Query 044163
Match_columns 783
No_of_seqs 324 out of 1898
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 12:02:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044163.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044163hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 2E-139 5E-144 1248.2 78.4 721 27-758 18-797 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 8E-111 2E-115 987.2 49.8 712 37-758 6-767 (769)
3 PRK03562 glutathione-regulated 100.0 6.5E-45 1.4E-49 425.2 39.9 356 43-420 20-381 (621)
4 PRK10669 putative cation:proto 100.0 7.9E-45 1.7E-49 423.1 38.9 358 41-419 19-389 (558)
5 PRK03659 glutathione-regulated 100.0 3E-44 6.5E-49 419.1 39.8 355 43-420 20-378 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 3.1E-43 6.8E-48 390.2 38.4 358 44-420 22-386 (397)
7 PRK05326 potassium/proton anti 100.0 1.6E-36 3.5E-41 353.2 32.5 362 41-419 19-388 (562)
8 PF00999 Na_H_Exchanger: Sodiu 100.0 7.7E-38 1.7E-42 349.0 -4.1 359 43-419 11-379 (380)
9 TIGR00932 2a37 transporter, mo 100.0 2.3E-33 5E-38 298.5 28.3 262 42-322 6-273 (273)
10 COG4651 RosB Kef-type K+ trans 100.0 2.6E-33 5.7E-38 281.4 25.7 357 41-419 19-388 (408)
11 TIGR00844 c_cpa1 na(+)/h(+) an 99.9 8.7E-24 1.9E-28 243.9 35.1 331 47-390 33-386 (810)
12 TIGR00831 a_cpa1 Na+/H+ antipo 99.9 2.3E-23 5E-28 239.8 34.9 352 46-418 16-408 (525)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 4.5E-20 9.7E-25 206.9 33.8 357 45-419 23-407 (429)
14 COG3263 NhaP-type Na+/H+ and K 99.9 1.1E-20 2.4E-25 199.6 22.5 353 40-412 19-379 (574)
15 TIGR00840 b_cpa1 sodium/hydrog 99.9 5.1E-19 1.1E-23 203.7 32.3 356 49-418 34-416 (559)
16 PRK14853 nhaA pH-dependent sod 99.7 4.9E-15 1.1E-19 162.1 34.0 297 89-417 65-394 (423)
17 PRK11175 universal stress prot 99.6 1.2E-14 2.6E-19 157.2 20.4 272 446-755 4-300 (305)
18 KOG4505 Na+/H+ antiporter [Ino 99.6 1.3E-13 2.7E-18 141.7 22.5 322 53-386 41-382 (467)
19 TIGR00773 NhaA Na+/H+ antiport 99.5 8.4E-12 1.8E-16 134.3 24.2 267 89-387 55-344 (373)
20 KOG1965 Sodium/hydrogen exchan 99.4 7.1E-12 1.5E-16 139.6 18.5 319 94-419 105-455 (575)
21 cd01988 Na_H_Antiporter_C The 99.3 3.9E-11 8.5E-16 112.5 12.9 131 447-592 1-131 (132)
22 PRK14856 nhaA pH-dependent sod 99.0 4.1E-08 8.9E-13 107.7 24.4 267 88-387 70-398 (438)
23 PRK09560 nhaA pH-dependent sod 99.0 1.8E-07 3.8E-12 101.3 25.9 268 89-387 62-353 (389)
24 PRK09561 nhaA pH-dependent sod 99.0 1.7E-07 3.7E-12 101.2 25.0 268 89-387 62-351 (388)
25 PRK14854 nhaA pH-dependent sod 98.9 4E-07 8.7E-12 98.1 25.7 268 90-388 60-349 (383)
26 PRK14855 nhaA pH-dependent sod 98.9 5.1E-07 1.1E-11 98.8 26.1 263 90-388 67-384 (423)
27 cd01989 STK_N The N-terminal d 98.8 3.6E-08 7.8E-13 94.4 12.5 139 447-595 1-145 (146)
28 cd01987 USP_OKCHK USP domain i 98.8 2.7E-08 5.8E-13 92.5 10.6 122 447-592 1-123 (124)
29 PRK15456 universal stress prot 98.8 4.7E-08 1E-12 93.3 11.8 135 446-592 3-141 (142)
30 PF06965 Na_H_antiport_1: Na+/ 98.7 1.2E-07 2.6E-12 102.5 12.5 270 89-389 58-353 (378)
31 PRK15005 universal stress prot 98.7 1.6E-07 3.6E-12 89.6 12.0 138 446-592 3-143 (144)
32 PRK09982 universal stress prot 98.7 1.4E-07 3E-12 90.2 10.8 134 446-592 4-137 (142)
33 PRK15118 universal stress glob 98.6 2.8E-07 6.1E-12 88.1 10.4 134 446-592 4-137 (144)
34 PF00582 Usp: Universal stress 98.6 1.2E-07 2.7E-12 88.5 7.5 134 446-592 3-139 (140)
35 COG3004 NhaA Na+/H+ antiporter 98.6 1.5E-05 3.3E-10 82.9 22.7 257 97-388 73-355 (390)
36 cd01988 Na_H_Antiporter_C The 98.5 1.8E-06 4E-11 80.6 13.0 126 612-754 1-132 (132)
37 cd00293 USP_Like Usp: Universa 98.4 1.8E-06 3.9E-11 79.7 11.1 129 447-591 1-129 (130)
38 PF00582 Usp: Universal stress 98.4 2.5E-06 5.3E-11 79.6 11.2 129 610-754 2-140 (140)
39 cd01989 STK_N The N-terminal d 98.4 3.4E-06 7.4E-11 80.7 12.3 129 612-756 1-146 (146)
40 PRK15005 universal stress prot 98.3 4.8E-06 1E-10 79.4 12.0 127 610-754 2-144 (144)
41 KOG1966 Sodium/hydrogen exchan 98.3 1.5E-07 3.3E-12 105.0 1.6 314 98-418 109-448 (670)
42 PRK10116 universal stress prot 98.3 4.6E-06 1E-10 79.3 10.6 134 446-592 4-137 (142)
43 PRK09982 universal stress prot 98.3 5E-06 1.1E-10 79.4 10.8 124 610-755 3-139 (142)
44 PRK11175 universal stress prot 98.3 5.2E-06 1.1E-10 89.8 11.3 145 445-597 152-303 (305)
45 PRK15456 universal stress prot 98.1 3.6E-05 7.9E-10 73.3 11.9 126 610-754 2-142 (142)
46 cd01987 USP_OKCHK USP domain i 98.1 2E-05 4.3E-10 73.1 9.8 120 612-753 1-123 (124)
47 PRK15118 universal stress glob 98.0 1.9E-05 4.1E-10 75.4 9.2 125 610-755 3-139 (144)
48 cd00293 USP_Like Usp: Universa 98.0 7.3E-05 1.6E-09 68.8 12.7 124 612-753 1-130 (130)
49 PRK12460 2-keto-3-deoxyglucona 98.0 0.0011 2.3E-08 70.4 21.8 253 95-420 51-306 (312)
50 PRK10116 universal stress prot 98.0 3.4E-05 7.3E-10 73.4 9.8 126 610-755 3-139 (142)
51 PF03812 KdgT: 2-keto-3-deoxyg 97.7 0.0032 7E-08 66.4 19.7 167 95-326 51-219 (314)
52 COG0589 UspA Universal stress 97.4 0.0026 5.7E-08 60.5 13.2 138 446-592 6-150 (154)
53 PF05684 DUF819: Protein of un 97.4 0.31 6.7E-06 54.3 30.2 288 59-393 34-352 (378)
54 TIGR00793 kdgT 2-keto-3-deoxyg 97.2 0.013 2.9E-07 61.5 16.1 167 95-326 51-219 (314)
55 PRK12652 putative monovalent c 97.1 0.0032 6.8E-08 69.2 10.6 130 446-589 6-146 (357)
56 COG0385 Predicted Na+-dependen 97.0 0.59 1.3E-05 50.2 26.6 145 86-244 35-191 (319)
57 PRK12652 putative monovalent c 96.9 0.0092 2E-07 65.6 12.3 124 609-743 4-144 (357)
58 COG0589 UspA Universal stress 96.8 0.01 2.3E-07 56.3 10.6 131 610-755 5-152 (154)
59 PRK03562 glutathione-regulated 96.6 0.072 1.6E-06 63.5 18.1 117 255-375 10-127 (621)
60 PF05145 AmoA: Putative ammoni 96.5 1.7 3.8E-05 47.3 26.1 156 255-419 157-315 (318)
61 PF13593 DUF4137: SBF-like CPA 96.3 1.1 2.4E-05 48.6 23.5 108 88-207 30-145 (313)
62 TIGR00932 2a37 transporter, mo 96.3 0.16 3.5E-06 53.9 16.9 127 261-393 3-131 (273)
63 PRK10669 putative cation:proto 96.3 0.16 3.4E-06 60.0 18.1 131 257-393 13-144 (558)
64 PRK03659 glutathione-regulated 96.2 0.17 3.8E-06 60.1 18.3 115 255-373 10-125 (601)
65 COG0475 KefB Kef-type K+ trans 96.2 0.18 3.9E-06 56.8 17.1 144 254-405 10-159 (397)
66 PRK05274 2-keto-3-deoxyglucona 96.1 0.2 4.4E-06 54.4 16.0 46 97-142 55-100 (326)
67 COG0798 ACR3 Arsenite efflux p 96.1 1.7 3.6E-05 46.8 22.3 171 59-244 26-202 (342)
68 COG0786 GltS Na+/glutamate sym 95.9 1.2 2.6E-05 48.8 20.9 293 87-384 5-360 (404)
69 PF01758 SBF: Sodium Bile acid 95.9 0.62 1.3E-05 46.6 17.7 106 93-208 2-111 (187)
70 PF03601 Cons_hypoth698: Conse 95.8 0.31 6.8E-06 52.6 16.3 161 257-420 5-172 (305)
71 PF03616 Glt_symporter: Sodium 95.8 3.4 7.4E-05 46.0 24.7 95 274-370 247-343 (368)
72 PRK10490 sensor protein KdpD; 95.7 0.068 1.5E-06 66.5 12.3 124 443-592 248-372 (895)
73 PF03390 2HCT: 2-hydroxycarbox 95.7 1.5 3.3E-05 48.8 21.1 125 267-392 264-394 (414)
74 PRK05326 potassium/proton anti 95.2 0.37 8.1E-06 56.9 15.5 118 257-377 13-133 (562)
75 TIGR00698 conserved hypothetic 95.0 7 0.00015 42.8 25.6 84 49-141 28-115 (335)
76 COG2855 Predicted membrane pro 94.9 0.35 7.5E-06 52.0 12.6 115 267-384 30-144 (334)
77 PF03601 Cons_hypoth698: Conse 94.9 4.2 9.1E-05 44.0 21.0 126 59-204 35-165 (305)
78 TIGR00832 acr3 arsenical-resis 94.8 7.6 0.00017 42.5 23.5 99 92-201 46-149 (328)
79 COG3493 CitS Na+/citrate sympo 94.5 1.5 3.3E-05 47.6 16.0 85 306-392 326-413 (438)
80 TIGR00698 conserved hypothetic 94.5 1.4 3.1E-05 48.0 16.5 126 257-385 9-142 (335)
81 PLN03159 cation/H(+) antiporte 94.2 1.1 2.4E-05 55.2 16.6 136 608-752 456-612 (832)
82 TIGR00844 c_cpa1 na(+)/h(+) an 93.7 1.5 3.2E-05 52.8 15.7 70 306-377 75-146 (810)
83 TIGR00841 bass bile acid trans 93.7 12 0.00025 40.2 28.4 105 90-206 9-118 (286)
84 TIGR00783 ccs citrate carrier 93.6 13 0.00029 40.6 23.5 119 273-392 203-327 (347)
85 PF03956 DUF340: Membrane prot 93.6 1 2.2E-05 45.1 12.1 108 88-205 23-135 (191)
86 TIGR03082 Gneg_AbrB_dup membra 93.3 3 6.6E-05 40.4 14.6 120 258-384 3-125 (156)
87 TIGR00210 gltS sodium--glutama 92.8 20 0.00043 40.3 25.2 109 273-384 244-357 (398)
88 TIGR00831 a_cpa1 Na+/H+ antipo 92.4 1.7 3.6E-05 50.9 13.6 118 257-379 5-124 (525)
89 TIGR00930 2a30 K-Cl cotranspor 92.3 40 0.00086 42.5 39.2 99 443-562 573-676 (953)
90 COG2205 KdpD Osmosensitive K+ 91.8 0.81 1.8E-05 54.4 9.9 120 443-586 246-365 (890)
91 TIGR03136 malonate_biotin Na+- 90.4 3.7 8E-05 44.6 12.3 114 304-423 102-216 (399)
92 PRK10490 sensor protein KdpD; 90.3 2 4.3E-05 53.8 12.0 123 609-755 249-374 (895)
93 COG3180 AbrB Putative ammonia 90.3 32 0.00068 37.7 24.8 156 255-419 190-348 (352)
94 PF03977 OAD_beta: Na+-transpo 90.2 2.5 5.5E-05 45.3 10.8 112 305-423 67-179 (360)
95 PF03616 Glt_symporter: Sodium 89.8 2.5 5.5E-05 47.0 11.1 114 306-420 66-185 (368)
96 PRK04288 antiholin-like protei 88.1 32 0.0007 35.5 16.8 110 295-417 65-174 (232)
97 PF06826 Asp-Al_Ex: Predicted 87.6 12 0.00026 36.8 12.9 85 83-174 48-136 (169)
98 COG1346 LrgB Putative effector 87.5 35 0.00076 34.9 16.3 111 294-417 61-171 (230)
99 PRK03818 putative transporter; 87.3 6.9 0.00015 46.0 13.1 84 84-175 56-143 (552)
100 TIGR00210 gltS sodium--glutama 85.7 50 0.0011 37.2 18.2 114 306-419 66-184 (398)
101 cd01984 AANH_like Adenine nucl 85.3 2.4 5.3E-05 36.1 6.2 48 540-589 35-83 (86)
102 PF03956 DUF340: Membrane prot 85.3 4.6 0.0001 40.5 8.8 103 278-383 2-106 (191)
103 TIGR00946 2a69 he Auxin Efflux 83.2 13 0.00028 40.5 12.1 131 51-202 181-314 (321)
104 TIGR03802 Asp_Ala_antiprt aspa 82.8 12 0.00026 44.2 12.3 85 84-175 443-531 (562)
105 PRK03359 putative electron tra 82.3 6.1 0.00013 41.6 8.7 107 616-736 31-148 (256)
106 TIGR01625 YidE_YbjL_dupl AspT/ 82.1 15 0.00033 35.5 10.7 86 84-176 49-139 (154)
107 COG1883 OadB Na+-transporting 81.3 0.7 1.5E-05 48.1 1.2 114 305-425 82-196 (375)
108 TIGR01109 Na_pump_decarbB sodi 81.0 4.7 0.0001 43.1 7.1 113 304-423 60-179 (354)
109 PRK10711 hypothetical protein; 81.0 70 0.0015 33.1 15.4 109 296-417 61-169 (231)
110 COG0025 NhaP NhaP-type Na+/H+ 79.6 42 0.00091 38.2 15.0 122 257-381 13-138 (429)
111 PRK12460 2-keto-3-deoxyglucona 79.5 9.3 0.0002 41.1 8.9 49 93-141 196-244 (312)
112 COG0786 GltS Na+/glutamate sym 79.5 8 0.00017 42.6 8.5 114 305-419 67-185 (404)
113 PRK12342 hypothetical protein; 78.6 9.3 0.0002 40.2 8.5 98 616-725 30-137 (254)
114 TIGR00659 conserved hypothetic 78.4 86 0.0019 32.3 16.5 108 297-417 61-168 (226)
115 PRK15475 oxaloacetate decarbox 78.2 3.1 6.6E-05 45.1 4.8 117 304-423 131-250 (433)
116 COG4651 RosB Kef-type K+ trans 77.9 12 0.00025 39.8 8.7 119 255-379 11-132 (408)
117 PRK15477 oxaloacetate decarbox 77.6 3.2 7E-05 44.9 4.8 117 304-423 131-250 (433)
118 PRK15476 oxaloacetate decarbox 77.6 3.2 7E-05 44.9 4.8 117 304-423 131-250 (433)
119 TIGR03802 Asp_Ala_antiprt aspa 76.4 11 0.00023 44.6 9.2 88 275-363 416-509 (562)
120 cd01984 AANH_like Adenine nucl 76.1 9.5 0.00021 32.4 6.6 33 613-646 1-33 (86)
121 PF00999 Na_H_Exchanger: Sodiu 75.1 0.73 1.6E-05 51.4 -0.9 112 260-375 6-123 (380)
122 COG3180 AbrB Putative ammonia 73.9 83 0.0018 34.5 14.3 126 254-389 10-139 (352)
123 COG2205 KdpD Osmosensitive K+ 73.7 19 0.0004 43.5 10.0 124 610-755 248-374 (890)
124 KOG2310 DNA repair exonuclease 73.3 4.4 9.6E-05 46.0 4.6 83 542-624 41-132 (646)
125 COG5505 Predicted integral mem 72.7 1.4E+02 0.0031 32.0 25.2 279 83-392 54-357 (384)
126 PRK04972 putative transporter; 72.4 9.7 0.00021 44.9 7.5 86 84-176 438-527 (558)
127 COG2855 Predicted membrane pro 71.6 1.6E+02 0.0035 32.2 20.7 65 88-162 69-133 (334)
128 COG2086 FixA Electron transfer 68.4 15 0.00034 38.6 7.2 107 616-738 32-149 (260)
129 PF03547 Mem_trans: Membrane t 68.3 34 0.00074 38.0 10.6 105 277-384 9-116 (385)
130 PRK03818 putative transporter; 67.4 77 0.0017 37.4 13.5 82 84-172 428-514 (552)
131 PRK09903 putative transporter 66.9 62 0.0013 35.1 11.9 106 51-174 172-279 (314)
132 PF01012 ETF: Electron transfe 65.9 13 0.00028 36.1 5.8 83 621-714 15-102 (164)
133 COG2985 Predicted permease [Ge 65.7 19 0.00041 40.8 7.5 78 92-177 62-146 (544)
134 PF04172 LrgB: LrgB-like famil 64.9 1.7E+02 0.0037 30.0 14.8 107 297-416 51-157 (215)
135 COG3263 NhaP-type Na+/H+ and K 64.2 87 0.0019 35.3 11.9 68 306-374 64-131 (574)
136 COG3329 Predicted permease [Ge 61.0 1.3E+02 0.0029 32.1 12.1 121 274-397 16-136 (372)
137 TIGR02432 lysidine_TilS_N tRNA 59.1 58 0.0013 32.1 9.2 36 612-647 1-36 (189)
138 PF05145 AmoA: Putative ammoni 57.9 1.1E+02 0.0024 33.4 11.7 131 277-419 2-136 (318)
139 TIGR01625 YidE_YbjL_dupl AspT/ 56.7 39 0.00085 32.7 7.1 88 276-363 23-116 (154)
140 COG4827 Predicted transporter 56.2 2.3E+02 0.005 28.6 12.3 49 89-137 9-59 (239)
141 PRK04125 murein hydrolase regu 55.0 1.3E+02 0.0028 28.7 10.0 28 310-338 69-98 (141)
142 KOG0573 Asparagine synthase [A 54.3 95 0.0021 35.0 10.2 102 573-686 224-327 (520)
143 TIGR00840 b_cpa1 sodium/hydrog 53.5 2.6E+02 0.0056 33.1 14.6 74 306-381 69-151 (559)
144 COG1646 Predicted phosphate-bi 52.8 65 0.0014 33.2 8.1 60 529-592 16-76 (240)
145 PF13593 DUF4137: SBF-like CPA 50.4 2.2E+02 0.0047 31.0 12.5 91 277-370 7-98 (313)
146 PF07905 PucR: Purine cataboli 49.7 1.1E+02 0.0024 28.2 8.7 97 474-583 21-120 (123)
147 COG2985 Predicted permease [Ge 49.2 44 0.00096 38.0 6.8 85 84-176 423-511 (544)
148 COG3969 Predicted phosphoadeno 45.6 47 0.001 36.0 6.0 57 609-672 26-83 (407)
149 TIGR00832 acr3 arsenical-resis 44.6 3.2E+02 0.007 29.8 12.8 67 317-385 56-127 (328)
150 PRK04972 putative transporter; 44.3 1.8E+02 0.0039 34.4 11.5 76 90-173 61-140 (558)
151 PF01171 ATP_bind_3: PP-loop f 43.5 1.1E+02 0.0025 30.0 8.4 57 612-673 1-57 (182)
152 TIGR00808 malonate_madM malona 43.5 43 0.00093 33.6 5.0 45 100-144 90-134 (254)
153 COG0679 Predicted permeases [G 42.5 4.7E+02 0.01 28.2 13.8 138 276-416 11-150 (311)
154 TIGR03136 malonate_biotin Na+- 42.3 5.2E+02 0.011 28.7 17.9 75 254-332 232-306 (399)
155 PRK05253 sulfate adenylyltrans 41.4 92 0.002 33.7 7.8 37 611-647 28-64 (301)
156 PF05684 DUF819: Protein of un 41.3 3.5E+02 0.0075 30.3 12.5 97 301-402 52-152 (378)
157 KOG2082 K+/Cl- cotransporter K 41.2 7.5E+02 0.016 30.2 17.6 116 531-649 754-875 (1075)
158 KOG1650 Predicted K+/H+-antipo 40.4 3.7E+02 0.008 33.2 13.5 66 92-164 313-378 (769)
159 TIGR02039 CysD sulfate adenyly 38.8 91 0.002 33.6 7.2 36 612-647 21-56 (294)
160 PF03547 Mem_trans: Membrane t 37.8 2.4E+02 0.0053 31.2 10.9 87 275-362 244-335 (385)
161 TIGR00793 kdgT 2-keto-3-deoxyg 35.5 1.7E+02 0.0037 31.5 8.4 49 93-141 201-249 (314)
162 cd01985 ETF The electron trans 34.2 2.2E+02 0.0047 27.9 8.7 92 620-725 18-116 (181)
163 PF06826 Asp-Al_Ex: Predicted 34.0 4E+02 0.0088 26.1 10.3 90 273-363 22-115 (169)
164 PRK09903 putative transporter 33.3 6.4E+02 0.014 27.1 14.3 135 275-418 173-310 (314)
165 COG1597 LCB5 Sphingosine kinas 33.2 51 0.0011 35.6 4.3 53 683-736 38-91 (301)
166 PF08659 KR: KR domain; Inter 32.4 3.4E+02 0.0074 26.5 9.8 86 616-713 4-92 (181)
167 PRK12933 secD preprotein trans 32.2 8.9E+02 0.019 28.9 14.3 16 228-243 581-596 (604)
168 cd01992 PP-ATPase N-terminal d 32.2 2.1E+02 0.0045 27.9 8.2 57 612-673 1-57 (185)
169 PRK12563 sulfate adenylyltrans 29.3 1.1E+02 0.0024 33.1 6.0 36 611-646 38-73 (312)
170 KOG1965 Sodium/hydrogen exchan 28.3 1.3E+02 0.0029 35.1 6.6 71 306-378 102-179 (575)
171 TIGR02185 Trep_Strep conserved 28.2 6.1E+02 0.013 25.3 16.3 84 273-358 84-184 (189)
172 cd01993 Alpha_ANH_like_II This 27.9 2.3E+02 0.005 27.4 7.7 37 612-648 1-39 (185)
173 PRK01658 holin-like protein; V 27.8 4.9E+02 0.011 24.1 9.9 17 310-326 66-84 (122)
174 cd01455 vWA_F11C1-5a_type Von 27.7 2.2E+02 0.0049 28.5 7.4 71 611-699 112-185 (191)
175 PF03652 UPF0081: Uncharacteri 27.6 1.8E+02 0.0038 27.4 6.4 58 539-597 37-97 (135)
176 PF05982 DUF897: Domain of unk 26.7 6.1E+02 0.013 27.7 10.8 67 335-401 57-123 (327)
177 PF02601 Exonuc_VII_L: Exonucl 26.0 1.3E+02 0.0028 32.7 5.9 27 688-714 56-87 (319)
178 PF09605 Trep_Strep: Hypotheti 25.8 6.7E+02 0.014 24.9 17.1 125 229-358 40-181 (186)
179 PRK01821 hypothetical protein; 25.7 5.7E+02 0.012 24.1 10.4 17 310-326 71-89 (133)
180 PF03812 KdgT: 2-keto-3-deoxyg 25.3 2.2E+02 0.0049 30.7 7.2 70 59-141 180-249 (314)
181 TIGR02230 ATPase_gene1 F0F1-AT 25.0 1.4E+02 0.0031 26.6 4.8 38 125-162 51-89 (100)
182 cd01471 vWA_micronemal_protein 24.8 2E+02 0.0044 28.0 6.7 74 612-699 110-185 (186)
183 COG0385 Predicted Na+-dependen 24.5 9.4E+02 0.02 26.2 12.6 78 307-386 41-122 (319)
184 KOG2718 Na+-bile acid cotransp 24.2 5.5E+02 0.012 28.6 10.2 31 93-123 117-147 (371)
185 COG2431 Predicted membrane pro 23.9 9E+02 0.02 25.8 12.5 53 88-141 131-188 (297)
186 PF03613 EIID-AGA: PTS system 23.7 1.6E+02 0.0035 31.2 5.8 21 269-289 58-78 (264)
187 PRK09765 PTS system 2-O-a-mann 23.4 1.3E+03 0.029 27.6 16.8 23 220-242 420-442 (631)
188 smart00046 DAGKc Diacylglycero 23.2 1.5E+02 0.0033 27.2 5.0 42 694-736 42-86 (124)
189 PRK11103 PTS system mannose-sp 22.9 4.4E+02 0.0096 28.2 8.9 20 269-288 69-88 (282)
190 TIGR03248 galactar-dH20 galact 22.9 3.6E+02 0.0079 31.3 8.8 106 621-740 173-296 (507)
191 PRK00109 Holliday junction res 22.8 1.2E+02 0.0026 28.7 4.2 55 541-596 42-98 (138)
192 PF03686 UPF0146: Uncharacteri 22.7 1.2E+02 0.0026 28.2 4.1 34 529-562 71-104 (127)
193 cd01452 VWA_26S_proteasome_sub 22.1 3.6E+02 0.0078 26.9 7.7 38 611-649 108-147 (187)
194 PRK07102 short chain dehydroge 22.0 4.4E+02 0.0096 26.6 8.9 79 620-712 8-86 (243)
195 PF11299 DUF3100: Protein of u 22.0 1E+02 0.0022 31.7 3.8 142 52-208 22-166 (241)
196 PRK12911 bifunctional preprote 21.6 1.9E+03 0.04 28.9 15.0 16 228-243 1049-1064(1403)
197 PF13829 DUF4191: Domain of un 21.5 2.3E+02 0.0051 29.1 6.2 49 109-164 18-66 (224)
198 KOG2575 Glucosyltransferase - 21.5 1.2E+03 0.026 26.3 13.8 149 261-427 198-353 (510)
199 PF03977 OAD_beta: Na+-transpo 21.2 1.1E+03 0.024 25.9 21.0 76 254-332 194-269 (360)
200 PRK13057 putative lipid kinase 21.1 1.3E+02 0.0027 32.1 4.6 53 681-735 29-81 (287)
201 COG2431 Predicted membrane pro 21.0 1E+03 0.022 25.4 20.9 46 338-383 168-213 (297)
202 COG1346 LrgB Putative effector 20.8 9.4E+02 0.02 24.8 12.2 58 83-142 60-117 (230)
203 COG1570 XseA Exonuclease VII, 20.5 69 0.0015 36.2 2.4 27 688-714 177-205 (440)
204 COG0239 CrcB Integral membrane 20.3 6.6E+02 0.014 23.4 8.5 74 277-354 43-119 (126)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=2.2e-139 Score=1248.24 Aligned_cols=721 Identities=35% Similarity=0.641 Sum_probs=653.1
Q ss_pred ccccccccccccccccccccccccCchhHHHh----------------------------hheeecccccCCcccccccc
Q 044163 27 TCILFNKTTVYSKGISLDEKVVTSVLPVVMIQ----------------------------SGIIMGRSVFGKNKIYQDIM 78 (783)
Q Consensus 27 ~c~~~~~~~~~~~Gi~~g~~~~~~~lP~l~~~----------------------------aGiilGPs~lg~~~~~~~~l 78 (783)
.|+..++. +|+|+|+|+||+++.+|.++.| +|+++||+++|+++.+.+.+
T Consensus 18 ~c~~~~~~--~s~g~~~g~~pl~~~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~ 95 (832)
T PLN03159 18 VCYAPMMI--TTNGIWQGDNPLDFSLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTI 95 (832)
T ss_pred ccccCCCc--cCCcccccCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhc
Confidence 59954455 9999999999999999988777 99999999999999899999
Q ss_pred ccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH
Q 044163 79 YRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISF 158 (783)
Q Consensus 79 fp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~ 158 (783)
||.++.+.+++++++|++++||++|+|+|++.+||++|+++.+|++++++|+++|+++++++.............+++|+
T Consensus 96 fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~~~~~~l~~g~ 175 (832)
T PLN03159 96 FPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTGKKALAIAIAGMALPFCIGLAFSFIFHQVSRNVHQGTFILFLGV 175 (832)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHH
Confidence 99888889999999999999999999999999999999999999999999999999888877432111122356789999
Q ss_pred HHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 159 LASRSSFAVVVDAISELKLLNSELGQLTMSTAVIHEILGWLNSILSQLMRG-G-LQRILVVHVGAVCALSIFTIIVLRLM 236 (783)
Q Consensus 159 ~ls~TS~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~~-~-~~~~~~~~~~~~i~f~~~~~~v~r~~ 236 (783)
++|.||+||++++|+|+|+++++.||+++++++++|+++|++++++.++.. + +....++.++..++|++++.+++||+
T Consensus 176 alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~r~~ 255 (832)
T PLN03159 176 ALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVVRPG 255 (832)
T ss_pred HHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998877652 2 22335566777778888889999999
Q ss_pred HHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 044163 237 IEWIIRRTPERKPVKDVYIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIR 316 (783)
Q Consensus 237 ~~~l~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~ 316 (783)
+.|+.||.+++++.+|.++.++++++++++++++.+|+|+++|||++|+++|+. |+++++.+|++++++++|+|+||++
T Consensus 256 ~~~~~r~~~~~~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~~-~~~~~l~ekle~~~~~lflPlFFv~ 334 (832)
T PLN03159 256 IWWIIRRTPEGETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPNG-PLGVTLIEKLEDFVSGLLLPLFFAI 334 (832)
T ss_pred HHHHHHhCcCCCCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCCc-chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888889999999999999999999999999999999999985 8899999999999999999999999
Q ss_pred hcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccchhhH
Q 044163 317 LGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDIQTF 396 (783)
Q Consensus 317 ~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~~~f 396 (783)
+||++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++|++||+++++++++|++.|+++++.|
T Consensus 335 vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~~~~f 414 (832)
T PLN03159 335 SGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLDDESF 414 (832)
T ss_pred hhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccCchhh
Confidence 99999998873333465566777888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHhccccchhhhhccccccccccccCCCCCceeEEEEeecCCChHHHHHHHHhhCCCCCCCc
Q 044163 397 SELVLSNLVLTAIVTPLIAIFYKPQRRLESIARVDNCIRTLRTTLPSSELRILCCIHHEDNVNGIITLLRATNPTEMNPI 476 (783)
Q Consensus 397 ~~lv~~~vl~t~i~~pl~~~l~~~~~~~~~~~~~~~~~r~i~~~~~~~elrILv~v~~~~~~~~ll~l~~~~~~~~~~p~ 476 (783)
++++++++++|.+++|++.++|||+||+..||+ |++++.++++|+|||+|+|+||++++|++|++++++++++|.
T Consensus 415 ~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~-----r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~ 489 (832)
T PLN03159 415 AVMVLVAVAMTALITPVVTVVYRPARRLVGYKR-----RTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPI 489 (832)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCHHhhhccccc-----cccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCc
Confidence 999999998899999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred eEEEEEeeccCCCCCcccccccccc-cc----cccchhHHHHHHHHHHhhcCCCCeEEEEEEEEcCCCChHHHHHHHHHh
Q 044163 477 CAYPVHLKDLAGRAAPVVLPYNTQK-YK----LASNATDRIMRAVIKYSRSSGPAVAVQPFIMISPYDTMHQSICRLLKD 551 (783)
Q Consensus 477 ~v~~lhlvel~~r~~~~~~~~~~~~-~~----~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e 551 (783)
++|++||+|+++|++|.+++|+.++ .. ....++|+++++|+.|++++ +.|+++++|+|||+++||+|||++|+|
T Consensus 490 ~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~vs~~~~mh~dIc~~A~d 568 (832)
T PLN03159 490 CIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQPLTAISPYSTMHEDVCNLAED 568 (832)
T ss_pred eEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHHHHHhhc-CceEEEEEEEEeCcccHHHHHHHHHHh
Confidence 9999999999999999999998754 11 12345899999999999754 689999999999999999999999999
Q ss_pred cCCCEEEEccc----CCCcccCCCcchhHHHHHHhccCCCceEEEecCCCCccccccccCCcccEEEEeccCCccHHHHH
Q 044163 552 KFIPLILVPLF----PNGEVQGPNGTLHNFNINILHYAPCTVGIFVDRGLNSCINTAKSAKFCYNVAVFFIGGPDDREAM 627 (783)
Q Consensus 552 ~~a~lIIlp~h----~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIlVdRg~~~~~~~~~~~~~~~~I~v~f~GG~ddreAL 627 (783)
|++++||+||| .||++++.+..+|.+|++||++||||||||||||.. +.......+..+||+++|+|||||||||
T Consensus 569 ~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~-~~~~~~~~~~~~~v~~~F~GG~DDREAL 647 (832)
T PLN03159 569 KRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLS-GATRLASNQVSHHVAVLFFGGPDDREAL 647 (832)
T ss_pred cCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCC-ccccccccccceeEEEEecCCcchHHHH
Confidence 99999999999 488888888999999999999999999999999976 2222223345689999999999999999
Q ss_pred HHHHHHhcCCCeEEEEEEeeecCccc--------------------ccchhhhhHHHHHHHHHhhcCCCCCEEEEEEEec
Q 044163 628 ALVSRMSGHPGVSITVFRINLEENIV--------------------ENESEKHIDEVVMNEFVASNFGNASVVCRQIVAN 687 (783)
Q Consensus 628 ~~a~rma~~~~~~ltv~~~~~~~~~~--------------------~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~ 687 (783)
+||+|||+||++++||+||++.+... +++.|+++||++++||+.++..+++|.|+||+|+
T Consensus 648 a~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~y~E~~V~ 727 (832)
T PLN03159 648 AYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIVYTEKVVS 727 (832)
T ss_pred HHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceEEEEEecC
Confidence 99999999999999999998653211 1356888999999999999987899999999999
Q ss_pred ChHHHHHHHHhhccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEEeeecc
Q 044163 688 DTKQLVSAVRSLERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVIQSVES 758 (783)
Q Consensus 688 ~~~e~~~~i~~~~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVvqq~~~ 758 (783)
|++|++++||+++++|||+||||+|+..|++|+||+||+||||||+|||+|||+|| .+++||||||||+.
T Consensus 728 ~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~~w~e~pELG~iGD~LaS~d~-~~~~SVLVvQQ~~~ 797 (832)
T PLN03159 728 NGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLTDWSECPELGAIGDLLASSDF-AATVSVLVVQQYVG 797 (832)
T ss_pred CHHHHHHHHHHhhccCcEEEEecCCCCCcchhccccccccCCccchhhhHHhcCCC-CCceeEEEEEeecc
Confidence 99999999999998999999999988779999999999999999999999999999 99999999999974
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.1e-111 Score=987.16 Aligned_cols=712 Identities=33% Similarity=0.568 Sum_probs=646.9
Q ss_pred ccccccccccccccCchhHHHh----------------------------hheeecccccCCccccccccccccchHHHH
Q 044163 37 YSKGISLDEKVVTSVLPVVMIQ----------------------------SGIIMGRSVFGKNKIYQDIMYRGREMLVVN 88 (783)
Q Consensus 37 ~~~Gi~~g~~~~~~~lP~l~~~----------------------------aGiilGPs~lg~~~~~~~~lfp~~~~~~l~ 88 (783)
.+.|.|.|++|+++.+|.++.| +||++||+.+|.++.+.+.+||..+...++
T Consensus 6 ~~~g~~~~~~~~~~~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s~~~l~ 85 (769)
T KOG1650|consen 6 TSNGVFPGVNPLKYALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSSMIVLE 85 (769)
T ss_pred ccCCcccCCCccccccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccchHHHHH
Confidence 7899999999999999999998 999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-cc-c---hhhHHHHHHHHHhhc
Q 044163 89 TLATMGGIYFVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVP-RI-N---LKRFYFYISFLASRS 163 (783)
Q Consensus 89 ~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~-~~-~---~~~~~l~lg~~ls~T 163 (783)
+++.+|+.+++|+.|+|+|.+.+++.+|++..+|+.++++|+..|..+...+..... .. . ...+..++..+++.|
T Consensus 86 ~~~~lg~~~f~Fl~gl~~d~~~i~~~~kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~t 165 (769)
T KOG1650|consen 86 LLANLGFLFFLFLMGLEIDLRVIRRTGKKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFILSAQSIT 165 (769)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhccCceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999888877654332 11 1 112567788999999
Q ss_pred cHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc-C--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 164 SFAVVVDAISELKLLNSELGQLTMSTAVIHEILGWLNSILSQLMRG-G--LQRILVVHVGAVCALSIFTIIVLRLMIEWI 240 (783)
Q Consensus 164 S~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~~-~--~~~~~~~~~~~~i~f~~~~~~v~r~~~~~l 240 (783)
|+|+++++|.|+|++++++||+++++++++|+++|.++++..+..+ . +.....|.+...++|++++.+++||++.|+
T Consensus 166 sfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~p~~~wi 245 (769)
T KOG1650|consen 166 SFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVVRPLMKWI 245 (769)
T ss_pred hhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeehhhhHHHH
Confidence 9999999999999999999999999999999999998888877763 2 233456778888889999999999999999
Q ss_pred HHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcc
Q 044163 241 IRRTPERKPVKDVYIIAIMIGAITLGFIYEGLN-SNYMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQ 319 (783)
Q Consensus 241 ~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG-~~~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~ 319 (783)
.||+|++++.++.+...++..+++++.+++.++ +|+++|||+.|+++|+++|+++.+.+|+|++.+++|+|+||+.+|+
T Consensus 246 ~kr~pe~~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llPl~~~~~G~ 325 (769)
T KOG1650|consen 246 IKRTPEGKPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLPLYFAISGL 325 (769)
T ss_pred hhcCCCCCccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccchhhHHHH
Q 044163 320 LTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDIQTFSEL 399 (783)
Q Consensus 320 ~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~~~f~~l 399 (783)
++|+..+ .. |......+...+++|++++..++.++|+|+||++.+|++|++||.++++.++.+++.|+++++.|+++
T Consensus 326 k~di~~i-~~--~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~~~~~f~~~ 402 (769)
T KOG1650|consen 326 KTDISRI-NK--WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKILSDEGFTVM 402 (769)
T ss_pred ceeHHHH-HH--HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCcccchHHHH
Confidence 9999988 32 76677778888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHhccccchhhhhccccccccccccCCCCCceeEEEEeecCCChHHHHHHHHhhCCCCCCCceEE
Q 044163 400 VLSNLVLTAIVTPLIAIFYKPQRRLESIARVDNCIRTLRTTLPSSELRILCCIHHEDNVNGIITLLRATNPTEMNPICAY 479 (783)
Q Consensus 400 v~~~vl~t~i~~pl~~~l~~~~~~~~~~~~~~~~~r~i~~~~~~~elrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~ 479 (783)
+++++++|.++||+++.+|+|.|++.+|++ |++++.++++++|+|.|+|+|+++++++++++++.+++++|.+++
T Consensus 403 vl~alv~t~I~~~~l~~~y~p~~~~~~y~~-----~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~~v~ 477 (769)
T KOG1650|consen 403 VLMALVSTFITPPLLMFLYDPTRKYHGYKK-----RGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPLSVY 477 (769)
T ss_pred HHHHHHHHhhHHHHHHHhcchhhhcCceEe-----ehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCccee
Confidence 999999999999999999999999999999 999999999999999999999999999999999999887799999
Q ss_pred EEEeeccCCCCCccccccccccc---ccccchhHHHHHHHHHHhhcCCCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCE
Q 044163 480 PVHLKDLAGRAAPVVLPYNTQKY---KLASNATDRIMRAVIKYSRSSGPAVAVQPFIMISPYDTMHQSICRLLKDKFIPL 556 (783)
Q Consensus 480 ~lhlvel~~r~~~~~~~~~~~~~---~~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~l 556 (783)
++|++|+.+|+.|.+++|+.++. +.....++++..+|+.|++.+...|.++++|+++|+++||+|||.+|.++++++
T Consensus 478 ~lhlveL~~~~~~~li~h~~~~~~~~~~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~la~~~~~~l 557 (769)
T KOG1650|consen 478 ALHLVELVGRATPLLISHKLRKNGRVESRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTLALDKGVSL 557 (769)
T ss_pred eeeeeecccccchhhhhhhhccccccccccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHHHHhhCCcE
Confidence 99999999999999999987642 123344679999999999854457999999999999999999999999999999
Q ss_pred EEEccc---C-CCcccCCCcchhHHHHHHhccCCCceEEEecCCCCccccccccCCcccEEEEeccCCccHHHHHHHHHH
Q 044163 557 ILVPLF---P-NGEVQGPNGTLHNFNINILHYAPCTVGIFVDRGLNSCINTAKSAKFCYNVAVFFIGGPDDREAMALVSR 632 (783)
Q Consensus 557 IIlp~h---~-~g~~~~~~~~~~~~~~~Vl~~ApCsVgIlVdRg~~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~a~r 632 (783)
|++||| . +|.+++.+..+|.+|++|+++|||||||+|||| +++.......++.++|++.|+||+||||||++++|
T Consensus 558 iilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg-~~~~~~~~~~~~~~~v~~lF~GG~DDrEALa~~~r 636 (769)
T KOG1650|consen 558 IILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRG-LRRSGVTQKRGSSYKVVVLFLGGKDDREALALAKR 636 (769)
T ss_pred EEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecC-cccccceecccceeEEEEEecCChhhHHHHHHHHH
Confidence 999999 3 447888889999999999999999999999998 32222222334678999999999999999999999
Q ss_pred HhcCCCeEEEEEEeeecCcccc----cchhhhhHHHHHHHH-HhhcCCCCCEEEE-EEEecChHHHHHHHHhhccCCcEE
Q 044163 633 MSGHPGVSITVFRINLEENIVE----NESEKHIDEVVMNEF-VASNFGNASVVCR-QIVANDTKQLVSAVRSLERSNDLV 706 (783)
Q Consensus 633 ma~~~~~~ltv~~~~~~~~~~~----~~~~~~~d~~~l~~~-~~~~~~~~~v~~~-e~~v~~~~e~~~~i~~~~~~~DLv 706 (783)
|++||++++||+|+.++++..+ +++++.+|++..+++ +..+..+.++.|. |+++.++.||.++++++.++|||+
T Consensus 637 m~~~~~v~lTVirf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~~~~et~~~~~~~~~~ydL~ 716 (769)
T KOG1650|consen 637 MAENPRVTLTVIRFFPDESKYNRKVLVEVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVLNGAETTALLRSITEDYDLF 716 (769)
T ss_pred HhhCCceEEEEEEeeccchhhcccccchhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHhcchhHHHHHHHhccccceE
Confidence 9999999999999997543222 467788888888888 6555556788888 699999999999999999999999
Q ss_pred EEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEEeeecc
Q 044163 707 IVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVIQSVES 758 (783)
Q Consensus 707 IVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVvqq~~~ 758 (783)
+|||+++..++.+.|++||+||||||+|||.|+|+|| +.+.||||+|||..
