHHHHH
Confidence 35556666652 26999999998444 77788888887765
No 111
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=58.20 E-value=7.7 Score=25.25 Aligned_cols=29 Identities=14% Similarity=0.094 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHhhCCCCC
Q 044161 14 EEDELLVTFVTLFGERRWDYIAKASGLKRS 43 (229)
Q Consensus 14 eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt 43 (229)
-|.+.|..++..++ ++....|+.||..|+
T Consensus 19 ~E~~~i~~aL~~~~-gn~~~aA~~LGisr~ 47 (63)
T 3e7l_A 19 FEKIFIEEKLREYD-YDLKRTAEEIGIDLS 47 (63)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHCcCHH
Confidence 47788889999999 889999999986554
No 112
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=58.16 E-value=9.4 Score=28.33 Aligned_cols=39 Identities=18% Similarity=0.348 Sum_probs=29.9
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCCCCCHHHHHHHHHHhhhHH
Q 044161 71 IIIQLHKKWG--------NKWSRIARNLPGRTDNEIKNYWRTRIRKK 109 (229)
Q Consensus 71 ~L~~~v~~~G--------~~W~~Ia~~l~gRt~~qiknrw~~~l~~~ 109 (229)
.|..+|...| +.|.+||..|.--.+..++..|..+|-+-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L~~y 99 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPY 99 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 3666777766 47999999985444789999999888654
No 113
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=57.30 E-value=17 Score=23.15 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 67 EEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 67 eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
+.+..++.++...|-.+.+||..+ |-+...|+.+....+++
T Consensus 18 ~~~r~il~l~~~~g~s~~eIA~~l-gis~~tv~~~~~ra~~~ 58 (70)
T 2o8x_A 18 TDQREALLLTQLLGLSYADAAAVC-GCPVGTIRSRVARARDA 58 (70)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 445556666667889999999999 67888998887765544
No 114
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=55.95 E-value=23 Score=25.56 Aligned_cols=39 Identities=13% Similarity=0.332 Sum_probs=27.6
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCCCCC----HHHHHHHHHHhhhHH
Q 044161 71 IIIQLHKKWG--------NKWSRIARNLPGRT----DNEIKNYWRTRIRKK 109 (229)
Q Consensus 71 ~L~~~v~~~G--------~~W~~Ia~~l~gRt----~~qiknrw~~~l~~~ 109 (229)
.|..+|...| +.|.+||..|.--. +.++|..|..+|-+-
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~L~~y 98 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERILHPF 98 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHH
Confidence 4566666666 47999999994322 467888888877654
No 115
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=55.69 E-value=20 Score=26.50 Aligned_cols=42 Identities=12% Similarity=0.231 Sum_probs=30.4
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCCCCC----HHHHHHHHHHhhhHHHHH
Q 044161 71 IIIQLHKKWG--------NKWSRIARNLPGRT----DNEIKNYWRTRIRKKIQA 112 (229)
Q Consensus 71 ~L~~~v~~~G--------~~W~~Ia~~l~gRt----~~qiknrw~~~l~~~~~~ 112 (229)
.|..+|...| +.|.+||..|.--. +..+|..|..+|-+--.-
T Consensus 44 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~L~~yE~~ 97 (117)
T 2jrz_A 44 SLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERIVYPYEMY 97 (117)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHTTHHHHHH
T ss_pred HHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4666777776 47999999984322 567899999988775443
No 116
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=53.88 E-value=21 Score=23.39 Aligned_cols=44 Identities=18% Similarity=0.345 Sum_probs=31.0
Q ss_pred CCHHHHHHHHHHHHH----hCCCHHHHHhhCCCCCHHHHHHHHHHhhhHH
Q 044161 64 ISTEEEQIIIQLHKK----WGNKWSRIARNLPGRTDNEIKNYWRTRIRKK 109 (229)
Q Consensus 64 WT~eEd~~L~~~v~~----~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~~ 109 (229)
.++. +..++.+.-. .|-.+.+||..+ |-|...|+.+....+++-
T Consensus 11 L~~~-er~il~l~~~l~~~~~~s~~eIA~~l-~is~~tV~~~~~ra~~kL 58 (73)
T 1ku3_A 11 LSER-EAMVLKMRKGLIDGREHTLEEVGAYF-GVTRERIRQIENKALRKL 58 (73)
T ss_dssp SCHH-HHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHHH
T ss_pred CCHH-HHHHHHHHHhcccCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence 3444 4445555554 578899999999 689999988877665543
No 117
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=49.67 E-value=29 Score=25.85 Aligned_cols=41 Identities=17% Similarity=0.272 Sum_probs=28.7
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCCCCC----HHHHHHHHHHhhhHHHH
Q 044161 71 IIIQLHKKWG--------NKWSRIARNLPGRT----DNEIKNYWRTRIRKKIQ 111 (229)
Q Consensus 71 ~L~~~v~~~G--------~~W~~Ia~~l~gRt----~~qiknrw~~~l~~~~~ 111 (229)
.|..+|...| +.|.+|+..|.--+ +..+|..|..+|-+--.
