Query 044162
Match_columns 369
No_of_seqs 296 out of 1222
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 12:01:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044162.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044162hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0323 TFIIF-interacting CTD 100.0 3.1E-62 6.8E-67 503.9 17.0 327 35-369 87-500 (635)
2 TIGR02250 FCP1_euk FCP1-like p 100.0 5.5E-39 1.2E-43 283.8 13.1 155 88-251 1-156 (156)
3 KOG1605 TFIIF-interacting CTD 100.0 2.2E-35 4.8E-40 278.5 10.5 172 86-310 82-259 (262)
4 TIGR02251 HIF-SF_euk Dullard-l 100.0 6.6E-34 1.4E-38 252.8 15.7 154 93-288 1-159 (162)
5 PF03031 NIF: NLI interacting 100.0 7.9E-33 1.7E-37 243.7 13.6 150 94-288 1-154 (159)
6 TIGR02245 HAD_IIID1 HAD-superf 100.0 2.2E-30 4.8E-35 236.0 14.7 159 87-309 15-190 (195)
7 KOG2832 TFIIF-interacting CTD 99.9 1.6E-25 3.5E-30 215.9 11.1 157 90-312 186-345 (393)
8 smart00577 CPDc catalytic doma 99.9 5.8E-24 1.3E-28 186.0 14.2 140 92-252 1-145 (148)
9 COG5190 FCP1 TFIIF-interacting 99.8 2.9E-20 6.3E-25 183.9 7.3 170 89-309 208-380 (390)
10 COG5190 FCP1 TFIIF-interacting 99.8 1.5E-19 3.3E-24 178.9 8.2 273 71-365 4-336 (390)
11 PF12738 PTCB-BRCT: twin BRCT 98.8 6.5E-09 1.4E-13 77.6 3.7 52 318-369 1-52 (63)
12 PF00533 BRCT: BRCA1 C Terminu 98.2 1E-06 2.2E-11 67.4 3.8 58 311-368 2-61 (78)
13 TIGR01681 HAD-SF-IIIC HAD-supe 98.1 2.6E-06 5.5E-11 72.7 3.7 80 154-234 29-120 (128)
14 PLN03243 haloacid dehalogenase 98.0 6.8E-06 1.5E-10 78.6 4.9 92 152-245 107-205 (260)
15 TIGR01684 viral_ppase viral ph 98.0 2.4E-05 5.3E-10 75.6 7.9 88 73-207 109-198 (301)
16 TIGR01685 MDP-1 magnesium-depe 97.9 1.5E-05 3.3E-10 71.8 6.1 96 150-246 41-154 (174)
17 cd01427 HAD_like Haloacid deha 97.9 1.4E-05 3.1E-10 65.9 5.4 101 95-233 1-124 (139)
18 PHA03398 viral phosphatase sup 97.9 5.1E-05 1.1E-09 73.5 9.1 78 86-207 121-200 (303)
19 PRK13288 pyrophosphatase PpaX; 97.9 1.4E-05 3.1E-10 73.2 5.1 92 152-245 80-178 (214)
20 PLN02575 haloacid dehalogenase 97.9 1.6E-05 3.5E-10 79.9 5.2 90 153-244 215-311 (381)
21 smart00292 BRCT breast cancer 97.8 2.8E-05 6E-10 58.4 5.0 53 313-365 1-55 (80)
22 PRK10563 6-phosphogluconate ph 97.8 1.3E-05 2.7E-10 73.9 3.3 92 152-246 86-183 (221)
23 PRK13225 phosphoglycolate phos 97.8 2.1E-05 4.6E-10 75.7 4.9 91 153-245 141-235 (273)
24 PRK10725 fructose-1-P/6-phosph 97.8 1.8E-05 3.8E-10 70.8 4.0 89 153-244 87-181 (188)
25 PRK13226 phosphoglycolate phos 97.8 4.5E-05 9.7E-10 71.1 6.5 91 152-244 93-190 (229)
26 cd00027 BRCT Breast Cancer Sup 97.8 3.7E-05 8E-10 56.4 4.7 48 317-364 1-49 (72)
27 TIGR01662 HAD-SF-IIIA HAD-supe 97.7 4.9E-05 1.1E-09 64.4 5.5 75 153-231 24-112 (132)
28 TIGR01656 Histidinol-ppas hist 97.7 7.3E-05 1.6E-09 65.0 6.3 107 95-235 2-131 (147)
29 TIGR01686 FkbH FkbH-like domai 97.7 5.4E-05 1.2E-09 74.4 6.0 110 92-235 2-116 (320)
30 TIGR01261 hisB_Nterm histidino 97.7 0.00012 2.5E-09 65.1 6.9 93 153-248 28-146 (161)
31 PRK13223 phosphoglycolate phos 97.7 5.4E-05 1.2E-09 72.7 5.0 90 153-244 100-196 (272)
32 TIGR01672 AphA HAD superfamily 97.6 0.00016 3.4E-09 68.4 7.1 136 88-243 58-205 (237)
33 PHA02530 pseT polynucleotide k 97.6 6.3E-05 1.4E-09 72.6 4.3 122 91-245 156-292 (300)
34 TIGR00338 serB phosphoserine p 97.5 9.2E-05 2E-09 67.9 3.9 92 153-245 84-191 (219)
35 COG4996 Predicted phosphatase 97.5 0.0005 1.1E-08 58.8 7.6 133 95-249 2-146 (164)
36 TIGR01664 DNA-3'-Pase DNA 3'-p 97.4 0.0004 8.7E-09 62.0 7.2 74 155-232 43-137 (166)
37 COG0637 Predicted phosphatase/ 97.4 0.00018 3.8E-09 67.0 5.1 84 152-237 84-174 (221)
38 TIGR00213 GmhB_yaeD D,D-heptos 97.4 0.00073 1.6E-08 60.4 8.5 87 153-243 25-144 (176)
39 PRK08942 D,D-heptose 1,7-bisph 97.4 0.0011 2.4E-08 59.3 9.3 79 153-235 28-133 (181)
40 PRK09552 mtnX 2-hydroxy-3-keto 97.4 0.0007 1.5E-08 62.5 8.2 91 153-243 73-181 (219)
41 PLN02940 riboflavin kinase 97.4 0.00021 4.7E-09 72.0 4.9 91 152-244 91-189 (382)
42 PF05152 DUF705: Protein of un 97.3 0.0018 3.8E-08 62.3 9.8 79 86-207 115-194 (297)
43 TIGR01489 DKMTPPase-SF 2,3-dik 97.2 0.00098 2.1E-08 59.1 7.2 49 153-203 71-120 (188)
44 PF13419 HAD_2: Haloacid dehal 97.2 0.00088 1.9E-08 57.8 6.2 83 151-235 74-163 (176)
45 TIGR01533 lipo_e_P4 5'-nucleot 97.2 0.0025 5.5E-08 61.3 9.8 122 90-233 72-199 (266)
46 TIGR01668 YqeG_hyp_ppase HAD s 97.1 0.0012 2.7E-08 58.8 6.8 107 82-236 14-124 (170)
47 PF12689 Acid_PPase: Acid Phos 97.1 0.0013 2.7E-08 59.1 6.7 122 94-235 4-137 (169)
48 PRK13582 thrH phosphoserine ph 97.1 0.0013 2.7E-08 59.7 6.7 82 152-234 66-156 (205)
49 PRK08238 hypothetical protein; 97.1 0.0007 1.5E-08 70.3 5.5 88 153-247 71-166 (479)
50 KOG3226 DNA repair protein [Re 97.0 0.0007 1.5E-08 66.7 4.4 57 312-368 315-371 (508)
51 TIGR02253 CTE7 HAD superfamily 96.9 0.0014 3E-08 60.0 5.2 79 152-232 92-177 (221)
52 COG2179 Predicted hydrolase of 96.9 0.0046 1E-07 55.1 8.1 127 75-249 10-141 (175)
53 PRK06769 hypothetical protein; 96.7 0.0061 1.3E-07 54.5 7.5 90 153-244 27-132 (173)
54 PLN02770 haloacid dehalogenase 96.7 0.0018 3.9E-08 61.2 4.2 93 152-246 106-205 (248)
55 TIGR01449 PGP_bact 2-phosphogl 96.7 0.0018 4E-08 58.8 4.0 95 152-248 83-184 (213)
56 TIGR02254 YjjG/YfnB HAD superf 96.6 0.0038 8.2E-08 57.0 6.0 91 152-244 95-193 (224)
57 COG0546 Gph Predicted phosphat 96.6 0.0068 1.5E-07 56.1 7.6 89 153-243 88-183 (220)
58 PRK05446 imidazole glycerol-ph 96.6 0.01 2.2E-07 59.4 8.9 105 92-232 1-131 (354)
59 TIGR01993 Pyr-5-nucltdase pyri 96.6 0.0016 3.5E-08 58.2 3.0 87 153-243 83-179 (184)
60 TIGR01428 HAD_type_II 2-haloal 96.6 0.0019 4.2E-08 58.3 3.5 89 153-243 91-186 (198)
61 TIGR01454 AHBA_synth_RP 3-amin 96.6 0.0025 5.5E-08 57.9 4.2 92 152-245 73-171 (205)
62 PRK11009 aphA acid phosphatase 96.5 0.0073 1.6E-07 57.1 7.4 82 151-236 111-198 (237)
63 PLN02954 phosphoserine phospha 96.5 0.0062 1.3E-07 55.9 6.7 49 153-201 83-133 (224)
64 TIGR01509 HAD-SF-IA-v3 haloaci 96.5 0.0054 1.2E-07 54.0 5.8 80 153-235 84-170 (183)
65 PRK06063 DNA polymerase III su 96.5 0.0027 5.9E-08 62.4 4.2 57 313-369 231-289 (313)
66 PRK09449 dUMP phosphatase; Pro 96.4 0.0055 1.2E-07 56.3 5.7 78 153-232 94-178 (224)
67 TIGR01663 PNK-3'Pase polynucle 96.4 0.0079 1.7E-07 63.1 7.5 107 90-232 165-294 (526)
68 TIGR01422 phosphonatase phosph 96.4 0.004 8.6E-08 58.6 4.4 92 153-245 98-197 (253)
69 PRK06195 DNA polymerase III su 96.3 0.0034 7.4E-08 61.5 3.9 56 313-368 219-284 (309)
70 KOG3109 Haloacid dehalogenase- 96.3 0.0043 9.3E-08 57.6 3.9 82 153-237 99-193 (244)
71 PRK14350 ligA NAD-dependent DN 96.2 0.0078 1.7E-07 64.9 5.9 56 314-369 593-649 (669)
72 PRK14988 GMP/IMP nucleotidase; 96.1 0.004 8.7E-08 57.9 3.1 90 153-244 92-188 (224)
73 PRK07956 ligA NAD-dependent DN 96.1 0.0082 1.8E-07 64.8 5.8 69 301-369 566-646 (665)
74 PRK10826 2-deoxyglucose-6-phos 96.1 0.0051 1.1E-07 56.6 3.7 91 153-245 91-188 (222)
75 TIGR03351 PhnX-like phosphonat 95.9 0.015 3.2E-07 53.3 5.6 91 153-244 86-185 (220)
76 PRK13222 phosphoglycolate phos 95.9 0.017 3.7E-07 52.8 6.0 90 152-243 91-187 (226)
77 COG1011 Predicted hydrolase (H 95.8 0.017 3.6E-07 52.9 5.7 82 152-235 97-184 (229)
78 PRK11587 putative phosphatase; 95.8 0.013 2.9E-07 53.8 5.1 90 152-244 81-177 (218)
79 TIGR01670 YrbI-phosphatas 3-de 95.8 0.013 2.9E-07 51.3 4.7 86 153-245 29-115 (154)
80 PRK09456 ?-D-glucose-1-phospha 95.8 0.0061 1.3E-07 55.3 2.5 96 151-247 81-183 (199)
81 COG5275 BRCT domain type II [G 95.7 0.01 2.2E-07 54.7 3.8 61 308-368 150-212 (276)
82 PRK14351 ligA NAD-dependent DN 95.7 0.015 3.2E-07 63.0 5.6 55 315-369 610-666 (689)
83 COG0560 SerB Phosphoserine pho 95.6 0.019 4E-07 53.4 5.0 50 153-203 76-126 (212)
84 TIGR01459 HAD-SF-IIA-hyp4 HAD- 95.6 0.025 5.4E-07 53.1 5.9 76 156-232 26-105 (242)
85 PLN02779 haloacid dehalogenase 95.5 0.014 3.1E-07 56.4 4.2 92 153-245 143-242 (286)
86 TIGR02009 PGMB-YQAB-SF beta-ph 95.5 0.0084 1.8E-07 53.1 2.4 87 153-243 87-180 (185)
87 PLN03122 Poly [ADP-ribose] pol 95.4 0.013 2.7E-07 64.3 3.8 59 310-369 185-248 (815)
88 PRK13478 phosphonoacetaldehyde 95.4 0.021 4.6E-07 54.3 4.8 91 153-244 100-198 (267)
89 PF08645 PNK3P: Polynucleotide 95.3 0.015 3.4E-07 51.5 3.4 52 95-178 2-54 (159)
90 TIGR01549 HAD-SF-IA-v1 haloaci 95.3 0.046 9.9E-07 47.0 6.3 76 153-232 63-144 (154)
91 TIGR02252 DREG-2 REG-2-like, H 95.1 0.04 8.8E-07 49.7 5.7 77 153-232 104-187 (203)
92 TIGR01548 HAD-SF-IA-hyp1 haloa 95.1 0.06 1.3E-06 48.6 6.7 77 154-232 106-188 (197)
93 TIGR01990 bPGM beta-phosphoglu 95.1 0.016 3.4E-07 51.3 2.7 88 153-244 86-180 (185)
94 TIGR00575 dnlj DNA ligase, NAD 95.0 0.024 5.2E-07 61.1 4.3 55 315-369 585-640 (652)
95 TIGR01491 HAD-SF-IB-PSPlk HAD- 94.9 0.025 5.4E-07 50.6 3.6 82 153-235 79-176 (201)
96 TIGR01689 EcbF-BcbF capsule bi 94.8 0.069 1.5E-06 45.7 5.7 50 154-204 24-86 (126)
97 COG0272 Lig NAD-dependent DNA 94.7 0.051 1.1E-06 58.0 5.8 57 313-369 593-650 (667)
98 TIGR02247 HAD-1A3-hyp Epoxide 94.7 0.015 3.2E-07 53.0 1.5 92 152-245 92-192 (211)
99 TIGR03333 salvage_mtnX 2-hydro 94.6 0.085 1.8E-06 48.5 6.4 51 152-202 68-119 (214)
100 TIGR01691 enolase-ppase 2,3-di 94.6 0.037 8E-07 51.7 3.9 92 151-244 92-191 (220)
101 PRK11133 serB phosphoserine ph 94.4 0.041 8.9E-07 54.4 4.0 93 152-245 179-287 (322)
102 PF13344 Hydrolase_6: Haloacid 94.4 0.062 1.3E-06 43.9 4.5 30 157-186 17-51 (101)
103 PTZ00445 p36-lilke protein; Pr 94.4 0.047 1E-06 50.7 4.0 142 71-247 24-203 (219)
104 PLN02811 hydrolase 94.2 0.036 7.8E-07 51.1 2.8 90 153-244 77-179 (220)
105 TIGR01493 HAD-SF-IA-v2 Haloaci 94.1 0.019 4.2E-07 50.5 1.0 73 152-232 88-166 (175)
106 TIGR01544 HAD-SF-IE haloacid d 94.0 0.14 2.9E-06 49.7 6.6 95 152-246 119-240 (277)
107 PHA02597 30.2 hypothetical pro 94.0 0.036 7.9E-07 49.9 2.5 94 152-248 72-173 (197)
108 PRK09484 3-deoxy-D-manno-octul 94.0 0.079 1.7E-06 47.7 4.7 73 168-245 63-135 (183)
109 PF09419 PGP_phosphatase: Mito 93.7 0.089 1.9E-06 47.2 4.4 112 78-238 24-154 (168)
110 PLN03123 poly [ADP-ribose] pol 93.7 0.055 1.2E-06 60.7 3.7 60 310-369 389-451 (981)
111 KOG2914 Predicted haloacid-hal 93.6 0.17 3.7E-06 47.4 6.3 98 150-249 88-199 (222)
112 PLN02919 haloacid dehalogenase 93.5 0.085 1.8E-06 60.0 4.8 82 155-237 162-250 (1057)
113 PRK06698 bifunctional 5'-methy 93.0 0.1 2.2E-06 53.8 4.2 89 152-244 328-422 (459)
114 PF08282 Hydrolase_3: haloacid 92.7 0.24 5.2E-06 45.1 5.8 37 157-193 18-55 (254)
115 PF06888 Put_Phosphatase: Puta 92.6 0.15 3.4E-06 48.1 4.5 49 153-203 70-121 (234)
116 PRK00192 mannosyl-3-phosphogly 92.5 0.3 6.5E-06 46.6 6.4 37 157-193 24-61 (273)
117 TIGR02461 osmo_MPG_phos mannos 92.5 0.28 6E-06 45.8 5.9 37 157-193 18-55 (225)
118 TIGR01456 CECR5 HAD-superfamil 92.0 0.32 6.9E-06 47.9 6.0 34 157-190 19-61 (321)
119 TIGR02463 MPGP_rel mannosyl-3- 91.9 0.41 8.8E-06 43.8 6.2 35 159-193 21-56 (221)
120 PRK03669 mannosyl-3-phosphogly 91.8 0.49 1.1E-05 45.1 6.9 33 161-193 31-64 (271)
121 COG0561 Cof Predicted hydrolas 91.6 0.42 9.2E-06 45.0 6.2 59 92-194 2-61 (264)
122 PLN02645 phosphoglycolate phos 91.1 0.31 6.7E-06 47.7 4.8 33 157-189 47-80 (311)
123 TIGR00099 Cof-subfamily Cof su 90.6 0.58 1.2E-05 43.9 6.1 38 157-194 19-57 (256)
124 TIGR02137 HSK-PSP phosphoserin 90.3 0.5 1.1E-05 43.4 5.2 50 153-203 67-116 (203)
125 TIGR01675 plant-AP plant acid 90.1 1.6 3.5E-05 41.1 8.5 130 88-236 72-210 (229)
126 TIGR01487 SPP-like sucrose-pho 90.1 0.7 1.5E-05 42.2 6.0 38 157-194 21-59 (215)
127 smart00775 LNS2 LNS2 domain. T 90.0 0.67 1.5E-05 40.9 5.6 30 155-184 28-58 (157)
128 PRK10513 sugar phosphate phosp 89.9 0.81 1.8E-05 43.1 6.4 65 303-367 163-246 (270)
129 PRK10444 UMP phosphatase; Prov 89.4 0.58 1.3E-05 44.4 5.0 14 95-108 3-16 (248)
130 COG2503 Predicted secreted aci 89.3 0.37 7.9E-06 45.7 3.4 79 83-179 69-148 (274)
131 TIGR01488 HAD-SF-IB Haloacid D 89.1 0.8 1.7E-05 39.9 5.4 49 153-202 72-121 (177)
132 TIGR01484 HAD-SF-IIB HAD-super 88.9 0.89 1.9E-05 41.0 5.6 35 156-190 19-54 (204)
133 COG3882 FkbH Predicted enzyme 88.9 0.79 1.7E-05 47.5 5.7 124 86-248 215-354 (574)
134 PRK10530 pyridoxal phosphate ( 88.5 1.3 2.9E-05 41.5 6.8 34 161-194 27-61 (272)
135 TIGR01458 HAD-SF-IIA-hyp3 HAD- 88.5 0.69 1.5E-05 44.0 4.8 25 157-181 24-49 (257)
136 TIGR01486 HAD-SF-IIB-MPGP mann 88.1 1.1 2.4E-05 42.1 5.9 35 159-193 21-56 (256)
137 PRK10748 flavin mononucleotide 87.8 0.65 1.4E-05 43.3 4.1 85 153-245 112-204 (238)
138 PRK01158 phosphoglycolate phos 87.7 1.4 3.1E-05 40.3 6.3 38 157-194 23-61 (230)
139 COG0241 HisB Histidinol phosph 87.4 1.4 3.1E-05 40.0 5.9 101 153-255 30-153 (181)
140 PLN02887 hydrolase family prot 87.2 1.2 2.6E-05 47.6 6.1 77 73-193 288-365 (580)
141 PRK10187 trehalose-6-phosphate 87.1 1 2.2E-05 43.1 5.1 60 92-190 13-74 (266)
142 PRK15126 thiamin pyrimidine py 86.8 1.6 3.4E-05 41.4 6.2 66 303-368 155-239 (272)
143 PRK10976 putative hydrolase; P 86.4 1.6 3.6E-05 41.0 6.1 64 305-368 159-241 (266)
144 PF11019 DUF2608: Protein of u 86.4 1.1 2.4E-05 42.8 4.9 101 151-251 78-211 (252)
145 KOG3524 Predicted guanine nucl 86.3 0.74 1.6E-05 49.3 3.8 56 313-369 117-172 (850)
146 TIGR01680 Veg_Stor_Prot vegeta 86.1 2.9 6.3E-05 40.4 7.5 81 156-236 147-236 (275)
147 TIGR01482 SPP-subfamily Sucros 85.9 1.5 3.2E-05 40.0 5.3 31 161-191 22-53 (225)
148 COG0647 NagD Predicted sugar p 85.1 1.4 3E-05 42.6 4.8 48 157-206 27-79 (269)
149 TIGR00685 T6PP trehalose-phosp 85.0 0.78 1.7E-05 43.1 3.1 53 91-182 1-53 (244)
150 TIGR01452 PGP_euk phosphoglyco 85.0 1.3 2.8E-05 42.4 4.7 23 157-179 21-44 (279)
151 TIGR01457 HAD-SF-IIA-hyp2 HAD- 84.7 1.5 3.2E-05 41.4 4.9 14 95-108 3-16 (249)
152 KOG3120 Predicted haloacid deh 84.1 2.5 5.3E-05 39.8 5.8 50 153-204 83-134 (256)
153 COG4359 Uncharacterized conser 83.5 2.4 5.2E-05 38.8 5.3 41 153-193 72-113 (220)
154 PLN02151 trehalose-phosphatase 83.2 2.2 4.7E-05 42.9 5.5 63 87-188 92-154 (354)
155 TIGR01460 HAD-SF-IIA Haloacid 82.4 1.5 3.2E-05 41.1 3.8 33 157-189 17-54 (236)
156 TIGR01485 SPP_plant-cyano sucr 82.4 2.1 4.6E-05 40.1 4.8 16 93-108 1-16 (249)
157 PLN02423 phosphomannomutase 82.1 2.9 6.2E-05 39.5 5.6 18 91-108 5-22 (245)
158 TIGR01490 HAD-SF-IB-hyp1 HAD-s 82.0 2.4 5.1E-05 38.0 4.8 49 153-202 86-135 (202)
159 PLN03017 trehalose-phosphatase 81.7 2.8 6E-05 42.3 5.6 63 86-187 104-166 (366)
160 TIGR01548 HAD-SF-IA-hyp1 haloa 81.3 0.81 1.8E-05 41.2 1.5 15 95-109 2-16 (197)
161 KOG1929 Nucleotide excision re 81.2 1.2 2.7E-05 49.0 3.1 55 312-366 7-61 (811)
162 PLN02580 trehalose-phosphatase 80.7 3.3 7.2E-05 42.0 5.8 64 86-188 112-175 (384)
163 PRK12702 mannosyl-3-phosphogly 80.0 4.7 0.0001 39.5 6.3 35 160-194 24-59 (302)
164 PF00702 Hydrolase: haloacid d 79.4 3.4 7.3E-05 36.9 4.9 79 150-232 123-205 (215)
165 COG1877 OtsB Trehalose-6-phosp 79.1 3.8 8.2E-05 39.5 5.4 67 83-188 8-76 (266)
166 TIGR02244 HAD-IG-Ncltidse HAD 78.5 2.9 6.2E-05 41.8 4.5 53 150-203 180-240 (343)
167 PTZ00174 phosphomannomutase; P 78.2 5.1 0.00011 37.6 6.0 17 93-109 5-21 (247)
168 PRK14502 bifunctional mannosyl 77.6 5.3 0.00011 43.4 6.4 32 162-193 441-473 (694)
169 TIGR01993 Pyr-5-nucltdase pyri 77.4 1.2 2.5E-05 39.6 1.2 15 95-109 2-16 (184)
170 TIGR02726 phenyl_P_delta pheny 76.9 2.8 6.1E-05 37.5 3.6 77 167-248 48-124 (169)
171 PRK11587 putative phosphatase; 75.5 1.4 3E-05 40.4 1.3 16 94-109 4-19 (218)
172 PHA02597 30.2 hypothetical pro 74.0 1.8 4E-05 38.7 1.6 15 94-108 3-17 (197)
173 COG4502 5'(3')-deoxyribonucleo 74.0 5.3 0.00012 35.0 4.3 76 153-246 67-151 (180)
174 TIGR01511 ATPase-IB1_Cu copper 73.8 10 0.00022 40.4 7.4 76 152-235 403-479 (562)
175 PF06941 NT5C: 5' nucleotidase 73.6 1.8 3.9E-05 39.0 1.5 77 153-242 72-155 (191)
176 TIGR01454 AHBA_synth_RP 3-amin 73.2 1.3 2.7E-05 40.1 0.3 14 96-109 1-14 (205)
177 TIGR02253 CTE7 HAD superfamily 72.9 1.9 4E-05 39.2 1.4 17 94-110 3-19 (221)
178 TIGR02252 DREG-2 REG-2-like, H 72.8 2.3 4.9E-05 38.2 1.9 15 95-109 2-16 (203)
179 TIGR01549 HAD-SF-IA-v1 haloaci 72.3 1.5 3.3E-05 37.4 0.6 15 95-109 1-15 (154)
180 TIGR03351 PhnX-like phosphonat 71.8 2.2 4.8E-05 38.8 1.7 16 94-109 2-17 (220)
181 TIGR02009 PGMB-YQAB-SF beta-ph 71.0 2 4.3E-05 37.7 1.1 15 95-109 3-17 (185)
182 TIGR01990 bPGM beta-phosphoglu 70.5 1.9 4.2E-05 37.8 0.9 15 95-109 1-15 (185)
183 PF03767 Acid_phosphat_B: HAD 70.4 4 8.6E-05 38.3 3.1 37 155-191 116-153 (229)
184 PLN02770 haloacid dehalogenase 70.3 2 4.4E-05 40.3 1.1 16 94-109 23-38 (248)
185 PRK11590 hypothetical protein; 69.2 6.9 0.00015 35.8 4.3 39 153-191 94-134 (211)
186 TIGR01449 PGP_bact 2-phosphogl 69.0 1.8 3.9E-05 39.0 0.4 14 96-109 1-14 (213)
187 TIGR01493 HAD-SF-IA-v2 Haloaci 69.0 2.2 4.8E-05 37.2 1.0 14 96-109 2-15 (175)
188 PRK13478 phosphonoacetaldehyde 68.0 2.8 6E-05 39.7 1.5 15 94-108 5-19 (267)
189 TIGR01422 phosphonatase phosph 66.6 3.5 7.6E-05 38.6 1.8 16 94-109 3-18 (253)
190 TIGR01509 HAD-SF-IA-v3 haloaci 66.3 2.6 5.6E-05 36.7 0.9 15 95-109 1-15 (183)
191 PRK14501 putative bifunctional 66.3 9.1 0.0002 42.0 5.2 61 89-188 488-550 (726)
192 PF13419 HAD_2: Haloacid dehal 66.1 2.9 6.2E-05 35.6 1.1 14 96-109 1-14 (176)
193 TIGR01545 YfhB_g-proteo haloac 66.0 8.3 0.00018 35.5 4.2 37 153-189 93-131 (210)
194 PRK11590 hypothetical protein; 66.0 3.3 7.2E-05 37.8 1.5 16 92-107 5-20 (211)
195 PLN02382 probable sucrose-phos 65.9 3.2 7E-05 42.4 1.5 23 86-108 2-24 (413)
196 COG3769 Predicted hydrolase (H 65.8 18 0.0004 34.1 6.3 30 167-196 37-66 (274)
197 PRK10748 flavin mononucleotide 65.5 3.2 6.9E-05 38.7 1.3 16 94-109 11-26 (238)
198 KOG2481 Protein required for n 64.4 8 0.00017 40.4 4.0 48 312-361 325-382 (570)
199 TIGR01428 HAD_type_II 2-haloal 64.0 3.3 7.1E-05 37.0 1.1 15 95-109 3-17 (198)
200 PRK13222 phosphoglycolate phos 63.7 3.4 7.4E-05 37.4 1.2 16 94-109 7-22 (226)
201 TIGR02254 YjjG/YfnB HAD superf 63.6 3.5 7.6E-05 37.2 1.2 15 95-109 3-17 (224)
202 PLN02779 haloacid dehalogenase 63.5 4.3 9.2E-05 39.2 1.8 17 92-108 39-55 (286)
203 TIGR01512 ATPase-IB2_Cd heavy 63.5 9.4 0.0002 40.3 4.5 89 150-245 358-448 (536)
204 PRK14988 GMP/IMP nucleotidase; 63.1 3.8 8.3E-05 37.9 1.4 16 93-108 10-25 (224)
205 PF12710 HAD: haloacid dehalog 61.0 9 0.00019 33.6 3.3 41 154-194 85-130 (192)
206 TIGR02247 HAD-1A3-hyp Epoxide 60.8 4.9 0.00011 36.3 1.6 14 95-108 4-17 (211)
207 TIGR01491 HAD-SF-IB-PSPlk HAD- 60.7 4.5 9.8E-05 35.8 1.4 15 94-108 5-19 (201)
208 TIGR01525 ATPase-IB_hvy heavy 60.6 9.9 0.00022 40.2 4.1 79 150-235 380-460 (556)
209 PRK10826 2-deoxyglucose-6-phos 60.6 4.7 0.0001 36.8 1.5 18 92-109 6-23 (222)
210 PF08235 LNS2: LNS2 (Lipin/Ned 58.3 17 0.00036 32.3 4.5 37 154-190 27-64 (157)
211 PRK09449 dUMP phosphatase; Pro 58.2 4.7 0.0001 36.7 1.0 14 94-107 4-17 (224)
212 KOG0966 ATP-dependent DNA liga 55.1 17 0.00036 40.0 4.6 46 312-357 631-678 (881)
213 PRK06698 bifunctional 5'-methy 54.9 5.7 0.00012 41.0 1.1 16 94-109 242-257 (459)
214 KOG3085 Predicted hydrolase (H 48.2 15 0.00033 34.8 2.8 81 151-234 111-197 (237)
215 PLN03063 alpha,alpha-trehalose 48.0 31 0.00067 38.4 5.5 64 89-188 503-568 (797)
216 PF13240 zinc_ribbon_2: zinc-r 47.1 9.9 0.00021 22.6 0.8 19 37-55 4-23 (23)
217 TIGR02137 HSK-PSP phosphoserin 47.0 9.5 0.00021 35.0 1.1 12 96-107 4-15 (203)
218 PLN03064 alpha,alpha-trehalose 46.7 36 0.00078 38.6 5.8 73 88-190 586-660 (934)
219 cd02640 R3H_NRF R3H domain of 46.3 44 0.00096 24.7 4.4 46 301-347 2-48 (60)
220 PLN02205 alpha,alpha-trehalose 45.5 18 0.00039 40.6 3.2 59 89-188 592-652 (854)
221 PF05116 S6PP: Sucrose-6F-phos 44.9 12 0.00026 35.3 1.6 14 92-105 1-14 (247)
222 COG5163 NOP7 Protein required 43.0 17 0.00037 36.9 2.3 59 300-360 333-405 (591)
223 TIGR02471 sucr_syn_bact_C sucr 42.4 11 0.00024 34.8 0.9 12 96-107 2-13 (236)
224 COG1011 Predicted hydrolase (H 40.8 16 0.00035 33.0 1.6 18 92-109 3-20 (229)
225 PRK09456 ?-D-glucose-1-phospha 40.6 15 0.00031 33.0 1.3 14 95-108 2-15 (199)
226 KOG2134 Polynucleotide kinase 39.6 44 0.00096 34.0 4.6 21 90-110 72-92 (422)
227 TIGR01545 YfhB_g-proteo haloac 39.4 16 0.00034 33.6 1.4 18 93-110 5-22 (210)
228 PF13248 zf-ribbon_3: zinc-rib 39.2 15 0.00032 22.4 0.8 19 37-55 7-26 (26)
229 PF05822 UMPH-1: Pyrimidine 5' 36.9 43 0.00094 32.0 3.9 40 151-190 87-127 (246)
230 PF02358 Trehalose_PPase: Treh 35.4 37 0.0008 31.4 3.2 34 153-186 18-53 (235)
231 PRK03922 hypothetical protein; 34.8 52 0.0011 27.4 3.5 70 15-95 29-106 (113)
232 TIGR01490 HAD-SF-IB-hyp1 HAD-s 34.7 17 0.00037 32.3 0.8 14 96-109 2-15 (202)
233 PF06941 NT5C: 5' nucleotidase 34.3 23 0.00049 31.8 1.5 17 92-108 1-17 (191)
234 KOG1929 Nucleotide excision re 32.3 30 0.00064 38.5 2.2 69 300-368 89-158 (811)
235 COG1105 FruK Fructose-1-phosph 31.7 83 0.0018 31.1 5.0 50 301-350 114-168 (310)
236 cd06536 CIDE_N_ICAD CIDE_N dom 31.6 98 0.0021 24.4 4.4 18 91-108 40-57 (80)
237 PF11004 Kdo_hydroxy: 3-deoxy- 30.1 16 0.00036 35.2 -0.1 28 313-340 135-164 (281)
238 PF05864 Chordopox_RPO7: Chord 29.2 19 0.00041 26.5 0.1 17 43-59 2-18 (63)
239 COG1885 Uncharacterized protei 28.8 64 0.0014 26.7 3.1 49 47-96 51-107 (115)
240 cd02514 GT13_GLCNAC-TI GT13_GL 28.8 60 0.0013 32.4 3.6 40 151-190 6-52 (334)
241 cd01615 CIDE_N CIDE_N domain, 27.5 1.3E+02 0.0028 23.6 4.5 18 91-108 38-55 (78)
242 KOG1615 Phosphoserine phosphat 26.5 1.2E+02 0.0025 28.3 4.6 50 153-202 87-138 (227)
243 PLN02919 haloacid dehalogenase 26.1 35 0.00077 39.2 1.6 17 94-110 76-92 (1057)
244 PHA03082 DNA-dependent RNA pol 26.1 23 0.0005 26.1 0.1 17 43-59 2-18 (63)
245 cd02646 R3H_G-patch R3H domain 23.7 1.4E+02 0.0031 21.5 4.0 55 302-358 3-57 (58)
246 PF10235 Cript: Microtubule-as 23.5 33 0.00071 27.7 0.5 15 44-58 68-82 (90)
247 PF00702 Hydrolase: haloacid d 23.1 47 0.001 29.3 1.5 14 95-108 3-16 (215)
248 PF02017 CIDE-N: CIDE-N domain 22.7 1.4E+02 0.003 23.4 3.8 20 89-108 36-55 (78)
249 TIGR01658 EYA-cons_domain eyes 22.5 36 0.00078 32.6 0.7 12 94-105 3-14 (274)
250 PF11475 VP_N-CPKC: Virion pro 22.1 25 0.00054 22.2 -0.3 20 34-54 6-25 (32)
251 PLN02177 glycerol-3-phosphate 20.9 49 0.0011 34.8 1.4 36 155-193 111-147 (497)
252 COG1273 Ku-homolog [Replicatio 20.8 66 0.0014 31.1 2.0 49 35-83 37-87 (278)
No 1
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=100.00 E-value=3.1e-62 Score=503.89 Aligned_cols=327 Identities=37% Similarity=0.609 Sum_probs=290.4
Q ss_pred CCCCCCceeeccccccccccccccCCccceeecCCcccCHHHHHHHhhhhhhh-hhcCCceEEEEeCCCceeeeccCCCC
Q 044162 35 HTICPHATILNGMCVVCDKLMDDSYGLCFDYIEKGLRYSIDEISRLKKRNTKN-LLRMRKLHLVLDLDHTLLHSRLIGKL 113 (369)
Q Consensus 35 ~~~C~H~~~~~~~C~~Cg~~~~~~~~~~~~~~~~~l~vs~~~a~~~~~~~~~~-ll~~~Kl~LVLDLD~TLIhs~~~~~~ 113 (369)
.+.|.|+++++|||+.||++|+...+..+.|...+++++...+..++...... .+++++|.||+|||+||+|+...+.+
T Consensus 87 ~~~C~H~~v~~GlC~~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l 166 (635)
T KOG0323|consen 87 TSCCEHFTVFGGLCASCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDL 166 (635)
T ss_pred cCCccceeecccHHHHHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchh
Confidence 47899999999999999999999998889999999999999999998876654 46667789999999999999999999
Q ss_pred CchHHHHHHHHhhccCCccccccCCCceeEEEEc--CceEEEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhC
Q 044162 114 TSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG--DNVLLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLD 191 (369)
Q Consensus 114 ~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~--~~~~~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lD 191 (369)
.++++|++++...+ +.+.++++++.+ ..+||||+|||+++||++++++|||||||||+|.||..|+++||
T Consensus 167 ~e~~~~l~~~~~~~--------~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~liD 238 (635)
T KOG0323|consen 167 SETEKYLKEEAESV--------ESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLID 238 (635)
T ss_pred hhhhhhcccccccc--------cccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHhC
Confidence 99998887654422 237788988864 45999999999999999999999999999999999999999999
Q ss_pred CCCCcccceEEeeccccCccccccccc-CCCCCcEEEEeCCccccccCCCceEEeCcccccccccCCC------------
Q 044162 192 PDCKYFNSRIITREDFKQKERKYLDLV-LGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKKKND------------ 258 (369)
Q Consensus 192 p~~~~f~~Ri~srd~~~~~~~KdL~~l-~~~~~~vvIvDD~~~~w~~~~~N~I~I~~y~fF~~~~~~~------------ 258 (369)
|+|.||++||+||++......+||..+ +++.+|||||||+.+||..++.|+|+|.||.||.+.|+.+
T Consensus 239 P~~~lF~dRIisrde~~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~gd~nap~~~~~~~~~~ 318 (635)
T KOG0323|consen 239 PEGKYFGDRIISRDESPFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQGDINAPPPLHVLRNVA 318 (635)
T ss_pred CCCccccceEEEecCCCcccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeeecccCcccccCCcccccccchh
Confidence 999999999999999777666777654 5899999999999999999888999999999999999633
Q ss_pred ----------------------------------------------------------------CCcccccccCCcccch
Q 044162 259 ----------------------------------------------------------------CKSYSEQMSDESESDG 274 (369)
Q Consensus 259 ----------------------------------------------------------------~~s~~e~~~de~~~D~ 274 (369)
..|+.+...|+.+.|.