T Consensus 717 ivGr~~~~~~~~t~gl~~W~e~pELg~IGd~las~~~-~~~~svlvvqq~~~ 767 (769)
T KOG1650|consen 717 IVGRSHGMLSEATGGLSEWSECPELGVIGDLLASSDF-SSKVSVLVVQQQLY 767 (769)
T ss_pred EEecccccccchhcCchhcccCccccccCcccccccc-CccceEEEEEeeec
Confidence 9999999999999999999999999999999999999 99999999999865
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=6.5e-45 Score=425.23 Aligned_cols=356 Identities=15% Similarity=0.192 Sum_probs=294.4
Q ss_pred ccccccccCchhHHHh--hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHH
Q 044163 43 LDEKVVTSVLPVVMIQ--SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWN 120 (783)
Q Consensus 43 ~g~~~~~~~lP~l~~~--aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~ 120 (783)
.+...+|+++|.+++| +|+++||+++|+++ ..+.++.++++|++++||.+|+|+|++.+++.+|+++.
T Consensus 20 ~~~l~~rl~lp~vlgyilaGillGP~~lg~i~----------~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~ 89 (621)
T PRK03562 20 IVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVT----------DVESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFG 89 (621)
T ss_pred HHHHHHHhCCChHHHHHHHHHHhCcccccCCC----------CHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH
Confidence 3566789999999999 99999999999863 45668999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHH
Q 044163 121 VSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSSFAVVVDAISELKLLNSELGQLTMSTAVIHEILGWLN 200 (783)
Q Consensus 121 i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~il 200 (783)
+|..++++|+++++.++++++.. |..++++|.+++.||+++++++|+|+|+++++.||.++++++++|++++++
T Consensus 90 ~g~~qv~~~~~~~~~~~~~~g~~------~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~Dl~~i~l 163 (621)
T PRK03562 90 GGALQMVACGGLLGLFCMLLGLR------WQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQDIAAIPL 163 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888777543 578999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc--Ch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhH
Q 044163 201 SILSQLMRG--GL--QRILVVHVGAVCALSIFTIIVLRLMIEWIIRRTPERKPVKDVYIIAIMIGAITLGFIYEGLNSNY 276 (783)
Q Consensus 201 l~v~~~~~~--~~--~~~~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~ 276 (783)
++++..+.. ++ .......++..++++++.++++|++.+++.++..+. +.+|.+...+++++++++++++.+|+|+
T Consensus 164 l~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~~-~~~e~~~~~~l~lv~~~a~la~~~Gls~ 242 (621)
T PRK03562 164 VAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVARS-GLREVFTAVALFLVFGFGLLMEEVGLSM 242 (621)
T ss_pred HHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHHHHHHHhCccH
Confidence 988866542 11 111122222222333333333344444433332211 2367788888889999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044163 277 MIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLIS 356 (783)
Q Consensus 277 ~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~ 356 (783)
++|||++|+++++. ++++++.++++++ .++|+|+||+++||++|+..+ .. .|+.++.++++.+++|++++++.+++
T Consensus 243 ~lGAFlAGl~l~~~-~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l-~~-~~~~il~~~~~~~~~K~~~~~~~~~~ 318 (621)
T PRK03562 243 ALGAFLAGVLLASS-EYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTL-LE-NPLRILILLLGFLAIKIAMLWLLARP 318 (621)
T ss_pred HHHHHHHHHHhcCC-ccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999996 7899999999998 799999999999999999887 32 34345556667889999999999999
Q ss_pred cCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccchhhHHHHHHHHHHHHHhHHHHHHHhccc
Q 044163 357 FKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIFYKP 420 (783)
Q Consensus 357 ~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l~~~ 420 (783)
+|+++++++.+|++|+++|+++++++.++.+.|+++++.|+.+++++++ |.+.+|++..+|++
T Consensus 319 ~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~l-S~~~tP~l~~~~~~ 381 (621)
T PRK03562 319 LGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVAL-SMAATPLLLVLLDR 381 (621)
T ss_pred hCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhhhH
Confidence 9999999999999999999999999999999999999999999987777 55555566555643
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=7.9e-45 Score=423.14 Aligned_cols=358 Identities=17% Similarity=0.237 Sum_probs=307.0
Q ss_pred ccccccccccCchhHHHh--hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhH
Q 044163 41 ISLDEKVVTSVLPVVMIQ--SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKT 118 (783)
Q Consensus 41 i~~g~~~~~~~lP~l~~~--aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~ 118 (783)
...+...+|+++|.+++| +|+++||+++|..+ ..+.++.++++|++++||.+|+|+|++.+++.++..
T Consensus 19 ~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~----------~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~ 88 (558)
T PRK10669 19 FILGMLANRLRISPLVGYLLAGVLAGPFTPGFVA----------DTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIA 88 (558)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhCcccccccc----------chHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHH
Confidence 344677789999999999 99999999999752 346789999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHH
Q 044163 119 WNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSSFAVVVDAISELKLLNSELGQLTMSTAVIHEILGW 198 (783)
Q Consensus 119 ~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ 198 (783)
+..++.++++|++++++++++++.. +..++++|.+++.||+++++++|+|+|+++++.||+++++++++|+.++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~Dl~~i 162 (558)
T PRK10669 89 IPGAIAQIAVATLLGMALSAVLGWS------LMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVEDLVMV 162 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHHHHHH
Confidence 8788889999999988888777643 4788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc----C--hhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHH
Q 044163 199 LNSILSQLMRG----G--LQR----ILVVHVGAVCALSIFTIIVLRLMIEWIIRRTPERKPVKDVYIIAIMIGAITLGFI 268 (783)
Q Consensus 199 ill~v~~~~~~----~--~~~----~~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~l~~~~l 268 (783)
++++++..+.+ + +.. ...+.++..+++++++.++.|++.+|+.++.++.+ .+|.+...++++++++++.
T Consensus 163 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~~~l~~l~~~l~~a~~ 241 (558)
T PRK10669 163 LTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAATG-SRELFTLSVLALALGIAFG 241 (558)
T ss_pred HHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHH
Confidence 99888765431 1 111 12344556667777788899999999999876543 4677787788888888764
Q ss_pred -HHHhchhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHH
Q 044163 269 -YEGLNSNYMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKV 347 (783)
Q Consensus 269 -ae~lG~~~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~ 347 (783)
++.+|+|+++|||++|+++|+. +.++++.+...++ .++|+|+||+++|+++|+..+ . ..+...+.++++.+++|+
T Consensus 242 ~~~~lGls~~lGAflaGl~l~~~-~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l-~-~~~~~~~~~~~~~~v~K~ 317 (558)
T PRK10669 242 AVELFDVSFALGAFFAGMVLNES-ELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMIL-I-QQPLAVLATLAIIVFGKS 317 (558)
T ss_pred HHHHcCccHHHHHHHHHHHHhCC-hhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHH-H-HHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999986 6788888777776 789999999999999999877 2 233344556667889999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccchhhHHHHHHHHHHHHHhHHHHHHHhcc
Q 044163 348 VGCILGLISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIFYK 419 (783)
Q Consensus 348 ~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l~~ 419 (783)
+++++.++++|+++|+++.+|++|++||+++++++.+|++.|+++++.|+++++++++|++++|.+.+...|
T Consensus 318 ~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~ 389 (558)
T PRK10669 318 LAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLER 389 (558)
T ss_pred HHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999999999999999999999999999999999999999999988888888877654
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=3e-44 Score=419.10 Aligned_cols=355 Identities=15% Similarity=0.171 Sum_probs=292.2
Q ss_pred ccccccccCchhHHHh--hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHH
Q 044163 43 LDEKVVTSVLPVVMIQ--SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWN 120 (783)
Q Consensus 43 ~g~~~~~~~lP~l~~~--aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~ 120 (783)
.+....|+++|.+++| +|+++||+++|.++ ..+.+..++++|++++||.+|+|+|++.+++.+|+++.
T Consensus 20 ~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~----------~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~ 89 (601)
T PRK03659 20 AVPLAQRLGIGAVLGYLLAGIAIGPWGLGFIS----------DVDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFG 89 (601)
T ss_pred HHHHHHHhCCChHHHHHHHHHHhccccccCCC----------cHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3566789999999999 99999999999863 34568899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHH
Q 044163 121 VSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSSFAVVVDAISELKLLNSELGQLTMSTAVIHEILGWLN 200 (783)
Q Consensus 121 i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~il 200 (783)
+|..++++|+++++.+.++++.. |..++++|.+++.||++++.++|+|+|+++++.||++++.++++|+.++++
T Consensus 90 ~g~~~v~~t~~~~~~~~~~~g~~------~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~Di~~i~l 163 (601)
T PRK03659 90 VGAAQVLLSAAVLAGLLMLTDFS------WQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAVIPA 163 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHccC------HHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHHHHHHH
Confidence 99999999998877766655432 578899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-C-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHH
Q 044163 201 SILSQLMRG-G-LQRILVVHVGAVCALSIFTIIVLRLMIEWIIRRTPERKPVKDVYIIAIMIGAITLGFIYEGLNSNYMI 278 (783)
Q Consensus 201 l~v~~~~~~-~-~~~~~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~~l 278 (783)
++++..+.+ + +...+. .++..++.+++.+++.|++.+++.++..+ .+.+|.++..+++++++++++++.+|+|+++
T Consensus 164 l~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~~~~l~~vl~~a~l~~~~Gls~~L 241 (601)
T PRK03659 164 LALVPLLAGSADEHFDWM-KIGMKVLAFAGMLIGGRYLLRPLFRFIAA-SGVREVFTAAALLLVLGSALFMDALGLSMAL 241 (601)
T ss_pred HHHHHHHhcCCCcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHHHHHHhCccHHH
Confidence 988766553 1 111111 11111111222223334444444333221 1246788888888999999999999999999
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044163 279 GAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISFK 358 (783)
Q Consensus 279 GaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~ 358 (783)
|||++|+++++. ++++++.++++++ .++|+|+||+++||++|+..+ . ..|..++.++++.+++|++++++.++++|
T Consensus 242 GAFlaGl~l~~s-~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l-~-~~~~~il~~~~~~l~~K~~~~~~~~~~~g 317 (601)
T PRK03659 242 GTFIAGVLLAES-EYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVL-Y-THLLWVLISVVVLVAVKGLVLYLLARLYG 317 (601)
T ss_pred HHHHHHHHhcCC-chHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHH-H-HhHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999996 7899999999998 799999999999999999887 3 23445566667778999999999999999
Q ss_pred CChHHHHHHHHHhhhhHHHHHHHHhhhcccCccchhhHHHHHHHHHHHHHhHHHHHHHhccc
Q 044163 359 ASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIFYKP 420 (783)
Q Consensus 359 ~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l~~~ 420 (783)
+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++++|+ +.+|++..++++
T Consensus 318 ~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~ls~-~~tP~l~~~~~~ 378 (601)
T PRK03659 318 LRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTLSM-MTTPLLMKLIDK 378 (601)
T ss_pred CCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHhHH
Confidence 9999999999999999999999999999999999999999988888855 556666666654
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-43 Score=390.18 Aligned_cols=358 Identities=21% Similarity=0.296 Sum_probs=307.5
Q ss_pred cccccccCchhHHHh--hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhh-HHH
Q 044163 44 DEKVVTSVLPVVMIQ--SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKK-TWN 120 (783)
Q Consensus 44 g~~~~~~~lP~l~~~--aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~-~~~ 120 (783)
+....|+++|.++|| +|+++||.+++.+. +.++.++.++++|++++||.+|+|+|++++|+++|+ +..
T Consensus 22 ~~l~~rl~lp~vlg~llaGiilGp~~~~~~~---------~~~~~i~~laelGvi~LlF~~GLE~~~~~l~~~~~~~~~~ 92 (397)
T COG0475 22 GPLFKRLGLPPVLGYLLAGIILGPWGLLLII---------ESSEIIELLAELGVVFLLFLIGLEFDLERLKKVGRSVGLG 92 (397)
T ss_pred HHHHHHcCCchHHHHHHHHHhcCcccccccC---------CchHHHHHHHHHhHHHHHHHHHHCcCHHHHHHhchhhhhh
Confidence 466789999999999 99999996555432 678999999999999999999999999999999999 888
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhccccccchhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHH
Q 044163 121 VSMTVLLVPLIISFLVAHM-LRDHVPRINLKRFYFYISFLASRSSFAVVVDAISELKLLNSELGQLTMSTAVIHEILGWL 199 (783)
Q Consensus 121 i~~~~~lip~~~g~~~~~~-l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~i 199 (783)
.+..++..|++++....+. ++.. +..++++|.+++.||+++++++++|+|.++++.|++++++++++|+.+++
T Consensus 93 ~~~~~~~~~~~l~~~~~~~~~g~~------~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~i~ 166 (397)
T COG0475 93 VAQVGLTAPFLLGLLLLLGILGLS------LIAALFLGAALALSSTAIVLKILMELGLLKTREGQLILGALVFDDIAAIL 166 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence 8888888998888655443 3333 47799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhc-Ch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhH
Q 044163 200 NSILSQLMRG-GL--QRILVVHVGAVCALSIFTIIVLRLMIEWIIRRTPERKPVKDVYIIAIMIGAITLGFIYEGLNSNY 276 (783)
Q Consensus 200 ll~v~~~~~~-~~--~~~~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~ 276 (783)
+++++..+.+ ++ ...++..+....+|.++..+.+|++.+++.|+..+. +.+|..+..++++++.+++++|.+|+|+
T Consensus 167 lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~~-~~~e~~~~~~l~i~l~~a~l~e~~gls~ 245 (397)
T COG0475 167 LLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAKT-ESSELFILFVLLLVLGAAYLAELLGLSM 245 (397)
T ss_pred HHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhChhH
Confidence 9999999873 22 122345555666677777776788888888886543 3468889999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044163 277 MIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLIS 356 (783)
Q Consensus 277 ~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~ 356 (783)
++|||++|+++++....+++++++++++.+++|+|+||+++||++|++.+ .. .+..++.++.+++++|.+++++.+|.
T Consensus 246 ilGAFlaGl~ls~~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l-~~-~~~~~l~~~~~~i~~K~~~~~~~~~~ 323 (397)
T COG0475 246 ILGAFLAGLLLSESEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVL-LE-NLLLILLLVALAILGKILGAYLAARL 323 (397)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHH-hc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998443379999999998779999999999999999998 33 34446777788889999999999999
Q ss_pred cCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccchhhHHHHHHHHHHHHHhHHHHHHHhccc
Q 044163 357 FKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIFYKP 420 (783)
Q Consensus 357 ~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l~~~ 420 (783)
.|++.+++...|+.+.++|++++++++.+.+ +.++++.+...+.+++++|.+.+.+.+.+++.
T Consensus 324 ~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~ 386 (397)
T COG0475 324 LGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLKR 386 (397)
T ss_pred HcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998877 67888999998888888888877777777653
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=1.6e-36 Score=353.22 Aligned_cols=362 Identities=13% Similarity=0.122 Sum_probs=295.6
Q ss_pred ccccccccccCchhHHHh--hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhH
Q 044163 41 ISLDEKVVTSVLPVVMIQ--SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKT 118 (783)
Q Consensus 41 i~~g~~~~~~~lP~l~~~--aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~ 118 (783)
.+.+....|+++|.+++| +|+++||+++|.++ | +..+..+.++++|++++||..|+|+|++.+|++++++
T Consensus 19 ~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~------~--~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~ 90 (562)
T PRK05326 19 ILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQ------F--DNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPA 90 (562)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcc------c--CcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHH
Confidence 344677789999999999 99999999999753 1 3457889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhhccHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHH
Q 044163 119 WNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSSFAVVVDAISELKL-LNSELGQLTMSTAVIHEILG 197 (783)
Q Consensus 119 ~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~el~l-l~s~~g~l~ls~aii~Di~~ 197 (783)
+.+++.++++|++++...++++.... |..++++|+++++||++++.++++|+|+ +++++++++.+++.+||.++
T Consensus 91 ~~la~~gv~~t~~~~g~~~~~l~g~~-----~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~~eS~~nD~~a 165 (562)
T PRK05326 91 LSLATLGVLITAGLTGLFAHWLLGLD-----WLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLEIESGSNDPMA 165 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-----HHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhhhhhhcccHHH
Confidence 99999999999988555554443332 6889999999999999999999999995 79999999999999999999
Q ss_pred HHHHHHHHHHh-cCh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q 044163 198 WLNSILSQLMR-GGL---QRILVVHVGAVCALSIFTIIVLRLMIEWIIRRTPERKPVKDVYIIAIMIGAITLGFIYEGLN 273 (783)
Q Consensus 198 ~ill~v~~~~~-~~~---~~~~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG 273 (783)
++++.++..+. ++. ....+..++..+++.++.+++.++++.|+.+|.... .++.+.++++++++++++++|.+|
T Consensus 166 i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~~--~~~~~~i~~l~~~l~~~~~a~~lg 243 (562)
T PRK05326 166 VFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIALP--AEGLYPILVLAGALLIFALTAALG 243 (562)
T ss_pred HHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhhHHHHHHHHHHHHHHHHHHHHC
Confidence 99888777655 221 122233444555666677788888899999887421 245678888999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 274 SNYMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILG 353 (783)
Q Consensus 274 ~~~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~ 353 (783)
.|+++|+|++|+++++.++..+...+++.+...+++.|+||+++|+.+|++.+ ....+...++.+++.+++|++++++.
T Consensus 244 ~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l-~~~~~~~l~i~~~l~~vaR~l~v~l~ 322 (562)
T PRK05326 244 GSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRL-LDIALPALLLALFLILVARPLAVFLS 322 (562)
T ss_pred CcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999997544444344444445789999999999999999887 32223223333456778999999999
Q ss_pred HHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccc-hhhHHHHHHHHHHHHHhHHHHHHHhcc
Q 044163 354 LISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVD-IQTFSELVLSNLVLTAIVTPLIAIFYK 419 (783)
Q Consensus 354 ~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~-~~~f~~lv~~~vl~t~i~~pl~~~l~~ 419 (783)
.+.+++++||++.+||. ++||+++++++.+++..|+.+ +..|+++++++++|+.+.++.++.+.|
T Consensus 323 ~~~~~~~~~e~~~i~~~-g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~ 388 (562)
T PRK05326 323 LLPFRFNLREKLFISWV-GLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAAR 388 (562)
T ss_pred HccCCCCHhhhheeeee-cchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHH
Confidence 99999999999999995 899999999999999999986 466788888889988888888877664
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=7.7e-38 Score=348.96 Aligned_cols=359 Identities=22% Similarity=0.326 Sum_probs=84.5
Q ss_pred ccccccccCchhHHHh--hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHH
Q 044163 43 LDEKVVTSVLPVVMIQ--SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWN 120 (783)
Q Consensus 43 ~g~~~~~~~lP~l~~~--aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~ 120 (783)
.|...+|+++|.+++| +|+++||.+++..+ +..+.++.++++|+.++||.+|+|+|.+.+||++++++.
T Consensus 11 ~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~---------~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~~~~~~ 81 (380)
T PF00999_consen 11 AGILFRRLGIPSIIGYILVGIVLGPSGLGLLE---------PDNPSFELLAEIGLAFLLFEAGLELDIKELRRNWRRALA 81 (380)
T ss_dssp ----------------------------------------------S-SSHHHHS--SSHHHHTTGGGG-----------
T ss_pred HHHHHHHhCCCHHHHHHHheeehhhhhhhhcc---------chhhHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 3446899999999999 99999999888542 114778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHHHh--hccccccchhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHH
Q 044163 121 VSMTVLLVPLII-SFLVAHML--RDHVPRINLKRFYFYISFLASRSSFAVVVDAISELKLLNSELGQLTMSTAVIHEILG 197 (783)
Q Consensus 121 i~~~~~lip~~~-g~~~~~~l--~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~ 197 (783)
+++.++++|+++ ++.+.+++ .+. .+..++++|.+++.||++++.++++|.+..+++.++++++++++||+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~ 156 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFLFILGL-----SWAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIA 156 (380)
T ss_dssp -------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTT
T ss_pred cccceeeehhhHHHHHHHHhhccchh-----hhHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccch
Confidence 999999999998 66666432 111 1578999999999999999999999989899999999999999999999
Q ss_pred HHHHHHHHHHh-cChh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q 044163 198 WLNSILSQLMR-GGLQ---RILVVHVGAVCALSIFTIIVLRLMIEWIIRRTPERKPVKDVYIIAIMIGAITLGFIYEGLN 273 (783)
Q Consensus 198 ~ill~v~~~~~-~~~~---~~~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG 273 (783)
++++.++.... .+.. ......++..+...++.+++.+++.+|+.|+. ++.++.+..+++++++..++++|.+|
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~a~~~g 233 (380)
T PF00999_consen 157 IILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRA---SPSSEIFILLVLALILLLYGLAEILG 233 (380)
T ss_dssp TTTT----------------------------------------------------------------------------
T ss_pred hhhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhc---cccchhhHHHHHHHHhhhcccccccc
Confidence 99988877765 1111 11111222222333333344444444444442 23457788899999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHH
Q 044163 274 SNYMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIE-SWRSFLALELILVSAYLGKVVGCIL 352 (783)
Q Consensus 274 ~~~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~-~~~~~~~~~~ii~~~~~~K~~~~~l 352 (783)
.++++|+|++|+++++. +.++++.++++++.+++|.|+||+.+|+++|++.+. +...+...+.+.+..+++|++++++
T Consensus 234 ~s~~l~af~~Gl~~~~~-~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~ 312 (380)
T PF00999_consen 234 LSGILGAFIAGLILSNS-PFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYL 312 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccceeeeeehccccc-cccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeeh
Confidence 99999999999999965 677789999999977999999999999999988872 2445555666666677899999999
Q ss_pred HHHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccchhhHHHHHHHHHHHHHhHHHHHHHhcc
Q 044163 353 GLISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIFYK 419 (783)
Q Consensus 353 ~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l~~ 419 (783)
.+++.|.++|++..+|+.+++||+++++++..+.+.|+++++.+++++.++++++.+.|+.++.+.+
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~~ 379 (380)
T PF00999_consen 313 ASRLFGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLLR 379 (380)
T ss_dssp ----------HHHHTTTTSS--HHHHHHHHHHHHH--------------------------------
T ss_pred hhhhcccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999988888888877653
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=2.3e-33 Score=298.52 Aligned_cols=262 Identities=22% Similarity=0.323 Sum_probs=225.3
Q ss_pred cccccccccCchhHHHh--hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHH
Q 044163 42 SLDEKVVTSVLPVVMIQ--SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTW 119 (783)
Q Consensus 42 ~~g~~~~~~~lP~l~~~--aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~ 119 (783)
+.+...+|+++|.+++| +|+++||+++|.++ ..+.++.++++|+.++||.+|+|+|++.+||++|+..
T Consensus 6 ~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~----------~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~ 75 (273)
T TIGR00932 6 LAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLIS----------NVEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAF 75 (273)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhCcccccCCC----------ChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34567789999999999 99999999999763 3467999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhhccccccchhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHH
Q 044163 120 NVSMTVLLVP-LIISFLVAHMLRDHVPRINLKRFYFYISFLASRSSFAVVVDAISELKLLNSELGQLTMSTAVIHEILGW 198 (783)
Q Consensus 120 ~i~~~~~lip-~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ 198 (783)
.+++.++++| +++++.++++++.. +..++++|++++.||++++.++++|+|+.+++.|+++++++++||++++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i 149 (273)
T TIGR00932 76 GVGVLQVLVPGVLLGLLLGHLLGLA------LGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVV 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC------HHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHH
Confidence 9999999999 67777677766543 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc-C--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchh
Q 044163 199 LNSILSQLMRG-G--LQRILVVHVGAVCALSIFTIIVLRLMIEWIIRRTPERKPVKDVYIIAIMIGAITLGFIYEGLNSN 275 (783)
Q Consensus 199 ill~v~~~~~~-~--~~~~~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~ 275 (783)
+++.+...... + +.....+.+...+++.++.+++.++..+|+.|+.++.++ +|.+...++.+++++++++|.+|.|
T Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~la~~~g~s 228 (273)
T TIGR00932 150 PLLALLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAELRP-SELFTAGSLLLMFGSAYFADLLGLS 228 (273)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99988877653 1 112233344444555556677888889999888765433 4778888999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccccc
Q 044163 276 YMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTD 322 (783)
Q Consensus 276 ~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~d 322 (783)
+++|||++|+++++. +.++++.++++++. ++|.|+||+++|+++|
T Consensus 229 ~~lgaf~aGl~~~~~-~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 229 MALGAFLAGVVLSES-EYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHHHHHHcCC-chHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 999999999999997 55788999999997 9999999999999987
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.6e-33 Score=281.39 Aligned_cols=357 Identities=19% Similarity=0.281 Sum_probs=296.4
Q ss_pred ccccccccccCchhHHHh--hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhH
Q 044163 41 ISLDEKVVTSVLPVVMIQ--SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKT 118 (783)
Q Consensus 41 i~~g~~~~~~~lP~l~~~--aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~ 118 (783)
+..|-...|.++|.++|| ||++.||.--|.. .+......++++|++++||-+|++++++.+...+..+
T Consensus 19 Fl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFv----------ad~~La~~LAelGViLLmFgvGLhfslkdLLavk~iA 88 (408)
T COG4651 19 FLLGALANRLRLSPLVGYLLAGVLAGPFTPGFV----------ADQTLAPELAELGVILLMFGVGLHFSLKDLLAVKAIA 88 (408)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcc----------cchhHHHHHHHhhHHHHHHhcchheeHHHHhhHHHHh
Confidence 345788899999999999 9999999877753 3455566999999999999999999999998877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHH
Q 044163 119 WNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSSFAVVVDAISELKLLNSELGQLTMSTAVIHEILGW 198 (783)
Q Consensus 119 ~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ 198 (783)
+--++.++.+....|...++.+++.+ ...+.+|.++|..|+.|..|.|+|.++.+++.||++++.-+++|+..+
T Consensus 89 ipgAl~qia~at~lg~gL~~~lgws~------~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mV 162 (408)
T COG4651 89 IPGALAQIALATLLGMGLSSLLGWSF------GTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMV 162 (408)
T ss_pred cchHHHHHHHHHHHHhHHHHHcCCCc------ccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHH
Confidence 66677888888888888888887764 567889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc--C--hh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHH-
Q 044163 199 LNSILSQLMRG--G--LQ------RILVVHVGAVCALSIFTIIVLRLMIEWIIRRTPERKPVKDVYIIAIMIGAITLGF- 267 (783)
Q Consensus 199 ill~v~~~~~~--~--~~------~~~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~l~~~~- 267 (783)
+.+....++++ + +. ....+.+++...|..++.+++|++.+|+..+.... ..+|.+...+++++++.++
T Consensus 163 l~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~t-GsrElf~L~vla~ALgVa~G 241 (408)
T COG4651 163 LALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAAT-GSRELFTLAVLAIALGVAFG 241 (408)
T ss_pred HHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CcHHHHHHHHHHHHHHHhhc
Confidence 88888877652 1 11 12334566888999999999999999999886321 2468888899999998776
Q ss_pred HHHHhchhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHH
Q 044163 268 IYEGLNSNYMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKV 347 (783)
Q Consensus 268 lae~lG~~~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~ 347 (783)
.++.+|+++.+|||++|+++++. ..+++..+..-++ ++.|.-+||+++||.+|+..+ ..+.+ .++....+...+|-
T Consensus 242 a~~LfgvsfaLGAffaGMvL~es-elshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l-~~~pl-~vlatllii~~gKs 317 (408)
T COG4651 242 AAELFGVSFALGAFFAGMVLAES-ELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMIL-IQQPL-AVLATLLIILFGKS 317 (408)
T ss_pred cceeeccchhHHHHHHHHHhcch-hhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHh-hcchH-HHHHHHHHHHhhhH
Confidence 56799999999999999999998 6777777777776 899999999999999999887 33334 34444555678999
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccchhhHHHHHHHHHHHHHhHHHHHHHhcc
Q 044163 348 VGCILGLISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIFYK 419 (783)
Q Consensus 348 ~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l~~ 419 (783)
+..+...+.+|.|.|.++.++..+.+.||++++++..|.+.+++++.- --++++.-+.+++..|+.....+
T Consensus 318 ~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~g-r~LvlagailsIl~nPllf~~~d 388 (408)
T COG4651 318 VAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAG-RDLVLAGAILSILLNPLLFALLD 388 (408)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHH-HHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999544 44455555556777777665544
No 11
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.93 E-value=8.7e-24 Score=243.92 Aligned_cols=331 Identities=12% Similarity=0.094 Sum_probs=239.9
Q ss_pred ccccCchhHHHh--hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHHHHHH
Q 044163 47 VVTSVLPVVMIQ--SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWNVSMT 124 (783)
Q Consensus 47 ~~~~~lP~l~~~--aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~~ 124 (783)
-.|+++|..+.+ +|+++||.++|.++... +.......++ ++++++++.+|.+|++++.+.+++.++..+.+.+.
T Consensus 33 keRl~Ls~~~v~Ll~GiilGP~~l~~idP~~---~g~~d~i~le-IteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~ 108 (810)
T TIGR00844 33 KEKLYIGESMVASIFGLIVGPHCLNWFNPLS---WGNTDSITLE-ISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVP 108 (810)
T ss_pred HhhcCCcHHHHHHHHHHHhhhhhhccCChhh---cccchHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHH
Confidence 346667666666 99999999998743110 0001233444 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhhccHHHHHHHHH---hccccCChhHHHHHHHHHHHHHHHHHHH
Q 044163 125 VLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSSFAVVVDAIS---ELKLLNSELGQLTMSTAVIHEILGWLNS 201 (783)
Q Consensus 125 ~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~---el~ll~s~~g~l~ls~aii~Di~~~ill 201 (783)
++.+.+++++++++++...++ |..++++|+++++|++.....+++ ..+ ++.++..++.+++.+||.++++++
T Consensus 109 ~M~lT~livAL~a~~Li~GL~----~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rLR~lL~~ESGlNDGlAfpfv 183 (810)
T TIGR00844 109 VMTSGWLVIALFVWILVPGLN----FPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHLRNLLSCESGCNDGLAFPFV 183 (810)
T ss_pred HHHHHHHHHHHHHHHHHcCCC----HHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHHHhHHhhhhhcccHHHHHHH
Confidence 999999988888887732221 689999999999999877777776 233 578899999999999999999877
Q ss_pred HHHHHHh--c--Ch-h------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHH
Q 044163 202 ILSQLMR--G--GL-Q------RILVVHVGAVCALSIFTIIVLRLMIEWIIRRTPERKPVKDVYIIAIMIGAITLGFIYE 270 (783)
Q Consensus 202 ~v~~~~~--~--~~-~------~~~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~l~~~~lae 270 (783)
.+.+.+. . +. . ...+|.++..++++++++++.++++.|+.+|... ..+.++.+.++++++++.+++
T Consensus 184 ~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i---~~esfla~~LaLAli~~gla~ 260 (810)
T TIGR00844 184 FLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNII---DRESFLAFYLILALTCAGFGS 260 (810)
T ss_pred HHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---chhHHHHHHHHHHHHHHHHHH
Confidence 6554433 1 11 1 1123334444444445555555555555444221 234566777888888999999
Q ss_pred HhchhHHHHHHHHHHhcCCCCCchhH-HHHHHHHHHHHHHHHHHHHHhcccccccccch----hhHHHHHHHHHHHHHHH
Q 044163 271 GLNSNYMIGAAMFGLVIPAGPPLGSA-LVEKSELIITHFFLPFFYIRLGQLTDIHSIES----WRSFLALELILVSAYLG 345 (783)
Q Consensus 271 ~lG~~~~lGaF~aGl~l~~~~~~~~~-l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~----~~~~~~~~~ii~~~~~~ 345 (783)
.+|.++++++|++|+++.+...+.++ -...+......++..++|+.+|+.+....+.. ...|..+++.+++.++.
T Consensus 261 lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~LifVr 340 (810)
T TIGR00844 261 MLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLVVIFLR 340 (810)
T ss_pred HhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999986432222 12224445567888899999999998765511 13455556666667788
Q ss_pred HHHHHHHHHHhc--CCChHHHHHHHHHhhhhHHHHHHHHhhhcccCc
Q 044163 346 KVVGCILGLISF--KASIRNALLFSCFLNIKGIIELMHFLRWRSRKY 390 (783)
Q Consensus 346 K~~~~~l~~~~~--~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gi 390 (783)
|+.++++...+. ..+++|++++|| ..+||..++.++.++++.+.
T Consensus 341 RPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 341 RIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 988888754443 368999999999 89999999999999877665
No 12
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.93 E-value=2.3e-23 Score=239.78 Aligned_cols=352 Identities=11% Similarity=0.095 Sum_probs=241.0
Q ss_pred cccccCchhHHHh--hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHHHHH
Q 044163 46 KVVTSVLPVVMIQ--SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWNVSM 123 (783)
Q Consensus 46 ~~~~~~lP~l~~~--aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~ 123 (783)
...|+++|..+++ +|+++||..++.. ++ -+.+ .+..+++..+||.+|+++|.+.++++++.++.+++
T Consensus 16 l~~r~~lP~~v~lil~Gi~lg~~~~~~~-------~~-~~~~---~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~ 84 (525)
T TIGR00831 16 TVKFIRLPYPIALILAGLLLGLAGLLPE-------VP-LDRE---IVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAF 84 (525)
T ss_pred HhcccCCCHHHHHHHHHHHHHhccccCC-------CC-CCHH---HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3578899999998 9999998644321 00 1112 33458999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHH
Q 044163 124 TVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSSFAVVVDAISELKLLNSELGQLTMSTAVIHEILGWLNSIL 203 (783)
Q Consensus 124 ~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill~v 203 (783)
.++++|++++..+.+++.... +..++++|+++++|+++++.+++++.+ .+++..+++.+++++||..+++++.+
T Consensus 85 ~~vlit~~~v~~~~~~~~~l~-----~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESllND~~alvlf~~ 158 (525)
T TIGR00831 85 LLVVVTTVVVGFSLNWILGIP-----LALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLLNDGAALVVFAI 158 (525)
T ss_pred HHHHHHHHHHHHHHHHHhccc-----HHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhhcchHHHHHHHH
Confidence 999999988776666543322 689999999999999999999999988 58899999999999999999999988
Q ss_pred HHHHh-c-C--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 044163 204 SQLMR-G-G--LQRILVVHVGAVCALSIFTIIVLRLMIEWIIRRTPERKPVKDVYIIAIMIGAITLGFIYEGLNSNYMIG 279 (783)
Q Consensus 204 ~~~~~-~-~--~~~~~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~~lG 279 (783)
...+. + + +.......++..++..+++++++..+..|+.|+..+. +.....+++++.+++++++|.+|.|++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~~---~~~~~~l~l~~~~~~y~lAe~lg~SgilA 235 (525)
T TIGR00831 159 AVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKIDD---PLVEIALTILAPFAGFLLAERFHFSGVIA 235 (525)
T ss_pred HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 87765 2 2 1122222333333334444555555666666553322 33467788888999999999999999999
Q ss_pred HHHHHHhcCCCCCc---hhHH---HHHHHHHHHHHHHHHHHHHhcccccccccchhh----H-----HHH---HHHHHHH
Q 044163 280 AAMFGLVIPAGPPL---GSAL---VEKSELIITHFFLPFFYIRLGQLTDIHSIESWR----S-----FLA---LELILVS 341 (783)
Q Consensus 280 aF~aGl~l~~~~~~---~~~l---~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~----~-----~~~---~~~ii~~ 341 (783)
+|++|+++++..+. ..+. .+.+-.....++.+++|+.+|+++.......+. . +.. .+++...
T Consensus 236 vv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 315 (525)
T TIGR00831 236 VVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVIYPV 315 (525)
T ss_pred HHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99999999986432 1111 122222346788999999999998742110000 0 100 1111122
Q ss_pred HHHHHHHHHHHH--HHh-----cCCChHHHHHHHHHhhhhHHHHHHHHhh-hcc--cC--c-----cchhhHHHHHHHHH
Q 044163 342 AYLGKVVGCILG--LIS-----FKASIRNALLFSCFLNIKGIIELMHFLR-WRS--RK--Y-----VDIQTFSELVLSNL 404 (783)
Q Consensus 342 ~~~~K~~~~~l~--~~~-----~~~~~~~~l~lg~~m~~rG~~~lii~~i-~~~--~g--i-----i~~~~f~~lv~~~v 404 (783)
....|++..+.. .++ .++++|+.+.++| ...||.++++++.. ... .| . +-.-+|.+++++.+
T Consensus 316 ~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~~~vVl~Tll 394 (525)
T TIGR00831 316 MTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELVFLAAGVILFSLL 394 (525)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHHHHHHHHHHHHHH
Confidence 233455433322 111 2478999999999 68999999998752 211 11 1 11234555666666
Q ss_pred HHHHhHHHHHHHhc
Q 044163 405 VLTAIVTPLIAIFY 418 (783)
Q Consensus 405 l~t~i~~pl~~~l~ 418 (783)
+.....||+++++-
T Consensus 395 vqG~tlp~l~r~l~ 408 (525)
T TIGR00831 395 VQGISLPIFVKRKF 408 (525)
T ss_pred HHHhhHHHHHHhcC
Confidence 66666778877754
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.88 E-value=4.5e-20 Score=206.91 Aligned_cols=357 Identities=14% Similarity=0.135 Sum_probs=260.6
Q ss_pred ccccccCchhHHHh--hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHHHH
Q 044163 45 EKVVTSVLPVVMIQ--SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWNVS 122 (783)
Q Consensus 45 ~~~~~~~lP~l~~~--aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~i~ 122 (783)
....|..+|.+... .|++.||.+++..+. +....-+.+-.+.+..++|..|+|+|.+.++|+++....++
T Consensus 23 ~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~--------~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~~~~~I~~La 94 (429)
T COG0025 23 VLAGRLLLPEIPLLLLLGLLGGPPGLNLISP--------DLELDPELFLVLFLAILLFAGGLELDLRELRRVWRSILVLA 94 (429)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhhhhhccccc--------cccCChHHHHHHHHHHHHHHhHhcCCHHHHHHhHHHHHHHH
Confidence 34456666655555 889999888877431 11112233338999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH
Q 044163 123 MTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSSFAVVVDAISELKLLNSELGQLTMSTAVIHEILGWLNSI 202 (783)
Q Consensus 123 ~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill~ 202 (783)
+.+++++.+......+++.+.. .+..++.+|+++++|++.++.+++++.+ .+.++.+++.+++++||..+++++.
T Consensus 95 ~~~v~it~~~~g~~~~~l~~~i----~~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gESl~ND~~giv~f~ 169 (429)
T COG0025 95 LPLVLITALGIGLLAHWLLPGI----PLAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEGESLLNDGVGIVLFK 169 (429)
T ss_pred HHHHHHHHHHHHHHHHHHhCCh----hHHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999887777777764322 2679999999999999999999999977 6889999999999999999999999
Q ss_pred HHHHHhc--Ch--hHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhch
Q 044163 203 LSQLMRG--GL--QRI----LVVHVGAVCALSIFTIIVLRLMIEWIIRRTPERKPVKDVYIIAIMIGAITLGFIYEGLNS 274 (783)
Q Consensus 203 v~~~~~~--~~--~~~----~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~ 274 (783)
+...... +. ... .++..+..++++++.+++.+++.+++.+|.. .+ ......+.+...+..+.++|.+|.
T Consensus 170 ~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~--~~-~~~~~~i~L~~~~~~~~~a~~l~~ 246 (429)
T COG0025 170 VALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGW--TS-PLLETLLTLLLAFAAYLLAEALGV 246 (429)
T ss_pred HHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--cc-hHHHHHHHHHHHHHHHHHHHHhCc
Confidence 8888762 22 111 2233334444555555566566665555421 11 345678899999999999999999
Q ss_pred hHHHHHHHHHHhcCC-----CCCch-hHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHH
Q 044163 275 NYMIGAAMFGLVIPA-----GPPLG-SALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVV 348 (783)
Q Consensus 275 ~~~lGaF~aGl~l~~-----~~~~~-~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~ 348 (783)
+++++.+++|+...+ ..+.. +...+.+-.....++.-+.|+..|++++...+ ....+...+++++..+++|++
T Consensus 247 SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~-~~~~~~~~l~~~~~~~v~R~~ 325 (429)
T COG0025 247 SGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLL-LALGLLGLLVALVAVLLARPL 325 (429)
T ss_pred chHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHhhHHHHHHHHHHHHHHHHH
Confidence 999999999997741 11211 22233344444677888999999999999877 333355567777778899999
Q ss_pred HHHHHHHhcC------CChHHHHHHHHHhhhhHHHHHHHHhhhcc-cC-----ccchhhHHHHHHHHHHHHHhHHHHHHH
Q 044163 349 GCILGLISFK------ASIRNALLFSCFLNIKGIIELMHFLRWRS-RK-----YVDIQTFSELVLSNLVLTAIVTPLIAI 416 (783)
Q Consensus 349 ~~~l~~~~~~------~~~~~~l~lg~~m~~rG~~~lii~~i~~~-~g-----ii~~~~f~~lv~~~vl~t~i~~pl~~~ 416 (783)
++++..+..+ .+++++++++| -++||.++++++..... .. .+-.-.+.+++.++++.++..+|+.++
T Consensus 326 ~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl~v~g~t~~~l~~~ 404 (429)
T COG0025 326 WVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILFSLLVQGLTLPPLAKK 404 (429)
T ss_pred HHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999988743 79999999999 69999999999876432 11 222234555556666666667777777
Q ss_pred hcc
Q 044163 417 FYK 419 (783)
Q Consensus 417 l~~ 419 (783)
+..