T Consensus 46 ~Ly~~V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~L~~yE~ 98 (122)
T 2eqy_A 46 QLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERILNPYNL 98 (122)
T ss_dssp HHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHHhHHHHH
Confidence 3666666666 47999999984322 35788889888766543
No 118
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=49.13 E-value=30 Score=25.80 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=29.1
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCCCCC----HHHHHHHHHHhhhHHHH
Q 044161 71 IIIQLHKKWG--------NKWSRIARNLPGRT----DNEIKNYWRTRIRKKIQ 111 (229)
Q Consensus 71 ~L~~~v~~~G--------~~W~~Ia~~l~gRt----~~qiknrw~~~l~~~~~ 111 (229)
.|..+|...| +.|.+||..|.--+ +..+|..|..+|-+--.
T Consensus 55 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~L~~yE~ 107 (125)
T 2cxy_A 55 RLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQYLFAFEC 107 (125)
T ss_dssp HHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4666666666 47999999984322 45788989888866544
No 119
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=48.67 E-value=21 Score=23.02 Aligned_cols=40 Identities=13% Similarity=0.234 Sum_probs=29.2
Q ss_pred HHHHHHHHHH----HhCCCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 68 EEQIIIQLHK----KWGNKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 68 Ed~~L~~~v~----~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
.+..++.+.- ..|..+.+||..+ |-|...|+.+....+++
T Consensus 9 ~er~il~l~~~l~~~~g~s~~eIA~~l-gis~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 9 REAKVLRMRFGIDMNTDYTLEEVGKQF-DVTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHHHHHHHTTTTSSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3444444544 3578899999999 68999999988776544
No 120
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=44.91 E-value=14 Score=27.83 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=28.8
Q ss_pred HHHHHHHhC--------CCHHHHHhhCCCCCHHHHHHHHHHhhhHHH
Q 044161 72 IIQLHKKWG--------NKWSRIARNLPGRTDNEIKNYWRTRIRKKI 110 (229)
Q Consensus 72 L~~~v~~~G--------~~W~~Ia~~l~gRt~~qiknrw~~~l~~~~ 110 (229)
|..+|...| +.|.+||..|.--.+..++..|..+|-+--
T Consensus 53 Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~Lr~~Y~k~L~~yE 99 (123)
T 1kkx_A 53 LYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRILLPYE 99 (123)
T ss_dssp HHHHHTTTSCHHHHTTSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHhccccccHHHHHHHHCCChHHHHHHHHHHHHHHHH
Confidence 555555555 359999999854448899999998886653
No 121
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=43.31 E-value=35 Score=23.37 Aligned_cols=41 Identities=24% Similarity=0.301 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhhhHH
Q 044161 68 EEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRKK 109 (229)
Q Consensus 68 Ed~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~~ 109 (229)
.+..++.++...|-.-.+||..+ |-+...|+.+....+++-
T Consensus 41 ~~r~vl~l~~~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~L 81 (92)
T 3hug_A 41 EHRAVIQRSYYRGWSTAQIATDL-GIAEGTVKSRLHYAVRAL 81 (92)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHH-TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHHH
Confidence 44455566666788899999999 688999998887655443
No 122
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=41.77 E-value=17 Score=25.40 Aligned_cols=29 Identities=21% Similarity=0.068 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHhhCCCCC
Q 044161 14 EEDELLVTFVTLFGERRWDYIAKASGLKRS 43 (229)
Q Consensus 14 eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt 43 (229)
-|.+.|.+++.+++ ++....|+.||..|+
T Consensus 51 ~E~~~i~~aL~~~~-gn~~~aA~~LGIsr~ 79 (91)
T 1ntc_A 51 LERTLLTTALRHTQ-GHKQEAARLLGWGAA 79 (91)
T ss_dssp HHHHHHHHHHHHTT-TCTTHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHHCcCHH
Confidence 36778888899998 889999999986654
No 123
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=41.04 E-value=20 Score=24.92 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhCCCChhHHHHhhCCCCC
Q 044161 13 EEEDELLVTFVTLFGERRWDYIAKASGLKRS 43 (229)
Q Consensus 13 ~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt 43 (229)
.-|.+.|.+++.+++ ++..+.|+.||..|+
T Consensus 40 ~~Er~~I~~aL~~~~-GN~s~AA~~LGISR~ 69 (81)
T 1umq_A 40 RVRWEHIQRIYEMCD-RNVSETARRLNMHRR 69 (81)
T ss_dssp HHHHHHHHHHHHHTT-SCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHhC-CCHHHHHHHhCCCHH
Confidence 446777889999998 889999999986654
No 124
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=40.22 E-value=24 Score=24.17 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCccccc
Q 044161 11 WHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCG 48 (229)
Q Consensus 11 WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr 48 (229)
.|+.-++++..+....|+..=-.||+.+| -|+.+++-
T Consensus 7 ls~~~ee~I~~fL~~~Gp~~AL~IAK~LG-lktAK~VN 43 (72)
T 3eyi_A 7 FSQQREEDIYRFLKDNGPQRALVIAQALG-MRTAKDVN 43 (72)
T ss_dssp CSSHHHHHHHHHHHHHCSEEHHHHHHHTT-CCSGGGTH
T ss_pred hhhhhHHHHHHHHHHcCCchHHHHHHHhC-cchhhhcC
Confidence 45555777888888999899999999999 88998874
No 125
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=39.69 E-value=53 Score=24.49 Aligned_cols=41 Identities=12% Similarity=0.187 Sum_probs=29.9
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCC--CC---CHHHHHHHHHHhhhHHHH
Q 044161 71 IIIQLHKKWG--------NKWSRIARNLP--GR---TDNEIKNYWRTRIRKKIQ 111 (229)
Q Consensus 71 ~L~~~v~~~G--------~~W~~Ia~~l~--gR---t~~qiknrw~~~l~~~~~ 111 (229)
.|..+|...| +.|.+||..|. .. .+..+|..|..+|-+--.