T Consensus 319 ~~~~~~~~k~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~D~ 398 (635)
T KOG0323|consen 319 CSVRGAFFKEFDPSLKSRISEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEENAPEARSGSYREKKSDESDEDG 398 (635)
T ss_pred cccccccccccCcccccccccccccccccccCcccccccccccCcccccccccccccccchhhcccccccccccccccch
Confidence 2345566678889999
Q ss_pred HHHHHHHHHHHHHHHhcCCC---CCCCCCCcHHHHHHHHHHhhhcCceEEecccCCCCCh----hHHHHHHhcCCEEEec
Q 044162 275 ALANILRALKAVHALYFDNP---GNHAAGRDVRSCLAKIRSRILMGCTILFGDDDFEELP----LTWSRAEEMGAICTLV 347 (369)
Q Consensus 275 ~L~~l~~~L~~ih~~ff~~~---~~~~~~~DVr~il~~~r~~VL~g~~ivFSg~~p~~~p----~lw~la~~~GA~v~~~ 347 (369)
+|.+++++|+.+|..||..+ +.....+|||.+|+++|+++++||.++|||++|.+.+ .+...+.+|||....+
T Consensus 399 ~L~~~~kvl~~vH~~ff~~~~~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~ 478 (635)
T KOG0323|consen 399 ELANLLKVLKPVHKGFFAKYDEVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPD 478 (635)
T ss_pred hHHHHhhhhcccchhhhhccccccccccCCChhhhhhhhhhHHhhccceeecccccCcCCcchhhhhhhhhcccceeccc
Confidence 99999999999999999975 3456689999999999999999999999999999643 6666799999999999
Q ss_pred cCCCceEEEecCCCcccccccC
Q 044162 348 TDASVTHVVSSNTQSETFEWAE 369 (369)
Q Consensus 348 i~~~vTHvVa~~~gT~K~~~a~ 369 (369)
++..|||+||++.||.|+.+|.
T Consensus 479 ~~~~~th~i~~~~gt~k~~~a~ 500 (635)
T KOG0323|consen 479 VSDKTTHLIAANAGTKKVYKAV 500 (635)
T ss_pred ccchhhhHHhhccCcceeeccc
Confidence 9999999999999999999884
No 2
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=5.5e-39 Score=283.76 Aligned_cols=155 Identities=45% Similarity=0.691 Sum_probs=133.9
Q ss_pred hhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh
Q 044162 88 LLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS 167 (369)
Q Consensus 88 ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls 167 (369)
|++++|++||||||||||||+..+..+..+.+..+. . .....++++++...+..+++++|||+.+||++++
T Consensus 1 ~~~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~------~---~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~ 71 (156)
T TIGR02250 1 LLREKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEE------P---NSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEAS 71 (156)
T ss_pred CCcCCceEEEEeCCCCcccccccCccchhhhccccc------C---CccccccceEEEcCCeEEEEEECCCHHHHHHHHH
Confidence 578999999999999999999987665444331110 0 0011346778877667899999999999999999
Q ss_pred cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccc-cCCCCCcEEEEeCCccccccCCCceEEeC
Q 044162 168 RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDL-VLGQENSIVIVDDTESVWGGRVENLITVG 246 (369)
Q Consensus 168 ~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~-l~~~~~~vvIvDD~~~~w~~~~~N~I~I~ 246 (369)
+.|+++|||++++.||++|++.|||.+.+|++|+++|++|...+.|||+. +++++++||||||++++|..|++|+|+|+
T Consensus 72 ~~yel~I~T~~~~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i~ 151 (156)
T TIGR02250 72 KLYEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESGSPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIE 151 (156)
T ss_pred hhcEEEEEeCCcHHHHHHHHHHhCcCCCeeccEEEEeccCCCCccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEeC
Confidence 99999999999999999999999999999999999999999889999954 57899999999999999999999999999
Q ss_pred ccccc
Q 044162 247 SYDFF 251 (369)
Q Consensus 247 ~y~fF 251 (369)
||.||
T Consensus 152 ~~~~f 156 (156)
T TIGR02250 152 PYNYF 156 (156)
T ss_pred CcccC
Confidence 99998
No 3
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=2.2e-35 Score=278.45 Aligned_cols=172 Identities=29% Similarity=0.406 Sum_probs=146.9
Q ss_pred hhhhcCCceEEEEeCCCceeeecc-CCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEc--CceEEEEeCccHHHH
Q 044162 86 KNLLRMRKLHLVLDLDHTLLHSRL-IGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG--DNVLLVKLRPFVRSF 162 (369)
Q Consensus 86 ~~ll~~~Kl~LVLDLD~TLIhs~~-~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~--~~~~~vklRPgl~eF 162 (369)
.++...+|.+|||||||||+||+. .+...++ .-.+.+.+. ...+||.+|||+++|
T Consensus 82 ~~~~~~~kk~lVLDLDeTLvHss~~~~~~~~~----------------------d~~~~v~~~~~~~~~yV~kRP~vdeF 139 (262)
T KOG1605|consen 82 LRLATVGRKTLVLDLDETLVHSSLNLKPIVNA----------------------DFTVPVEIDGHIHQVYVRKRPHVDEF 139 (262)
T ss_pred cccccCCCceEEEeCCCcccccccccCCCCCc----------------------ceeeeeeeCCcceEEEEEcCCCHHHH
Confidence 445588999999999999999995 2211110 011222222 348999999999999
Q ss_pred HHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEEeCCccccccCC
Q 044162 163 LEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIVDDTESVWGGRV 239 (369)
Q Consensus 163 L~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~ 239 (369)
|+.++++||+++||++.+.||.+|++.|||.+++|.+|+| |++|.. .|+|||..+++++++||||||+|.++..||
T Consensus 140 L~~~s~~~e~v~FTAs~~~Ya~~v~D~LD~~~~i~~~Rly-R~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p 218 (262)
T KOG1605|consen 140 LSRVSKWYELVLFTASLEVYADPLLDILDPDRKIISHRLY-RDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQP 218 (262)
T ss_pred HHHhHHHHHHHHHHhhhHHHHHHHHHHccCCCCeeeeeec-ccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCc
Confidence 9999999999999999999999999999998889999998 999975 589999999999999999999999999999
Q ss_pred CceEEeCcccccccccCCCCCcccccccCCcccchHHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHH
Q 044162 240 ENLITVGSYDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKI 310 (369)
Q Consensus 240 ~N~I~I~~y~fF~~~~~~~~~s~~e~~~de~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~~~ 310 (369)
+|+|+|++|. . +..|.+|+.|+++|+++.. .+|||++++..
T Consensus 219 ~NgIpI~sw~--~-----------------d~~D~eLL~LlpfLe~L~~-----------~~Dvr~~l~~~ 259 (262)
T KOG1605|consen 219 ENGIPIKSWF--D-----------------DPTDTELLKLLPFLEALAF-----------VDDVRPILARR 259 (262)
T ss_pred cCCCcccccc--c-----------------CCChHHHHHHHHHHHHhcc-----------cccHHHHHHHh
Confidence 9999999996 2 5779999999999999975 68999999864
No 4
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=6.6e-34 Score=252.84 Aligned_cols=154 Identities=30% Similarity=0.373 Sum_probs=131.0
Q ss_pred ceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEc--CceEEEEeCccHHHHHHHHhcCc
Q 044162 93 KLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG--DNVLLVKLRPFVRSFLEEASRLF 170 (369)
Q Consensus 93 Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~--~~~~~vklRPgl~eFL~~ls~~y 170 (369)
|++||||||||||||+..+... . ....+.+... ...+|+++|||+.+||+++++.|
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~-~---------------------~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~y 58 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKV-D---------------------ADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKWY 58 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCC-C---------------------CceEEEEEecCcEEEEEEEECCCHHHHHHHHHhcC
Confidence 6899999999999997754210 0 0111222211 23899999999999999999999
Q ss_pred cEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEEeCCccccccCCCceEEeCc
Q 044162 171 EISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGS 247 (369)
Q Consensus 171 Ei~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~~ 247 (369)
||+|||++++.||++|++.|||.+.+|..+++ |++|.. .+.|+|+.++++++++|||||++..|..+++|+|+|.+
T Consensus 59 ei~I~Ts~~~~yA~~il~~ldp~~~~f~~~l~-r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~ 137 (162)
T TIGR02251 59 ELVIFTASLEEYADPVLDILDRGGKVISRRLY-RESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKS 137 (162)
T ss_pred EEEEEcCCcHHHHHHHHHHHCcCCCEEeEEEE-ccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCC
Confidence 99999999999999999999999888987665 999863 47999999999999999999999999999999999999
Q ss_pred ccccccccCCCCCcccccccCCcccchHHHHHHHHHHHHHH
Q 044162 248 YDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVHA 288 (369)
Q Consensus 248 y~fF~~~~~~~~~s~~e~~~de~~~D~~L~~l~~~L~~ih~ 288 (369)
|. | +.+|.+|..|+++|+.|+.
T Consensus 138 f~-----~--------------~~~D~~L~~l~~~L~~l~~ 159 (162)
T TIGR02251 138 WF-----G--------------DPNDTELLNLIPFLEGLRF 159 (162)
T ss_pred CC-----C--------------CCCHHHHHHHHHHHHHHhc
Confidence 97 2 6799999999999999986
No 5
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=100.00 E-value=7.9e-33 Score=243.71 Aligned_cols=150 Identities=33% Similarity=0.420 Sum_probs=113.4
Q ss_pred eEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHhcCccEE
Q 044162 94 LHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLFEIS 173 (369)
Q Consensus 94 l~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls~~yEi~ 173 (369)
++|||||||||||+...+..+. + ..... ....+++++|||+++||+++++.|||+
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~------------------~------~~~~~-~~~~~~v~~RP~l~~FL~~l~~~~ev~ 55 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPY------------------D------FKIID-QRGGYYVKLRPGLDEFLEELSKHYEVV 55 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-------------------S------EEEET-EEEEEEEEE-TTHHHHHHHHHHHCEEE
T ss_pred CEEEEeCCCcEEEEeecCCCCc------------------c------cceec-cccceeEeeCchHHHHHHHHHHhceEE
Confidence 5899999999999997653210 0 00000 123789999999999999999999999
Q ss_pred EecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEEeCCccccccCCCceEEeCcccc
Q 044162 174 VCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDF 250 (369)
Q Consensus 174 I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~~y~f 250 (369)
|||++++.||++|++.|||++.+|.+ +++|++|.. .+.|||+.+++++++||||||++.+|..+++|+|+|++|.
T Consensus 56 i~T~~~~~ya~~v~~~ldp~~~~~~~-~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~- 133 (159)
T PF03031_consen 56 IWTSASEEYAEPVLDALDPNGKLFSR-RLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFF- 133 (159)
T ss_dssp EE-SS-HHHHHHHHHHHTTTTSSEEE-EEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----S-
T ss_pred EEEeehhhhhhHHHHhhhhhcccccc-ccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEEecccc-
Confidence 99999999999999999998889965 556998863 2579999999999999999999999998999999999996
Q ss_pred cccccCCCCCcccccccCCc-ccchHHHHHHHHHHHHHH
Q 044162 251 FKDKKKNDCKSYSEQMSDES-ESDGALANILRALKAVHA 288 (369)
Q Consensus 251 F~~~~~~~~~s~~e~~~de~-~~D~~L~~l~~~L~~ih~ 288 (369)
+ + .+|++|..|+++|++++.
T Consensus 134 ----~--------------~~~~D~~L~~l~~~L~~l~~ 154 (159)
T PF03031_consen 134 ----G--------------DTPNDRELLRLLPFLEELAK 154 (159)
T ss_dssp ----S--------------CHTT--HHHHHHHHHHHHHT
T ss_pred ----C--------------CCcchhHHHHHHHHHHHhCc
Confidence 1 3 689999999999999986
No 6
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.97 E-value=2.2e-30 Score=236.00 Aligned_cols=159 Identities=19% Similarity=0.226 Sum_probs=127.8
Q ss_pred hhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHH
Q 044162 87 NLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA 166 (369)
Q Consensus 87 ~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~l 166 (369)
+..+.+|.+|||||||||||+..... ..++.+|||+++||+.+
T Consensus 15 ~~~~~~kklLVLDLDeTLvh~~~~~~-------------------------------------~~~~~kRP~l~eFL~~~ 57 (195)
T TIGR02245 15 NPPREGKKLLVLDIDYTLFDHRSPAE-------------------------------------TGEELMRPYLHEFLTSA 57 (195)
T ss_pred CCCCCCCcEEEEeCCCceEcccccCC-------------------------------------CceEEeCCCHHHHHHHH
Confidence 34578899999999999999753210 35688999999999999
Q ss_pred hcCccEEEecCCcHHHHHHHHHHhCCCCC-cccceEEeeccccC---------c-ccccccccC------CCCCcEEEEe
Q 044162 167 SRLFEISVCTLGNREYATRAVKLLDPDCK-YFNSRIITREDFKQ---------K-ERKYLDLVL------GQENSIVIVD 229 (369)
Q Consensus 167 s~~yEi~I~T~g~~~YA~~i~~~lDp~~~-~f~~Ri~srd~~~~---------~-~~KdL~~l~------~~~~~vvIvD 229 (369)
++.|||+|||++++.||+.+++.|++.+. -+.-+.+ ++.|.. . ++|+|+.++ .+++++||||
T Consensus 58 ~~~feIvVwTAa~~~ya~~~l~~l~~~~~~~~~i~~~-ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVD 136 (195)
T TIGR02245 58 YEDYDIVIWSATSMKWIEIKMTELGVLTNPNYKITFL-LDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFD 136 (195)
T ss_pred HhCCEEEEEecCCHHHHHHHHHHhcccCCccceEEEE-eccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEe
Confidence 99999999999999999999999976432 1222233 455521 1 489999773 2789999999
Q ss_pred CCccccccCCCceEEeCcccccccccCCCCCcccccccCCcccchHHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHH
Q 044162 230 DTESVWGGRVENLITVGSYDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAK 309 (369)
Q Consensus 230 D~~~~w~~~~~N~I~I~~y~fF~~~~~~~~~s~~e~~~de~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~~ 309 (369)
|++.++..||+|+|+|+||. .... .+.+|.+|..|+++|+.|+. .+|||++...
T Consensus 137 d~p~~~~~~P~N~i~I~~f~-~~~~--------------~~~~D~eL~~L~~yL~~la~-----------~~Dvr~~~~~ 190 (195)
T TIGR02245 137 DLRRNFLMNPQNGLKIRPFK-KAHA--------------NRGTDQELLKLTQYLKTIAE-----------LEDFSSLDHK 190 (195)
T ss_pred CCHHHHhcCCCCccccCCcc-ccCC--------------CCcccHHHHHHHHHHHHHhc-----------Ccccchhhhc
Confidence 99999999999999999995 1111 25799999999999999986 7999998763
No 7
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.92 E-value=1.6e-25 Score=215.95 Aligned_cols=157 Identities=23% Similarity=0.309 Sum_probs=142.8
Q ss_pred cCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHhcC
Q 044162 90 RMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRL 169 (369)
Q Consensus 90 ~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls~~ 169 (369)
.+++++|||||.++|||..+.-. ..|.+++|||++.||..++++
T Consensus 186 ~Qp~yTLVleledvLVhpdws~~------------------------------------tGwRf~kRPgvD~FL~~~a~~ 229 (393)
T KOG2832|consen 186 EQPPYTLVLELEDVLVHPDWSYK------------------------------------TGWRFKKRPGVDYFLGHLAKY 229 (393)
T ss_pred cCCCceEEEEeeeeEeccchhhh------------------------------------cCceeccCchHHHHHHhhccc
Confidence 46899999999999999876320 168899999999999999999
Q ss_pred ccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEEeCCccccccCCCceEEeC
Q 044162 170 FEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVG 246 (369)
Q Consensus 170 yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~ 246 (369)
|||+|||+....||.++++.|||.| ++++|++ |+.+.. .++|||+.|+||+++||+||-++.....||+|.|.++
T Consensus 230 yEIVi~sse~gmt~~pl~d~lDP~g-~IsYkLf-r~~t~y~~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~ 307 (393)
T KOG2832|consen 230 YEIVVYSSEQGMTVFPLLDALDPKG-YISYKLF-RGATKYEEGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLE 307 (393)
T ss_pred ceEEEEecCCccchhhhHhhcCCcc-eEEEEEe-cCcccccCccchhhhhhhccccceeEEEEccccccccCcccccccC
Confidence 9999999999999999999999996 7889999 888765 4899999999999999999999999999999999999
Q ss_pred cccccccccCCCCCcccccccCCcccchHHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHH
Q 044162 247 SYDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRS 312 (369)
Q Consensus 247 ~y~fF~~~~~~~~~s~~e~~~de~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~~~r~ 312 (369)
||. | +++|..|.+|+++|+.||. .+..|||++|+.+.+
T Consensus 308 ~W~-----G--------------n~dDt~L~dL~~FL~~ia~---------~~~eDvR~vL~~y~~ 345 (393)
T KOG2832|consen 308 PWS-----G--------------NDDDTSLFDLLAFLEYIAQ---------QQVEDVRPVLQSYSQ 345 (393)
T ss_pred cCC-----C--------------CcccchhhhHHHHHHHHHH---------ccHHHHHHHHHHhcc
Confidence 997 3 7888999999999999997 568999999998765
No 8
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.91 E-value=5.8e-24 Score=186.00 Aligned_cols=140 Identities=34% Similarity=0.400 Sum_probs=113.4
Q ss_pred CceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEc--CceEEEEeCccHHHHHHHHhcC
Q 044162 92 RKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG--DNVLLVKLRPFVRSFLEEASRL 169 (369)
Q Consensus 92 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~--~~~~~vklRPgl~eFL~~ls~~ 169 (369)
||++|||||||||||+...+.. ++. . .......... ...+++++|||+.+||+++++.
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~-~~~--------------~-----~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~ 60 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFK-EWT--------------N-----RDFIVPVLIDGHPHGVYVKKRPGVDEFLKRASEL 60 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCC-CCC--------------c-----cceEEEEEeCCceEEEEEEECCCHHHHHHHHHhc
Confidence 6999999999999999753321 110 0 1111222111 3378999999999999999999
Q ss_pred ccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEEeCCccccccCCCceEEeC
Q 044162 170 FEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVG 246 (369)
Q Consensus 170 yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~ 246 (369)
|+++|||++.+.||+.+++.+|+.+.+| +++++++++.. .+.|+|++++.+++.+|+|||++..|..++.|+|.|+
T Consensus 61 ~~l~I~Ts~~~~~~~~il~~l~~~~~~f-~~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~ 139 (148)
T smart00577 61 FELVVFTAGLRMYADPVLDLLDPKKYFG-YRRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIK 139 (148)
T ss_pred cEEEEEeCCcHHHHHHHHHHhCcCCCEe-eeEEECccccccCCeEeecHHHcCCChhcEEEEECCHHHhhcCccCEEEec
Confidence 9999999999999999999999976444 67899998864 3788999999999999999999999999999999999
Q ss_pred cccccc
Q 044162 247 SYDFFK 252 (369)
Q Consensus 247 ~y~fF~ 252 (369)
||.++.
T Consensus 140 ~f~~~~ 145 (148)
T smart00577 140 PWFGDP 145 (148)
T ss_pred CcCCCC
Confidence 998443
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.81 E-value=2.9e-20 Score=183.95 Aligned_cols=170 Identities=27% Similarity=0.335 Sum_probs=140.6
Q ss_pred hcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHhc
Q 044162 89 LRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASR 168 (369)
Q Consensus 89 l~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls~ 168 (369)
-...+.+|++|||+||+|+..... ..++ |.... + ...+ ...+||..|||+.+||..+++
T Consensus 208 ~~~~~k~L~l~lde~l~~S~~~~~--~~~d-----------f~~~~-e-~~~~------~~~~~v~kRp~l~~fl~~ls~ 266 (390)
T COG5190 208 STSPKKTLVLDLDETLVHSSFRYI--TLLD-----------FLVKV-E-ISLL------QHLVYVSKRPELDYFLGKLSK 266 (390)
T ss_pred CCCCccccccCCCccceeeccccc--cccc-----------hhhcc-c-cccc------eeEEEEcCChHHHHHHhhhhh
Confidence 456889999999999999987532 1111 11100 0 0001 237999999999999999999
Q ss_pred CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEEeCCccccccCCCceEEe
Q 044162 169 LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIVDDTESVWGGRVENLITV 245 (369)
Q Consensus 169 ~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I 245 (369)
+|++++||+..+.||++|+++||+.+ .|++|+| |.+|.. .|+|||..++++...|+|||++|..|..++.|.|+|
T Consensus 267 ~~~l~~ft~s~~~y~~~v~d~l~~~k-~~~~~lf-r~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i~i 344 (390)
T COG5190 267 IHELVYFTASVKRYADPVLDILDSDK-VFSHRLF-RESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAIPI 344 (390)
T ss_pred hEEEEEEecchhhhcchHHHhccccc-eeehhhh-cccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccceecc
Confidence 99999999999999999999999997 8888888 888864 389999999999999999999999999999999999
Q ss_pred CcccccccccCCCCCcccccccCCcccchHHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHH
Q 044162 246 GSYDFFKDKKKNDCKSYSEQMSDESESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAK 309 (369)
Q Consensus 246 ~~y~fF~~~~~~~~~s~~e~~~de~~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~~ 309 (369)
++|. +++.|.+|.+++++|..|.. .+..||+.++..
T Consensus 345 ~~W~-------------------~d~~d~el~~ll~~le~L~~---------~~~~d~~~~l~~ 380 (390)
T COG5190 345 EKWI-------------------SDEHDDELLNLLPFLEDLPD---------RDLKDVSSILQS 380 (390)
T ss_pred Cccc-------------------ccccchhhhhhccccccccc---------ccchhhhhhhhh
Confidence 9997 25689999999999998875 357889888764
No 10
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.79 E-value=1.5e-19 Score=178.92 Aligned_cols=273 Identities=23% Similarity=0.307 Sum_probs=202.1
Q ss_pred ccCHHHHHHHhhhhhhhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCce
Q 044162 71 RYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNV 150 (369)
Q Consensus 71 ~vs~~~a~~~~~~~~~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~ 150 (369)
+++..+|.+.+.+...+|-.++++.||+|+|+|.+||+.++..+.+.++.... .+..+.. . .+.....+
T Consensus 4 ~i~~~~~~~~~~~~~~~l~q~~~~~l~~~~~~~~~h~~~~~~~p~~~~~~~~~--~~~~~~~-~--------~~~~~~~~ 72 (390)
T COG5190 4 NISHEEASRTKKESMEALRQDKKLILVVDLDQTIIHTTVDPNDPNNVNQSLER--TLKSVND-R--------DPVQEKCA 72 (390)
T ss_pred eeEeeehhhhhhhHHHHhhcCcccccccccccceecccccCCCCCchhhhhhc--cccchhc-c--------cccccccc
Confidence 67888999999999999999999999999999999999988545444421110 0110110 0 01111348
Q ss_pred EEEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCccccccccc-CCCCCcEEEEe
Q 044162 151 LLVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLV-LGQENSIVIVD 229 (369)
Q Consensus 151 ~~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l-~~~~~~vvIvD 229 (369)
|++|.||++..|+...++.||+++||+|++.||..+++++||.|++|.+|+.+++......+|.++++ +.+.++++++|
T Consensus 73 ~~~k~~~~l~~~~~~i~~~~e~~~~~~~~~~~~~~~~~i~d~~g~~~~d~~~~~~~~~~~~~~s~~~l~p~~~n~~vi~~ 152 (390)
T COG5190 73 YYVKARPKLFPFLTKISPLYELHIYTMGTRAYAERIAKIIDPTGKLFNDRILSRDESGSLSQKSLSRLFPKDQNMVVIID 152 (390)
T ss_pred ceeeecccccchhhhhchhcceeeEeeccccchhhhhhcccccccccccccccccccccchhhhhhhcCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999888888999975 58999999999
Q ss_pred CCcccc---ccCCCceEEeCcccccccccCC--------------C----CCccccc-----------------------
Q 044162 230 DTESVW---GGRVENLITVGSYDFFKDKKKN--------------D----CKSYSEQ----------------------- 265 (369)
Q Consensus 230 D~~~~w---~~~~~N~I~I~~y~fF~~~~~~--------------~----~~s~~e~----------------------- 265 (369)
|++++| .. -.|.+...++..+...-++ + ...+...
T Consensus 153 d~~~~~~~~d~-~~~~v~~~~~~~~~~~~~i~d~~~~~~~~~r~~~~~~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~~ 231 (390)
T COG5190 153 DRGDVWGVGDM-NSNFVAKSPFSKYESDKDIVDLPRLERKLSREAGIDTLEPPVSKSTSPKKTLVLDLDETLVHSSFRYI 231 (390)
T ss_pred cccccCCccch-hhhhhcccccccccccccccCcccccchhhhhcccccccchhhcCCCCccccccCCCccceeeccccc
Confidence 999999 44 3678888885433332220 0 0000000
Q ss_pred -------ccCCc--------ccchHHHHHHHHHHHHHHHhcCCCCCCCCCCcHHHHHHHHHHhhhcCceEEecccCCCCC
Q 044162 266 -------MSDES--------ESDGALANILRALKAVHALYFDNPGNHAAGRDVRSCLAKIRSRILMGCTILFGDDDFEEL 330 (369)
Q Consensus 266 -------~~de~--------~~D~~L~~l~~~L~~ih~~ff~~~~~~~~~~DVr~il~~~r~~VL~g~~ivFSg~~p~~~ 330 (369)
+.+.. ..|.+|..++..|.++|.-+|...........|..+|...+ ++++|.+.++++++.+.
T Consensus 232 ~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k--~~~~~lfr~sc~~~~G~ 309 (390)
T COG5190 232 TLLDFLVKVEISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYADPVLDILDSDK--VFSHRLFRESCVSYLGV 309 (390)
T ss_pred cccchhhccccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhcchHHHhccccc--eeehhhhcccceeccCc
Confidence 01112 57899999999999999877766433344556999999988 99999999999999874
Q ss_pred hhHHHHHHhcCCEEEeccCCCceEEEecCCCcccc
Q 044162 331 PLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETF 365 (369)
Q Consensus 331 p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~ 365 (369)
.+.-++.-. .+=.-||.|+.++-|.+.
T Consensus 310 -~ikDis~i~-------r~l~~viiId~~p~SY~~ 336 (390)
T COG5190 310 -YIKDISKIG-------RSLDKVIIIDNSPASYEF 336 (390)
T ss_pred -hhhhHHhhc-------cCCCceEEeeCChhhhhh
Confidence 222222211 333568888887766543
No 11
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=98.76 E-value=6.5e-09 Score=77.64 Aligned_cols=52 Identities=17% Similarity=0.181 Sum_probs=43.6
Q ss_pred ceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCcccccccC
Q 044162 318 CTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE 369 (369)
Q Consensus 318 ~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a~ 369 (369)
|.|.|||+.|.+...++++++++||++..+++..+|||||.+..++|++.|+
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~ 52 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAK 52 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHH
Confidence 5789999999888899999999999999999999999999999999999884
No 12
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=98.24 E-value=1e-06 Score=67.36 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=48.7
Q ss_pred HHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCC--Cccccccc
Q 044162 311 RSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNT--QSETFEWA 368 (369)
Q Consensus 311 r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~--gT~K~~~a 368 (369)
+..+|+||.+.|++.-+..+..++++++++||++..++++.+||+|+.+. .+.|...|
T Consensus 2 ~~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~ 61 (78)
T PF00533_consen 2 KPKIFEGCTFCISGFDSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAA 61 (78)
T ss_dssp STTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHH
T ss_pred CCCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHH
Confidence 46799999999965554445589999999999999999999999999987 77776654
No 13
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.10 E-value=2.6e-06 Score=72.70 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=58.7
Q ss_pred EeCccHHHHHHHHh-cCccEEEecCC-cHHHHHHHHHHhCC------CCCcccceEEeeccccC--cccccccccC--CC
Q 044162 154 KLRPFVRSFLEEAS-RLFEISVCTLG-NREYATRAVKLLDP------DCKYFNSRIITREDFKQ--KERKYLDLVL--GQ 221 (369)
Q Consensus 154 klRPgl~eFL~~ls-~~yEi~I~T~g-~~~YA~~i~~~lDp------~~~~f~~Ri~srd~~~~--~~~KdL~~l~--~~ 221 (369)
++.||+.++|+.+. +.+.++|.|++ .+.|+..+++...+ -..+|.. +++.++... .+.+-++.++ ..
T Consensus 29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~~~~~i~~l~~~f~~-~~~~~~~pkp~~~~~a~~~lg~~~~ 107 (128)
T TIGR01681 29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFEDFGIIFPLAEYFDP-LTIGYWLPKSPRLVEIALKLNGVLK 107 (128)
T ss_pred HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhccccccchhhHhhhhh-hhhcCCCcHHHHHHHHHHHhcCCCC
Confidence 57899999999996 68999999999 89999999988762 1235543 332322211 2445566678 78
Q ss_pred CCcEEEEeCCccc
Q 044162 222 ENSIVIVDDTESV 234 (369)
Q Consensus 222 ~~~vvIvDD~~~~ 234 (369)
.+.+++|||++..
T Consensus 108 p~~~l~igDs~~n 120 (128)
T TIGR01681 108 PKSILFVDDRPDN 120 (128)
T ss_pred cceEEEECCCHhH
Confidence 9999999999753
No 14
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=98.00 E-value=6.8e-06 Score=78.57 Aligned_cols=92 Identities=17% Similarity=0.257 Sum_probs=72.0
Q ss_pred EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCc
Q 044162 152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENS 224 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~ 224 (369)
.+.+.||+.++|+.+. ..|.++|-|++++.++..+++.++-.. ||. .+++.++... .+.+-+++++...+.
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~-~Fd-~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~ 184 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG-FFS-VVLAAEDVYRGKPDPEMFMYAAERLGFIPER 184 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh-hCc-EEEecccCCCCCCCHHHHHHHHHHhCCChHH
Confidence 3678999999999998 679999999999999999999988664 785 4777776542 145566778888899
Q ss_pred EEEEeCCccccccCCCceEEe
Q 044162 225 IVIVDDTESVWGGRVENLITV 245 (369)
Q Consensus 225 vvIvDD~~~~w~~~~~N~I~I 245 (369)
+++|+|+..-.......|+.+
T Consensus 185 ~l~IgDs~~Di~aA~~aG~~~ 205 (260)
T PLN03243 185 CIVFGNSNSSVEAAHDGCMKC 205 (260)
T ss_pred eEEEcCCHHHHHHHHHcCCEE
Confidence 999999986554444555543
No 15
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=97.95 E-value=2.4e-05 Score=75.65 Aligned_cols=88 Identities=24% Similarity=0.340 Sum_probs=66.7
Q ss_pred CHHHHHHHhhhhhhhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEE
Q 044162 73 SIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLL 152 (369)
Q Consensus 73 s~~~a~~~~~~~~~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~ 152 (369)
+..|...++. ..+.-.....+|+|||||||.... -
T Consensus 109 ~~~~v~~l~~---~~~~~~~~kvIvFDLDgTLi~~~~------------------------------------------~ 143 (301)
T TIGR01684 109 ELEEIYNLNL---PSKVFEPPHVVVFDLDSTLITDEE------------------------------------------P 143 (301)
T ss_pred cHhhhhhccc---cccccccceEEEEecCCCCcCCCC------------------------------------------c
Confidence 3344444433 335556777999999999997532 1
Q ss_pred EEeC-ccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccc
Q 044162 153 VKLR-PFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDF 207 (369)
Q Consensus 153 vklR-Pgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~ 207 (369)
+.+| ||+.+.|+++.+ .+.++|+|++.+.+|..+++.++..+ +| +.|++.++.
T Consensus 144 v~irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~-YF-dvIIs~Gdv 198 (301)
T TIGR01684 144 VRIRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDR-YF-DIIISGGHK 198 (301)
T ss_pred cccCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCc-cc-CEEEECCcc
Confidence 5568 999999999985 58999999999999999999999985 77 456655543
No 16
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.95 E-value=1.5e-05 Score=71.78 Aligned_cols=96 Identities=15% Similarity=0.045 Sum_probs=68.7
Q ss_pred eEEEEeCccHHHHHHHHh-cCccEEEecCC-cHHHHHHHHHHhCCC--C------CcccceEEeeccccC-cc----ccc
Q 044162 150 VLLVKLRPFVRSFLEEAS-RLFEISVCTLG-NREYATRAVKLLDPD--C------KYFNSRIITREDFKQ-KE----RKY 214 (369)
Q Consensus 150 ~~~vklRPgl~eFL~~ls-~~yEi~I~T~g-~~~YA~~i~~~lDp~--~------~~f~~Ri~srd~~~~-~~----~Kd 214 (369)
..-+.++||+.++|+.+. +.+.+.|-|++ .+.++..+++.++-. | .+|.. +++.++... .. .+.
T Consensus 41 ~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~~~~~~~~~~~~Fd~-iv~~~~~~~~kp~~~i~~~ 119 (174)
T TIGR01685 41 GTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEITYAGKTVPMHSLFDD-RIEIYKPNKAKQLEMILQK 119 (174)
T ss_pred CCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcCCCCCcccHHHhcee-eeeccCCchHHHHHHHHHH
Confidence 346788999999999997 77999999988 999999999998854 2 47754 444444221 11 111
Q ss_pred ccc-c--CCCCCcEEEEeCCccccccCCCceEEeC
Q 044162 215 LDL-V--LGQENSIVIVDDTESVWGGRVENLITVG 246 (369)
Q Consensus 215 L~~-l--~~~~~~vvIvDD~~~~w~~~~~N~I~I~ 246 (369)
+.. + +-+.+.+++|||++.-......+++.+-
T Consensus 120 ~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i 154 (174)
T TIGR01685 120 VNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSC 154 (174)
T ss_pred hhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEE
Confidence 211 1 3678999999999987766566776653
No 17
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=97.94 E-value=1.4e-05 Score=65.85 Aligned_cols=101 Identities=24% Similarity=0.233 Sum_probs=69.0
Q ss_pred EEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHhc-CccEE
Q 044162 95 HLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASR-LFEIS 173 (369)
Q Consensus 95 ~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls~-~yEi~ 173 (369)
++|||+|+||+........ .....++|++.++|+.+.+ .+.++
T Consensus 1 ~~vfD~D~tl~~~~~~~~~------------------------------------~~~~~~~~~~~~~l~~l~~~g~~i~ 44 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE------------------------------------IEELELYPGVKEALKELKEKGIKLA 44 (139)
T ss_pred CeEEccCCceEccCccccc------------------------------------cccCCcCcCHHHHHHHHHHCCCeEE
Confidence 4799999999987543210 2336789999999999986 49999
Q ss_pred EecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc----------------------ccccccccCCCCCcEEEEeCC
Q 044162 174 VCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK----------------------ERKYLDLVLGQENSIVIVDDT 231 (369)
Q Consensus 174 I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~----------------------~~KdL~~l~~~~~~vvIvDD~ 231 (369)
|.|++.+.++..+++.+.-.. +| ..+++.+..... +..-++.+....+.++.+||+
T Consensus 45 ivS~~~~~~~~~~~~~~~~~~-~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~ 122 (139)
T cd01427 45 LATNKSRREVLELLEELGLDD-YF-DPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDS 122 (139)
T ss_pred EEeCchHHHHHHHHHHcCCch-hh-hheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCCChhhEEEeCCC
Confidence 999999999999999876542 33 334433322210 011122334457889999998
Q ss_pred cc
Q 044162 232 ES 233 (369)
Q Consensus 232 ~~ 233 (369)
..
T Consensus 123 ~~ 124 (139)
T cd01427 123 LN 124 (139)
T ss_pred HH
Confidence 73
No 18
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=97.90 E-value=5.1e-05 Score=73.50 Aligned_cols=78 Identities=29% Similarity=0.399 Sum_probs=62.6
Q ss_pred hhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeC-ccHHHHHH
Q 044162 86 KNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLR-PFVRSFLE 164 (369)
Q Consensus 86 ~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklR-Pgl~eFL~ 164 (369)
..+....+..+|+||||||+..... +.+| |++.+.|+
T Consensus 121 ~~~~~~~~~~i~~D~D~TL~~~~~~------------------------------------------v~irdp~V~EtL~ 158 (303)
T PHA03398 121 ESLVWEIPHVIVFDLDSTLITDEEP------------------------------------------VRIRDPFVYDSLD 158 (303)
T ss_pred ceeEeeeccEEEEecCCCccCCCCc------------------------------------------cccCChhHHHHHH
Confidence 3445677789999999999976321 5578 99999999
Q ss_pred HHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccc
Q 044162 165 EASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDF 207 (369)
Q Consensus 165 ~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~ 207 (369)
++.+ .+.+.|+|+|.++++..+++.++.. .+|. -+++.++.
T Consensus 159 eLkekGikLaIvTNg~Re~v~~~Le~lgL~-~yFD-vII~~g~i 200 (303)
T PHA03398 159 ELKERGCVLVLWSYGNREHVVHSLKETKLE-GYFD-IIICGGRK 200 (303)
T ss_pred HHHHCCCEEEEEcCCChHHHHHHHHHcCCC-cccc-EEEECCCc
Confidence 9985 6999999999999999999999987 4773 45555543
No 19
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.90 E-value=1.4e-05 Score=73.20 Aligned_cols=92 Identities=20% Similarity=0.222 Sum_probs=70.5
Q ss_pred EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162 152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS 224 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~ 224 (369)
.+++.||+.++|+.+. +.+.+.|.|++.+.++..+++.++-. .||. .+++.++.... +.+-++.++.+.+.
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~-~~f~-~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 157 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLD-EFFD-VVITLDDVEHAKPDPEPVLKALELLGAKPEE 157 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh-hcee-EEEecCcCCCCCCCcHHHHHHHHHcCCCHHH
Confidence 4678899999999997 57999999999999999999999877 4784 57776665431 33445566777899
Q ss_pred EEEEeCCccccccCCCceEEe
Q 044162 225 IVIVDDTESVWGGRVENLITV 245 (369)
Q Consensus 225 vvIvDD~~~~w~~~~~N~I~I 245 (369)
+++|+|++.-......++++.
T Consensus 158 ~~~iGDs~~Di~aa~~aG~~~ 178 (214)
T PRK13288 158 ALMVGDNHHDILAGKNAGTKT 178 (214)
T ss_pred EEEECCCHHHHHHHHHCCCeE
Confidence 999999986554444555543
No 20
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.87 E-value=1.6e-05 Score=79.87 Aligned_cols=90 Identities=11% Similarity=0.122 Sum_probs=70.7
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCcE
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENSI 225 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~v 225 (369)
+.+.||+.+||+.+. ..+.+.|-|++.+.+++.+++.++-. .||. .+++.++... .+.+-++.++...+.+
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~-~yFd-~Iv~sddv~~~KP~Peifl~A~~~lgl~Peec 292 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIR-GFFS-VIVAAEDVYRGKPDPEMFIYAAQLLNFIPERC 292 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCH-HHce-EEEecCcCCCCCCCHHHHHHHHHHcCCCcccE
Confidence 467899999999996 67999999999999999999999876 4885 5887777643 1445566778889999
Q ss_pred EEEeCCccccccCCCceEE
Q 044162 226 VIVDDTESVWGGRVENLIT 244 (369)
Q Consensus 226 vIvDD~~~~w~~~~~N~I~ 244 (369)
|+|+|+..-.......++.
T Consensus 293 l~IGDS~~DIeAAk~AGm~ 311 (381)
T PLN02575 293 IVFGNSNQTVEAAHDARMK 311 (381)
T ss_pred EEEcCCHHHHHHHHHcCCE
Confidence 9999998666443444443
No 21
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=97.84 E-value=2.8e-05 Score=58.43 Aligned_cols=53 Identities=15% Similarity=0.178 Sum_probs=43.8
Q ss_pred hhhcCceEEecccC-CCCChhHHHHHHhcCCEEEeccCC-CceEEEecCCCcccc
Q 044162 313 RILMGCTILFGDDD-FEELPLTWSRAEEMGAICTLVTDA-SVTHVVSSNTQSETF 365 (369)
Q Consensus 313 ~VL~g~~ivFSg~~-p~~~p~lw~la~~~GA~v~~~i~~-~vTHvVa~~~gT~K~ 365 (369)
.+|+|+.++|+|-. +.....++++++++||++...+++ .+||+|+.+....+.
