BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044162
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 372
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 109/266 (40%), Gaps = 59/266 (22%)
Query: 153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKER 212
+K RP + FL++ S L+E+ + T+G + YA K++DP K F R+++R+D +
Sbjct: 74 IKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQ 133
Query: 213 KYLDLVLGQENS-IVIVDDTESVWGGRVENLITVGSYX-------XXXXXXXNDCKSYSE 264
K L + + S +V++DD VW NLI V Y + ++ E
Sbjct: 134 KSLRRLFPCDTSMVVVIDDRGDVWDWN-PNLIKVVPYEFFVGIGDINSNFLSGNREALEE 192
Query: 265 Q------------------------MSDESES----------DGALANILRALKAVHALY 290
Q + DE + D L + + LK +HA+Y
Sbjct: 193 QNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLKDIHAVY 252
Query: 291 FDN-------PGNHAAGRDVRSCLAKIRSRILMGCTILF------GDDDFEELPLTWSRA 337
++ GNH +V + K++ ++L GC +LF G D W A
Sbjct: 253 YEEENDISSRSGNHKHA-NVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKW--A 309
Query: 338 EEMGAICTLVTDASVTHVVSSNTQSE 363
GA L TH++++ ++E
Sbjct: 310 MSFGAEVVLDFSVPPTHLIAAKIRTE 335
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 442
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Query: 153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKER 212
+K RP + FL++ S L+E+ + T+G + YA K++DP K F R+++R+D +
Sbjct: 82 IKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQ 141
Query: 213 KYLDLVLGQENS-IVIVDDTESVWGGRVENLITVGSY 248
K L + + S +V++DD VW NLI V Y
Sbjct: 142 KSLRRLFPCDTSMVVVIDDRGDVWDWN-PNLIKVVPY 177
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 273 DGALANILRALKAVHALYFDN-------PGNHAAGRDVRSCLAKIRSRILMGCTILF--- 322
D L + + LK +HA+Y++ GNH +V + K++ ++L GC +LF
Sbjct: 305 DHELERLEKVLKDIHAVYYEEENDISSRSGNHKHA-NVGLIIPKMKQKVLKGCRLLFSGV 363
Query: 323 ---GDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA 368
G D W A GA L TH++++ ++E + A
Sbjct: 364 IPLGVDVLSSDIAKW--AMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKA 410
>pdb|2HHL|A Chain A, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|B Chain B, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|C Chain C, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|D Chain D, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
Length = 195
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 5/122 (4%)
Query: 131 SSDKISRGNDLFKIKIGDNV--LLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVK 188
S IS + + ++I + + V RP V FL+ +LFE + T +YA
Sbjct: 43 SFKPISNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAKYADPVAD 102
Query: 189 LLDPDCKYFNSRIITREDFKQKERKYLDLV-LGQENS-IVIVDDTESVWGGRVENLITVG 246
LLD F +R+ + DL LG+E S ++IVD++ + + EN + V
Sbjct: 103 LLD-RWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQ 161
Query: 247 SY 248
S+
Sbjct: 162 SW 163
>pdb|2Q5E|A Chain A, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|B Chain B, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|C Chain C, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|D Chain D, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|E Chain E, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|F Chain F, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|G Chain G, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|H Chain H, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
Length = 187
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
Query: 156 RPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYL 215
RP+V FL LFE + T +YA LLD C F +R+ RE + Y+
Sbjct: 59 RPYVDEFLRRMGELFECVLFTASLAKYADPVTDLLD-RCGVFRARLF-RESCVFHQGCYV 116
Query: 216 -DLV-LGQE-NSIVIVDDTESVWGGRVENLITVGSY 248
DL LG++ +I+D++ + + EN + V S+
Sbjct: 117 KDLSRLGRDLRKTLILDNSPASYIFHPENAVPVQSW 152
>pdb|3L0Y|A Chain A, Crystal Structure Of Scp1 Phosphatase D98a Mutant
pdb|3L0Y|B Chain B, Crystal Structure Of Scp1 Phosphatase D98a Mutant
Length = 184
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 156 RPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYL 215
RP V FL+ LFE + T +YA LLD F +R+ +
Sbjct: 60 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVK 118
Query: 216 DLV-LGQE-NSIVIVDDTESVWGGRVENLITVGS-YXXXXXXXXNDCKSYSEQMS 267
DL LG++ ++I+D++ + + +N + V S + +D + EQ+S
Sbjct: 119 DLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLS 173
>pdb|1TA0|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein With Associated Ligand
Length = 197
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 156 RPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYL 215
RP V FL+ LFE + T +YA LLD F +R+ +
Sbjct: 57 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVK 115
Query: 216 DLV-LGQE-NSIVIVDDTESVWGGRVENLITVGS-YXXXXXXXXNDCKSYSEQMS 267
DL LG++ ++I+D++ + + +N + V S + +D + EQ+S
Sbjct: 116 DLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLS 170
>pdb|1UX4|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
pdb|1UX4|B Chain B, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Tethered-Dimer Architecture
Length = 410
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 205 EDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYXXXXXXXXNDCKSYSE 264
ED K E+ DL + + ++ + ES WG R+ L V SY + +
Sbjct: 140 EDAKPPEKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDK 199
Query: 265 QMSDESESDGALANILRALKAV 286
+S ESD L N+ + AV
Sbjct: 200 AVSALQESDN-LRNVFNVILAV 220
>pdb|1UX5|A Chain A, Crystal Structures Of A Formin Homology-2 Domain Reveal A
Flexibly Tethered Dimer Architecture