T Consensus 56 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~L~~yE~ 109 (128)
T 1c20_A 56 ELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYEC 109 (128)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4667777776 47999999983 22 257889999988876543
No 126
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=39.15 E-value=44 Score=24.99 Aligned_cols=39 Identities=18% Similarity=0.386 Sum_probs=28.0
Q ss_pred HHHHHHHHhC--------CCHHHHHhhC--CCC---CHHHHHHHHHHhhhHH
Q 044161 71 IIIQLHKKWG--------NKWSRIARNL--PGR---TDNEIKNYWRTRIRKK 109 (229)
Q Consensus 71 ~L~~~v~~~G--------~~W~~Ia~~l--~gR---t~~qiknrw~~~l~~~ 109 (229)
.|..+|.+.| +.|.+||..| |.- ....++..|..+|-+-
T Consensus 46 ~Ly~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~L~~Y 97 (121)
T 2rq5_A 46 CFFRLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQYLLSY 97 (121)
T ss_dssp HHHHHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHhHHH
Confidence 3666777776 5799999998 321 2467899998887553
No 127
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=38.48 E-value=50 Score=25.33 Aligned_cols=41 Identities=12% Similarity=0.198 Sum_probs=29.4
Q ss_pred HHHHHHHHhC--------CCHHHHHhhCCC--C---CHHHHHHHHHHhhhHHHH
Q 044161 71 IIIQLHKKWG--------NKWSRIARNLPG--R---TDNEIKNYWRTRIRKKIQ 111 (229)
Q Consensus 71 ~L~~~v~~~G--------~~W~~Ia~~l~g--R---t~~qiknrw~~~l~~~~~ 111 (229)
.|..+|...| +.|.+||..|.- . .+..+|..|..+|-+--.
T Consensus 68 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~L~~yE~ 121 (145)
T 2kk0_A 68 MLYVLVTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKYLYPYEC 121 (145)
T ss_dssp HHHHHHHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHHSSHHHH
T ss_pred HHHHHHHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHHHHHHHH
Confidence 4666677766 479999999832 2 256889999988866543
No 128
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=37.17 E-value=22 Score=27.59 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=27.5
Q ss_pred hHHHHhhCCCCCcccccccccccccCCCCCCCCCHHHHHHHHHH
Q 044161 32 DYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTEEEQIIIQL 75 (229)
Q Consensus 32 ~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~~~WT~eEd~~L~~~ 75 (229)
..||..+. |+|+.+||..+. +. ..+|+||++.+.+-
T Consensus 119 ~~vA~~ik-gkt~eeir~~f~------I~-nd~t~eEe~~ir~e 154 (160)
T 2p1m_A 119 QTVADMIK-GKTPEEIRTTFN------IK-NDFTPEEEEEVRRE 154 (160)
T ss_dssp HHHHHTTT-TCCHHHHHHHTT------CC-CCCCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------CC-CCCCHHHHHHHHHh
Confidence 57888887 999999998652 32 36999999876543
No 129
>3cz6_A DNA-binding protein RAP1; helical bundle, activator, chromosomal protein, nucleus, phosphoprotein, repressor, telomere; HET: MES; 1.85A {Saccharomyces cerevisiae} PDB: 3owt_A
Probab=36.68 E-value=20 Score=28.60 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=14.9
Q ss_pred CCCCCCCCCHHHHHHHH
Q 044161 4 EKLSKGPWHEEEDELLV 20 (229)
Q Consensus 4 ~~~kkg~WT~eEDe~L~ 20 (229)
|...+|-||+|+|+.|.