T Consensus 1 ~~f~g~~~~~~g~~~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~ 55 (80)
T smart00292 1 KLFKGKVFVITGKFDKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKL 55 (80)
T ss_pred CccCCeEEEEeCCCCCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccH
Confidence 37899999999922 223349999999999999999999 999999998777653
No 22
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=97.82 E-value=1.3e-05 Score=73.86 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=69.8
Q ss_pred EEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCcE
Q 044162 152 LVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENSI 225 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~v 225 (369)
...+.||+.++|+.+. +.+.|.|++++.+++.+++..+-.. +|...+++.++... .+.+-++.++...+.+
T Consensus 86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~~-~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~ 162 (221)
T PRK10563 86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGMLH-YFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENC 162 (221)
T ss_pred cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChHH-hCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence 4677899999999994 8999999999999999999887764 77555776655432 1344456677788899
Q ss_pred EEEeCCccccccCCCceEEeC
Q 044162 226 VIVDDTESVWGGRVENLITVG 246 (369)
Q Consensus 226 vIvDD~~~~w~~~~~N~I~I~ 246 (369)
|+|+|++.-.......|+++-
T Consensus 163 l~igDs~~di~aA~~aG~~~i 183 (221)
T PRK10563 163 ILVDDSSAGAQSGIAAGMEVF 183 (221)
T ss_pred EEEeCcHhhHHHHHHCCCEEE
Confidence 999999877655455665553
No 23
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.81 E-value=2.1e-05 Score=75.69 Aligned_cols=91 Identities=11% Similarity=0.066 Sum_probs=65.0
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---cccccccccCCCCCcEEEE
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---KERKYLDLVLGQENSIVIV 228 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~~~KdL~~l~~~~~~vvIv 228 (369)
+.+-||+.++|+.+. +.+.+.|.|++.+.++..+++.++-. .+|. .+++.++... .+.+-++.++.+.+.+++|
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~-~~F~-~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~I 218 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLR-SLFS-VVQAGTPILSKRRALSQLVAREGWQPAAVMYV 218 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh-hheE-EEEecCCCCCCHHHHHHHHHHhCcChhHEEEE
Confidence 567899999999997 67899999999999999999999876 4785 4555444221 1222334456677899999
Q ss_pred eCCccccccCCCceEEe
Q 044162 229 DDTESVWGGRVENLITV 245 (369)
Q Consensus 229 DD~~~~w~~~~~N~I~I 245 (369)
+|++.-.......++..
T Consensus 219 GDs~~Di~aA~~AG~~~ 235 (273)
T PRK13225 219 GDETRDVEAARQVGLIA 235 (273)
T ss_pred CCCHHHHHHHHHCCCeE
Confidence 99985443333445543
No 24
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=97.81 E-value=1.8e-05 Score=70.80 Aligned_cols=89 Identities=15% Similarity=0.156 Sum_probs=66.6
Q ss_pred EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcEE
Q 044162 153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSIV 226 (369)
Q Consensus 153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~vv 226 (369)
+.+-|++ +.|+.+.+.+.+.|-|++.+.+++.+++.++-.+ ||. .+++.++.... +..-+++++.+.+.+|
T Consensus 87 ~~~~~~~-e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~-~fd-~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l 163 (188)
T PRK10725 87 VEPLPLI-EVVKAWHGRRPMAVGTGSESAIAEALLAHLGLRR-YFD-AVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCV 163 (188)
T ss_pred CCCccHH-HHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcHh-Hce-EEEehhhccCCCCChHHHHHHHHHcCCCHHHeE
Confidence 4456874 8999998779999999999999999999998764 785 68877775431 3344556677788999
Q ss_pred EEeCCccccccCCCceEE
Q 044162 227 IVDDTESVWGGRVENLIT 244 (369)
Q Consensus 227 IvDD~~~~w~~~~~N~I~ 244 (369)
+|+|++.-......+|++
T Consensus 164 ~igDs~~di~aA~~aG~~ 181 (188)
T PRK10725 164 VFEDADFGIQAARAAGMD 181 (188)
T ss_pred EEeccHhhHHHHHHCCCE
Confidence 999997666544444443
No 25
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=97.79 E-value=4.5e-05 Score=71.08 Aligned_cols=91 Identities=12% Similarity=-0.046 Sum_probs=68.2
Q ss_pred EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162 152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS 224 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~ 224 (369)
.+.+.||+.++|+.+. +.+.+.|-|++...++..+++.++-.. +|. .+++.++.... +.+-++.++.+.+.
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~-~f~-~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~ 170 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWEQ-RCA-VLIGGDTLAERKPHPLPLLVAAERIGVAPTD 170 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCchh-ccc-EEEecCcCCCCCCCHHHHHHHHHHhCCChhh
Confidence 4688999999999997 568999999999999999999887664 674 46665554321 34555667788899
Q ss_pred EEEEeCCccccccCCCceEE
Q 044162 225 IVIVDDTESVWGGRVENLIT 244 (369)
Q Consensus 225 vvIvDD~~~~w~~~~~N~I~ 244 (369)
+++|+|++.-.......|+.
T Consensus 171 ~l~IGDs~~Di~aA~~aG~~ 190 (229)
T PRK13226 171 CVYVGDDERDILAARAAGMP 190 (229)
T ss_pred EEEeCCCHHHHHHHHHCCCc
Confidence 99999998655433344443
No 26
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=97.78 E-value=3.7e-05 Score=56.41 Aligned_cols=48 Identities=21% Similarity=0.176 Sum_probs=42.0
Q ss_pred CceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEecCCCccc
Q 044162 317 GCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSET 364 (369)
Q Consensus 317 g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K 364 (369)
||.++|+|..+. ....+.++++++||++..++++.+||+|+.+..+.+
T Consensus 1 ~~~~~i~g~~~~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~ 49 (72)
T cd00027 1 GLTFVITGDLPSEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPK 49 (72)
T ss_pred CCEEEEEecCCCcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCch
Confidence 689999999853 345999999999999999999999999999887765
No 27
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=97.74 E-value=4.9e-05 Score=64.36 Aligned_cols=75 Identities=16% Similarity=0.058 Sum_probs=53.9
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCc--------HHHHHHHHHHhCCCCCcccceEEeeccccC----ccccccccc-
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGN--------REYATRAVKLLDPDCKYFNSRIITREDFKQ----KERKYLDLV- 218 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~--------~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~----~~~KdL~~l- 218 (369)
..+.||+.++|+.+. +.+.++|.|++. ..++..+++.++-. ++ .+++...... .+.+-++.+
T Consensus 24 ~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~--~~--~~~~~~~~~KP~~~~~~~~~~~~~ 99 (132)
T TIGR01662 24 RILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP--ID--VLYACPHCRKPKPGMFLEALKRFN 99 (132)
T ss_pred heeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC--EE--EEEECCCCCCCChHHHHHHHHHcC
Confidence 567899999999997 669999999999 88899999888764 12 1222221111 133445567
Q ss_pred CCCCCcEEEEeCC
Q 044162 219 LGQENSIVIVDDT 231 (369)
Q Consensus 219 ~~~~~~vvIvDD~ 231 (369)
+.+.+.+++|+|+
T Consensus 100 ~~~~~~~v~IGD~ 112 (132)
T TIGR01662 100 EIDPEESVYVGDQ 112 (132)
T ss_pred CCChhheEEEcCC
Confidence 4788999999994
No 28
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.72 E-value=7.3e-05 Score=64.98 Aligned_cols=107 Identities=13% Similarity=0.017 Sum_probs=67.5
Q ss_pred EEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cCccEE
Q 044162 95 HLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RLFEIS 173 (369)
Q Consensus 95 ~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~yEi~ 173 (369)
+|++|+||||+......- ... +.-+++.||+.++|+.+. +.|.++
T Consensus 2 ~~~~d~dgtl~~~~~~~~-~~~---------------------------------~~~~~~~~g~~~~l~~Lk~~g~~~~ 47 (147)
T TIGR01656 2 ALFLDRDGVINEDTVSDY-PRS---------------------------------LDDWQLRPGAVPALLTLRAAGYTVV 47 (147)
T ss_pred eEEEeCCCceeccCCccc-CCC---------------------------------HHHeEEcCChHHHHHHHHHCCCEEE
Confidence 689999999998775321 000 112467899999999996 789999
Q ss_pred EecCCcH---------------HHHHHHHHHhCCCCC-cccceEEeeccccC------cccccccccCCCCCcEEEEeCC
Q 044162 174 VCTLGNR---------------EYATRAVKLLDPDCK-YFNSRIITREDFKQ------KERKYLDLVLGQENSIVIVDDT 231 (369)
Q Consensus 174 I~T~g~~---------------~YA~~i~~~lDp~~~-~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~vvIvDD~ 231 (369)
|.|++.+ .++..+++.++..-. +|...+.+.+.... .+.+-++.++.+.+.+++|+|+
T Consensus 48 I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs 127 (147)
T TIGR01656 48 VVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDR 127 (147)
T ss_pred EEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCC
Confidence 9999874 567777777665410 11110100111111 1233345567788999999998
Q ss_pred cccc
Q 044162 232 ESVW 235 (369)
Q Consensus 232 ~~~w 235 (369)
..-.
T Consensus 128 ~~Di 131 (147)
T TIGR01656 128 LRDL 131 (147)
T ss_pred HHHH
Confidence 6433
No 29
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.71 E-value=5.4e-05 Score=74.38 Aligned_cols=110 Identities=19% Similarity=0.170 Sum_probs=72.7
Q ss_pred CceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cCc
Q 044162 92 RKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RLF 170 (369)
Q Consensus 92 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~y 170 (369)
.+.+||+|||+||..-..-. +.+ ..+ -+....||+.++|+.+. +.+
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e----------------------~g~-----~~i------~~~~~~~~~~e~L~~L~~~Gi 48 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGE----------------------DGI-----DNL------NLSPLHKTLQEKIKTLKKQGF 48 (320)
T ss_pred CeEEEEEcCCCCCCCCEEcc----------------------CCc-----ccc------ccCccHHHHHHHHHHHHhCCC
Confidence 46899999999999654211 100 000 11234799999999997 779
Q ss_pred cEEEecCCcHHHHHHHHHH----hCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCcccc
Q 044162 171 EISVCTLGNREYATRAVKL----LDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVW 235 (369)
Q Consensus 171 Ei~I~T~g~~~YA~~i~~~----lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~~~w 235 (369)
.+.|.|+..+..|..+++. +... .+|..-..+.........+-++.++-+.+.+|+|||++.-.
T Consensus 49 ~lai~S~n~~~~a~~~l~~~~~~~~~~-~~f~~~~~~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~d~ 116 (320)
T TIGR01686 49 LLALASKNDEDDAKKVFERRKDFILQA-EDFDARSINWGPKSESLRKIAKKLNLGTDSFLFIDDNPAER 116 (320)
T ss_pred EEEEEcCCCHHHHHHHHHhCccccCcH-HHeeEEEEecCchHHHHHHHHHHhCCCcCcEEEECCCHHHH
Confidence 9999999999999999987 5544 35643222211111112333455777889999999988443
No 30
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.66 E-value=0.00012 Score=65.12 Aligned_cols=93 Identities=13% Similarity=0.068 Sum_probs=62.4
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCC---------------cHHHHHHHHHHhCCCCCcccceEEe----eccccCc--
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLG---------------NREYATRAVKLLDPDCKYFNSRIIT----REDFKQK-- 210 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g---------------~~~YA~~i~~~lDp~~~~f~~Ri~s----rd~~~~~-- 210 (369)
+++-||+.++|+.+. +.|.++|.|+. ...++..+++.++.. |...+++ .+++...
T Consensus 28 ~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~~~KP 104 (161)
T TIGR01261 28 LRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGII---FDDVLICPHFPDDNCDCRKP 104 (161)
T ss_pred eeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCCc---eeEEEECCCCCCCCCCCCCC
Confidence 677899999999998 57999999996 466888888888775 6444554 2443321
Q ss_pred ----ccccccccCCCCCcEEEEeCCccccccCCCceEEeCcc
Q 044162 211 ----ERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSY 248 (369)
Q Consensus 211 ----~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~~y 248 (369)
+..-++..+.+.+.+++|.|+..-......+++..--+
T Consensus 105 ~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~~i~~ 146 (161)
T TIGR01261 105 KIKLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIRGIQY 146 (161)
T ss_pred CHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCeEEEE
Confidence 12223345668889999999964333334555554433
No 31
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=97.66 E-value=5.4e-05 Score=72.66 Aligned_cols=90 Identities=17% Similarity=0.140 Sum_probs=67.0
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI 225 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v 225 (369)
+.++||+.++|+.+. +.+.++|.|++...++..+++.++-. .+|. .+++.++.... +.+-++.++.+.+.+
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~-~~f~-~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~ 177 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIG-RYFR-WIIGGDTLPQKKPDPAALLFVMKMAGVPPSQS 177 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcH-hhCe-EEEecCCCCCCCCCcHHHHHHHHHhCCChhHE
Confidence 568999999999997 57999999999999999999988765 4774 57766654421 223344566788999
Q ss_pred EEEeCCccccccCCCceEE
Q 044162 226 VIVDDTESVWGGRVENLIT 244 (369)
Q Consensus 226 vIvDD~~~~w~~~~~N~I~ 244 (369)
++|+|+..-......+++.
T Consensus 178 l~IGD~~~Di~aA~~aGi~ 196 (272)
T PRK13223 178 LFVGDSRSDVLAAKAAGVQ 196 (272)
T ss_pred EEECCCHHHHHHHHHCCCe
Confidence 9999998555443445543
No 32
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.59 E-value=0.00016 Score=68.37 Aligned_cols=136 Identities=15% Similarity=0.064 Sum_probs=77.6
Q ss_pred hhcCCceEEEEeCCCceeeeccC-----CCCCch-HHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHH
Q 044162 88 LLRMRKLHLVLDLDHTLLHSRLI-----GKLTSD-EKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRS 161 (369)
Q Consensus 88 ll~~~Kl~LVLDLD~TLIhs~~~-----~~~~~~-e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~e 161 (369)
|-.++++.++|||||||++|+.. +..+++ ..|++.+.. .+.+. . ...-.....|++.+
T Consensus 58 ~~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~-------------w~~~~--~-~~~~~s~p~~~a~e 121 (237)
T TIGR01672 58 LEGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVF-------------WEKVN--N-GWDEFSIPKEVARQ 121 (237)
T ss_pred cCCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHH-------------HHHHH--H-hcccCCcchhHHHH
Confidence 44555679999999999999862 111111 011111000 00000 0 00112344556999
Q ss_pred HHHHHh-cCccEEEecCC----cHHHHHHHHHHhCCCCCcccceEEeeccccCc-ccccccccCCCCCcEEEEeCCcccc
Q 044162 162 FLEEAS-RLFEISVCTLG----NREYATRAVKLLDPDCKYFNSRIITREDFKQK-ERKYLDLVLGQENSIVIVDDTESVW 235 (369)
Q Consensus 162 FL~~ls-~~yEi~I~T~g----~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~-~~KdL~~l~~~~~~vvIvDD~~~~w 235 (369)
||+++. +.+.++|.|+. .+.+++.+++.++-.. +| .-+++.++.... .-|. ..+ ...+.+++|-|+..=.
T Consensus 122 lL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~~-~f-~~i~~~d~~~~~Kp~~~-~~l-~~~~i~i~vGDs~~DI 197 (237)
T TIGR01672 122 LIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIPA-MN-PVIFAGDKPGQYQYTKT-QWI-QDKNIRIHYGDSDNDI 197 (237)
T ss_pred HHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCch-he-eEEECCCCCCCCCCCHH-HHH-HhCCCeEEEeCCHHHH
Confidence 999996 67999999998 6789999999888764 66 346655543221 1121 111 2344578899987555
Q ss_pred ccCCCceE
Q 044162 236 GGRVENLI 243 (369)
Q Consensus 236 ~~~~~N~I 243 (369)
.....+++
T Consensus 198 ~aAk~AGi 205 (237)
T TIGR01672 198 TAAKEAGA 205 (237)
T ss_pred HHHHHCCC
Confidence 43333443
No 33
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.58 E-value=6.3e-05 Score=72.63 Aligned_cols=122 Identities=17% Similarity=0.145 Sum_probs=85.3
Q ss_pred CCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cC
Q 044162 91 MRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RL 169 (369)
Q Consensus 91 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~ 169 (369)
.++..+++|+|+||......... .|. . ..-..+.||+.++|+++. ..
T Consensus 156 ~~~~~~~~D~dgtl~~~~~~~~~----~~~----~------------------------~~~~~~~~~~~~~l~~l~~~g 203 (300)
T PHA02530 156 GLPKAVIFDIDGTLAKMGGRSPY----DWT----K------------------------VKEDKPNPMVVELVKMYKAAG 203 (300)
T ss_pred CCCCEEEEECCCcCcCCCCCCcc----chh----h------------------------cccCCCChhHHHHHHHHHhCC
Confidence 45678999999999976542110 000 0 112456899999999997 56
Q ss_pred ccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeecc-------ccCc------ccccccccCC-CCCcEEEEeCCcccc
Q 044162 170 FEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRED-------FKQK------ERKYLDLVLG-QENSIVIVDDTESVW 235 (369)
Q Consensus 170 yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~-------~~~~------~~KdL~~l~~-~~~~vvIvDD~~~~w 235 (369)
+.++|.|+....+++.+++.|+..+.+|. .++..+. .... ..+.|..++. +.+.+++|||++...
T Consensus 204 ~~i~i~T~r~~~~~~~~l~~l~~~~~~f~-~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~ 282 (300)
T PHA02530 204 YEIIVVSGRDGVCEEDTVEWLRQTDIWFD-DLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVV 282 (300)
T ss_pred CEEEEEeCCChhhHHHHHHHHHHcCCchh-hhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHH
Confidence 99999999999999999999999876774 4555552 1111 2233444555 568999999999777
Q ss_pred ccCCCceEEe
Q 044162 236 GGRVENLITV 245 (369)
Q Consensus 236 ~~~~~N~I~I 245 (369)
.....+||++
T Consensus 283 ~~a~~~Gi~~ 292 (300)
T PHA02530 283 DMWRRIGLEC 292 (300)
T ss_pred HHHHHhCCeE
Confidence 6555666654
No 34
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.49 E-value=9.2e-05 Score=67.92 Aligned_cols=92 Identities=13% Similarity=0.076 Sum_probs=62.9
Q ss_pred EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeecc----------ccC-----ccccccc
Q 044162 153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRED----------FKQ-----KERKYLD 216 (369)
Q Consensus 153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~----------~~~-----~~~KdL~ 216 (369)
++++||+.+||+.+.+ .+.++|.|+|...++..+++.++-.. +|.+.+.+-+. +.. .+.+-++
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 162 (219)
T TIGR00338 84 LPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDA-AFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILLR 162 (219)
T ss_pred CCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc-eEeeEEEEECCEEEEEecCcccCCcccHHHHHHHHH
Confidence 5689999999999985 79999999999999999999987664 67654432110 000 0112233
Q ss_pred ccCCCCCcEEEEeCCccccccCCCceEEe
Q 044162 217 LVLGQENSIVIVDDTESVWGGRVENLITV 245 (369)
Q Consensus 217 ~l~~~~~~vvIvDD~~~~w~~~~~N~I~I 245 (369)
+++.+.+.+++|+|+..-.......++.|
T Consensus 163 ~~~~~~~~~i~iGDs~~Di~aa~~ag~~i 191 (219)
T TIGR00338 163 KEGISPENTVAVGDGANDLSMIKAAGLGI 191 (219)
T ss_pred HcCCCHHHEEEEECCHHHHHHHHhCCCeE
Confidence 45567789999999875443333344544
No 35
>COG4996 Predicted phosphatase [General function prediction only]
Probab=97.46 E-value=0.0005 Score=58.84 Aligned_cols=133 Identities=23% Similarity=0.294 Sum_probs=85.7
Q ss_pred EEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cCccEE
Q 044162 95 HLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RLFEIS 173 (369)
Q Consensus 95 ~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~yEi~ 173 (369)
.+|||+|+||-.....+++.+. |.. -+-..++ +..+.-+.++|++.+||+++. ..|-+.
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pP-------------f~r------Vs~n~i~-Ds~G~ev~L~~~v~~~l~warnsG~i~~ 61 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPP-------------FRR------VSSNTIE-DSKGREVHLFPDVKETLKWARNSGYILG 61 (164)
T ss_pred cEEEeCCCcccccccchhcCCc-------------cee------cCcccee-cCCCeEEEEcHHHHHHHHHHHhCCcEEE
Confidence 4799999999976555443221 110 0001111 123667999999999999997 788899
Q ss_pred EecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC-ccccccccc------CCCCCcEEEEeCCcc----ccccCCCce
Q 044162 174 VCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ-KERKYLDLV------LGQENSIVIVDDTES----VWGGRVENL 242 (369)
Q Consensus 174 I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~-~~~KdL~~l------~~~~~~vvIvDD~~~----~w~~~~~N~ 242 (369)
.+|=.-..-|-++++.+|-. .||..-++-..--.. +..+=|..+ .-.++.+|.+|||.. .|. .-.|+
T Consensus 62 ~~sWN~~~kA~~aLral~~~-~yFhy~ViePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe-~~G~V 139 (164)
T COG4996 62 LASWNFEDKAIKALRALDLL-QYFHYIVIEPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWE-YLGNV 139 (164)
T ss_pred EeecCchHHHHHHHHHhchh-hhEEEEEecCCChhHHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHH-hcCCe
Confidence 99999999999999999999 489654542211111 011112222 235789999999984 444 35666
Q ss_pred EEeCccc
Q 044162 243 ITVGSYD 249 (369)
Q Consensus 243 I~I~~y~ 249 (369)
=-++.|.
T Consensus 140 ~~~~~~~ 146 (164)
T COG4996 140 KCLEMWK 146 (164)
T ss_pred eeeEeec
Confidence 6666553
No 36
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.44 E-value=0.0004 Score=61.96 Aligned_cols=74 Identities=12% Similarity=-0.002 Sum_probs=50.0
Q ss_pred eCccHHHHHHHHh-cCccEEEecCCcHH------------HHHHHHHHhCCCCCcccceEEeeccccCc------ccccc
Q 044162 155 LRPFVRSFLEEAS-RLFEISVCTLGNRE------------YATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYL 215 (369)
Q Consensus 155 lRPgl~eFL~~ls-~~yEi~I~T~g~~~------------YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL 215 (369)
+-||+.+.|+.+. +.|.+.|.|++... ++..+++.++.. + .-+++.++.... ...-+
T Consensus 43 ~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~---~-~~ii~~~~~~~~KP~p~~~~~~~ 118 (166)
T TIGR01664 43 LYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP---I-QVLAATHAGLYRKPMTGMWEYLQ 118 (166)
T ss_pred ecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC---E-EEEEecCCCCCCCCccHHHHHHH
Confidence 5699999999996 78999999998763 566677777653 2 224433332111 11223
Q ss_pred cccC--CCCCcEEEEeCCc
Q 044162 216 DLVL--GQENSIVIVDDTE 232 (369)
Q Consensus 216 ~~l~--~~~~~vvIvDD~~ 232 (369)
+.++ .+.+.+++|.|++
T Consensus 119 ~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 119 SQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred HHcCCCCCchhcEEEECCC
Confidence 4455 6788999999996
No 37
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=97.43 E-value=0.00018 Score=67.05 Aligned_cols=84 Identities=19% Similarity=0.156 Sum_probs=69.1
Q ss_pred EEEeCccHHHHHHHHhcC-ccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCc
Q 044162 152 LVKLRPFVRSFLEEASRL-FEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENS 224 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls~~-yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~ 224 (369)
-++..||+.+||+.+... .-+.+-|++.+.-+..+++.++-.. +|...+. .++... .|.+-.++|+.+++.
T Consensus 84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~-~f~~~v~-~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~ 161 (221)
T COG0637 84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLLD-YFDVIVT-ADDVARGKPAPDIYLLAAERLGVDPEE 161 (221)
T ss_pred CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccChh-hcchhcc-HHHHhcCCCCCHHHHHHHHHcCCChHH
Confidence 368999999999999866 9999999999999999999999874 7876554 555432 267778889999999
Q ss_pred EEEEeCCcccccc
Q 044162 225 IVIVDDTESVWGG 237 (369)
Q Consensus 225 vvIvDD~~~~w~~ 237 (369)
+|+|+|++.--..
T Consensus 162 CvviEDs~~Gi~A 174 (221)
T COG0637 162 CVVVEDSPAGIQA 174 (221)
T ss_pred eEEEecchhHHHH
Confidence 9999999865543
No 38
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.40 E-value=0.00073 Score=60.38 Aligned_cols=87 Identities=13% Similarity=-0.006 Sum_probs=54.9
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcH---------------HHHHHHHHHhCCCCCcccceEEee-----------c
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNR---------------EYATRAVKLLDPDCKYFNSRIITR-----------E 205 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~---------------~YA~~i~~~lDp~~~~f~~Ri~sr-----------d 205 (369)
+++-||+.++|+++. +.|.++|.|++.. .|...++..+... |. .++.. +
T Consensus 25 ~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-~i~~~~~~~~~~~~~~~ 100 (176)
T TIGR00213 25 FEFIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAERDVD---LD-GIYYCPHHPEGVEEFRQ 100 (176)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcCCC---cc-EEEECCCCCcccccccC
Confidence 556799999999997 6799999999985 3444555443322 22 22211 1
Q ss_pred cccC------cccccccccCCCCCcEEEEeCCccccccCCCceE
Q 044162 206 DFKQ------KERKYLDLVLGQENSIVIVDDTESVWGGRVENLI 243 (369)
Q Consensus 206 ~~~~------~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I 243 (369)
++.. .+.+-+++++-+.+.+++|+|+..-......+++
T Consensus 101 ~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~Di~aA~~aG~ 144 (176)
T TIGR00213 101 VCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLEDMQAGVAAKV 144 (176)
T ss_pred CCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHHHHHHHHHCCC
Confidence 2211 1344456677789999999999754433334454
No 39
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.37 E-value=0.0011 Score=59.34 Aligned_cols=79 Identities=9% Similarity=-0.095 Sum_probs=51.4
Q ss_pred EEeCccHHHHHHHHhc-CccEEEecCCcH---------------HHHHHHHHHhCCCCCcccceEEeec-----cccC--
Q 044162 153 VKLRPFVRSFLEEASR-LFEISVCTLGNR---------------EYATRAVKLLDPDCKYFNSRIITRE-----DFKQ-- 209 (369)
Q Consensus 153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~---------------~YA~~i~~~lDp~~~~f~~Ri~srd-----~~~~-- 209 (369)
+.+.||+.++|+++.+ .|.+.|.|+++. .+...+++.++ .+|.. ++... +...
T Consensus 28 ~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g---~~f~~-i~~~~~~~~~~~~~~K 103 (181)
T PRK08942 28 WIPIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSLADRG---GRLDG-IYYCPHHPEDGCDCRK 103 (181)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHcC---Cccce-EEECCCCCCCCCcCCC
Confidence 4578999999999985 699999999873 33344444443 23533 43222 1111
Q ss_pred ----cccccccccCCCCCcEEEEeCCcccc
Q 044162 210 ----KERKYLDLVLGQENSIVIVDDTESVW 235 (369)
Q Consensus 210 ----~~~KdL~~l~~~~~~vvIvDD~~~~w 235 (369)
.+.+-++.++.+.+.+++|+|++.-.
T Consensus 104 P~p~~~~~~~~~l~~~~~~~~~VgDs~~Di 133 (181)
T PRK08942 104 PKPGMLLSIAERLNIDLAGSPMVGDSLRDL 133 (181)
T ss_pred CCHHHHHHHHHHcCCChhhEEEEeCCHHHH
Confidence 13455566777889999999997433
No 40
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=97.36 E-value=0.0007 Score=62.54 Aligned_cols=91 Identities=9% Similarity=0.034 Sum_probs=57.8
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEE-eecc----------------ccCccccc
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRII-TRED----------------FKQKERKY 214 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~-srd~----------------~~~~~~Kd 214 (369)
+.++||+.+||+.+. +.+.++|.|++.+.|++.+++.+-+...++.+... +.+. |+....+-
T Consensus 73 ~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~ 152 (219)
T PRK09552 73 AEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLIPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSL 152 (219)
T ss_pred CCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhCCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHH
Confidence 689999999999997 67999999999999999999876222223332211 1111 11111223
Q ss_pred ccccCCCCCcEEEEeCCccccccCCCceE
Q 044162 215 LDLVLGQENSIVIVDDTESVWGGRVENLI 243 (369)
Q Consensus 215 L~~l~~~~~~vvIvDD~~~~w~~~~~N~I 243 (369)
++.+......+++|.|+..-.......++
T Consensus 153 l~~~~~~~~~~i~iGDs~~Di~aa~~Ag~ 181 (219)
T PRK09552 153 IRKLSDTNDFHIVIGDSITDLEAAKQADK 181 (219)
T ss_pred HHHhccCCCCEEEEeCCHHHHHHHHHCCc
Confidence 34455566789999998754433233344
No 41
>PLN02940 riboflavin kinase
Probab=97.35 E-value=0.00021 Score=71.99 Aligned_cols=91 Identities=7% Similarity=0.037 Sum_probs=67.1
Q ss_pred EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHH-HhCCCCCcccceEEeeccccCc------ccccccccCCCCC
Q 044162 152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVK-LLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQEN 223 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~-~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~ 223 (369)
.+.+.||+.++|+.+. +.+.+.|-|++.+.++..+++ ..+-. .+|. .+++.++.... +..-++.++-..+
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~Fd-~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~ 168 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESFS-VIVGGDEVEKGKPSPDIFLEAAKRLNVEPS 168 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhCC-EEEehhhcCCCCCCHHHHHHHHHHcCCChh
Confidence 3567899999999996 669999999999999998886 55544 4784 57777775431 3444566777889
Q ss_pred cEEEEeCCccccccCCCceEE
Q 044162 224 SIVIVDDTESVWGGRVENLIT 244 (369)
Q Consensus 224 ~vvIvDD~~~~w~~~~~N~I~ 244 (369)
.+|+|+|+..-.......|+.
T Consensus 169 ~~l~VGDs~~Di~aA~~aGi~ 189 (382)
T PLN02940 169 NCLVIEDSLPGVMAGKAAGME 189 (382)
T ss_pred HEEEEeCCHHHHHHHHHcCCE
Confidence 999999998555433344443
No 42
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.27 E-value=0.0018 Score=62.31 Aligned_cols=79 Identities=27% Similarity=0.299 Sum_probs=60.9
Q ss_pred hhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHH
Q 044162 86 KNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEE 165 (369)
Q Consensus 86 ~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ 165 (369)
..+.-..+-++|+|||.|||.......+ .-|.+.+-|.+
T Consensus 115 ~~~~~~~phVIVfDlD~TLItd~~~v~I-----------------------------------------r~~~v~~sL~~ 153 (297)
T PF05152_consen 115 ESLVWEPPHVIVFDLDSTLITDEGDVRI-----------------------------------------RDPAVYDSLRE 153 (297)
T ss_pred hhccCCCCcEEEEECCCcccccCCcccc-----------------------------------------CChHHHHHHHH
Confidence 3445577789999999999976542110 12788899999
Q ss_pred HhcCc-cEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccc
Q 044162 166 ASRLF-EISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDF 207 (369)
Q Consensus 166 ls~~y-Ei~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~ 207 (369)
+.+.+ -+++|+.|+++|+..-++.++.. .+| +-|++++..
T Consensus 154 Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~-~~F-d~ii~~G~~ 194 (297)
T PF05152_consen 154 LKEQGCVLVLWSYGNREHVRHSLKELKLE-GYF-DIIICGGNK 194 (297)
T ss_pred HHHcCCEEEEecCCCHHHHHHHHHHhCCc-ccc-EEEEeCCcc
Confidence 98665 89999999999999999999988 478 457766543
No 43
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.23 E-value=0.00098 Score=59.09 Aligned_cols=49 Identities=14% Similarity=0.216 Sum_probs=41.2
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEe
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIIT 203 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~s 203 (369)
+.++||+.++|+.+. ..+.++|.|++...+++.+++.++-. .+|. .+++
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~-~i~~ 120 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEK-DVFI-EIYS 120 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCCh-hhee-EEec
Confidence 689999999999997 56999999999999999999988765 3563 3554
No 44
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.17 E-value=0.00088 Score=57.80 Aligned_cols=83 Identities=27% Similarity=0.369 Sum_probs=67.9
Q ss_pred EEEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCC
Q 044162 151 LLVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQEN 223 (369)
Q Consensus 151 ~~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~ 223 (369)
...++.||+.++|+.++ +.+.++|.|++.+.++..+++.+... .+|. .+++.++.+.. +.+-++.++.+++
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~-~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~ 151 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFD-EIISSDDVGSRKPDPDAYRRALEKLGIPPE 151 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCS-EEEEGGGSSSSTTSHHHHHHHHHHHTSSGG
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-cccc-cccccchhhhhhhHHHHHHHHHHHcCCCcc
Confidence 46889999999999998 99999999999999999999999877 5785 57777766531 3444556677889
Q ss_pred cEEEEeCCcccc
Q 044162 224 SIVIVDDTESVW 235 (369)
Q Consensus 224 ~vvIvDD~~~~w 235 (369)
.+++|||++.-.
T Consensus 152 ~~~~vgD~~~d~ 163 (176)
T PF13419_consen 152 EILFVGDSPSDV 163 (176)
T ss_dssp GEEEEESSHHHH
T ss_pred eEEEEeCCHHHH
Confidence 999999998544
No 45
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=97.17 E-value=0.0025 Score=61.25 Aligned_cols=122 Identities=17% Similarity=0.100 Sum_probs=68.1
Q ss_pred cCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-c
Q 044162 90 RMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-R 168 (369)
Q Consensus 90 ~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~ 168 (369)
+.+++.+|||+|||+++.+.. ...+...-..|..++ .-+... .--...-||+.+||+.+. +
T Consensus 72 ~~kp~AVV~DIDeTvLdns~y---------~~~~~~~~~~~~~~~------w~~wv~---~~~a~~ipGA~e~L~~L~~~ 133 (266)
T TIGR01533 72 KDKKYAIVLDLDETVLDNSPY---------QGYQVLNNKPFDPET------WDKWVQ---AAQAKPVAGALDFLNYANSK 133 (266)
T ss_pred CCCCCEEEEeCccccccChHH---------HHHHhcCCCcCCHHH------HHHHHH---cCCCCcCccHHHHHHHHHHC
Confidence 578899999999999987632 111111001111100 000000 112445799999999995 6
Q ss_pred CccEEEecCCcHHHHHHHHHHh---CCCCCcccceEEeeccccCcccccccc--cCCCCCcEEEEeCCcc
Q 044162 169 LFEISVCTLGNREYATRAVKLL---DPDCKYFNSRIITREDFKQKERKYLDL--VLGQENSIVIVDDTES 233 (369)
Q Consensus 169 ~yEi~I~T~g~~~YA~~i~~~l---Dp~~~~f~~Ri~srd~~~~~~~KdL~~--l~~~~~~vvIvDD~~~ 233 (369)
...++|.|+....+.+...+.| +-.. ++.+.++.|++.. -|...+ +-..-.-++.|.|+..
T Consensus 134 G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~~-~~~d~lllr~~~~---~K~~rr~~I~~~y~Ivl~vGD~~~ 199 (266)
T TIGR01533 134 GVKIFYVSNRSEKEKAATLKNLKRFGFPQ-ADEEHLLLKKDKS---SKESRRQKVQKDYEIVLLFGDNLL 199 (266)
T ss_pred CCeEEEEeCCCcchHHHHHHHHHHcCcCC-CCcceEEeCCCCC---CcHHHHHHHHhcCCEEEEECCCHH
Confidence 7899999998866666544444 4332 2334577675422 243322 2233344777777754
No 46
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.12 E-value=0.0012 Score=58.83 Aligned_cols=107 Identities=18% Similarity=0.117 Sum_probs=70.6
Q ss_pred hhhhhhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHH
Q 044162 82 KRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRS 161 (369)
Q Consensus 82 ~~~~~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~e 161 (369)
......+...+-..+|+|+|+||..... ..+-||+.+
T Consensus 14 ~i~~~~~~~~~v~~vv~D~Dgtl~~~~~-------------------------------------------~~~~pgv~e 50 (170)
T TIGR01668 14 DLTIDLLKKVGIKGVVLDKDNTLVYPDH-------------------------------------------NEAYPALRD 50 (170)
T ss_pred hCCHHHHHHCCCCEEEEecCCccccCCC-------------------------------------------CCcChhHHH
Confidence 3344444556667899999999985421 123489999
Q ss_pred HHHHHhc-CccEEEecCCc-HHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCc--cccc
Q 044162 162 FLEEASR-LFEISVCTLGN-REYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTE--SVWG 236 (369)
Q Consensus 162 FL~~ls~-~yEi~I~T~g~-~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~--~~w~ 236 (369)
+|+.+.+ .+.++|.|++. ...+..+++.++... ++.. .......+.+-++.++.+.+.+++|+|+. ++-.
T Consensus 51 ~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl~~-~~~~----~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~a 124 (170)
T TIGR01668 51 WIEELKAAGRKLLIVSNNAGEQRAKAVEKALGIPV-LPHA----VKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMG 124 (170)
T ss_pred HHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCCEE-EcCC----CCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHH
Confidence 9999974 59999999999 788888877765431 1110 00001113344555667789999999996 4554
No 47
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.11 E-value=0.0013 Score=59.14 Aligned_cols=122 Identities=21% Similarity=0.225 Sum_probs=65.4
Q ss_pred eEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cCccE
Q 044162 94 LHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RLFEI 172 (369)
Q Consensus 94 l~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~yEi 172 (369)
..+|+|||.||-....+..+.+ +|.... .. . .-.+....-+++-|++.+.|+++. ....|
T Consensus 4 klvvFDLD~TlW~~~~~~~~~~-------------Pf~~~~---~~-~--~v~D~~g~~v~lypdv~~iL~~L~~~gv~l 64 (169)
T PF12689_consen 4 KLVVFDLDYTLWPPWMDTHVGP-------------PFKKIS---NG-N--VVVDSRGEEVSLYPDVPEILQELKERGVKL 64 (169)
T ss_dssp SEEEE-STTTSSSS-TTTSS-S--------------EEE-T---TS-----EEETT--EE---TTHHHHHHHHHHCT--E
T ss_pred cEEEEcCcCCCCchhHhhccCC-------------CceecC---CC-C--EEEeCCCCEEEeCcCHHHHHHHHHHCCCEE
Confidence 4679999999987665443211 111111 00 0 011223667899999999999998 68999
Q ss_pred EEec-CCcHHHHHHHHHHhCCC---------CCcccceEEeeccccCccccccc-ccCCCCCcEEEEeCCcccc
Q 044162 173 SVCT-LGNREYATRAVKLLDPD---------CKYFNSRIITREDFKQKERKYLD-LVLGQENSIVIVDDTESVW 235 (369)
Q Consensus 173 ~I~T-~g~~~YA~~i~~~lDp~---------~~~f~~Ri~srd~~~~~~~KdL~-~l~~~~~~vvIvDD~~~~w 235 (369)
.+-| +.....|.++++.|+-. ..+|.+--+.+. +...+.+.|. ..+-+.+.++.+||....-
T Consensus 65 avASRt~~P~~A~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g-sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~ 137 (169)
T PF12689_consen 65 AVASRTDEPDWARELLKLLEIDDADGDGVPLIEYFDYLEIYPG-SKTTHFRRIHRKTGIPYEEMLFFDDESRNI 137 (169)
T ss_dssp EEEE--S-HHHHHHHHHHTT-C----------CCECEEEESSS--HHHHHHHHHHHH---GGGEEEEES-HHHH
T ss_pred EEEECCCChHHHHHHHHhcCCCccccccccchhhcchhheecC-chHHHHHHHHHhcCCChhHEEEecCchhcc
Confidence 9999 56789999999998876 135544333232 2222344444 3466888899999987543
No 48
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.09 E-value=0.0013 Score=59.66 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=55.8
Q ss_pred EEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeec-------cccCcccc--cccccCCCC
Q 044162 152 LVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRE-------DFKQKERK--YLDLVLGQE 222 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd-------~~~~~~~K--dL~~l~~~~ 222 (369)
.+.+.||+.+||+.+.+.+.++|.|++.+.+++.+++.++-. .+|.+.+...+ +......| -+..+....