T Consensus 405 ~~~ 407 (429)
T COG0025 405 LEV 407 (429)
T ss_pred hcc
Confidence 553
No 14
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.1e-20 Score=199.60 Aligned_cols=353 Identities=13% Similarity=0.130 Sum_probs=285.1
Q ss_pred cccccccccccCchhHHHh--hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhh
Q 044163 40 GISLDEKVVTSVLPVVMIQ--SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKK 117 (783)
Q Consensus 40 Gi~~g~~~~~~~lP~l~~~--aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~ 117 (783)
++|...-..|++.|.++.. .|++.|--++|.++ | +..+.-..++++++++++|..|+..+++.+|...++
T Consensus 19 sif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~------f--dNy~~Ay~vg~lALaiILfdgG~~T~lss~r~a~~p 90 (574)
T COG3263 19 SIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIE------F--DNYPFAYMVGNLALAIILFDGGFGTQLSSFRVAAGP 90 (574)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccc------c--CccHHHHHHHHHHHHHHhhcCccCCcHHHHHHHhhh
Confidence 4555667789999999988 99999999999765 2 567888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHH
Q 044163 118 TWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSSFAVVVDAISELKLLNSELGQLTMSTAVIHEILG 197 (783)
Q Consensus 118 ~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~ 197 (783)
++.++..|++++-.+....++|+.+.. |.+++++|++...|+.+.+..+|.+.+ +|.+.+.+.--++--||-++
T Consensus 91 alsLATlGVl~Ts~Ltg~aA~~ll~l~-----wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~stLEiESGtNDPmA 164 (574)
T COG3263 91 ALSLATLGVLITSGLTGVAAAYLLNLD-----WLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVASTLEIESGSNDPMA 164 (574)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccH-----HHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhhEEeecCCCCcee
Confidence 999999999999887777776666543 799999999999999999999999988 58899999988999999999
Q ss_pred HHHHHHHHHHh-cC-h--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhc
Q 044163 198 WLNSILSQLMR-GG-L--QRILVVHVGAVCALSIFTIIVLRLMIEWIIRRTPERKPVKDVYIIAIMIGAITLGFIYEGLN 273 (783)
Q Consensus 198 ~ill~v~~~~~-~~-~--~~~~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG 273 (783)
+++...++.+. ++ + .+..+..++.-..+.++.++.+.++..|+++|..-. +..+..+++...+..+.+++.+|
T Consensus 165 vfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~nLd---~GL~pil~la~~Ll~fs~t~aiG 241 (574)
T COG3263 165 VFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRINLD---SGLYPILALAGGLLIFSLTGAIG 241 (574)
T ss_pred eehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHHHHHHhc
Confidence 88866555544 32 1 112222345566677788888889999999997321 45688899999999999999999
Q ss_pred hhHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 044163 274 SNYMIGAAMFGLVIPAGPP-LGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCIL 352 (783)
Q Consensus 274 ~~~~lGaF~aGl~l~~~~~-~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l 352 (783)
.|+++..+++|+++.|.+- .++.+.+..+.+ .++.--+-|...|+.+.++.+ ..-....+++.+.+.+++|.+++++
T Consensus 242 GsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql-~~iavPailL~l~mifvaRP~aV~l 319 (574)
T COG3263 242 GSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQL-LPIAIPAILLSLWMIFVARPLAVFL 319 (574)
T ss_pred CcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhh-hHhhHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999842 345677777777 677778889999999999887 3233444566667788999999999
Q ss_pred HHHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccchhh-HHHHHHHHHHHHHhHHH
Q 044163 353 GLISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDIQT-FSELVLSNLVLTAIVTP 412 (783)
Q Consensus 353 ~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~~~-f~~lv~~~vl~t~i~~p 412 (783)
...-++++++|.++++| -.-||.++++++...+-.|.-+.+. |++..+.++++-.+-+.
T Consensus 320 ~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG~ 379 (574)
T COG3263 320 GLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQGS 379 (574)
T ss_pred hhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHccC
Confidence 99999999999999999 6899999999999988777765543 45544444444444333
No 15
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.85 E-value=5.1e-19 Score=203.74 Aligned_cols=356 Identities=10% Similarity=0.059 Sum_probs=238.3
Q ss_pred ccCchhHHHhhheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHHHHHHHHHH
Q 044163 49 TSVLPVVMIQSGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWNVSMTVLLV 128 (783)
Q Consensus 49 ~~~lP~l~~~aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~li 128 (783)
+++.|.++...|+++|+...+.. .....-| + -+.+-.+.+-.++|.+|.++|.+.++++.+..+.+++.|+++
T Consensus 34 ~lP~s~llil~GlllG~i~~~~~-~~~~~~l---~---~~lf~~~~LPpIlFe~g~~l~~~~f~~n~~~Il~lAv~Gvli 106 (559)
T TIGR00840 34 AVPESVLLIVYGLLVGGIIKASP-HIDPPTL---D---SSYFFLYLLPPIVLDAGYFMPQRNFFENLGSILIFAVVGTLI 106 (559)
T ss_pred cCCHHHHHHHHHHHHHHHHHcCC-CCccCCc---C---HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444449999998543321 0000011 1 135555778899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccc-c--cchhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 129 PLIISFLVAHMLRDHVP-R--INLKRFYFYISFLASRSSFAVVVDAISELKLLNSELGQLTMSTAVIHEILGWLNSILSQ 205 (783)
Q Consensus 129 p~~~g~~~~~~l~~~~~-~--~~~~~~~l~lg~~ls~TS~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill~v~~ 205 (783)
+.++.....+++..... + .-.+..++++|+++|+|++..+.+++++.+ .+.++-.++.+++++||..+++++.++.
T Consensus 107 t~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESllNDavaIVLf~~~~ 185 (559)
T TIGR00840 107 NAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLLNDAVTVVLYNTFI 185 (559)
T ss_pred HHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhhhccHHHHHHHHHH
Confidence 88766555554322110 0 113689999999999999999999999999 5889999999999999999999998887
Q ss_pred HHhc--C-hh--HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHH
Q 044163 206 LMRG--G-LQ--RIL---VVHVGAVCALSIFTIIVLRLMIEWIIRRTPERKPVKDVYIIAIMIGAITLGFIYEGLNSNYM 277 (783)
Q Consensus 206 ~~~~--~-~~--~~~---~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~~ 277 (783)
.+.. + +. ... ...+....+..++++++...+..++.|+.... +.....+++++.++++.++|.+|.+++
T Consensus 186 ~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~~---~~~e~~l~l~~~yl~Y~lAE~l~~SGi 262 (559)
T TIGR00840 186 KFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHHI---RQIEPLFVFLISYLSYLFAETLHLSGI 262 (559)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---chhHHHHHHHHHHHHHHHHHHhccchH
Confidence 7652 1 11 111 11111111224445555666667777765432 234567788888999999999999999
Q ss_pred HHHHHHHHhcCCCC--Cchh---HHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 044163 278 IGAAMFGLVIPAGP--PLGS---ALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCIL 352 (783)
Q Consensus 278 lGaF~aGl~l~~~~--~~~~---~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l 352 (783)
++.+++|+++.+.. .... .-.+.+-.....+.-.+.|+.+|+++-...- .+ .|.++++.+++.+++|+++.+.
T Consensus 263 LAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~~-~~-~~~~i~~~l~~~ll~R~l~V~~ 340 (559)
T TIGR00840 263 LALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTENH-EW-NWAFVVATLSFCVIYRVLGVRT 340 (559)
T ss_pred HHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchh-hH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999996531 1111 1122233334667788999999997632211 22 2444444445566788888876
Q ss_pred HHHh------cCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccchhh-----HHHHHHHHHHHHHhHHHHHHHhc
Q 044163 353 GLIS------FKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDIQT-----FSELVLSNLVLTAIVTPLIAIFY 418 (783)
Q Consensus 353 ~~~~------~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~~~-----f~~lv~~~vl~t~i~~pl~~~l~ 418 (783)
.+.. .+.+++|.+.+++ ...||.++++++...-+.+.-..+. +.++++++++.....+|+++++.
T Consensus 341 ~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~TvlvqG~T~~pl~~~L~ 416 (559)
T TIGR00840 341 LSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIFQGGTIKPLVEVLK 416 (559)
T ss_pred HHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHHHHhhHHHHHHHhC
Confidence 5543 3579999999998 6889999999886543333222232 33334445555555688887764
No 16
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.74 E-value=4.9e-15 Score=162.11 Aligned_cols=297 Identities=12% Similarity=0.118 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHHHhhhcCChH-------HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHh
Q 044163 89 TLATMGGIYFVFIVTVKMDKA-------MILRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLAS 161 (783)
Q Consensus 89 ~la~iGl~~llF~~Gle~d~~-------~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls 161 (783)
-+.+.-..++.|.+|+|+..+ ..||..- ...-++.|+++|.++-.. +....+ ...--+ .+-+
T Consensus 65 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~l-P~~aAlGGm~vPaliy~~----~n~~~~-----~~~~GW-~Ip~ 133 (423)
T PRK14853 65 WAADGLLAIFFFVVGLELKREFVAGDLRDPSRAAL-PVAAALGGMIVPALIYVA----VNLAGG-----GALRGW-AIPT 133 (423)
T ss_pred HHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHH-HHHHHHHhHHHHHHHHHH----HhCCch-----hhhhhh-hhhh
Confidence 344445568889999999544 3333322 245678889999754322 322110 111222 2345
Q ss_pred hccHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 162 RSSFAVVVDAISELKL-LNSELGQLTMSTAVIHEILGWLNSILSQLMRGGLQRILVVHVGAVCALSIFTIIVLRLMIEWI 240 (783)
Q Consensus 162 ~TS~~Vv~~iL~el~l-l~s~~g~l~ls~aii~Di~~~ill~v~~~~~~~~~~~~~~~~~~~i~f~~~~~~v~r~~~~~l 240 (783)
.|+.+....+|..+|- .++.++..+++.|++||+.++++++++.+ ++ ....+.......+ ++. |+
T Consensus 134 ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfYt---~~-i~~~~L~~a~~~~--~~l--------~~ 199 (423)
T PRK14853 134 ATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFYT---SE-LNLEALLLALVPL--ALF--------WL 199 (423)
T ss_pred hhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhheccC---CC-CCHHHHHHHHHHH--HHH--------HH
Confidence 6899999999999875 48899999999999999999999888762 21 1122222221111 111 22
Q ss_pred HHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCC-----------CchhHHHHHHHHHHHHHH
Q 044163 241 IRRTPERKPVKDVYIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGP-----------PLGSALVEKSELIITHFF 309 (783)
Q Consensus 241 ~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~-----------~~~~~l~~kl~~~~~~~f 309 (783)
.+|.+ +++.+.++++ .+++.+..+..|+|+.+|+|++|+++|..+ +..+++++++++++..++
T Consensus 200 l~~~~----V~~~~~Y~il--g~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~I 273 (423)
T PRK14853 200 LVQKR----VRKWWLLLPL--GVATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVA 273 (423)
T ss_pred HHHcC----CchhhHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 22321 2334444444 346677899999999999999999999521 224678999999999999
Q ss_pred HHHH-HHHhcccccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHH
Q 044163 310 LPFF-YIRLGQLTDI-HSIESWRSFLALELILVSAYLGKVVGCILGLISF----------KASIRNALLFSCFLNIKGII 377 (783)
Q Consensus 310 ~PlF-Fv~~G~~~dl-~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~l~lg~~m~~rG~~ 377 (783)
+|+| |+..|.++|. ..+.+...-.....+++..++||.+|.+..++.. +++|++-..+|++-..-=.+
T Consensus 274 LPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~L~GIGFTm 353 (423)
T PRK14853 274 VPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVALLAGIGFTV 353 (423)
T ss_pred HHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999 9999999986 4330100111456677777899999988776543 57889998888865666678
Q ss_pred HHHHHhhhcc-cC-ccchhhHHHHHHHHHHHHHhHHHHHHHh
Q 044163 378 ELMHFLRWRS-RK-YVDIQTFSELVLSNLVLTAIVTPLIAIF 417 (783)
Q Consensus 378 ~lii~~i~~~-~g-ii~~~~f~~lv~~~vl~t~i~~pl~~~l 417 (783)
++-+++++++ .. .+++.-..+ .+.++++..+.-.+++..
T Consensus 354 SlFI~~LAf~~~~~~~~~aKigi-l~~S~~s~~~G~~~l~~~ 394 (423)
T PRK14853 354 SLLIGELAFGGGSARDDAVKVGV-LTGSLIAALLASVLLRLR 394 (423)
T ss_pred HHHHHHhhcCCChhhHHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence 8889999984 22 333333333 334444344444444443
No 17
>PRK11175 universal stress protein UspE; Provisional
Probab=99.63 E-value=1.2e-14 Score=157.24 Aligned_cols=272 Identities=10% Similarity=0.030 Sum_probs=167.1
Q ss_pred eeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccc--cccccchhHHHHHHHH-HHhhc
Q 044163 446 LRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQK--YKLASNATDRIMRAVI-KYSRS 522 (783)
Q Consensus 446 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~--~~~~~~~~~~i~~af~-~~~~~ 522 (783)
.|||+|++..+.....++.+..++... ..+++++|+++......+......... ........++.++.+. .+.
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 79 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLAQRN--GGKITAFLPIYDFSYEMTTLLSPDEREAMRQGVISQRTAWIREQAKPYL-- 79 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHHHhc--CCCEEEEEeccCchhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 479999999999999999988887653 356899998764322111100000000 0000011122222222 222
Q ss_pred CCCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEEecCCCCcccc
Q 044163 523 SGPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIFVDRGLNSCIN 602 (783)
Q Consensus 523 ~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIlVdRg~~~~~~ 602 (783)
..+++++..... ..+.+++|++.|+++++||||+|+|..+.+ .+..+|+..+++++++||+|.++-++ ..
T Consensus 80 -~~~~~~~~~v~~--~g~~~~~i~~~a~~~~~DLiV~G~~~~~~~--~~~~~gs~~~~l~~~~~~pvlvv~~~-~~---- 149 (305)
T PRK11175 80 -DAGIPIEIKVVW--HNRPFEAIIQEVIAGGHDLVVKMTHQHDKL--ESVIFTPTDWHLLRKCPCPVLMVKDQ-DW---- 149 (305)
T ss_pred -hcCCceEEEEec--CCCcHHHHHHHHHhcCCCEEEEeCCCCcHH--HhhccChhHHHHHhcCCCCEEEeccc-cc----
Confidence 234556554432 258899999999999999999999833222 34578889999999999998875332 11
Q ss_pred ccccCCcccEEEEeccCCccH-------HHHHHHHHHHhcCC-CeEEEEEEeeecCccc---------ccchhhhhH---
Q 044163 603 TAKSAKFCYNVAVFFIGGPDD-------REAMALVSRMSGHP-GVSITVFRINLEENIV---------ENESEKHID--- 662 (783)
Q Consensus 603 ~~~~~~~~~~I~v~f~GG~dd-------reAL~~a~rma~~~-~~~ltv~~~~~~~~~~---------~~~~~~~~d--- 662 (783)
...++|++++=+++.+ ..|+++|.++|+.. +++++++++.+..... .++.++...
T Consensus 150 -----~~~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (305)
T PRK11175 150 -----PEGGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPINIAIELPEFDPSVYNDAIRGQH 224 (305)
T ss_pred -----CCCCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchhccccccccchhhHHHHHHHHH
Confidence 1235899999876542 57999999999987 9999999997532110 011111111
Q ss_pred HHHHHHHHhhcCCCCCEEEEEEEecChHHHHHHHHhh--ccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhc
Q 044163 663 EVVMNEFVASNFGNASVVCRQIVANDTKQLVSAVRSL--ERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLAS 740 (783)
Q Consensus 663 ~~~l~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~--~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las 740 (783)
++.++++.+... .+.. +..+..|. ..+.|.+. +.+.||+|+|.++.+ |+. .--+|...+.++.
T Consensus 225 ~~~l~~~~~~~~--~~~~--~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~~~~------~~~----~~llGS~a~~v~~ 289 (305)
T PRK11175 225 LLAMKALRQKFG--IDEE--QTHVEEGL-PEEVIPDLAEHLDAELVILGTVGRT------GLS----AAFLGNTAEHVID 289 (305)
T ss_pred HHHHHHHHHHhC--CChh--heeeccCC-HHHHHHHHHHHhCCCEEEECCCccC------CCc----ceeecchHHHHHh
Confidence 234555544431 1111 12233332 22334333 257999999997543 222 2379999999999
Q ss_pred CCCCCCcccEEEEee
Q 044163 741 ADFVGGMMSILVIQS 755 (783)
Q Consensus 741 ~df~~~~~sVLVvqq 755 (783)
.++++||||+.
T Consensus 290 ----~~~~pVLvv~~ 300 (305)
T PRK11175 290 ----HLNCDLLAIKP 300 (305)
T ss_pred ----cCCCCEEEEcC
Confidence 68999999964
No 18
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.60 E-value=1.3e-13 Score=141.69 Aligned_cols=322 Identities=12% Similarity=0.119 Sum_probs=226.4
Q ss_pred hhHHHhhheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHH
Q 044163 53 PVVMIQSGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLII 132 (783)
Q Consensus 53 P~l~~~aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~ 132 (783)
|.+-+..|+++||+++++.+... . .+.+....-++.+-+..=.|.+++|+.-+.+.++++....+-+--.++-+++
T Consensus 41 a~va~itGlI~Gphvlnlfdp~~--w--gn~d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w~Si~vlllpVmi~gwlv 116 (467)
T KOG4505|consen 41 ATVAVITGLIFGPHVLNLFDPNS--W--GNKDYITYEISRVVLCVQVFAVAMELPRAYMLEHWRSIFVLLLPVMIIGWLV 116 (467)
T ss_pred hHHhhhhheeechhhhhhcCCcc--c--cCcchhhhhhhhhhHhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444499999999999843210 0 0223455567888889999999999999999999998776655444555556
Q ss_pred HHHHHHHhhccccccchhhHHHHHHHHHhhccHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 044163 133 SFLVAHMLRDHVPRINLKRFYFYISFLASRSSFAVVVDAISELKL---LNSELGQLTMSTAVIHEILGWLNSILSQLMR- 208 (783)
Q Consensus 133 g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~el~l---l~s~~g~l~ls~aii~Di~~~ill~v~~~~~- 208 (783)
.+.+.|.+.+... ...++.++..+++|+|.....+..+.+. .+.++..++.+++-.||.++++.+-+.+-+.
T Consensus 117 s~~fvy~l~p~ln----f~~Sl~iaaCiTaTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaipflflai~Ll~ 192 (467)
T KOG4505|consen 117 SFGFVYALIPNLN----FLTSLLIAACITATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDLLR 192 (467)
T ss_pred HHHHHHHHhcccc----HHHHHHHHHHccCCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHHHHh
Confidence 6666666654332 5788999999999997666667765444 3456777889999999999999887776654
Q ss_pred -cCh-----hH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHH
Q 044163 209 -GGL-----QR---ILVVHVGAVCALSIFTIIVLRLMIEWIIRRTPERKPVKDVYIIAIMIGAITLGFIYEGLNSNYMIG 279 (783)
Q Consensus 209 -~~~-----~~---~~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~~lG 279 (783)
.+. .+ ..+..-...++++.+++++.|..+++-.++.-- -.|+++.+-+++.+.++.+.+.+|.+-.+-
T Consensus 193 h~~~r~~~rdwv~~~iLyec~fg~llG~vIG~l~r~~lk~aekkrli---d~eSfl~~~vvl~lfc~gigtiiGvddLl~ 269 (467)
T KOG4505|consen 193 HKPRRKAGRDWVCDNILYECFFGCLLGCVIGYLSRQGLKFAEKKRLI---DRESFLIFYVVLALFCMGIGTIIGVDDLLV 269 (467)
T ss_pred cCchhccCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---cHHHHHHHHHHHHHHHhhhhheechhHHHH
Confidence 211 11 122222334455666777777777666555322 257889999999999999999999999999
Q ss_pred HHHHHHhcCCCCCchhHH-HHHHHHHHHHHHHHHHHHHhcccccccccc----hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 280 AAMFGLVIPAGPPLGSAL-VEKSELIITHFFLPFFYIRLGQLTDIHSIE----SWRSFLALELILVSAYLGKVVGCILGL 354 (783)
Q Consensus 280 aF~aGl~l~~~~~~~~~l-~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~----~~~~~~~~~~ii~~~~~~K~~~~~l~~ 354 (783)
.|.||.+++...-+..+. ..++..+...++.-.||++.|..++.+.++ ..+.|-.+++-+...+.-|+.++++.-
T Consensus 270 sFfAGi~Fswd~wFsk~t~~s~v~~viD~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi~iif~RRip~v~l~k 349 (467)
T KOG4505|consen 270 SFFAGIVFSWDEWFSKKTKESRVSEVIDLLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSITIIFIRRIPAVYLMK 349 (467)
T ss_pred HHHhhhhcchhHHhhhhhhhccHHHHHHHHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHHHHHHhcccceEEEec
Confidence 999999999875555443 345666667778888999999999987761 123455444444444455655555432
Q ss_pred Hhc--CCChHHHHHHHHHhhhhHHHHHHHHhhhc
Q 044163 355 ISF--KASIRNALLFSCFLNIKGIIELMHFLRWR 386 (783)
Q Consensus 355 ~~~--~~~~~~~l~lg~~m~~rG~~~lii~~i~~ 386 (783)
.+. =.+|||++++|. ..|.|.-++..+.++.
T Consensus 350 p~iPdikswkEALFvGh-FGPIGVgAly~allar 382 (467)
T KOG4505|consen 350 PLIPDIKSWKEALFVGH-FGPIGVGALYYALLAR 382 (467)
T ss_pred cCCcchhhHHHHHHhcc-CCCccHHHHHHHHHHH
Confidence 111 147999999998 7999998888877764
No 19
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.47 E-value=8.4e-12 Score=134.32 Aligned_cols=267 Identities=12% Similarity=0.106 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHH---Hhhhh---HHHHHHHHHHHHHHHHHHHHHHhhccccc-cchhhHHHHHHHHHh
Q 044163 89 TLATMGGIYFVFIVTVKMDKAMIL---RTVKK---TWNVSMTVLLVPLIISFLVAHMLRDHVPR-INLKRFYFYISFLAS 161 (783)
Q Consensus 89 ~la~iGl~~llF~~Gle~d~~~l~---~~~~~---~~~i~~~~~lip~~~g~~~~~~l~~~~~~-~~~~~~~l~lg~~ls 161 (783)
-+.+.=..++.|.+|+|+..+.+. ++.|+ +..-++.|+++|.++- ..+....+. ...| |+- .
T Consensus 55 wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy----~~~n~~~~~~~~GW------~IP-~ 123 (373)
T TIGR00773 55 WINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIY----LAFNANDPITREGW------AIP-A 123 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHH----hheecCCCcccCcc------ccc-c
Confidence 344445568889999999877764 23333 3455778888887532 222211100 0111 111 1
Q ss_pred hccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 162 RSSFAVVVDAISELK-LLNSELGQLTMSTAVIHEILGWLNSILSQLMRGGLQRILVVHVGAVCALSIFTIIVLRLMIEWI 240 (783)
Q Consensus 162 ~TS~~Vv~~iL~el~-ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~~~~~~~~~~~~~~~i~f~~~~~~v~r~~~~~l 240 (783)
.|+.+-..-++.=+| ..+..+....++-|++||+.+++++++..+ ++ ....+.......+.+ -++
T Consensus 124 ATDiAFalgvlallG~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt---~~-i~~~~L~~a~~~~~~----------l~~ 189 (373)
T TIGR00773 124 ATDIAFALGVMALLGKRVPLALKIFLLALAIIDDLGAIVIIALFYT---ND-LSMAALLVAAVAIAV----------LAV 189 (373)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhHhheeeecC---CC-CCHHHHHHHHHHHHH----------HHH
Confidence 123222222232222 246666788999999999999988877653 11 112233332222211 122
Q ss_pred HHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCch----hHHHHHHHHHHHHHHHHHH-HH
Q 044163 241 IRRTPERKPVKDVYIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPLG----SALVEKSELIITHFFLPFF-YI 315 (783)
Q Consensus 241 ~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~~----~~l~~kl~~~~~~~f~PlF-Fv 315 (783)
.+|.. +++...+..+. +++.+++ ...|+|+.+|+|++|+++|...+.. +++++.+.+.+..+++|+| |+
T Consensus 190 ~~~~~----v~~~~~y~~lg-vllW~~~-~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPlFAFa 263 (373)
T TIGR00773 190 LNRCG----VRRLGPYMLVG-VILWFAV-LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPLFAFA 263 (373)
T ss_pred HHHcC----CchhhHHHHHH-HHHHHHH-HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 23333333333 3333333 7999999999999999999864433 4566666777888999999 99
Q ss_pred HhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHHHHhhh
Q 044163 316 RLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISF----------KASIRNALLFSCFLNIKGIIELMHFLRW 385 (783)
Q Consensus 316 ~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~l~lg~~m~~rG~~~lii~~i~ 385 (783)
..|.++|...+ +.........+++..++||.+|++..++.. +++|++-.-+|++-..-=++++-+++++
T Consensus 264 nAGv~l~~~~~-~~~~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~L~GIGFTmSlfI~~LA 342 (373)
T TIGR00773 264 NAGVSLQGVSL-NGLTSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGVLCGIGFTMSIFIASLA 342 (373)
T ss_pred hcCeeeecCcc-hhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987555 322222356777778899999999876653 5788998888886555667888888888
Q ss_pred cc
Q 044163 386 RS 387 (783)
Q Consensus 386 ~~ 387 (783)
++
T Consensus 343 f~ 344 (373)
T TIGR00773 343 FG 344 (373)
T ss_pred cC
Confidence 84
No 20
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.40 E-value=7.1e-12 Score=139.58 Aligned_cols=319 Identities=11% Similarity=0.062 Sum_probs=204.9
Q ss_pred HHHHHHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHH-HHHHHHHHhhccccccchhhHHHHHHHHHhhccHHHHHHHH
Q 044163 94 GGIYFVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLI-ISFLVAHMLRDHVPRINLKRFYFYISFLASRSSFAVVVDAI 172 (783)
Q Consensus 94 Gl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~-~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL 172 (783)
-+--+.|..|.+++-+.+.|+......+++.|..+... +|.++.++........-.+..++++|+++|+|+|..+..++
T Consensus 105 LLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~f~d~L~fGaliSATDPVtvLaIf 184 (575)
T KOG1965|consen 105 LLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLSFKDCLAFGALISATDPVTVLAIF 184 (575)
T ss_pred hhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhcccccccccHHHHHHHhhHhcccCchHHHHHH
Confidence 34457899999999999999999999999988777644 45555444222111222378999999999999999999999
Q ss_pred HhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-hhH---HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 173 SELKLLNSELGQLTMSTAVIHEILGWLNSILSQLMRG-G-LQR---ILVVH----VGAVCALSIFTIIVLRLMIEWIIRR 243 (783)
Q Consensus 173 ~el~ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~~-~-~~~---~~~~~----~~~~i~f~~~~~~v~r~~~~~l~~r 243 (783)
+|++ ...++-.++-|++++||..+++++..+..... + +.+ ..+.. +....+.++.++++. ..+.|.
T Consensus 185 nel~-vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~Glis----A~~lK~ 259 (575)
T KOG1965|consen 185 NELG-VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLIS----ALVLKF 259 (575)
T ss_pred HHhC-CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 9999 57788999999999999999999998887762 2 111 12222 222222333333333 233333
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCC-----CchhHHHHHHHHHHHHHHHHHHHHHhc
Q 044163 244 TPERKPVKDVYIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGP-----PLGSALVEKSELIITHFFLPFFYIRLG 318 (783)
Q Consensus 244 ~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~-----~~~~~l~~kl~~~~~~~f~PlFFv~~G 318 (783)
+.-++ .+..+..+.+++.-..+++||.+|+++++..++.|+.+++.. +..+.-.+.+-.+...+.--+-|+++|
T Consensus 260 ~~l~~-~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~G 338 (575)
T KOG1965|consen 260 LYLRR-TPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLG 338 (575)
T ss_pred HHhcC-CcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22211 234567888888999999999999999999999999998852 222222222222334555566799999
Q ss_pred c-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CChHHHHHHHHHhhhhHHHHHHHHhhhc-
Q 044163 319 Q-LTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISFK----------ASIRNALLFSCFLNIKGIIELMHFLRWR- 386 (783)
Q Consensus 319 ~-~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~----------~~~~~~l~lg~~m~~rG~~~lii~~i~~- 386 (783)
+ -+|.... .+....++....++.+++|..-.+-.+.+.+ .+.++-..+.|.-.-||.++++++.--.
T Consensus 339 l~~f~~~k~-~~~~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~ 417 (575)
T KOG1965|consen 339 LSAFDFQKH-VYKSLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFT 417 (575)
T ss_pred HHHhcccce-eeechHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhcc
Confidence 5 3454444 2222223444445556677655443333332 3444555666654579999998875311
Q ss_pred cc-----CccchhhHHHHHHHHHHHHHhHHHHHHHhcc
Q 044163 387 SR-----KYVDIQTFSELVLSNLVLTAIVTPLIAIFYK 419 (783)
Q Consensus 387 ~~-----gii~~~~f~~lv~~~vl~t~i~~pl~~~l~~ 419 (783)
+. +.+-..+..++++++++....+.|+++++-.
T Consensus 418 ~~~~~~~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~ 455 (575)
T KOG1965|consen 418 DSPHTGGQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMI 455 (575)
T ss_pred ccccccccEEEEeeeeeeeeeeeeeCCccHHHHHHhcc
Confidence 11 2232333444455555556678899998753
No 21
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.28 E-value=3.9e-11 Score=112.50 Aligned_cols=131 Identities=18% Similarity=0.307 Sum_probs=99.6
Q ss_pred eEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHHHHhhcCCCC
Q 044163 447 RILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSRSSGPA 526 (783)
Q Consensus 447 rILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~ 526 (783)
|||+|++++++...+++.+..+++. .+..++++|+++.+....+ +.. .......++.++.+...... ..
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~--~~~~v~ll~v~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~--~g 69 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARA--QNGEIIPLNVIEVPNHSSP----SQL---EVNVQRARKLLRQAERIAAS--LG 69 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhc--CCCeEEEEEEEecCCCCCc----chh---HHHHHHHHHHHHHHHHHhhh--cC
Confidence 6999999999999999999999876 3568999999987644322 110 11123456666666666543 34
Q ss_pred eEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 527 VAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 527 v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
+.+++.+..+ .++.++||+.|+|+++|+||+|+|..+.. .+..+|++.++|++++||||.|+
T Consensus 70 ~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~--~~~~lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 70 VPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSL--RDRLFGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred CceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCc--cceecCchHHHHHhcCCCCEEEe
Confidence 5677777665 57999999999999999999999933322 35689999999999999998874
No 22
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.05 E-value=4.1e-08 Score=107.70 Aligned_cols=267 Identities=16% Similarity=0.143 Sum_probs=160.1
Q ss_pred HHHHHHHHHHHHHHhhhcCChHHHHH---hhhh---HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHh
Q 044163 88 NTLATMGGIYFVFIVTVKMDKAMILR---TVKK---TWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLAS 161 (783)
Q Consensus 88 ~~la~iGl~~llF~~Gle~d~~~l~~---~~~~---~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls 161 (783)
.-+.+.-..++.|.+|+|+.-+.+.. +.|+ +..-++.|+++|.++ ++.+....+. .--+|+- .
T Consensus 70 ~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlI----Y~~~n~~~~~------~~GWgIP-m 138 (438)
T PRK14856 70 NWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLI----YFFLNADTPS------QHGFGIP-M 138 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHH----HhheecCCCc------cCccccc-c
Confidence 34445555688999999998776642 2233 345577888888753 2222221110 1112221 1
Q ss_pred hccHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 162 RSSFAVVVDAISELKL-LNSELGQLTMSTAVIHEILGWLNSILSQLMRGGLQRILVVHVGAVCALSIFTIIVLRLMIEWI 240 (783)
Q Consensus 162 ~TS~~Vv~~iL~el~l-l~s~~g~l~ls~aii~Di~~~ill~v~~~~~~~~~~~~~~~~~~~i~f~~~~~~v~r~~~~~l 240 (783)
.|+.+-..-++.=+|- .++.+...+++-|++||+.+++++++..+ ++ ....+.++...++.+ . ++
T Consensus 139 ATDIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~-i~~~~L~~a~~~~~~--l--------~~ 204 (438)
T PRK14856 139 ATDIAFALGVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYT---TN-LKFAWLLGALGVVLV--L--------AV 204 (438)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CC-CcHHHHHHHHHHHHH--H--------HH
Confidence 2333333333333332 45567788999999999999988877653 11 123333333322221 1 12
Q ss_pred HHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCc---------------------------
Q 044163 241 IRRTPERKPVKDVYIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPL--------------------------- 293 (783)
Q Consensus 241 ~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~--------------------------- 293 (783)
.+|.. ++....++++. ++.-+....-|+|+.+...++|+++|..++.
T Consensus 205 ln~~~----v~~~~~Y~~~G--~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (438)
T PRK14856 205 LNRLN----VRSLIPYLLLG--VLLWFCVHQSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLTKEQ 278 (438)
T ss_pred HHHcC----CccccHHHHHH--HHHHHHHHHccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccccch
Confidence 23322 12223333333 3333445678999999999999999975322
Q ss_pred -----------------hhHHHHHHHHHHHHHHHHHH-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 294 -----------------GSALVEKSELIITHFFLPFF-YIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLI 355 (783)
Q Consensus 294 -----------------~~~l~~kl~~~~~~~f~PlF-Fv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 355 (783)
.+++++.+.+.+..+.+|+| |.-.|..++.... ... -.....+++..++||.+|.+..+.
T Consensus 279 ~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~-~~~-~pv~lGI~~GLvvGK~lGI~~~s~ 356 (438)
T PRK14856 279 QEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSIN-LEV-DKVLLGVILGLCLGKPLGIFLITF 356 (438)
T ss_pred hhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchh-hcc-CcHHHHHHHHHHhcchHHHHHHHH
Confidence 13466677788888999999 7888988875432 111 123445556667899998887765
Q ss_pred hc----------CCChHHHHHHHHHhhhhHHHHHHHHhhhcc
Q 044163 356 SF----------KASIRNALLFSCFLNIKGIIELMHFLRWRS 387 (783)
Q Consensus 356 ~~----------~~~~~~~l~lg~~m~~rG~~~lii~~i~~~ 387 (783)
.. |++|++-.-.|++-..-=.+++-+++++++
T Consensus 357 lavkl~~a~lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~ 398 (438)
T PRK14856 357 ISEKLKITARPKGISWWHILGAGLLAGIGFTMSMFISNLAFT 398 (438)
T ss_pred HHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 43 578899888888655566788888998884
No 23
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.99 E-value=1.8e-07 Score=101.32 Aligned_cols=268 Identities=15% Similarity=0.081 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHH---hhhh---HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhh
Q 044163 89 TLATMGGIYFVFIVTVKMDKAMILR---TVKK---TWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASR 162 (783)
Q Consensus 89 ~la~iGl~~llF~~Gle~d~~~l~~---~~~~---~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~ 162 (783)
-+.+.=..++.|.+|+|+.-+.+.. +.|+ ++.-++.|+++|.++-. .+....+. ..--+|+- ..
T Consensus 62 wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~----~~n~g~~~-----~~~GWgIP-mA 131 (389)
T PRK09560 62 WINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYA----AFNYNNPE-----TLRGWAIP-AA 131 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHh----eeecCCCc-----ccCccccc-cH
Confidence 3344445578899999998776642 2233 34557788888875422 22211100 00111111 12
Q ss_pred ccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 163 SSFAVVVDAISELK-LLNSELGQLTMSTAVIHEILGWLNSILSQLMRGGLQRILVVHVGAVCALSIFTIIVLRLMIEWII 241 (783)
Q Consensus 163 TS~~Vv~~iL~el~-ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~~~~~~~~~~~~~~~i~f~~~~~~v~r~~~~~l~ 241 (783)
|+.+-..-++.=+| ..+..+...+++-|++||+.+++++++..+ ++ ....+......++.+ . ++.
T Consensus 132 TDIAFAlgvL~llG~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt---~~-i~~~~L~~a~~~~~~--l--------~~l 197 (389)
T PRK09560 132 TDIAFALGVLALLGKRVPVSLKVFLLALAIIDDLGAIVIIALFYT---SD-LSLPALALAAIAIAV--L--------FLL 197 (389)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CC-CCHHHHHHHHHHHHH--H--------HHH
Confidence 33333333333222 145666788999999999999988877653 11 122233333222211 1 122
Q ss_pred HHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCc------hhHHHHHHHHHHHHHHHHHH-H
Q 044163 242 RRTPERKPVKDVYIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPL------GSALVEKSELIITHFFLPFF-Y 314 (783)
Q Consensus 242 ~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~------~~~l~~kl~~~~~~~f~PlF-F 314 (783)
+|.. ++....+..+. ++.-+....-|+|+.++..++|+.+|..++. .+++++++.+.+..+.+|+| |
T Consensus 198 n~~~----v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlFAl 271 (389)
T PRK09560 198 NRLG----VTKLTPYLIVG--AILWFAVLKSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLFAF 271 (389)
T ss_pred HHcC----CccchHHHHHH--HHHHHHHHHccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHHHh
Confidence 3322 12233344433 2333444578999999999999999985322 25688899999888889999 7
Q ss_pred HHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHHHHhh
Q 044163 315 IRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISF----------KASIRNALLFSCFLNIKGIIELMHFLR 384 (783)
Q Consensus 315 v~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~l~lg~~m~~rG~~~lii~~i 384 (783)
...|..++-..+ ....-.....+++..++||.+|.++.++.. |++|++-..+|++-..-=.+++-++++
T Consensus 272 aNAGV~l~~~~~-~~~~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~L 350 (389)
T PRK09560 272 ANAGVSLAGISL-SSLTSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSVLCGIGFTMSLFIGSL 350 (389)
T ss_pred hcCCeeecCCcH-HhccCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 788888743223 111111344555666789999888776543 578899888888666666788888898
Q ss_pred hcc
Q 044163 385 WRS 387 (783)
Q Consensus 385 ~~~ 387 (783)
++.
T Consensus 351 AF~ 353 (389)
T PRK09560 351 AFG 353 (389)
T ss_pred hcC
Confidence 883
No 24
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=98.97 E-value=1.7e-07 Score=101.23 Aligned_cols=268 Identities=12% Similarity=0.093 Sum_probs=157.8
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHH---hhhh---HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhh
Q 044163 89 TLATMGGIYFVFIVTVKMDKAMILR---TVKK---TWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASR 162 (783)
Q Consensus 89 ~la~iGl~~llF~~Gle~d~~~l~~---~~~~---~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~ 162 (783)
-+.+.=..++.|.+|+|+..+.+.. +.|+ +..-++.|+++|.++- ..+....+. ..--+|+- ..
T Consensus 62 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy----~~~n~~~~~-----~~~GWaIP-~A 131 (388)
T PRK09561 62 WINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIY----LLFNYADPV-----TREGWAIP-AA 131 (388)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHH----hheecCCCc-----ccCccccc-cH
Confidence 3344445578899999998877642 2333 3455778888887532 222221100 00011111 12
Q ss_pred ccHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 163 SSFAVVVDAISELK-LLNSELGQLTMSTAVIHEILGWLNSILSQLMRGGLQRILVVHVGAVCALSIFTIIVLRLMIEWII 241 (783)
Q Consensus 163 TS~~Vv~~iL~el~-ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~~~~~~~~~~~~~~~i~f~~~~~~v~r~~~~~l~ 241 (783)
|+.+-..-++.=+| ..+..+-...++-|++||+.+++++++..+ ++ ..+.+......++. +. ++.