T Consensus 110 P~N~pGIWT~eDDe~L~ 126 (168)
T 3cz6_A 110 PPNVPGIWTHDDDESLK 126 (168)
T ss_dssp CTTCTTCCCHHHHHHHH
T ss_pred CCCCCCCCChhhHHHHH
Confidence 45678999999999998
No 130
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=35.64 E-value=17 Score=27.99 Aligned_cols=43 Identities=16% Similarity=0.052 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCC
Q 044161 14 EEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPN 58 (229)
Q Consensus 14 eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~ 58 (229)
+-|.+|+.++++.|.-.+..||+.++ -+...|+.|........
T Consensus 3 ~~d~~il~~L~~~~~~s~~~la~~lg--~s~~tv~~rl~~L~~~g 45 (162)
T 3i4p_A 3 RLDRKILRILQEDSTLAVADLAKKVG--LSTTPCWRRIQKMEEDG 45 (162)
T ss_dssp HHHHHHHHHHTTCSCSCHHHHHHHHT--CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 45788889998888889999999997 67788888877765443
No 131
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=34.57 E-value=92 Score=20.06 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 64 ISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 64 WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
.|+.|-+.| .++ ..|-.-.+||..+ |-+...|+.+....+++
T Consensus 17 L~~~e~~vl-~l~-~~g~s~~eIA~~l-~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 17 LSERERQVL-SAV-VAGLPNKSIAYDL-DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HCHHHHHHH-HHH-TTTCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HHH-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 455555444 444 6788899999999 67888998887766544
No 132
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=33.67 E-value=63 Score=21.84 Aligned_cols=40 Identities=13% Similarity=0.234 Sum_probs=28.7
Q ss_pred HHHHHHHHHHH----hCCCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 68 EEQIIIQLHKK----WGNKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 68 Ed~~L~~~v~~----~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
.+..++.+.-. .|-.+.+||..+ |-|...|+.+....+++
T Consensus 22 ~er~vl~l~~~l~~~~~~s~~EIA~~l-gis~~tV~~~~~ra~~k 65 (87)
T 1tty_A 22 REAMVLRMRYGLLDGKPKTLEEVGQYF-NVTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHHHHHTTTTSSCCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 34445555544 578899999999 68888898877665544
No 133
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=33.59 E-value=79 Score=21.82 Aligned_cols=43 Identities=19% Similarity=0.196 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 63 YISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 63 ~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
..|+.|-+.|.- + ..|-.-.+||..+ |-+...|+.+...++++
T Consensus 27 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 27 GLTDQERTLLGL-L-SEGLTNKQIADRM-FLAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCCHHHHHHHHH-H-HTTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 466666665544 5 7788899999999 67999999887766544
No 134
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=32.69 E-value=32 Score=24.68 Aligned_cols=29 Identities=21% Similarity=0.108 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHhhCCCCC
Q 044161 14 EEDELLVTFVTLFGERRWDYIAKASGLKRS 43 (229)
Q Consensus 14 eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt 43 (229)
-|...|..++.+++ ++-...|+.||..|+
T Consensus 58 ~Er~~I~~aL~~~~-gn~~~AA~~LGIsR~ 86 (98)
T 1eto_A 58 VEQPLLDMVMQYTL-GNQTRAALMMGINRG 86 (98)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHhC-CCHHHHHHHhCCCHH
Confidence 46778888889988 889999999986654
No 135
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=31.90 E-value=97 Score=23.37 Aligned_cols=30 Identities=10% Similarity=-0.008 Sum_probs=23.6
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 78 KWGNKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 78 ~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
..|-...+||..+ |-+...|+.+....+++
T Consensus 154 ~~g~s~~EIA~~l-gis~~tV~~~l~ra~~~ 183 (194)
T 1or7_A 154 LDGLSYEEIAAIM-DCPVGTVRSRIFRAREA 183 (194)
T ss_dssp TTCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3467799999999 68889999888765544
No 136
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=31.20 E-value=1.1e+02 Score=21.07 Aligned_cols=45 Identities=18% Similarity=0.174 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 61 HGYISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 61 ~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
....|+.|-+.|.-++ .|..-.+||..| |-+...|+.+...++++
T Consensus 27 ~~~Lt~rE~~Vl~l~~--~G~s~~eIA~~L-~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 27 QDVLTPRECLILQEVE--KGFTNQEIADAL-HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp --CCCHHHHHHHHHHH--TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHH--cCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3467777777665544 788899999999 68999999988877655
No 137
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=31.00 E-value=26 Score=27.53 Aligned_cols=35 Identities=23% Similarity=0.166 Sum_probs=27.3
Q ss_pred hhHHHHhhCCCCCcccccccccccccCCCCCCCCCHHHHHHHH
Q 044161 31 WDYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTEEEQIII 73 (229)
Q Consensus 31 W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~~~WT~eEd~~L~ 73 (229)
=..||..+. |+|+.++|..+. +. ..+|+||++.+.