T Consensus 66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~-~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~ 144 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWP-TLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLG 144 (205)
T ss_pred hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCc-hhhcceEEECCCCeEECccccccchHHHHHHHHHHhC
Confidence 356789999999999866999999999999999999998865 36655433211 11111111 122233344
Q ss_pred CcEEEEeCCccc
Q 044162 223 NSIVIVDDTESV 234 (369)
Q Consensus 223 ~~vvIvDD~~~~ 234 (369)
..+++|.|+..=
T Consensus 145 ~~~v~iGDs~~D 156 (205)
T PRK13582 145 YRVIAAGDSYND 156 (205)
T ss_pred CeEEEEeCCHHH
Confidence 689999998743
No 49
>PRK08238 hypothetical protein; Validated
Probab=97.08 E-value=0.0007 Score=70.28 Aligned_cols=88 Identities=15% Similarity=0.219 Sum_probs=59.0
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc--ccccccccC--CCCCcEEE
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK--ERKYLDLVL--GQENSIVI 227 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~--~~KdL~~l~--~~~~~vvI 227 (369)
...+|++.++|+++. +.+.++|-|++.+.+++++++.++- | +.+++.++.... ..|- ..+. -+.+.++.
T Consensus 71 lp~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----F-d~Vigsd~~~~~kg~~K~-~~l~~~l~~~~~~y 144 (479)
T PRK08238 71 LPYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----F-DGVFASDGTTNLKGAAKA-AALVEAFGERGFDY 144 (479)
T ss_pred CCCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----C-CEEEeCCCccccCCchHH-HHHHHHhCccCeeE
Confidence 357899999999996 7899999999999999999998853 5 356655543221 1121 1111 12344677
Q ss_pred EeCCc---cccccCCCceEEeCc
Q 044162 228 VDDTE---SVWGGRVENLITVGS 247 (369)
Q Consensus 228 vDD~~---~~w~~~~~N~I~I~~ 247 (369)
+.|+. .+|.. -+|.+.|.|
T Consensus 145 vGDS~~Dlp~~~~-A~~av~Vn~ 166 (479)
T PRK08238 145 AGNSAADLPVWAA-ARRAIVVGA 166 (479)
T ss_pred ecCCHHHHHHHHh-CCCeEEECC
Confidence 78877 55553 467776654
No 50
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=97.01 E-value=0.0007 Score=66.67 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=52.4
Q ss_pred HhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCccccccc
Q 044162 312 SRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA 368 (369)
Q Consensus 312 ~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a 368 (369)
.++|+|+.+|+||+.--.+..|+--|-.|||+...|-+.+.||+||+=.+|-|++|-
T Consensus 315 ~klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV 371 (508)
T KOG3226|consen 315 SKLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQV 371 (508)
T ss_pred HHhhhceEEEEecccCchHHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhc
Confidence 678999999999987556678999999999999999999999999999999999874
No 51
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=96.90 E-value=0.0014 Score=60.02 Aligned_cols=79 Identities=20% Similarity=0.180 Sum_probs=64.5
Q ss_pred EEEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCc
Q 044162 152 LVKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENS 224 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~ 224 (369)
++.+.||+.+||+.+.+ .+.+.|.|++.+.++...++.++-. .+|. .+++.++.+. .+.+-++.++-+.+.
T Consensus 92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~f~-~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 169 (221)
T TIGR02253 92 YLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVR-DFFD-AVITSEEEGVEKPHPKIFYAALKRLGVKPEE 169 (221)
T ss_pred hCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChH-Hhcc-EEEEeccCCCCCCCHHHHHHHHHHcCCChhh
Confidence 57899999999999985 5999999999999999999999876 4785 5776666543 134556677878899
Q ss_pred EEEEeCCc
Q 044162 225 IVIVDDTE 232 (369)
Q Consensus 225 vvIvDD~~ 232 (369)
+|+|+|++
T Consensus 170 ~~~igDs~ 177 (221)
T TIGR02253 170 AVMVGDRL 177 (221)
T ss_pred EEEECCCh
Confidence 99999997
No 52
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=96.89 E-value=0.0046 Score=55.10 Aligned_cols=127 Identities=21% Similarity=0.223 Sum_probs=92.4
Q ss_pred HHHHHHhhhhhhhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEE
Q 044162 75 DEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVK 154 (369)
Q Consensus 75 ~~a~~~~~~~~~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vk 154 (369)
+..+.+...+...|...+...+++|||+|||-=.. +.
T Consensus 10 ~~v~tv~~i~~~~L~~~Gikgvi~DlDNTLv~wd~-~~------------------------------------------ 46 (175)
T COG2179 10 KLVETVFDITPDILKAHGIKGVILDLDNTLVPWDN-PD------------------------------------------ 46 (175)
T ss_pred HHHhhHhhCCHHHHHHcCCcEEEEeccCceecccC-CC------------------------------------------
Confidence 34456677788889999999999999999994321 11
Q ss_pred eCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCc-
Q 044162 155 LRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTE- 232 (369)
Q Consensus 155 lRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~- 232 (369)
.=|-+++-+.++. +.-.++|.++.++.=+..++..||-+. + +| ..--.....-|-|..++-+.+.|++|-|.-
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~f--i-~~--A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~ 121 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVPF--I-YR--AKKPFGRAFRRALKEMNLPPEEVVMVGDQLF 121 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCce--e-ec--ccCccHHHHHHHHHHcCCChhHEEEEcchhh
Confidence 1267778888887 558999999999999999999999773 1 11 111111224566777888999999999975
Q ss_pred -cccccCCCc--eEEeCccc
Q 044162 233 -SVWGGRVEN--LITVGSYD 249 (369)
Q Consensus 233 -~~w~~~~~N--~I~I~~y~ 249 (369)
|+...+... .|.|+|-.
T Consensus 122 TDVlggnr~G~~tIlV~Pl~ 141 (175)
T COG2179 122 TDVLGGNRAGMRTILVEPLV 141 (175)
T ss_pred hhhhcccccCcEEEEEEEec
Confidence 777665443 58888874
No 53
>PRK06769 hypothetical protein; Validated
Probab=96.68 E-value=0.0061 Score=54.53 Aligned_cols=90 Identities=12% Similarity=-0.018 Sum_probs=52.4
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHH-----HHHHHHHhCCCCCcccceEEeeccc----cC------ccccccc
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREY-----ATRAVKLLDPDCKYFNSRIITREDF----KQ------KERKYLD 216 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~Y-----A~~i~~~lDp~~~~f~~Ri~srd~~----~~------~~~KdL~ 216 (369)
+.+-||+.++|+++. +.|.+.|.|++.... .......+...| |.+.+++-..+ .. .+.+-++
T Consensus 27 ~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~ 104 (173)
T PRK06769 27 FTLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFG--FDDIYLCPHKHGDGCECRKPSTGMLLQAAE 104 (173)
T ss_pred eEECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCC--cCEEEECcCCCCCCCCCCCCCHHHHHHHHH
Confidence 456799999999997 579999999987421 011222232222 22223322211 11 1345566
Q ss_pred ccCCCCCcEEEEeCCccccccCCCceEE
Q 044162 217 LVLGQENSIVIVDDTESVWGGRVENLIT 244 (369)
Q Consensus 217 ~l~~~~~~vvIvDD~~~~w~~~~~N~I~ 244 (369)
+++.+.+.+++|+|++.-.......++.
T Consensus 105 ~l~~~p~~~i~IGD~~~Di~aA~~aGi~ 132 (173)
T PRK06769 105 KHGLDLTQCAVIGDRWTDIVAAAKVNAT 132 (173)
T ss_pred HcCCCHHHeEEEcCCHHHHHHHHHCCCe
Confidence 6777889999999997433322334443
No 54
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=96.67 E-value=0.0018 Score=61.15 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=72.0
Q ss_pred EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162 152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS 224 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~ 224 (369)
.+.+.||+.++|+.+. +.+.+.|-|++.+.+++.+++.++-. .||. .+++.++.... +.+-+++++.+.+.
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~-~~Fd-~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 183 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLS-DFFQ-AVIIGSECEHAKPHPDPYLKALEVLKVSKDH 183 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCh-hhCc-EEEecCcCCCCCCChHHHHHHHHHhCCChhH
Confidence 4678899999999995 67999999999999999999999877 4785 57767765431 45556777888899
Q ss_pred EEEEeCCccccccCCCceEEeC
Q 044162 225 IVIVDDTESVWGGRVENLITVG 246 (369)
Q Consensus 225 vvIvDD~~~~w~~~~~N~I~I~ 246 (369)
+++|+|++.-......+++.+-
T Consensus 184 ~l~vgDs~~Di~aA~~aGi~~i 205 (248)
T PLN02770 184 TFVFEDSVSGIKAGVAAGMPVV 205 (248)
T ss_pred EEEEcCCHHHHHHHHHCCCEEE
Confidence 9999999855443345565543
No 55
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=96.65 E-value=0.0018 Score=58.78 Aligned_cols=95 Identities=16% Similarity=0.091 Sum_probs=72.0
Q ss_pred EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162 152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS 224 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~ 224 (369)
.+.+.||+.++|+.+. +.+.++|.|++.+.++..+++.++-.+ +|. .+++.++.... +.+-++.++.+.+.
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 160 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLAK-YFS-VLIGGDSLAQRKPHPDPLLLAAERLGVAPQQ 160 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHh-hCc-EEEecCCCCCCCCChHHHHHHHHHcCCChhH
Confidence 4688999999999997 669999999999999999999988764 674 57766654321 34445667778889
Q ss_pred EEEEeCCccccccCCCceEEeCcc
Q 044162 225 IVIVDDTESVWGGRVENLITVGSY 248 (369)
Q Consensus 225 vvIvDD~~~~w~~~~~N~I~I~~y 248 (369)
+++|+|++.-.......++++-..
T Consensus 161 ~~~igDs~~d~~aa~~aG~~~i~v 184 (213)
T TIGR01449 161 MVYVGDSRVDIQAARAAGCPSVLL 184 (213)
T ss_pred eEEeCCCHHHHHHHHHCCCeEEEE
Confidence 999999986665444556655443
No 56
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=96.64 E-value=0.0038 Score=56.99 Aligned_cols=91 Identities=16% Similarity=0.168 Sum_probs=68.6
Q ss_pred EEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------cccccccc-CCCCCc
Q 044162 152 LVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLV-LGQENS 224 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l-~~~~~~ 224 (369)
.++++||+.++|+.+.+.+.++|-|++.+.++..+++.++-.+ +|. .+++.++.... +.+-++++ +..++.
T Consensus 95 ~~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~-~fd-~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 172 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLFP-FFD-DIFVSEDAGIQKPDKEIFNYALERMPKFSKEE 172 (224)
T ss_pred cCeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcHh-hcC-EEEEcCccCCCCCCHHHHHHHHHHhcCCCchh
Confidence 3689999999999998669999999999999999999987764 784 57766665431 34556677 778889
Q ss_pred EEEEeCCc-cccccCCCceEE
Q 044162 225 IVIVDDTE-SVWGGRVENLIT 244 (369)
Q Consensus 225 vvIvDD~~-~~w~~~~~N~I~ 244 (369)
+|+|+|++ .-......++++
T Consensus 173 ~v~igD~~~~di~~A~~~G~~ 193 (224)
T TIGR02254 173 VLMIGDSLTADIKGGQNAGLD 193 (224)
T ss_pred eEEECCCcHHHHHHHHHCCCc
Confidence 99999986 233222344543
No 57
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=96.61 E-value=0.0068 Score=56.13 Aligned_cols=89 Identities=16% Similarity=0.131 Sum_probs=63.8
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI 225 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v 225 (369)
..+-||+.+.|+.++ +.|.+.|.|+..+..++.+++.++-.. +|.- +++-++.... ...-+..++.+.+.+
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~-~F~~-i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~ 165 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD-YFDV-IVGGDDVPPPKPDPEPLLLLLEKLGLDPEEA 165 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc-ccce-EEcCCCCCCCCcCHHHHHHHHHHhCCChhhe
Confidence 578899999999997 788999999999999999999999884 7853 5542322221 122334455565689
Q ss_pred EEEeCCccccccCCCceE
Q 044162 226 VIVDDTESVWGGRVENLI 243 (369)
Q Consensus 226 vIvDD~~~~w~~~~~N~I 243 (369)
++|=|+..=....+..++
T Consensus 166 l~VGDs~~Di~aA~~Ag~ 183 (220)
T COG0546 166 LMVGDSLNDILAAKAAGV 183 (220)
T ss_pred EEECCCHHHHHHHHHcCC
Confidence 999998855543334443
No 58
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=96.58 E-value=0.01 Score=59.44 Aligned_cols=105 Identities=14% Similarity=0.148 Sum_probs=66.8
Q ss_pred CceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cCc
Q 044162 92 RKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RLF 170 (369)
Q Consensus 92 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~y 170 (369)
+|.+|+||-|+||+...... |.. + ....+.+.||+.++|+++. +.|
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~-------y~~------------~--------------~~~~~~l~pGV~e~L~~Lk~~G~ 47 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTD-------FQV------------D--------------SLDKLAFEPGVIPALLKLQKAGY 47 (354)
T ss_pred CCcEEEEeCCCCccCCCCcc-------ccc------------c--------------CcccceECcCHHHHHHHHHhCCC
Confidence 47889999999999865311 110 0 0234788999999999997 569
Q ss_pred cEEEecCC---------------cHHHHHHHHHHhCCCCCcccceEEee----ccccCcc------cccccccCCCCCcE
Q 044162 171 EISVCTLG---------------NREYATRAVKLLDPDCKYFNSRIITR----EDFKQKE------RKYLDLVLGQENSI 225 (369)
Q Consensus 171 Ei~I~T~g---------------~~~YA~~i~~~lDp~~~~f~~Ri~sr----d~~~~~~------~KdL~~l~~~~~~v 225 (369)
.++|.|+. .+.++..+++.++- +|..-+++. +++.... ..-+..++-+.+.+
T Consensus 48 kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL~~~gl---~fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~s 124 (354)
T PRK05446 48 KLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIFESQGI---KFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANS 124 (354)
T ss_pred eEEEEECCccccCccccHHHHhhHHHHHHHHHHHcCC---ceeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccE
Confidence 99999994 24455555555543 353323432 3333211 11122345678999
Q ss_pred EEEeCCc
Q 044162 226 VIVDDTE 232 (369)
Q Consensus 226 vIvDD~~ 232 (369)
++|-|+.
T Consensus 125 vmIGDs~ 131 (354)
T PRK05446 125 YVIGDRE 131 (354)
T ss_pred EEEcCCH
Confidence 9999986
No 59
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=96.57 E-value=0.0016 Score=58.16 Aligned_cols=87 Identities=20% Similarity=0.162 Sum_probs=64.8
Q ss_pred EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC----------cccccccccCCCC
Q 044162 153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ----------KERKYLDLVLGQE 222 (369)
Q Consensus 153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~----------~~~KdL~~l~~~~ 222 (369)
++..||+.++|+++. +.++|.|++.+.++..+++.++-. .+|. .+++.++... .+.+-++.++.++
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~-~~fd-~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~ 158 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIE-DCFD-GIFCFDTANPDYLLPKPSPQAYEKALREAGVDP 158 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcH-hhhC-eEEEeecccCccCCCCCCHHHHHHHHHHhCCCc
Confidence 567899999999997 689999999999999999998865 4785 4776665432 1234455677888
Q ss_pred CcEEEEeCCccccccCCCceE
Q 044162 223 NSIVIVDDTESVWGGRVENLI 243 (369)
Q Consensus 223 ~~vvIvDD~~~~w~~~~~N~I 243 (369)
+.+++|+|++.-.......|+
T Consensus 159 ~~~l~vgD~~~di~aA~~~G~ 179 (184)
T TIGR01993 159 ERAIFFDDSARNIAAAKALGM 179 (184)
T ss_pred cceEEEeCCHHHHHHHHHcCC
Confidence 999999999744333334444
No 60
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=96.57 E-value=0.0019 Score=58.26 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=66.6
Q ss_pred EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162 153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI 225 (369)
Q Consensus 153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v 225 (369)
+.+.||+.++|+.+.+ .|.++|.|++...++..+++.++-. .+|. .+++.++.... +.+-++.++.+++.+
T Consensus 91 ~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~fd-~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~~ 168 (198)
T TIGR01428 91 LPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPFD-AVLSADAVRAYKPAPQVYQLALEALGVPPDEV 168 (198)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhhh-eeEehhhcCCCCCCHHHHHHHHHHhCCChhhE
Confidence 5678999999999986 5999999999999999999988755 4784 57766665431 334455677788999
Q ss_pred EEEeCCccccccCCCceE
Q 044162 226 VIVDDTESVWGGRVENLI 243 (369)
Q Consensus 226 vIvDD~~~~w~~~~~N~I 243 (369)
++|+|++.-.......|+
T Consensus 169 ~~vgD~~~Di~~A~~~G~ 186 (198)
T TIGR01428 169 LFVASNPWDLGGAKKFGF 186 (198)
T ss_pred EEEeCCHHHHHHHHHCCC
Confidence 999999844433333443
No 61
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=96.55 E-value=0.0025 Score=57.87 Aligned_cols=92 Identities=17% Similarity=0.125 Sum_probs=70.0
Q ss_pred EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162 152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS 224 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~ 224 (369)
.+.+.||+.++|+.+. +.+.++|.|++.+.++..+++.++-.+ +|. .+++.++.... +.+-++.++.+.+.
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~-~f~-~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 150 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLLP-LFD-HVIGSDEVPRPKPAPDIVREALRLLDVPPED 150 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCChh-hee-eEEecCcCCCCCCChHHHHHHHHHcCCChhh
Confidence 4678999999999996 679999999999999999999988874 775 57766665321 23334556777899
Q ss_pred EEEEeCCccccccCCCceEEe
Q 044162 225 IVIVDDTESVWGGRVENLITV 245 (369)
Q Consensus 225 vvIvDD~~~~w~~~~~N~I~I 245 (369)
+++|+|++.-......+|+++
T Consensus 151 ~l~igD~~~Di~aA~~~Gi~~ 171 (205)
T TIGR01454 151 AVMVGDAVTDLASARAAGTAT 171 (205)
T ss_pred eEEEcCCHHHHHHHHHcCCeE
Confidence 999999985554445566654
No 62
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=96.55 E-value=0.0073 Score=57.14 Aligned_cols=82 Identities=10% Similarity=0.003 Sum_probs=52.2
Q ss_pred EEEEeCccHHHHHHHH-hcCccEEEecC----CcHHHHHHHHHHhCC-CCCcccceEEeeccccCcccccccccCCCCCc
Q 044162 151 LLVKLRPFVRSFLEEA-SRLFEISVCTL----GNREYATRAVKLLDP-DCKYFNSRIITREDFKQKERKYLDLVLGQENS 224 (369)
Q Consensus 151 ~~vklRPgl~eFL~~l-s~~yEi~I~T~----g~~~YA~~i~~~lDp-~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~ 224 (369)
.+....||+.+||+.+ .+.++|++-|+ ....+++.+++.++- ...+|. -+++.+.. ...-|. ..+ .....
T Consensus 111 ~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gip~~~~f~-vil~gd~~-~K~~K~-~~l-~~~~i 186 (237)
T PRK11009 111 EFSIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHIPADNMNP-VIFAGDKP-GQYTKT-QWL-KKKNI 186 (237)
T ss_pred ccCcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCCCccccee-EEEcCCCC-CCCCHH-HHH-HhcCC
Confidence 3466777899999999 68899999999 457789999986665 234663 45544432 111111 111 13344
Q ss_pred EEEEeCCccccc
Q 044162 225 IVIVDDTESVWG 236 (369)
Q Consensus 225 vvIvDD~~~~w~ 236 (369)
+|+|-|+..=..
T Consensus 187 ~I~IGDs~~Di~ 198 (237)
T PRK11009 187 RIFYGDSDNDIT 198 (237)
T ss_pred eEEEcCCHHHHH
Confidence 788888864443
No 63
>PLN02954 phosphoserine phosphatase
Probab=96.53 E-value=0.0062 Score=55.94 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=40.6
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC-CcccceE
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC-KYFNSRI 201 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~-~~f~~Ri 201 (369)
..++||+.++|+.+. +.+.++|-|++.+.+++.+++.++-.. .+|.+++
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~ 133 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQI 133 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEE
Confidence 568899999999996 568999999999999999999987542 3665443
No 64
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=96.50 E-value=0.0054 Score=53.96 Aligned_cols=80 Identities=21% Similarity=0.151 Sum_probs=59.0
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI 225 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v 225 (369)
+.+.||+.+||+.+. ..+.++|.|++...+ ..+...++... +|.. +++.++.... +.+-++.++.+.+.+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~-~f~~-i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 160 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLRD-LFDV-VIFSGDVGRGKPDPDIYLLALKKLGLKPEEC 160 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHH-HCCE-EEEcCCCCCCCCCHHHHHHHHHHcCCCcceE
Confidence 688999999999997 579999999999999 66666577664 6754 5544444321 233445567788999
Q ss_pred EEEeCCcccc
Q 044162 226 VIVDDTESVW 235 (369)
Q Consensus 226 vIvDD~~~~w 235 (369)
++|||++.-.
T Consensus 161 ~~vgD~~~di 170 (183)
T TIGR01509 161 LFVDDSPAGI 170 (183)
T ss_pred EEEcCCHHHH
Confidence 9999998543
No 65
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=96.48 E-value=0.0027 Score=62.42 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=48.7
Q ss_pred hhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCc--ccccccC
Q 044162 313 RILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQS--ETFEWAE 369 (369)
Q Consensus 313 ~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT--~K~~~a~ 369 (369)
..+.|-+|||+|-+...+..++++++.+||++.+.++.+|+.|||..+.. .|.+.|+
T Consensus 231 ~l~~g~~~v~TG~l~~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~ 289 (313)
T PRK06063 231 PLVQGMRVALSAEVSRTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHAR 289 (313)
T ss_pred cccCCCEEEEecCCCCCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHH
Confidence 35799999999988754559999999999999999999999999987544 7887763
No 66
>PRK09449 dUMP phosphatase; Provisional
Probab=96.44 E-value=0.0055 Score=56.29 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=62.2
Q ss_pred EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCC-CCCcE
Q 044162 153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLG-QENSI 225 (369)
Q Consensus 153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~-~~~~v 225 (369)
+.+.||+.++|+.+.+.|.+.|.|++.+.++..+++.++..+ +|. .+++.++.... +.+-++.++. +.+.+
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~-~fd-~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~ 171 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLRD-YFD-LLVISEQVGVAKPDVAIFDYALEQMGNPDRSRV 171 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChHH-HcC-EEEEECccCCCCCCHHHHHHHHHHcCCCCcccE
Confidence 568999999999999889999999999999999999888764 784 57766665431 3445566664 45789
Q ss_pred EEEeCCc
Q 044162 226 VIVDDTE 232 (369)
Q Consensus 226 vIvDD~~ 232 (369)
++|+|++
T Consensus 172 ~~vgD~~ 178 (224)
T PRK09449 172 LMVGDNL 178 (224)
T ss_pred EEEcCCc
Confidence 9999996
No 67
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.43 E-value=0.0079 Score=63.11 Aligned_cols=107 Identities=17% Similarity=0.074 Sum_probs=70.0
Q ss_pred cCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-c
Q 044162 90 RMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-R 168 (369)
Q Consensus 90 ~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~ 168 (369)
..+..++.||+||||+.+.+........ .=|..+-||+.+.|+++. .
T Consensus 165 ~~~~Kia~fD~DGTLi~t~sg~~~~~~~--------------------------------~d~~~l~pgV~e~L~~L~~~ 212 (526)
T TIGR01663 165 KGQEKIAGFDLDGTIIKTKSGKVFPKGP--------------------------------DDWQIIFPEIPEKLKELEAD 212 (526)
T ss_pred CccCcEEEEECCCCccccCCCccCCCCH--------------------------------HHeeecccCHHHHHHHHHHC
Confidence 4567899999999999765321111000 001224599999999997 6
Q ss_pred CccEEEecCCcH------------HHHHHHHHHhCCCCCcccceEEeeccccCc---------cccccc-ccCCCCCcEE
Q 044162 169 LFEISVCTLGNR------------EYATRAVKLLDPDCKYFNSRIITREDFKQK---------ERKYLD-LVLGQENSIV 226 (369)
Q Consensus 169 ~yEi~I~T~g~~------------~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~---------~~KdL~-~l~~~~~~vv 226 (369)
.|.|+|+|+... .++..+++.++-. |. -+++.+++..+ ..+++. .++.+.+..+
T Consensus 213 Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgip---fd-viia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~ 288 (526)
T TIGR01663 213 GFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVP---FQ-VFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCF 288 (526)
T ss_pred CCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCCc---eE-EEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeE
Confidence 799999999776 5688888887643 53 45555554332 112221 1235788999
Q ss_pred EEeCCc
Q 044162 227 IVDDTE 232 (369)
Q Consensus 227 IvDD~~ 232 (369)
+|-|+.
T Consensus 289 ~VGDaa 294 (526)
T TIGR01663 289 FVGDAA 294 (526)
T ss_pred EeCCcc
Confidence 999987
No 68
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=96.36 E-value=0.004 Score=58.63 Aligned_cols=92 Identities=16% Similarity=-0.050 Sum_probs=69.8
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCC-CCCc
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLG-QENS 224 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~-~~~~ 224 (369)
+++.||+.++|+.+. +.+.+.|-|++++.+++.+++.++-.+ +|.+.+++.++... .+.+-+++++. +.+.
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~ 176 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG-YRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAA 176 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC-CCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchh
Confidence 678899999999996 579999999999999999999988775 55456887776532 13455566776 4789
Q ss_pred EEEEeCCccccccCCCceEEe
Q 044162 225 IVIVDDTESVWGGRVENLITV 245 (369)
Q Consensus 225 vvIvDD~~~~w~~~~~N~I~I 245 (369)
+|+|.|++.-.......|+..
T Consensus 177 ~l~IGDs~~Di~aA~~aGi~~ 197 (253)
T TIGR01422 177 CVKVGDTVPDIEEGRNAGMWT 197 (253)
T ss_pred eEEECCcHHHHHHHHHCCCeE
Confidence 999999985554444455543
No 69
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=96.34 E-value=0.0034 Score=61.53 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=48.0
Q ss_pred hhhcCceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEecC---------CCccccccc
Q 044162 313 RILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSN---------TQSETFEWA 368 (369)
Q Consensus 313 ~VL~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~---------~gT~K~~~a 368 (369)
..|.|-++||+|.+.. .+..++.+++.+||+|.+.++.+||.||+.. ..+.|.+.|
T Consensus 219 ~~l~g~~~vfTG~l~~~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA 284 (309)
T PRK06195 219 TAFKEEVVVFTGGLASMTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKA 284 (309)
T ss_pred ccccCCEEEEccccCCCCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHH
Confidence 4699999999999864 4569999999999999999999999999984 345677776
No 70
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=96.26 E-value=0.0043 Score=57.59 Aligned_cols=82 Identities=21% Similarity=0.169 Sum_probs=60.4
Q ss_pred EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------------cccccccccCC
Q 044162 153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------------KERKYLDLVLG 220 (369)
Q Consensus 153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------------~~~KdL~~l~~ 220 (369)
+|.-|=|++||-.|.+.+ .++||+|.+..|..+++.|+-.. .|.. |++-+-... .+.|-....+-
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGieD-cFeg-ii~~e~~np~~~~~vcKP~~~afE~a~k~agi 175 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIED-CFEG-IICFETLNPIEKTVVCKPSEEAFEKAMKVAGI 175 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChHH-hccc-eeEeeccCCCCCceeecCCHHHHHHHHHHhCC
Confidence 777788999999998777 99999999999999999999885 6743 443332210 12233333454
Q ss_pred -CCCcEEEEeCCcccccc
Q 044162 221 -QENSIVIVDDTESVWGG 237 (369)
Q Consensus 221 -~~~~vvIvDD~~~~w~~ 237 (369)
++.+++.+||+......
T Consensus 176 ~~p~~t~FfDDS~~NI~~ 193 (244)
T KOG3109|consen 176 DSPRNTYFFDDSERNIQT 193 (244)
T ss_pred CCcCceEEEcCchhhHHH
Confidence 48999999999876644
No 71
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=96.18 E-value=0.0078 Score=64.87 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=49.2
Q ss_pred hhcCceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEecCCCcccccccC
Q 044162 314 ILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE 369 (369)
Q Consensus 314 VL~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a~ 369 (369)
.|.|.++||+|-++. .++.+-++++++||+++..++.+|+.|||......|...|+
T Consensus 593 ~l~gktfV~TG~l~~~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~ 649 (669)
T PRK14350 593 FLFGKKFCITGSFNGYSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKAN 649 (669)
T ss_pred ccCCcEEEEecccCCCCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHH
Confidence 388999999998876 46699999999999999999999999999977678887763
No 72
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=96.13 E-value=0.004 Score=57.94 Aligned_cols=90 Identities=13% Similarity=0.080 Sum_probs=69.2
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI 225 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v 225 (369)
+.+.||+.++|+.+. +.+.+.|-|++.+.++...++.++-. .+|.. +++.++.... +.+-+++++.+++.+
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~fd~-iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~ 169 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLD-AHLDL-LLSTHTFGYPKEDQRLWQAVAEHTGLKAERT 169 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcH-HHCCE-EEEeeeCCCCCCCHHHHHHHHHHcCCChHHE
Confidence 678999999999998 57999999999999999999887765 47854 6555554421 344456678889999
Q ss_pred EEEeCCccccccCCCceEE
Q 044162 226 VIVDDTESVWGGRVENLIT 244 (369)
Q Consensus 226 vIvDD~~~~w~~~~~N~I~ 244 (369)
++|+|++.-......+|+.
T Consensus 170 l~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 170 LFIDDSEPILDAAAQFGIR 188 (224)
T ss_pred EEEcCCHHHHHHHHHcCCe
Confidence 9999998666544556664
No 73
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=96.13 E-value=0.0082 Score=64.78 Aligned_cols=69 Identities=14% Similarity=0.169 Sum_probs=57.5
Q ss_pred CcHHHHHHHHHHh-h----------hcCceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEecCCCccccccc
Q 044162 301 RDVRSCLAKIRSR-I----------LMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWA 368 (369)
Q Consensus 301 ~DVr~il~~~r~~-V----------L~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a 368 (369)
++.+.+|..++.. | |+|.++||+|-++. .+..+..+++.+||.|++.++.+|+-|||....+.|.+.|
T Consensus 566 ~~~~~~i~~L~~~gv~~~~~~~~~~~~g~~~v~TG~l~~~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~kA 645 (665)
T PRK07956 566 EENRELIDELLEAGVNMEYKGEEVDLAGKTVVLTGTLEQLSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAKA 645 (665)
T ss_pred hhHHHHHHHHHHcCCCccccccCCCccccEEEEeCCCCCCCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHHH
Confidence 4567777776642 2 88999999999976 5569999999999999999999999999998767888777
Q ss_pred C
Q 044162 369 E 369 (369)
Q Consensus 369 ~ 369 (369)
+
T Consensus 646 ~ 646 (665)
T PRK07956 646 Q 646 (665)
T ss_pred H
Confidence 3
No 74
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=96.12 E-value=0.0051 Score=56.63 Aligned_cols=91 Identities=13% Similarity=0.088 Sum_probs=70.4
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI 225 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v 225 (369)
..+.||+.++|+.+. +.+.++|.|++.+.+++.+++.++-.+ +|. .+++.++.... +..-++.++.+.+.+
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~-~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~ 168 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD-YFD-ALASAEKLPYSKPHPEVYLNCAAKLGVDPLTC 168 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh-ccc-EEEEcccCCCCCCCHHHHHHHHHHcCCCHHHe
Confidence 567899999999997 679999999999999999999988764 774 57767664321 344456677788999
Q ss_pred EEEeCCccccccCCCceEEe
Q 044162 226 VIVDDTESVWGGRVENLITV 245 (369)
Q Consensus 226 vIvDD~~~~w~~~~~N~I~I 245 (369)
++|+|+..-.......|++.
T Consensus 169 ~~igDs~~Di~aA~~aG~~~ 188 (222)
T PRK10826 169 VALEDSFNGMIAAKAARMRS 188 (222)
T ss_pred EEEcCChhhHHHHHHcCCEE
Confidence 99999997665544555543
No 75
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=95.89 E-value=0.015 Score=53.32 Aligned_cols=91 Identities=13% Similarity=0.075 Sum_probs=67.1
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC-CcccceEEeeccccCc------ccccccccCCC-CC
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC-KYFNSRIITREDFKQK------ERKYLDLVLGQ-EN 223 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~-~~f~~Ri~srd~~~~~------~~KdL~~l~~~-~~ 223 (369)
..+.||+.++|+.+. +.+.+.|-|++.+.++..+++.++-.. .+|. .+++.++.... +.+-+++++.. .+
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~-~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 164 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVD-AVVCPSDVAAGRPAPDLILRAMELTGVQDVQ 164 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCC-EEEcCCcCCCCCCCHHHHHHHHHHcCCCChh
Confidence 579999999999996 789999999999999999999988652 5784 57766664321 23445566655 68
Q ss_pred cEEEEeCCccccccCCCceEE
Q 044162 224 SIVIVDDTESVWGGRVENLIT 244 (369)
Q Consensus 224 ~vvIvDD~~~~w~~~~~N~I~ 244 (369)
.+++|+|++.-.......++.
T Consensus 165 ~~~~igD~~~Di~aa~~aG~~ 185 (220)
T TIGR03351 165 SVAVAGDTPNDLEAGINAGAG 185 (220)
T ss_pred HeEEeCCCHHHHHHHHHCCCC
Confidence 999999998444333334444
No 76
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=95.88 E-value=0.017 Score=52.75 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=66.5
Q ss_pred EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCc
Q 044162 152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENS 224 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~ 224 (369)
..+++||+.+||+.+. ..+.++|.|++...++..+++.++-. .+|. .+++.++.... +.+-++.++.+.+.
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 168 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIA-DYFS-VVIGGDSLPNKKPDPAPLLLACEKLGLDPEE 168 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCc-cCcc-EEEcCCCCCCCCcChHHHHHHHHHcCCChhh
Confidence 4778999999999998 57999999999999999999998876 4674 56765543321 23344556778899
Q ss_pred EEEEeCCccccccCCCceE
Q 044162 225 IVIVDDTESVWGGRVENLI 243 (369)
Q Consensus 225 vvIvDD~~~~w~~~~~N~I 243 (369)
+++|+|++.-.......++
T Consensus 169 ~i~igD~~~Di~~a~~~g~ 187 (226)
T PRK13222 169 MLFVGDSRNDIQAARAAGC 187 (226)
T ss_pred eEEECCCHHHHHHHHHCCC
Confidence 9999999755543333333
No 77
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=95.83 E-value=0.017 Score=52.87 Aligned_cols=82 Identities=20% Similarity=0.204 Sum_probs=66.1
Q ss_pred EEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCcE
Q 044162 152 LVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENSI 225 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~v 225 (369)
.+..-|++.++|+.+.+.|.++|.|+|...++...++.+.-. .+|.. +++.++.+. .+..-++.++.+++.+
T Consensus 97 ~~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~gl~-~~Fd~-v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~ 174 (229)
T COG1011 97 LLPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLGLL-DYFDA-VFISEDVGVAKPDPEIFEYALEKLGVPPEEA 174 (229)
T ss_pred hCccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcCCh-hhhhe-EEEecccccCCCCcHHHHHHHHHcCCCcceE
Confidence 378889999999999877999999999999999999999844 68854 666676652 1344566677789999
Q ss_pred EEEeCCcccc
Q 044162 226 VIVDDTESVW 235 (369)
Q Consensus 226 vIvDD~~~~w 235 (369)
++|||+...-
T Consensus 175 l~VgD~~~~d 184 (229)
T COG1011 175 LFVGDSLEND 184 (229)
T ss_pred EEECCChhhh
Confidence 9999998544
No 78
>PRK11587 putative phosphatase; Provisional
Probab=95.83 E-value=0.013 Score=53.81 Aligned_cols=90 Identities=14% Similarity=-0.009 Sum_probs=66.3
Q ss_pred EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCc
Q 044162 152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENS 224 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~ 224 (369)
.+.+.||+.++|+.+. +.+.+.|-|++++.++..+++...-. +| .-+++.++... .+.+-++.++..++.
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~--~~-~~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~ 157 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP--AP-EVFVTAERVKRGKPEPDAYLLGAQLLGLAPQE 157 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC--Cc-cEEEEHHHhcCCCCCcHHHHHHHHHcCCCccc
Confidence 4678999999999996 67999999999999988887766542 35 34666665432 145556677888899
Q ss_pred EEEEeCCccccccCCCceEE
Q 044162 225 IVIVDDTESVWGGRVENLIT 244 (369)
Q Consensus 225 vvIvDD~~~~w~~~~~N~I~ 244 (369)
+++|+|++.-.......|+.