T Consensus 132 TDIAFalgvlallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~-i~~~~L~~a~~~~~--~l--------~~l 197 (388)
T PRK09561 132 TDIAFALGVLALLGSRVPVALKIFLLALAIIDDLGAIVIIALFYT---SD-LSMVSLGVAAVAIA--VL--------AVL 197 (388)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecC---CC-ccHHHHHHHHHHHH--HH--------HHH
Confidence 33333333332222 245666788999999999999988877653 21 11223232222111 11 122
Q ss_pred HHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCc----hhHHHHHHHHHHHHHHHHHH-HHH
Q 044163 242 RRTPERKPVKDVYIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPL----GSALVEKSELIITHFFLPFF-YIR 316 (783)
Q Consensus 242 ~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~----~~~l~~kl~~~~~~~f~PlF-Fv~ 316 (783)
+|.. .+....+.++. ++.-+....-|+|+.++..+.|+.+|...+. .+++++++.+.+..+.+|+| |.-
T Consensus 198 n~~~----v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFAfaN 271 (388)
T PRK09561 198 NLCG----VRRTSVYILVG--VVLWVAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILPLFAFAN 271 (388)
T ss_pred HHcC----CccchHHHHHH--HHHHHHHHHccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHHHHHhhc
Confidence 3322 12223333433 2333445678999999999999999975322 35788999999888899999 777
Q ss_pred hcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHHHHhhhc
Q 044163 317 LGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISF----------KASIRNALLFSCFLNIKGIIELMHFLRWR 386 (783)
Q Consensus 317 ~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~l~lg~~m~~rG~~~lii~~i~~ 386 (783)
.|..++-..+ ....-.....+++..++||.+|.+..++.. +++|++-.-+|++-..-=.+++-++++++
T Consensus 272 AGV~l~~~~~-~~~~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF 350 (388)
T PRK09561 272 AGVSLQGVTL-DGLTSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGVLCGIGFTMSIFIASLAF 350 (388)
T ss_pred CCeeeccCcH-HhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 8877732112 111111334555566789999888776543 57889988888865556678888888888
Q ss_pred c
Q 044163 387 S 387 (783)
Q Consensus 387 ~ 387 (783)
+
T Consensus 351 ~ 351 (388)
T PRK09561 351 G 351 (388)
T ss_pred C
Confidence 5
No 25
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.93 E-value=4e-07 Score=98.05 Aligned_cols=268 Identities=14% Similarity=0.088 Sum_probs=155.6
Q ss_pred HHHHHHHHHHHHhhhcCChHHHH---Hhhhh---HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhhc
Q 044163 90 LATMGGIYFVFIVTVKMDKAMIL---RTVKK---TWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASRS 163 (783)
Q Consensus 90 la~iGl~~llF~~Gle~d~~~l~---~~~~~---~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~T 163 (783)
+.+.=..++.|.+|+|+..+.+. ++.|+ +..-++.|+++|.++-.. +......... +|+- ..|
T Consensus 60 iNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~----~n~~~~~~~G------W~IP-~AT 128 (383)
T PRK14854 60 INDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLS----INHDIKVING------WAIP-SAT 128 (383)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHh----hccCCcccCc------cccc-cHH
Confidence 33444457889999999877654 23333 345578888888754322 2211100011 1111 112
Q ss_pred cHHHHHHHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 164 SFAVVVDAISELK-LLNSELGQLTMSTAVIHEILGWLNSILSQLMRGGLQRILVVHVGAVCALSIFTIIVLRLMIEWIIR 242 (783)
Q Consensus 164 S~~Vv~~iL~el~-ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~~~~~~~~~~~~~~~i~f~~~~~~v~r~~~~~l~~ 242 (783)
+.+-..-++.=+| ..+..+--..++-|++||+.+++++++..+ ++ ..+.+.......+. ..++ +.|
T Consensus 129 DIAFAlgvLallG~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt---~~-i~~~~L~~A~~~~~--~l~~-------~nr 195 (383)
T PRK14854 129 DIAFTLGILALLGTRVPAKLKLLVITIAIFDDIAAIAIIAIFYT---KS-LSLLSLSLGTLFIL--AMII-------CNR 195 (383)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhhhHhheeeecC---CC-ccHHHHHHHHHHHH--HHHH-------HHH
Confidence 3222222232222 246666777888899999999988876653 21 11222222221111 1111 122
Q ss_pred HcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCc----hhHHHHHHHHHHHHHHHHHH-HHHh
Q 044163 243 RTPERKPVKDVYIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPL----GSALVEKSELIITHFFLPFF-YIRL 317 (783)
Q Consensus 243 r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~----~~~l~~kl~~~~~~~f~PlF-Fv~~ 317 (783)
+.. ++....+.++. ++.-+....-|+|+.++..+.|+++|...+. .+++++++.+.+..+.+|+| |...
T Consensus 196 ~~~----v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFA~aNA 269 (383)
T PRK14854 196 IFK----INRSSVYVVLG--FFAWFCTIKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPVFAFANA 269 (383)
T ss_pred hcC----CceehHHHHHH--HHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHHHhhcC
Confidence 111 12223333333 3334445678999999999999999974221 25688888999999999999 7788
Q ss_pred cccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHHHHhhhcc
Q 044163 318 GQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISF----------KASIRNALLFSCFLNIKGIIELMHFLRWRS 387 (783)
Q Consensus 318 G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~l~lg~~m~~rG~~~lii~~i~~~ 387 (783)
|..++-..+ ....-.....+++..++||.+|.+..++.. +++|++-...|++-..-=.+++-+++++++
T Consensus 270 GV~l~~~~~-~~~~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~L~GIGFTmSLFIa~LAF~ 348 (383)
T PRK14854 270 GISFSGISF-SILFEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISLLCGIGFTMSLFIGVLAFN 348 (383)
T ss_pred CeeeccCcH-HhhcCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 887732212 111112334555666789998888776542 578899988888656666788889998885
Q ss_pred c
Q 044163 388 R 388 (783)
Q Consensus 388 ~ 388 (783)
.
T Consensus 349 ~ 349 (383)
T PRK14854 349 D 349 (383)
T ss_pred C
Confidence 3
No 26
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=98.91 E-value=5.1e-07 Score=98.81 Aligned_cols=263 Identities=14% Similarity=0.098 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHH---hhhh---HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhhc
Q 044163 90 LATMGGIYFVFIVTVKMDKAMILR---TVKK---TWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASRS 163 (783)
Q Consensus 90 la~iGl~~llF~~Gle~d~~~l~~---~~~~---~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~T 163 (783)
+.+--..++.|.+|+|+.-+.+.. +.|+ +..-++.|+++|.++ +..+....+. .--+|+- ..|
T Consensus 67 INDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlI----y~~~n~~~~~------~~GWgIP-mAT 135 (423)
T PRK14855 67 VNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAAL----YTALNAGGPG------ASGWGVP-MAT 135 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHH----HheeecCCCc------cCccccc-cHH
Confidence 344445578899999998777642 2333 345577788888653 2222221110 1112221 223
Q ss_pred cHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 164 SFAVVVDAISELKL-LNSELGQLTMSTAVIHEILGWLNSILSQLMRGGLQRILVVHVGAVCALSIFTIIVLRLMIEWIIR 242 (783)
Q Consensus 164 S~~Vv~~iL~el~l-l~s~~g~l~ls~aii~Di~~~ill~v~~~~~~~~~~~~~~~~~~~i~f~~~~~~v~r~~~~~l~~ 242 (783)
+.+-..-+|.=+|- .+..+-..+++-|++||+.+++++++..+ ++. ...+..+...++.+ -++.+
T Consensus 136 DIAFAlgvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt---~~i-~~~~L~~a~~~~~~----------l~~ln 201 (423)
T PRK14855 136 DIAFALGVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYT---SGL-NLLALLLAALTWAL----------ALLAG 201 (423)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecC---CCC-CHHHHHHHHHHHHH----------HHHHH
Confidence 43333334433332 34567788999999999999988877653 211 12233332222211 11223
Q ss_pred HcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCC-Cc----------------------------
Q 044163 243 RTPERKPVKDVYIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGP-PL---------------------------- 293 (783)
Q Consensus 243 r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~-~~---------------------------- 293 (783)
|.. ++....++.+. ++.-+....-|+|+.++..+.|+++|..+ +.
T Consensus 202 ~~~----v~~~~~Y~~~G--~~lW~~~l~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (423)
T PRK14855 202 RLG----VTSLKIYAVLG--ALLWFFVLKSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRDLED 275 (423)
T ss_pred HcC----CccccHHHHHH--HHHHHHHHHhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHhhhh
Confidence 321 12223333333 23334456789999999999999999751 11
Q ss_pred --------hhHHHHHHHHHHHHHHHHHH-HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-------
Q 044163 294 --------GSALVEKSELIITHFFLPFF-YIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISF------- 357 (783)
Q Consensus 294 --------~~~l~~kl~~~~~~~f~PlF-Fv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~------- 357 (783)
.+++++.+.+.+..+.+|+| |...|..++-..+ .+ ....+++..++||.+|.+..++..
T Consensus 276 ~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~~-~p----v~lGI~~GLvvGK~lGI~~~s~lavkl~~a~ 350 (423)
T PRK14855 276 LLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGGL-GT----VSLGVFLGLLLGKPLGVVGGAWLAVRLGLAS 350 (423)
T ss_pred hccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCCC-Cc----HHHHHHHHHHhcchHHHHHHHHHHHHhCCCC
Confidence 13567778888888899999 7788888843333 32 234455556789998888776543
Q ss_pred ---CCChHHHHHHHHHhhhhHHHHHHHHhhhccc
Q 044163 358 ---KASIRNALLFSCFLNIKGIIELMHFLRWRSR 388 (783)
Q Consensus 358 ---~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~ 388 (783)
+++|++-.-.|++-..-=++++-+++++++.
T Consensus 351 lP~g~~w~~l~gv~~LaGIGFTmSLFIa~LAF~~ 384 (423)
T PRK14855 351 LPRRVNWLHMLGAGLLAGIGFTMSLFISNLAFAD 384 (423)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 5789999888886666667888889988843
No 27
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.83 E-value=3.6e-08 Score=94.41 Aligned_cols=139 Identities=12% Similarity=0.162 Sum_probs=89.9
Q ss_pred eEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccc--cccc-cccccchhHHHHHHHHHHhhcC
Q 044163 447 RILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPY--NTQK-YKLASNATDRIMRAVIKYSRSS 523 (783)
Q Consensus 447 rILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~--~~~~-~~~~~~~~~~i~~af~~~~~~~ 523 (783)
+||+|++..++....++.+..++... ...++++|+++.+... +..... .... ........++.++.+....+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~--~~~l~ll~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 75 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATK--GQTIVLVHVHPPITSI-PSSSGKLEVASAYKQEEDKEAKELLLPYRCFCS-- 75 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCC--CCcEEEEEeccCcccC-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 48999999999999999999887653 4679999998754221 100000 0000 00111223444444433222
Q ss_pred CCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchh-HHHHHHhccCC--CceEEEecC
Q 044163 524 GPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLH-NFNINILHYAP--CTVGIFVDR 595 (783)
Q Consensus 524 ~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~-~~~~~Vl~~Ap--CsVgIlVdR 595 (783)
...+.++...... .+.++.|++.|++.++|+||||-|..+.+ .+..++ ++.++|+++|| |||.| |.+
T Consensus 76 ~~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l--~~~~~gssva~~Vi~~a~~~c~Vlv-v~~ 145 (146)
T cd01989 76 RKGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHF--SMKFKKSDVASSVLKEAPDFCTVYV-VSK 145 (146)
T ss_pred hcCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCce--eecccCCchhHHHHhcCCCCceEEE-EeC
Confidence 2345566555433 47899999999999999999999932222 234566 69999999999 99877 444
No 28
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.81 E-value=2.7e-08 Score=92.49 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=89.6
Q ss_pred eEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHHHHhhcCCCC
Q 044163 447 RILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSRSSGPA 526 (783)
Q Consensus 447 rILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~ 526 (783)
|||+|++.++....+++.+..++... +..++++|+++-... . . ....++.++.+.+..+.. +
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~--~~~l~ll~v~~~~~~--~----~--------~~~~~~~l~~~~~~~~~~--~ 62 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRL--KAPWYVVYVETPRLN--R----L--------SEAERRRLAEALRLAEEL--G 62 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHh--CCCEEEEEEecCccc--c----C--------CHHHHHHHHHHHHHHHHc--C
Confidence 69999999999999999999988763 467999999763211 1 1 122345566555554422 2
Q ss_pred eEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccC-CCceEEE
Q 044163 527 VAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYA-PCTVGIF 592 (783)
Q Consensus 527 v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~A-pCsVgIl 592 (783)
+. ..+..+ .+..++|++.++|.++|+|++|+|..+.++ +..+|++.++|+++| ||+|.|.
T Consensus 63 ~~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~--~~~~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 63 AE--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWR--ELFRGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred CE--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHH--HHhcccHHHHHHHhCCCCeEEEe
Confidence 32 333333 678999999999999999999999555443 557899999999999 9998764
No 29
>PRK15456 universal stress protein UspG; Provisional
Probab=98.79 E-value=4.7e-08 Score=93.33 Aligned_cols=135 Identities=4% Similarity=0.009 Sum_probs=86.8
Q ss_pred eeEEEEeecC--CChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCccccc-ccccc-cccccchhHHHHHHHHHHhh
Q 044163 446 LRILCCIHHE--DNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLP-YNTQK-YKLASNATDRIMRAVIKYSR 521 (783)
Q Consensus 446 lrILv~v~~~--~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~-~~~~~-~~~~~~~~~~i~~af~~~~~ 521 (783)
-|||+|++.. ++....++.+..++.. . ..++++|+++..... ..... ..... ........++.++.+.....
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~--~-~~l~llhv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQD--D-GVIHLLHVLPGSASL-SLHRFAADVRRFEEHLQHEAEERLQTMVSHFT 78 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhc--C-CeEEEEEEecCcccc-cccccccchhhHHHHHHHHHHHHHHHHHHHhC
Confidence 4799999987 4788899998888754 2 379999998754211 10000 00000 00111122233333322111
Q ss_pred cCCCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 522 SSGPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 522 ~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
...+.+++.+.. .+..++|++.|++.++||||||.|..+ . .+..+|++.++|++++||||.|.
T Consensus 79 --~~~~~v~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~-~--~~~llGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 79 --IDPSRIKQHVRF---GSVRDEVNELAEELGADVVVIGSRNPS-I--STHLLGSNASSVIRHANLPVLVV 141 (142)
T ss_pred --CCCcceEEEEcC---CChHHHHHHHHhhcCCCEEEEcCCCCC-c--cceecCccHHHHHHcCCCCEEEe
Confidence 234566655543 588999999999999999999999322 2 35688999999999999998764
No 30
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.70 E-value=1.2e-07 Score=102.45 Aligned_cols=270 Identities=16% Similarity=0.148 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHH---hhhh---HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhh
Q 044163 89 TLATMGGIYFVFIVTVKMDKAMILR---TVKK---TWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASR 162 (783)
Q Consensus 89 ~la~iGl~~llF~~Gle~d~~~l~~---~~~~---~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~ 162 (783)
-+.+-=..++.|.+|+|+..+.+.. +.|+ +..-++.|+++|.++ +..+.... + ...--+|+ =..
T Consensus 58 wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalI----yl~~n~~~--~---~~~~GW~I-P~A 127 (378)
T PF06965_consen 58 WINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALI----YLAFNAGG--P---EAAHGWAI-PMA 127 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHH----HGGG--SS--T---THHHHTSS-SS-
T ss_pred HHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHH----HheeecCC--C---CcCceEEe-ccc
Confidence 3444555688899999998776642 2333 345567777777643 22222111 1 01111222 223
Q ss_pred ccHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 163 SSFAVVVDAISELKL-LNSELGQLTMSTAVIHEILGWLNSILSQLMRGGLQRILVVHVGAVCALSIFTIIVLRLMIEWII 241 (783)
Q Consensus 163 TS~~Vv~~iL~el~l-l~s~~g~l~ls~aii~Di~~~ill~v~~~~~~~~~~~~~~~~~~~i~f~~~~~~v~r~~~~~l~ 241 (783)
|+.+-..-++.=+|- .+..+....++-|++||+.+++++++..+ ++ ....+......++ ++ . +..
T Consensus 128 TDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt---~~-i~~~~L~~a~~~~-~~-l--------~~l 193 (378)
T PF06965_consen 128 TDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYT---DG-ISLLWLLLAAAAL-LL-L--------FVL 193 (378)
T ss_dssp --HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS---------HHHHHHHHHHH-HH-H--------HHH
T ss_pred ccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeC---CC-CCHHHHHHHHHHH-HH-H--------HHH
Confidence 555555555544442 34566788999999999999999887764 11 1122222222211 11 1 223
Q ss_pred HHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCch--------hHHHHHHHHHHHHHHHHHH
Q 044163 242 RRTPERKPVKDVYIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPLG--------SALVEKSELIITHFFLPFF 313 (783)
Q Consensus 242 ~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~~--------~~l~~kl~~~~~~~f~PlF 313 (783)
+|.. ++....+..+. ++.-+....-|+|+.++..+.|+.+|..++.+ +++++++++.+..+.+|+|
T Consensus 194 ~r~~----v~~~~~Y~~~G--~~lW~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlPlF 267 (378)
T PF06965_consen 194 NRLG----VRSLWPYLLLG--ILLWYAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILPLF 267 (378)
T ss_dssp HHTT-------THHHHHHH--HHHHHHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHHHH
T ss_pred HHCC----CceehHHHHHH--HHHHHHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHHhH
Confidence 3322 12223333332 23344456889999999999999999875442 4788889999888889999
Q ss_pred -HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHHHH
Q 044163 314 -YIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISF----------KASIRNALLFSCFLNIKGIIELMHF 382 (783)
Q Consensus 314 -Fv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~l~lg~~m~~rG~~~lii~ 382 (783)
|...|..++-..+ ....-.....+++..++||.+|.+..+... +++|++-...|++-..-=++++-++
T Consensus 268 AlaNAGV~l~~~~~-~~~~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~LaGIGFTmSLFIa 346 (378)
T PF06965_consen 268 ALANAGVSLSGSSL-GDLTSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGLLAGIGFTMSLFIA 346 (378)
T ss_dssp HHHHS----SSS----THHHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHHHTT--HHHHHHHH
T ss_pred hheeCceEEecCch-HhhhChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889988886655 211112234455556789999887765442 4677887777775555567888899
Q ss_pred hhhcccC
Q 044163 383 LRWRSRK 389 (783)
Q Consensus 383 ~i~~~~g 389 (783)
+.+++..
T Consensus 347 ~LAF~~~ 353 (378)
T PF06965_consen 347 GLAFDDP 353 (378)
T ss_dssp HHHSTT-
T ss_pred HHHcCCh
Confidence 9998863
No 31
>PRK15005 universal stress protein F; Provisional
Probab=98.69 E-value=1.6e-07 Score=89.55 Aligned_cols=138 Identities=14% Similarity=0.110 Sum_probs=85.6
Q ss_pred eeEEEEeecCCC--hHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHHHHhhcC
Q 044163 446 LRILCCIHHEDN--VNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSRSS 523 (783)
Q Consensus 446 lrILv~v~~~~~--~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 523 (783)
-|||+|++..++ ....++.+..++.. ....++++|+++.............. .........++..+.++++.+..
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~--~~~~l~ll~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~ 79 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKI--DDAEVHFLTVIPSLPYYASLGLAYSA-ELPAMDDLKAEAKSQLEEIIKKF 79 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhc--cCCeEEEEEEEccCcccccccccccc-cchHHHHHHHHHHHHHHHHHHHh
Confidence 369999999887 46788887777654 34579999999853221110000000 00000011122223333333221
Q ss_pred -CCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 524 -GPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 524 -~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
...++++..+. ..+..+.|++.|++.++|+||+|-|..| + .+..+|++..+|++++||+|.|.
T Consensus 80 ~~~~~~~~~~v~---~G~p~~~I~~~a~~~~~DLIV~Gs~~~~-~--~~~llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 80 KLPTDRVHVHVE---EGSPKDRILELAKKIPADMIIIASHRPD-I--TTYLLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred CCCCCceEEEEe---CCCHHHHHHHHHHHcCCCEEEEeCCCCC-c--hheeecchHHHHHHhCCCCEEEe
Confidence 12344555443 3688999999999999999999988322 2 35688999999999999998763
No 32
>PRK09982 universal stress protein UspD; Provisional
Probab=98.67 E-value=1.4e-07 Score=90.23 Aligned_cols=134 Identities=10% Similarity=0.050 Sum_probs=83.3
Q ss_pred eeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHHHHhhcCCC
Q 044163 446 LRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSRSSGP 525 (783)
Q Consensus 446 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 525 (783)
.|||+|++..++....++.+..++.. .+..++++|+++......+........ .......++.-+.++.+.+.. +
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~--~~a~l~llhV~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~-~ 78 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARH--NDAHLTLIHIDDGLSELYPGIYFPATE--DILQLLKNKSDNKLYKLTKNI-Q 78 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHH--hCCeEEEEEEccCcchhchhhhccchH--HHHHHHHHHHHHHHHHHHHhc-C
Confidence 47999999999999999998888754 456899999987432111100000000 000011111112233333221 1
Q ss_pred CeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 526 AVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 526 ~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
...++..+.. .+.++.|++.|++.++||||||-|..| + ++.++ +.++|+++|+|||.|+
T Consensus 79 ~~~~~~~v~~---G~p~~~I~~~A~~~~aDLIVmG~~~~~-~---~~~~~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 79 WPKTKLRIER---GEMPETLLEIMQKEQCDLLVCGHHHSF-I---NRLMP-AYRGMINKMSADLLIV 137 (142)
T ss_pred CCcceEEEEe---cCHHHHHHHHHHHcCCCEEEEeCChhH-H---HHHHH-HHHHHHhcCCCCEEEe
Confidence 2234434433 689999999999999999999966322 2 34554 8999999999998774
No 33
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.59 E-value=2.8e-07 Score=88.06 Aligned_cols=134 Identities=8% Similarity=0.050 Sum_probs=83.3
Q ss_pred eeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHHHHhhcCCC
Q 044163 446 LRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSRSSGP 525 (783)
Q Consensus 446 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 525 (783)
-|||+|++..++....++.+..++... ...++++|+........+....... ........++..+.++.+.+..
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~-- 77 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARPY--NAKVSLIHVDVNYSDLYTGLIDVNL--GDMQKRISEETHHALTELSTNA-- 77 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHhh--CCEEEEEEEccChhhhhhhhhhcch--HHHHHHHHHHHHHHHHHHHHhC--
Confidence 479999999999999999888887542 3579999984321111000000000 0001111223334444444322
Q ss_pred CeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 526 AVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 526 ~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
.+.+.... + ...+.++.|++.|++.++||||+|-| |... . .++++.++|+++|||+|.|.
T Consensus 78 ~~~~~~~~-~-~~G~p~~~I~~~a~~~~~DLIV~Gs~--~~~~--~-~lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 78 GYPITETL-S-GSGDLGQVLVDAIKKYDMDLVVCGHH--QDFW--S-KLMSSARQLINTVHVDMLIV 137 (144)
T ss_pred CCCceEEE-E-EecCHHHHHHHHHHHhCCCEEEEeCc--ccHH--H-HHHHHHHHHHhhCCCCEEEe
Confidence 33332222 1 23688999999999999999999998 3221 2 36899999999999998774
No 34
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.57 E-value=1.2e-07 Score=88.49 Aligned_cols=134 Identities=12% Similarity=0.123 Sum_probs=86.6
Q ss_pred eeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHH---HHhhc
Q 044163 446 LRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVI---KYSRS 522 (783)
Q Consensus 446 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~---~~~~~ 522 (783)
-|||+|+++.++...+++.+..++.. ....++++|+++........ .... .......+......+ .....
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~--~~~~i~~l~v~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 75 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKR--SGAEITLLHVIPPPPQYSFS----AAED-EESEEEAEEEEQARQAEAEEAEA 75 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHH--HTCEEEEEEEEESCHCHHHH----HHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHh--hCCeEEEEEeeccccccccc----cccc-cccccccchhhhhhhHHHHHHhh
Confidence 48999999999999999998888765 34689999999866433221 0000 000000000000000 11111
Q ss_pred CCCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 523 SGPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 523 ~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
.......... .+ .+..++|++.+++.++|+||+|.|..+.. .+..+|++.+++++++||+|.|+
T Consensus 76 -~~~~~~~~~~-~~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~--~~~~~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 76 -EGGIVIEVVI-ES--GDVADAIIEFAEEHNADLIVMGSRGRSGL--ERLLFGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp -HTTSEEEEEE-EE--SSHHHHHHHHHHHTTCSEEEEESSSTTST--TTSSSHHHHHHHHHHTSSEEEEE
T ss_pred -hccceeEEEE-Ee--eccchhhhhccccccceeEEEeccCCCCc--cCCCcCCHHHHHHHcCCCCEEEe
Confidence 1122223333 33 69999999999999999999999943333 34679999999999999998774
No 35
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.56 E-value=1.5e-05 Score=82.94 Aligned_cols=257 Identities=13% Similarity=0.139 Sum_probs=150.1
Q ss_pred HHHHHhhhcCChHHHHH---hhhh---HHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHHHHHHHHhhccHHHHH
Q 044163 97 YFVFIVTVKMDKAMILR---TVKK---TWNVSMTVLLVPLIISFLVAHMLRDHVP-RINLKRFYFYISFLASRSSFAVVV 169 (783)
Q Consensus 97 ~llF~~Gle~d~~~l~~---~~~~---~~~i~~~~~lip~~~g~~~~~~l~~~~~-~~~~~~~~l~lg~~ls~TS~~Vv~ 169 (783)
++.+.+|+|+..+.+.. +.++ ...-++.|++.|.++ +.++....+ ....| + +=+.|+.+-..
T Consensus 73 vFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli----y~~~n~~~p~~~~GW------a-IP~ATDiAFAl 141 (390)
T COG3004 73 VFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI----YLALNAGDPATLEGW------A-IPMATDIAFAL 141 (390)
T ss_pred HHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH----hheeecCChhhhcCc------C-cccHHHHHHHH
Confidence 56778999998887753 3333 234456667777542 222222211 00111 1 11224434333
Q ss_pred HHHHhcc-ccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 044163 170 DAISELK-LLNSELGQLTMSTAVIHEILGWLNSILSQLMRGGLQRILVVHVGAVCALSIFTIIVLRLMIEWIIRRTPERK 248 (783)
Q Consensus 170 ~iL~el~-ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~~~~~~~~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~ 248 (783)
-++.=+| ..++.+--..++-|++||+-+++++++...- + .+..+...+.++. ... . .++|+ .
T Consensus 142 GvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt~---~-Ls~~al~~a~~~i--~vL-~---~lN~~----~--- 204 (390)
T COG3004 142 GVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYTT---D-LSMAALGIAALAI--AVL-A---VLNRL----G--- 204 (390)
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhcC---C-ccHHHHHHHHHHH--HHH-H---HHHHh----C---
Confidence 3443333 2566777889999999999999888776531 1 1111222221111 111 1 12222 1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCch----hHHHHHHHHHHHHHHHHHH-HHHhccccc-
Q 044163 249 PVKDVYIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPLG----SALVEKSELIITHFFLPFF-YIRLGQLTD- 322 (783)
Q Consensus 249 ~~~e~~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~~----~~l~~kl~~~~~~~f~PlF-Fv~~G~~~d- 322 (783)
++..-.++++..++-.+. ..-|+|+.+...+.|+.+|-..+.+ +++++.+.+.+..+.+|+| |.-.|.+++
T Consensus 205 -v~~l~~Y~~~gviLW~~v--lkSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlPlFaFaNAGvsl~g 281 (390)
T COG3004 205 -VRRLSPYLLVGVILWIAV--LKSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILPLFAFANAGVSLQG 281 (390)
T ss_pred -chhhhHHHHHHHHHHHHH--HHhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHHHHHHccCCccccc
Confidence 111223344444333333 3679999999999999999653333 5677788888888899999 788888776
Q ss_pred --ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHHHHhhhccc
Q 044163 323 --IHSIESWRSFLALELILVSAYLGKVVGCILGLISF----------KASIRNALLFSCFLNIKGIIELMHFLRWRSR 388 (783)
Q Consensus 323 --l~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~ 388 (783)
+..+ . -.+.+.+++..++||.+|.+..++.. |.+|++-...+++-..-=.+++-+..++++.
T Consensus 282 ~~~~~l-~---s~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~iLcGIGFTMSlFI~~LAf~~ 355 (390)
T COG3004 282 VSLSGL-T---SPLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSILCGIGFTMSLFIASLAFGS 355 (390)
T ss_pred cccccc-c---cchHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHHHHhhhHHHHHHHHHHhcCC
Confidence 3333 1 12345566667789998888776542 5788888777775555556778888887765
No 36
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.49 E-value=1.8e-06 Score=80.63 Aligned_cols=126 Identities=14% Similarity=0.133 Sum_probs=82.0
Q ss_pred EEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccc---cchhhhhHHHHHHHHHhhcC-CCCCEEEEEEEec
Q 044163 612 NVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVE---NESEKHIDEVVMNEFVASNF-GNASVVCRQIVAN 687 (783)
Q Consensus 612 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~---~~~~~~~d~~~l~~~~~~~~-~~~~v~~~e~~v~ 687 (783)
||+||.-|.++.+.++++|.+||+.++++++++++.+...... .+.+.+..++.++....... ....+++. +..
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~ 78 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQLEVNVQRARKLLRQAERIAASLGVPVHTI--IRI 78 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchhHHHHHHHHHHHHHHHHHhhhcCCceEEE--EEe
Confidence 5899999999999999999999999999999999987532110 11112223344444444321 12233332 222
Q ss_pred ChHHHHHHHHhhc--cCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044163 688 DTKQLVSAVRSLE--RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVIQ 754 (783)
Q Consensus 688 ~~~e~~~~i~~~~--~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVvq 754 (783)
++ +..+.|.+.+ .+.||+++|++++.. .....+|...+.+.+ .++++|||++
T Consensus 79 ~~-~~~~~I~~~a~~~~~dlIV~G~~~~~~----------~~~~~lGs~~~~v~~----~~~~pvlvv~ 132 (132)
T cd01988 79 DH-DIASGILRTAKERQADLIIMGWHGSTS----------LRDRLFGGVIDQVLE----SAPCDVAVVK 132 (132)
T ss_pred cC-CHHHHHHHHHHhcCCCEEEEecCCCCC----------ccceecCchHHHHHh----cCCCCEEEeC
Confidence 22 2323333332 468999999997542 123479999999999 6899999985
No 37
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.43 E-value=1.8e-06 Score=79.67 Aligned_cols=129 Identities=15% Similarity=0.146 Sum_probs=90.2
Q ss_pred eEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHHHHhhcCCCC
Q 044163 447 RILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSRSSGPA 526 (783)
Q Consensus 447 rILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~~ 526 (783)
|||+|+.+++....+++.+..++... ...++++|+.+..+.... +. ........++.++.+..... ..+
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~--~~~i~~l~v~~~~~~~~~-----~~--~~~~~~~~~~~l~~~~~~~~--~~~ 69 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRL--GAELVLLHVVDPPPSSAA-----EL--AELLEEEARALLEALREALA--EAG 69 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCCCCcch-----hH--HHHHHHHHHHHHHHHHHHHh--cCC
Confidence 68999999999999999999998764 468999999765433221 00 00011233445555544332 234
Q ss_pred eEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEE
Q 044163 527 VAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGI 591 (783)
Q Consensus 527 v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgI 591 (783)
++++.....+ +..++|++.+++.++|++|+|++..+.. .+..+++..+++++++||+|.+
T Consensus 70 ~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~--~~~~~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 70 VKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGL--RRLLLGSVAERVLRHAPCPVLV 129 (130)
T ss_pred CceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCcc--ceeeeccHHHHHHhCCCCCEEe
Confidence 6666555443 3489999999999999999999854443 2357889999999999999865
No 38
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.40 E-value=2.5e-06 Score=79.64 Aligned_cols=129 Identities=16% Similarity=0.238 Sum_probs=80.2
Q ss_pred ccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccc--hhhhhHHHHHHHHH-------hhcCCCCCEE
Q 044163 610 CYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVENE--SEKHIDEVVMNEFV-------ASNFGNASVV 680 (783)
Q Consensus 610 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~--~~~~~d~~~l~~~~-------~~~~~~~~v~ 680 (783)
.+||++++-|.++.+.|+++|.++|++.+++++++++.++....... .+...+....+... ..........
T Consensus 2 ~~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (140)
T PF00582_consen 2 YKRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQYSFSAAEDEESEEEAEEEEQARQAEAEEAEAEGGIVI 81 (140)
T ss_dssp TSEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeeccccccccccccccccccccchhhhhhhHHHHHHhhhcccee
Confidence 36999999999999999999999999999999999999763221100 00000000000000 0000122333
Q ss_pred EEEEEecChH-HHHHHHHhhccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044163 681 CRQIVANDTK-QLVSAVRSLERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVIQ 754 (783)
Q Consensus 681 ~~e~~v~~~~-e~~~~i~~~~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVvq 754 (783)
+......+.. ++.+.++ ..++|++|+|+++... + +.--+|.+.+.++. .++++||||+
T Consensus 82 ~~~~~~~~~~~~i~~~~~--~~~~dliv~G~~~~~~------~----~~~~~gs~~~~l~~----~~~~pVlvv~ 140 (140)
T PF00582_consen 82 EVVIESGDVADAIIEFAE--EHNADLIVMGSRGRSG------L----ERLLFGSVAEKLLR----HAPCPVLVVP 140 (140)
T ss_dssp EEEEEESSHHHHHHHHHH--HTTCSEEEEESSSTTS------T----TTSSSHHHHHHHHH----HTSSEEEEEE
T ss_pred EEEEEeeccchhhhhccc--cccceeEEEeccCCCC------c----cCCCcCCHHHHHHH----cCCCCEEEeC
Confidence 3333333432 2323222 3679999999998432 1 12369999999999 6789999985
No 39
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.39 E-value=3.4e-06 Score=80.67 Aligned_cols=129 Identities=11% Similarity=0.149 Sum_probs=82.2
Q ss_pred EEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCccccc------------chhhhhHHHHHHHHHhhcCCCCCE
Q 044163 612 NVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVEN------------ESEKHIDEVVMNEFVASNFGNASV 679 (783)
Q Consensus 612 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~------------~~~~~~d~~~l~~~~~~~~~~~~v 679 (783)
+|++++=|.+..+.|+++|.++|+..+.++++++++++...... ++.++..++.++++.... ....+
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ 79 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSIPSSSGKLEVASAYKQEEDKEAKELLLPYRCFC-SRKGV 79 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHH-hhcCC
Confidence 47899999999999999999999999999999999864211100 011122234555555432 12234
Q ss_pred EEEEEEecChHHHHHHHHhhc--cCCcEEEEcccCCCCchhhhccCCCCCCCccc-hhhhhhhcCCCCCCc--ccEEEEe
Q 044163 680 VCRQIVANDTKQLVSAVRSLE--RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELG-IIGDLLASADFVGGM--MSILVIQ 754 (783)
Q Consensus 680 ~~~e~~v~~~~e~~~~i~~~~--~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG-~igd~Las~df~~~~--~sVLVvq 754 (783)
.+...++..+ +..+.|.+.+ .+.|++|+|+++.+ |+. +-.+| .+++.+.. .++ |+||||+
T Consensus 80 ~~~~~~~~g~-~~~~~I~~~a~~~~~dlIV~Gs~g~~------~l~----~~~~gssva~~Vi~----~a~~~c~Vlvv~ 144 (146)
T cd01989 80 QCEDVVLEDD-DVAKAIVEYVADHGITKLVMGASSDN------HFS----MKFKKSDVASSVLK----EAPDFCTVYVVS 144 (146)
T ss_pred eEEEEEEeCC-cHHHHHHHHHHHcCCCEEEEeccCCC------cee----ecccCCchhHHHHh----cCCCCceEEEEe
Confidence 4444444322 2222333322 45799999998643 222 22566 69999999 577 9999998
Q ss_pred ee
Q 044163 755 SV 756 (783)
Q Consensus 755 q~ 756 (783)
.+
T Consensus 145 ~~ 146 (146)
T cd01989 145 KG 146 (146)
T ss_pred Cc
Confidence 63
No 40
>PRK15005 universal stress protein F; Provisional
Probab=98.34 E-value=4.8e-06 Score=79.40 Aligned_cols=127 Identities=10% Similarity=0.087 Sum_probs=80.8
Q ss_pred ccEEEEeccCCcc--HHHHHHHHHHHhcCCCeEEEEEEeeecCcc---------ccc---chhhhhHHHHHHHHHhhcCC
Q 044163 610 CYNVAVFFIGGPD--DREAMALVSRMSGHPGVSITVFRINLEENI---------VEN---ESEKHIDEVVMNEFVASNFG 675 (783)
Q Consensus 610 ~~~I~v~f~GG~d--dreAL~~a~rma~~~~~~ltv~~~~~~~~~---------~~~---~~~~~~d~~~l~~~~~~~~~ 675 (783)
.++|++|+=|.++ .+.|+++|.++|+..++++++++++++... .+. +..++..++.++++.+...
T Consensus 2 ~~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 80 (144)
T PRK15005 2 NRTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFK- 80 (144)
T ss_pred CccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhC-
Confidence 3589999988777 478999999999999999999999864211 000 0111112244555555432
Q ss_pred CCCEEEEEEEecChHHHHHHHHhh--ccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEE
Q 044163 676 NASVVCRQIVANDTKQLVSAVRSL--ERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVI 753 (783)
Q Consensus 676 ~~~v~~~e~~v~~~~e~~~~i~~~--~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVv 753 (783)
...+.+... +..|.- .+.|.+. +.+.||+|+|++++ |+.+ .-+|...+.+.+ .++|+||||
T Consensus 81 ~~~~~~~~~-v~~G~p-~~~I~~~a~~~~~DLIV~Gs~~~-------~~~~----~llGS~a~~vl~----~a~cpVlvV 143 (144)
T PRK15005 81 LPTDRVHVH-VEEGSP-KDRILELAKKIPADMIIIASHRP-------DITT----YLLGSNAAAVVR----HAECSVLVV 143 (144)
T ss_pred CCCCceEEE-EeCCCH-HHHHHHHHHHcCCCEEEEeCCCC-------Cchh----eeecchHHHHHH----hCCCCEEEe
Confidence 222333222 334432 2333333 35799999997642 2222 268999999999 789999998
Q ss_pred e
Q 044163 754 Q 754 (783)
Q Consensus 754 q 754 (783)
+
T Consensus 144 r 144 (144)
T PRK15005 144 R 144 (144)
T ss_pred C
Confidence 5
No 41
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.34 E-value=1.5e-07 Score=104.95 Aligned_cols=314 Identities=12% Similarity=0.073 Sum_probs=196.4
Q ss_pred HHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc-c-cchhhHHHHHHHHHhhccHHHHHHHHHhc
Q 044163 98 FVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVP-R-INLKRFYFYISFLASRSSFAVVVDAISEL 175 (783)
Q Consensus 98 llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~-~-~~~~~~~l~lg~~ls~TS~~Vv~~iL~el 175 (783)
++|-+|.-|.-+.+..+..+.+..++.|.+.-.+.-.+.-|.+..... + .......++.|...|..+|..+..+.+|.
T Consensus 109 IvlDAGYfMp~r~Ff~NlgtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~glld~LlFgSLIsAVDPVAVLaVFEEi 188 (670)
T KOG1966|consen 109 IVLDAGYFMPNRAFFENLGTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIGLLDILLFGSLISAVDPVAVLAVFEEI 188 (670)
T ss_pred HHhcccccCccHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCchHHHHHHHHHHHHhcCchhhhhhhhhh
Confidence 678999999999999999999999999988754432222222211111 2 12246678889999999999999999999
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh--cC-hh--HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Q 044163 176 KLLNSELGQLTMSTAVIHEILGWLNSILSQLMR--GG-LQ--RI---LVVHVGAVCALSIFTIIVLRLMIEWIIRRTPER 247 (783)
Q Consensus 176 ~ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~--~~-~~--~~---~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~ 247 (783)
.. |.-+=-++-|++++||...+++.-+..++. ++ +. .. ....+....+.+++++.+...+.....|.+..
T Consensus 189 hV-Ne~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkft~~- 266 (670)
T KOG1966|consen 189 HV-NEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKFTKH- 266 (670)
T ss_pred cc-ccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHhhcc-
Confidence 84 767777889999999999999988777765 21 10 00 01111111112223333333344444444432
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCC--CchhHH---HHHHHHHHHHHHHHHHHHHhccccc
Q 044163 248 KPVKDVYIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGP--PLGSAL---VEKSELIITHFFLPFFYIRLGQLTD 322 (783)
Q Consensus 248 ~~~~e~~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~--~~~~~l---~~kl~~~~~~~f~PlFFv~~G~~~d 322 (783)
++-...++++.+...++..+|..+++++++--+.|+++...- ...++. .+..-...+..--++-|++.|.++-
T Consensus 267 --vrviePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fLGvs~v 344 (670)
T KOG1966|consen 267 --VRVLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFLGVSTV 344 (670)
T ss_pred --eeeecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheeehhhhc
Confidence 233456788888999999999999999999999999998641 112222 2222223345556777888887654
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccc----
Q 044163 323 IHSIESWRSFLALELILVSAYLGKVVGCILGLISF------KASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVD---- 392 (783)
Q Consensus 323 l~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~------~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~---- 392 (783)
-..- .|. |.++.+-++...+.|.+++...+++. +++..|.+.++.+ .-||.++..+..+--...+-.
T Consensus 345 ~~~h-~wd-~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsyG-GLRGAiaF~LV~lid~~~vp~K~~F 421 (670)
T KOG1966|consen 345 SSNH-HWD-FAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSYG-GLRGAIAFGLVVLIDGAKVPAKNMF 421 (670)
T ss_pred CCcc-eee-hhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeecC-CcchhhheeEEEEeccccCCcccce
Confidence 3221 232 34444444555667888876665554 4677788776653 568887766543322122222
Q ss_pred -hhhHHHHHHHHHHHHHhHHHHHHHhc
Q 044163 393 -IQTFSELVLSNLVLTAIVTPLIAIFY 418 (783)
Q Consensus 393 -~~~f~~lv~~~vl~t~i~~pl~~~l~ 418 (783)
..++.++.+++.+..+..-|+++++-
T Consensus 422 vttti~VIfFTVflQGiTIkplvk~L~ 448 (670)
T KOG1966|consen 422 VTTTIAVIFFTVFLQGITIKPLVKFLK 448 (670)
T ss_pred EeeeeEEEeeeeeecccchHHHHHHHc
Confidence 23344444556666667788888864
No 42
>PRK10116 universal stress protein UspC; Provisional
Probab=98.29 E-value=4.6e-06 Score=79.33 Aligned_cols=134 Identities=7% Similarity=0.027 Sum_probs=83.7
Q ss_pred eeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHHHHhhcCCC
Q 044163 446 LRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSRSSGP 525 (783)
Q Consensus 446 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 525 (783)
-|||++++..++....++.+..++... ...++++|+++........ ..... ........++..+.++.+.+. .
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~~~~~--~ 76 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPV--NGKISLITLASDPEMYNQF--AAPML-EDLRSVMQEETQSFLDKLIQD--A 76 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHHh--CCEEEEEEEccCcccchhh--hHHHH-HHHHHHHHHHHHHHHHHHHHh--c
Confidence 479999999999999999988887653 3578999998653211000 00000 000111122223334444432 2
Q ss_pred CeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 526 AVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 526 ~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
++....... ...+..+.|++.|++.++||||+|-|..+..+ .. .++..+|++++||+|.|+
T Consensus 77 ~~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~---~~-~s~a~~v~~~~~~pVLvv 137 (142)
T PRK10116 77 DYPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFS---RA-SCSAKRVIASSEVDVLLV 137 (142)
T ss_pred CCCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHH---HH-HHHHHHHHhcCCCCEEEE
Confidence 333322222 35788999999999999999999998322221 22 367899999999998875
No 43
>PRK09982 universal stress protein UspD; Provisional
Probab=98.29 E-value=5e-06 Score=79.42 Aligned_cols=124 Identities=10% Similarity=0.121 Sum_probs=78.7
Q ss_pred ccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcc---c----c-cchh---hhhHHHHHHHHHhhcCCCCC
Q 044163 610 CYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENI---V----E-NESE---KHIDEVVMNEFVASNFGNAS 678 (783)
Q Consensus 610 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~---~----~-~~~~---~~~d~~~l~~~~~~~~~~~~ 678 (783)
.++|++|.=|.++.+.|++.|.++|+.+++++++++++++... . . ++.+ ++..++.+++..... ....