T Consensus 126 c~~vA~~ik-gktpeeiR~~f~------I~-nd~t~eEe~~ir 160 (169)
T 3v7d_A 126 CKVVAEMIR-GRSPEEIRRTFN------IV-NDFTPEEEAAIR 160 (169)
T ss_dssp HHHHHHHHT-TCCHHHHHHHHT------CC-CCCCHHHHHHHH
T ss_pred HHHHHHHHc-CCCHHHHHHHcC------CC-CCCCHHHHHHHH
Confidence 467888897 999999998662 22 359999998764
No 138
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=30.18 E-value=87 Score=20.92 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 63 YISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 63 ~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
..|+.|-+.|.- + ..|-.-.+||..+ |-+...|+.+...++++
T Consensus 21 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I-AQGLPNKMIARRL-DITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 467766665544 4 6788899999999 68999999887766544
No 139
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=29.92 E-value=1.5e+02 Score=21.06 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccC------CCCCCCCCHHHHHHHHHHHHHhCC
Q 044161 8 KGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCP------NIKHGYISTEEEQIIIQLHKKWGN 81 (229)
Q Consensus 8 kg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p------~~~~~~WT~eEd~~L~~~v~~~G~ 81 (229)
+...|.++-..++.++. -| ..-..||+.++ .+...++ ||...... .-.....+++++..|+.+...-+-
T Consensus 4 ~~~~s~~~r~~i~~~~~-~G-~s~~~ia~~lg--is~~Tv~-r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~~~~~~~ 78 (141)
T 1u78_A 4 GSALSDTERAQLDVMKL-LN-VSLHEMSRKIS--RSRHCIR-VYLKDPVSYGTSKRAPRRKALSVRDERNVIRAASNSCK 78 (141)
T ss_dssp SCCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHH-HHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHHHHHCCC
T ss_pred cccCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHcccccCCcCCCCCCCcCCHHHHHHHHHHHhCCCC
Confidence 35689999888888874 46 56899999997 4444443 33322111 111234788888878777333333
Q ss_pred CHHHHHhhCCC-CCHHHHHHH
Q 044161 82 KWSRIARNLPG-RTDNEIKNY 101 (229)
Q Consensus 82 ~W~~Ia~~l~g-Rt~~qiknr 101 (229)
.=.+|+..|.- -+...|...
T Consensus 79 s~~~i~~~lg~~~s~~tV~r~ 99 (141)
T 1u78_A 79 TARDIRNELQLSASKRTILNV 99 (141)
T ss_dssp CHHHHHHHTTCCSCHHHHHHH
T ss_pred CHHHHHHHHCCCccHHHHHHH
Confidence 45788888832 455555543
No 140
>2yqf_A Ankyrin-1; death domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yvi_A
Probab=29.49 E-value=95 Score=22.33 Aligned_cols=34 Identities=21% Similarity=0.437 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHH
Q 044161 65 STEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIK 99 (229)
Q Consensus 65 T~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qik 99 (229)
++.-+..|..+....|..|..+|+.| |=+..+|.
T Consensus 14 ~~~~~~~~~~ia~~lg~~Wk~LAr~L-g~s~~~I~ 47 (111)
T 2yqf_A 14 TEQAEMKMAVISEHLGLSWAELAREL-QFSVEDIN 47 (111)
T ss_dssp SHHHHHHHHHHHHHHTTTHHHHHHHT-TCCHHHHH
T ss_pred HhHHHHHHHHHHHHHhhhHHHHHHHc-CCCHHHHH
Confidence 56667778888899999999999999 55555543
No 141
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=29.02 E-value=1e+02 Score=22.13 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 68 EEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 68 Ed~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
.+..++.++...|-...+||..+ |-+...|+.+....+++
T Consensus 29 ~~r~vl~l~~~~g~s~~EIA~~l-giS~~tV~~~l~ra~~k 68 (113)
T 1xsv_A 29 KQRNYLELFYLEDYSLSEIADTF-NVSRQAVYDNIRRTGDL 68 (113)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 34455666667788899999999 68888998887765544
No 142
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=27.20 E-value=55 Score=20.89 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCC
Q 044161 11 WHEEEDELLVTFVTLFGERRWDYIAKASGLKRS 43 (229)
Q Consensus 11 WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt 43 (229)
...-|.+.|.+++..+ ++-...|+.||..|+
T Consensus 18 l~~~Er~~I~~aL~~~--gn~~~aA~~LGIsr~ 48 (61)
T 1g2h_A 18 IGFYEAQVLKLFYAEY--PSTRKLAQRLGVSHT 48 (61)
T ss_dssp CSHHHHHHHHHHHHHS--CSHHHHHHHTTSCTH
T ss_pred HHHHHHHHHHHHHHHh--CCHHHHHHHhCCCHH
Confidence 4556888888888888 578999999986665
No 143
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=26.29 E-value=34 Score=26.32 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=26.6
Q ss_pred hHHHHhhCCCCCcccccccccccccCCCCCCCCCHHHHHHHHH
Q 044161 32 DYIAKASGLKRSGKSCGLRWLNYLCPNIKHGYISTEEEQIIIQ 74 (229)
Q Consensus 32 ~~IA~~l~~~Rt~~qcr~Rw~~~L~p~~~~~~WT~eEd~~L~~ 74 (229)
..||.++. |+|+.+||..+. +. ..+|+||++.+.+
T Consensus 120 ~~va~~i~-gkt~eeir~~f~------I~-~d~t~eEe~~ir~ 154 (159)
T 2ast_A 120 KTVANMIK-GKTPEEIRKTFN------IK-NDFTEEEEAQVRK 154 (159)
T ss_dssp HHHHHHHS-SCCHHHHHHHTT------CC-CCSCTTHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHcC------CC-CCCCHHHHHHHHH
Confidence 56888897 999999998762 22 4589998887653
No 144
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=26.20 E-value=1.2e+02 Score=18.52 Aligned_cols=38 Identities=18% Similarity=0.200 Sum_probs=28.1
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 69 EQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 69 d~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