Length = 411
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 205 EDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYXXXXXXXXNDCKSYSE 264
ED K E+ DL + + ++ + ES WG R+ L V SY + +
Sbjct: 146 EDAKPPEKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDK 205
Query: 265 QMSDESESDGALANILRALKAV 286
+S ESD L N+ + AV
Sbjct: 206 AVSALQESDN-LRNVFNVILAV 226
>pdb|2GHQ|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHQ|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
Length = 181
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 156 RPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYL 215
RP V FL+ LFE + T +YA LLD F +R+ +
Sbjct: 57 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVK 115
Query: 216 DLV-LGQE-NSIVIVDDTESVWGGRVENLITVGS-YXXXXXXXXNDCKSYSEQMS 267
DL LG++ ++I+D++ + + +N + V S + +D + EQ+S
Sbjct: 116 DLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLS 170
>pdb|1Y64|B Chain B, Bni1p Formin Homology 2 Domain Complexed With Atp-actin
Length = 443
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
Query: 205 EDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYXXXXXXXXNDCKSYSE 264
ED K E+ DL + + ++ + ES WG R+ L V SY + +
Sbjct: 169 EDAKPPEKDPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDK 228
Query: 265 QMSDESESDGALANILRALKAV 286
+S ESD L N+ + AV
Sbjct: 229 AVSALQESDN-LRNVFNVILAV 249
>pdb|2DCN|A Chain A, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|B Chain B, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|C Chain C, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|D Chain D, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|E Chain E, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|F Chain F, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|G Chain G, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|H Chain H, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|I Chain I, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|J Chain J, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|K Chain K, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|2DCN|L Chain L, Crystal Structure Of 2-Keto-3-Deoxygluconate Kinase From
Sulfolobus Tokodaii Complexed With
2-Keto-6-Phosphogluconate (Alpha-Furanose Form)
pdb|1WYE|A Chain A, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|B Chain B, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|C Chain C, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|D Chain D, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|E Chain E, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
pdb|1WYE|F Chain F, Crystal Structure Of 2-keto-3-deoxygluconate Kinase (form
1) From Sulfolobus Tokodaii
Length = 311
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 287 HALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAE 338
H YF+ H AG + C+A I+ G GDD+F + W R +
Sbjct: 24 HVSYFEK---HVAGSEANYCVAFIKQGNECGIIAKVGDDEFGYNAIEWLRGQ 72
>pdb|3PGL|A Chain A, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
pdb|3PGL|B Chain B, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
Length = 180
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 4/115 (3%)
Query: 156 RPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYL 215
RP V FL+ LFE + T +YA LLD F +R+ +
Sbjct: 56 RPHVDEFLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVK 114
Query: 216 DLV-LGQE-NSIVIVDDTESVWGGRVENLITVGS-YXXXXXXXXNDCKSYSEQMS 267
DL LG++ ++I+D++ + + +N + V S + +D + EQ+S
Sbjct: 115 DLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWFDNMSDTELHDLLPFFEQLS 169
>pdb|2V78|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2V78|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase
pdb|2VAR|A Chain A, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|B Chain B, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
pdb|2VAR|C Chain C, Crystal Structure Of Sulfolobus Solfataricus 2-Keto-3-
Deoxygluconate Kinase Complexed With 2-Keto-3-
Deoxygluconate
Length = 313
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 290 YFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTD 349
YF+ H AG ++ C+A +R+ + G+D+F + + +SRA+ + V +
Sbjct: 27 YFEK---HVAGSELNFCIAVVRNHLSCSLIARVGNDEFGKNIIEYSRAQGIDTSHIKVDN 83
Query: 350 ASVTHV 355
S T +
Sbjct: 84 ESFTGI 89
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|I Chain I, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|AA Chain a, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|II Chain i, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|A Chain A, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|I Chain I, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|AA Chain a, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|II Chain i, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 559
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 130 FSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEISVCTLG-----NREYAT 184
+S+ + R N+L K KI ++ R +R + + + SV TLG N +
Sbjct: 104 IASELLKRANELVKNKIHPTTIITGFRVALREAIRFINEVLSTSVDTLGKETLINIAKTS 163
Query: 185 RAVKLLDPDCKYFNSRII 202
+ K++ D +F++ ++
Sbjct: 164 MSSKIIGADSDFFSNMVV 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,784,938
Number of Sequences: 62578
Number of extensions: 362759
Number of successful extensions: 780
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 769
Number of HSP's gapped (non-prelim): 16
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)