T Consensus 3 ~k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 81 (142)
T PRK09982 3 YKHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSELYPGIYFPATEDILQLLKNKSDNKLYKLTKNI-QWPK 81 (142)
T ss_pred ceEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchhchhhhccchHHHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence 4689999999999999999999999999999999999864211 0 0 0111 111224455555443 1223
Q ss_pred EEEEEEEecChHHHHHHHHhh--ccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEEee
Q 044163 679 VVCRQIVANDTKQLVSAVRSL--ERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVIQS 755 (783)
Q Consensus 679 v~~~e~~v~~~~e~~~~i~~~--~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVvqq 755 (783)
+.+. +..|+ ..+.|.+. +.+.||+|+|++++ |+..| +| +.+.+.+ .++++||||+-
T Consensus 82 ~~~~---v~~G~-p~~~I~~~A~~~~aDLIVmG~~~~-------~~~~~-----~~-va~~V~~----~s~~pVLvv~~ 139 (142)
T PRK09982 82 TKLR---IERGE-MPETLLEIMQKEQCDLLVCGHHHS-------FINRL-----MP-AYRGMIN----KMSADLLIVPF 139 (142)
T ss_pred ceEE---EEecC-HHHHHHHHHHHcCCCEEEEeCChh-------HHHHH-----HH-HHHHHHh----cCCCCEEEecC
Confidence 3322 23332 22222222 35799999997532 22222 46 8999999 78999999964
No 44
>PRK11175 universal stress protein UspE; Provisional
Probab=98.26 E-value=5.2e-06 Score=89.84 Aligned_cols=145 Identities=10% Similarity=0.024 Sum_probs=86.9
Q ss_pred ceeEEEEeecCCCh-------HHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHH
Q 044163 445 ELRILCCIHHEDNV-------NGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVI 517 (783)
Q Consensus 445 elrILv~v~~~~~~-------~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~ 517 (783)
.-|||+|++..+.. ...++.+..++... ....++++|+.+............... ........++..+.++
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~-~~a~l~ll~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~ 229 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQL-NHAEVHLVNAYPVTPINIAIELPEFDP-SVYNDAIRGQHLLAMK 229 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhC-cCCceEEEEEecCcchhccccccccch-hhHHHHHHHHHHHHHH
Confidence 35899999976543 45778887776542 135799999987543211000000000 0000111122333444
Q ss_pred HHhhcCCCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEEecCCC
Q 044163 518 KYSRSSGPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIFVDRGL 597 (783)
Q Consensus 518 ~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIlVdRg~ 597 (783)
++.+.. +++....... ..+..+.|++.|+++++|+||||.|..+.+ .+..+|++.++|++++||+|.++-.+++
T Consensus 230 ~~~~~~--~~~~~~~~v~--~G~~~~~I~~~a~~~~~DLIVmG~~~~~~~--~~~llGS~a~~v~~~~~~pVLvv~~~~~ 303 (305)
T PRK11175 230 ALRQKF--GIDEEQTHVE--EGLPEEVIPDLAEHLDAELVILGTVGRTGL--SAAFLGNTAEHVIDHLNCDLLAIKPDGY 303 (305)
T ss_pred HHHHHh--CCChhheeec--cCCHHHHHHHHHHHhCCCEEEECCCccCCC--cceeecchHHHHHhcCCCCEEEEcCCCC
Confidence 444332 2322222222 257889999999999999999999833333 4678999999999999999888644443
No 45
>PRK15456 universal stress protein UspG; Provisional
Probab=98.08 E-value=3.6e-05 Score=73.31 Aligned_cols=126 Identities=13% Similarity=0.087 Sum_probs=78.8
Q ss_pred ccEEEEeccCCc--cHHHHHHHHHHHhcCCCeEEEEEEeeecCccc------c--cchh---hhhHHHHHHHHHhhcCCC
Q 044163 610 CYNVAVFFIGGP--DDREAMALVSRMSGHPGVSITVFRINLEENIV------E--NESE---KHIDEVVMNEFVASNFGN 676 (783)
Q Consensus 610 ~~~I~v~f~GG~--ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~------~--~~~~---~~~d~~~l~~~~~~~~~~ 676 (783)
.++|++|+=|.+ ....|+++|..+|+.. .+++++++.++.... . ++.+ ++..++.++++..+.. .
T Consensus 2 ~~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 79 (142)
T PRK15456 2 YKTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASLSLHRFAADVRRFEEHLQHEAEERLQTMVSHFT-I 79 (142)
T ss_pred CccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccccccccccchhhHHHHHHHHHHHHHHHHHHHhC-C
Confidence 368999998874 7899999999999875 589999998642110 0 0111 1222344555554431 1
Q ss_pred CCEEEEEEEecChHHHHHHHHhh--ccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044163 677 ASVVCRQIVANDTKQLVSAVRSL--ERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVIQ 754 (783)
Q Consensus 677 ~~v~~~e~~v~~~~e~~~~i~~~--~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVvq 754 (783)
..+.+. ..+..| +..+.|.+. +.+.||+|+|+++++ +. .--+|+..+.+.. .++|+||||+
T Consensus 80 ~~~~v~-~~v~~G-~~~~~I~~~a~~~~~DLIVmG~~g~~-------~~----~~llGS~a~~v~~----~a~~pVLvV~ 142 (142)
T PRK15456 80 DPSRIK-QHVRFG-SVRDEVNELAEELGADVVVIGSRNPS-------IS----THLLGSNASSVIR----HANLPVLVVR 142 (142)
T ss_pred CCcceE-EEEcCC-ChHHHHHHHHhhcCCCEEEEcCCCCC-------cc----ceecCccHHHHHH----cCCCCEEEeC
Confidence 223322 223333 223333333 257899999997532 11 2268999999999 7899999985
No 46
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.08 E-value=2e-05 Score=73.09 Aligned_cols=120 Identities=12% Similarity=0.138 Sum_probs=79.3
Q ss_pred EEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEEEEecChHH
Q 044163 612 NVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQIVANDTKQ 691 (783)
Q Consensus 612 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e 691 (783)
||++++-|.+..++++++|.++|++.+++++++++.+++..... ++ .++.++++++... ...+.+.. +.++ +
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~~~---~~-~~~~l~~~~~~~~-~~~~~~~~--~~~~-~ 72 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNRLS---EA-ERRRLAEALRLAE-ELGAEVVT--LPGD-D 72 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCccccCC---HH-HHHHHHHHHHHHH-HcCCEEEE--EeCC-c
Confidence 58999999999999999999999999999999999876432111 11 1244455544321 12233322 3232 2
Q ss_pred HHHHHHhh--ccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCC-cccEEEE
Q 044163 692 LVSAVRSL--ERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGG-MMSILVI 753 (783)
Q Consensus 692 ~~~~i~~~--~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~-~~sVLVv 753 (783)
..+.|.+. +.+.|++++|+++... + +.-.+|...+.+.. .+ ++.|||+
T Consensus 73 ~~~~I~~~~~~~~~dllviG~~~~~~------~----~~~~~Gs~~~~v~~----~a~~~~v~v~ 123 (124)
T cd01987 73 VAEAIVEFAREHNVTQIVVGKSRRSR------W----RELFRGSLVDRLLR----RAGNIDVHIV 123 (124)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCch------H----HHHhcccHHHHHHH----hCCCCeEEEe
Confidence 33333333 3568999999997532 1 12279999999999 55 8999987
No 47
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.05 E-value=1.9e-05 Score=75.36 Aligned_cols=125 Identities=13% Similarity=0.219 Sum_probs=78.2
Q ss_pred ccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCccc------c--cchhhhh---HHHHHHHHHhhcCCCCC
Q 044163 610 CYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIV------E--NESEKHI---DEVVMNEFVASNFGNAS 678 (783)
Q Consensus 610 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~------~--~~~~~~~---d~~~l~~~~~~~~~~~~ 678 (783)
.++|++|.=|.++.+.|+++|..+|+..+++++++++..+.... . ++.+++. -++.++++.... .
T Consensus 3 ~~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~ 78 (144)
T PRK15118 3 YKHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDLYTGLIDVNLGDMQKRISEETHHALTELSTNA----G 78 (144)
T ss_pred ceEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhhhhhhhhcchHHHHHHHHHHHHHHHHHHHHhC----C
Confidence 46899999999999999999999999999999999984321000 0 0011111 112333333322 1
Q ss_pred EEEEEEEecChHHHHHHHHhh-ccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEEee
Q 044163 679 VVCRQIVANDTKQLVSAVRSL-ERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVIQS 755 (783)
Q Consensus 679 v~~~e~~v~~~~e~~~~i~~~-~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVvqq 755 (783)
+...+..+..|.-...+++.. +.+.||+|+|++++. |. .+|...+.+.+ .++|+||||+.
T Consensus 79 ~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~~~----------~~---~lgSva~~v~~----~a~~pVLvv~~ 139 (144)
T PRK15118 79 YPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQDF----------WS---KLMSSARQLIN----TVHVDMLIVPL 139 (144)
T ss_pred CCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCcccH----------HH---HHHHHHHHHHh----hCCCCEEEecC
Confidence 222223333332222233332 357999999998421 11 27899999999 78999999986
No 48
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.03 E-value=7.3e-05 Score=68.77 Aligned_cols=124 Identities=14% Similarity=0.216 Sum_probs=80.6
Q ss_pred EEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccc---cchhhhhHHHHHHHHHhhc-CCCCCEEEEEEEec
Q 044163 612 NVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVE---NESEKHIDEVVMNEFVASN-FGNASVVCRQIVAN 687 (783)
Q Consensus 612 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~---~~~~~~~d~~~l~~~~~~~-~~~~~v~~~e~~v~ 687 (783)
+|++++-+++..+.++++|.+||+..+.+++++++.++..... .+.+....++.++++.... ..+.++.+ +...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~ 78 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELAELLEEEARALLEALREALAEAGVKVET--VVLE 78 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHHHHhcCCCceEE--EEec
Confidence 4789998889999999999999999999999999986532210 0111222346667776642 11233433 3332
Q ss_pred C--hHHHHHHHHhhccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEE
Q 044163 688 D--TKQLVSAVRSLERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVI 753 (783)
Q Consensus 688 ~--~~e~~~~i~~~~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVv 753 (783)
. ..++.+.++ +.++|++|+|+++... | ..--.|...+.|.+ .++++||++
T Consensus 79 ~~~~~~i~~~~~--~~~~dlvvig~~~~~~---------~-~~~~~~~~~~~ll~----~~~~pvliv 130 (130)
T cd00293 79 GDPAEAILEAAE--ELGADLIVMGSRGRSG---------L-RRLLLGSVAERVLR----HAPCPVLVV 130 (130)
T ss_pred CCCHHHHHHHHH--HcCCCEEEEcCCCCCc---------c-ceeeeccHHHHHHh----CCCCCEEeC
Confidence 2 233333333 3568999999986531 1 12368999999998 578888874
No 49
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.00 E-value=0.0011 Score=70.38 Aligned_cols=253 Identities=13% Similarity=0.087 Sum_probs=144.4
Q ss_pred HHHHHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhhccHHHHHHHHHh
Q 044163 95 GIYFVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSSFAVVVDAISE 174 (783)
Q Consensus 95 l~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~e 174 (783)
+..++|-.|-++|+|...+.-||...+-+.-++++.+++.+++.+++.... ...+.+.+-.+++.|.-+.=+.+..|
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~~g~~g~---~Gls~laiiaa~~~~Ng~ly~al~~~ 127 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKFFGAEGI---FGLSGLAIVAAMSNSNGGLYAALMGE 127 (312)
T ss_pred HHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHHcCcccc---cchHHHHHHHHHhcCcHHHHHHHHHH
Confidence 346889999999999988888888888788889999999988888874321 12445556666777777777888899
Q ss_pred ccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHH
Q 044163 175 LKLLNSELGQLTMSTAVIHEILGWLNSILSQLMRGGLQRILVVHVGAVCALSIFTIIVLRLMIEWIIRRTPERKPVKDVY 254 (783)
Q Consensus 175 l~ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~~~~~~~~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~~~~e~~ 254 (783)
+| -++|.|-..+ ..++|. + +...+.+.. .++ .+.| . ..
T Consensus 128 yG-~~~d~gA~~~--~sl~~G----------------P------f~tm~aLga----------~gL-A~ip----~--~~ 165 (312)
T PRK12460 128 FG-DERDVGAISI--LSLNDG----------------P------FFTMLALGA----------AGL-ANIP----I--MA 165 (312)
T ss_pred cC-CHhhhhHHhh--hhhccC----------------c------HHHHHHHHH----------HHH-hcCC----h--HH
Confidence 88 3555553211 112221 1 111111111 111 1111 0 00
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHH
Q 044163 255 IIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLA 334 (783)
Q Consensus 255 ~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~ 334 (783)
+ + +.+=|++.|+++.|..+ ++.+.+++ +..+.+|+|-+..|.++|++.+ -...+.
T Consensus 166 l---v----------------~lilpILiGmilGNld~---~~~~~l~~-Gi~f~I~f~~f~LG~~lnl~~I-~~~G~~- 220 (312)
T PRK12460 166 L---V----------------AALLPLVLGMILGNLDP---DMRKFLTK-GGPLLIPFFAFALGAGINLSML-LQAGLA- 220 (312)
T ss_pred H---H----------------HHHHHHHHHHHHhccch---hhHHHHhc-cceEeHHHHHHHhcCCeeHHHH-HHhChH-
Confidence 0 0 12335678888888632 34455554 3456899999999999999887 222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH--HHhhhhHHHHHHHHhhhcccCccchhhHHHHHHHHHHHHHhH-H
Q 044163 335 LELILVSAYLGKVVGCILGLISFKASIRNALLFS--CFLNIKGIIELMHFLRWRSRKYVDIQTFSELVLSNLVLTAIV-T 411 (783)
Q Consensus 335 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg--~~m~~rG~~~lii~~i~~~~gii~~~~f~~lv~~~vl~t~i~-~ 411 (783)
.+++.++.++.-...++...|++|.+.+-+..+| .+-+.=|...++.+.=.++. . .+.-++.+.++++.|.+. |
T Consensus 221 GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~~~~--~-~~~Ataqvaa~vivTail~P 297 (312)
T PRK12460 221 GILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPSLAP--V-AAAATAQVAASVIVTAILTP 297 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchhHHH--H-HHHHHHHHHHHHHHHHHHHH
Confidence 2222233334445556666688899988888777 54444444333332211111 1 133444444444445554 5
Q ss_pred HHHHHhccc
Q 044163 412 PLIAIFYKP 420 (783)
Q Consensus 412 pl~~~l~~~ 420 (783)
.+..+++|+
T Consensus 298 ~~t~~~~k~ 306 (312)
T PRK12460 298 LLTSWVAKK 306 (312)
T ss_pred HHHHHHHHH
Confidence 555565543
No 50
>PRK10116 universal stress protein UspC; Provisional
Probab=98.00 E-value=3.4e-05 Score=73.37 Aligned_cols=126 Identities=9% Similarity=0.138 Sum_probs=78.1
Q ss_pred ccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCccc----c---cchhhhh---HHHHHHHHHhhcCCCCCE
Q 044163 610 CYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIV----E---NESEKHI---DEVVMNEFVASNFGNASV 679 (783)
Q Consensus 610 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~----~---~~~~~~~---d~~~l~~~~~~~~~~~~v 679 (783)
.++|++++-+.++...|+++|.++|+..++++++++++++.... . ++.++.. -++.++++..+. .+
T Consensus 3 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~ 78 (142)
T PRK10116 3 YSNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMYNQFAAPMLEDLRSVMQEETQSFLDKLIQDA----DY 78 (142)
T ss_pred CceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhc----CC
Confidence 46899999998999999999999999999999999997532110 0 0111111 123344444332 12
Q ss_pred EEEEEEecChHHHHHHHHhh-ccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEEee
Q 044163 680 VCRQIVANDTKQLVSAVRSL-ERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVIQS 755 (783)
Q Consensus 680 ~~~e~~v~~~~e~~~~i~~~-~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVvqq 755 (783)
......+..|..-..+++.. +.++||+|+|.++.. ++. .++..++.+.+ .++++||||+-
T Consensus 79 ~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~~------~~~------~~~s~a~~v~~----~~~~pVLvv~~ 139 (142)
T PRK10116 79 PIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNHS------FFS------RASCSAKRVIA----SSEVDVLLVPL 139 (142)
T ss_pred CeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcch------HHH------HHHHHHHHHHh----cCCCCEEEEeC
Confidence 22222333443333333332 357999999998643 111 23467899999 78999999963
No 51
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.73 E-value=0.0032 Score=66.45 Aligned_cols=167 Identities=13% Similarity=0.142 Sum_probs=105.9
Q ss_pred HHHHHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc--ccchhhHHHHHHHHHhhccHHHHHHHH
Q 044163 95 GIYFVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVP--RINLKRFYFYISFLASRSSFAVVVDAI 172 (783)
Q Consensus 95 l~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~--~~~~~~~~l~lg~~ls~TS~~Vv~~iL 172 (783)
+..++|-.|-++|+|...+.-||...+-+.-+++..+++.+++.+++.... +.-...+.+.+-.+++.+..+.=..+.
T Consensus 51 ig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~ 130 (314)
T PF03812_consen 51 IGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALM 130 (314)
T ss_pred HHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHHHH
Confidence 456889999999999999999998888889999999999999888865410 000124556666677777788888888
Q ss_pred HhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCch
Q 044163 173 SELKLLNSELGQLTMSTAVIHEILGWLNSILSQLMRGGLQRILVVHVGAVCALSIFTIIVLRLMIEWIIRRTPERKPVKD 252 (783)
Q Consensus 173 ~el~ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~~~~~~~~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~~~~e 252 (783)
.|+|- ++|.|-. +...++|.= +...+++.+. .. . .-|+
T Consensus 131 ~~yGd-~~D~gA~--~i~sl~~GP----------------------f~tMl~LG~s-------------G~-a-~ip~-- 168 (314)
T PF03812_consen 131 GQYGD-EEDVGAF--SILSLNDGP----------------------FFTMLALGAS-------------GL-A-NIPW-- 168 (314)
T ss_pred HHhCC-HHHhHHH--HHHHhhhhH----------------------HHHHHHHhhc-------------cc-c-CCCH--
Confidence 88883 4444421 111111111 1111111100 00 0 0010
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 044163 253 VYIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSI 326 (783)
Q Consensus 253 ~~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l 326 (783)
..++ ..+=+++.|+++.|.. +++.+.+.+ +...++|+|-...|..+|+..+
T Consensus 169 ~~lv-------------------~~llP~iiG~iLGNLD---~~~r~fl~~-~~~~lIPF~~f~lGa~inl~~i 219 (314)
T PF03812_consen 169 MSLV-------------------AALLPIIIGMILGNLD---PDFRKFLAP-GVPILIPFFGFALGAGINLSNI 219 (314)
T ss_pred HHHH-------------------HHHHHHHHHHHHhcCC---HHHHHHHhc-CCCeeeehhhhhhcCCCCHHHH
Confidence 0001 1234778999999873 455555555 4688999999999999999887
No 52
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=97.41 E-value=0.0026 Score=60.47 Aligned_cols=138 Identities=14% Similarity=0.117 Sum_probs=86.3
Q ss_pred eeEEEEee-cCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCccccccccc-c---cccccchhHHHHHHHHHHh
Q 044163 446 LRILCCIH-HEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQ-K---YKLASNATDRIMRAVIKYS 520 (783)
Q Consensus 446 lrILv~v~-~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~-~---~~~~~~~~~~i~~af~~~~ 520 (783)
.+|+++++ ..+......+.+...+.... ..++++++++..+............ . ........++..+..+...
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKRLG--APLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHhcC--CeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 57999999 88888888888777766543 4566788776554322211100000 0 0011233455566555544
Q ss_pred hcCCCCeE-EEEEEEEcCCCCh-HHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 521 RSSGPAVA-VQPFIMISPYDTM-HQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 521 ~~~~~~v~-v~~~t~vs~~~~m-~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
+.. .+. ++....- .+. .+.|+..|.+.++|+|++|-+ |...-....+|++.++|++++||+|.++
T Consensus 84 ~~~--~~~~~~~~~~~---g~~~~~~i~~~a~~~~adliV~G~~--g~~~l~~~llGsvs~~v~~~~~~pVlvv 150 (154)
T COG0589 84 EAA--GVPVVETEVVE---GSPSAEEILELAEEEDADLIVVGSR--GRSGLSRLLLGSVAEKVLRHAPCPVLVV 150 (154)
T ss_pred HHc--CCCeeEEEEec---CCCcHHHHHHHHHHhCCCEEEECCC--CCccccceeeehhHHHHHhcCCCCEEEE
Confidence 422 222 2333332 355 699999999999999999997 2222223689999999999999998764
No 53
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.36 E-value=0.31 Score=54.29 Aligned_cols=288 Identities=16% Similarity=0.114 Sum_probs=146.4
Q ss_pred hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044163 59 SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLIISFLVAH 138 (783)
Q Consensus 59 aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~ 138 (783)
.|+++.. +|.++ ++...+..+.+.+..+=+-+++.=++.|+++++|.+++.+.. +..-.+..++|..+++
T Consensus 34 ~~~~lsn--lgli~-------~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~-F~~~~~g~viG~~va~ 103 (378)
T PF05684_consen 34 LGMLLSN--LGLID-------SPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLA-FLIGAVGTVIGAVVAF 103 (378)
T ss_pred HHHHHHH--CCCcC-------CCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHH
Confidence 6777655 45441 114566778888888877778877899999999998887643 3333445556666666
Q ss_pred Hhhccccccchhh-HHHHHHHHHhhc-cHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHH
Q 044163 139 MLRDHVPRINLKR-FYFYISFLASRS-SFAVVVDAISELKLLNSELGQLTMSTAVIHEILGWLNSILSQLMRGGLQRILV 216 (783)
Q Consensus 139 ~l~~~~~~~~~~~-~~l~lg~~ls~T-S~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~~~~~~~~~ 216 (783)
++.....+++.|. .+.+.|.-..-| .+.-+.. -++. + ..+.-.....|.++.-+.+.++..+..-
T Consensus 104 ~l~~~~l~~~~wk~ag~l~gsyiGGs~N~~Av~~---al~~---~-~~~~~a~~aaDnv~~~~~~~~l~~l~~~------ 170 (378)
T PF05684_consen 104 LLFGGFLGPEGWKIAGMLAGSYIGGSVNFVAVAE---ALGV---S-DSLFAAALAADNVVMALWFAFLLALPPF------ 170 (378)
T ss_pred HHHhhcccchHHHHHHHHHhcccCchhHHHHHHH---HHCC---C-HHHHHHHHHHHHHHHHHHHHHHHHHhhh------
Confidence 6654332222232 222222211111 1222222 2332 1 2233333334444444444443332210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------------HHH--cCCCCCCchHHHHHHHHHHHHHHHHHHHhchh-----
Q 044163 217 VHVGAVCALSIFTIIVLRLMIEWI--------------IRR--TPERKPVKDVYIIAIMIGAITLGFIYEGLNSN----- 275 (783)
Q Consensus 217 ~~~~~~i~f~~~~~~v~r~~~~~l--------------~~r--~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~----- 275 (783)
.++.-+|. .+. .++.++.. ..+...+.+.+....+++.++-.
T Consensus 171 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~la~a~~v~~~s~~la~~l~~~~ 233 (378)
T PF05684_consen 171 ----------------ARKFDRWTKADTSSIEALEEEIEAEEAEWARKPIS-QDLAFLLAVAFAVVALSHALAAWLPPLF 233 (378)
T ss_pred ----------------hHHhhhccCCCccccchhhhhhhhhhhccccCCcH-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 000 00011111 22344444444444433332221
Q ss_pred --------HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHH
Q 044163 276 --------YMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKV 347 (783)
Q Consensus 276 --------~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~ 347 (783)
.++-....|++.... |..+.+ .--+.+ ..+++=+||+.+|++.|+..+.+ ..+ .+++.++.+....
T Consensus 234 ~~~~~~~~~il~~tt~~l~~~~~-~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~~-ap~--~~l~~~i~l~iH~ 307 (378)
T PF05684_consen 234 AGISSSTWLILTVTTLGLATSFP-PFRKLL-RGASEL-GTFLLYLFFAVIGASADISELLD-APS--LFLFGFIILAIHL 307 (378)
T ss_pred hhccccHHHHHHHHHHHHHHhcc-chhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHHH-hHH--HHHHHHHHHHHHH
Confidence 334445566665543 444443 333444 56778889999999999998722 222 3334445566788
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccch
Q 044163 348 VGCILGLISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDI 393 (783)
Q Consensus 348 ~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~ 393 (783)
+..++.+|++|.|..+... +..=|.-|..+......++...+..+
T Consensus 308 ~l~l~~~kl~k~~l~~~~v-AS~AnIGGpaTA~a~A~a~~~~Lv~p 352 (378)
T PF05684_consen 308 LLMLILGKLFKIDLFELLV-ASNANIGGPATAPAVAAAKGPSLVPP 352 (378)
T ss_pred HHHHHHHHHHCCCHHHHHH-HhhcccCCcchHHHHHHhcCCccHHH
Confidence 8888999999999876654 44345555555554444554444433
No 54
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=97.20 E-value=0.013 Score=61.48 Aligned_cols=167 Identities=10% Similarity=0.113 Sum_probs=100.9
Q ss_pred HHHHHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhcccc--ccchhhHHHHHHHHHhhccHHHHHHHH
Q 044163 95 GIYFVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVP--RINLKRFYFYISFLASRSSFAVVVDAI 172 (783)
Q Consensus 95 l~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~--~~~~~~~~l~lg~~ls~TS~~Vv~~iL 172 (783)
+..++|-.|-++|+|...+.-+|...+-+.-++++.+++.+++.+++.... +.-...+.+.+-.+++.|.-+.=+.+.
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~ 130 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIM 130 (314)
T ss_pred HHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHH
Confidence 346889999999999988887887777778888899999988888874320 000123445555566666667777777
Q ss_pred HhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCch
Q 044163 173 SELKLLNSELGQLTMSTAVIHEILGWLNSILSQLMRGGLQRILVVHVGAVCALSIFTIIVLRLMIEWIIRRTPERKPVKD 252 (783)
Q Consensus 173 ~el~ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~~~~~~~~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~~~~~~~~e 252 (783)
.|+| -++|.|-..+ ..++|. + +...+.+.. .|. .+
T Consensus 131 ~qyG-d~~D~gA~~i--~sl~~G----------------P------f~TMi~LG~------------------sGl--A~ 165 (314)
T TIGR00793 131 QQYG-TKEEAGAFVL--MSLESG----------------P------LMTMVILGT------------------AGI--AS 165 (314)
T ss_pred HHcC-CHhhhhhhhh--hhhccC----------------c------HHHHHHHhh------------------ccC--CC
Confidence 8887 3445442111 111111 1 111111110 000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccccccccc
Q 044163 253 VYIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSI 326 (783)
Q Consensus 253 ~~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l 326 (783)
..+... -..+=+++.|+++.|-. +++.+.+.+ ....++|+|-...|..+|++.+
T Consensus 166 ip~~~l----------------v~~ilPlliG~ilGNLD---~~~r~fl~~-~~~~lIpFf~FaLGaginl~~i 219 (314)
T TIGR00793 166 FEPHVF----------------VGAVLPFLVGFALGNLD---PELRDFFSK-AVQTLIPFFAFALGNTIDLGVI 219 (314)
T ss_pred CCHHHH----------------HHHHHHHHHHHHHhcCC---HHHHHHhcc-CCCeeeehhhhhhcCCCCHHHH
Confidence 000000 12244778999999873 455555555 3678899999999999999877
No 55
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.06 E-value=0.0032 Score=69.19 Aligned_cols=130 Identities=11% Similarity=0.066 Sum_probs=82.8
Q ss_pred eeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHHHHhhc---
Q 044163 446 LRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSRS--- 522 (783)
Q Consensus 446 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~--- 522 (783)
.|||+|++..++....++-+..++...+...+++++|+++....... .+ ......+++++..+...+.
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~----~~-----~~~~~~eelle~~~~~~~~~l~ 76 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPE----GQ-----DELAAAEELLERVEVWATEDLG 76 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccc----hh-----HHHHHHHHHHHHHHHHHHHhhh
Confidence 57999999999999999999988855212468999999884321100 00 0112334555555544321
Q ss_pred -CCCCeEEEEEEEEc-----CCCChHHHHHHHHHhcCCCEEEEccc--CCCcccCCCcchhHHHHHHhccCCCce
Q 044163 523 -SGPAVAVQPFIMIS-----PYDTMHQSICRLLKDKFIPLILVPLF--PNGEVQGPNGTLHNFNINILHYAPCTV 589 (783)
Q Consensus 523 -~~~~v~v~~~t~vs-----~~~~m~~dI~~~A~e~~a~lIIlp~h--~~g~~~~~~~~~~~~~~~Vl~~ApCsV 589 (783)
....++++..+... ...+.++.|++.|+|.++|+|||+-. ++|. ...++.+ +.=|.++-|++
T Consensus 77 ~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~~~~----~~~~~~~-~~~~~~~~~~~ 146 (357)
T PRK12652 77 DDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNPGGT----APMLQPL-ERELARAGITY 146 (357)
T ss_pred cccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCCCCC----CcccchH-HHHHHhcCCce
Confidence 11357777666542 12689999999999999999999976 3332 2344443 33455666653
No 56
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=97.00 E-value=0.59 Score=50.23 Aligned_cols=145 Identities=11% Similarity=0.134 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChHHHHHhhhh---HHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhh
Q 044163 86 VVNTLATMGGIYFVFIVTVKMDKAMILRTVKK---TWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASR 162 (783)
Q Consensus 86 ~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~---~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~ 162 (783)
.+...-.+.+.++||..|+.+..+.+++..++ .+....+++++--+++++++..+. . ...+..|..+..
T Consensus 35 ~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~--l------~~~l~~Gl~ll~ 106 (319)
T COG0385 35 WLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP--L------PPELAVGLLLLG 106 (319)
T ss_pred hhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC--C------CHHHHHhHHhee
Confidence 34445578999999999999999999875543 333334444433345566665553 1 234555555543
Q ss_pred ccHH----HHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-cC----hhHHHHHHHHHHHHHHHHHHHHH
Q 044163 163 SSFA----VVVDAISELKLLNSELGQLTMSTAVIHEILGWLNSILSQLMR-GG----LQRILVVHVGAVCALSIFTIIVL 233 (783)
Q Consensus 163 TS~~----Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~-~~----~~~~~~~~~~~~i~f~~~~~~v~ 233 (783)
+.|+ .+...+. +.+. -.+++.+.++.+++.++.-++..+. ++ +.+..++.++..++.-.+.+.+.
T Consensus 107 ~~Pggv~S~~~t~lA-----kGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~ 180 (319)
T COG0385 107 CCPGGVASNAMTYLA-----KGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLL 180 (319)
T ss_pred eCCCchhHHHHHHHh-----cCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 3333332 2222 3566777788888887765555544 32 33445566666666666777788
Q ss_pred HHHHHHHHHHc
Q 044163 234 RLMIEWIIRRT 244 (783)
Q Consensus 234 r~~~~~l~~r~ 244 (783)
|+..+...++.
T Consensus 181 r~~~~~~~~~~ 191 (319)
T COG0385 181 RPLLPKWVERL 191 (319)
T ss_pred HHHHHHHHHHH
Confidence 88777666554
No 57
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=96.89 E-value=0.0092 Score=65.60 Aligned_cols=124 Identities=11% Similarity=0.052 Sum_probs=77.8
Q ss_pred cccEEEEeccCCccHHHHHHHHHHHhcCC--CeEEEEEEeeecCccccc-chhhhhHHHHHHHHHhhcCC-----CCCEE
Q 044163 609 FCYNVAVFFIGGPDDREAMALVSRMSGHP--GVSITVFRINLEENIVEN-ESEKHIDEVVMNEFVASNFG-----NASVV 680 (783)
Q Consensus 609 ~~~~I~v~f~GG~ddreAL~~a~rma~~~--~~~ltv~~~~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~-----~~~v~ 680 (783)
..+||+||+=|.+..+.|+++|..+|+.. +++++++++++....... +...+..++.+++.++.... ...+.
T Consensus 4 ~ykkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~~~~~~~~~~eelle~~~~~~~~~l~~~~~gV~ 83 (357)
T PRK12652 4 AANRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDPEGQDELAAAEELLERVEVWATEDLGDDASSVT 83 (357)
T ss_pred ccCeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCcccccchhHHHHHHHHHHHHHHHHHHHhhhcccCCCc
Confidence 35799999999999999999999999884 699999999875221111 11112223445544443211 13455
Q ss_pred EEEEEecC-------hHHHHHHHHhh--ccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCC
Q 044163 681 CRQIVAND-------TKQLVSAVRSL--ERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADF 743 (783)
Q Consensus 681 ~~e~~v~~-------~~e~~~~i~~~--~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df 743 (783)
+..+++.. | +..+.|.+. +.++||+|+|..-... .--|-|.++.-.|++.+.
T Consensus 84 ve~~vv~~~~~~~~~G-~pae~Iv~~Aee~~aDLIVm~~~~~~~----------~~~~~~~~~~~~~~~~~~ 144 (357)
T PRK12652 84 IETALLGTDEYLFGPG-DYAEVLIAYAEEHGIDRVVLDPEYNPG----------GTAPMLQPLERELARAGI 144 (357)
T ss_pred eEEEEEeccccccCCC-CHHHHHHHHHHHcCCCEEEECCCCCCC----------CCCcccchHHHHHHhcCC
Confidence 54444431 2 222233332 2579999999986432 224668899999998654
No 58
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=96.79 E-value=0.01 Score=56.30 Aligned_cols=131 Identities=16% Similarity=0.158 Sum_probs=80.8
Q ss_pred ccEEEEecc-CCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccc-------c-------chhhhhHHHHHHHHHhhcC
Q 044163 610 CYNVAVFFI-GGPDDREAMALVSRMSGHPGVSITVFRINLEENIVE-------N-------ESEKHIDEVVMNEFVASNF 674 (783)
Q Consensus 610 ~~~I~v~f~-GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~-------~-------~~~~~~d~~~l~~~~~~~~ 674 (783)
.++|++++- |.+..+.|++.+...+...+..++++.+.+...... . ...+...++.+++.+....
T Consensus 5 ~~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (154)
T COG0589 5 YKKILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPTALVSVALADAPIPLSEEELEEEAEELLAEAKALAE 84 (154)
T ss_pred cceEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 468899998 888899999999999999999999888875422110 0 0012223455555555331
Q ss_pred CCCCEEEEEEEecChHHHHHHHHhh--ccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEE
Q 044163 675 GNASVVCRQIVANDTKQLVSAVRSL--ERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILV 752 (783)
Q Consensus 675 ~~~~v~~~e~~v~~~~e~~~~i~~~--~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLV 752 (783)
...+...+..+..|....+.|.+. +.+.||+++|+++.. .|.+ -.||...+.++. .++++|||
T Consensus 85 -~~~~~~~~~~~~~g~~~~~~i~~~a~~~~adliV~G~~g~~---------~l~~-~llGsvs~~v~~----~~~~pVlv 149 (154)
T COG0589 85 -AAGVPVVETEVVEGSPSAEEILELAEEEDADLIVVGSRGRS---------GLSR-LLLGSVAEKVLR----HAPCPVLV 149 (154)
T ss_pred -HcCCCeeEEEEecCCCcHHHHHHHHHHhCCCEEEECCCCCc---------cccc-eeeehhHHHHHh----cCCCCEEE
Confidence 112221112222222211122211 247999999997432 1122 479999999999 78999999
Q ss_pred Eee
Q 044163 753 IQS 755 (783)
Q Consensus 753 vqq 755 (783)
++.
T Consensus 150 v~~ 152 (154)
T COG0589 150 VRS 152 (154)
T ss_pred Ecc
Confidence 975
No 59
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.62 E-value=0.072 Score=63.47 Aligned_cols=117 Identities=15% Similarity=-0.024 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHH
Q 044163 255 IIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAG-PPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFL 333 (783)
Q Consensus 255 ~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~-~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~ 333 (783)
+.+.++.+.++..++..+|+++++|=.++|+++... ...-.. .+.++.+ ..+-+.++...+|+++|+..++. ...
T Consensus 10 ~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~--~~~ 85 (621)
T PRK03562 10 ALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD-VESILHF-AEFGVVLMLFVIGLELDPQRLWK--LRR 85 (621)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC-HHHHHHH-HHHHHHHHHHHHHhCcCHHHHHH--HHH
Confidence 445566667788889999999999999999999643 111111 2335554 56667777788999999988722 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhH
Q 044163 334 ALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKG 375 (783)
Q Consensus 334 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG 375 (783)
.+..+-..-++.-.+..+..+.++|+++..++.+|..++.-.
T Consensus 86 ~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SS 127 (621)
T PRK03562 86 SIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSS 127 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 111111111222223334455677899999999998776543
No 60
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=96.45 E-value=1.7 Score=47.28 Aligned_cols=156 Identities=10% Similarity=-0.011 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHHHHHhchh--HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccch-hhH
Q 044163 255 IIAIMIGAITLGFIYEGLNSN--YMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIES-WRS 331 (783)
Q Consensus 255 ~~~vl~~~l~~~~lae~lG~~--~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~-~~~ 331 (783)
+...+....+.+++.+.+++. .++|+++.+.++.......-.+-+.+... ..-+.=..+|.+++...+.. ...
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~~~----aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLVNA----AQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHHH----HHHHHHHHHHccccHHHHHHHHHH
Confidence 445556667788888888885 67898888888775422122222222222 22233467899999877622 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccchhhHHHHHHHHHHHHHhHH
Q 044163 332 FLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDIQTFSELVLSNLVLTAIVT 411 (783)
Q Consensus 332 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~~~f~~lv~~~vl~t~i~~ 411 (783)
+...+...++.+..-.+.+++..+++++++.+++. .+.|-|.-+..+.....+.+.---..+.++=+..+ ..+.|
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~L---a~aPGGl~eM~l~A~~l~~d~~~V~~~q~~Rl~~v--~~~~p 307 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTALL---ATAPGGLAEMALIALALGADVAFVAAHQVVRLLFV--LLLAP 307 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HhCCccHHHHHHHHHHcCCChHHHHHHHHHHHHHH--HHHHH
Confidence 33345555555666788888889999999988763 47899988887766555443211122333222222 24567
Q ss_pred HHHHHhcc
Q 044163 412 PLIAIFYK 419 (783)
Q Consensus 412 pl~~~l~~ 419 (783)
++.+++.|
T Consensus 308 ~~~r~~~r 315 (318)
T PF05145_consen 308 FIARWLRR 315 (318)
T ss_pred HHHHHHHH
Confidence 77777654
No 61
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=96.30 E-value=1.1 Score=48.64 Aligned_cols=108 Identities=16% Similarity=0.220 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHhhhcCChHHHHHhhhhH---HHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHh---
Q 044163 88 NTLATMGGIYFVFIVTVKMDKAMILRTVKKT---WNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLAS--- 161 (783)
Q Consensus 88 ~~la~iGl~~llF~~Gle~d~~~l~~~~~~~---~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls--- 161 (783)
+....+++..++|..|+.++.+++++..++. ...-...+++.-++++.+...+.... ...+..|....
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~------~~~l~~Gl~~~~~l 103 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL------PPELALGLLILACL 103 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhccC------CHHHHHHHHHHhhC
Confidence 4667788889999999999999998765433 22222233333234555555554322 12234444332
Q ss_pred -hc-cHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 162 -RS-SFAVVVDAISELKLLNSELGQLTMSTAVIHEILGWLNSILSQLM 207 (783)
Q Consensus 162 -~T-S~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill~v~~~~ 207 (783)
.| +..|+. ... .+.+ -..++..+.++.+++.++.-+...+
T Consensus 104 PtTv~S~v~~---T~~--AgGN-~a~Al~~~~~snllgv~ltP~ll~l 145 (313)
T PF13593_consen 104 PTTVSSSVVL---TRL--AGGN-VALALFNAVLSNLLGVFLTPLLLLL 145 (313)
T ss_pred CchhhHHHHH---HHH--cCCC-HHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 22 333332 221 1222 2356666777777777766554443
No 62
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.29 E-value=0.16 Score=53.95 Aligned_cols=127 Identities=16% Similarity=0.106 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCch-hHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHH
Q 044163 261 GAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPLG-SALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELIL 339 (783)
Q Consensus 261 ~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~~-~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii 339 (783)
.....+.+++.++++.++|-.++|+++.... ++ -.-.+.++.+ ..+-+.++....|+++|++.+.. .+.....+.
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~--~~~~~~~~~ 78 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWK--LRKAAFGVG 78 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHH--HHHHHHHHH
Confidence 4456678899999999999999999997541 11 0111234444 45556677788999999988722 221222222
Q ss_pred HHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccch
Q 044163 340 VSAYLGK-VVGCILGLISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDI 393 (783)
Q Consensus 340 ~~~~~~K-~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~ 393 (783)
...++.- ++.++....+++.++.+++.+|..+++-.. -++..+-.|.+..+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts~--~v~~~il~~~~~~~~ 131 (273)
T TIGR00932 79 VLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSST--AVVVQVLKERGLLKT 131 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhHH--HHHHHHHHHcCcccC
Confidence 2222223 333444567789999999999998886532 333444555555443
No 63
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.26 E-value=0.16 Score=60.03 Aligned_cols=131 Identities=9% Similarity=0.087 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHH
Q 044163 257 AIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGP-PLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLAL 335 (783)
Q Consensus 257 ~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~-~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~ 335 (783)
.+++.+++++.++..++++.++|=.++|+++.... ..-+. .+.++.+ ..+-+-++....|+++|++.+.... ...
T Consensus 13 ~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~~--~~~ 88 (558)
T PRK10669 13 GGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAVK--SIA 88 (558)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHHh--hHH
Confidence 34556667778888999999999999999997541 11111 1234443 4555556667789999998872211 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccch
Q 044163 336 ELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDI 393 (783)
Q Consensus 336 ~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~ 393 (783)
....+..++.-++.+++....+++++.+++.+|..++.-.. .++..+-.+.|.++.
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s 144 (558)
T PRK10669 89 IPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDS 144 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccC
Confidence 11111122222333444556778999999999987776333 444556666676654
No 64
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.24 E-value=0.17 Score=60.07 Aligned_cols=115 Identities=13% Similarity=0.027 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCC-CchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHH
Q 044163 255 IIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGP-PLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFL 333 (783)
Q Consensus 255 ~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~-~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~ 333 (783)
..+.++...++..++..+|+++++|=.++|+++.... ..-.. .+.++.+ ..+-+.++...+|+++|++.++......