+..++.+ -..|-.-.+||..+ |-+...|+.+...++++
T Consensus 3 e~~vl~l-~~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 3 ERQVLKL-IDEGYTNHGISEKL-HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHH-HHTSCCSHHHHHHT-CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 3344555 35677789999999 68999999988776654
No 145
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=26.01 E-value=1.9e+02 Score=21.02 Aligned_cols=78 Identities=14% Similarity=0.066 Sum_probs=48.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCccccccccccc------ccCCCC----CCCCCHHHHHHHHHHHH
Q 044161 8 KGPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNY------LCPNIK----HGYISTEEEQIIIQLHK 77 (229)
Q Consensus 8 kg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~------L~p~~~----~~~WT~eEd~~L~~~v~ 77 (229)
..++|.++-..++.++. .| ..-..||+.++ .+...++ ||... +.+... ....+.+....|++++.
T Consensus 30 ~~~~s~e~r~~iv~~~~-~G-~s~~~iA~~lg--is~~TV~-rw~~~~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~ 104 (149)
T 1k78_A 30 GRPLPDVVRQRIVELAH-QG-VRPCDISRQLR--VSHGCVS-KILGRYYETGSIKPGVIGGSKPKVATPKVVEKIAEYKR 104 (149)
T ss_dssp TSCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHH-HHHHHHHHHSCCCCCCCCCCCCSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHHHHHcCCCCccCCCCCCCCCCCHHHHHHHHHHHH
Confidence 34799999999998884 46 56899999997 4444443 33322 222211 23468888888888876
Q ss_pred HhC-CCHHHHHhhC
Q 044161 78 KWG-NKWSRIARNL 90 (229)
Q Consensus 78 ~~G-~~W~~Ia~~l 90 (229)
+.+ ..-.+|+..+
T Consensus 105 ~~~~~s~~~i~~~l 118 (149)
T 1k78_A 105 QNPTMFAWEIRDRL 118 (149)
T ss_dssp HCTTCCHHHHHHHH
T ss_pred hCcchhHHHHHHHH
Confidence 643 2223454444
No 146
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=25.78 E-value=1.2e+02 Score=19.01 Aligned_cols=44 Identities=14% Similarity=0.163 Sum_probs=32.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 62 GYISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 62 ~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
...|+.|-+.|.- + ..|..-.+||..+ |-+...|+.+...+.++
T Consensus 10 ~~L~~~e~~il~~-~-~~g~s~~eIA~~l-~is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L-VQDKTTKEIASEL-FISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H-TTTCCHHHHHHHH-TSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H-HcCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 3567766665544 4 6677899999999 67888998887765544
No 147
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=24.90 E-value=1.1e+02 Score=23.75 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=25.2
Q ss_pred HHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 73 IQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 73 ~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
+.++...|-...+||..+ |-|...|+.+....+++
T Consensus 196 l~l~~~~g~s~~EIA~~l-gis~~~V~~~~~ra~~~ 230 (239)
T 1rp3_A 196 IQLIFYEELPAKEVAKIL-ETSVSRVSQLKAKALER 230 (239)
T ss_dssp HHHHHTSCCCHHHHHHHT-TSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHh-CCCHHHHHHHHHHHHHH
Confidence 333334577899999999 68888888887665544
No 148
>2of5_H Leucine-rich repeat and death domain-containing protein; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=24.68 E-value=86 Score=22.93 Aligned_cols=29 Identities=21% Similarity=0.503 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhCCCHHHHHhhCCCCCHHHH
Q 044161 69 EQIIIQLHKKWGNKWSRIARNLPGRTDNEI 98 (229)
Q Consensus 69 d~~L~~~v~~~G~~W~~Ia~~l~gRt~~qi 98 (229)
+..|..+....|..|..+|+.| |=+..+|
T Consensus 13 ~~~l~~ia~~lg~dWk~LAr~L-g~s~~~I 41 (118)
T 2of5_H 13 QSNLLSVAGRLGLDWPAVALHL-GVSYREV 41 (118)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHT-TCCHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHc-CCCHHHH
Confidence 3467778888999999999999 4555444
No 149
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=24.61 E-value=2.1e+02 Score=21.10 Aligned_cols=66 Identities=15% Similarity=0.100 Sum_probs=42.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCccccccccccc------ccCCCC----CCCCCHHHHHHHHHHHHH
Q 044161 9 GPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNY------LCPNIK----HGYISTEEEQIIIQLHKK 78 (229)
Q Consensus 9 g~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~------L~p~~~----~~~WT~eEd~~L~~~v~~ 78 (229)
.++|.++-..++.++. -| .....||+.++ .+...++ ||.+. +.+... ....+.+..+.|++++.+
T Consensus 24 ~~~s~e~r~~ii~l~~-~G-~s~~~IA~~lg--is~~TV~-rwl~r~~~~G~~~~~~r~gr~~~~~~~~~~~~I~~~~~~ 98 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAH-QG-VRPCDISRQLR--VSHGCVS-KILGRYYETGSIRPGVIGGSKPKVATPKVVEKIGDYKRQ 98 (159)
T ss_dssp CSSCHHHHHHHHHHHH-HT-CCHHHHHHHHT--CCSHHHH-HHHCCSSTTSCCCCCCCCCCCCCCCCTTHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH-HHHHHHHhcCCccCCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 4689999989988885 57 56899999997 4444433 33332 222111 234677777777777765
Q ss_pred h
Q 044161 79 W 79 (229)
Q Consensus 79 ~ 79 (229)
.