T Consensus 158 ~l~igDs~~di~aA~~aG~~ 177 (218)
T PRK11587 158 CVVVEDAPAGVLSGLAAGCH 177 (218)
T ss_pred EEEEecchhhhHHHHHCCCE
Confidence 99999998555443445554
No 79
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=95.81 E-value=0.013 Score=51.33 Aligned_cols=86 Identities=12% Similarity=0.058 Sum_probs=56.5
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCC
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDT 231 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~ 231 (369)
+.++|+. -++++. +.+.++|.|+..+..+..+++.+.-. .+|... ........+-++.++.+.+.++.|-|+
T Consensus 29 ~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~-~~~~~~----~~k~~~~~~~~~~~~~~~~~~~~vGDs 101 (154)
T TIGR01670 29 FNVRDGY--GIRCALKSGIEVAIITGRKAKLVEDRCKTLGIT-HLYQGQ----SNKLIAFSDILEKLALAPENVAYIGDD 101 (154)
T ss_pred EechhHH--HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCC-EEEecc----cchHHHHHHHHHHcCCCHHHEEEECCC
Confidence 4667776 677776 57999999999999999999998876 355321 111111223334556677899999998
Q ss_pred ccccccCCCceEEe
Q 044162 232 ESVWGGRVENLITV 245 (369)
Q Consensus 232 ~~~w~~~~~N~I~I 245 (369)
..=...-...++.+
T Consensus 102 ~~D~~~~~~ag~~~ 115 (154)
T TIGR01670 102 LIDWPVMEKVGLSV 115 (154)
T ss_pred HHHHHHHHHCCCeE
Confidence 75554433444443
No 80
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=95.78 E-value=0.0061 Score=55.30 Aligned_cols=96 Identities=18% Similarity=0.045 Sum_probs=67.8
Q ss_pred EEEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCC
Q 044162 151 LLVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQEN 223 (369)
Q Consensus 151 ~~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~ 223 (369)
++..+.||+.++|+.+. +.|.++|-|++.+..+..++.....-..+|. .+++.++.... +..-++.++.+++
T Consensus 81 ~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd-~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~ 159 (199)
T PRK09456 81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAAD-HIYLSQDLGMRKPEARIYQHVLQAEGFSAA 159 (199)
T ss_pred HHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcC-EEEEecccCCCCCCHHHHHHHHHHcCCChh
Confidence 34678999999999997 5799999999998876655433211124674 57766665532 4455677788999
Q ss_pred cEEEEeCCccccccCCCceEEeCc
Q 044162 224 SIVIVDDTESVWGGRVENLITVGS 247 (369)
Q Consensus 224 ~vvIvDD~~~~w~~~~~N~I~I~~ 247 (369)
.+++|||++.-.......|+..--
T Consensus 160 ~~l~vgD~~~di~aA~~aG~~~i~ 183 (199)
T PRK09456 160 DAVFFDDNADNIEAANALGITSIL 183 (199)
T ss_pred HeEEeCCCHHHHHHHHHcCCEEEE
Confidence 999999998655444556666543
No 81
>COG5275 BRCT domain type II [General function prediction only]
Probab=95.73 E-value=0.01 Score=54.71 Aligned_cols=61 Identities=18% Similarity=0.112 Sum_probs=51.5
Q ss_pred HHHHHhhhcCceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEec-CCCccccccc
Q 044162 308 AKIRSRILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSS-NTQSETFEWA 368 (369)
Q Consensus 308 ~~~r~~VL~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~-~~gT~K~~~a 368 (369)
.+..+.-|+|..|||+|++|. .+...-.|+..+||+|+..+...+|-+|+. +.|..|++-+
T Consensus 150 peg~~~cL~G~~fVfTG~l~TlsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~eki 212 (276)
T COG5275 150 PEGERECLKGKVFVFTGDLKTLSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKI 212 (276)
T ss_pred CCCCcccccccEEEEecccccccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHH
Confidence 446778899999999999994 566778899999999999999999999997 4677776544
No 82
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=95.72 E-value=0.015 Score=63.02 Aligned_cols=55 Identities=18% Similarity=0.068 Sum_probs=47.8
Q ss_pred hcCceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEecC-CCcccccccC
Q 044162 315 LMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSN-TQSETFEWAE 369 (369)
Q Consensus 315 L~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~-~gT~K~~~a~ 369 (369)
|.|.++||+|.+.. .+..+..+++++||++..+++.+|+.||+.. .|..|.+.|+
T Consensus 610 l~g~~~v~TG~l~~~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~ 666 (689)
T PRK14351 610 LDGLTFVFTGSLSGYTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAE 666 (689)
T ss_pred CCCcEEEEccCCCCCCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHH
Confidence 88999999999876 4669999999999999999999999999986 4447877763
No 83
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.58 E-value=0.019 Score=53.39 Aligned_cols=50 Identities=10% Similarity=0.077 Sum_probs=44.1
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEe
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIIT 203 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~s 203 (369)
++++||+.+.++.+. ..+.++|.|.|-..++++|++.+.-+. .+.+++..
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~-~~an~l~~ 126 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDY-VVANELEI 126 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCch-heeeEEEE
Confidence 899999999999997 679999999999999999999999884 56665553
No 84
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=95.56 E-value=0.025 Score=53.11 Aligned_cols=76 Identities=12% Similarity=0.020 Sum_probs=50.7
Q ss_pred CccHHHHHHHHh-cCccEEEecCCcHHHHH--HHHHHhCCCCCcccceEEeeccccCccccc-ccccCCCCCcEEEEeCC
Q 044162 156 RPFVRSFLEEAS-RLFEISVCTLGNREYAT--RAVKLLDPDCKYFNSRIITREDFKQKERKY-LDLVLGQENSIVIVDDT 231 (369)
Q Consensus 156 RPgl~eFL~~ls-~~yEi~I~T~g~~~YA~--~i~~~lDp~~~~f~~Ri~srd~~~~~~~Kd-L~~l~~~~~~vvIvDD~ 231 (369)
-||+.++|+++. +.+.++|.|++++..+. +.++.++....+|. -|++.++....+... ++.++.+...+++|-|.
T Consensus 26 ~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~-~Ii~s~~~~~~~l~~~~~~~~~~~~~~~~vGd~ 104 (242)
T TIGR01459 26 YPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPE-MIISSGEIAVQMILESKKRFDIRNGIIYLLGHL 104 (242)
T ss_pred CccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccc-eEEccHHHHHHHHHhhhhhccCCCceEEEeCCc
Confidence 499999999997 67999999999998877 67777776532563 477655433222221 22334445667777775
Q ss_pred c
Q 044162 232 E 232 (369)
Q Consensus 232 ~ 232 (369)
+
T Consensus 105 ~ 105 (242)
T TIGR01459 105 E 105 (242)
T ss_pred c
Confidence 4
No 85
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=95.52 E-value=0.014 Score=56.38 Aligned_cols=92 Identities=17% Similarity=0.203 Sum_probs=65.1
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccc-eEEeeccccCc------ccccccccCCCCCc
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNS-RIITREDFKQK------ERKYLDLVLGQENS 224 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~-Ri~srd~~~~~------~~KdL~~l~~~~~~ 224 (369)
+++.||+.++|+.+. +.+.++|-|++++.++..+++.+.-. .+|.. .+++.+++... +.+-++.++.+.+.
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~-~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGP-ERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccc-cccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 578999999999997 67999999999999999999876311 13332 23345554321 23445667778899
Q ss_pred EEEEeCCccccccCCCceEEe
Q 044162 225 IVIVDDTESVWGGRVENLITV 245 (369)
Q Consensus 225 vvIvDD~~~~w~~~~~N~I~I 245 (369)
+++|+|++.-+.....+|+.+
T Consensus 222 ~l~IGDs~~Di~aA~~aG~~~ 242 (286)
T PLN02779 222 CVVVEDSVIGLQAAKAAGMRC 242 (286)
T ss_pred EEEEeCCHHhHHHHHHcCCEE
Confidence 999999987665544555443
No 86
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=95.52 E-value=0.0084 Score=53.06 Aligned_cols=87 Identities=16% Similarity=0.213 Sum_probs=62.6
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI 225 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v 225 (369)
+.+.||+.++|+.+. ..+.+.|-|++ .+++.+++.++-. .+|. .+++.++.... +.+-++.++...+.+
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~-~~f~-~v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 162 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLT-DYFD-AIVDADEVKEGKPHPETFLLAAELLGVSPNEC 162 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChH-HHCC-EeeehhhCCCCCCChHHHHHHHHHcCCCHHHe
Confidence 678999999999997 56899999988 7899999887766 4785 45555544321 234455667778999
Q ss_pred EEEeCCccccccCCCceE
Q 044162 226 VIVDDTESVWGGRVENLI 243 (369)
Q Consensus 226 vIvDD~~~~w~~~~~N~I 243 (369)
|+|+|++.-......+++
T Consensus 163 v~IgD~~~di~aA~~~G~ 180 (185)
T TIGR02009 163 VVFEDALAGVQAARAAGM 180 (185)
T ss_pred EEEeCcHhhHHHHHHCCC
Confidence 999999755443334444
No 87
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=95.43 E-value=0.013 Score=64.35 Aligned_cols=59 Identities=17% Similarity=0.031 Sum_probs=48.4
Q ss_pred HHHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecC-----CCcccccccC
Q 044162 310 IRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSN-----TQSETFEWAE 369 (369)
Q Consensus 310 ~r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~-----~gT~K~~~a~ 369 (369)
.....|.|+.|+|+|-++..+..+-.+.+.+||++++.+ .+.||+|++. .|+.|++.|+
T Consensus 185 ~~~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk 248 (815)
T PLN03122 185 APGKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAM 248 (815)
T ss_pred ccCCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHH
Confidence 345679999999999987645588889999999999999 5788999876 3567888774
No 88
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=95.38 E-value=0.021 Score=54.29 Aligned_cols=91 Identities=20% Similarity=0.061 Sum_probs=67.5
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCC-CCc
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQ-ENS 224 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~-~~~ 224 (369)
+.+-||+.++|+.+. +.+.+.|-|++.+..+..+++.+.-.+ +|.+.+++.++.... +.+-+++++.. .+.
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e 178 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQG-YRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAA 178 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcc
Confidence 577899999999996 679999999999999999999877654 443567777665421 34455667754 688
Q ss_pred EEEEeCCccccccCCCceEE
Q 044162 225 IVIVDDTESVWGGRVENLIT 244 (369)
Q Consensus 225 vvIvDD~~~~w~~~~~N~I~ 244 (369)
+++|+|++.-.......|+.
T Consensus 179 ~l~IGDs~~Di~aA~~aG~~ 198 (267)
T PRK13478 179 CVKVDDTVPGIEEGLNAGMW 198 (267)
T ss_pred eEEEcCcHHHHHHHHHCCCE
Confidence 99999998555444445554
No 89
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=95.33 E-value=0.015 Score=51.46 Aligned_cols=52 Identities=25% Similarity=0.224 Sum_probs=34.3
Q ss_pred EEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-cCccEE
Q 044162 95 HLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS-RLFEIS 173 (369)
Q Consensus 95 ~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls-~~yEi~ 173 (369)
++.+|||||||.+......+.. | .=|..+-|++.+-|+++. +.|.|+
T Consensus 2 ia~fD~DgTLi~~~s~~~f~~~-------------------~-------------~D~~~~~~~v~~~L~~l~~~Gy~Iv 49 (159)
T PF08645_consen 2 IAFFDLDGTLIKTKSGKKFPKD-------------------P-------------DDWKFFPPGVPEALRELHKKGYKIV 49 (159)
T ss_dssp EEEE-SCTTTEE-STSTTS-SS-------------------T-------------CGGEEC-TTHHHHHHHHHHTTEEEE
T ss_pred EEEEeCCCCccCCCCCCcCcCC-------------------H-------------HHhhhcchhHHHHHHHHHhcCCeEE
Confidence 6789999999998764321110 0 012345688999999997 699999
Q ss_pred EecCC
Q 044162 174 VCTLG 178 (369)
Q Consensus 174 I~T~g 178 (369)
|+|+-
T Consensus 50 IvTNQ 54 (159)
T PF08645_consen 50 IVTNQ 54 (159)
T ss_dssp EEEE-
T ss_pred EEeCc
Confidence 99986
No 90
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=95.32 E-value=0.046 Score=47.03 Aligned_cols=76 Identities=13% Similarity=0.111 Sum_probs=56.9
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc-----ccccccccCCCCCcEE
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK-----ERKYLDLVLGQENSIV 226 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~-----~~KdL~~l~~~~~~vv 226 (369)
....||+.++|+.+. +.+.++|.|++.+.++..+++.+ - ..+|. .+++.++.... +.+-++.++.+. .++
T Consensus 63 ~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l-~~~f~-~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~l 138 (154)
T TIGR01549 63 EAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-L-GDYFD-LILGSDEFGAKPEPEIFLAALESLGLPP-EVL 138 (154)
T ss_pred heeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-H-HhcCc-EEEecCCCCCCcCHHHHHHHHHHcCCCC-CEE
Confidence 445699999999995 67999999999999999999885 2 24674 57766665411 233345566666 899
Q ss_pred EEeCCc
Q 044162 227 IVDDTE 232 (369)
Q Consensus 227 IvDD~~ 232 (369)
+|+|++
T Consensus 139 ~iGDs~ 144 (154)
T TIGR01549 139 HVGDNL 144 (154)
T ss_pred EEeCCH
Confidence 999985
No 91
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=95.15 E-value=0.04 Score=49.71 Aligned_cols=77 Identities=12% Similarity=0.106 Sum_probs=57.5
Q ss_pred EEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162 153 VKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI 225 (369)
Q Consensus 153 vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v 225 (369)
+++-||+.++|+.+.+ .+.+.|.|++.+.+ ..+++.++-. .+|. .+++.++.... +.+-++.++.+.+.+
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~-~~fd-~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~ 180 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLL-EYFD-FVVTSYEVGAEKPDPKIFQEALERAGISPEEA 180 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcH-Hhcc-eEEeecccCCCCCCHHHHHHHHHHcCCChhHE
Confidence 4678999999999984 69999999998764 6777777655 3674 46655554421 334455677788999
Q ss_pred EEEeCCc
Q 044162 226 VIVDDTE 232 (369)
Q Consensus 226 vIvDD~~ 232 (369)
++|+|+.
T Consensus 181 ~~IgD~~ 187 (203)
T TIGR02252 181 LHIGDSL 187 (203)
T ss_pred EEECCCc
Confidence 9999986
No 92
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=95.11 E-value=0.06 Score=48.62 Aligned_cols=77 Identities=18% Similarity=0.032 Sum_probs=59.8
Q ss_pred EeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc-----ccccccccCCCCCcEEE
Q 044162 154 KLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK-----ERKYLDLVLGQENSIVI 227 (369)
Q Consensus 154 klRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~-----~~KdL~~l~~~~~~vvI 227 (369)
+..|+..++|+.+. +.+.+.|.|++.+.+++.+++.++-. .+|. .+++.++.... +.+-++.++.+.+.+++
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~-~~f~-~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~ 183 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLE-ILFP-VQIWMEDCPPKPNPEPLILAAKALGVEACHAAM 183 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCch-hhCC-EEEeecCCCCCcCHHHHHHHHHHhCcCcccEEE
Confidence 45566799999998 56999999999999999999999876 4784 56666654321 23445567778889999
Q ss_pred EeCCc
Q 044162 228 VDDTE 232 (369)
Q Consensus 228 vDD~~ 232 (369)
|+|++
T Consensus 184 vGD~~ 188 (197)
T TIGR01548 184 VGDTV 188 (197)
T ss_pred EeCCH
Confidence 99987
No 93
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=95.08 E-value=0.016 Score=51.30 Aligned_cols=88 Identities=11% Similarity=0.146 Sum_probs=61.4
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCcE
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENSI 225 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~v 225 (369)
.++.||+.++|+.+. ..+.+.|-|++. .+..+++.++-. .+|. .+++.++... .+.+-+++++.+.+.+
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~ 161 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLI-DYFD-AIVDPAEIKKGKPDPEIFLAAAEGLGVSPSEC 161 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcH-hhCc-EEEehhhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence 467899999999996 679999999875 356778888766 4674 4665554332 1345566677788899
Q ss_pred EEEeCCccccccCCCceEE
Q 044162 226 VIVDDTESVWGGRVENLIT 244 (369)
Q Consensus 226 vIvDD~~~~w~~~~~N~I~ 244 (369)
|+|+|++.-......++++
T Consensus 162 v~vgD~~~di~aA~~aG~~ 180 (185)
T TIGR01990 162 IGIEDAQAGIEAIKAAGMF 180 (185)
T ss_pred EEEecCHHHHHHHHHcCCE
Confidence 9999997544333344443
No 94
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=95.00 E-value=0.024 Score=61.11 Aligned_cols=55 Identities=13% Similarity=0.103 Sum_probs=47.9
Q ss_pred hcCceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEecCCCcccccccC
Q 044162 315 LMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE 369 (369)
Q Consensus 315 L~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a~ 369 (369)
|.|.++||+|-++. .+..+..+++.+||+|+++++.+|+.||+......|.+.|+
T Consensus 585 l~gk~~v~TG~l~~~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~ 640 (652)
T TIGR00575 585 LAGKTFVLTGTLSQMSRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQ 640 (652)
T ss_pred ccCcEEEEeccCCCCCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHH
Confidence 78999999999875 45689999999999999999999999999976556887763
No 95
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=94.93 E-value=0.025 Score=50.64 Aligned_cols=82 Identities=15% Similarity=0.183 Sum_probs=59.1
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC---c------ccc--c----cc
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ---K------ERK--Y----LD 216 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~---~------~~K--d----L~ 216 (369)
+.++||+.++|+.+. +.+.++|.|++...+++.+++.++.+ .+|...+.+.+.... . .-| - ++
T Consensus 79 ~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~~ 157 (201)
T TIGR01491 79 ISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD-YVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLKR 157 (201)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC-eEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHHH
Confidence 678999999999997 67999999999999999999999866 467665554322110 0 011 1 22
Q ss_pred ccCCCCCcEEEEeCCcccc
Q 044162 217 LVLGQENSIVIVDDTESVW 235 (369)
Q Consensus 217 ~l~~~~~~vvIvDD~~~~w 235 (369)
.++.+.+.+++|.|+..-.
T Consensus 158 ~~~~~~~~~i~iGDs~~D~ 176 (201)
T TIGR01491 158 ELNPSLTETVAVGDSKNDL 176 (201)
T ss_pred HhCCCHHHEEEEcCCHhHH
Confidence 3455678899999997443
No 96
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=94.77 E-value=0.069 Score=45.66 Aligned_cols=50 Identities=16% Similarity=0.029 Sum_probs=37.0
Q ss_pred EeCccHHHHHHHH-hcCccEEEecCCcHHHHH------------HHHHHhCCCCCcccceEEee
Q 044162 154 KLRPFVRSFLEEA-SRLFEISVCTLGNREYAT------------RAVKLLDPDCKYFNSRIITR 204 (369)
Q Consensus 154 klRPgl~eFL~~l-s~~yEi~I~T~g~~~YA~------------~i~~~lDp~~~~f~~Ri~sr 204 (369)
...|.+.+-|+++ .+.+++++.|+-...... .+.+.|+.++--+ +.|+-|
T Consensus 24 ~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipY-d~l~~~ 86 (126)
T TIGR01689 24 APILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPY-DEIYVG 86 (126)
T ss_pred ccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCC-ceEEeC
Confidence 3578888999988 578999999988877766 6777887776333 445533
No 97
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=94.74 E-value=0.051 Score=58.02 Aligned_cols=57 Identities=16% Similarity=0.069 Sum_probs=49.5
Q ss_pred hhhcCceEEecccCCC-CChhHHHHHHhcCCEEEeccCCCceEEEecCCCcccccccC
Q 044162 313 RILMGCTILFGDDDFE-ELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE 369 (369)
Q Consensus 313 ~VL~g~~ivFSg~~p~-~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a~ 369 (369)
.+|.|.++||+|-++. .+..+..+++++||+|+.+++.+|.-|||...-..|...|+
T Consensus 593 ~~l~gkt~V~TGtL~~~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~ 650 (667)
T COG0272 593 SPLAGKTFVLTGTLEGMSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQ 650 (667)
T ss_pred cccCCCEEEEeccCCCCCHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHH
Confidence 4599999999999985 45588889999999999999999999999987777887663
No 98
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=94.67 E-value=0.015 Score=52.99 Aligned_cols=92 Identities=18% Similarity=0.048 Sum_probs=60.5
Q ss_pred EEEeCccHHHHHHHHh-cCccEEEecCCcHHH--HHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCC
Q 044162 152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREY--ATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQE 222 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~Y--A~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~ 222 (369)
.+++.||+.++|+.+. +.|.++|.|++...+ +...+..++-. .+|. .+++.++... .+.+-+++++.+.
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~-~~fd-~v~~s~~~~~~KP~p~~~~~~~~~~g~~~ 169 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIM-ALFD-AVVESCLEGLRKPDPRIYQLMLERLGVAP 169 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhH-hhCC-EEEEeeecCCCCCCHHHHHHHHHHcCCCH
Confidence 4678999999999997 579999999987655 32222222222 4674 4665554432 1345566777788
Q ss_pred CcEEEEeCCccccccCCCceEEe
Q 044162 223 NSIVIVDDTESVWGGRVENLITV 245 (369)
Q Consensus 223 ~~vvIvDD~~~~w~~~~~N~I~I 245 (369)
+.+++|||++.-.......|+..
T Consensus 170 ~~~l~i~D~~~di~aA~~aG~~~ 192 (211)
T TIGR02247 170 EECVFLDDLGSNLKPAAALGITT 192 (211)
T ss_pred HHeEEEcCCHHHHHHHHHcCCEE
Confidence 89999999986554434455544
No 99
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=94.61 E-value=0.085 Score=48.49 Aligned_cols=51 Identities=10% Similarity=0.038 Sum_probs=41.8
Q ss_pred EEEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHhCCCCCcccceEE
Q 044162 152 LVKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLLDPDCKYFNSRII 202 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~ 202 (369)
.+.+|||+.+||+.+.+ .+.++|.|++.+.|++.+++.+.+...++.++..
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~ 119 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEAD 119 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeE
Confidence 47899999999999985 6999999999999999999988654444444433
No 100
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=94.57 E-value=0.037 Score=51.73 Aligned_cols=92 Identities=16% Similarity=0.058 Sum_probs=63.7
Q ss_pred EEEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhC---CCCCcccceEEeecccc----CcccccccccCCCC
Q 044162 151 LLVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLD---PDCKYFNSRIITREDFK----QKERKYLDLVLGQE 222 (369)
Q Consensus 151 ~~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lD---p~~~~f~~Ri~srd~~~----~~~~KdL~~l~~~~ 222 (369)
....+.||+.++|+.+. +.+.++|+|+++..+...+++..+ -. .+|.. ++....+. ..+.+-++.++.++
T Consensus 92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~-~~f~~-~fd~~~g~KP~p~~y~~i~~~lgv~p 169 (220)
T TIGR01691 92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLT-PYFSG-YFDTTVGLKTEAQSYVKIAGQLGSPP 169 (220)
T ss_pred cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchh-hhcce-EEEeCcccCCCHHHHHHHHHHhCcCh
Confidence 34568999999999996 689999999999999998887753 22 24543 33211111 12455567778888
Q ss_pred CcEEEEeCCccccccCCCceEE
Q 044162 223 NSIVIVDDTESVWGGRVENLIT 244 (369)
Q Consensus 223 ~~vvIvDD~~~~w~~~~~N~I~ 244 (369)
+.+++|+|+..-.......|+.
T Consensus 170 ~e~lfVgDs~~Di~AA~~AG~~ 191 (220)
T TIGR01691 170 REILFLSDIINELDAARKAGLH 191 (220)
T ss_pred hHEEEEeCCHHHHHHHHHcCCE
Confidence 9999999998655443344443
No 101
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=94.42 E-value=0.041 Score=54.38 Aligned_cols=93 Identities=10% Similarity=0.000 Sum_probs=60.6
Q ss_pred EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeec---------cccCc-----cccc-c
Q 044162 152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRE---------DFKQK-----ERKY-L 215 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd---------~~~~~-----~~Kd-L 215 (369)
.+.++||+.++|+.+. ..+.+.|.|.|...+++.+.+.++-+. +|.+++--.+ +.... ..+. +
T Consensus 179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~-~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la 257 (322)
T PRK11133 179 NLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA-AVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLA 257 (322)
T ss_pred hCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe-EEEeEEEEECCEEEeEecCccCCcccHHHHHHHHH
Confidence 3678999999999997 569999999999999999999887653 3332221111 11011 1112 2
Q ss_pred cccCCCCCcEEEEeCCccccccCCCceEEe
Q 044162 216 DLVLGQENSIVIVDDTESVWGGRVENLITV 245 (369)
Q Consensus 216 ~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I 245 (369)
+.++-+.+.++.|-|...=.+.-...++.|
T Consensus 258 ~~lgi~~~qtIaVGDg~NDl~m~~~AGlgi 287 (322)
T PRK11133 258 QEYEIPLAQTVAIGDGANDLPMIKAAGLGI 287 (322)
T ss_pred HHcCCChhhEEEEECCHHHHHHHHHCCCeE
Confidence 345667889999999885554333344444
No 102
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=94.41 E-value=0.062 Score=43.88 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=24.0
Q ss_pred ccHHHHHHHHhc-CccEEEecCCc----HHHHHHH
Q 044162 157 PFVRSFLEEASR-LFEISVCTLGN----REYATRA 186 (369)
Q Consensus 157 Pgl~eFL~~ls~-~yEi~I~T~g~----~~YA~~i 186 (369)
||+.+||+.+.+ ...+++.|+++ ..|++.+
T Consensus 17 pga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L 51 (101)
T PF13344_consen 17 PGAVEALDALRERGKPVVFLTNNSSRSREEYAKKL 51 (101)
T ss_dssp TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHH
Confidence 999999999985 59999999998 4555555
No 103
>PTZ00445 p36-lilke protein; Provisional
Probab=94.36 E-value=0.047 Score=50.73 Aligned_cols=142 Identities=16% Similarity=0.116 Sum_probs=82.2
Q ss_pred ccCHHHHHHHhhhhhhhhhcCCceEEEEeCCCceee--eccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcC
Q 044162 71 RYSIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLH--SRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGD 148 (369)
Q Consensus 71 ~vs~~~a~~~~~~~~~~ll~~~Kl~LVLDLD~TLIh--s~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~ 148 (369)
.+|..++.+ .-.+.|.+.+=..+++|||+|||- |...-. +. +. .
T Consensus 24 ~~~~~~~~~---~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~--~~---------------------~~--------~ 69 (219)
T PTZ00445 24 HLNPHESAD---KFVDLLNECGIKVIASDFDLTMITKHSGGYID--PD---------------------ND--------D 69 (219)
T ss_pred cCCHHHHHH---HHHHHHHHcCCeEEEecchhhhhhhhcccccC--CC---------------------cc--------h
Confidence 345555433 334556778889999999999984 433210 00 00 1
Q ss_pred ceEEEEeCccHHHHHHHHh-cCccEEEecCCcHHH-----------HHHHHH-HhCCCCC------cc--cceEEeeccc
Q 044162 149 NVLLVKLRPFVRSFLEEAS-RLFEISVCTLGNREY-----------ATRAVK-LLDPDCK------YF--NSRIITREDF 207 (369)
Q Consensus 149 ~~~~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~Y-----------A~~i~~-~lDp~~~------~f--~~Ri~srd~~ 207 (369)
..+....+|.+.++++.+. ..+.|+|-|.+.+.. ..++++ .|.-.+- .+ --|++. +..
T Consensus 70 ~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~-~p~ 148 (219)
T PTZ00445 70 IRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQ-EPS 148 (219)
T ss_pred hhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccC-Chh
Confidence 1345678999999999997 689999999998865 222222 2331211 11 112221 110
Q ss_pred cC---------ccccc------ccccCCCCCcEEEEeCCccccccCCCceEEeCc
Q 044162 208 KQ---------KERKY------LDLVLGQENSIVIVDDTESVWGGRVENLITVGS 247 (369)
Q Consensus 208 ~~---------~~~Kd------L~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~~ 247 (369)
.. ..+|. ++..+.+++.++.|||++........-|+..--
T Consensus 149 ~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~ 203 (219)
T PTZ00445 149 DYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALH 203 (219)
T ss_pred hhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEE
Confidence 00 11222 234567899999999999877654445555433
No 104
>PLN02811 hydrolase
Probab=94.15 E-value=0.036 Score=51.08 Aligned_cols=90 Identities=10% Similarity=0.055 Sum_probs=60.3
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHH-HHHhCCCCCcccceEEeec--cccC------cccccccccC---
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRA-VKLLDPDCKYFNSRIITRE--DFKQ------KERKYLDLVL--- 219 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i-~~~lDp~~~~f~~Ri~srd--~~~~------~~~KdL~~l~--- 219 (369)
+.+.||+.++|+.++ ..+.+.|-|++.+.+.... .+..... .+|. .+++.+ ++.. .+.+-++.++
T Consensus 77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~-~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~~ 154 (220)
T PLN02811 77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMH-HVVTGDDPEVKQGKPAPDIFLAAARRFEDGP 154 (220)
T ss_pred CCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCC-EEEECChhhccCCCCCcHHHHHHHHHhCCCC
Confidence 567899999999997 5799999999998766543 3222222 3664 577777 4432 1344455564
Q ss_pred CCCCcEEEEeCCccccccCCCceEE
Q 044162 220 GQENSIVIVDDTESVWGGRVENLIT 244 (369)
Q Consensus 220 ~~~~~vvIvDD~~~~w~~~~~N~I~ 244 (369)
...+.+|+|+|+..-.......+++
T Consensus 155 ~~~~~~v~IgDs~~di~aA~~aG~~ 179 (220)
T PLN02811 155 VDPGKVLVFEDAPSGVEAAKNAGMS 179 (220)
T ss_pred CCccceEEEeccHhhHHHHHHCCCe
Confidence 6788999999998655443344443
No 105
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=94.12 E-value=0.019 Score=50.46 Aligned_cols=73 Identities=11% Similarity=0.094 Sum_probs=57.9
Q ss_pred EEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc------ccccccccCCCCCcE
Q 044162 152 LVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK------ERKYLDLVLGQENSI 225 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~------~~KdL~~l~~~~~~v 225 (369)
.+.+.||+.++|+. +.|.|++.+.++..+++.+.-. .+|. .+++.++.... +.+-+++++.+++.+
T Consensus 88 ~~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~-~~fd-~v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~ 159 (175)
T TIGR01493 88 NLPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLP-WYFD-RAFSVDTVRAYKPDPVVYELVFDTVGLPPDRV 159 (175)
T ss_pred cCCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCH-HHHh-hhccHhhcCCCCCCHHHHHHHHHHHCCCHHHe
Confidence 35689999999993 7899999999999999998765 4785 47777764321 455567778889999
Q ss_pred EEEeCCc
Q 044162 226 VIVDDTE 232 (369)
Q Consensus 226 vIvDD~~ 232 (369)
++|+|++
T Consensus 160 l~vgD~~ 166 (175)
T TIGR01493 160 LMVAAHQ 166 (175)
T ss_pred EeEecCh
Confidence 9999995
No 106
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=94.04 E-value=0.14 Score=49.66 Aligned_cols=95 Identities=14% Similarity=0.223 Sum_probs=62.8
Q ss_pred EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhC---CCCCcccceEEeec-cccCc--------cccc--c-
Q 044162 152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLD---PDCKYFNSRIITRE-DFKQK--------ERKY--L- 215 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lD---p~~~~f~~Ri~srd-~~~~~--------~~Kd--L- 215 (369)
-+.+|||+.+||+.+. ....++|+|+|...+++.+++.++ +...++.+++.-.+ ..... .-|. +
T Consensus 119 ~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v~ 198 (277)
T TIGR01544 119 DVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDVA 198 (277)
T ss_pred CCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHHH
Confidence 4889999999999996 679999999999999999999644 34445555544322 11100 1121 1
Q ss_pred ----cccC--CCCCcEEEEeCCcccccc-----CCCceEEeC
Q 044162 216 ----DLVL--GQENSIVIVDDTESVWGG-----RVENLITVG 246 (369)
Q Consensus 216 ----~~l~--~~~~~vvIvDD~~~~w~~-----~~~N~I~I~ 246 (369)
+.++ .+.+.+|+|.|+..=... +.+|.|.|-
T Consensus 199 ~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~g~~~~~~~l~ig 240 (277)
T TIGR01544 199 LRNTEYFNQLKDRSNIILLGDSQGDLRMADGVANVEHILKIG 240 (277)
T ss_pred HHHHHHhCccCCcceEEEECcChhhhhHhcCCCcccceEEEE
Confidence 1233 467789999998743321 345777774
No 107
>PHA02597 30.2 hypothetical protein; Provisional
Probab=93.99 E-value=0.036 Score=49.90 Aligned_cols=94 Identities=10% Similarity=0.032 Sum_probs=61.5
Q ss_pred EEEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCC---CcccceEEeeccccCc---ccccccccCCCCCcE
Q 044162 152 LVKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDC---KYFNSRIITREDFKQK---ERKYLDLVLGQENSI 225 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~---~~f~~Ri~srd~~~~~---~~KdL~~l~~~~~~v 225 (369)
.+++.||+.++|+.|.+.+.+++-|+++......+.+.+...+ .+|. .+++.++.... +.+-++.++ .+.+
T Consensus 72 ~~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~-~i~~~~~~~~kp~~~~~a~~~~~--~~~~ 148 (197)
T PHA02597 72 YLSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFS-EVLMCGHDESKEKLFIKAKEKYG--DRVV 148 (197)
T ss_pred hccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCccc-EEEEeccCcccHHHHHHHHHHhC--CCcE
Confidence 3678999999999999878888888877665555666654332 2453 45555554321 222334445 6779
Q ss_pred EEEeCCccccccCCCc--eEEeCcc
Q 044162 226 VIVDDTESVWGGRVEN--LITVGSY 248 (369)
Q Consensus 226 vIvDD~~~~w~~~~~N--~I~I~~y 248 (369)
|+|||+..-......+ +|++--+
T Consensus 149 v~vgDs~~di~aA~~a~~Gi~~i~~ 173 (197)
T PHA02597 149 CFVDDLAHNLDAAHEALSQLPVIHM 173 (197)
T ss_pred EEeCCCHHHHHHHHHHHcCCcEEEe
Confidence 9999999777655566 6765443
No 108
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=93.98 E-value=0.079 Score=47.75 Aligned_cols=73 Identities=10% Similarity=0.074 Sum_probs=47.6
Q ss_pred cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCccccccCCCceEEe
Q 044162 168 RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITV 245 (369)
Q Consensus 168 ~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I 245 (369)
+.+++.|-|+.....+..+++.+.-.. +|.. .++-.....+-++.++.+.+.+++|-|+..=...-...++.+
T Consensus 63 ~Gi~v~I~T~~~~~~v~~~l~~lgl~~-~f~g----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~~ 135 (183)
T PRK09484 63 SGIEVAIITGRKSKLVEDRMTTLGITH-LYQG----QSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLSV 135 (183)
T ss_pred CCCEEEEEeCCCcHHHHHHHHHcCCce-eecC----CCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCeE
Confidence 789999999999999999999987653 4531 111111123334556677889999988875443333345544
No 109
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=93.75 E-value=0.089 Score=47.23 Aligned_cols=112 Identities=19% Similarity=0.221 Sum_probs=70.4
Q ss_pred HHHhhhhhhh--hhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEe
Q 044162 78 SRLKKRNTKN--LLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKL 155 (369)
Q Consensus 78 ~~~~~~~~~~--ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vkl 155 (369)
..+...+.+. |.+.+=..||+|+|+||..-.. -.+
T Consensus 24 ~si~~I~~~~~~Lk~~Gik~li~DkDNTL~~~~~-------------------------------------------~~i 60 (168)
T PF09419_consen 24 PSIRDIDFEANHLKKKGIKALIFDKDNTLTPPYE-------------------------------------------DEI 60 (168)
T ss_pred CChhhCCcchhhhhhcCceEEEEcCCCCCCCCCc-------------------------------------------CcC
Confidence 4455555666 7788889999999999974322 112
Q ss_pred CccHHHHHHHHhcCc-c--EEEecCC-------cHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccC-----C
Q 044162 156 RPFVRSFLEEASRLF-E--ISVCTLG-------NREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVL-----G 220 (369)
Q Consensus 156 RPgl~eFL~~ls~~y-E--i~I~T~g-------~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~-----~ 220 (369)
-|-+.+.++++.+.| + |.|++++ ...-|+.+.+.|.-. +|.++.--. .|. .+-++.+. .
T Consensus 61 ~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp--vl~h~~kKP-~~~---~~i~~~~~~~~~~~ 134 (168)
T PF09419_consen 61 PPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP--VLRHRAKKP-GCF---REILKYFKCQKVVT 134 (168)
T ss_pred CHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc--EEEeCCCCC-ccH---HHHHHHHhhccCCC
Confidence 366778888888665 3 9999998 367788888888744 232221101 111 11122232 2
Q ss_pred CCCcEEEEeCCc--cccccC
Q 044162 221 QENSIVIVDDTE--SVWGGR 238 (369)
Q Consensus 221 ~~~~vvIvDD~~--~~w~~~ 238 (369)
..+.+++|.|+- +++..+
T Consensus 135 ~p~eiavIGDrl~TDVl~gN 154 (168)
T PF09419_consen 135 SPSEIAVIGDRLFTDVLMGN 154 (168)
T ss_pred CchhEEEEcchHHHHHHHhh
Confidence 478999999986 666544
No 110
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=93.73 E-value=0.055 Score=60.67 Aligned_cols=60 Identities=13% Similarity=0.110 Sum_probs=48.7
Q ss_pred HHHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecC---CCcccccccC
Q 044162 310 IRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSN---TQSETFEWAE 369 (369)
Q Consensus 310 ~r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~---~gT~K~~~a~ 369 (369)
...+.|+|++|+++|-++...+.+.++.+.+||+++..+++.+||+|+.. ....|+++|+
T Consensus 389 ~~~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk 451 (981)
T PLN03123 389 SESEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKAR 451 (981)
T ss_pred ccCCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHH
Confidence 44678999999999998765556667899999999999999999999974 3445666663
No 111
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=93.61 E-value=0.17 Score=47.44 Aligned_cols=98 Identities=11% Similarity=0.050 Sum_probs=70.9
Q ss_pred eEEEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhC-CCCCcccceEEeeccc--c------CcccccccccC
Q 044162 150 VLLVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLD-PDCKYFNSRIITREDF--K------QKERKYLDLVL 219 (369)
Q Consensus 150 ~~~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lD-p~~~~f~~Ri~srd~~--~------~~~~KdL~~l~ 219 (369)
....++-||+.++++.|. ..-.+.++|.+++..++..++.+. +- ..|++-++ -++- . ..|.+-.++++
T Consensus 88 ~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~-~~f~~~v~-~d~~~v~~gKP~Pdi~l~A~~~l~ 165 (222)
T KOG2914|consen 88 FMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIF-KNFSHVVL-GDDPEVKNGKPDPDIYLKAAKRLG 165 (222)
T ss_pred ccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHH-HhcCCCee-cCCccccCCCCCchHHHHHHHhcC
Confidence 556888899999999997 678899999999888888777654 44 45765555 2221 1 12567778888
Q ss_pred CCC-CcEEEEeCCcccccc---CCCceEEeCccc
Q 044162 220 GQE-NSIVIVDDTESVWGG---RVENLITVGSYD 249 (369)
Q Consensus 220 ~~~-~~vvIvDD~~~~w~~---~~~N~I~I~~y~ 249 (369)
.+. +.+++++|++.-... .--++|-|..+.
T Consensus 166 ~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~~ 199 (222)
T KOG2914|consen 166 VPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATPD 199 (222)
T ss_pred CCCccceEEECCCHHHHHHHHhcCCeEEEecCCC
Confidence 777 999999999976643 234567776643
No 112
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.50 E-value=0.085 Score=60.03 Aligned_cols=82 Identities=10% Similarity=0.115 Sum_probs=65.6
Q ss_pred eCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCcEEE
Q 044162 155 LRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENSIVI 227 (369)
Q Consensus 155 lRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~vvI 227 (369)
+-||+.++|++|. +.|.+.|.|++.+.+++.+++.++-...+|. .+++.++... .+.+-+++++.+.+.+|+
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd-~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~ 240 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFD-AIVSADAFENLKPAPDIFLAAAKILGVPTSECVV 240 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCC-EEEECcccccCCCCHHHHHHHHHHcCcCcccEEE
Confidence 5799999999996 6799999999999999999998876545774 5777776553 145556677888899999
Q ss_pred EeCCcccccc
Q 044162 228 VDDTESVWGG 237 (369)
Q Consensus 228 vDD~~~~w~~ 237 (369)
|+|++.-...