T Consensus 10 ~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LLF~iGLel~~~~l~~~~~~~ 87 (601)
T PRK03659 10 GVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-VDEILHF-SELGVVFLMFIIGLELNPSKLWQLRRSI 87 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-HHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3445555556677888999999999999999997531 11111 2334444 4555666777789999998873221111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhh
Q 044163 334 ALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNI 373 (783)
Q Consensus 334 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~ 373 (783)
+ .+....++.-.+.......++|+++..++.+|..++.
T Consensus 88 ~--~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~ 125 (601)
T PRK03659 88 F--GVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAM 125 (601)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 1 1111111111111222344568899999888875543
No 65
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.18 Score=56.76 Aligned_cols=144 Identities=12% Similarity=0.120 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCC-CC---CchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchh
Q 044163 254 YIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPA-GP---PLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESW 329 (783)
Q Consensus 254 ~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~-~~---~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~ 329 (783)
.+..++..+...+.+.+.+|+++++|-.++|+++.+ .. ...++..+-+..++ +-++...+|+++|+..++..
T Consensus 10 ~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelG----vi~LlF~~GLE~~~~~l~~~ 85 (397)
T COG0475 10 QLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELG----VVFLLFLIGLEFDLERLKKV 85 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHh----HHHHHHHHHHCcCHHHHHHh
Confidence 355566666777799999999999999999999997 21 22344444455543 33445568999999888221
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--HHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccchhhHHHHHHHHHH
Q 044163 330 RSFLALELILVSAYLGKVVGC--ILGLISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDIQTFSELVLSNLV 405 (783)
Q Consensus 330 ~~~~~~~~ii~~~~~~K~~~~--~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~~~f~~lv~~~vl 405 (783)
.... ........+..=++.+ +... .+++++.+++.+|..+..-.. -+.+.+-.|.|....+.-...+...++
T Consensus 86 ~~~~-~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~~l~~~i~ 159 (397)
T COG0475 86 GRSV-GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQLILGALVF 159 (397)
T ss_pred chhh-hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHHHHHHHHH
Confidence 1110 1222222222222222 2223 579999999999988766533 233444555555554444443333333
No 66
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=96.05 E-value=0.2 Score=54.40 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=36.9
Q ss_pred HHHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044163 97 YFVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLIISFLVAHMLRD 142 (783)
Q Consensus 97 ~llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~ 142 (783)
.++|..|-.+|++...+.-+|...+.+.-+.+..+++.+++.++..
T Consensus 55 ~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~~~g~ 100 (326)
T PRK05274 55 VFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGKFIGE 100 (326)
T ss_pred HHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhhcchH
Confidence 7889999999999988888888777777777777777777666543
No 67
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=96.05 E-value=1.7 Score=46.85 Aligned_cols=171 Identities=15% Similarity=0.173 Sum_probs=88.4
Q ss_pred hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHHH--HH-HHHH-HHHHHHH
Q 044163 59 SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWNV--SM-TVLL-VPLIISF 134 (783)
Q Consensus 59 aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~i--~~-~~~l-ip~~~g~ 134 (783)
+|+.+|-..=+. .+.+- .-+...++.--.+|+.+.|+=.=+++|.+++++..+..-.+ ++ ..++ -|+ +.+
T Consensus 26 ~Gi~lG~~~p~~----~~~l~-~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~-lm~ 99 (342)
T COG0798 26 IGILLGVHFPGL----AQLLG-KLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPL-LMF 99 (342)
T ss_pred HHHHHHhcccch----hhhcc-cceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHH-HHH
Confidence 888888543221 11110 01233345556788888899888999999998876543222 21 2222 233 345
Q ss_pred HHHHHhhccccccchhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh-c-Chh
Q 044163 135 LVAHMLRDHVPRINLKRFYFYISFLASRSSFAVVVDAISELKLLNSELGQLTMSTAVIHEILGWLNSILSQLMR-G-GLQ 212 (783)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~-~-~~~ 212 (783)
++++++.... ++.....+++|.+=| ||...+- ++ +.+.+. ..++..-.+||++.+++.+...... + .+.
T Consensus 100 ~la~~fl~~~--pey~~GlILlglApC-~aMVivw---~~--La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~~~l~v~~~ 170 (342)
T COG0798 100 ALAWFFLPDE--PEYRAGLILLGLAPC-IAMVIVW---SG--LAKGDR-ELTLVLVAFNSLLQIVLYAPLGKFFLGVISI 170 (342)
T ss_pred HHHHHHhCCC--HHHHHHHHHHHhhhh-HHHHHHH---Hh--hccCcH-hhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 5555555332 111122233333222 2322222 33 233332 3456666789999999887666544 2 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 044163 213 RILVVHVGAVCALSIFTIIVLRLMIEWIIRRT 244 (783)
Q Consensus 213 ~~~~~~~~~~i~f~~~~~~v~r~~~~~l~~r~ 244 (783)
....+.++..+...+.+-++...+.+++..|.
T Consensus 171 ~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~ 202 (342)
T COG0798 171 SVPFWTIAKSVLLYLGIPLIAGVLTRYILIKK 202 (342)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22345555555555555555566666666553
No 68
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=95.91 E-value=1.2 Score=48.78 Aligned_cols=293 Identities=11% Similarity=0.080 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHHHHhhhcCC--hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhhcc
Q 044163 87 VNTLATMGGIYFVFIVTVKMD--KAMILRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSS 164 (783)
Q Consensus 87 l~~la~iGl~~llF~~Gle~d--~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS 164 (783)
++.+.+++++.++.+.|--+. .+.++|.--..-.+ .|++..++...+ --...... +.+......++.+.++...
T Consensus 5 ~n~~~tl~~a~lllllG~~l~kki~fl~k~~IPepVv--gG~i~ail~~~~-~~~~~~~~-~fd~~l~~~fmliFFttig 80 (404)
T COG0786 5 LNALETLILAILLLLLGRFLVKKIKFLKKYCIPEPVV--GGLIFAILLLLL-HGFGGVSL-NFDTSLQDVFMLIFFATIG 80 (404)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHccCCcchH--HHHHHHHHHHHH-HhcceEEE-eCCcccccHHHHHHHHHhc
Confidence 567788888989999997553 33333322211111 122222211111 00011111 1111122233334444433
Q ss_pred HHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHH---------H-HHh--cC--hhHHH------------HHH
Q 044163 165 FAVVVDAISELKLLNSELGQLTMSTAVIHEILGWLNSILS---------Q-LMR--GG--LQRIL------------VVH 218 (783)
Q Consensus 165 ~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill~v~---------~-~~~--~~--~~~~~------------~~~ 218 (783)
...-.+.+++-|..--..--.+..-+..++.+++.+...+ . ++. +| +...+ ...
T Consensus 81 lsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~~~~f~~~G~~~A~~v 160 (404)
T COG0786 81 LSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAWGPTFEDLGAEGATEV 160 (404)
T ss_pred cccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHHHHHHHhcCCcchHHH
Confidence 3444455566553222333445556777888877654322 1 111 11 11100 001
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHcC-CCCCCch----------------------H--H-HHHHHHHHHHHHHHHHH
Q 044163 219 VGAVCALSI-FTIIVLRLMIEWIIRRTP-ERKPVKD----------------------V--Y-IIAIMIGAITLGFIYEG 271 (783)
Q Consensus 219 ~~~~i~f~~-~~~~v~r~~~~~l~~r~~-~~~~~~e----------------------~--~-~~~vl~~~l~~~~lae~ 271 (783)
-....-|.+ ..+.++.|+.+|+++|.. +.++.++ . . +.++.+.+.+..++.+.
T Consensus 161 a~A~ATfGlv~GgliGgpva~~li~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~i~i~~~vG~~i~~~ 240 (404)
T COG0786 161 AMASATFGLVAGGLIGGPVARWLIKKNKLKPDPTKDPDDDLVDVAFEGPKSTRLITAEPLIETLAIIAICLAVGKIINQL 240 (404)
T ss_pred HHHHHHHHHHHhHhcCcHHHHHHHHhcCCCCCCCCCchhhcchhhhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122333 344567899999998751 1011111 1 1 22233333344556666
Q ss_pred hc-----hhHHHHHHHHHHhcCCCCCc--hhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHH
Q 044163 272 LN-----SNYMIGAAMFGLVIPAGPPL--GSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYL 344 (783)
Q Consensus 272 lG-----~~~~lGaF~aGl~l~~~~~~--~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~ 344 (783)
++ +....++++.|+++.+.-+. ..++.++..+...+.-+-+|....=|++.+..+ ..-...+.+++.+-..+
T Consensus 241 l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL-~~l~lpl~viL~vQ~i~ 319 (404)
T COG0786 241 LKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWEL-ADLALPLLVILAVQTIV 319 (404)
T ss_pred HhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhccccHHHHHHHHHHH
Confidence 65 45778999999999886221 122333333334677788888888888888777 32222333444444445
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHhhh-hHHHHHHHHhh
Q 044163 345 GKVVGCILGLISFKASIRNALLFSCFLNI-KGIIELMHFLR 384 (783)
Q Consensus 345 ~K~~~~~l~~~~~~~~~~~~l~lg~~m~~-rG~~~lii~~i 384 (783)
.-+.+.+...|..|-+...+...+.-+.. -|...-+++++
T Consensus 320 m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM 360 (404)
T COG0786 320 MALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANM 360 (404)
T ss_pred HHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence 56667777888888776555543333322 35566666665
No 69
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=95.87 E-value=0.62 Score=46.59 Aligned_cols=106 Identities=12% Similarity=0.154 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhhcCChHHHHHhhhhHHHH--HH-HHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhhcc-HHHH
Q 044163 93 MGGIYFVFIVTVKMDKAMILRTVKKTWNV--SM-TVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSS-FAVV 168 (783)
Q Consensus 93 iGl~~llF~~Gle~d~~~l~~~~~~~~~i--~~-~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS-~~Vv 168 (783)
+.+.+.||..|+++|++++++..|+...+ ++ .++++-=++++++++.+... ...+..|..+...+ -+..
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~-------~~~~~~Gl~l~~~~P~~~~ 74 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPL-------SPALALGLLLVAACPGGPA 74 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT---------HHHHHHHHHHHHS-B-TH
T ss_pred hhhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHHhcCCcHHH
Confidence 46788999999999999999877654433 22 22333223445555222222 12233333332221 1223
Q ss_pred HHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044163 169 VDAISELKLLNSELGQLTMSTAVIHEILGWLNSILSQLMR 208 (783)
Q Consensus 169 ~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~ 208 (783)
+.+...+. +.+. .++++...++.+.+.++.-+...+.
T Consensus 75 s~~~t~l~--~Gd~-~ls~~lt~istll~~~~~P~~~~l~ 111 (187)
T PF01758_consen 75 SNVFTYLA--GGDV-ALSVSLTLISTLLAPFLMPLLLYLL 111 (187)
T ss_dssp HHHHHHHT--T--H-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCc-ccccceeeHHHHHHHHHHHHHHHHH
Confidence 33334432 3332 3666667777777777765555544
No 70
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.83 E-value=0.31 Score=52.56 Aligned_cols=161 Identities=16% Similarity=0.062 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHH----HhchhHHHHHHHHHHhcCC-CCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhH
Q 044163 257 AIMIGAITLGFIYE----GLNSNYMIGAAMFGLVIPA-GPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRS 331 (783)
Q Consensus 257 ~vl~~~l~~~~lae----~lG~~~~lGaF~aGl~l~~-~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~ 331 (783)
+.+++.....++++ ..++++.+=|.+.|+++.| .....+...+-++.- ...++.+=-+..|.++++..+ ....
T Consensus 5 l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i-~~~G 82 (305)
T PF03601_consen 5 LCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDI-LALG 82 (305)
T ss_pred HHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHH-HHhC
Confidence 34444445555555 4677888889999999998 544445555545543 457788888999999999887 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCc--cchhhHHHHHHHHHHHHHh
Q 044163 332 FLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRKY--VDIQTFSELVLSNLVLTAI 409 (783)
Q Consensus 332 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gi--i~~~~f~~lv~~~vl~t~i 409 (783)
+...+..++..++.=.++.++..|.+|++.+.+..+|.+.+.=|.-+++...=..+.+- +.-. ...+++...+..++
T Consensus 83 ~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a~~~~~a~a-va~V~lfg~vam~~ 161 (305)
T PF03601_consen 83 WKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKAKEEDVAYA-VATVFLFGTVAMFL 161 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccCCCCceeee-ehHHHHHHHHHHHH
Confidence 32222222233333334444444999999999999999988878777666554333321 1111 12222233333445
Q ss_pred HHHHHHHhccc
Q 044163 410 VTPLIAIFYKP 420 (783)
Q Consensus 410 ~~pl~~~l~~~ 420 (783)
.|.+.+++.-+
T Consensus 162 ~P~l~~~l~l~ 172 (305)
T PF03601_consen 162 YPLLGHALGLS 172 (305)
T ss_pred HHHHHHHhCCC
Confidence 56666665544
No 71
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=95.80 E-value=3.4 Score=45.97 Aligned_cols=95 Identities=13% Similarity=0.088 Sum_probs=54.4
Q ss_pred hhHHHHHHHHHHhcCCCCCc--hhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Q 044163 274 SNYMIGAAMFGLVIPAGPPL--GSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCI 351 (783)
Q Consensus 274 ~~~~lGaF~aGl~l~~~~~~--~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~ 351 (783)
+...++|++.|+++.+..+. ..++..+.-+...++.+-+|.+..=|.+++..+ ......+.+++++-.++.=+...+
T Consensus 247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I~~~sL~~fl~~almsl~l~~l-~~~a~Plliil~~q~i~~~~f~~f 325 (368)
T PF03616_consen 247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRISGISLDLFLAMALMSLKLWVL-ADYALPLLIILAVQTILMVLFAYF 325 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHHHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45679999999999874210 111322222233566666666667778888887 322222233333334444555666
Q ss_pred HHHHhcCCChHHHHHHHHH
Q 044163 352 LGLISFKASIRNALLFSCF 370 (783)
Q Consensus 352 l~~~~~~~~~~~~l~lg~~ 370 (783)
+..|..|-++ |+..++.+
T Consensus 326 v~fr~~gkdy-daavm~~G 343 (368)
T PF03616_consen 326 VTFRVMGKDY-DAAVMSAG 343 (368)
T ss_pred HhhhhhCCCh-hHHHHhhh
Confidence 7778888775 66665443
No 72
>PRK10490 sensor protein KdpD; Provisional
Probab=95.73 E-value=0.068 Score=66.51 Aligned_cols=124 Identities=11% Similarity=0.115 Sum_probs=84.5
Q ss_pred CCceeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHHHHhhc
Q 044163 443 SSELRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSRS 522 (783)
Q Consensus 443 ~~elrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 522 (783)
....|||||++...+.+.+++-+..++... ....+++||.....+.. .....+++.+.++ ++++
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA~~~--~a~~~~l~V~~~~~~~~-------------~~~~~~~l~~~~~-lA~~ 311 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLAARL--GSVWHAVYVETPRLHRL-------------PEKKRRAILSALR-LAQE 311 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHHHhc--CCCEEEEEEecCCcCcC-------------CHHHHHHHHHHHH-HHHH
Confidence 456899999999999999999999888764 46799999853211110 1123345555554 5544
Q ss_pred CCCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCC-CceEEE
Q 044163 523 SGPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAP-CTVGIF 592 (783)
Q Consensus 523 ~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~Ap-CsVgIl 592 (783)
..++ +. .+ ..+++++.|.+.|++++++.||||-.....+ ..-+++.+++++.+| -+|-|+
T Consensus 312 lGa~--~~---~~-~~~dva~~i~~~A~~~~vt~IViG~s~~~~~----~~~~s~~~~l~r~~~~idi~iv 372 (895)
T PRK10490 312 LGAE--TA---TL-SDPAEEKAVLRYAREHNLGKIIIGRRASRRW----WRRESFADRLARLGPDLDLVIV 372 (895)
T ss_pred cCCE--EE---EE-eCCCHHHHHHHHHHHhCCCEEEECCCCCCCC----ccCCCHHHHHHHhCCCCCEEEE
Confidence 3333 22 12 2479999999999999999999997622221 112489999999999 565554
No 73
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=95.71 E-value=1.5 Score=48.80 Aligned_cols=125 Identities=10% Similarity=0.007 Sum_probs=76.2
Q ss_pred HHHHHhchhHHHHHHHHHHhcCCC---CCchhHHHHHHHHHHHHHHHHHHHHHhccc-ccccccchhhHHHHHHHHHHHH
Q 044163 267 FIYEGLNSNYMIGAAMFGLVIPAG---PPLGSALVEKSELIITHFFLPFFYIRLGQL-TDIHSIESWRSFLALELILVSA 342 (783)
Q Consensus 267 ~lae~lG~~~~lGaF~aGl~l~~~---~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~-~dl~~l~~~~~~~~~~~ii~~~ 342 (783)
.+...+++|+..-..++=.++.-. |+.-++=..+...+...-+.+-..+-+|+. +|++.+...-++. .+++++..
T Consensus 264 ll~~~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~-~vv~~~~~ 342 (414)
T PF03390_consen 264 LLSKLIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQ-YVVIVLAT 342 (414)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHH-HHHHHHHH
Confidence 345566777655444443333322 222223334555555566666677778888 8987762222332 34555566
Q ss_pred HHHHHHHHHHHHHhcCCChHHHH-HHHHHhhhh-HHHHHHHHhhhcccCccc
Q 044163 343 YLGKVVGCILGLISFKASIRNAL-LFSCFLNIK-GIIELMHFLRWRSRKYVD 392 (783)
Q Consensus 343 ~~~K~~~~~l~~~~~~~~~~~~l-~lg~~m~~r-G~~~lii~~i~~~~gii~ 392 (783)
+++-.+++++.+++.|+-+-|+- ..|+.|+.+ |.-++++.+-+.+.++++
T Consensus 343 Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~RM~Lmp 394 (414)
T PF03390_consen 343 VLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANRMELMP 394 (414)
T ss_pred HHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhhccccc
Confidence 77888899999999998777754 445467666 455677777777777655
No 74
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.19 E-value=0.37 Score=56.86 Aligned_cols=118 Identities=10% Similarity=0.019 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCchh--HHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHH
Q 044163 257 AIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPLGS--ALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLA 334 (783)
Q Consensus 257 ~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~~~--~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~ 334 (783)
+++++..+++.++..+|++.+++-.++|+++.....-.- .-.+-.+.+ ..+.+++.....|+++|+..+ . ..+..
T Consensus 13 ~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i-~~l~L~~iLF~~Gl~~~~~~l-~-~~~~~ 89 (562)
T PRK05326 13 LLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLV-GNLALAVILFDGGLRTRWSSF-R-PALGP 89 (562)
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHH-HHHHHHHHHHcCccCCCHHHH-H-HHHHH
Confidence 344444556677888899999999999999876421100 111223333 678888888899999999887 2 22322
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHhcCCChHHHHHHHHHhhhhHHH
Q 044163 335 LELILVSAYLGK-VVGCILGLISFKASIRNALLFSCFLNIKGII 377 (783)
Q Consensus 335 ~~~ii~~~~~~K-~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~ 377 (783)
+..+....++.- .+.++....++++++.+++.+|..+++-...
T Consensus 90 ~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a 133 (562)
T PRK05326 90 ALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAA 133 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchH
Confidence 222222222222 2223444566799999999999888776543
No 75
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.96 E-value=7 Score=42.77 Aligned_cols=84 Identities=12% Similarity=0.250 Sum_probs=50.1
Q ss_pred ccCchhHHHh--hheeecccccCCccccccccccccchH-HHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHHHHHHH
Q 044163 49 TSVLPVVMIQ--SGIIMGRSVFGKNKIYQDIMYRGREML-VVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWNVSMTV 125 (783)
Q Consensus 49 ~~~lP~l~~~--aGiilGPs~lg~~~~~~~~lfp~~~~~-~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~ 125 (783)
+++++.++.- .|+++|+......|. . +. +..+ .-+.+-.+|++ +.|.+++++++.+.+.+.+.+....
T Consensus 28 ~~~l~~~~~AillG~~l~n~~~~~~~~---~-~~-~Gi~f~~k~lLr~gIV----LlG~~l~~~~i~~~G~~~l~~~~~~ 98 (335)
T TIGR00698 28 DPALSALFLAILLGMVAGNTIYPQRDE---E-KK-RGVLFAKPFLLRIGIT----LYGFRLTFPYIADVGPNEIVADTLI 98 (335)
T ss_pred cCCCcHHHHHHHHHHHHhccccccchh---h-cc-chHHHHHHHHHHHHHH----HHCccccHHHHHHhhHHHHHHHHHH
Confidence 3456555533 888888754221211 0 00 1111 23356667766 4699999999999999888776666
Q ss_pred HHHHHHHHHHHH-HHhh
Q 044163 126 LLVPLIISFLVA-HMLR 141 (783)
Q Consensus 126 ~lip~~~g~~~~-~~l~ 141 (783)
+...+.+++.++ ..++
T Consensus 99 v~~~~~~~~~~g~k~l~ 115 (335)
T TIGR00698 99 LTSTFFLTVFLGSSRLK 115 (335)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 666666555555 3443
No 76
>COG2855 Predicted membrane protein [Function unknown]
Probab=94.91 E-value=0.35 Score=52.04 Aligned_cols=115 Identities=14% Similarity=0.038 Sum_probs=81.6
Q ss_pred HHHHHhchhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHH
Q 044163 267 FIYEGLNSNYMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGK 346 (783)
Q Consensus 267 ~lae~lG~~~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K 346 (783)
...+..|+++.+=|.+.|+++...++...+...-++.- .-.++.+=.+..|++++++.+ ..-.+. .+.+.+..+..-
T Consensus 30 ~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i-~~~G~~-~v~~~~~~l~~t 106 (334)
T COG2855 30 FFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDI-ADVGGS-GVLIIAITLSST 106 (334)
T ss_pred HHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHH-HHcCcc-HHHHHHHHHHHH
Confidence 34455666788889999999997655554554445443 566777778889999999887 222222 234444455566
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHhh
Q 044163 347 VVGCILGLISFKASIRNALLFSCFLNIKGIIELMHFLR 384 (783)
Q Consensus 347 ~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i 384 (783)
++.++..++++|+|++.+..+|.+-+.=|..+++...-
T Consensus 107 ~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~p 144 (334)
T COG2855 107 FLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAP 144 (334)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCC
Confidence 77777778899999999999999988888877666543
No 77
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=94.86 E-value=4.2 Score=43.97 Aligned_cols=126 Identities=14% Similarity=0.243 Sum_probs=69.6
Q ss_pred hheeecccccCCccccccccccccchHH-HHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 044163 59 SGIIMGRSVFGKNKIYQDIMYRGREMLV-VNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLIISFLVA 137 (783)
Q Consensus 59 aGiilGPs~lg~~~~~~~~lfp~~~~~~-l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~g~~~~ 137 (783)
.|+++|+..++..+.+ . +..+. -+.+-.+|++ +.|.++++.++.+.+.+.+.+....+...+.+++.++
T Consensus 35 lG~~i~n~~~~~~~~~-----~-~Gi~~~~k~~Lr~gIV----LlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg 104 (305)
T PF03601_consen 35 LGMLIGNLFFGLPARF-----K-PGIKFSSKKLLRLGIV----LLGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLG 104 (305)
T ss_pred HHHHHhhhccCCcHHH-----H-hHHHHHHHHHHHHHHH----HHCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 8999986344432211 0 12222 2366677766 5699999999999999888877777777777766666
Q ss_pred -HHhhccccccchhhHHHHHHHHHhh---ccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 044163 138 -HMLRDHVPRINLKRFYFYISFLASR---SSFAVVVDAISELKLLNSELGQLTMSTAVIHEILGWLNSILS 204 (783)
Q Consensus 138 -~~l~~~~~~~~~~~~~l~lg~~ls~---TS~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill~v~ 204 (783)
.+++.. ...+++++.-.++ ++...+.++++- +.+.-..+++.-.+=+.++.+++-.+
T Consensus 105 ~r~~~l~------~~~~~Lia~GtsICG~SAi~A~a~~i~a----~~~~~a~ava~V~lfg~vam~~~P~l 165 (305)
T PF03601_consen 105 RRLFGLD------RKLAILIAAGTSICGASAIAATAPVIKA----KEEDVAYAVATVFLFGTVAMFLYPLL 165 (305)
T ss_pred HHHhCCC------HHHHHHHHhhcccchHHHHHHHcccccC----CCCceeeeehHHHHHHHHHHHHHHHH
Confidence 555433 2445555543333 333333333322 22222334444444444455444433
No 78
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=94.83 E-value=7.6 Score=42.51 Aligned_cols=99 Identities=13% Similarity=0.210 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhhcCChHHHHHhhhhHHHH---HHHHHH-HHHHHHHHHHHHhhccccccchhhHHHHHHHHHhhccHHH
Q 044163 92 TMGGIYFVFIVTVKMDKAMILRTVKKTWNV---SMTVLL-VPLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSSFAV 167 (783)
Q Consensus 92 ~iGl~~llF~~Gle~d~~~l~~~~~~~~~i---~~~~~l-ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~V 167 (783)
.++++++||-.|++++++++++..|+...+ -+.+++ .|+ +++.++..+... ...+.+|..+....|.-
T Consensus 46 ~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Pl-la~~l~~l~~~~-------~p~l~~GliLv~~~Pgg 117 (328)
T TIGR00832 46 AIGLILMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPF-LMFLLAWLFLRD-------LFEYIAGLILLGLARCI 117 (328)
T ss_pred HHHHHHHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHH-HHHHHHHHHcCC-------CHHHHHHHHHHHhcchH
Confidence 356668999999999999998866543332 222332 343 455666554222 12355555444333222
Q ss_pred -HHHHHHhccccCChhHHHHHHHHHHHHHHHHHHH
Q 044163 168 -VVDAISELKLLNSELGQLTMSTAVIHEILGWLNS 201 (783)
Q Consensus 168 -v~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill 201 (783)
.+.+...+. +.+.. ++++.+.++-+++.++.
T Consensus 118 ~~S~v~T~lA--kGnva-lsv~lt~~stLl~~~~~ 149 (328)
T TIGR00832 118 AMVFVWNQLA--KGDPE-YTLVLVAVNSLFQVFLY 149 (328)
T ss_pred HHHHHHHHHc--CCCHH-HHHHHHHHHHHHHHHHH
Confidence 223333332 33332 44445555555555444
No 79
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=94.52 E-value=1.5 Score=47.58 Aligned_cols=85 Identities=13% Similarity=0.125 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHhccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH-HHhhhhHH-HHHHHH
Q 044163 306 THFFLPFFYIRLGQL-TDIHSIESWRSFLALELILVSAYLGKVVGCILGLISFKASIRNALLFS-CFLNIKGI-IELMHF 382 (783)
Q Consensus 306 ~~~f~PlFFv~~G~~-~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg-~~m~~rG~-~~lii~ 382 (783)
+.+.-|+. +.+|.. +|+..+...-+|.. +++++..+++-..+.++.+|+.|+-+-|+...+ +.|+.+|. -++++.
T Consensus 326 k~~t~~Lm-~giGv~ytdl~ev~~alt~~~-vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVL 403 (438)
T COG3493 326 KNLTWPLM-AGIGVAYTDLNEVAAALTWQN-VIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVL 403 (438)
T ss_pred HhhHHHHH-HhhhhccccHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHh
Confidence 44445554 345665 78776622223432 333344556778888999999998777766555 88888754 457777
Q ss_pred hhhcccCccc
Q 044163 383 LRWRSRKYVD 392 (783)
Q Consensus 383 ~i~~~~gii~ 392 (783)
+-+-+.++++
T Consensus 404 sAa~RM~Lmp 413 (438)
T COG3493 404 SAADRMELMP 413 (438)
T ss_pred hhcchhcccc
Confidence 7666666655
No 80
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.49 E-value=1.4 Score=48.04 Aligned_cols=126 Identities=11% Similarity=-0.036 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHH-----hchhHHHHHHHHHHhcCCCC--CchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchh
Q 044163 257 AIMIGAITLGFIYEG-----LNSNYMIGAAMFGLVIPAGP--PLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESW 329 (783)
Q Consensus 257 ~vl~~~l~~~~lae~-----lG~~~~lGaF~aGl~l~~~~--~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~ 329 (783)
+.+.+.+...++++. .++++.+=|.+.|+++.|.. +..+....-++ +....++-+=-+..|+++++..+ ..
T Consensus 9 l~~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i-~~ 86 (335)
T TIGR00698 9 QMALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYI-AD 86 (335)
T ss_pred HHHHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHH-HH
Confidence 334444445555543 47788888999999999842 12222222222 23445566667888999999887 22
Q ss_pred hHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHhhh
Q 044163 330 RSFLALELILVSAYLGKVV-GCILGLISFKASIRNALLFSCFLNIKGIIELMHFLRW 385 (783)
Q Consensus 330 ~~~~~~~~ii~~~~~~K~~-~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~ 385 (783)
..+. .+.+++..+..-++ +.++..|.+|++++.+..+|.+.+.=|..+++...=.
T Consensus 87 ~G~~-~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~ 142 (335)
T TIGR00698 87 VGPN-EIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPV 142 (335)
T ss_pred hhHH-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccc
Confidence 2222 22222233333344 4445558999999999999998888887776665433
No 81
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.18 E-value=1.1 Score=55.20 Aligned_cols=136 Identities=10% Similarity=0.080 Sum_probs=70.7
Q ss_pred CcccEEEEeccCCccHHHHHHHHHHH--hcCCCeEEEEEEeeecCcc----------c--c-cc--hhhhhHHHHHHHHH
Q 044163 608 KFCYNVAVFFIGGPDDREAMALVSRM--SGHPGVSITVFRINLEENI----------V--E-NE--SEKHIDEVVMNEFV 670 (783)
Q Consensus 608 ~~~~~I~v~f~GG~ddreAL~~a~rm--a~~~~~~ltv~~~~~~~~~----------~--~-~~--~~~~~d~~~l~~~~ 670 (783)
++..||++++-+-.|-...+.++... .+++...+.++|+++-... . . .+ .+...-|+.++.|+
T Consensus 456 ~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL~~r~~~~l~~h~~~~~~~~~~~~~~~~~~~i~~af~ 535 (832)
T PLN03159 456 DAELRMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVELTGRASAMLIVHNTRKSGRPALNRTQAQSDHIINAFE 535 (832)
T ss_pred CCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEeecCCCccceeeeecccccccccccccccccHHHHHHH
Confidence 34569999998666666677776654 3445678888888762110 0 0 00 01111234455443
Q ss_pred hhcCCCCCEEEEE-EEecChHHHHHHHHhh--ccCCcEEEEcccCCCCchhhhc-cCCCCCCCccchhhhhhhcCCCCCC
Q 044163 671 ASNFGNASVVCRQ-IVANDTKQLVSAVRSL--ERSNDLVIVGRQQAFSSQLEEE-MRPWVEYEELGIIGDLLASADFVGG 746 (783)
Q Consensus 671 ~~~~~~~~v~~~e-~~v~~~~e~~~~i~~~--~~~~DLvIVG~~~~~~s~~~~g-l~~W~e~~eLG~igd~Las~df~~~ 746 (783)
.-...+..+.-.. ..+..-+.+.+-|... ++..+|+|++=++... ..| +. ++.+.++.+=+.+-+ .+
T Consensus 536 ~~~~~~~~v~v~~~t~vs~~~~mh~dIc~~A~d~~~slIilpfhk~~~---~dg~~~--~~~~~~r~~n~~VL~----~A 606 (832)
T PLN03159 536 NYEQHAGCVSVQPLTAISPYSTMHEDVCNLAEDKRVSLIIIPFHKQQT---VDGGME--ATNPAFRGVNQNVLA----NA 606 (832)
T ss_pred HHHhhcCceEEEEEEEEeCcccHHHHHHHHHHhcCCCEEEECCCCccC---CCCCcc--ccCchHHHHHHHHHc----cC
Confidence 3210112333222 1233323344444433 2558999999875321 122 22 234567777777777 56
Q ss_pred cccEEE
Q 044163 747 MMSILV 752 (783)
Q Consensus 747 ~~sVLV 752 (783)
+|||-|
T Consensus 607 pCsVgI 612 (832)
T PLN03159 607 PCSVGI 612 (832)
T ss_pred CCCEEE
Confidence 777665
No 82
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=93.69 E-value=1.5 Score=52.83 Aligned_cols=70 Identities=9% Similarity=0.092 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCChHHHHHHHHHhhhhHHH
Q 044163 306 THFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLIS--FKASIRNALLFSCFLNIKGII 377 (783)
Q Consensus 306 ~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~--~~~~~~~~l~lg~~m~~rG~~ 377 (783)
..+.+++-....|++++...+ . ..|..+..+++.++..-++++.+.+.+ .|+++..++.+|.+++|-.-+
T Consensus 75 teIvL~I~LFa~Gl~L~~~~L-r-r~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 75 SRILLCLQVFAVSVELPRKYM-L-KHWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHhCCHHHH-H-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 566777777789999999887 2 345444344444444444444445443 499999999999999987654
No 83
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=93.68 E-value=12 Score=40.19 Aligned_cols=105 Identities=11% Similarity=0.063 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHhhh--hHHHHHHH-HH-HHHHHHHHHHHHHhhccccccchhhHHHHHHHHHh-hcc
Q 044163 90 LATMGGIYFVFIVTVKMDKAMILRTVK--KTWNVSMT-VL-LVPLIISFLVAHMLRDHVPRINLKRFYFYISFLAS-RSS 164 (783)
Q Consensus 90 la~iGl~~llF~~Gle~d~~~l~~~~~--~~~~i~~~-~~-lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls-~TS 164 (783)
+.-..+.+.||..|+.++.+++++..+ +....++. .+ +.|++. +.++.+++.. .....|..+. .+.
T Consensus 9 ~~~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla-~~l~~~~~l~--------~~~~~glvL~~~~P 79 (286)
T TIGR00841 9 ILLILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTG-FLLAKVFKLP--------PELAVGVLIVGCCP 79 (286)
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHH-HHHHHHhCCC--------HHHHHHHHheeeCC
Confidence 334448899999999999999988765 33333333 33 456543 5555554321 2223333332 222
Q ss_pred HHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 165 FAVVVDAISELKLLNSELGQLTMSTAVIHEILGWLNSILSQL 206 (783)
Q Consensus 165 ~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill~v~~~ 206 (783)
.++...++.+.---| ..++.+...++-+++.+.+-+...
T Consensus 80 ~~~~s~v~t~~~~gn---~~la~~~~~~stlls~vt~Pl~l~ 118 (286)
T TIGR00841 80 GGTASNVFTYLLKGD---MALSISMTTCSTLLALGMMPLLLY 118 (286)
T ss_pred CchHHHHHHHHhCCC---HhhhhHHHHHHHHHHHHHHHHHHH
Confidence 233333444432123 345556666666766666554444
No 84
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=93.58 E-value=13 Score=40.57 Aligned_cols=119 Identities=8% Similarity=-0.005 Sum_probs=77.0
Q ss_pred chhHHHHHHHHHHhcCCCCCchhHHHHHHHHHH---HHHHHHHHHHHhccc-ccccccchhhHHHHHHHHHHHHHHHHHH
Q 044163 273 NSNYMIGAAMFGLVIPAGPPLGSALVEKSELII---THFFLPFFYIRLGQL-TDIHSIESWRSFLALELILVSAYLGKVV 348 (783)
Q Consensus 273 G~~~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~---~~~f~PlFFv~~G~~-~dl~~l~~~~~~~~~~~ii~~~~~~K~~ 348 (783)
++|+..-..++|.++....-..+++.++-..+. ..-+.+..++-+|+. +|++.+.+.-++ -.+++++..+++=.+
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~-~~vviiv~~Vlg~ii 281 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSW-QFVVICLSVVVAMIL 281 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhch-hHhhhHHHHHHHHHH
Confidence 678888889999998876545566666555442 222333334445765 777666221123 245555666778888
Q ss_pred HHHHHHHhcCCChHHHHHH-HHHhhhh-HHHHHHHHhhhcccCccc
Q 044163 349 GCILGLISFKASIRNALLF-SCFLNIK-GIIELMHFLRWRSRKYVD 392 (783)
Q Consensus 349 ~~~l~~~~~~~~~~~~l~l-g~~m~~r-G~~~lii~~i~~~~gii~ 392 (783)
++++.+|+.|+=+-|+... |+.|+.+ |.-++++.+.+.+.++++
T Consensus 282 ~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 282 GGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 9999999999877675555 6577666 445677777777777655
No 85
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=93.57 E-value=1 Score=45.15 Aligned_cols=108 Identities=16% Similarity=0.213 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHhhhcCC-----hHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhh
Q 044163 88 NTLATMGGIYFVFIVTVKMD-----KAMILRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASR 162 (783)
Q Consensus 88 ~~la~iGl~~llF~~Gle~d-----~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~ 162 (783)
+...+..+.+++|.+|+++- ++++++.+++++.+.+..++-+++.+.+++.++... +.+++.++.-+.=
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ll~~~------~~~~lav~sG~Gw 96 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASLLLGLS------LKESLAVASGFGW 96 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHHccCcH
Confidence 66788999999999999883 456677889999999999888888888888777433 3555555543321
Q ss_pred ccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 163 SSFAVVVDAISELKLLNSELGQLTMSTAVIHEILGWLNSILSQ 205 (783)
Q Consensus 163 TS~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill~v~~ 205 (783)
+.....++.|++ +.+.|.++.=+=++.|++++++.-++.
T Consensus 97 --YSlsg~~i~~~~--~~~~G~iafl~n~~RE~~a~~~~P~~~ 135 (191)
T PF03956_consen 97 --YSLSGVLITQLY--GPELGTIAFLSNLFREILAIILIPLLA 135 (191)
T ss_pred --HHhHHHHHHhhh--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222345543 557787777776666666666554443
No 86
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=93.26 E-value=3 Score=40.38 Aligned_cols=120 Identities=14% Similarity=0.057 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHhchh--HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchh-hHHHH
Q 044163 258 IMIGAITLGFIYEGLNSN--YMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESW-RSFLA 334 (783)
Q Consensus 258 vl~~~l~~~~lae~lG~~--~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~-~~~~~ 334 (783)
.+.+....+++.+.+|+. .++|+++++.++.-.....-++-+.+..+ -.-+.=..+|.+++...+... ..+..
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~~~----~qviiG~~iG~~f~~~~l~~~~~~~~~ 78 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLLAL----AQVVIGILIGSRFTREVLAELKRLWPA 78 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHHHH----HHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 344556667777888886 78899998888875432222222333322 222344678999998776222 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHhh
Q 044163 335 LELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGIIELMHFLR 384 (783)
Q Consensus 335 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i 384 (783)
.+..++..++.-++.+++..+..++++.+++ + ...|-|.-+......
T Consensus 79 ~l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-L--a~~PGGl~~m~~~A~ 125 (156)
T TIGR03082 79 ALLSTVLLLALSALLAWLLARLTGVDPLTAF-L--ATSPGGASEMAALAA 125 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-H--HhCCchHHHHHHHHH
Confidence 4555555666678888888999999998886 3 368888877776554
No 87
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=92.79 E-value=20 Score=40.31 Aligned_cols=109 Identities=9% Similarity=0.024 Sum_probs=62.2
Q ss_pred chhHHHHHHHHHHhcCCCCCch--hHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHH-HHHHH
Q 044163 273 NSNYMIGAAMFGLVIPAGPPLG--SALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYL-GKVVG 349 (783)
Q Consensus 273 G~~~~lGaF~aGl~l~~~~~~~--~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~-~K~~~ 349 (783)
.+....+|++.|+++.+..+.. .++.++.-+...++.+-+|.+..=|.+++..+ . +.+...+++++..++ .=+..
T Consensus 244 ~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l-~-~~a~Plliil~~q~i~~~l~~ 321 (398)
T TIGR00210 244 MLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWEL-A-DLAGPIALILLVQVMFMALYA 321 (398)
T ss_pred CCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHH-H-HHHHHHHHHHHHHHHHHHHHH
Confidence 3667899999999998852211 12222333334677777788888888999887 3 233333333333333 33345
Q ss_pred HHHHHHhcCCChHHHHHHHHHhhh--hHHHHHHHHhh
Q 044163 350 CILGLISFKASIRNALLFSCFLNI--KGIIELMHFLR 384 (783)
Q Consensus 350 ~~l~~~~~~~~~~~~l~lg~~m~~--rG~~~lii~~i 384 (783)
.++..|..|-+ .|+-.+..+..- -|...-+++++
T Consensus 322 ~fv~fr~mg~~-ydaaV~~ag~~G~~lGatptaianm 357 (398)
T TIGR00210 322 IFVTFRLMGKD-YDAAVLCAGHCGFGLGATPTAIANM 357 (398)
T ss_pred HHHhHHhccch-HHHHHHhcccccccccchHHHHHHH
Confidence 56667777766 777664333322 24444444443
No 88
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=92.38 E-value=1.7 Score=50.89 Aligned_cols=118 Identities=18% Similarity=0.223 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCch-hHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHH
Q 044163 257 AIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPLG-SALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLAL 335 (783)
Q Consensus 257 ~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~~-~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~ 335 (783)
..++.+.+...+++.+++++.++-.++|+++...+... -.+... +...+++|......|+++|...+ . ..+..+
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~---~~~~~~Lp~lLF~~g~~~~~~~l-~-~~~~~i 79 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDRE---IVLFLFLPPLLFEAAMNTDLREL-R-ENFRPI 79 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHH---HHHHHHHHHHHHHHHhcCCHHHH-H-HHHHHH
Confidence 34444455566777788888888888888876431111 011111 12357888888899999999888 2 223222
Q ss_pred HHHHHHHH-HHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHH
Q 044163 336 ELILVSAY-LGKVVGCILGLISFKASIRNALLFSCFLNIKGIIEL 379 (783)
Q Consensus 336 ~~ii~~~~-~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~l 379 (783)
..+.+... +.-.+.++......++|+..++.+|..+++-..+..
T Consensus 80 ~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav 124 (525)
T TIGR00831 80 ALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAV 124 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHH
Confidence 22222222 222333333333678999999999999999876553
No 89
>TIGR00930 2a30 K-Cl cotransporter.
Probab=92.27 E-value=40 Score=42.51 Aligned_cols=99 Identities=5% Similarity=-0.026 Sum_probs=63.6
Q ss_pred CCceeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHHHHhhc
Q 044163 443 SSELRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSRS 522 (783)
Q Consensus 443 ~~elrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 522 (783)
+=..++|+.+.+|+.-+.|++++..+.+.+ .-..+.|+++-+.+.. ..+.++..+..+.+-+.