T Consensus 99 ~ 99 (159)
T 2k27_A 99 N 99 (159)
T ss_dssp C
T ss_pred C
Confidence 4
No 150
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=24.17 E-value=52 Score=25.55 Aligned_cols=43 Identities=16% Similarity=0.124 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCCChhHHHHhhCCCCCcccccccccccccCC
Q 044161 14 EEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCGLRWLNYLCPN 58 (229)
Q Consensus 14 eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr~Rw~~~L~p~ 58 (229)
+-|.+|+.++++.|.-.+..||+.++ -+...|+.|........
T Consensus 27 ~~d~~IL~~L~~~~~~s~~eLA~~lg--lS~~tv~~rl~~L~~~G 69 (171)
T 2e1c_A 27 EIDKKIIKILQNDGKAPLREISKITG--LAESTIHERIRKLRESG 69 (171)
T ss_dssp HHHHHHHHHHHHCTTCCHHHHHHHHT--SCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCC
Confidence 45677888888888789999999997 67788888776665443
No 151
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=23.91 E-value=98 Score=22.38 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=22.5
Q ss_pred hCCCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 79 WGNKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 79 ~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
.|-...+||..+ |-|...|+.+....+++
T Consensus 123 ~g~s~~EIA~~l-gis~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 123 RGYSYREIATIL-SKNLKSIDNTIQRIRKK 151 (164)
T ss_dssp TTCCHHHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Confidence 467789999999 68888888887765443
No 152
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=23.06 E-value=1.1e+02 Score=17.13 Aligned_cols=36 Identities=11% Similarity=0.095 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCCCCccccc
Q 044161 9 GPWHEEEDELLVTFVTLFGERRWDYIAKASGLKRSGKSCG 48 (229)
Q Consensus 9 g~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~Rt~~qcr 48 (229)
...++++-..++.++. .| .....||+.++ -+...++
T Consensus 4 ~~l~~~~~~~i~~~~~-~g-~s~~~IA~~lg--is~~Tv~ 39 (51)
T 1tc3_C 4 SALSDTERAQLDVMKL-LN-VSLHEMSRKIS--RSRHCIR 39 (51)
T ss_dssp CCCCHHHHHHHHHHHH-TT-CCHHHHHHHHT--CCHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cC-CCHHHHHHHHC--cCHHHHH
Confidence 4578888777777663 46 56899999997 4444443
No 153
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=22.95 E-value=2e+02 Score=20.43 Aligned_cols=35 Identities=14% Similarity=0.044 Sum_probs=27.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCChhHHHHhhCCC
Q 044161 7 SKGPWHEEEDELLVTFVTLFGERRWDYIAKASGLK 41 (229)
Q Consensus 7 kkg~WT~eEDe~L~~lv~~~g~~~W~~IA~~l~~~ 41 (229)
++..+|.|+-..++.++...|...=..||+.+|..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gvs 38 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRKGEIARRFNIP 38 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTCC
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCCC
Confidence 56789999999999999776733333799999854
No 154
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=22.39 E-value=1.2e+02 Score=18.79 Aligned_cols=42 Identities=10% Similarity=0.056 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC----hhHHHHhhCCCCCcccccccccc
Q 044161 7 SKGPWHEEEDELLVTFVTLFGERR----WDYIAKASGLKRSGKSCGLRWLN 53 (229)
Q Consensus 7 kkg~WT~eEDe~L~~lv~~~g~~~----W~~IA~~l~~~Rt~~qcr~Rw~~ 53 (229)
++.+||+|.-..++.++ ..| .. -..||..++. + ...-.+|..