T Consensus 241 IgDs~~Di~A 250 (1057)
T PLN02919 241 IEDALAGVQA 250 (1057)
T ss_pred EcCCHHHHHH
Confidence 9999865543
No 113
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=93.01 E-value=0.1 Score=53.76 Aligned_cols=89 Identities=18% Similarity=0.179 Sum_probs=64.2
Q ss_pred EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC-----cccccccccCCCCCcE
Q 044162 152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ-----KERKYLDLVLGQENSI 225 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~-----~~~KdL~~l~~~~~~v 225 (369)
.+++.||+.++|+.+. +.+.+.|.|++.+.++..+++.++-.. ||. .+++.++... .+.+-++.+ +++.+
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~-~f~-~i~~~d~v~~~~kP~~~~~al~~l--~~~~~ 403 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ-WVT-ETFSIEQINSLNKSDLVKSILNKY--DIKEA 403 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh-hcc-eeEecCCCCCCCCcHHHHHHHHhc--CcceE
Confidence 3678999999999996 679999999999999999999988764 784 4776665421 122223333 35789
Q ss_pred EEEeCCccccccCCCceEE
Q 044162 226 VIVDDTESVWGGRVENLIT 244 (369)
Q Consensus 226 vIvDD~~~~w~~~~~N~I~ 244 (369)
++|.|++.-.......++.
T Consensus 404 v~VGDs~~Di~aAk~AG~~ 422 (459)
T PRK06698 404 AVVGDRLSDINAAKDNGLI 422 (459)
T ss_pred EEEeCCHHHHHHHHHCCCe
Confidence 9999998555433444543
No 114
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=92.70 E-value=0.24 Score=45.14 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=29.1
Q ss_pred ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162 157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD 193 (369)
Q Consensus 157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~ 193 (369)
|...+.|+++. +...++|.|.-+...+..+++.+.-.
T Consensus 18 ~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 55 (254)
T PF08282_consen 18 PETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID 55 (254)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC
T ss_pred HHHHHHHHhhcccceEEEEEccCcccccccccccccch
Confidence 45566777776 88899999999999999999876644
No 115
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=92.64 E-value=0.15 Score=48.10 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=42.3
Q ss_pred EEeCccHHHHHHHHh---cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEe
Q 044162 153 VKLRPFVRSFLEEAS---RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIIT 203 (369)
Q Consensus 153 vklRPgl~eFL~~ls---~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~s 203 (369)
+.+-||..+|++.++ ..++++|-|.|..-|.+.|++.-+-.. +|. .|+|
T Consensus 70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~-~f~-~I~T 121 (234)
T PF06888_consen 70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD-CFS-EIFT 121 (234)
T ss_pred CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc-ccc-eEEe
Confidence 677899999999994 489999999999999999999888764 674 4775
No 116
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=92.52 E-value=0.3 Score=46.56 Aligned_cols=37 Identities=14% Similarity=0.063 Sum_probs=30.6
Q ss_pred ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162 157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD 193 (369)
Q Consensus 157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~ 193 (369)
|...+.|+.+. +.+.++|.|.-....+..+++.++..
T Consensus 24 ~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~ 61 (273)
T PRK00192 24 EPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE 61 (273)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC
Confidence 55777888887 46899999999999999999988755
No 117
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=92.47 E-value=0.28 Score=45.77 Aligned_cols=37 Identities=22% Similarity=0.077 Sum_probs=27.0
Q ss_pred ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162 157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD 193 (369)
Q Consensus 157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~ 193 (369)
|...++|+++. +...+++.|.-++..+..+++.++..
T Consensus 18 ~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~ 55 (225)
T TIGR02461 18 GPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE 55 (225)
T ss_pred hHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence 34567777776 45888888888888777888777643
No 118
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=91.99 E-value=0.32 Score=47.86 Aligned_cols=34 Identities=24% Similarity=0.152 Sum_probs=22.2
Q ss_pred ccHHHHHHHHhc-----CccEEEecCCc----HHHHHHHHHHh
Q 044162 157 PFVRSFLEEASR-----LFEISVCTLGN----REYATRAVKLL 190 (369)
Q Consensus 157 Pgl~eFL~~ls~-----~yEi~I~T~g~----~~YA~~i~~~l 190 (369)
||+.++|+.+.. ...+.++|+.+ +.+|+.+.+.+
T Consensus 19 ~ga~eal~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~l 61 (321)
T TIGR01456 19 AGASDALRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLL 61 (321)
T ss_pred HHHHHHHHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHc
Confidence 677777777765 66777777664 55666664444
No 119
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=91.85 E-value=0.41 Score=43.83 Aligned_cols=35 Identities=14% Similarity=0.123 Sum_probs=28.5
Q ss_pred HHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162 159 VRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD 193 (369)
Q Consensus 159 l~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~ 193 (369)
..+.|+.+. +...++|.|.-+...+..+++.+...
T Consensus 21 ~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~ 56 (221)
T TIGR02463 21 AAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT 56 (221)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 566777776 56899999999999999999988754
No 120
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=91.77 E-value=0.49 Score=45.06 Aligned_cols=33 Identities=9% Similarity=0.120 Sum_probs=21.6
Q ss_pred HHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162 161 SFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD 193 (369)
Q Consensus 161 eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~ 193 (369)
+-|+++. +...++|.|.-+...+..+++.|+.+
T Consensus 31 ~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~ 64 (271)
T PRK03669 31 PWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ 64 (271)
T ss_pred HHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC
Confidence 3344544 45677777777777777777777654
No 121
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=91.60 E-value=0.42 Score=45.03 Aligned_cols=59 Identities=22% Similarity=0.163 Sum_probs=48.5
Q ss_pred CceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHH-hcCc
Q 044162 92 RKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA-SRLF 170 (369)
Q Consensus 92 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~l-s~~y 170 (369)
....+++||||||+..... ..|...+-|+++ ++..
T Consensus 2 ~~kli~~DlDGTLl~~~~~--------------------------------------------i~~~~~~al~~~~~~g~ 37 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKT--------------------------------------------ISPETKEALARLREKGV 37 (264)
T ss_pred CeeEEEEcCCCCccCCCCc--------------------------------------------cCHHHHHHHHHHHHCCC
Confidence 3567899999999986531 346677778877 5889
Q ss_pred cEEEecCCcHHHHHHHHHHhCCCC
Q 044162 171 EISVCTLGNREYATRAVKLLDPDC 194 (369)
Q Consensus 171 Ei~I~T~g~~~YA~~i~~~lDp~~ 194 (369)
.++|-|--+...+..+++.|..++
T Consensus 38 ~v~iaTGR~~~~~~~~~~~l~~~~ 61 (264)
T COG0561 38 KVVLATGRPLPDVLSILEELGLDG 61 (264)
T ss_pred EEEEECCCChHHHHHHHHHcCCCc
Confidence 999999999999999999998886
No 122
>PLN02645 phosphoglycolate phosphatase
Probab=91.11 E-value=0.31 Score=47.70 Aligned_cols=33 Identities=12% Similarity=-0.110 Sum_probs=24.1
Q ss_pred ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHH
Q 044162 157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKL 189 (369)
Q Consensus 157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~ 189 (369)
||..++|+.+. +...+++-|+.+..-...+++.
T Consensus 47 ~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~ 80 (311)
T PLN02645 47 EGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKK 80 (311)
T ss_pred cCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHH
Confidence 88889998886 6888999998774444444433
No 123
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=90.64 E-value=0.58 Score=43.91 Aligned_cols=38 Identities=16% Similarity=0.133 Sum_probs=28.7
Q ss_pred ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162 157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC 194 (369)
Q Consensus 157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~ 194 (369)
|...+.|+++. +...++|-|.-+...+..+++.++.+.
T Consensus 19 ~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~~ 57 (256)
T TIGR00099 19 PSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLDT 57 (256)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCCC
Confidence 44556666666 568899999999888888888877653
No 124
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=90.33 E-value=0.5 Score=43.44 Aligned_cols=50 Identities=10% Similarity=0.091 Sum_probs=43.8
Q ss_pred EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEe
Q 044162 153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIIT 203 (369)
Q Consensus 153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~s 203 (369)
+.++||+.+||+.+.+.+.++|-|++...+++++++.++-+ .+|.+++..
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~-~~~an~l~~ 116 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFP-TLLCHKLEI 116 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCc-hhhceeeEE
Confidence 56899999999999877899999999999999999999877 477766553
No 125
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=90.12 E-value=1.6 Score=41.10 Aligned_cols=130 Identities=12% Similarity=-0.107 Sum_probs=70.6
Q ss_pred hhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh
Q 044162 88 LLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS 167 (369)
Q Consensus 88 ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls 167 (369)
+-..+|..+|||+|+|++..... ..........|.... ...... .---..-|++.+|++.+.
T Consensus 72 ~~~dg~~A~V~DIDET~LsN~py---------~~~~~~g~~~~~~~~---~~~wv~------~~~apaip~al~l~~~l~ 133 (229)
T TIGR01675 72 LSGDGMDAWIFDVDDTLLSNIPY---------YKKHGYGTEKTDPTA---FWLWLG------KGAAPALPEGLKLYQKII 133 (229)
T ss_pred ccCCCCcEEEEccccccccCHHH---------HHHhccCCCcCCHHH---HHHHHH------cCCCCCCHHHHHHHHHHH
Confidence 34579999999999999976632 111111011110000 000000 001234599999999985
Q ss_pred -cCccEEEecCCcHHHHHHHHHHhCCCCCc-ccceEEeeccccCc----ccccccc---cCCCCCcEEEEeCCccccc
Q 044162 168 -RLFEISVCTLGNREYATRAVKLLDPDCKY-FNSRIITREDFKQK----ERKYLDL---VLGQENSIVIVDDTESVWG 236 (369)
Q Consensus 168 -~~yEi~I~T~g~~~YA~~i~~~lDp~~~~-f~~Ri~srd~~~~~----~~KdL~~---l~~~~~~vvIvDD~~~~w~ 236 (369)
..++|++.|.-+........+.|--.|-- + .+++=|...... ..|.-.+ ....-.-+..|+|...-+.
T Consensus 134 ~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~ 210 (229)
T TIGR01675 134 ELGIKIFLLSGRWEELRNATLDNLINAGFTGW-KHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLL 210 (229)
T ss_pred HCCCEEEEEcCCChHHHHHHHHHHHHcCCCCc-CeeeecCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHhc
Confidence 79999999998887766666665444411 1 455556421110 1133222 2234556678888765553
No 126
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=90.11 E-value=0.7 Score=42.19 Aligned_cols=38 Identities=13% Similarity=0.096 Sum_probs=29.0
Q ss_pred ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162 157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC 194 (369)
Q Consensus 157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~ 194 (369)
|...+-|+++. +.+.++|.|.-+...+..+++.|+.++
T Consensus 21 ~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~~ 59 (215)
T TIGR01487 21 ERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTSG 59 (215)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCCC
Confidence 44555566665 568889999988888889988888764
No 127
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=90.01 E-value=0.67 Score=40.87 Aligned_cols=30 Identities=17% Similarity=0.085 Sum_probs=24.3
Q ss_pred eCccHHHHHHHHh-cCccEEEecCCcHHHHH
Q 044162 155 LRPFVRSFLEEAS-RLFEISVCTLGNREYAT 184 (369)
Q Consensus 155 lRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~ 184 (369)
..|++.++++.+. +.|.+++.|.-....+.
T Consensus 28 ~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~ 58 (157)
T smart00775 28 THPGVAKLYRDIQNNGYKILYLTARPIGQAD 58 (157)
T ss_pred CCHHHHHHHHHHHHcCCeEEEEcCCcHHHHH
Confidence 3699999999997 67888888887766664
No 128
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=89.87 E-value=0.81 Score=43.14 Aligned_cols=65 Identities=15% Similarity=0.031 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhhcCceEEecc-----cCCCCCh---hHHHHHHhcCCEEEecc------C-----CCceEEEecCCCcc
Q 044162 303 VRSCLAKIRSRILMGCTILFGD-----DDFEELP---LTWSRAEEMGAICTLVT------D-----ASVTHVVSSNTQSE 363 (369)
Q Consensus 303 Vr~il~~~r~~VL~g~~ivFSg-----~~p~~~p---~lw~la~~~GA~v~~~i------~-----~~vTHvVa~~~gT~ 363 (369)
+..+..++....-.++.++.|+ +.|.+.. .+..|++.+|-....-+ + ..+-|-||..++++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA~~ 242 (270)
T PRK10513 163 LDAAIARIPAEVKERYTVLKSAPYFLEILDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNAIP 242 (270)
T ss_pred HHHHHHHhHHHhcCcEEEEEecCeeEEEeCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCccH
Confidence 3344444544433456666665 4455432 88889999995421111 1 24667788888877
Q ss_pred cccc
Q 044162 364 TFEW 367 (369)
Q Consensus 364 K~~~ 367 (369)
.++.
T Consensus 243 ~vK~ 246 (270)
T PRK10513 243 SVKE 246 (270)
T ss_pred HHHH
Confidence 7664
No 129
>PRK10444 UMP phosphatase; Provisional
Probab=89.44 E-value=0.58 Score=44.38 Aligned_cols=14 Identities=29% Similarity=0.691 Sum_probs=12.0
Q ss_pred EEEEeCCCceeeec
Q 044162 95 HLVLDLDHTLLHSR 108 (369)
Q Consensus 95 ~LVLDLD~TLIhs~ 108 (369)
.+++||||||++..
T Consensus 3 ~v~~DlDGtL~~~~ 16 (248)
T PRK10444 3 NVICDIDGVLMHDN 16 (248)
T ss_pred EEEEeCCCceEeCC
Confidence 57899999999864
No 130
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=89.25 E-value=0.37 Score=45.70 Aligned_cols=79 Identities=20% Similarity=0.145 Sum_probs=42.6
Q ss_pred hhhhhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHH
Q 044162 83 RNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSF 162 (369)
Q Consensus 83 ~~~~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eF 162 (369)
.+.-..-+.++..+|||||||+++.+... .| ++..-..|.+++ .-++. ..---+.=||+.||
T Consensus 69 d~~~k~~k~K~~aVvlDlDETvLdNs~Yq------gy---~v~nnk~f~pe~------Wd~wV---~a~~sk~vpGA~eF 130 (274)
T COG2503 69 DTQAKKKKGKKKAVVLDLDETVLDNSAYQ------GY---QVLNNKGFTPET------WDKWV---QAKKSKAVPGAVEF 130 (274)
T ss_pred HhhhccccCCCceEEEecchHhhcCcccc------ch---hhhcCCCCCccc------hHHHH---hhcccccCccHHHH
Confidence 33444566788899999999999876432 12 111112232221 00000 01124556999999
Q ss_pred HHHHhc-CccEEEecCCc
Q 044162 163 LEEASR-LFEISVCTLGN 179 (369)
Q Consensus 163 L~~ls~-~yEi~I~T~g~ 179 (369)
|+.+.+ .-.|+--|+-+
T Consensus 131 l~Yvn~~Gg~ifyiSNR~ 148 (274)
T COG2503 131 LNYVNSNGGKIFYISNRD 148 (274)
T ss_pred HHHHHhcCcEEEEEeccc
Confidence 999864 33444334333
No 131
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=89.06 E-value=0.8 Score=39.94 Aligned_cols=49 Identities=22% Similarity=0.288 Sum_probs=41.4
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEE
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRII 202 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~ 202 (369)
+.++||+.++|+.+. ..+.++|.|++.+.|++.+++.++-. .+|+.++.
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~~~~~ 121 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID-DVFANRLE 121 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc-hheeeeEE
Confidence 567999999999996 67899999999999999999998765 46665544
No 132
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=88.89 E-value=0.89 Score=40.98 Aligned_cols=35 Identities=17% Similarity=0.088 Sum_probs=28.4
Q ss_pred CccHHHHHHHHhcC-ccEEEecCCcHHHHHHHHHHh
Q 044162 156 RPFVRSFLEEASRL-FEISVCTLGNREYATRAVKLL 190 (369)
Q Consensus 156 RPgl~eFL~~ls~~-yEi~I~T~g~~~YA~~i~~~l 190 (369)
.|.+.+.|+++.+. ..++|-|..+..++..+++.+
T Consensus 19 ~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~ 54 (204)
T TIGR01484 19 SPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL 54 (204)
T ss_pred CHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhC
Confidence 36777888888754 789999999999999988874
No 133
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.86 E-value=0.79 Score=47.46 Aligned_cols=124 Identities=22% Similarity=0.278 Sum_probs=70.7
Q ss_pred hhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEc----CceEEEEeCccHHH
Q 044162 86 KNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIG----DNVLLVKLRPFVRS 161 (369)
Q Consensus 86 ~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~----~~~~~vklRPgl~e 161 (369)
..+-+..|.+||||||+||.--..-.. .+-.+++. |..++ -+++
T Consensus 215 ~A~~g~~kK~LVLDLDNTLWGGVIGed---------------------------Gv~GI~Ls~~~~G~~fk-----~fQ~ 262 (574)
T COG3882 215 AAMSGKSKKALVLDLDNTLWGGVIGED---------------------------GVDGIRLSNSAEGEAFK-----TFQN 262 (574)
T ss_pred HHhhCcccceEEEecCCcccccccccc---------------------------cccceeecCCCCchhHH-----HHHH
Confidence 344678999999999999986543210 01011111 11111 1355
Q ss_pred HHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------c----ccccccccCCCCCcEEEEeC
Q 044162 162 FLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------K----ERKYLDLVLGQENSIVIVDD 230 (369)
Q Consensus 162 FL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~----~~KdL~~l~~~~~~vvIvDD 230 (369)
|...+. +.+=+.|.+-.+..=|..+... -| +-|+.-++... . -.|-.+.|+-+.+..|.+||
T Consensus 263 ~Ik~l~kqGVlLav~SKN~~~da~evF~k-hp------~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD 335 (574)
T COG3882 263 FIKGLKKQGVLLAVCSKNTEKDAKEVFRK-HP------DMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDD 335 (574)
T ss_pred HHHHHHhccEEEEEecCCchhhHHHHHhh-CC------CeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecC
Confidence 666665 5667889998888888887743 12 22553333211 1 12333457788999999999
Q ss_pred CccccccCCCce-EEeCcc
Q 044162 231 TESVWGGRVENL-ITVGSY 248 (369)
Q Consensus 231 ~~~~w~~~~~N~-I~I~~y 248 (369)
+|---..-+.++ |.|.+|
T Consensus 336 ~p~ErE~vk~~~~v~Vi~~ 354 (574)
T COG3882 336 NPAERELVKRELPVSVIEF 354 (574)
T ss_pred CHHHHHHHHhcCceeeccC
Confidence 985543222222 566665
No 134
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=88.53 E-value=1.3 Score=41.53 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=19.7
Q ss_pred HHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162 161 SFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC 194 (369)
Q Consensus 161 eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~ 194 (369)
+-|+++. +...++|-|.-....+..+++.++.++
T Consensus 27 ~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (272)
T PRK10530 27 EALARAREAGYKVIIVTGRHHVAIHPFYQALALDT 61 (272)
T ss_pred HHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCCC
Confidence 3344443 456666666666666666666666543
No 135
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=88.48 E-value=0.69 Score=43.96 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=19.5
Q ss_pred ccHHHHHHHHh-cCccEEEecCCcHH
Q 044162 157 PFVRSFLEEAS-RLFEISVCTLGNRE 181 (369)
Q Consensus 157 Pgl~eFL~~ls-~~yEi~I~T~g~~~ 181 (369)
||..++|+.+. +...+++.|+.+..
T Consensus 24 ~~a~~al~~l~~~G~~~~~~Tn~~~~ 49 (257)
T TIGR01458 24 PGSQEAVKRLRGASVKVRFVTNTTKE 49 (257)
T ss_pred CCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 78888998887 56888888875543
No 136
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=88.08 E-value=1.1 Score=42.15 Aligned_cols=35 Identities=17% Similarity=0.111 Sum_probs=27.1
Q ss_pred HHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162 159 VRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD 193 (369)
Q Consensus 159 l~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~ 193 (369)
..++++.+. +...++|.|.-+...+..+++.++..
T Consensus 21 ~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~ 56 (256)
T TIGR01486 21 AKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE 56 (256)
T ss_pred HHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC
Confidence 567777776 45888899988888888888888743
No 137
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=87.79 E-value=0.65 Score=43.35 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=57.7
Q ss_pred EEeCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC------cccccccccCCCCCcEE
Q 044162 153 VKLRPFVRSFLEEASRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ------KERKYLDLVLGQENSIV 226 (369)
Q Consensus 153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~------~~~KdL~~l~~~~~~vv 226 (369)
+..-||+.++|+.+.+.|.+.|.|+|+.. ++..+-. .+|. .+++.++... .+.+-++.++.+.+.++
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~-~~fd-~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~ 184 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLG-DYFE-FVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEIL 184 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcH-Hhhc-eeEecccCCcCCCcHHHHHHHHHHcCCChhHEE
Confidence 55669999999999988999999999875 2444433 4674 4665554432 13444566777889999
Q ss_pred EEeCCc--cccccCCCceEEe
Q 044162 227 IVDDTE--SVWGGRVENLITV 245 (369)
Q Consensus 227 IvDD~~--~~w~~~~~N~I~I 245 (369)
+|.|++ ++-.. ..+|+..
T Consensus 185 ~VGD~~~~Di~~A-~~aG~~~ 204 (238)
T PRK10748 185 HVGDDLTTDVAGA-IRCGMQA 204 (238)
T ss_pred EEcCCcHHHHHHH-HHCCCeE
Confidence 998874 55543 3455543
No 138
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=87.74 E-value=1.4 Score=40.31 Aligned_cols=38 Identities=16% Similarity=0.037 Sum_probs=25.4
Q ss_pred ccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162 157 PFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC 194 (369)
Q Consensus 157 Pgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~ 194 (369)
|...+-|+++. +...++|-|.-+...+..+++.+..++
T Consensus 23 ~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~ 61 (230)
T PRK01158 23 LKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTSG 61 (230)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCCC
Confidence 34445555555 456777888777777778887777654
No 139
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=87.37 E-value=1.4 Score=40.01 Aligned_cols=101 Identities=11% Similarity=0.009 Sum_probs=61.2
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCc------------HHHHHHHHHHhCCCCCcccceEEeecc----ccCc-----
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGN------------REYATRAVKLLDPDCKYFNSRIITRED----FKQK----- 210 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~------------~~YA~~i~~~lDp~~~~f~~Ri~srd~----~~~~----- 210 (369)
..+.||+.+=|..+. ..|-++|+|+-+ ..+-..+.+.|--.|.-|...++.+.. |..+
T Consensus 30 ~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~g 109 (181)
T COG0241 30 FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPG 109 (181)
T ss_pred hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChH
Confidence 345699999999995 789999999932 223334566666666567665654332 3332
Q ss_pred -ccccccccCCCCCcEEEEeCCccccccCCCceEEeCccccccccc
Q 044162 211 -ERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVGSYDFFKDKK 255 (369)
Q Consensus 211 -~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~~y~fF~~~~ 255 (369)
...-++....|++..++|=|+..=-......+|. |+.|..+.+
T Consensus 110 m~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~--~~~~~~~~~ 153 (181)
T COG0241 110 MLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIK--GVLVLTGIG 153 (181)
T ss_pred HHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCC--ceEEEcCcc
Confidence 1222344567899999999996433322233444 666555544
No 140
>PLN02887 hydrolase family protein
Probab=87.23 E-value=1.2 Score=47.59 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=48.7
Q ss_pred CHHHHHHHhhhhhhhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEE
Q 044162 73 SIDEISRLKKRNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLL 152 (369)
Q Consensus 73 s~~~a~~~~~~~~~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~ 152 (369)
|.+.....++....|.++.+...+++||||||+++.. .++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~iKLIa~DLDGTLLn~d~--~Is-------------------------------------- 327 (580)
T PLN02887 288 QLEKSDDRKKEGSLRFYKPKFSYIFCDMDGTLLNSKS--QIS-------------------------------------- 327 (580)
T ss_pred ccccccchhhhcchhhhccCccEEEEeCCCCCCCCCC--ccC--------------------------------------
Confidence 3333344455556677777888999999999997643 222
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD 193 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~ 193 (369)
|...+-|+++. +...++|.|--...-+..+++.++.+
T Consensus 328 ----~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~ 365 (580)
T PLN02887 328 ----ETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLA 365 (580)
T ss_pred ----HHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcc
Confidence 22233444444 56777777777777777777776643
No 141
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=87.12 E-value=1 Score=43.07 Aligned_cols=60 Identities=13% Similarity=-0.033 Sum_probs=39.9
Q ss_pred CceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHhc--C
Q 044162 92 RKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASR--L 169 (369)
Q Consensus 92 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls~--~ 169 (369)
+++.+++|+||||+.....|.- ..+-|.+.+-|+.+++ .
T Consensus 13 ~~~li~~D~DGTLl~~~~~p~~---------------------------------------~~i~~~~~~~L~~L~~~~g 53 (266)
T PRK10187 13 ANYAWFFDLDGTLAEIKPHPDQ---------------------------------------VVVPDNILQGLQLLATAND 53 (266)
T ss_pred CCEEEEEecCCCCCCCCCCccc---------------------------------------ccCCHHHHHHHHHHHhCCC
Confidence 3689999999999986544320 1123777777888875 4
Q ss_pred ccEEEecCCcHHHHHHHHHHh
Q 044162 170 FEISVCTLGNREYATRAVKLL 190 (369)
Q Consensus 170 yEi~I~T~g~~~YA~~i~~~l 190 (369)
..++|-|--...-+..+++.+
T Consensus 54 ~~v~i~SGR~~~~~~~~~~~~ 74 (266)
T PRK10187 54 GALALISGRSMVELDALAKPY 74 (266)
T ss_pred CcEEEEeCCCHHHHHHhcCcc
Confidence 667777766666666655433
No 142
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=86.83 E-value=1.6 Score=41.40 Aligned_cols=66 Identities=6% Similarity=-0.088 Sum_probs=37.7
Q ss_pred HHHHHHHHHHhhhcCceEEecc-----cCCCCCh---hHHHHHHhcCCEEEec--c----C-----CCceEEEecCCCcc
Q 044162 303 VRSCLAKIRSRILMGCTILFGD-----DDFEELP---LTWSRAEEMGAICTLV--T----D-----ASVTHVVSSNTQSE 363 (369)
Q Consensus 303 Vr~il~~~r~~VL~g~~ivFSg-----~~p~~~p---~lw~la~~~GA~v~~~--i----~-----~~vTHvVa~~~gT~ 363 (369)
+..+...+++..-..+.+++|+ +.|.+.. -+..|++.+|-....- + + ..+.|=||..++.+
T Consensus 155 ~~~~~~~l~~~~~~~~~~~~s~~~~~eI~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~ 234 (272)
T PRK15126 155 LTRLQIQLNEALGERAHLCFSATDCLEVLPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNAMP 234 (272)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCcEEEeecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCChH
Confidence 3343334433322345666665 4455422 8888999999532111 1 1 24678888888888
Q ss_pred ccccc
Q 044162 364 TFEWA 368 (369)
Q Consensus 364 K~~~a 368 (369)
.++.+
T Consensus 235 ~vK~~ 239 (272)
T PRK15126 235 QLRAE 239 (272)
T ss_pred HHHHh
Confidence 77653
No 143
>PRK10976 putative hydrolase; Provisional
Probab=86.40 E-value=1.6 Score=41.01 Aligned_cols=64 Identities=8% Similarity=-0.082 Sum_probs=35.8
Q ss_pred HHHHHHHHhhhcCceEEecc-----cCCCCCh---hHHHHHHhcCCEEEe-----cc-C-----CCceEEEecCCCcccc
Q 044162 305 SCLAKIRSRILMGCTILFGD-----DDFEELP---LTWSRAEEMGAICTL-----VT-D-----ASVTHVVSSNTQSETF 365 (369)
Q Consensus 305 ~il~~~r~~VL~g~~ivFSg-----~~p~~~p---~lw~la~~~GA~v~~-----~i-~-----~~vTHvVa~~~gT~K~ 365 (369)
.+...+++..-.++.+++|+ +.|.+.. -+..+|+.+|-.... |- + ..+-|=||..++++.+
T Consensus 159 ~~~~~l~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA~~~v 238 (266)
T PRK10976 159 PLEQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNAHQRL 238 (266)
T ss_pred HHHHHHHHHhCCcEEEEEeCCceEEEEcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCCcHHH
Confidence 33334443333456666664 3344322 888899999954211 11 1 2466778888888777
Q ss_pred ccc
Q 044162 366 EWA 368 (369)
Q Consensus 366 ~~a 368 (369)
+.+
T Consensus 239 K~~ 241 (266)
T PRK10976 239 KDL 241 (266)
T ss_pred HHh
Confidence 653
No 144
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=86.39 E-value=1.1 Score=42.75 Aligned_cols=101 Identities=12% Similarity=0.155 Sum_probs=65.6
Q ss_pred EEEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeecc----------cc-----------
Q 044162 151 LLVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITRED----------FK----------- 208 (369)
Q Consensus 151 ~~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~----------~~----------- 208 (369)
-+...-|.+.++++.++ +..-+..+|+....|...-++.|--.|--|.++.+..+. +.
T Consensus 78 ~~~lie~~~~~~i~~lq~~~~~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlf 157 (252)
T PF11019_consen 78 KMELIESDVPNIINSLQNKGIPVIALTARGPNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYDGILF 157 (252)
T ss_pred ceEEcchhHHHHHHHHHHCCCcEEEEcCCChhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeecCeEE
Confidence 34566799999999998 679999999999999998887764444334333210000 00
Q ss_pred -Ccccc------cccccCCCCCcEEEEeCCcccccc----CCCceEEeCccccc
Q 044162 209 -QKERK------YLDLVLGQENSIVIVDDTESVWGG----RVENLITVGSYDFF 251 (369)
Q Consensus 209 -~~~~K------dL~~l~~~~~~vvIvDD~~~~w~~----~~~N~I~I~~y~fF 251 (369)
...-| =|+.++..++.||+|||+.+.-.. ....+|..--|+|-
T Consensus 158 t~~~~KG~~L~~fL~~~~~~pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt 211 (252)
T PF11019_consen 158 TGGQDKGEVLKYFLDKINQSPKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYT 211 (252)
T ss_pred eCCCccHHHHHHHHHHcCCCCCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEc
Confidence 00111 234567789999999999866532 23466666666653
No 145
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=86.27 E-value=0.74 Score=49.34 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=49.5
Q ss_pred hhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCcccccccC
Q 044162 313 RILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFEWAE 369 (369)
Q Consensus 313 ~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~~a~ 369 (369)
..++|..+.|+|..+... .+..+...||+.|..|...++||+||.+.+-+|.+.|+
T Consensus 117 ~~m~~vvlcfTg~rkk~e-~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~a~ 172 (850)
T KOG3524|consen 117 ELMKDVVMCFTGERKKKE-ELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSIAL 172 (850)
T ss_pred hhhcCceeeeeccchhhH-HHHHHHHHhcceeEeeeccCceEEEeecccceEEEEEe
Confidence 356888999999998865 88889999999999999999999999999988887663
No 146
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=86.06 E-value=2.9 Score=40.43 Aligned_cols=81 Identities=14% Similarity=0.003 Sum_probs=49.3
Q ss_pred CccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCc-----cccccc---ccCCCCCcEE
Q 044162 156 RPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQK-----ERKYLD---LVLGQENSIV 226 (369)
Q Consensus 156 RPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~-----~~KdL~---~l~~~~~~vv 226 (369)
=|+..+|++.+. ..+.|++-|.-....-..=++.|--.|--.-++++=|+..... ..|.-. .+...-.-+.
T Consensus 147 lp~al~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv~ 226 (275)
T TIGR01680 147 LPETLKNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIVG 226 (275)
T ss_pred ChHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCceEEE
Confidence 489999999995 7899999998887665555666655552111455556442111 123221 1234456677
Q ss_pred EEeCCccccc
Q 044162 227 IVDDTESVWG 236 (369)
Q Consensus 227 IvDD~~~~w~ 236 (369)
.|+|...-+.
T Consensus 227 ~iGDq~sDl~ 236 (275)
T TIGR01680 227 IIGDQWNDLK 236 (275)
T ss_pred EECCCHHhcc
Confidence 8899865554
No 147
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=85.92 E-value=1.5 Score=40.02 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=17.9
Q ss_pred HHHHHHh-cCccEEEecCCcHHHHHHHHHHhC
Q 044162 161 SFLEEAS-RLFEISVCTLGNREYATRAVKLLD 191 (369)
Q Consensus 161 eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lD 191 (369)
+-|+++. +...+++.|--+...+..+++.++
T Consensus 22 ~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~ 53 (225)
T TIGR01482 22 EAIRKAESVGIPVVLVTGNSVQFARALAKLIG 53 (225)
T ss_pred HHHHHHHHCCCEEEEEcCCchHHHHHHHHHhC
Confidence 3344443 445666666666666666666665
No 148
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=85.09 E-value=1.4 Score=42.59 Aligned_cols=48 Identities=21% Similarity=0.115 Sum_probs=30.7
Q ss_pred ccHHHHHHHHhc-CccEEEecCCcHH----HHHHHHHHhCCCCCcccceEEeecc
Q 044162 157 PFVRSFLEEASR-LFEISVCTLGNRE----YATRAVKLLDPDCKYFNSRIITRED 206 (369)
Q Consensus 157 Pgl~eFL~~ls~-~yEi~I~T~g~~~----YA~~i~~~lDp~~~~f~~Ri~srd~ 206 (369)
||+.+||+.+.+ .-.+++-||++.. |+..+..+..++-. .++|++...
T Consensus 27 pga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~--~~~i~TS~~ 79 (269)
T COG0647 27 PGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVT--PDDIVTSGD 79 (269)
T ss_pred chHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCC--HHHeecHHH
Confidence 899999999974 4788888988754 44455553444322 245664433
No 149
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=84.99 E-value=0.78 Score=43.09 Aligned_cols=53 Identities=15% Similarity=0.141 Sum_probs=35.5
Q ss_pred CCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHhcCc
Q 044162 91 MRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASRLF 170 (369)
Q Consensus 91 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls~~y 170 (369)
.||..|+||+||||+-....|. ..+.=|++.+-|+.|++..
T Consensus 1 ~~~~~l~lD~DGTL~~~~~~p~---------------------------------------~~~~~~~~~~~L~~L~~~~ 41 (244)
T TIGR00685 1 ARKRAFFFDYDGTLSEIVPDPD---------------------------------------AAVVSDRLLTILQKLAARP 41 (244)
T ss_pred CCcEEEEEecCccccCCcCCCc---------------------------------------ccCCCHHHHHHHHHHHhCC
Confidence 3788999999999996443331 0223488999999999876
Q ss_pred cEEEecCCcHHH
Q 044162 171 EISVCTLGNREY 182 (369)
Q Consensus 171 Ei~I~T~g~~~Y 182 (369)
...|+=.+.|.+
T Consensus 42 ~~~v~ivSGR~~ 53 (244)
T TIGR00685 42 HNAIWIISGRKF 53 (244)
T ss_pred CCeEEEEECCCh
Confidence 655433334444
No 150
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=84.97 E-value=1.3 Score=42.43 Aligned_cols=23 Identities=13% Similarity=0.010 Sum_probs=16.4
Q ss_pred ccHHHHHHHHh-cCccEEEecCCc
Q 044162 157 PFVRSFLEEAS-RLFEISVCTLGN 179 (369)
Q Consensus 157 Pgl~eFL~~ls-~~yEi~I~T~g~ 179 (369)
||+.++|+++. +...+++.|+.+
T Consensus 21 ~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 21 PGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred cCHHHHHHHHHHCCCeEEEEeCCC
Confidence 67778887776 456777888743
No 151
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=84.72 E-value=1.5 Score=41.42 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=11.9
Q ss_pred EEEEeCCCceeeec
Q 044162 95 HLVLDLDHTLLHSR 108 (369)
Q Consensus 95 ~LVLDLD~TLIhs~ 108 (369)
.+++|+||||++..
T Consensus 3 ~~~~D~DGtl~~~~ 16 (249)
T TIGR01457 3 GYLIDLDGTMYKGK 16 (249)
T ss_pred EEEEeCCCceEcCC
Confidence 57899999999754
No 152
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=84.10 E-value=2.5 Score=39.76 Aligned_cols=50 Identities=16% Similarity=0.317 Sum_probs=40.7
Q ss_pred EEeCccHHHHHHHHhc--CccEEEecCCcHHHHHHHHHHhCCCCCcccceEEee
Q 044162 153 VKLRPFVRSFLEEASR--LFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITR 204 (369)
Q Consensus 153 vklRPgl~eFL~~ls~--~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~sr 204 (369)
+-.-||+-+-++.+++ .||+.|-+.++.-+.+.+++..+-. .+|. +|+|.
T Consensus 83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~-d~F~-~IfTN 134 (256)
T KOG3120|consen 83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIH-DLFS-EIFTN 134 (256)
T ss_pred CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHH-HHHH-HHhcC
Confidence 4556999999988873 4899999999999999999998876 4674 56654
No 153
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=83.46 E-value=2.4 Score=38.75 Aligned_cols=41 Identities=15% Similarity=0.167 Sum_probs=36.6
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPD 193 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~ 193 (369)
+++|||.++|.+.+. +.-.++|-++|...|..+++..|--.
T Consensus 72 i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgk 113 (220)
T COG4359 72 IKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGK 113 (220)
T ss_pred cccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccc
Confidence 889999999999997 67889999999999999999876533
No 154
>PLN02151 trehalose-phosphatase
Probab=83.25 E-value=2.2 Score=42.86 Aligned_cols=63 Identities=17% Similarity=0.126 Sum_probs=47.7
Q ss_pred hhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHH
Q 044162 87 NLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEA 166 (369)
Q Consensus 87 ~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~l 166 (369)
.+.+.+++.|+||+||||+--...|. -+..-|.+.+-|+.+
T Consensus 92 ~~~~~~~~ll~lDyDGTL~PIv~~P~---------------------------------------~A~~~~~~~~aL~~L 132 (354)
T PLN02151 92 HKSEGKQIVMFLDYDGTLSPIVDDPD---------------------------------------RAFMSKKMRNTVRKL 132 (354)
T ss_pred HhhcCCceEEEEecCccCCCCCCCcc---------------------------------------cccCCHHHHHHHHHH
Confidence 34567899999999999994332221 133458999999999
Q ss_pred hcCccEEEecCCcHHHHHHHHH
Q 044162 167 SRLFEISVCTLGNREYATRAVK 188 (369)
Q Consensus 167 s~~yEi~I~T~g~~~YA~~i~~ 188 (369)
++.+.++|-|--...-.+.++.