T Consensus 573 nwrPqiLvl~~~p~~~~~Ll~f~~~l~~~~---gl~i~~~v~~~~~~~~--------------~~~~~~~~~~~~~~~~~ 635 (953)
T TIGR00930 573 NWRPQCLVLTGPPVCRPALLDFASQFTKGK---GLMICGSVIQGPRLEC--------------VKEAQAAEAKIQTWLEK 635 (953)
T ss_pred ccCCeEEEEeCCCcCcHHHHHHHHHhccCC---cEEEEEEEecCchhhh--------------HHHHHHHHHHHHHHHHH
Confidence 334679999999999999999999998543 2455668877432111 01112222222222221
Q ss_pred CCCCeEEEEEEEEcCCCChHHHHHHHHHhc-----CCCEEEEccc
Q 044163 523 SGPAVAVQPFIMISPYDTMHQSICRLLKDK-----FIPLILVPLF 562 (783)
Q Consensus 523 ~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~-----~a~lIIlp~h 562 (783)
-.++.|..+-...++.+++.++.+-. +.+.+++||.
T Consensus 636 ----~~~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~ 676 (953)
T TIGR00930 636 ----NKVKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYK 676 (953)
T ss_pred ----hCCCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCc
Confidence 12344444444579999999999876 6799999997
No 90
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=91.81 E-value=0.81 Score=54.43 Aligned_cols=120 Identities=12% Similarity=0.098 Sum_probs=80.2
Q ss_pred CCceeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHHHHhhc
Q 044163 443 SSELRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSRS 522 (783)
Q Consensus 443 ~~elrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~ 522 (783)
....|||||++.......+++-+..++..- ....+++|+..-..+..+ ..+.+++.+.++ .+++
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~~--~a~~~av~v~~~~~~~~~-------------~~~~~~l~~~~~-Lae~ 309 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASRL--HAKWTAVYVETPELHRLS-------------EKEARRLHENLR-LAEE 309 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHHh--CCCeEEEEEecccccccc-------------HHHHHHHHHHHH-HHHH
Confidence 456899999999999999999988888764 355888997442211111 122334444333 3333
Q ss_pred CCCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCC
Q 044163 523 SGPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAP 586 (783)
Q Consensus 523 ~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~Ap 586 (783)
..++ ..+..+ .++.+.|.+.|++.+++-||+|-++..++. ....+++.+++++.+|
T Consensus 310 lGae----~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~--~~~~~~l~~~L~~~~~ 365 (890)
T COG2205 310 LGAE----IVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWR--RLFKGSLADRLAREAP 365 (890)
T ss_pred hCCe----EEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHH--HHhcccHHHHHHhcCC
Confidence 3232 223333 799999999999999999999976333321 1234788999999988
No 91
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=90.35 E-value=3.7 Score=44.57 Aligned_cols=114 Identities=13% Similarity=0.100 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHhccccccccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHH
Q 044163 304 IITHFFLPFFYIRLGQLTDIHSI-ESWRSFLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGIIELMHF 382 (783)
Q Consensus 304 ~~~~~f~PlFFv~~G~~~dl~~l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~ 382 (783)
+.++++=|+-|.-+|..+|+..+ .++....+ .-..+=+| +..+++.+...|++.+|+-.+|.+=..-|-.++.++
T Consensus 102 i~~gl~P~LIFlGIGAMtDFgpllanP~~~ll---~gaaAQ~G-iF~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~s 177 (399)
T TIGR03136 102 FSNSLVACILFFGIGAMSDISFILARPWASIT---VALFAEMG-TFATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFAS 177 (399)
T ss_pred HhcccHHHHHHHhccHHhcchHHHhChHHHHH---HHHHHHhh-HHHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHHH
Confidence 35688889999999999999887 33332211 11222233 234445566779999999999998888888888776
Q ss_pred hhhcccCccchhhHHHHHHHHHHHHHhHHHHHHHhccccch
Q 044163 383 LRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIFYKPQRR 423 (783)
Q Consensus 383 ~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l~~~~~~ 423 (783)
+.-. -+++.+-.-.+-.-|+++ =.+-||++|.+-..++|
T Consensus 178 ~kLA-p~Llg~IaVAAYsYMaLV-PiiqPpimklLttkkER 216 (399)
T TIGR03136 178 LILA-KDLFVPISIIAYLYLSLT-YAGYPYLIKLLVPKKYR 216 (399)
T ss_pred Hhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhhcCHHHH
Confidence 6422 122222222222223444 56789999998754444
No 92
>PRK10490 sensor protein KdpD; Provisional
Probab=90.32 E-value=2 Score=53.76 Aligned_cols=123 Identities=11% Similarity=0.101 Sum_probs=80.4
Q ss_pred cccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCccccc-chhhhhHHHHHHHHHhhcCCCCCEEEEEEEec
Q 044163 609 FCYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVEN-ESEKHIDEVVMNEFVASNFGNASVVCRQIVAN 687 (783)
Q Consensus 609 ~~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~-~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~ 687 (783)
...||+|..-|+|+.+..++.|+|||+..++.+++++|-.+.....+ +.++.+. +.++ +.++.. .. +.. +.
T Consensus 249 ~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~-~~~~-lA~~lG--a~--~~~--~~ 320 (895)
T PRK10490 249 TRDAILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAIL-SALR-LAQELG--AE--TAT--LS 320 (895)
T ss_pred cCCeEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHH-HHHH-HHHHcC--CE--EEE--Ee
Confidence 35789999999999999999999999999999999998755321111 1111221 1222 333332 22 222 22
Q ss_pred ChHHHHHHHHhhc--cCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEEee
Q 044163 688 DTKQLVSAVRSLE--RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVIQS 755 (783)
Q Consensus 688 ~~~e~~~~i~~~~--~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVvqq 755 (783)
+.|+.+.|-+.+ .+-+-+|+|++++. .| --.|.+.|.|.+. ..+--|.||..
T Consensus 321 -~~dva~~i~~~A~~~~vt~IViG~s~~~---------~~---~~~~s~~~~l~r~---~~~idi~iv~~ 374 (895)
T PRK10490 321 -DPAEEKAVLRYAREHNLGKIIIGRRASR---------RW---WRRESFADRLARL---GPDLDLVIVAL 374 (895)
T ss_pred -CCCHHHHHHHHHHHhCCCEEEECCCCCC---------CC---ccCCCHHHHHHHh---CCCCCEEEEeC
Confidence 345666666554 55788999999764 24 1257899999995 34668888853
No 93
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=90.32 E-value=32 Score=37.73 Aligned_cols=156 Identities=12% Similarity=0.073 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHhchh--HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccch-hhH
Q 044163 255 IIAIMIGAITLGFIYEGLNSN--YMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIES-WRS 331 (783)
Q Consensus 255 ~~~vl~~~l~~~~lae~lG~~--~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~-~~~ 331 (783)
+.+.+...++.+.+...+++. ..+|+++.|..+.-.....-++.+-+..+. .-+.=..+|.++|-..+.. ...
T Consensus 190 ~~~l~~~~~~~g~l~~~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl~~va----~~~iG~~IG~~f~~~~l~~~~r~ 265 (352)
T COG3180 190 LLLLILAALLGGLLGKLLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWLLAVA----QALIGALIGSRFDRSILREAKRL 265 (352)
T ss_pred HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhhcccceeeeCCHHHHHHH----HHHHHHHHcccccHHHHHHhHhh
Confidence 444555555666666666665 578888988888876422223322222222 2234467899998766511 112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccchhhHHHHHHHHHHHHHhHH
Q 044163 332 FLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDIQTFSELVLSNLVLTAIVT 411 (783)
Q Consensus 332 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~~~f~~lv~~~vl~t~i~~ 411 (783)
....++.++..++.-...+++..++.+.++.++.. ..+|-|.-+++....+.+...---..++++ =.++...+.|
T Consensus 266 ~~~~~v~ii~l~~~~~~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~ad~a~V~a~q~l--Rll~il~i~p 340 (352)
T COG3180 266 LPAILVSIIALMAIAAGMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALGADPAFVMALQVL--RLLFILLLGP 340 (352)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcCCChHHHHHHHHH--HHHHHHHHHH
Confidence 22234444445556677777888999999988763 368888888877665544221100111221 1222234457
Q ss_pred HHHHHhcc
Q 044163 412 PLIAIFYK 419 (783)
Q Consensus 412 pl~~~l~~ 419 (783)
++.|++.+
T Consensus 341 ~l~r~l~~ 348 (352)
T COG3180 341 ALARFLSK 348 (352)
T ss_pred HHHHHHHH
Confidence 77777654
No 94
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=90.20 E-value=2.5 Score=45.29 Aligned_cols=112 Identities=16% Similarity=0.300 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHhccccccccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHh
Q 044163 305 ITHFFLPFFYIRLGQLTDIHSI-ESWRSFLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGIIELMHFL 383 (783)
Q Consensus 305 ~~~~f~PlFFv~~G~~~dl~~l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~ 383 (783)
.++++=|+-|.-+|..+|+..+ .++... ++-..+=+| +..+++.+...|++.+|+..+|.+=..-|-.++.+++
T Consensus 67 ~~~l~P~LIF~GIGAmtDFgpllanP~~~----llGaaAQ~G-if~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~ 141 (360)
T PF03977_consen 67 SNGLFPPLIFMGIGAMTDFGPLLANPKTL----LLGAAAQFG-IFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSS 141 (360)
T ss_pred hcchhhHHHHHHHhHHHhhHHHHhCHHHH----HHHHHHHHh-HHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHH
Confidence 3678888999999999999887 333221 122222233 3445566777799999999999988888888887766
Q ss_pred hhcccCccchhhHHHHHHHHHHHHHhHHHHHHHhccccch
Q 044163 384 RWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIFYKPQRR 423 (783)
Q Consensus 384 i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l~~~~~~ 423 (783)
.-. -.++.+-.-.+-.-|+++ =.+-||+.|.+-.+++|
T Consensus 142 ~LA-p~LlgpIaVaAYsYMaLv-PiiqPpimklLttkkeR 179 (360)
T PF03977_consen 142 KLA-PHLLGPIAVAAYSYMALV-PIIQPPIMKLLTTKKER 179 (360)
T ss_pred hhh-HHHHHHHHHHHHHHHHHH-hhhhhHHHHHhcCHHHH
Confidence 432 122222222222223444 56789999998755444
No 95
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=89.80 E-value=2.5 Score=46.98 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHhcccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH-Hhh-hhHHHHHHHH
Q 044163 306 THFFLPFFYIRLGQLTDIHSIE-SWRSFLALELILVSAYLGKVVGCILGLISFKASIRNALLFSC-FLN-IKGIIELMHF 382 (783)
Q Consensus 306 ~~~f~PlFFv~~G~~~dl~~l~-~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~-~m~-~rG~~~lii~ 382 (783)
.++|+-.||..+|+..++..+. ..........+.........+.....+.+++.++.-.+..|. .+. -.|. +.+..
T Consensus 66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGT-Aaa~g 144 (368)
T PF03616_consen 66 QDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGT-AAAFG 144 (368)
T ss_pred HHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccH-HHHHH
Confidence 4567778999999999988772 222222222222223345555556667778888766654432 221 2233 23333
Q ss_pred hhhccc-CccchhhHHH--HHHHHHHHHHhHHHHHHHhccc
Q 044163 383 LRWRSR-KYVDIQTFSE--LVLSNLVLTAIVTPLIAIFYKP 420 (783)
Q Consensus 383 ~i~~~~-gii~~~~f~~--lv~~~vl~t~i~~pl~~~l~~~ 420 (783)
....+. |+-+...... -.+-.+...++..|+.+++.|.
T Consensus 145 ~~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk 185 (368)
T PF03616_consen 145 PTFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRK 185 (368)
T ss_pred HHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333344 6544433322 2223344467788999988753
No 96
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=88.14 E-value=32 Score=35.49 Aligned_cols=110 Identities=8% Similarity=0.028 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhh
Q 044163 295 SALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIK 374 (783)
Q Consensus 295 ~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~r 374 (783)
+-+..-+.+-+-.+-+|+| -+.+.+ . +.|..++.-+++..+.-++++++.++++|.+..- -..|.||
T Consensus 65 ~~l~~lLgPAtVALAvPLY-------~q~~~l-k-~~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~~----~~Sl~pK 131 (232)
T PRK04288 65 DIISFFLEPATIAFAIPLY-------KKRDVL-K-KYWWQILGGIVVGSVCSVLIIYLVAKLIQLDNAV----MASMLPQ 131 (232)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HhHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH----HHHHhhH
Confidence 3445555666666777776 234444 2 3454455555556666778888889999987632 2347999
Q ss_pred HHHHHHHHhhhcccCccchhhHHHHHHHHHHHHHhHHHHHHHh
Q 044163 375 GIIELMHFLRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIF 417 (783)
Q Consensus 375 G~~~lii~~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l 417 (783)
....=+...+..+.|-+.+-+-...+++-++-..+.+++++++
T Consensus 132 SVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 132 AATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred hhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9998888888888887766565556666666666677777764
No 97
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=87.59 E-value=12 Score=36.83 Aligned_cols=85 Identities=16% Similarity=0.174 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcCChHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH-
Q 044163 83 EMLVVNTLATMGGIYFVFIVTVKMDKAMI---LRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISF- 158 (783)
Q Consensus 83 ~~~~l~~la~iGl~~llF~~Gle~d~~~l---~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~- 158 (783)
.....+.+.++|+.++++.+|++--++.+ ++.+.+...+++.-.++|.++++.+++++.+. ......|.
T Consensus 48 ~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l-------~~~~~~G~~ 120 (169)
T PF06826_consen 48 PISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGRYLFKL-------NPGIAAGIL 120 (169)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------CHHHHHHHH
Confidence 34566789999999999999999876554 55666777777777777888888877744333 22333443
Q ss_pred HHhhccHHHHHHHHHh
Q 044163 159 LASRSSFAVVVDAISE 174 (783)
Q Consensus 159 ~ls~TS~~Vv~~iL~e 174 (783)
+=+.|++|.+....+.
T Consensus 121 aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 121 AGALTSTPALAAAQEA 136 (169)
T ss_pred HccccCcHHHHHHHHh
Confidence 3456888887766655
No 98
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=87.53 E-value=35 Score=34.93 Aligned_cols=111 Identities=13% Similarity=0.050 Sum_probs=77.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhh
Q 044163 294 GSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNI 373 (783)
Q Consensus 294 ~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~ 373 (783)
++.+..-+++-+-.+-+|+| =+.+.+ ...|..+..-++++.+.-++.+++.++++|.+..-. ..+.|
T Consensus 61 ~~~i~~lLgPAtVAlAvPLY-------kq~~~i--k~~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~~~----~Sl~P 127 (230)
T COG1346 61 GQWINFLLGPATVALAVPLY-------KQRHLI--KRHWKPILAGVLVGSVVAIISGVLLAKLFGLSPELI----LSLLP 127 (230)
T ss_pred cHHHHHHHHHHHHHHhhHHH-------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH----HHhcc
Confidence 34566666766667778876 233444 235655555666666677888888899999886433 34789
Q ss_pred hHHHHHHHHhhhcccCccchhhHHHHHHHHHHHHHhHHHHHHHh
Q 044163 374 KGIIELMHFLRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIF 417 (783)
Q Consensus 374 rG~~~lii~~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l 417 (783)
|....-+...+..+.|-+++-+-..++++-++-+.+.+++++.+
T Consensus 128 kSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 128 KSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred cccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999888888889888887666666666677666677777764
No 99
>PRK03818 putative transporter; Validated
Probab=87.30 E-value=6.9 Score=46.02 Aligned_cols=84 Identities=6% Similarity=0.150 Sum_probs=56.0
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCChHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH-H
Q 044163 84 MLVVNTLATMGGIYFVFIVTVKMDKAMI---LRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISF-L 159 (783)
Q Consensus 84 ~~~l~~la~iGl~~llF~~Gle~d~~~l---~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~-~ 159 (783)
.....++.++|+.+|+|.+|++--++.+ ++.+.+...+++.-.++|.++++++.+++... .....|+ +
T Consensus 56 ~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~G~~a 127 (552)
T PRK03818 56 SDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIP--------LPVMLGIFS 127 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHhh
Confidence 4566779999999999999999987666 44455666666666666777766665444322 2333443 3
Q ss_pred HhhccHHHHHHHHHhc
Q 044163 160 ASRSSFAVVVDAISEL 175 (783)
Q Consensus 160 ls~TS~~Vv~~iL~el 175 (783)
=+.|++|.+....+..
T Consensus 128 Ga~T~tp~l~aa~~~~ 143 (552)
T PRK03818 128 GAVTNTPALGAGQQIL 143 (552)
T ss_pred ccccccHHHHHHHHHH
Confidence 4568888876665433
No 100
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=85.72 E-value=50 Score=37.20 Aligned_cols=114 Identities=11% Similarity=0.025 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcccccccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHH-HHh-hhhHHHHHHHH
Q 044163 306 THFFLPFFYIRLGQLTDIHSIES-WRSFLALELILVSAYLGKVVGCILGLISFKASIRNALLFS-CFL-NIKGIIELMHF 382 (783)
Q Consensus 306 ~~~f~PlFFv~~G~~~dl~~l~~-~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg-~~m-~~rG~~~lii~ 382 (783)
.++|+-+||..+|+..++..++. .........+.....+...+.....+..+|+++.-++..| ..| .-.|.....--
T Consensus 66 ~~~lm~~fFatigLga~~~~l~~gg~~l~~~~~~~~~l~~~Qn~vGv~la~~~gl~P~~Gll~gsi~~~GGHGTAaA~g~ 145 (398)
T TIGR00210 66 RDPLMLIFFTTIGLSANFKSLLKGGKPLLIFLATAVGFLVIQNAVGIGMASLLGQAPLMGLLAGSITLSGGHGTGAAWSP 145 (398)
T ss_pred HHHHHHHHHHHhhhcCChHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHhhCccCCCCCcHHHHHHH
Confidence 36788899999999999887722 1222222333333455677766777788899988776643 222 22333332222
Q ss_pred hhhcccCccchhhH--HHHHHHHHHHHHhHHHHHHHhcc
Q 044163 383 LRWRSRKYVDIQTF--SELVLSNLVLTAIVTPLIAIFYK 419 (783)
Q Consensus 383 ~i~~~~gii~~~~f--~~lv~~~vl~t~i~~pl~~~l~~ 419 (783)
....+.|+-+.... +.-.+-.+..+++..|+.+++.|
T Consensus 146 ~f~e~~G~~~a~~lgla~AT~GLv~g~liGgpi~~~lir 184 (398)
T TIGR00210 146 VFYDNYGFRNATEIAIACATFGLVFGGIIGGPVAKFLII 184 (398)
T ss_pred HHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223565544332 22333445556778899998764
No 101
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=85.32 E-value=2.4 Score=36.12 Aligned_cols=48 Identities=10% Similarity=0.012 Sum_probs=36.4
Q ss_pred ChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchh-HHHHHHhccCCCce
Q 044163 540 TMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLH-NFNINILHYAPCTV 589 (783)
Q Consensus 540 ~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~-~~~~~Vl~~ApCsV 589 (783)
.+.+.+.+.|++.+++.|+.|.|.+...+ ....+ +....+.+.++|+|
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~--~~~~~~~~~~~~~~~~~~~v 83 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAG--RRLGASANVLVVIKGAGIPV 83 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhh--hccCchhhhhhcccccCCce
Confidence 78889999999999999999999433322 23334 56678889988885
No 102
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=85.25 E-value=4.6 Score=40.50 Aligned_cols=103 Identities=14% Similarity=0.179 Sum_probs=61.6
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 278 IGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIE--SWRSFLALELILVSAYLGKVVGCILGLI 355 (783)
Q Consensus 278 lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~--~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 355 (783)
++++++|+++....+......++.... .+.+-+|++-+.+.-|-..+. ....+ -.+.+-+..+++-++++++.++
T Consensus 2 l~~li~Gi~lG~~~~~~~~~~~~~~~~--~L~lLLF~VGi~lG~~~~~l~~l~~~g~-~~Llipl~tIlGSllgg~l~~~ 78 (191)
T PF03956_consen 2 LIALILGILLGYFLRPPFSLIDKISTY--ALYLLLFLVGIDLGSNREILRQLRSLGK-RALLIPLATILGSLLGGLLASL 78 (191)
T ss_pred eeeHHHHHHHHHHhcccccccccHHHH--HHHHHHHHHHHHhcCCHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666655422121222333332 344445555444444422221 10122 2455666777899999999999
Q ss_pred hcCCChHHHHHHHHHhhhhHHHHHHHHh
Q 044163 356 SFKASIRNALLFSCFLNIKGIIELMHFL 383 (783)
Q Consensus 356 ~~~~~~~~~l~lg~~m~~rG~~~lii~~ 383 (783)
+.+++++|++.++.++.=-...+..+..
T Consensus 79 ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 79 LLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 9999999999999887777666666655
No 103
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=83.19 E-value=13 Score=40.53 Aligned_cols=131 Identities=10% Similarity=0.162 Sum_probs=76.3
Q ss_pred CchhHHHh-hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHHHHHHHH-HH
Q 044163 51 VLPVVMIQ-SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWNVSMTVL-LV 128 (783)
Q Consensus 51 ~lP~l~~~-aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~-li 128 (783)
+-|.+.+. +|+++...... . |.--.+.++.+++...-+-||..|+.++.+.+++..+........-. +.
T Consensus 181 ~nP~iia~i~Gl~~~~~~i~-l--------P~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~~~~~~~~~~klil~ 251 (321)
T TIGR00946 181 KFPPLWAPLLSVILSLVGFK-M--------PGLILKSISILSGATTPMALFSLGLALSPRKIKLGVRDAILALIVRFLVQ 251 (321)
T ss_pred hCCChHHHHHHHHHHHHhhc-C--------cHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccChHHHHHHHHHHHHHH
Confidence 55666665 88877654332 2 33457889999999999999999999999888766666655545544 44
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHhhccHHHHHHHHHh-ccccCChhHHHHHHHHHHHHHHHHHHHH
Q 044163 129 PLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSSFAVVVDAISE-LKLLNSELGQLTMSTAVIHEILGWLNSI 202 (783)
Q Consensus 129 p~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~e-l~ll~s~~g~l~ls~aii~Di~~~ill~ 202 (783)
|.+. +.++..+... ....-...+.+...+++...++.+ +| .+. +.+-+...++-+++++.+.
T Consensus 252 P~i~-~~~~~~~~l~-------~~~~~~~vl~aa~P~a~~~~i~A~~y~-~~~---~~aa~~v~~sT~ls~~tlp 314 (321)
T TIGR00946 252 PAVM-AGISKLIGLR-------GLELSVAILQAALPGGAVAAVLATEYE-VDV---ELASTAVTLSTVLSLISLP 314 (321)
T ss_pred HHHH-HHHHHHhCCC-------hHHHHHHHHHHcCChhhHHHHHHHHhC-CCH---HHHHHHHHHHHHHHHHHHH
Confidence 5543 4444444321 122334445555555555555544 44 232 3344444444444444433
No 104
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=82.84 E-value=12 Score=44.20 Aligned_cols=85 Identities=13% Similarity=0.195 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCChHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH-H
Q 044163 84 MLVVNTLATMGGIYFVFIVTVKMDKAMI---LRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISF-L 159 (783)
Q Consensus 84 ~~~l~~la~iGl~~llF~~Gle~d~~~l---~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~-~ 159 (783)
.....++.++|+.+|++.+|++--.+.+ ++.+.+...+|.+-.++|.++++.+++++.+. ......|. +
T Consensus 443 ~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~-------~~~~~~G~~a 515 (562)
T TIGR03802 443 SSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIVVTILPLIITMLIGKYVLKY-------DPALLLGALA 515 (562)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHhh
Confidence 4456678999999999999999876554 55566666777777777878887877544433 22344554 4
Q ss_pred HhhccHHHHHHHHHhc
Q 044163 160 ASRSSFAVVVDAISEL 175 (783)
Q Consensus 160 ls~TS~~Vv~~iL~el 175 (783)
=+.|++|.+....+..
T Consensus 516 G~~t~t~~l~~a~~~~ 531 (562)
T TIGR03802 516 GARTATPALGAVLERA 531 (562)
T ss_pred ccCCCcHHHHHHHHhc
Confidence 5678888887766544
No 105
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=82.31 E-value=6.1 Score=41.57 Aligned_cols=107 Identities=10% Similarity=0.057 Sum_probs=60.6
Q ss_pred eccCCccHHHHHHHHHHHhcCCC-eEEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEE-EEe--cChHH
Q 044163 616 FFIGGPDDREAMALVSRMSGHPG-VSITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQ-IVA--NDTKQ 691 (783)
Q Consensus 616 ~f~GG~ddreAL~~a~rma~~~~-~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e-~~v--~~~~e 691 (783)
++.=.|.|+-|++.|.|+.++.+ .++|++.+.+++. .+++.+++-...- -++....+ ... .|...
T Consensus 31 ~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a---------~~~~~lr~aLAmG--aD~avli~d~~~~g~D~~~ 99 (256)
T PRK03359 31 DAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKAL---------TNAKGRKDVLSRG--PDELIVVIDDQFEQALPQQ 99 (256)
T ss_pred ccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcch---------hhHHHHHHHHHcC--CCEEEEEecCcccCcCHHH
Confidence 33336889999999999999764 8999999876521 1123344333322 22322221 101 13333
Q ss_pred HHHHHHhh--ccCCcEEEEcccCCC-----CchhhhccCCCCCCCccchhhh
Q 044163 692 LVSAVRSL--ERSNDLVIVGRQQAF-----SSQLEEEMRPWVEYEELGIIGD 736 (783)
Q Consensus 692 ~~~~i~~~--~~~~DLvIVG~~~~~-----~s~~~~gl~~W~e~~eLG~igd 736 (783)
|..+|... ..+||||+.|++.-. ..+++.++.+| |.+..+-+
T Consensus 100 tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~---P~vt~v~~ 148 (256)
T PRK03359 100 TASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNI---PAINGVSK 148 (256)
T ss_pred HHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHHHHhCC---CceeeEEE
Confidence 44443332 135999999998622 34666667676 44444443
No 106
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=82.14 E-value=15 Score=35.46 Aligned_cols=86 Identities=10% Similarity=0.113 Sum_probs=53.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH-
Q 044163 84 MLVVNTLATMGGIYFVFIVTVKMDKAMILRTVK----KTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISF- 158 (783)
Q Consensus 84 ~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~----~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~- 158 (783)
......+.++|+.++++.+|++--.+.+..-.+ ....++..-.++|.+++..++.++.+. ......|.
T Consensus 49 ~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~~-------~~~~~~G~~ 121 (154)
T TIGR01625 49 FSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVAVALIKLLRI-------NYALTAGML 121 (154)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CHHHHHHHH
Confidence 346778899999999999999988766643322 233344444455555555555444333 22344444
Q ss_pred HHhhccHHHHHHHHHhcc
Q 044163 159 LASRSSFAVVVDAISELK 176 (783)
Q Consensus 159 ~ls~TS~~Vv~~iL~el~ 176 (783)
+=+.|++|.+....+..+
T Consensus 122 aGa~T~tpaL~aa~~~~~ 139 (154)
T TIGR01625 122 AGATTNTPALDAANDTLR 139 (154)
T ss_pred hccccChHHHHHHHHHhc
Confidence 346788888877665443
No 107
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=81.27 E-value=0.7 Score=48.08 Aligned_cols=114 Identities=13% Similarity=0.232 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhccccccccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHh
Q 044163 305 ITHFFLPFFYIRLGQLTDIHSI-ESWRSFLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGIIELMHFL 383 (783)
Q Consensus 305 ~~~~f~PlFFv~~G~~~dl~~l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~ 383 (783)
.++++=++-|.-+|..+|+..+ .++.++.+. ..+-+| +..+++.+...|+..+|+..+|.+=..-|-.++.+.+
T Consensus 82 ~~~i~PllIFmGvGAmTDFgpllanPktllLG----aAAQ~G-IF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~ 156 (375)
T COG1883 82 GSGIFPLLIFMGVGAMTDFGPLLANPKTLLLG----AAAQFG-IFATVFGALALGFTPKEAASIGIIGGADGPTAIYLTN 156 (375)
T ss_pred ccCcccHHHHhccchhcccchhhcCcHHHHhh----hHHHhc-hHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEecc
Confidence 4577888889999999999887 444443321 112222 2334455667789999999999877777776665544
Q ss_pred hhcccCccchhhHHHHHHHHHHHHHhHHHHHHHhccccchhh
Q 044163 384 RWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIFYKPQRRLE 425 (783)
Q Consensus 384 i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l~~~~~~~~ 425 (783)
.- .-.++..-...+---|+++ -++-||+.|.+-.+++|-+
T Consensus 157 ~L-AP~Ll~~iAvAAYSYMALV-PiIQPpimkaLTt~~ERkI 196 (375)
T COG1883 157 KL-APELLGAIAVAAYSYMALV-PIIQPPIMKALTTKEERKI 196 (375)
T ss_pred cc-CHHHHHHHHHHHHHHHHHh-hhcccHHHHHhcCHHHHHh
Confidence 21 1111221111222223444 6778999999886665543
No 108
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=80.99 E-value=4.7 Score=43.14 Aligned_cols=113 Identities=16% Similarity=0.260 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHhccccccccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------ChHHHHHHHHHhhhhHH
Q 044163 304 IITHFFLPFFYIRLGQLTDIHSI-ESWRSFLALELILVSAYLGKVVGCILGLISFKA------SIRNALLFSCFLNIKGI 376 (783)
Q Consensus 304 ~~~~~f~PlFFv~~G~~~dl~~l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~------~~~~~l~lg~~m~~rG~ 376 (783)
+.+++|=|+-|.-+|..+|+..+ .++... ++-..+=+| +..+++.+...|+ +.+|+-.+|.+=..-|-
T Consensus 60 i~~~l~P~LIFlGIGAmtDFgpllanP~~~----llGaaAQ~G-iF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGP 134 (354)
T TIGR01109 60 IGSGIAPLLIFMGIGALTDFGPLLANPRTL----LLGAAAQFG-IFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGP 134 (354)
T ss_pred HhcchHHHHHHHhccHHhhhHHHHhChHHH----HHHHHHHhh-HHHHHHHHHHhCCCcccccChhhceeeeeeccCCCc
Confidence 34688889999999999999887 343322 111222222 2334455566677 77999999988777888
Q ss_pred HHHHHHhhhcccCccchhhHHHHHHHHHHHHHhHHHHHHHhccccch
Q 044163 377 IELMHFLRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIFYKPQRR 423 (783)
Q Consensus 377 ~~lii~~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l~~~~~~ 423 (783)
.++.+++.-. -+++.+-.-.+-.-|+++ =.+-||++|.+-..++|
T Consensus 135 t~If~s~~la-p~Llg~IaVAAYsYMaLv-PiiqPpimklLttkkeR 179 (354)
T TIGR01109 135 TAIYLSGKLA-PELLAAIAVAAYSYMALV-PIIQPPIMKALTSEKER 179 (354)
T ss_pred hhhhhHhhhh-hHHHHHHHHHHHHHHHHH-hcccchHHHhhcChHHh
Confidence 7776665321 112222122222223333 56789999988754444
No 109
>PRK10711 hypothetical protein; Provisional
Probab=80.96 E-value=70 Score=33.10 Aligned_cols=109 Identities=10% Similarity=0.066 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhH
Q 044163 296 ALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKG 375 (783)
Q Consensus 296 ~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG 375 (783)
-+..-+.+-+-.+-+|+| =+...+ . +.|..+++-+++..+.-++.+++.++.+|.+..-. ..|.||.
T Consensus 61 ~l~~lLgPAtVALAvPLY-------~q~~~l-k-~~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~~~----~Sl~pkS 127 (231)
T PRK10711 61 VLNDLLQPAVVALAFPLY-------EQLHQI-R-ARWKSIISICFIGSVVAMVTGTAVALWMGATPEIA----ASILPKS 127 (231)
T ss_pred HHHhhhhHHHHHHHHHHH-------HhHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH----HHHhhhh
Confidence 344445555556667766 233334 2 24444445555566667788888899998875433 3478999
Q ss_pred HHHHHHHhhhcccCccchhhHHHHHHHHHHHHHhHHHHHHHh
Q 044163 376 IIELMHFLRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIF 417 (783)
Q Consensus 376 ~~~lii~~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l 417 (783)
...=+...+..+.|-+.+-+-...+++-++-..+.+++++++
T Consensus 128 VTtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 128 VTTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred hhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 988888888888877665555555555666566667777664
No 110
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=79.65 E-value=42 Score=38.22 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCC-C-CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHH
Q 044163 257 AIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPA-G-PPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLA 334 (783)
Q Consensus 257 ~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~-~-~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~ 334 (783)
+++.+..+++.+++.+....+.-..+.|++... . .+......-.-|.+ ..+++|+-....|+++|...+. ..|..
T Consensus 13 lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~-~~l~l~ilLf~~g~~l~~~~l~--~~~~~ 89 (429)
T COG0025 13 LILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELF-LVLFLAILLFAGGLELDLRELR--RVWRS 89 (429)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHH-HHHHHHHHHHHhHhcCCHHHHH--HhHHH
Confidence 344444455555555555544444444444431 1 11111111111222 2567777777799999999882 23333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCChHHHHHHHHHhhhhHHHHHHH
Q 044163 335 LELILVSAYLGKVVGCILGLISF--KASIRNALLFSCFLNIKGIIELMH 381 (783)
Q Consensus 335 ~~~ii~~~~~~K~~~~~l~~~~~--~~~~~~~l~lg~~m~~rG~~~lii 381 (783)
+..+.....+...++.....++. ++|+..++.+|..++|-.-+.+.-
T Consensus 90 I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~ 138 (429)
T COG0025 90 ILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSP 138 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHH
Confidence 33333344444555555555555 899999999999999876655443
No 111
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=79.54 E-value=9.3 Score=41.07 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 044163 93 MGGIYFVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLIISFLVAHMLR 141 (783)
Q Consensus 93 iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~ 141 (783)
+++.+..|..|..+|++.+.+.+.+.+.+++..+.+.+.+++.+..+++
T Consensus 196 f~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~rllg 244 (312)
T PRK12460 196 LLIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFADRLVG 244 (312)
T ss_pred EeHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3888899999999999999999999999999888888888888887663
No 112
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=79.50 E-value=8 Score=42.62 Aligned_cols=114 Identities=12% Similarity=0.074 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhccccccccc-chhhHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHH-HHHHH
Q 044163 305 ITHFFLPFFYIRLGQLTDIHSI-ESWRSFL-ALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGI-IELMH 381 (783)
Q Consensus 305 ~~~~f~PlFFv~~G~~~dl~~l-~~~~~~~-~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~-~~lii 381 (783)
..+.|+-+||..+|+.-++..+ ....... +......++..-.+++ ...+++.|.++.-++..|-.-..-|. .+.+.
T Consensus 67 l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~ig-i~la~~lgidpl~gllagsIsl~GGHGtaAA~ 145 (404)
T COG0786 67 LQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIG-IGLAKLLGLDPLIGLLAGSISLVGGHGTAAAW 145 (404)
T ss_pred cccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHH-HHHHHHcCccHHHHHHhcceeecCCCchHHHH
Confidence 3678889999999999999887 2222221 1222222233334444 44466778877666655332222222 23444
Q ss_pred HhhhcccCccchhh--HHHHHHHHHHHHHhHHHHHHHhcc
Q 044163 382 FLRWRSRKYVDIQT--FSELVLSNLVLTAIVTPLIAIFYK 419 (783)
Q Consensus 382 ~~i~~~~gii~~~~--f~~lv~~~vl~t~i~~pl~~~l~~ 419 (783)
+....+.|.-+... ...-.+-.+.-.++.+|+.+++.+
T Consensus 146 ~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~ 185 (404)
T COG0786 146 GPTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIK 185 (404)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHH
Confidence 55555666544322 222223333445567899999875
No 113
>PRK12342 hypothetical protein; Provisional
Probab=78.56 E-value=9.3 Score=40.16 Aligned_cols=98 Identities=14% Similarity=0.053 Sum_probs=55.8
Q ss_pred eccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEE-EEe--cChHHH
Q 044163 616 FFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQ-IVA--NDTKQL 692 (783)
Q Consensus 616 ~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e-~~v--~~~~e~ 692 (783)
++.=.|.|+-|++.|.|+. +.+.++|++.+.++.. .+++++.+....- -++....+ ... .|.-.|
T Consensus 30 ~~~iNp~D~~AlE~AlrLk-~~g~~Vtvls~Gp~~a---------~~~~l~r~alamG--aD~avli~d~~~~g~D~~at 97 (254)
T PRK12342 30 EAKISQFDLNAIEAASQLA-TDGDEIAALTVGGSLL---------QNSKVRKDVLSRG--PHSLYLVQDAQLEHALPLDT 97 (254)
T ss_pred CccCChhhHHHHHHHHHHh-hcCCEEEEEEeCCChH---------hHHHHHHHHHHcC--CCEEEEEecCccCCCCHHHH
Confidence 4444689999999999999 5689999999876421 1112334333321 22322111 111 122222
Q ss_pred HHHHHhh--ccCCcEEEEcccCCC-----CchhhhccCCC
Q 044163 693 VSAVRSL--ERSNDLVIVGRQQAF-----SSQLEEEMRPW 725 (783)
Q Consensus 693 ~~~i~~~--~~~~DLvIVG~~~~~-----~s~~~~gl~~W 725 (783)
..+|... ..+||||+.|+.... ..+++.++.+|
T Consensus 98 a~~La~~i~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~ 137 (254)
T PRK12342 98 AKALAAAIEKIGFDLLLFGEGSGDLYAQQVGLLLGELLQL 137 (254)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcccCCCCCHHHHHHHHhCC
Confidence 3333322 125999999998632 24777777777
No 114
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=78.39 E-value=86 Score=32.30 Aligned_cols=108 Identities=10% Similarity=0.082 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHH
Q 044163 297 LVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGI 376 (783)
Q Consensus 297 l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~ 376 (783)
+..-+++-+-.+-+|+| =+.+.+ . ..|..++.-++++.+.-+..+++.++.+|.+..- . ..+.||..
T Consensus 61 l~~lLgPAtVALAvPLY-------~~~~~l-k-~~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~~i--~--~Sl~pkSv 127 (226)
T TIGR00659 61 INDLLGPAVVALAIPLY-------KQLPQI-K-KYWKEIILNVAVGSVIAIISGTLLALLLGLGPEI--I--ASLLPKSV 127 (226)
T ss_pred HHHhhHHHHHHHHHHHH-------HhHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHH--H--HHhhhHHh
Confidence 33444555556666765 233334 2 2344344444455556677778888999987432 2 24789999
Q ss_pred HHHHHHhhhcccCccchhhHHHHHHHHHHHHHhHHHHHHHh
Q 044163 377 IELMHFLRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIF 417 (783)
Q Consensus 377 ~~lii~~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l 417 (783)
..-+...+..+.|-..+-+-...+++-++-..+.+++++++
T Consensus 128 TtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g~~ll~~~ 168 (226)
T TIGR00659 128 TTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFGPMVLRYF 168 (226)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888876655555555556666566667777664
No 115
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=78.21 E-value=3.1 Score=45.13 Aligned_cols=117 Identities=13% Similarity=0.129 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHhccccccccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCChHHHHHHHHHhhhhHHHHHH
Q 044163 304 IITHFFLPFFYIRLGQLTDIHSI-ESWRSFLALELILVSAYLGKVVGCILGLI--SFKASIRNALLFSCFLNIKGIIELM 380 (783)
Q Consensus 304 ~~~~~f~PlFFv~~G~~~dl~~l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~~--~~~~~~~~~l~lg~~m~~rG~~~li 380 (783)
+.++++=|+-|.-+|..+|+..+ .++....+. ...=+.++.-++++..... ..|++.+|+-.+|.+=..-|-.++.
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llG-aAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIf 209 (433)
T PRK15475 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLG-AAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIY 209 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHH-HHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHH
Confidence 34678888999999999999877 444333221 1111111222222221111 1379999999999988888888877
Q ss_pred HHhhhcccCccchhhHHHHHHHHHHHHHhHHHHHHHhccccch
Q 044163 381 HFLRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIFYKPQRR 423 (783)
Q Consensus 381 i~~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l~~~~~~ 423 (783)
+++.-. -+++.+-.-.+-.-|+++ =.+-||+.|.+-..++|
T Consensus 210 vsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER 250 (433)
T PRK15475 210 LSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTETER 250 (433)
T ss_pred hHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHh
Confidence 765422 122222222222223444 56789999987754444
No 116
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=77.86 E-value=12 Score=39.81 Aligned_cols=119 Identities=13% Similarity=0.181 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCC-c--hhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhH
Q 044163 255 IIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGPP-L--GSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRS 331 (783)
Q Consensus 255 ~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~-~--~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~ 331 (783)
...-+.++|+.+.+++.+.++|.+|-.++|.+.....| + .+.+...+..++ .-+....+|+++.+..+...+.
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelG----ViLLmFgvGLhfslkdLLavk~ 86 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELG----VILLMFGVGLHFSLKDLLAVKA 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhh----HHHHHHhcchheeHHHHhhHHH
Confidence 45566778889999999999999999999999975422 2 345666666653 2234456899999877633344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHH
Q 044163 332 FLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGIIEL 379 (783)
Q Consensus 332 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~l 379 (783)
|.+-..+.-+ .+.-..+ +..+...|+++...+..|+.++.-..+-+
T Consensus 87 iAipgAl~qi-a~at~lg-~gL~~~lgws~~~glvfGlaLS~aSTVvl 132 (408)
T COG4651 87 IAIPGALAQI-ALATLLG-MGLSSLLGWSFGTGIVFGLALSVASTVVL 132 (408)
T ss_pred HhcchHHHHH-HHHHHHH-hHHHHHcCCCcccceeeeehhhhHHHHHH
Confidence 4221111111 1111222 23355678888888888888877665443
No 117
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=77.61 E-value=3.2 Score=44.94 Aligned_cols=117 Identities=13% Similarity=0.134 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHhccccccccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCChHHHHHHHHHhhhhHHHHHH
Q 044163 304 IITHFFLPFFYIRLGQLTDIHSI-ESWRSFLALELILVSAYLGKVVGCILGLI--SFKASIRNALLFSCFLNIKGIIELM 380 (783)
Q Consensus 304 ~~~~~f~PlFFv~~G~~~dl~~l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~~--~~~~~~~~~l~lg~~m~~rG~~~li 380 (783)
+.++++=|+-|.-+|..+|+..+ .++....+. ...=+.++.-++++..... ..|++.+|+-.+|.+=..-|-.++.