T Consensus 2 ~r~~ys~efK~~~~~~~-~~g-~s~~~~~~~vA~~~gI--s-~~tl~~W~~ 47 (59)
T 2glo_A 2 SRRIFTPHFKLQVLESY-RND-NDCKGNQRATARKYNI--H-RRQIQKWLQ 47 (59)
T ss_dssp CCCCCCHHHHHHHHHHH-HHC-TTTTTCHHHHHHHTTS--C-HHHHHHHHT
T ss_pred CCCcCCHHHHHHHHHHH-HcC-CCcchHHHHHHHHHCc--C-HHHHHHHHH
Confidence 35689999988875444 345 34 7899999984 2 334445654
No 155
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=22.21 E-value=1.2e+02 Score=22.25 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=24.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHH
Q 044161 58 NIKHGYISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEI 98 (229)
Q Consensus 58 ~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qi 98 (229)
.+-...=|.+ .|..+....|..|..+|+.| |=+..+|
T Consensus 16 ~~~~~~~t~~---~l~~Ia~~LG~~Wk~LAR~L-Glse~dI 52 (115)
T 2o71_A 16 HILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (115)
T ss_dssp CGGGSCCCHH---HHHHHHHHCCTTHHHHHHHT-TCCHHHH
T ss_pred hhccCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 3333444544 35556788999999999998 4555444
No 156
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=21.87 E-value=50 Score=24.91 Aligned_cols=30 Identities=17% Similarity=0.078 Sum_probs=23.2
Q ss_pred HhCCCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 78 KWGNKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 78 ~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
..|-...+||..+ |-+...|+++....+++
T Consensus 149 ~~g~s~~eIA~~l-gis~~tV~~~l~ra~~~ 178 (184)
T 2q1z_A 149 FGDLTHRELAAET-GLPLGTIKSRIRLALDR 178 (184)
T ss_dssp HSCCSSCCSTTTC-CCCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 3467788999999 67888999888776544
No 157
>2of5_A Death domain-containing protein cradd; death domain complex, apoptosis; 3.20A {Homo sapiens}
Probab=21.06 E-value=1.1e+02 Score=22.38 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=24.9
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHH
Q 044161 56 CPNIKHGYISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEI 98 (229)
Q Consensus 56 ~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qi 98 (229)
.+.+-...=|.+ .|..+....|..|..+|+.| |=+..+|
T Consensus 14 ~~~~~~~~~t~~---~l~~Ia~~lG~~Wk~LAR~L-Glse~dI 52 (114)
T 2of5_A 14 PSHILNSSPSDR---QINQLAQRLGPEWEPMVLSL-GLSQTDI 52 (114)
T ss_dssp --CCTTSCCCHH---HHHHHHHTCCSTHHHHHHTT-TCCHHHH
T ss_pred CchhhcCCCCHH---HHHHHHHHHhhhHHHHHHHc-CCCHHHH
Confidence 334444445555 35556788999999999998 4555544
No 158
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=21.01 E-value=1.1e+02 Score=20.77 Aligned_cols=43 Identities=19% Similarity=0.134 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHHhhCCCCCHHHHHHHHHHhhhH
Q 044161 63 YISTEEEQIIIQLHKKWGNKWSRIARNLPGRTDNEIKNYWRTRIRK 108 (229)
Q Consensus 63 ~WT~eEd~~L~~~v~~~G~~W~~Ia~~l~gRt~~qiknrw~~~l~~ 108 (229)
..|+.|-+.|.- + ..|-.-.+||..+ |-+...|+.+...++++
T Consensus 29 ~Lt~~e~~vl~l-~-~~g~s~~eIA~~l-~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 29 MLTEREMEILLL-I-AKGYSNQEIASAS-HITIKTVKTHVSNILSK 71 (91)
T ss_dssp GCCSHHHHHHHH-H-HTTCCTTHHHHHH-TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H-HcCCCHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 456666665544 4 6788889999999 68999999988776554
No 159
>2o71_A Death domain-containing protein cradd; raidd, apoptosis; 2.00A {Homo sapiens}
Probab=20.85 E-value=72 Score=23.47 Aligned_cols=25 Identities=20% Similarity=0.482 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhCCCChhHHHHhhCCC
Q 044161 16 DELLVTFVTLFGERRWDYIAKASGLK 41 (229)
Q Consensus 16 De~L~~lv~~~g~~~W~~IA~~l~~~ 41 (229)
|+.|..+....| ..|..+|..||..
T Consensus 24 ~~~l~~Ia~~LG-~~Wk~LAR~LGls 48 (115)
T 2o71_A 24 DRQINQLAQRLG-PEWEPMVLSLGLS 48 (115)
T ss_dssp HHHHHHHHHHCC-TTHHHHHHHTTCC
T ss_pred HHHHHHHHHHHh-hhHHHHHHHcCCC
Confidence 346777788889 8999999999743
Done!