T Consensus 133 a~~~~vaIvSGR~~~~l~~~~~ 154 (354)
T PLN02151 133 AKCFPTAIVSGRCREKVSSFVK 154 (354)
T ss_pred hcCCCEEEEECCCHHHHHHHcC
Confidence 9999999999887777776653
No 155
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=82.43 E-value=1.5 Score=41.08 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=21.6
Q ss_pred ccHHHHHHHHh-cCccEEEecCCc----HHHHHHHHHH
Q 044162 157 PFVRSFLEEAS-RLFEISVCTLGN----REYATRAVKL 189 (369)
Q Consensus 157 Pgl~eFL~~ls-~~yEi~I~T~g~----~~YA~~i~~~ 189 (369)
|++.++|+.+. +.+.+.+-|+++ ..+++.+.+.
T Consensus 17 ~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~ 54 (236)
T TIGR01460 17 PGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSL 54 (236)
T ss_pred cCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 57777787776 457777777554 5566556553
No 156
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=82.38 E-value=2.1 Score=40.09 Aligned_cols=16 Identities=50% Similarity=0.688 Sum_probs=13.1
Q ss_pred ceEEEEeCCCceeeec
Q 044162 93 KLHLVLDLDHTLLHSR 108 (369)
Q Consensus 93 Kl~LVLDLD~TLIhs~ 108 (369)
++.++.||||||+++.
T Consensus 1 ~~li~tDlDGTLl~~~ 16 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHT 16 (249)
T ss_pred CeEEEEcCCCcCcCCC
Confidence 4678999999999743
No 157
>PLN02423 phosphomannomutase
Probab=82.08 E-value=2.9 Score=39.47 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=14.3
Q ss_pred CCceEEEEeCCCceeeec
Q 044162 91 MRKLHLVLDLDHTLLHSR 108 (369)
Q Consensus 91 ~~Kl~LVLDLD~TLIhs~ 108 (369)
..|..+++||||||+++.
T Consensus 5 ~~~~i~~~D~DGTLl~~~ 22 (245)
T PLN02423 5 KPGVIALFDVDGTLTAPR 22 (245)
T ss_pred ccceEEEEeccCCCcCCC
Confidence 456677799999999764
No 158
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=81.99 E-value=2.4 Score=37.99 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=41.9
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEE
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRII 202 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~ 202 (369)
.+++||+.++|+.+. +.+.++|-|++...+++.+++.++-+. +|+.++.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~-~~~~~l~ 135 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDN-AIGTRLE 135 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcc-eEecceE
Confidence 468999999999986 579999999999999999999988764 6766554
No 159
>PLN03017 trehalose-phosphatase
Probab=81.72 E-value=2.8 Score=42.26 Aligned_cols=63 Identities=16% Similarity=0.080 Sum_probs=45.4
Q ss_pred hhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHH
Q 044162 86 KNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEE 165 (369)
Q Consensus 86 ~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ 165 (369)
..+.+.+++.|+||+||||+--...+. ....-|.+.+-|++
T Consensus 104 ~~~~~~k~~llflD~DGTL~Piv~~p~---------------------------------------~a~i~~~~~~aL~~ 144 (366)
T PLN03017 104 MEASRGKQIVMFLDYDGTLSPIVDDPD---------------------------------------KAFMSSKMRRTVKK 144 (366)
T ss_pred HHHhcCCCeEEEEecCCcCcCCcCCcc---------------------------------------cccCCHHHHHHHHH
Confidence 334678999999999999993322221 01234778888999
Q ss_pred HhcCccEEEecCCcHHHHHHHH
Q 044162 166 ASRLFEISVCTLGNREYATRAV 187 (369)
Q Consensus 166 ls~~yEi~I~T~g~~~YA~~i~ 187 (369)
+++.+.++|-|--...-+..+.
T Consensus 145 La~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 145 LAKCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred HhcCCcEEEEeCCCHHHHHHhh
Confidence 9988999999877777766664
No 160
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=81.32 E-value=0.81 Score=41.17 Aligned_cols=15 Identities=33% Similarity=0.459 Sum_probs=13.2
Q ss_pred EEEEeCCCceeeecc
Q 044162 95 HLVLDLDHTLLHSRL 109 (369)
Q Consensus 95 ~LVLDLD~TLIhs~~ 109 (369)
.+++||||||++|..
T Consensus 2 ~viFD~DGTLiDs~~ 16 (197)
T TIGR01548 2 ALVLDMDGVMADVSQ 16 (197)
T ss_pred ceEEecCceEEechH
Confidence 479999999999874
No 161
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=81.16 E-value=1.2 Score=48.95 Aligned_cols=55 Identities=18% Similarity=0.108 Sum_probs=46.9
Q ss_pred HhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEecCCCccccc
Q 044162 312 SRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSSNTQSETFE 366 (369)
Q Consensus 312 ~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~~~gT~K~~ 366 (369)
...++|+.+.-.++-|.....+.+.+..+||....++++.|||+|+....+.|.-
T Consensus 7 ~~~~~~v~~~~t~i~p~~~~~l~~~~~~~Gg~~~~~~t~~~thli~~~~~s~~~~ 61 (811)
T KOG1929|consen 7 SKPMSGVTFSPTGINPIKREELSKKFIKLGGIDFKDFTPSVTHLIVGSVTSSKYA 61 (811)
T ss_pred CcccCCceeccCcCCHHHHHHHHHHHHhcCceeeeccCCcCceeecccccccchh
Confidence 3567788887777777666688899999999999999999999999999888763
No 162
>PLN02580 trehalose-phosphatase
Probab=80.67 E-value=3.3 Score=41.98 Aligned_cols=64 Identities=20% Similarity=0.202 Sum_probs=49.5
Q ss_pred hhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHH
Q 044162 86 KNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEE 165 (369)
Q Consensus 86 ~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ 165 (369)
..+.+.+++.|+||.||||.--...|. -+..=|++.+-|+.
T Consensus 112 ~~~~~~k~~~LfLDyDGTLaPIv~~Pd---------------------------------------~A~~s~~~~~aL~~ 152 (384)
T PLN02580 112 ANFAKGKKIALFLDYDGTLSPIVDDPD---------------------------------------RALMSDAMRSAVKN 152 (384)
T ss_pred HHHhhcCCeEEEEecCCccCCCCCCcc---------------------------------------cccCCHHHHHHHHH
Confidence 345677899999999999985443331 13345899999999
Q ss_pred HhcCccEEEecCCcHHHHHHHHH
Q 044162 166 ASRLFEISVCTLGNREYATRAVK 188 (369)
Q Consensus 166 ls~~yEi~I~T~g~~~YA~~i~~ 188 (369)
+++.+.++|-|--.+.-.+..+.
T Consensus 153 La~~~~VAIVSGR~~~~L~~~l~ 175 (384)
T PLN02580 153 VAKYFPTAIISGRSRDKVYELVG 175 (384)
T ss_pred HhhCCCEEEEeCCCHHHHHHHhC
Confidence 99999999999888887776664
No 163
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=79.95 E-value=4.7 Score=39.52 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=22.8
Q ss_pred HHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162 160 RSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC 194 (369)
Q Consensus 160 ~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~ 194 (369)
.+-|+.+. +...+++.|.-+..=...+.+.|..+.
T Consensus 24 ~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~~ 59 (302)
T PRK12702 24 RQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLEH 59 (302)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCC
Confidence 34455554 557778888777776667777776553
No 164
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=79.37 E-value=3.4 Score=36.85 Aligned_cols=79 Identities=20% Similarity=0.118 Sum_probs=56.4
Q ss_pred eEEEEeCccHHHHHHHHhcC-ccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC-c--ccccccccCCCCCcE
Q 044162 150 VLLVKLRPFVRSFLEEASRL-FEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ-K--ERKYLDLVLGQENSI 225 (369)
Q Consensus 150 ~~~vklRPgl~eFL~~ls~~-yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~-~--~~KdL~~l~~~~~~v 225 (369)
...-.+||++.++|+++.+. +.++|.|..+...|..+++.++... ..++++..+.. . +.+=++.++.+.+.|
T Consensus 123 ~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~----~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v 198 (215)
T PF00702_consen 123 GLRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD----SIVFARVIGKPEPKIFLRIIKELQVKPGEV 198 (215)
T ss_dssp EEEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS----EEEEESHETTTHHHHHHHHHHHHTCTGGGE
T ss_pred eecCcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc----ccccccccccccchhHHHHHHHHhcCCCEE
Confidence 45567899999999999865 8999999999999999999998743 22333221111 1 122334455566799
Q ss_pred EEEeCCc
Q 044162 226 VIVDDTE 232 (369)
Q Consensus 226 vIvDD~~ 232 (369)
++|-|..
T Consensus 199 ~~vGDg~ 205 (215)
T PF00702_consen 199 AMVGDGV 205 (215)
T ss_dssp EEEESSG
T ss_pred EEEccCH
Confidence 9999876
No 165
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=79.07 E-value=3.8 Score=39.51 Aligned_cols=67 Identities=18% Similarity=0.065 Sum_probs=51.3
Q ss_pred hhhhhhhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHH
Q 044162 83 RNTKNLLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSF 162 (369)
Q Consensus 83 ~~~~~ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eF 162 (369)
.........+|..++||.||||.+-...|.. ...=|++.+-
T Consensus 8 ~~~~~~~~a~~~~~~lDyDGTl~~i~~~p~~---------------------------------------a~~~~~l~~l 48 (266)
T COG1877 8 QLLEPYLNARKRLLFLDYDGTLTEIVPHPEA---------------------------------------AVPDDRLLSL 48 (266)
T ss_pred hhccccccccceEEEEeccccccccccCccc---------------------------------------cCCCHHHHHH
Confidence 3455667899999999999999988766521 1123788899
Q ss_pred HHHHhcCcc--EEEecCCcHHHHHHHHH
Q 044162 163 LEEASRLFE--ISVCTLGNREYATRAVK 188 (369)
Q Consensus 163 L~~ls~~yE--i~I~T~g~~~YA~~i~~ 188 (369)
|+.|+..+. ++|.|--+..-.+..+.
T Consensus 49 L~~Las~~~~~v~iiSGR~~~~l~~~~~ 76 (266)
T COG1877 49 LQDLASDPRNVVAIISGRSLAELERLFG 76 (266)
T ss_pred HHHHHhcCCCeEEEEeCCCHHHHHHhcC
Confidence 999998888 88888777777777665
No 166
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=78.50 E-value=2.9 Score=41.83 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=43.8
Q ss_pred eEEEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHh-C-----C-CCCcccceEEe
Q 044162 150 VLLVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLL-D-----P-DCKYFNSRIIT 203 (369)
Q Consensus 150 ~~~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~l-D-----p-~~~~f~~Ri~s 203 (369)
.-|+.+-||+.++|+.+. ....+.|-|++...|++.+++.+ + + -..+|. -|++
T Consensus 180 ~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD-~IIt 240 (343)
T TIGR02244 180 EKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFD-VVIV 240 (343)
T ss_pred HHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCc-EEEe
Confidence 567888999999999997 66899999999999999999997 6 2 245773 4553
No 167
>PTZ00174 phosphomannomutase; Provisional
Probab=78.19 E-value=5.1 Score=37.60 Aligned_cols=17 Identities=41% Similarity=0.495 Sum_probs=14.0
Q ss_pred ceEEEEeCCCceeeecc
Q 044162 93 KLHLVLDLDHTLLHSRL 109 (369)
Q Consensus 93 Kl~LVLDLD~TLIhs~~ 109 (369)
...+++||||||+++..
T Consensus 5 ~klia~DlDGTLL~~~~ 21 (247)
T PTZ00174 5 KTILLFDVDGTLTKPRN 21 (247)
T ss_pred CeEEEEECcCCCcCCCC
Confidence 45789999999998754
No 168
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=77.61 E-value=5.3 Score=43.43 Aligned_cols=32 Identities=9% Similarity=0.012 Sum_probs=22.4
Q ss_pred HHHHHh-cCccEEEecCCcHHHHHHHHHHhCCC
Q 044162 162 FLEEAS-RLFEISVCTLGNREYATRAVKLLDPD 193 (369)
Q Consensus 162 FL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~ 193 (369)
-|+.+. +...++|.|.-+...+..+++.|+.+
T Consensus 441 AL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~ 473 (694)
T PRK14502 441 ALRLLKDKELPLVFCSAKTMGEQDLYRNELGIK 473 (694)
T ss_pred HHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence 344554 55778888888888888888777654
No 169
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=77.41 E-value=1.2 Score=39.59 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=12.9
Q ss_pred EEEEeCCCceeeecc
Q 044162 95 HLVLDLDHTLLHSRL 109 (369)
Q Consensus 95 ~LVLDLD~TLIhs~~ 109 (369)
.+++||||||+.+..
T Consensus 2 ~viFDlDGTL~ds~~ 16 (184)
T TIGR01993 2 VWFFDLDNTLYPHSA 16 (184)
T ss_pred eEEEeCCCCCCCCcc
Confidence 479999999998864
No 170
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=76.93 E-value=2.8 Score=37.47 Aligned_cols=77 Identities=9% Similarity=0.022 Sum_probs=51.0
Q ss_pred hcCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeCCccccccCCCceEEeC
Q 044162 167 SRLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDDTESVWGGRVENLITVG 246 (369)
Q Consensus 167 s~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD~~~~w~~~~~N~I~I~ 246 (369)
.+.+.+.|.|+.+..+++.+++.+.-. .+|.. + . .....+..-++.++-+.+.++.|.|+..-...-...++.+.
T Consensus 48 ~~Gi~laIiT~k~~~~~~~~l~~lgi~-~~f~~-~--k-pkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~a 122 (169)
T TIGR02726 48 LCGIDVAIITSKKSGAVRHRAEELKIK-RFHEG-I--K-KKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVA 122 (169)
T ss_pred HCCCEEEEEECCCcHHHHHHHHHCCCc-EEEec-C--C-CCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEE
Confidence 367999999999999999999999876 45642 1 1 00111222334556677889999998855544344566665
Q ss_pred cc
Q 044162 247 SY 248 (369)
Q Consensus 247 ~y 248 (369)
+-
T Consensus 123 m~ 124 (169)
T TIGR02726 123 VG 124 (169)
T ss_pred Cc
Confidence 54
No 171
>PRK11587 putative phosphatase; Provisional
Probab=75.55 E-value=1.4 Score=40.37 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=13.9
Q ss_pred eEEEEeCCCceeeecc
Q 044162 94 LHLVLDLDHTLLHSRL 109 (369)
Q Consensus 94 l~LVLDLD~TLIhs~~ 109 (369)
..+++||||||++|..
T Consensus 4 k~viFDlDGTL~Ds~~ 19 (218)
T PRK11587 4 KGFLFDLDGTLVDSLP 19 (218)
T ss_pred CEEEEcCCCCcCcCHH
Confidence 4689999999999874
No 172
>PHA02597 30.2 hypothetical protein; Provisional
Probab=73.97 E-value=1.8 Score=38.70 Aligned_cols=15 Identities=27% Similarity=0.368 Sum_probs=12.8
Q ss_pred eEEEEeCCCceeeec
Q 044162 94 LHLVLDLDHTLLHSR 108 (369)
Q Consensus 94 l~LVLDLD~TLIhs~ 108 (369)
..+++||||||+++.
T Consensus 3 k~viFDlDGTLiD~~ 17 (197)
T PHA02597 3 PTILTDVDGVLLSWQ 17 (197)
T ss_pred cEEEEecCCceEchh
Confidence 468999999999954
No 173
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=73.96 E-value=5.3 Score=35.01 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=46.7
Q ss_pred EEeCccHHHHHHHHhcCccEEEecCCcHHH--HHHHHHH-------hCCCCCcccceEEeeccccCcccccccccCCCCC
Q 044162 153 VKLRPFVRSFLEEASRLFEISVCTLGNREY--ATRAVKL-------LDPDCKYFNSRIITREDFKQKERKYLDLVLGQEN 223 (369)
Q Consensus 153 vklRPgl~eFL~~ls~~yEi~I~T~g~~~Y--A~~i~~~-------lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~ 223 (369)
...-||.++-++++-+.|+++|-|++..-| ...-.+. |+++.- ++ |+ -|++- +
T Consensus 67 L~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn~-----vf----Cg---nKniv------k 128 (180)
T COG4502 67 LGVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQNI-----VF----CG---NKNIV------K 128 (180)
T ss_pred cCccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHHHHHCCCCChhhE-----EE----ec---CCCeE------E
Confidence 566799999999999999999999984322 2222222 344432 22 11 12221 1
Q ss_pred cEEEEeCCccccccCCCceEEeC
Q 044162 224 SIVIVDDTESVWGGRVENLITVG 246 (369)
Q Consensus 224 ~vvIvDD~~~~w~~~~~N~I~I~ 246 (369)
.=++|||.|........|-|...
T Consensus 129 aDilIDDnp~nLE~F~G~kIlFd 151 (180)
T COG4502 129 ADILIDDNPLNLENFKGNKILFD 151 (180)
T ss_pred eeEEecCCchhhhhccCceEEEe
Confidence 23688998877766666655543
No 174
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=73.84 E-value=10 Score=40.36 Aligned_cols=76 Identities=21% Similarity=0.169 Sum_probs=53.0
Q ss_pred EEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEEEeC
Q 044162 152 LVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVIVDD 230 (369)
Q Consensus 152 ~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvIvDD 230 (369)
.-.+|||+.++++++. ..++++|-|...+.+|+.+++.++-+ +|.. +. .++ ....++ .+....+.+++|-|
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~--~~~~-~~-p~~-K~~~v~---~l~~~~~~v~~VGD 474 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN--VRAE-VL-PDD-KAALIK---ELQEKGRVVAMVGD 474 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc--EEcc-CC-hHH-HHHHHH---HHHHcCCEEEEEeC
Confidence 4568999999999997 56999999999999999999998764 4421 11 110 011122 23335578999988
Q ss_pred Ccccc
Q 044162 231 TESVW 235 (369)
Q Consensus 231 ~~~~w 235 (369)
...=-
T Consensus 475 g~nD~ 479 (562)
T TIGR01511 475 GINDA 479 (562)
T ss_pred CCccH
Confidence 76444
No 175
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=73.59 E-value=1.8 Score=39.01 Aligned_cols=77 Identities=22% Similarity=0.100 Sum_probs=42.8
Q ss_pred EEeCccHHHHHHHHhcC-ccEEEecCCcHH-H---HHHHHHHhCCC-CCccc-ceEEeeccccCcccccccccCCCCCcE
Q 044162 153 VKLRPFVRSFLEEASRL-FEISVCTLGNRE-Y---ATRAVKLLDPD-CKYFN-SRIITREDFKQKERKYLDLVLGQENSI 225 (369)
Q Consensus 153 vklRPgl~eFL~~ls~~-yEi~I~T~g~~~-Y---A~~i~~~lDp~-~~~f~-~Ri~srd~~~~~~~KdL~~l~~~~~~v 225 (369)
.+.=||+.|.|++|.+. +++++-|+.... | +..-.+.|+-+ +.++. +.+++. -|. .+..|
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~-------~K~--~v~~D---- 138 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTG-------DKT--LVGGD---- 138 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEES-------SGG--GC--S----
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEec-------CCC--eEecc----
Confidence 55669999999999976 578877776654 1 33334455433 11232 333331 243 23444
Q ss_pred EEEeCCccccccCCCce
Q 044162 226 VIVDDTESVWGGRVENL 242 (369)
Q Consensus 226 vIvDD~~~~w~~~~~N~ 242 (369)
++|||++.........+
T Consensus 139 vlIDD~~~n~~~~~~~g 155 (191)
T PF06941_consen 139 VLIDDRPHNLEQFANAG 155 (191)
T ss_dssp EEEESSSHHHSS-SSES
T ss_pred EEecCChHHHHhccCCC
Confidence 89999998886544455
No 176
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=73.16 E-value=1.3 Score=40.08 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=12.4
Q ss_pred EEEeCCCceeeecc
Q 044162 96 LVLDLDHTLLHSRL 109 (369)
Q Consensus 96 LVLDLD~TLIhs~~ 109 (369)
+++||||||+.|..
T Consensus 1 iiFDlDGTL~Ds~~ 14 (205)
T TIGR01454 1 VVFDLDGVLVDSFA 14 (205)
T ss_pred CeecCcCccccCHH
Confidence 58999999999875
No 177
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=72.91 E-value=1.9 Score=39.21 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=14.2
Q ss_pred eEEEEeCCCceeeeccC
Q 044162 94 LHLVLDLDHTLLHSRLI 110 (369)
Q Consensus 94 l~LVLDLD~TLIhs~~~ 110 (369)
..+++||||||+++...
T Consensus 3 ~~viFDlDGTL~ds~~~ 19 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSGL 19 (221)
T ss_pred eEEEEeCCCCCcCCCCc
Confidence 36899999999998753
No 178
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=72.77 E-value=2.3 Score=38.20 Aligned_cols=15 Identities=27% Similarity=0.215 Sum_probs=13.1
Q ss_pred EEEEeCCCceeeecc
Q 044162 95 HLVLDLDHTLLHSRL 109 (369)
Q Consensus 95 ~LVLDLD~TLIhs~~ 109 (369)
.+++||||||+.+..
T Consensus 2 ~viFDlDGTL~d~~~ 16 (203)
T TIGR02252 2 LITFDAVGTLLALKE 16 (203)
T ss_pred eEEEecCCceeeeCC
Confidence 589999999999864
No 179
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=72.33 E-value=1.5 Score=37.43 Aligned_cols=15 Identities=33% Similarity=0.651 Sum_probs=12.9
Q ss_pred EEEEeCCCceeeecc
Q 044162 95 HLVLDLDHTLLHSRL 109 (369)
Q Consensus 95 ~LVLDLD~TLIhs~~ 109 (369)
++++|+||||+++..
T Consensus 1 ~iifD~DGTL~d~~~ 15 (154)
T TIGR01549 1 AILFDIDGTLVDSSF 15 (154)
T ss_pred CeEecCCCcccccHH
Confidence 479999999999863
No 180
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=71.83 E-value=2.2 Score=38.77 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=13.5
Q ss_pred eEEEEeCCCceeeecc
Q 044162 94 LHLVLDLDHTLLHSRL 109 (369)
Q Consensus 94 l~LVLDLD~TLIhs~~ 109 (369)
..+++||||||+++..
T Consensus 2 k~iiFD~DGTL~ds~~ 17 (220)
T TIGR03351 2 SLVVLDMAGTTVDEDG 17 (220)
T ss_pred cEEEEecCCCeeccCc
Confidence 3578999999999864
No 181
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=70.97 E-value=2 Score=37.71 Aligned_cols=15 Identities=13% Similarity=0.456 Sum_probs=13.3
Q ss_pred EEEEeCCCceeeecc
Q 044162 95 HLVLDLDHTLLHSRL 109 (369)
Q Consensus 95 ~LVLDLD~TLIhs~~ 109 (369)
.+++|+||||+.+..
T Consensus 3 ~iiFD~DGTL~ds~~ 17 (185)
T TIGR02009 3 AVIFDMDGVIVDTAP 17 (185)
T ss_pred eEEEcCCCcccCChH
Confidence 579999999999874
No 182
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=70.45 E-value=1.9 Score=37.79 Aligned_cols=15 Identities=20% Similarity=0.403 Sum_probs=13.0
Q ss_pred EEEEeCCCceeeecc
Q 044162 95 HLVLDLDHTLLHSRL 109 (369)
Q Consensus 95 ~LVLDLD~TLIhs~~ 109 (369)
.+++|+||||+++..
T Consensus 1 ~iiFD~DGTL~ds~~ 15 (185)
T TIGR01990 1 AVIFDLDGVITDTAE 15 (185)
T ss_pred CeEEcCCCccccChH
Confidence 379999999999875
No 183
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=70.44 E-value=4 Score=38.30 Aligned_cols=37 Identities=16% Similarity=-0.021 Sum_probs=26.6
Q ss_pred eCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhC
Q 044162 155 LRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLD 191 (369)
Q Consensus 155 lRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lD 191 (369)
.=||..+|++.+. ..++|++-|.-....-+.-++.|.
T Consensus 116 aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~ 153 (229)
T PF03767_consen 116 AIPGALELYNYARSRGVKVFFITGRPESQREATEKNLK 153 (229)
T ss_dssp EETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHH
Confidence 3489999999997 679999999876654444444443
No 184
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=70.28 E-value=2 Score=40.31 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=14.0
Q ss_pred eEEEEeCCCceeeecc
Q 044162 94 LHLVLDLDHTLLHSRL 109 (369)
Q Consensus 94 l~LVLDLD~TLIhs~~ 109 (369)
..++|||||||++|..
T Consensus 23 k~viFDlDGTLiDs~~ 38 (248)
T PLN02770 23 EAVLFDVDGTLCDSDP 38 (248)
T ss_pred CEEEEcCCCccCcCHH
Confidence 4689999999999874
No 185
>PRK11590 hypothetical protein; Provisional
Probab=69.19 E-value=6.9 Score=35.76 Aligned_cols=39 Identities=13% Similarity=-0.056 Sum_probs=34.6
Q ss_pred EEeCccHHHHH-HHHh-cCccEEEecCCcHHHHHHHHHHhC
Q 044162 153 VKLRPFVRSFL-EEAS-RLFEISVCTLGNREYATRAVKLLD 191 (369)
Q Consensus 153 vklRPgl~eFL-~~ls-~~yEi~I~T~g~~~YA~~i~~~lD 191 (369)
+.++||+.+.| +.+. ..+.++|-|++.+.|++++++.+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 56799999999 5676 689999999999999999998866
No 186
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=69.01 E-value=1.8 Score=39.02 Aligned_cols=14 Identities=43% Similarity=0.610 Sum_probs=12.0
Q ss_pred EEEeCCCceeeecc
Q 044162 96 LVLDLDHTLLHSRL 109 (369)
Q Consensus 96 LVLDLD~TLIhs~~ 109 (369)
+|+|+||||+.|..
T Consensus 1 viFD~DGTL~Ds~~ 14 (213)
T TIGR01449 1 VLFDLDGTLVDSAP 14 (213)
T ss_pred CeecCCCccccCHH
Confidence 58999999998764
No 187
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=68.96 E-value=2.2 Score=37.23 Aligned_cols=14 Identities=29% Similarity=0.344 Sum_probs=12.4
Q ss_pred EEEeCCCceeeecc
Q 044162 96 LVLDLDHTLLHSRL 109 (369)
Q Consensus 96 LVLDLD~TLIhs~~ 109 (369)
+++||||||+.+..
T Consensus 2 viFD~DGTL~D~~~ 15 (175)
T TIGR01493 2 MVFDVYGTLVDVHG 15 (175)
T ss_pred eEEecCCcCcccHH
Confidence 79999999999874
No 188
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=67.99 E-value=2.8 Score=39.74 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=13.4
Q ss_pred eEEEEeCCCceeeec
Q 044162 94 LHLVLDLDHTLLHSR 108 (369)
Q Consensus 94 l~LVLDLD~TLIhs~ 108 (369)
..++|||||||+++.
T Consensus 5 k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 5 QAVIFDWAGTTVDFG 19 (267)
T ss_pred EEEEEcCCCCeecCC
Confidence 478999999999985
No 189
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=66.62 E-value=3.5 Score=38.56 Aligned_cols=16 Identities=13% Similarity=0.067 Sum_probs=13.5
Q ss_pred eEEEEeCCCceeeecc
Q 044162 94 LHLVLDLDHTLLHSRL 109 (369)
Q Consensus 94 l~LVLDLD~TLIhs~~ 109 (369)
..+++|+||||+.+..
T Consensus 3 k~viFD~DGTLiDs~~ 18 (253)
T TIGR01422 3 EAVIFDWAGTTVDFGS 18 (253)
T ss_pred eEEEEeCCCCeecCCC
Confidence 3689999999999853
No 190
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=66.34 E-value=2.6 Score=36.69 Aligned_cols=15 Identities=27% Similarity=0.516 Sum_probs=12.9
Q ss_pred EEEEeCCCceeeecc
Q 044162 95 HLVLDLDHTLLHSRL 109 (369)
Q Consensus 95 ~LVLDLD~TLIhs~~ 109 (369)
.+++||||||+++..
T Consensus 1 ~vlFDlDgtLv~~~~ 15 (183)
T TIGR01509 1 AILFDLDGVLVDTSS 15 (183)
T ss_pred CeeeccCCceechHH
Confidence 379999999999864
No 191
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=66.28 E-value=9.1 Score=41.96 Aligned_cols=61 Identities=18% Similarity=0.137 Sum_probs=42.5
Q ss_pred hcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHhc
Q 044162 89 LRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASR 168 (369)
Q Consensus 89 l~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls~ 168 (369)
...++..+++|+||||+.....+.. ...-|.+.+-|+.+++
T Consensus 488 ~~~~~rLi~~D~DGTL~~~~~~~~~---------------------------------------~~~~~~~~~~L~~L~~ 528 (726)
T PRK14501 488 RAASRRLLLLDYDGTLVPFAPDPEL---------------------------------------AVPDKELRDLLRRLAA 528 (726)
T ss_pred HhccceEEEEecCccccCCCCCccc---------------------------------------CCCCHHHHHHHHHHHc
Confidence 3567889999999999964332210 1124677888888886
Q ss_pred --CccEEEecCCcHHHHHHHHH
Q 044162 169 --LFEISVCTLGNREYATRAVK 188 (369)
Q Consensus 169 --~yEi~I~T~g~~~YA~~i~~ 188 (369)
...++|-|.-+....+..+.
T Consensus 529 d~g~~V~ivSGR~~~~l~~~~~ 550 (726)
T PRK14501 529 DPNTDVAIISGRDRDTLERWFG 550 (726)
T ss_pred CCCCeEEEEeCCCHHHHHHHhC
Confidence 67788888877776666554
No 192
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=66.10 E-value=2.9 Score=35.55 Aligned_cols=14 Identities=36% Similarity=0.655 Sum_probs=12.3
Q ss_pred EEEeCCCceeeecc
Q 044162 96 LVLDLDHTLLHSRL 109 (369)
Q Consensus 96 LVLDLD~TLIhs~~ 109 (369)
++||+||||+++..
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 68999999998765
No 193
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=66.03 E-value=8.3 Score=35.48 Aligned_cols=37 Identities=16% Similarity=-0.029 Sum_probs=33.3
Q ss_pred EEeCccHHHHHH-HHh-cCccEEEecCCcHHHHHHHHHH
Q 044162 153 VKLRPFVRSFLE-EAS-RLFEISVCTLGNREYATRAVKL 189 (369)
Q Consensus 153 vklRPgl~eFL~-~ls-~~yEi~I~T~g~~~YA~~i~~~ 189 (369)
+.++||+.+.|+ .+. +.+.++|-|++...|++++++.
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHh
Confidence 367999999996 777 6999999999999999999976
No 194
>PRK11590 hypothetical protein; Provisional
Probab=66.01 E-value=3.3 Score=37.85 Aligned_cols=16 Identities=31% Similarity=0.434 Sum_probs=13.0
Q ss_pred CceEEEEeCCCceeee
Q 044162 92 RKLHLVLDLDHTLLHS 107 (369)
Q Consensus 92 ~Kl~LVLDLD~TLIhs 107 (369)
.+..+++||||||++.
T Consensus 5 ~~k~~iFD~DGTL~~~ 20 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQ 20 (211)
T ss_pred cceEEEEecCCCCccc
Confidence 4558999999999943
No 195
>PLN02382 probable sucrose-phosphatase
Probab=65.92 E-value=3.2 Score=42.44 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=19.3
Q ss_pred hhhhcCCceEEEEeCCCceeeec
Q 044162 86 KNLLRMRKLHLVLDLDHTLLHSR 108 (369)
Q Consensus 86 ~~ll~~~Kl~LVLDLD~TLIhs~ 108 (369)
.+|-...++.|+.||||||+...
T Consensus 2 ~~~~~~~~~lI~sDLDGTLL~~~ 24 (413)
T PLN02382 2 DRLSGSPRLMIVSDLDHTMVDHH 24 (413)
T ss_pred CcccCCCCEEEEEcCCCcCcCCC
Confidence 35667889999999999999653
No 196
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=65.76 E-value=18 Score=34.12 Aligned_cols=30 Identities=13% Similarity=0.015 Sum_probs=23.5
Q ss_pred hcCccEEEecCCcHHHHHHHHHHhCCCCCc
Q 044162 167 SRLFEISVCTLGNREYATRAVKLLDPDCKY 196 (369)
Q Consensus 167 s~~yEi~I~T~g~~~YA~~i~~~lDp~~~~ 196 (369)
-..|+|+..|+-++.=-...-+.|+-.|..
T Consensus 37 d~G~~Vi~~SSKT~aE~~~l~~~l~v~~~p 66 (274)
T COG3769 37 DAGVPVILCSSKTRAEMLYLQKSLGVQGLP 66 (274)
T ss_pred HcCCeEEEeccchHHHHHHHHHhcCCCCCc
Confidence 368999999988887777777888887643
No 197
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=65.48 E-value=3.2 Score=38.68 Aligned_cols=16 Identities=44% Similarity=0.565 Sum_probs=13.7
Q ss_pred eEEEEeCCCceeeecc
Q 044162 94 LHLVLDLDHTLLHSRL 109 (369)
Q Consensus 94 l~LVLDLD~TLIhs~~ 109 (369)
..+++||||||+++..
T Consensus 11 k~iiFDlDGTL~D~~~ 26 (238)
T PRK10748 11 SALTFDLDDTLYDNRP 26 (238)
T ss_pred eeEEEcCcccccCChH
Confidence 3689999999999864
No 198
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=64.43 E-value=8 Score=40.38 Aligned_cols=48 Identities=13% Similarity=0.162 Sum_probs=39.3
Q ss_pred HhhhcCceEEecccCCCCChhHHHHHHhcCCEEEec----------cCCCceEEEecCCC
Q 044162 312 SRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLV----------TDASVTHVVSSNTQ 361 (369)
Q Consensus 312 ~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~----------i~~~vTHvVa~~~g 361 (369)
+..++|+++..|+-+|.. .|.-++.+||+.|+-+ .|..+||=|+-+++
T Consensus 325 kslF~glkFfl~reVPre--sL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~ 382 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREVPRE--SLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPG 382 (570)
T ss_pred HHHhhcceeeeeccCchH--HHHHHHHHcCCceecCccCCCCcccccccceeeeeecccC
Confidence 467999999999988754 7888999999999877 24568999998765
No 199
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=63.99 E-value=3.3 Score=37.04 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=13.2
Q ss_pred EEEEeCCCceeeecc
Q 044162 95 HLVLDLDHTLLHSRL 109 (369)
Q Consensus 95 ~LVLDLD~TLIhs~~ 109 (369)
.++||+||||+++..
T Consensus 3 ~viFD~dgTLiD~~~ 17 (198)
T TIGR01428 3 ALVFDVYGTLFDVHS 17 (198)
T ss_pred EEEEeCCCcCccHHH
Confidence 589999999999774
No 200
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=63.70 E-value=3.4 Score=37.44 Aligned_cols=16 Identities=38% Similarity=0.436 Sum_probs=13.5
Q ss_pred eEEEEeCCCceeeecc
Q 044162 94 LHLVLDLDHTLLHSRL 109 (369)
Q Consensus 94 l~LVLDLD~TLIhs~~ 109 (369)
..+++|+||||+++..
T Consensus 7 ~~iiFD~DGTL~d~~~ 22 (226)
T PRK13222 7 RAVAFDLDGTLVDSAP 22 (226)
T ss_pred cEEEEcCCcccccCHH
Confidence 3789999999998764
No 201
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=63.62 E-value=3.5 Score=37.24 Aligned_cols=15 Identities=40% Similarity=0.634 Sum_probs=13.4
Q ss_pred EEEEeCCCceeeecc
Q 044162 95 HLVLDLDHTLLHSRL 109 (369)
Q Consensus 95 ~LVLDLD~TLIhs~~ 109 (369)
.+++|+||||+++..
T Consensus 3 ~viFD~DGTL~d~~~ 17 (224)
T TIGR02254 3 TLLFDLDDTILDFQA 17 (224)
T ss_pred EEEEcCcCcccccch
Confidence 589999999999875
No 202
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=63.52 E-value=4.3 Score=39.21 Aligned_cols=17 Identities=24% Similarity=0.315 Sum_probs=14.5
Q ss_pred CceEEEEeCCCceeeec
Q 044162 92 RKLHLVLDLDHTLLHSR 108 (369)
Q Consensus 92 ~Kl~LVLDLD~TLIhs~ 108 (369)
+-..+|+||||||++|.
T Consensus 39 ~~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 39 LPEALLFDCDGVLVETE 55 (286)
T ss_pred CCcEEEEeCceeEEccc
Confidence 33578999999999987
No 203
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=63.47 E-value=9.4 Score=40.29 Aligned_cols=89 Identities=15% Similarity=0.106 Sum_probs=61.1
Q ss_pred eEEEEeCccHHHHHHHHh-cCc-cEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEE
Q 044162 150 VLLVKLRPFVRSFLEEAS-RLF-EISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVI 227 (369)
Q Consensus 150 ~~~vklRPgl~eFL~~ls-~~y-Ei~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvI 227 (369)
.....+|||+.+.|+++. ..+ .++|-|...+.+|..+++.++.+. +|. ++. .+ ...+-++.+....+.+++
T Consensus 358 ~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~~-~f~-~~~-p~----~K~~~i~~l~~~~~~v~~ 430 (536)
T TIGR01512 358 LLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGIDE-VHA-ELL-PE----DKLEIVKELREKYGPVAM 430 (536)
T ss_pred EEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCChh-hhh-ccC-cH----HHHHHHHHHHhcCCEEEE
Confidence 345678999999999997 568 999999999999999999998874 563 222 11 112223344455678999
Q ss_pred EeCCccccccCCCceEEe
Q 044162 228 VDDTESVWGGRVENLITV 245 (369)
Q Consensus 228 vDD~~~~w~~~~~N~I~I 245 (369)
|-|...=.+.-...++-|
T Consensus 431 vGDg~nD~~al~~A~vgi 448 (536)
T TIGR01512 431 VGDGINDAPALAAADVGI 448 (536)
T ss_pred EeCCHHHHHHHHhCCEEE
Confidence 999875443322334443
No 204
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=63.10 E-value=3.8 Score=37.91 Aligned_cols=16 Identities=38% Similarity=0.430 Sum_probs=13.3
Q ss_pred ceEEEEeCCCceeeec
Q 044162 93 KLHLVLDLDHTLLHSR 108 (369)
Q Consensus 93 Kl~LVLDLD~TLIhs~ 108 (369)
-..++|||||||+++.
T Consensus 10 ~k~vIFDlDGTL~d~~ 25 (224)
T PRK14988 10 VDTVLLDMDGTLLDLA 25 (224)
T ss_pred CCEEEEcCCCCccchh
Confidence 3468999999999954
No 205
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=60.99 E-value=9 Score=33.56 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=34.4
Q ss_pred EeCccHH----HHHHHH-hcCccEEEecCCcHHHHHHHHHHhCCCC
Q 044162 154 KLRPFVR----SFLEEA-SRLFEISVCTLGNREYATRAVKLLDPDC 194 (369)
Q Consensus 154 klRPgl~----eFL~~l-s~~yEi~I~T~g~~~YA~~i~~~lDp~~ 194 (369)
+++|++. +||+++ +..++++|-|++...+++.+++.++-..
T Consensus 85 ~~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~ 130 (192)
T PF12710_consen 85 KLFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDD 130 (192)
T ss_dssp HHCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSE
T ss_pred ccCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCc
Confidence 3456666 999998 5899999999999999999999777553
No 206
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=60.84 E-value=4.9 Score=36.31 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=12.6
Q ss_pred EEEEeCCCceeeec
Q 044162 95 HLVLDLDHTLLHSR 108 (369)
Q Consensus 95 ~LVLDLD~TLIhs~ 108 (369)
.+++||||||+++.
T Consensus 4 ~viFDldGtL~d~~ 17 (211)
T TIGR02247 4 AVIFDFGGVLLPSP 17 (211)
T ss_pred EEEEecCCceecCH
Confidence 68999999999974
No 207
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=60.68 E-value=4.5 Score=35.85 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=12.9
Q ss_pred eEEEEeCCCceeeec
Q 044162 94 LHLVLDLDHTLLHSR 108 (369)
Q Consensus 94 l~LVLDLD~TLIhs~ 108 (369)
..+|+||||||+.+.
T Consensus 5 k~viFD~DGTLid~~ 19 (201)
T TIGR01491 5 KLIIFDLDGTLTDVM 19 (201)
T ss_pred eEEEEeCCCCCcCCc
Confidence 369999999999865
No 208
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=60.61 E-value=9.9 Score=40.24 Aligned_cols=79 Identities=18% Similarity=0.165 Sum_probs=56.4
Q ss_pred eEEEEeCccHHHHHHHHh-cC-ccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccCcccccccccCCCCCcEEE
Q 044162 150 VLLVKLRPFVRSFLEEAS-RL-FEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQKERKYLDLVLGQENSIVI 227 (369)
Q Consensus 150 ~~~vklRPgl~eFL~~ls-~~-yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~~~~KdL~~l~~~~~~vvI 227 (369)
.+...+|||+.+.|+++. .. +.++|-|...+.+|..+++.++-+ .+|. ++. .++ ..+-++.+......+++
T Consensus 380 ~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~-~~f~-~~~-p~~----K~~~v~~l~~~~~~v~~ 452 (556)
T TIGR01525 380 ALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGID-EVHA-ELL-PED----KLAIVKELQEEGGVVAM 452 (556)
T ss_pred EecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCC-eeec-cCC-HHH----HHHHHHHHHHcCCEEEE
Confidence 345679999999999997 46 999999999999999999999886 3564 232 111 11223333334568999
Q ss_pred EeCCcccc
Q 044162 228 VDDTESVW 235 (369)
Q Consensus 228 vDD~~~~w 235 (369)
|-|...=-
T Consensus 453 vGDg~nD~ 460 (556)
T TIGR01525 453 VGDGINDA 460 (556)
T ss_pred EECChhHH
Confidence 99987433
No 209
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=60.60 E-value=4.7 Score=36.84 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=14.8
Q ss_pred CceEEEEeCCCceeeecc
Q 044162 92 RKLHLVLDLDHTLLHSRL 109 (369)
Q Consensus 92 ~Kl~LVLDLD~TLIhs~~ 109 (369)
+-..++||+||||+++..
T Consensus 6 ~~k~iiFD~DGTL~d~~~ 23 (222)
T PRK10826 6 QILAAIFDMDGLLIDSEP 23 (222)
T ss_pred cCcEEEEcCCCCCCcCHH
Confidence 446789999999999864
No 210
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=58.35 E-value=17 Score=32.34 Aligned_cols=37 Identities=16% Similarity=0.069 Sum_probs=27.1
Q ss_pred EeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHh
Q 044162 154 KLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLL 190 (369)
Q Consensus 154 klRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~l 190 (369)
+.+||+-++...++ +.|.+.--|+-.-.-|......|
T Consensus 27 ~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~Tr~~L 64 (157)
T PF08235_consen 27 WTHPGAAELYRKIADNGYKILYLTARPIGQANRTRSWL 64 (157)
T ss_pred hhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHHHHHH
Confidence 67899999999997 67887777776655555554443
No 211
>PRK09449 dUMP phosphatase; Provisional
Probab=58.24 E-value=4.7 Score=36.71 Aligned_cols=14 Identities=36% Similarity=0.527 Sum_probs=12.0
Q ss_pred eEEEEeCCCceeee
Q 044162 94 LHLVLDLDHTLLHS 107 (369)
Q Consensus 94 l~LVLDLD~TLIhs 107 (369)
..+++||||||++.
T Consensus 4 k~iiFDlDGTLid~ 17 (224)
T PRK09449 4 DWILFDADETLFHF 17 (224)
T ss_pred cEEEEcCCCchhcc
Confidence 36899999999973
No 212
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=55.14 E-value=17 Score=40.04 Aligned_cols=46 Identities=15% Similarity=0.039 Sum_probs=38.4
Q ss_pred HhhhcCceE-EecccCCCCC-hhHHHHHHhcCCEEEeccCCCceEEEe
Q 044162 312 SRILMGCTI-LFGDDDFEEL-PLTWSRAEEMGAICTLVTDASVTHVVS 357 (369)
Q Consensus 312 ~~VL~g~~i-vFSg~~p~~~-p~lw~la~~~GA~v~~~i~~~vTHvVa 357 (369)
..+|.|..+ |+||..-... +.+-+++..+||.++.++.+.+||.|+
T Consensus 631 s~if~gl~f~Vlsgt~~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~ 678 (881)
T KOG0966|consen 631 SNIFDGLEFCVLSGTSETHTKAKLEEIIVENGGKIVQNVGPSDTLCIA 678 (881)
T ss_pred hhhhcCeeEEEecCCcccccHHHHHHHHHHcCCEEEEcCCCCCcceEE
Confidence 467888887 7887654442 588999999999999999999999996
No 213
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=54.93 E-value=5.7 Score=40.95 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=14.1
Q ss_pred eEEEEeCCCceeeecc
Q 044162 94 LHLVLDLDHTLLHSRL 109 (369)
Q Consensus 94 l~LVLDLD~TLIhs~~ 109 (369)
..++|||||||++|..
T Consensus 242 k~vIFDlDGTLiDs~~ 257 (459)
T PRK06698 242 QALIFDMDGTLFQTDK 257 (459)
T ss_pred hheeEccCCceecchh
Confidence 4789999999999875
No 214
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=48.22 E-value=15 Score=34.76 Aligned_cols=81 Identities=11% Similarity=-0.020 Sum_probs=58.8
Q ss_pred EEEEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCCCcccceEEeeccccC-----cccccccccCCCCCc
Q 044162 151 LLVKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDCKYFNSRIITREDFKQ-----KERKYLDLVLGQENS 224 (369)
Q Consensus 151 ~~vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~~~f~~Ri~srd~~~~-----~~~KdL~~l~~~~~~ 224 (369)
.|..+.|-+ ++|++++ +.+.|.|.|+...++= .++..++-. .+|..-+.|-+.-.. -+.+-|++++..++.
T Consensus 111 ~~~~~~~~~-~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~-~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee 187 (237)
T KOG3085|consen 111 AWKYLDGMQ-ELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLS-AYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEE 187 (237)
T ss_pred CceeccHHH-HHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHH-HhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHH
Confidence 344445555 9999998 7789999999998887 666666666 578765544332221 156778888888999
Q ss_pred EEEEeCCccc
Q 044162 225 IVIVDDTESV 234 (369)
Q Consensus 225 vvIvDD~~~~ 234 (369)
+|.|||+...
T Consensus 188 ~vhIgD~l~n 197 (237)
T KOG3085|consen 188 CVHIGDLLEN 197 (237)
T ss_pred eEEecCcccc
Confidence 9999998865
No 215
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=48.00 E-value=31 Score=38.43 Aligned_cols=64 Identities=14% Similarity=0.121 Sum_probs=44.7
Q ss_pred hcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHhc
Q 044162 89 LRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEASR 168 (369)
Q Consensus 89 l~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls~ 168 (369)
.+.++..|+||.||||+.-...+. . ..-+..-|++.+-|+.|++
T Consensus 503 ~~a~~rll~LDyDGTL~~~~~~~~----------------------~--------------p~~a~p~~~l~~~L~~L~~ 546 (797)
T PLN03063 503 SKSNNRLLILGFYGTLTEPRNSQI----------------------K--------------EMDLGLHPELKETLKALCS 546 (797)
T ss_pred HhccCeEEEEecCccccCCCCCcc----------------------c--------------cccCCCCHHHHHHHHHHHc
Confidence 456789999999999994332110 0 1113445899999999985
Q ss_pred --CccEEEecCCcHHHHHHHHH
Q 044162 169 --LFEISVCTLGNREYATRAVK 188 (369)
Q Consensus 169 --~yEi~I~T~g~~~YA~~i~~ 188 (369)
.-.|+|-|--++.-.+..+.
T Consensus 547 d~~~~V~IvSGR~~~~L~~~~~ 568 (797)
T PLN03063 547 DPKTTVVVLSRSGKDILDKNFG 568 (797)
T ss_pred CCCCEEEEEeCCCHHHHHHHhC
Confidence 46788888777777776664
No 216
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=47.07 E-value=9.9 Score=22.63 Aligned_cols=19 Identities=16% Similarity=0.333 Sum_probs=11.6
Q ss_pred CCCCceee-ccccccccccc
Q 044162 37 ICPHATIL-NGMCVVCDKLM 55 (369)
Q Consensus 37 ~C~H~~~~-~~~C~~Cg~~~ 55 (369)
.|.+.+.- ...|..||.++
T Consensus 4 ~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 4 NCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred ccCCCCCCcCcchhhhCCcC
Confidence 46666663 33677777654
No 217
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=47.03 E-value=9.5 Score=34.98 Aligned_cols=12 Identities=33% Similarity=0.493 Sum_probs=10.7
Q ss_pred EEEeCCCceeee
Q 044162 96 LVLDLDHTLLHS 107 (369)
Q Consensus 96 LVLDLD~TLIhs 107 (369)
.++|||+|||..
T Consensus 4 a~FDlD~TLi~~ 15 (203)
T TIGR02137 4 ACLDLEGVLVPE 15 (203)
T ss_pred EEEeCCcccHHH
Confidence 799999999964
No 218
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=46.66 E-value=36 Score=38.59 Aligned_cols=73 Identities=16% Similarity=0.154 Sum_probs=49.1
Q ss_pred hhcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh
Q 044162 88 LLRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS 167 (369)
Q Consensus 88 ll~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls 167 (369)
+.+.++..|+||.||||+--...|.-. ...+- .+-+..-|++.+-|+.|+
T Consensus 586 y~~a~~RLlfLDyDGTLap~~~~P~~~-----------------------~~~~~-------~~~a~p~p~l~~~L~~L~ 635 (934)
T PLN03064 586 YLQSNNRLLILGFNATLTEPVDTPGRR-----------------------GDQIK-------EMELRLHPELKEPLRALC 635 (934)
T ss_pred HHhccceEEEEecCceeccCCCCcccc-----------------------ccccc-------ccccCCCHHHHHHHHHHH
Confidence 346688999999999999654433100 00000 122445588999999998
Q ss_pred cC--ccEEEecCCcHHHHHHHHHHh
Q 044162 168 RL--FEISVCTLGNREYATRAVKLL 190 (369)
Q Consensus 168 ~~--yEi~I~T~g~~~YA~~i~~~l 190 (369)
.. ..|+|-|--.+.-.+..+..+
T Consensus 636 ~dp~n~VaIVSGR~~~~Le~~fg~~ 660 (934)
T PLN03064 636 SDPKTTIVVLSGSDRSVLDENFGEF 660 (934)
T ss_pred hCCCCeEEEEeCCCHHHHHHHhCCC
Confidence 54 679999988888877777544
No 219
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=46.28 E-value=44 Score=24.71 Aligned_cols=46 Identities=17% Similarity=0.078 Sum_probs=35.9
Q ss_pred CcHHHHHHHHHHhhhcCceEEecc-cCCCCChhHHHHHHhcCCEEEec
Q 044162 301 RDVRSCLAKIRSRILMGCTILFGD-DDFEELPLTWSRAEEMGAICTLV 347 (369)
Q Consensus 301 ~DVr~il~~~r~~VL~g~~ivFSg-~~p~~~p~lw~la~~~GA~v~~~ 347 (369)
.|++.+|..++..- ....+.|++ +-+.++..+-.+|+.+|-+..+.
T Consensus 2 ~~~~~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~S~ 48 (60)
T cd02640 2 NDYRQIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKSRSY 48 (60)
T ss_pred hhHHHHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCceeeE
Confidence 47888898888765 367889997 55555668899999999887643
No 220
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=45.51 E-value=18 Score=40.59 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=37.8
Q ss_pred hcCCceEEEEeCCCceeeeccCCCCCchHHHHHHHHhhccCCccccccCCCceeEEEEcCceEEEEeCccHHHHHHHHh-
Q 044162 89 LRMRKLHLVLDLDHTLLHSRLIGKLTSDEKYLEKAAAAAGEFSSDKISRGNDLFKIKIGDNVLLVKLRPFVRSFLEEAS- 167 (369)
Q Consensus 89 l~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~~~~~~~~~~~f~~~~~p~~~~~~~~~~~~~~~~vklRPgl~eFL~~ls- 167 (369)
.+.++..|+||+||||+...... ...-|++.+-|++|+
T Consensus 592 ~~~~~rlI~LDyDGTLlp~~~~~-----------------------------------------~~p~~~~~~~L~~L~~ 630 (854)
T PLN02205 592 KRTTTRAILLDYDGTLMPQASID-----------------------------------------KSPSSKSIDILNTLCR 630 (854)
T ss_pred HhhcCeEEEEecCCcccCCcccc-----------------------------------------CCCCHHHHHHHHHHHh
Confidence 45678889999999999433110 112367888888875
Q ss_pred -cCccEEEecCCcHHHHHHHHH
Q 044162 168 -RLFEISVCTLGNREYATRAVK 188 (369)
Q Consensus 168 -~~yEi~I~T~g~~~YA~~i~~ 188 (369)
+.-.++|-|--.+.-.+....
T Consensus 631 d~g~~VaIvSGR~~~~L~~~f~ 652 (854)
T PLN02205 631 DKNNMVFIVSARSRKTLADWFS 652 (854)
T ss_pred cCCCEEEEEeCCCHHHHHHHhC
Confidence 345666766655555555543
No 221
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=44.91 E-value=12 Score=35.26 Aligned_cols=14 Identities=43% Similarity=0.422 Sum_probs=12.3
Q ss_pred CceEEEEeCCCcee
Q 044162 92 RKLHLVLDLDHTLL 105 (369)
Q Consensus 92 ~Kl~LVLDLD~TLI 105 (369)
+++.|+-|||+||+
T Consensus 1 ~~~ll~sDlD~Tl~ 14 (247)
T PF05116_consen 1 PPRLLASDLDGTLI 14 (247)
T ss_dssp -SEEEEEETBTTTB
T ss_pred CCEEEEEECCCCCc
Confidence 46889999999999
No 222
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=43.01 E-value=17 Score=36.95 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=43.5
Q ss_pred CCcHHHHHHHHH---HhhhcCceEEecccCCCCChhHHHHHHhcCCEEEe-----------ccCCCceEEEecCC
Q 044162 300 GRDVRSCLAKIR---SRILMGCTILFGDDDFEELPLTWSRAEEMGAICTL-----------VTDASVTHVVSSNT 360 (369)
Q Consensus 300 ~~DVr~il~~~r---~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~-----------~i~~~vTHvVa~~~ 360 (369)
..|+......+- ..+|+|.++..|+-+|.. .+.-++.++|+.|.. ++|+.|||-|+-++
T Consensus 333 n~d~~~~vsk~~Ss~~slFS~f~FyisreVp~d--sLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp 405 (591)
T COG5163 333 NKDIMEMVSKPCSSLKSLFSGFKFYISREVPGD--SLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRP 405 (591)
T ss_pred chhhhhhccCcCcchhhhhhceEEEEeccccch--HHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccch
Confidence 346665555433 457899999999988865 677788999988764 34788999998764
No 223
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=42.38 E-value=11 Score=34.75 Aligned_cols=12 Identities=50% Similarity=0.800 Sum_probs=10.6
Q ss_pred EEEeCCCceeee
Q 044162 96 LVLDLDHTLLHS 107 (369)
Q Consensus 96 LVLDLD~TLIhs 107 (369)
++.||||||++.
T Consensus 2 i~~DlDgTLl~~ 13 (236)
T TIGR02471 2 IITDLDNTLLGD 13 (236)
T ss_pred eEEeccccccCC
Confidence 688999999984
No 224
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=40.78 E-value=16 Score=32.98 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=14.5
Q ss_pred CceEEEEeCCCceeeecc
Q 044162 92 RKLHLVLDLDHTLLHSRL 109 (369)
Q Consensus 92 ~Kl~LVLDLD~TLIhs~~ 109 (369)
....+++|+||||++...
T Consensus 3 ~~k~i~FD~d~TL~d~~~ 20 (229)
T COG1011 3 MIKAILFDLDGTLLDFDS 20 (229)
T ss_pred ceeEEEEecCCcccccch
Confidence 345788999999999754
No 225
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=40.62 E-value=15 Score=33.03 Aligned_cols=14 Identities=14% Similarity=0.385 Sum_probs=12.1
Q ss_pred EEEEeCCCceeeec
Q 044162 95 HLVLDLDHTLLHSR 108 (369)
Q Consensus 95 ~LVLDLD~TLIhs~ 108 (369)
.+|+||||||++..
T Consensus 2 ~viFDldgvL~d~~ 15 (199)
T PRK09456 2 LYIFDLGNVIVDID 15 (199)
T ss_pred EEEEeCCCccccCc
Confidence 57999999999863
No 226
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=39.62 E-value=44 Score=34.00 Aligned_cols=21 Identities=19% Similarity=0.213 Sum_probs=16.8
Q ss_pred cCCceEEEEeCCCceeeeccC
Q 044162 90 RMRKLHLVLDLDHTLLHSRLI 110 (369)
Q Consensus 90 ~~~Kl~LVLDLD~TLIhs~~~ 110 (369)
+......-+|||+|||.+.+.
T Consensus 72 ~~~~K~i~FD~dgtlI~t~sg 92 (422)
T KOG2134|consen 72 NGGSKIIMFDYDGTLIDTKSG 92 (422)
T ss_pred CCCcceEEEecCCceeecCCc
Confidence 456667789999999998764
No 227
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=39.35 E-value=16 Score=33.61 Aligned_cols=18 Identities=33% Similarity=0.468 Sum_probs=14.5
Q ss_pred ceEEEEeCCCceeeeccC
Q 044162 93 KLHLVLDLDHTLLHSRLI 110 (369)
Q Consensus 93 Kl~LVLDLD~TLIhs~~~ 110 (369)
|...++|+||||++..+.
T Consensus 5 ~~la~FDfDgTLt~~ds~ 22 (210)
T TIGR01545 5 KRIIFFDLDGTLHQQDMF 22 (210)
T ss_pred CcEEEEcCCCCCccCccH
Confidence 455799999999997654
No 228
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=39.24 E-value=15 Score=22.37 Aligned_cols=19 Identities=16% Similarity=0.338 Sum_probs=11.4
Q ss_pred CCCCceee-ccccccccccc
Q 044162 37 ICPHATIL-NGMCVVCDKLM 55 (369)
Q Consensus 37 ~C~H~~~~-~~~C~~Cg~~~ 55 (369)
.|.+.+.. ...|..||+.|
T Consensus 7 ~Cg~~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 7 NCGAEIDPDAKFCPNCGAKL 26 (26)
T ss_pred ccCCcCCcccccChhhCCCC
Confidence 46665443 34777777754
No 229
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=36.93 E-value=43 Score=31.96 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=31.0
Q ss_pred EEEEeCccHHHHHHHHhc-CccEEEecCCcHHHHHHHHHHh
Q 044162 151 LLVKLRPFVRSFLEEASR-LFEISVCTLGNREYATRAVKLL 190 (369)
Q Consensus 151 ~~vklRPgl~eFL~~ls~-~yEi~I~T~g~~~YA~~i~~~l 190 (369)
.-+.+|.|+.+|++.+.+ .--+.||+||--.-.+.+++.-
T Consensus 87 s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~ 127 (246)
T PF05822_consen 87 SDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA 127 (246)
T ss_dssp S---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT
T ss_pred cchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc
Confidence 358899999999999985 5689999999999999999875
No 230
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=35.36 E-value=37 Score=31.40 Aligned_cols=34 Identities=12% Similarity=0.076 Sum_probs=21.9
Q ss_pred EEeCccHHHHHHHHhcCcc--EEEecCCcHHHHHHH
Q 044162 153 VKLRPFVRSFLEEASRLFE--ISVCTLGNREYATRA 186 (369)
Q Consensus 153 vklRPgl~eFL~~ls~~yE--i~I~T~g~~~YA~~i 186 (369)
.+.-|++.+.|+.|+.... ++|-|--+..-.+..
T Consensus 18 ~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~~ 53 (235)
T PF02358_consen 18 AVPPPELRELLRALAADPNNTVAIVSGRSLDDLERF 53 (235)
T ss_dssp ----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHHH
T ss_pred cCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHHh
Confidence 3446999999999998777 888887776663333
No 231
>PRK03922 hypothetical protein; Provisional
Probab=34.84 E-value=52 Score=27.45 Aligned_cols=70 Identities=21% Similarity=0.247 Sum_probs=43.6
Q ss_pred eccCCccCCCCcccccccccCCCCCCceee-ccccccccccccccC---C---ccceeecCCc-ccCHHHHHHHhhhhhh
Q 044162 15 SWTGSDSLPLQLPLLSVSEEHTICPHATIL-NGMCVVCDKLMDDSY---G---LCFDYIEKGL-RYSIDEISRLKKRNTK 86 (369)
Q Consensus 15 ~~~g~~~~~~~~~~~~~~~~~~~C~H~~~~-~~~C~~Cg~~~~~~~---~---~~~~~~~~~l-~vs~~~a~~~~~~~~~ 86 (369)
++.|++.+|.+...- .+-+ ...|..||.+++..- . +.+....+-. -=|++.|+|+.+....
T Consensus 29 seaGkrLn~~~l~yV-----------eievG~~~cP~cge~~~~afvvA~taLVgL~lemkVFnAes~EHA~RIAK~eIG 97 (113)
T PRK03922 29 SEAGKRLNPEDLDYV-----------EVEVGLTICPKCGEPFDSAFVVADTALVGLLLEMKVFNAESEEHASRIAKSEIG 97 (113)
T ss_pred HHHHhhcCcccCCeE-----------EEecCcccCCCCCCcCCcEEEEeccceEEEEEEEEEeecCCHHHHHHHHHHHHh
Confidence 567899999664431 1222 236888999987651 1 1111111112 1288999999999988
Q ss_pred hhhcCCceE
Q 044162 87 NLLRMRKLH 95 (369)
Q Consensus 87 ~ll~~~Kl~ 95 (369)
+-|++=.|.
T Consensus 98 ~aL~dvPL~ 106 (113)
T PRK03922 98 KALRDIPLE 106 (113)
T ss_pred hHHhcCCce
Confidence 877776666
No 232
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=34.71 E-value=17 Score=32.30 Aligned_cols=14 Identities=29% Similarity=0.330 Sum_probs=11.8
Q ss_pred EEEeCCCceeeecc
Q 044162 96 LVLDLDHTLLHSRL 109 (369)
Q Consensus 96 LVLDLD~TLIhs~~ 109 (369)
.++|+||||+...+
T Consensus 2 a~FD~DgTL~~~~s 15 (202)
T TIGR01490 2 AFFDFDGTLTAKDT 15 (202)
T ss_pred eEEccCCCCCCCch
Confidence 58999999998643
No 233
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=34.33 E-value=23 Score=31.77 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=12.6
Q ss_pred CceEEEEeCCCceeeec
Q 044162 92 RKLHLVLDLDHTLLHSR 108 (369)
Q Consensus 92 ~Kl~LVLDLD~TLIhs~ 108 (369)
||+.|.+|+||||.+..
T Consensus 1 ~~i~I~iDiDgVLad~~ 17 (191)
T PF06941_consen 1 RKIRIAIDIDGVLADFN 17 (191)
T ss_dssp --EEEEEESBTTTB-HH
T ss_pred CCcEEEEECCCCCcccH
Confidence 57779999999999865
No 234
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=32.34 E-value=30 Score=38.55 Aligned_cols=69 Identities=12% Similarity=0.042 Sum_probs=58.1
Q ss_pred CCcHHHHHHHHHHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEec-CCCccccccc
Q 044162 300 GRDVRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSS-NTQSETFEWA 368 (369)
Q Consensus 300 ~~DVr~il~~~r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~-~~gT~K~~~a 368 (369)
..+-++....++...+.||.|..+|+--.....+-.+.-.+|.+-...++..|+|+++. ...|+|++||
T Consensus 89 ~~~~~~l~~~~~~p~~~~~~Vc~tgl~~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~a 158 (811)
T KOG1929|consen 89 IRLLDPLRDTMKCPGFFGLKVCLTGLSGDEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQA 158 (811)
T ss_pred CccCccchhhhcCCcccceEEEecccchHHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHH
Confidence 34555667778999999999999998766666888899999999999999999888886 4667999988
No 235
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=31.72 E-value=83 Score=31.10 Aligned_cols=50 Identities=12% Similarity=0.129 Sum_probs=35.7
Q ss_pred CcHHHHHHHHHHhhhcCceEEecccCCCCCh-----hHHHHHHhcCCEEEeccCC
Q 044162 301 RDVRSCLAKIRSRILMGCTILFGDDDFEELP-----LTWSRAEEMGAICTLVTDA 350 (369)
Q Consensus 301 ~DVr~il~~~r~~VL~g~~ivFSg~~p~~~p-----~lw~la~~~GA~v~~~i~~ 350 (369)
.+++.++..+++.+-++-.+++||-+|.+-| .+-+++++.|+.|.-|.+.
T Consensus 114 ~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg 168 (310)
T COG1105 114 AELEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSG 168 (310)
T ss_pred HHHHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECCh
Confidence 4556666666665556666889998888755 5556788889988888764
No 236
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=31.62 E-value=98 Score=24.41 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.2
Q ss_pred CCceEEEEeCCCceeeec
Q 044162 91 MRKLHLVLDLDHTLLHSR 108 (369)
Q Consensus 91 ~~Kl~LVLDLD~TLIhs~ 108 (369)
....+|||+=|||.|.+.
T Consensus 40 ~~~~~lvL~eDGT~VddE 57 (80)
T cd06536 40 SAPITLVLAEDGTIVEDE 57 (80)
T ss_pred CCceEEEEecCCcEEccH
Confidence 357999999999999754
No 237
>PF11004 Kdo_hydroxy: 3-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase; InterPro: IPR021266 This bacterial family of proteins has no known function.
Probab=30.09 E-value=16 Score=35.23 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=21.1
Q ss_pred hhhcCceE--EecccCCCCChhHHHHHHhc
Q 044162 313 RILMGCTI--LFGDDDFEELPLTWSRAEEM 340 (369)
Q Consensus 313 ~VL~g~~i--vFSg~~p~~~p~lw~la~~~ 340 (369)
.-..|.+| ||+.|.|.+.|++|++.|-|
T Consensus 135 ~P~~G~RiLRvF~NINP~g~pRvWrvGEpF 164 (281)
T PF11004_consen 135 RPTYGERILRVFTNINPDGEPRVWRVGEPF 164 (281)
T ss_pred CCCCCceeeEEeeccCCCCCCcccccCCCh
Confidence 34567776 99999999999888854443
No 238
>PF05864 Chordopox_RPO7: Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7); InterPro: IPR008448 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide sequences. DNA-dependent RNA polymerase catalyses the transcription of DNA into RNA [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=29.17 E-value=19 Score=26.52 Aligned_cols=17 Identities=12% Similarity=0.554 Sum_probs=13.7
Q ss_pred eeccccccccccccccC
Q 044162 43 ILNGMCVVCDKLMDDSY 59 (369)
Q Consensus 43 ~~~~~C~~Cg~~~~~~~ 59 (369)
++.-.|..||.|+.+..
T Consensus 2 Vf~lvCSTCGrDlSeeR 18 (63)
T PF05864_consen 2 VFQLVCSTCGRDLSEER 18 (63)
T ss_pred eeeeeecccCCcchHHH
Confidence 45668999999998774
No 239
>COG1885 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.85 E-value=64 Score=26.73 Aligned_cols=49 Identities=14% Similarity=0.236 Sum_probs=31.5
Q ss_pred ccccccccccccC---Cc-----cceeecCCcccCHHHHHHHhhhhhhhhhcCCceEE
Q 044162 47 MCVVCDKLMDDSY---GL-----CFDYIEKGLRYSIDEISRLKKRNTKNLLRMRKLHL 96 (369)
Q Consensus 47 ~C~~Cg~~~~~~~---~~-----~~~~~~~~l~vs~~~a~~~~~~~~~~ll~~~Kl~L 96 (369)
.|..||.+++..- +. -+++.--+ -=|++-|+|+.+.....-|++=.|.+
T Consensus 51 ~CP~Cg~~~e~~fvva~~aLVgl~l~mkVFN-aes~EHA~RIAK~eIGk~L~~iPL~v 107 (115)
T COG1885 51 SCPKCGEPFESAFVVANTALVGLILSMKVFN-AESDEHAERIAKAEIGKALKDIPLEV 107 (115)
T ss_pred cCCCCCCccceeEEEecceeEEEEEEEEEec-CCCHHHHHHHHHHHHhhHhhcCCceE
Confidence 6888999987652 11 11211111 12889999999998887777766653
No 240
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=28.80 E-value=60 Score=32.38 Aligned_cols=40 Identities=25% Similarity=0.364 Sum_probs=31.7
Q ss_pred EEEEeCc-cHHHHHHHHhc------CccEEEecCCcHHHHHHHHHHh
Q 044162 151 LLVKLRP-FVRSFLEEASR------LFEISVCTLGNREYATRAVKLL 190 (369)
Q Consensus 151 ~~vklRP-gl~eFL~~ls~------~yEi~I~T~g~~~YA~~i~~~l 190 (369)
+.+.-|| ++++-|+.+.+ .++|+|+-.|...-+..+++..
T Consensus 6 v~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~ 52 (334)
T cd02514 6 VIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSF 52 (334)
T ss_pred EEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhh
Confidence 5678899 79999998874 4889999999987666666554
No 241
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=27.47 E-value=1.3e+02 Score=23.61 Aligned_cols=18 Identities=28% Similarity=0.303 Sum_probs=15.7
Q ss_pred CCceEEEEeCCCceeeec
Q 044162 91 MRKLHLVLDLDHTLLHSR 108 (369)
Q Consensus 91 ~~Kl~LVLDLD~TLIhs~ 108 (369)
..-.+|||+-|||.|.+.
T Consensus 38 ~~~~~lvL~eDGTeVddE 55 (78)
T cd01615 38 SAPVTLVLEEDGTEVDDE 55 (78)
T ss_pred CCCeEEEEeCCCcEEccH
Confidence 688999999999999653
No 242
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=26.49 E-value=1.2e+02 Score=28.34 Aligned_cols=50 Identities=14% Similarity=0.215 Sum_probs=41.0
Q ss_pred EEeCccHHHHHHHHh-cCccEEEecCCcHHHHHHHHHHhCCCC-CcccceEE
Q 044162 153 VKLRPFVRSFLEEAS-RLFEISVCTLGNREYATRAVKLLDPDC-KYFNSRII 202 (369)
Q Consensus 153 vklRPgl~eFL~~ls-~~yEi~I~T~g~~~YA~~i~~~lDp~~-~~f~~Ri~ 202 (369)
..+-||++|+-..+. +...+++-+-|=+..+..|...|+-.. ..|.+++.
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~ 138 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELL 138 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheee
Confidence 456799999999997 788999999999999999999998653 24445443
No 243
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=26.08 E-value=35 Score=39.23 Aligned_cols=17 Identities=24% Similarity=0.284 Sum_probs=14.2
Q ss_pred eEEEEeCCCceeeeccC
Q 044162 94 LHLVLDLDHTLLHSRLI 110 (369)
Q Consensus 94 l~LVLDLD~TLIhs~~~ 110 (369)
..+++||||||+++...
T Consensus 76 kaVIFDlDGTLiDS~~~ 92 (1057)
T PLN02919 76 SAVLFDMDGVLCNSEEP 92 (1057)
T ss_pred CEEEECCCCCeEeChHH
Confidence 46899999999998653
No 244
>PHA03082 DNA-dependent RNA polymerase subunit; Provisional
Probab=26.06 E-value=23 Score=26.09 Aligned_cols=17 Identities=12% Similarity=0.554 Sum_probs=13.6
Q ss_pred eeccccccccccccccC
Q 044162 43 ILNGMCVVCDKLMDDSY 59 (369)
Q Consensus 43 ~~~~~C~~Cg~~~~~~~ 59 (369)
++.-.|..||.|+.+..
T Consensus 2 Vf~lVCsTCGrDlSeeR 18 (63)
T PHA03082 2 VFQLVCSTCGRDLSEER 18 (63)
T ss_pred eeeeeecccCcchhHHH
Confidence 45567999999998774
No 245
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=23.74 E-value=1.4e+02 Score=21.49 Aligned_cols=55 Identities=9% Similarity=-0.038 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHhhhcCceEEecccCCCCChhHHHHHHhcCCEEEeccCCCceEEEec
Q 044162 302 DVRSCLAKIRSRILMGCTILFGDDDFEELPLTWSRAEEMGAICTLVTDASVTHVVSS 358 (369)
Q Consensus 302 DVr~il~~~r~~VL~g~~ivFSg~~p~~~p~lw~la~~~GA~v~~~i~~~vTHvVa~ 358 (369)
||+..|..+...- ...+.|...-|.++.-+-+||+.+|-...+.=...-.||+..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fppm~~~~R~~vH~lA~~~~L~S~S~G~g~~R~v~v~ 57 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPPMDKHGRKTIHKLANCYNLKSKSRGKGKKRFVTVT 57 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCCCCHHHHHHHHHHHHHcCCcccccccCCceEEEEE
Confidence 4455555444433 445566554333445888999999988765434456777754
No 246
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=23.51 E-value=33 Score=27.66 Aligned_cols=15 Identities=33% Similarity=0.853 Sum_probs=12.3
Q ss_pred ecccccccccccccc
Q 044162 44 LNGMCVVCDKLMDDS 58 (369)
Q Consensus 44 ~~~~C~~Cg~~~~~~ 58 (369)
-.|+|+.||+.+.+.
T Consensus 68 kkGiCamCGKki~dt 82 (90)
T PF10235_consen 68 KKGICAMCGKKILDT 82 (90)
T ss_pred ccCcccccCCeeccc
Confidence 378999999998554
No 247
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=23.11 E-value=47 Score=29.33 Aligned_cols=14 Identities=21% Similarity=0.351 Sum_probs=12.0
Q ss_pred EEEEeCCCceeeec
Q 044162 95 HLVLDLDHTLLHSR 108 (369)
Q Consensus 95 ~LVLDLD~TLIhs~ 108 (369)
++++|.||||....
T Consensus 3 ~i~fDktGTLt~~~ 16 (215)
T PF00702_consen 3 AICFDKTGTLTQGK 16 (215)
T ss_dssp EEEEECCTTTBESH
T ss_pred EEEEecCCCcccCe
Confidence 68999999998754
No 248
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=22.71 E-value=1.4e+02 Score=23.44 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=15.8
Q ss_pred hcCCceEEEEeCCCceeeec
Q 044162 89 LRMRKLHLVLDLDHTLLHSR 108 (369)
Q Consensus 89 l~~~Kl~LVLDLD~TLIhs~ 108 (369)
+...-..|||+-|||.|...
T Consensus 36 ~~~~~~~lvL~eDGT~VddE 55 (78)
T PF02017_consen 36 LPEEPVRLVLEEDGTEVDDE 55 (78)
T ss_dssp -SSSTCEEEETTTTCBESSC
T ss_pred CCCcCcEEEEeCCCcEEccH
Confidence 34478899999999999743
No 249
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=22.54 E-value=36 Score=32.62 Aligned_cols=12 Identities=42% Similarity=0.545 Sum_probs=10.5
Q ss_pred eEEEEeCCCcee
Q 044162 94 LHLVLDLDHTLL 105 (369)
Q Consensus 94 l~LVLDLD~TLI 105 (369)
-+.|.|||||||
T Consensus 3 ~VfvWDlDETlI 14 (274)
T TIGR01658 3 NVYVWDMDETLI 14 (274)
T ss_pred eeEEEeccchHH
Confidence 367999999998
No 250
>PF11475 VP_N-CPKC: Virion protein N terminal domain ; InterPro: IPR021573 This is the N-terminal domain of a family of virion proteins which contains a zinc finger domain. Currently no function is known. ; PDB: 2BAI_A.
Probab=22.10 E-value=25 Score=22.19 Aligned_cols=20 Identities=35% Similarity=0.856 Sum_probs=11.1
Q ss_pred cCCCCCCceeecccccccccc
Q 044162 34 EHTICPHATILNGMCVVCDKL 54 (369)
Q Consensus 34 ~~~~C~H~~~~~~~C~~Cg~~ 54 (369)
+.+.|.|++.+.+ |..|.+-
T Consensus 6 eqeicahsltf~e-cpkcsal 25 (32)
T PF11475_consen 6 EQEICAHSLTFEE-CPKCSAL 25 (32)
T ss_dssp -S---SSSS-GGG-HHHHH-S
T ss_pred HHHHHhccccccc-CcchhHh
Confidence 4578999998876 8888653
No 251
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=20.91 E-value=49 Score=34.78 Aligned_cols=36 Identities=19% Similarity=0.119 Sum_probs=24.9
Q ss_pred eCccHHHHHHHHhcCccEEEecCCcHHHHHHHHHH-hCCC
Q 044162 155 LRPFVRSFLEEASRLFEISVCTLGNREYATRAVKL-LDPD 193 (369)
Q Consensus 155 lRPgl~eFL~~ls~~yEi~I~T~g~~~YA~~i~~~-lDp~ 193 (369)
+||...+-+++ .. +.+|-|++.+.|++++++. ++-+
T Consensus 111 l~~~a~~~~~~--~g-~~vvVSASp~~~Vepfa~~~LGid 147 (497)
T PLN02177 111 VHPETWRVFNS--FG-KRYIITASPRIMVEPFVKTFLGAD 147 (497)
T ss_pred cCHHHHHHHHh--CC-CEEEEECCcHHHHHHHHHHcCCCC
Confidence 56665554433 22 4599999999999999975 5443
No 252
>COG1273 Ku-homolog [Replication, recombination, and repair]
Probab=20.76 E-value=66 Score=31.07 Aligned_cols=49 Identities=10% Similarity=0.071 Sum_probs=34.5
Q ss_pred CCCCCCceeeccccccccccccccCCc-cceeecCC-cccCHHHHHHHhhh
Q 044162 35 HTICPHATILNGMCVVCDKLMDDSYGL-CFDYIEKG-LRYSIDEISRLKKR 83 (369)
Q Consensus 35 ~~~C~H~~~~~~~C~~Cg~~~~~~~~~-~~~~~~~~-l~vs~~~a~~~~~~ 83 (369)
...|.-++.+...|..||+.|+..+-+ +..|..+. +.+.++|.+.+..+
T Consensus 37 ~r~t~nrV~~~~Vd~~tGk~Ve~~d~VKGYE~~~~~yViledeel~s~~~e 87 (278)
T COG1273 37 HRKTGNRVRYKYVDSVTGKEVERDDIVKGYEYGKGDYVILEDEELESVPLE 87 (278)
T ss_pred hhhhCCceeeEEeccccCCccCccceeeeeEecCCcEEEecHHHHhhcccc
Confidence 446888899999999999999888633 33333333 56788887666443
Done!