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llG-aAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIf 209 (433)
T PRK15477 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLG-AAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIY 209 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHH-HHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHH
Confidence 34678888999999999999877 444333211 1111111222222221111 1379999999999988888888877
Q ss_pred HHhhhcccCccchhhHHHHHHHHHHHHHhHHHHHHHhccccch
Q 044163 381 HFLRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIFYKPQRR 423 (783)
Q Consensus 381 i~~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l~~~~~~ 423 (783)
+++.-. -+++.+-.-.+-.-|+++ =.+-||+.|.+-..++|
T Consensus 210 vsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER 250 (433)
T PRK15477 210 LSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTEKER 250 (433)
T ss_pred hHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHh
Confidence 765422 122222222222223444 56789999987754444
No 118
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=77.61 E-value=3.2 Score=44.94 Aligned_cols=117 Identities=13% Similarity=0.134 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhccccccccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCChHHHHHHHHHhhhhHHHHHH
Q 044163 304 IITHFFLPFFYIRLGQLTDIHSI-ESWRSFLALELILVSAYLGKVVGCILGLI--SFKASIRNALLFSCFLNIKGIIELM 380 (783)
Q Consensus 304 ~~~~~f~PlFFv~~G~~~dl~~l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~~--~~~~~~~~~l~lg~~m~~rG~~~li 380 (783)
+.++++=|+-|.-+|..+|+..+ .++....+. ...=+.++.-++++..... ..|++.+|+-.+|.+=..-|-.++.
T Consensus 131 i~~gi~P~LIF~GIGAMtDFgpLlanP~~~llG-aAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIf 209 (433)
T PRK15476 131 IGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLG-AAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIY 209 (433)
T ss_pred HhcchHHHHHHHhccHHhcchHHhhCHHHHHHH-HHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHH
Confidence 34678888999999999999877 444333211 1111111222222221111 1379999999999988888888877
Q ss_pred HHhhhcccCccchhhHHHHHHHHHHHHHhHHHHHHHhccccch
Q 044163 381 HFLRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIFYKPQRR 423 (783)
Q Consensus 381 i~~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l~~~~~~ 423 (783)
+++.-. -+++.+-.-.+-.-|+++ =.+-||+.|.+-..++|
T Consensus 210 vsskLA-P~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER 250 (433)
T PRK15476 210 LSGKLA-PELLGAIAVAAYSYMALV-PLIQPPIMKALTTEKER 250 (433)
T ss_pred hHhhhh-hHhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHh
Confidence 765422 122222222222223444 56789999987754444
No 119
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=76.44 E-value=11 Score=44.64 Aligned_cols=88 Identities=15% Similarity=0.057 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHhcccccccccc--hhhHHHHHHHHHHHHHHHHHHH
Q 044163 275 NYMIGAAMFGLVIPAGP---PLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIE--SWRSFLALELILVSAYLGKVVG 349 (783)
Q Consensus 275 ~~~lGaF~aGl~l~~~~---~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~--~~~~~~~~~~ii~~~~~~K~~~ 349 (783)
....|++++|+++.... |....+.+.-..+.+++.+-+|...+|++.-...+. ....|.+.++-++ ..+.-.+.
T Consensus 416 g~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~G~~~~~~g~~-~~~~~~~~ 494 (562)
T TIGR03802 416 GTGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEMGLTLFLLGIV-VTILPLII 494 (562)
T ss_pred hhhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHH-HHHHHHHH
Confidence 45578889999887752 222224444444457777888888899887765441 1122322222222 22223344
Q ss_pred HHHHH-HhcCCChHH
Q 044163 350 CILGL-ISFKASIRN 363 (783)
Q Consensus 350 ~~l~~-~~~~~~~~~ 363 (783)
+++.+ +++|+++-.
T Consensus 495 ~~~~~~~~~~~~~~~ 509 (562)
T TIGR03802 495 TMLIGKYVLKYDPAL 509 (562)
T ss_pred HHHHHHHHhCCCHHH
Confidence 44445 577887654
No 120
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=76.10 E-value=9.5 Score=32.39 Aligned_cols=33 Identities=21% Similarity=0.398 Sum_probs=27.4
Q ss_pred EEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEe
Q 044163 613 VAVFFIGGPDDREAMALVSRMSGHPGVSITVFRI 646 (783)
Q Consensus 613 I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~ 646 (783)
|++++-||+|+..++.++.+.+ ..+.+++.+++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 5789999999999999999987 44667777774
No 121
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=75.11 E-value=0.73 Score=51.40 Aligned_cols=112 Identities=21% Similarity=0.273 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCch--hHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHH
Q 044163 260 IGAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPLG--SALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALEL 337 (783)
Q Consensus 260 ~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~~--~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ 337 (783)
+.++....+.+.++++..+|-.++|+++.... ++ +.-.+..+.+ ..+.+++.....|.++|...+.. .+.....
T Consensus 6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~-~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~--~~~~~~~ 81 (380)
T PF00999_consen 6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPSG-LGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRR--NWRRALA 81 (380)
T ss_dssp -------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG-------------
T ss_pred ehHHHHHHHHHHhCCCHHHHHHHheeehhhhh-hhhccchhhHHHHH-HHHHHHHHHHHHHHhhccccccc--ccccccc
Confidence 33444555788999999999999999999872 22 1112444554 67778888888999999998822 2222223
Q ss_pred HHHHHHHHHHHH-HHHHHH---hcCCChHHHHHHHHHhhhhH
Q 044163 338 ILVSAYLGKVVG-CILGLI---SFKASIRNALLFSCFLNIKG 375 (783)
Q Consensus 338 ii~~~~~~K~~~-~~l~~~---~~~~~~~~~l~lg~~m~~rG 375 (783)
+.+..++.-++. ++.... ..++++.+++.+|..+++-.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp --------------------------------TTHHHHTT--
T ss_pred cccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 333333333333 333332 46889999999988877553
No 122
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=73.91 E-value=83 Score=34.55 Aligned_cols=126 Identities=12% Similarity=0.057 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHHhchh--HHHH-HHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccch-h
Q 044163 254 YIIAIMIGAITLGFIYEGLNSN--YMIG-AAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIES-W 329 (783)
Q Consensus 254 ~~~~vl~~~l~~~~lae~lG~~--~~lG-aF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~-~ 329 (783)
+....+.+.+..+++.+.+|+. .++| +.++|++..-. ...-.+...+...+ .-+-=+.+|.++..+.+.. .
T Consensus 10 ~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~-~~~l~~P~~l~~~~----q~ilG~~ig~~~t~s~l~~l~ 84 (352)
T COG3180 10 QWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLR-GLTLPLPRGLFKAG----QVILGIMIGASLTPSVLDTLK 84 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-cccccCChHHHHHH----HHHHHHHHhhhcCHHHHHHHH
Confidence 4556666667888888888875 4678 66666665533 11112222222222 2233456788888776622 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccC
Q 044163 330 RSFLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRK 389 (783)
Q Consensus 330 ~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~g 389 (783)
..|...++++++.++.-.+..++..|+.+.|..+++ +..+|-|..+..... .|.|
T Consensus 85 ~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~---~gs~PGgas~m~~iA--~d~g 139 (352)
T COG3180 85 SNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAF---LGSSPGGASAMVSIA--QDYG 139 (352)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhh---HhcCCchHHHHHHHH--HHhC
Confidence 346666777777777888888998998878877775 346788877766544 4444
No 123
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=73.69 E-value=19 Score=43.49 Aligned_cols=124 Identities=14% Similarity=0.219 Sum_probs=78.9
Q ss_pred ccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchh-hhhHHHHHHHHHhhcCCCCCEEEEEEEecC
Q 044163 610 CYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVENESE-KHIDEVVMNEFVASNFGNASVVCRQIVAND 688 (783)
Q Consensus 610 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~-~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~ 688 (783)
..||+|-.-|+|....-++.|.|||+..++..|++++..++.....+.+ +.++ +.++ ..+... ..+ +++.
T Consensus 248 ~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~~~~~~~~~l~-~~~~-Lae~lG--ae~----~~l~- 318 (890)
T COG2205 248 RERILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHRLSEKEARRLH-ENLR-LAEELG--AEI----VTLY- 318 (890)
T ss_pred cceEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEeccccccccHHHHHHHH-HHHH-HHHHhC--CeE----EEEe-
Confidence 4799999999999999999999999999999999998765432221122 2222 2222 223321 121 2243
Q ss_pred hHHHHHHHHhhc--cCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEEee
Q 044163 689 TKQLVSAVRSLE--RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVIQS 755 (783)
Q Consensus 689 ~~e~~~~i~~~~--~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVvqq 755 (783)
+.++...|-+-+ .+.--+|+|++++.. |-+. -.|.+.|.|.+. ...-.|-++..
T Consensus 319 ~~dv~~~i~~ya~~~~~TkiViG~~~~~r---------w~~~-~~~~l~~~L~~~---~~~idv~ii~~ 374 (890)
T COG2205 319 GGDVAKAIARYAREHNATKIVIGRSRRSR---------WRRL-FKGSLADRLARE---APGIDVHIVAL 374 (890)
T ss_pred CCcHHHHHHHHHHHcCCeeEEeCCCcchH---------HHHH-hcccHHHHHHhc---CCCceEEEeeC
Confidence 345666666554 445779999998652 4221 129999999994 33446666654
No 124
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=73.28 E-value=4.4 Score=46.03 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcCCCEEEEc---ccCCCc-ccCCCcchhHHHHHHhccCCCceEEEecCCCCcccc---ccccCCcccEEE
Q 044163 542 HQSICRLLKDKFIPLILVP---LFPNGE-VQGPNGTLHNFNINILHYAPCTVGIFVDRGLNSCIN---TAKSAKFCYNVA 614 (783)
Q Consensus 542 ~~dI~~~A~e~~a~lIIlp---~h~~g~-~~~~~~~~~~~~~~Vl~~ApCsVgIlVdRg~~~~~~---~~~~~~~~~~I~ 614 (783)
.++||.+|+|+++|+|++| ||.+.. ..+-++.++.+-+.-+..-||..-++-|.+...+.. .+--.....+|.
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~VNY~DpNlNIs 120 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRKTLHRCLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNVNYEDPNLNIS 120 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHHHHHHHHHHHHHHccCCCceeeEEecccceeccccccceecccCCCccee
Confidence 4689999999999999999 662221 111234455566666778899999988886431111 111112235899
Q ss_pred EeccC--CccHH
Q 044163 615 VFFIG--GPDDR 624 (783)
Q Consensus 615 v~f~G--G~ddr 624 (783)
+|+++ |-||.
T Consensus 121 IPVFsIHGNHDD 132 (646)
T KOG2310|consen 121 IPVFSIHGNHDD 132 (646)
T ss_pred eeeEEeecCCCC
Confidence 99988 76664
No 125
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=72.66 E-value=1.4e+02 Score=32.01 Aligned_cols=279 Identities=14% Similarity=0.095 Sum_probs=134.3
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhh
Q 044163 83 EMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASR 162 (783)
Q Consensus 83 ~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~ 162 (783)
.++...++-+--+-...++.=++.|.+++.|.++|.+.+-+... +..++|+.+++.+.+...+ +.|.. .-+++-|-
T Consensus 54 ~S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~s-v~~vlGfIl~yp~~ksf~g-d~Wka--~gmi~gSy 129 (384)
T COG5505 54 ESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLISS-VGTVLGFILAYPLLKSFIG-DLWKA--GGMISGSY 129 (384)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHHH-HHHHHHHHHHHHHHhhhcc-hHHhh--hhheeeee
Confidence 34444444444444445555679999999999999876644433 4455677777766554322 22211 11111122
Q ss_pred ccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH-HHHHHh-c----Ch---hH-HHHHHHHHHHHHHHHHHHH
Q 044163 163 SSFAVVVDAISELKLLNSELGQLTMSTAVIHEILGWLNSI-LSQLMR-G----GL---QR-ILVVHVGAVCALSIFTIIV 232 (783)
Q Consensus 163 TS~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill~-v~~~~~-~----~~---~~-~~~~~~~~~i~f~~~~~~v 232 (783)
|.=.+=...+++ .++.| ....+++..-|.++.-++. +.+.+. . .. +. .-+..-... .
T Consensus 130 tGGSaNmAAmqa--aLeVP--~~~fsatlaaDtv~ySll~~lli~iVpy~~kw~~~tkpdesKL~A~~~e---------~ 196 (384)
T COG5505 130 TGGSANMAAMQA--ALEVP--GEYFSATLAADTVMYSLLFFLLISIVPYKWKWRHYTKPDESKLKADGNE---------G 196 (384)
T ss_pred eCCcchHHHHHh--hhcCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccHHHHhhhhhh---------h
Confidence 221111111222 23333 3467777778876654432 222221 0 00 00 000000000 0
Q ss_pred HHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHH---------------HHHHHHHHhcCCCCCchhHH
Q 044163 233 LRLMIEWIIRRTPERKPVKDVYIIAIMIGAITLGFIYEGLNSNYM---------------IGAAMFGLVIPAGPPLGSAL 297 (783)
Q Consensus 233 ~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~~---------------lGaF~aGl~l~~~~~~~~~l 297 (783)
....-.| | .||.+-..+.+.+...+..+.++...|-+-. +=.=+.|+++.-+ |+.+-
T Consensus 197 a~~e~yw--K----rkp~Sl~D~afl~Gislav~AVa~~Is~~l~~~s~gl~~~~gt~t~v~vsi~gLi~aLt-Pf~~l- 268 (384)
T COG5505 197 ASAESYW--K----RKPISLKDIAFLAGISLAVVAVAMKISGYLKSISHGLLTGLGTQTLVLVSITGLIIALT-PFERL- 268 (384)
T ss_pred hhhhhhh--h----cCCccHHHHHHHhhHHHHHHHHHHHHHhhccccccccccccceeeehHHHHHHHHHHhC-ccccC-
Confidence 0000000 1 1233333444555544544444444433221 1122445555555 33211
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHH
Q 044163 298 VEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGII 377 (783)
Q Consensus 298 ~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~ 377 (783)
.-.+++ ..+++=.|++.++.-.|+..+.+.+.| ++..+...+...+..+..+++++.+.-+-.. +.+-|..|-.
T Consensus 269 -pgs~el-gtv~lY~~v~vias~Ad~~~i~taP~~---i~~gf~il~~h~~v~f~~~KlF~~dL~~i~~-AslAniGG~~ 342 (384)
T COG5505 269 -PGSQEL-GTVLLYLFVVVIASPADLRLIVTAPLI---ILFGFIILISHLAVSFAAGKLFRVDLEEILL-ASLANIGGPT 342 (384)
T ss_pred -Cchhhh-hHHHHHHHHHHhccchhHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHhccCCcc
Confidence 112233 345666788999999999887332333 2222333455777778888999888866544 3435666777
Q ss_pred HHHHHhhhcccCccc
Q 044163 378 ELMHFLRWRSRKYVD 392 (783)
Q Consensus 378 ~lii~~i~~~~gii~ 392 (783)
+.-+...+++..++.
T Consensus 343 sAp~~A~A~nr~lv~ 357 (384)
T COG5505 343 SAPAMAIAKNRELVA 357 (384)
T ss_pred chhHHHhhcCchhcc
Confidence 766666666544443
No 126
>PRK04972 putative transporter; Provisional
Probab=72.38 E-value=9.7 Score=44.86 Aligned_cols=86 Identities=14% Similarity=0.147 Sum_probs=61.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCChHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHH-HH
Q 044163 84 MLVVNTLATMGGIYFVFIVTVKMDKAMI---LRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYIS-FL 159 (783)
Q Consensus 84 ~~~l~~la~iGl~~llF~~Gle~d~~~l---~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg-~~ 159 (783)
.....++.++|+.+|+..+|+.--.+.+ ++.+.+.+.+|.+-.++|.++++.+++++.+.. ....+| ++
T Consensus 438 ~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~-------~~~~~G~~a 510 (558)
T PRK04972 438 QGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAVGGQMLIAGLIVSLVPVVICFLFGAYVLRMN-------RALLFGAIM 510 (558)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------HHHHHHHHh
Confidence 4567789999999999999998765444 555667777778878888888888887665542 234444 44
Q ss_pred HhhccHHHHHHHHHhcc
Q 044163 160 ASRSSFAVVVDAISELK 176 (783)
Q Consensus 160 ls~TS~~Vv~~iL~el~ 176 (783)
=+.|++|.+....+..+
T Consensus 511 G~~t~~~~l~~~~~~~~ 527 (558)
T PRK04972 511 GARTCAPAMEIISDTAR 527 (558)
T ss_pred CCCCCcHHHHHHHhhcC
Confidence 56788888876654443
No 127
>COG2855 Predicted membrane protein [Function unknown]
Probab=71.62 E-value=1.6e+02 Score=32.16 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhh
Q 044163 88 NTLATMGGIYFVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASR 162 (783)
Q Consensus 88 ~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~ 162 (783)
..+=++|++ +-|.+++++++...+.+.+.+-.......+++++.++.+++.+ +..++++|.--++
T Consensus 69 k~LLr~gIv----LlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~lg~~lgld------~~~a~Lia~GssI 133 (334)
T COG2855 69 KKLLRLGIV----LLGFRLTLSDIADVGGSGVLIIAITLSSTFLFAYFLGKLLGLD------KKLALLIAAGSSI 133 (334)
T ss_pred HHHHHHHHH----HHcceeeHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHHccchh
Confidence 345566666 4589999999999999998888877777888777777765543 4667776654443
No 128
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=68.42 E-value=15 Score=38.58 Aligned_cols=107 Identities=20% Similarity=0.245 Sum_probs=63.4
Q ss_pred eccCCccHHHHHHHHHHHhc-CCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEE---EEecChHH
Q 044163 616 FFIGGPDDREAMALVSRMSG-HPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQ---IVANDTKQ 691 (783)
Q Consensus 616 ~f~GG~ddreAL~~a~rma~-~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e---~~v~~~~e 691 (783)
|..=.|.|+-|++.|.|+.+ ..+.++|++.+.++. . ++.+.+-... +-++..-.+ -.-.|...
T Consensus 32 ~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~----------a-~~~lr~aLAm--GaDraili~d~~~~~~d~~~ 98 (260)
T COG2086 32 PLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ----------A-EEALREALAM--GADRAILITDRAFAGADPLA 98 (260)
T ss_pred CcccChhhHHHHHHHHHhhccCCCceEEEEEecchh----------h-HHHHHHHHhc--CCCeEEEEecccccCccHHH
Confidence 44445789999999999999 699999999987542 1 1233332111 223322211 00124455
Q ss_pred HHHHHHhh--ccCCcEEEEcccCCC-----CchhhhccCCCCCCCccchhhhhh
Q 044163 692 LVSAVRSL--ERSNDLVIVGRQQAF-----SSQLEEEMRPWVEYEELGIIGDLL 738 (783)
Q Consensus 692 ~~~~i~~~--~~~~DLvIVG~~~~~-----~s~~~~gl~~W~e~~eLG~igd~L 738 (783)
+..+|.+. ..++|||+.|..... ..++++.+.+| |....+-+.-
T Consensus 99 ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~---P~~t~v~~i~ 149 (260)
T COG2086 99 TAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGW---PQVTYVSKIE 149 (260)
T ss_pred HHHHHHHHHHhcCCCEEEEecccccCCccchHHHHHHHhCC---ceeeeEEEEE
Confidence 55555553 245889999998532 23555566666 6666655544
No 129
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=68.33 E-value=34 Score=38.04 Aligned_cols=105 Identities=10% Similarity=0.083 Sum_probs=58.6
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 277 MIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQL-TDIHSIESWRSFLALELILVSAYLGKVVGCILGLI 355 (783)
Q Consensus 277 ~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~-~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 355 (783)
++...++|.+..+..-+.++-.+.+..++..+++|.+....=.+ .+...+ . .++.+.+..++..+.-++.+++..+
T Consensus 9 i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (385)
T PF03547_consen 9 IFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDL--L-SLWFIPVFAFIIFILGLLLGFLLSR 85 (385)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh--h-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445667666665456677778888899999999975544334 333333 1 2323333333333334555566677
Q ss_pred hcCCChHHHH--HHHHHhhhhHHHHHHHHhh
Q 044163 356 SFKASIRNAL--LFSCFLNIKGIIELMHFLR 384 (783)
Q Consensus 356 ~~~~~~~~~l--~lg~~m~~rG~~~lii~~i 384 (783)
+++.+.++.- .++.....-|.+.+-+...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~ 116 (385)
T PF03547_consen 86 LFRLPKEWRGVFVLAASFGNTGFLGLPILQA 116 (385)
T ss_pred hcCCCcccceEEEecccCCcchhhHHHHHHH
Confidence 6776665433 3333344556655555543
No 130
>PRK03818 putative transporter; Validated
Probab=67.36 E-value=77 Score=37.40 Aligned_cols=82 Identities=17% Similarity=0.140 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCChHHHHH----hhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH-
Q 044163 84 MLVVNTLATMGGIYFVFIVTVKMDKAMILR----TVKKTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISF- 158 (783)
Q Consensus 84 ~~~l~~la~iGl~~llF~~Gle~d~~~l~~----~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~- 158 (783)
......+.++|+.+|+..+|++--.+.+.. .+.+.+.+|.+-.++|.++++.+++++.+.. ....+|.
T Consensus 428 ~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G~~~~~~g~~v~~~~~~~~~~~~~~~~~~~-------~~~~~G~~ 500 (552)
T PRK03818 428 PSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEGLSWIGYGFLITAVPLLIVGILARMLAKMN-------YLTLCGML 500 (552)
T ss_pred HHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------HHHHHHHH
Confidence 445678899999999999999887665543 3556667777777788888888876654432 2344553
Q ss_pred HHhhccHHHHHHHH
Q 044163 159 LASRSSFAVVVDAI 172 (783)
Q Consensus 159 ~ls~TS~~Vv~~iL 172 (783)
+=+.|++|.+....
T Consensus 501 aG~~t~tp~l~~a~ 514 (552)
T PRK03818 501 AGSMTDPPALAFAN 514 (552)
T ss_pred hccCCCcHHHHHHh
Confidence 45678888876553
No 131
>PRK09903 putative transporter YfdV; Provisional
Probab=66.88 E-value=62 Score=35.06 Aligned_cols=106 Identities=17% Similarity=0.073 Sum_probs=62.1
Q ss_pred CchhHHHh-hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHHHHHHH-HHH
Q 044163 51 VLPVVMIQ-SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWNVSMTV-LLV 128 (783)
Q Consensus 51 ~lP~l~~~-aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~-~li 128 (783)
+-|.+.+. +|+++.- +|.. .|..-.+.++.+++...-+-||..|+.+....++.. ++.+...+.- ++.
T Consensus 172 ~nP~iia~~~gl~~~l--~~i~-------lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~-~~~~~~~~~Kli~~ 241 (314)
T PRK09903 172 KEPVVWAPVLATILVL--VGVK-------IPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS-AEIAYNTFLKLILM 241 (314)
T ss_pred hchHHHHHHHHHHHHH--cCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-HHHHHHHHHHHHHH
Confidence 34777776 7877653 3431 233457889999999999999999998876655433 3333333333 335
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHhhccHHHHHHHHHh
Q 044163 129 PLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSSFAVVVDAISE 174 (783)
Q Consensus 129 p~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~e 174 (783)
|++. ++...+++-. ....-...+.+...+++...++.+
T Consensus 242 P~i~-~~~~~~~~l~-------~~~~~v~vl~aa~P~a~~~~i~A~ 279 (314)
T PRK09903 242 PLAL-LLVGMACHLN-------SEHLQMMVLAGALPPAFSGIIIAS 279 (314)
T ss_pred HHHH-HHHHHHcCCC-------cHHHHHHHHHHcccHHHHHHHHHH
Confidence 6644 3333333211 223334556666666666666644
No 132
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=65.85 E-value=13 Score=36.07 Aligned_cols=83 Identities=20% Similarity=0.216 Sum_probs=48.5
Q ss_pred ccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEEEE-ec--ChHHHHHHHH
Q 044163 621 PDDREAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQIV-AN--DTKQLVSAVR 697 (783)
Q Consensus 621 ~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~-v~--~~~e~~~~i~ 697 (783)
+.|+|+++.|+++++..+.+++++-+.+.. ..+ +.+.+...+. .-+++-..+-- .. +.+....++.
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G~~~---------~~~-~~l~~~l~~~-G~d~v~~~~~~~~~~~~~~~~a~~l~ 83 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLGPAE---------EAA-EALRKALAKY-GADKVYHIDDPALAEYDPEAYADALA 83 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEETCC---------CHH-HHHHHHHHST-TESEEEEEE-GGGTTC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEecch---------hhH-HHHhhhhhhc-CCcEEEEecCccccccCHHHHHHHHH
Confidence 779999999999999999999999876211 111 2233333222 22334332200 11 2344555666
Q ss_pred hhc--cCCcEEEEcccCCC
Q 044163 698 SLE--RSNDLVIVGRQQAF 714 (783)
Q Consensus 698 ~~~--~~~DLvIVG~~~~~ 714 (783)
+.. .++|+|++|.+...
T Consensus 84 ~~~~~~~~~lVl~~~t~~g 102 (164)
T PF01012_consen 84 ELIKEEGPDLVLFGSTSFG 102 (164)
T ss_dssp HHHHHHT-SEEEEESSHHH
T ss_pred HHHHhcCCCEEEEcCcCCC
Confidence 553 56999999998643
No 133
>COG2985 Predicted permease [General function prediction only]
Probab=65.66 E-value=19 Score=40.75 Aligned_cols=78 Identities=15% Similarity=0.223 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhhcCChHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH-HHhhccHHH
Q 044163 92 TMGGIYFVFIVTVKMDKAM---ILRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISF-LASRSSFAV 167 (783)
Q Consensus 92 ~iGl~~llF~~Gle~d~~~---l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~-~ls~TS~~V 167 (783)
++|++++.+.+|+|--+.. +++.+++-..++++- ++.+..+++.+...+. +...+..|. .=+.||+|.
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~Gl~~~~~alli----vi~~~~~a~~l~k~~~----~~~~~~~Gm~sGAlTsTP~ 133 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSGLNLNAFALLI----VIAALLLAWVLHKLFG----IDLGLIAGMFSGALTSTPG 133 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhhhHHHHHHHHH----HHHHHHHHHHHHhhcC----CCHHHhhhhhcccccCCch
Confidence 8999999999999987654 567777766665543 3344444555544432 222333332 234566665
Q ss_pred HH---HHHHhccc
Q 044163 168 VV---DAISELKL 177 (783)
Q Consensus 168 v~---~iL~el~l 177 (783)
.. .+|+|++.
T Consensus 134 L~aa~~~L~~lg~ 146 (544)
T COG2985 134 LGAAQDILRELGA 146 (544)
T ss_pred hHHHHHHHHhhcc
Confidence 54 46666664
No 134
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=64.85 E-value=1.7e+02 Score=29.95 Aligned_cols=107 Identities=10% Similarity=0.058 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHH
Q 044163 297 LVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGI 376 (783)
Q Consensus 297 l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~ 376 (783)
+..-+++-+-.+-+|+| =+.+.+ ...|..++.-+....+.-++.+++.++++|.+..-. ..+.+|..
T Consensus 51 l~~lLgPatVALAvPLY-------~~~~~l--~~~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~~~----~Sl~pkSV 117 (215)
T PF04172_consen 51 LSFLLGPATVALAVPLY-------RQRRLL--KKNWIPILVGVLVGSLVSIFSAVLLARLLGLSPEII----LSLAPKSV 117 (215)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHH----HHHHHHHh
Confidence 33344444445555655 122333 234444455555556667777788889999876433 34689998
Q ss_pred HHHHHHhhhcccCccchhhHHHHHHHHHHHHHhHHHHHHH
Q 044163 377 IELMHFLRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAI 416 (783)
Q Consensus 377 ~~lii~~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~ 416 (783)
..-+...+..+.|-..+-+-...+++-++-..+.++++++
T Consensus 118 TtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g~~llk~ 157 (215)
T PF04172_consen 118 TTPIAIEISEQIGGIPSLTAVFVVITGILGAVLGPPLLKL 157 (215)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHHhH
Confidence 8888888888877766555555555555655666777776
No 135
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=64.20 E-value=87 Score=35.33 Aligned_cols=68 Identities=13% Similarity=0.094 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhh
Q 044163 306 THFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIK 374 (783)
Q Consensus 306 ~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~r 374 (783)
..+.+.+-..-.|++++++.+ ....|....+.++-..+.-.+.+..+.+.++.+|-|++.+|......
T Consensus 64 g~lALaiILfdgG~~T~lss~-r~a~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgST 131 (574)
T COG3263 64 GNLALAIILFDGGFGTQLSSF-RVAAGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGST 131 (574)
T ss_pred HHHHHHHHhhcCccCCcHHHH-HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccc
Confidence 444455555567899998877 33334333333333444555566666778899999999999876554
No 136
>COG3329 Predicted permease [General function prediction only]
Probab=61.01 E-value=1.3e+02 Score=32.15 Aligned_cols=121 Identities=10% Similarity=0.026 Sum_probs=67.6
Q ss_pred hhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 274 SNYMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILG 353 (783)
Q Consensus 274 ~~~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~ 353 (783)
+++.+.-|+.|++.+-.. -.-++-+.+-...+-.++---=..-|+.+.-+.+ +. ....++.-+.+.++.-+++.++.
T Consensus 16 ~sP~llFf~~Gmlia~~k-sdl~iP~~i~~~lslyLL~aIG~kGGveir~snl-~a-~v~~~~~~~aL~~li~~ia~f~l 92 (372)
T COG3329 16 LSPTLLFFILGMLIAAFK-SDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNL-TA-MVLPVALGVALGFLIVFIAYFLL 92 (372)
T ss_pred ccchHHHHHHHHHHHHHh-ccccCchHHHHHHHHHHHHHHhcccceeeecCCc-ch-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888888887541 1111222222211111111111233444544444 22 23334445555666677788888
Q ss_pred HHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccchhhHH
Q 044163 354 LISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDIQTFS 397 (783)
Q Consensus 354 ~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~~~f~ 397 (783)
.++.+++..|+...+..-..-..+..+.+..-++.--+.-+-|.
T Consensus 93 ~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym 136 (372)
T COG3329 93 RKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYM 136 (372)
T ss_pred HHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHH
Confidence 88889999999999887777777777666655544334444443
No 137
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=59.11 E-value=58 Score=32.14 Aligned_cols=36 Identities=14% Similarity=0.289 Sum_probs=31.9
Q ss_pred EEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEee
Q 044163 612 NVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRIN 647 (783)
Q Consensus 612 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~ 647 (783)
||+|.+-||.|.--++.++.+.+++.+.+++++++-
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd 36 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVD 36 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 589999999999999999999887777888888874
No 138
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=57.90 E-value=1.1e+02 Score=33.37 Aligned_cols=131 Identities=14% Similarity=0.097 Sum_probs=75.2
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhh-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 277 MIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWR-SFLALELILVSAYLGKVVGCILGLI 355 (783)
Q Consensus 277 ~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~-~~~~~~~ii~~~~~~K~~~~~l~~~ 355 (783)
++|+.+++.+..-..+..-.....+... ...+-=+.+|.+++.+.+.... .|...++..+...+.-.+..++..|
T Consensus 2 llG~~ia~~~~~~~~~~~~~~p~~~r~~----~q~ilG~~iG~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r 77 (318)
T PF05145_consen 2 LLGPMIAVIIAALFGPLPLRVPRRLRNA----GQAILGVSIGSSFTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLRR 77 (318)
T ss_pred chHHHHHHHHHHHhCCCccCCCHHHHHH----HHHHHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677777776665433333333333333 2334456789999987772222 3334455555666677888888899
Q ss_pred hcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccchh---hHHHHHHHHHHHHHhHHHHHHHhcc
Q 044163 356 SFKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDIQ---TFSELVLSNLVLTAIVTPLIAIFYK 419 (783)
Q Consensus 356 ~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~~---~f~~lv~~~vl~t~i~~pl~~~l~~ 419 (783)
..+++..++++- ..|-|..+.+... .|.|- |.. ....+=+..+ ..+.|+++....+
T Consensus 78 ~~~~d~~TA~~~---~~PGg~s~m~~la--~~~ga-d~~~Va~~q~lRl~~V--v~~vP~i~~~~~~ 136 (318)
T PF05145_consen 78 ISGLDRATAFFA---SMPGGLSEMVALA--EEYGA-DTRRVALVQSLRLLLV--VLLVPFIASLLGG 136 (318)
T ss_pred HcCCChhHHHHH---cCCccHHHHHHHH--HHcCC-ChhhhHHHHHHHHHHH--HHHHHHHHHHhhh
Confidence 999998888743 5777777776544 44442 211 1111111111 3446777776654
No 139
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=56.65 E-value=39 Score=32.65 Aligned_cols=88 Identities=14% Similarity=0.082 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHhcccccccccc--hhhH-HHHHHHHHHHHHHHHHHH
Q 044163 276 YMIGAAMFGLVIPAGP---PLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIE--SWRS-FLALELILVSAYLGKVVG 349 (783)
Q Consensus 276 ~~lGaF~aGl~l~~~~---~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~--~~~~-~~~~~~ii~~~~~~K~~~ 349 (783)
..-|++++|+++.... |..-.+......+.+++.+-+|...+|++.-...+. .... +....+..++.++.-.+.
T Consensus 23 ~~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~ 102 (154)
T TIGR01625 23 NAGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLV 102 (154)
T ss_pred ccHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence 3457788888887753 233334444555567888889999999998765441 1112 122222223333444556
Q ss_pred HHHHHHhcCCChHH
Q 044163 350 CILGLISFKASIRN 363 (783)
Q Consensus 350 ~~l~~~~~~~~~~~ 363 (783)
.++..+++|+++-.
T Consensus 103 ~~~~~~~~~~~~~~ 116 (154)
T TIGR01625 103 AVALIKLLRINYAL 116 (154)
T ss_pred HHHHHHHhCCCHHH
Confidence 66666788888753
No 140
>COG4827 Predicted transporter [General function prediction only]
Probab=56.23 E-value=2.3e+02 Score=28.64 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhhcCChHHHHH--hhhhHHHHHHHHHHHHHHHHHHHH
Q 044163 89 TLATMGGIYFVFIVTVKMDKAMILR--TVKKTWNVSMTVLLVPLIISFLVA 137 (783)
Q Consensus 89 ~la~iGl~~llF~~Gle~d~~~l~~--~~~~~~~i~~~~~lip~~~g~~~~ 137 (783)
..-..|..+.+|..|++.-+..=.. ..|++..|+....+....++.+..
T Consensus 9 l~~~~gIl~~ilIfGlKtGlg~GFag~~~r~a~~Iaa~yg~li~a~~gla~ 59 (239)
T COG4827 9 LTYVIGILIGILIFGLKTGLGCGFAGITTREALTIAASYGFLILAFGGLAD 59 (239)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3447888899999999876543221 234466665554444444444433
No 141
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=54.99 E-value=1.3e+02 Score=28.69 Aligned_cols=28 Identities=11% Similarity=0.351 Sum_probs=14.7
Q ss_pred HHHHHH--HhcccccccccchhhHHHHHHHH
Q 044163 310 LPFFYI--RLGQLTDIHSIESWRSFLALELI 338 (783)
Q Consensus 310 ~PlFFv--~~G~~~dl~~l~~~~~~~~~~~i 338 (783)
+|+||+ .+|.-...+.+ ....|.+++.+
T Consensus 69 m~LfFVPagVGim~~~~ll-~~~~~~Il~~i 98 (141)
T PRK04125 69 IGFLFVPSGISVINSLGVM-SQYPVQIIGVI 98 (141)
T ss_pred HHHHHhhhHhHHHHhHHHH-HHHHHHHHHHH
Confidence 677886 55555555655 33334333333
No 142
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=54.29 E-value=95 Score=35.02 Aligned_cols=102 Identities=15% Similarity=0.128 Sum_probs=61.0
Q ss_pred chhHHHHHHhccCCCceEEEecCCCCccccccccCCcccEEEEeccCCccHHHHHHHHHHHh-cCCCeEEEEEEeeecCc
Q 044163 573 TLHNFNINILHYAPCTVGIFVDRGLNSCINTAKSAKFCYNVAVFFIGGPDDREAMALVSRMS-GHPGVSITVFRINLEEN 651 (783)
Q Consensus 573 ~~~~~~~~Vl~~ApCsVgIlVdRg~~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~a~rma-~~~~~~ltv~~~~~~~~ 651 (783)
...+++++|+-.+| .+..+...+ ....-+|||.|-||-|.---..++.+.+ +|+.+.+-=+.|..++.
T Consensus 224 l~ds~k~rvl~i~~----rl~~~i~~~-------c~~~s~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~ 292 (520)
T KOG0573|consen 224 LRDSLKDRVLVIPP----RLCANILLR-------CIHESNVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPEG 292 (520)
T ss_pred HHHHHhhhhhccCh----hHhhhcccc-------ccccCcEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCCc
Confidence 34566777777776 111111110 0122489999999999999888888887 44455554455543321
Q ss_pred c-cccchhhhhHHHHHHHHHhhcCCCCCEEEEEEEe
Q 044163 652 I-VENESEKHIDEVVMNEFVASNFGNASVVCRQIVA 686 (783)
Q Consensus 652 ~-~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v 686 (783)
. +.+-.+++....-++|++... .+-...+.|.-|
T Consensus 293 ~~~~~~PDRktgr~g~~eL~s~~-P~R~~nlV~vnV 327 (520)
T KOG0573|consen 293 SKEQNVPDRKTGRRGLEELQSLY-PKRSWNLVEVNV 327 (520)
T ss_pred ccccCCccHHHHHHHHHHHHHhC-CcceEEEEeccC
Confidence 1 122256777778888888765 345566776444
No 143
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=53.53 E-value=2.6e+02 Score=33.08 Aligned_cols=74 Identities=15% Similarity=0.214 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH---------hcCCChHHHHHHHHHhhhhHH
Q 044163 306 THFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLI---------SFKASIRNALLFSCFLNIKGI 376 (783)
Q Consensus 306 ~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~---------~~~~~~~~~l~lg~~m~~rG~ 376 (783)
..+++|.-....|..+|...+ . ..+..++.+.+..++.-.+.+..... ..++++.+++.+|.++++-.-
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f-~-~n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDP 146 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNF-F-ENLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDP 146 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCch
Confidence 456788888889999999887 2 22322222222222222221111111 125699999999999999887
Q ss_pred HHHHH
Q 044163 377 IELMH 381 (783)
Q Consensus 377 ~~lii 381 (783)
++..-
T Consensus 147 VAVla 151 (559)
T TIGR00840 147 VAVLA 151 (559)
T ss_pred HHHHH
Confidence 76553
No 144
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=52.83 E-value=65 Score=33.18 Aligned_cols=60 Identities=15% Similarity=0.140 Sum_probs=48.0
Q ss_pred EEEEEEEcCCC-ChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 529 VQPFIMISPYD-TMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 529 v~~~t~vs~~~-~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
..++|-++|.+ +..++|.+.+.+-++|.|++|-. +|. +.....++..++-++..-+|-++
T Consensus 16 ~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS-~gv---t~~~~~~~v~~ik~~~~lPvilf 76 (240)
T COG1646 16 KRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGS-DGV---TEENVDNVVEAIKERTDLPVILF 76 (240)
T ss_pred ceEEEEeCcccccccHHHHHHHHHcCCCEEEECCc-ccc---cHHHHHHHHHHHHhhcCCCEEEe
Confidence 56899999999 99999999999999999999943 333 34457778888877877776555
No 145
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=50.40 E-value=2.2e+02 Score=30.96 Aligned_cols=91 Identities=11% Similarity=0.129 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhccccccccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 277 MIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSI-ESWRSFLALELILVSAYLGKVVGCILGLI 355 (783)
Q Consensus 277 ~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 355 (783)
++.+.++|...|.....+..+.. |.. ....+.+-|...|++++.+.+ .....|...+......++.=.+.++...+
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~~--~~~-~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~ 83 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIKP--EYV-IKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSR 83 (313)
T ss_pred HHHHHHHHHHcCcccccCCccch--hhh-HHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888876443333321 122 223355666678999998877 22334544333333344434444444444
Q ss_pred hcCCChHHHHHHHHH
Q 044163 356 SFKASIRNALLFSCF 370 (783)
Q Consensus 356 ~~~~~~~~~l~lg~~ 370 (783)
..+-...+.+..|+.
T Consensus 84 l~~~~~~~~l~~Gl~ 98 (313)
T PF13593_consen 84 LFPAFLPPELALGLL 98 (313)
T ss_pred HhhccCCHHHHHHHH
Confidence 443212233555543
No 146
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=49.69 E-value=1.1e+02 Score=28.16 Aligned_cols=97 Identities=10% Similarity=0.103 Sum_probs=55.1
Q ss_pred CCceEEEEEeeccCCCCCcccccccccccc---cccchhHHHHHHHHHHhhcCCCCeEEEEEEEEcCCCChHHHHHHHHH
Q 044163 474 NPICAYPVHLKDLAGRAAPVVLPYNTQKYK---LASNATDRIMRAVIKYSRSSGPAVAVQPFIMISPYDTMHQSICRLLK 550 (783)
Q Consensus 474 ~p~~v~~lhlvel~~r~~~~~~~~~~~~~~---~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~ 550 (783)
-...|.-+|++|.++- .+.+..++.--.+ ......+...+-++...+.....+-++.-. ....+.+++++.|+
T Consensus 21 L~r~V~~v~v~e~~d~-~~~l~~gElvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~---~~~~iP~~~i~~A~ 96 (123)
T PF07905_consen 21 LDRPVRWVHVMEAPDP-SDWLRGGELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGR---YLDEIPEEIIELAD 96 (123)
T ss_pred CCCcEEEEEEeecCCH-HHhCCCCeEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccC---ccccCCHHHHHHHH
Confidence 3456888999998843 2333233211001 111122234455555554333334443322 23588999999999
Q ss_pred hcCCCEEEEcccCCCcccCCCcchhHHHHHHhc
Q 044163 551 DKFIPLILVPLFPNGEVQGPNGTLHNFNINILH 583 (783)
Q Consensus 551 e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~ 583 (783)
+++-.++.+||+ ..|.++.+.|.+
T Consensus 97 ~~~lPli~ip~~---------~~f~~I~~~v~~ 120 (123)
T PF07905_consen 97 ELGLPLIEIPWE---------VPFSDITREVMR 120 (123)
T ss_pred HcCCCEEEeCCC---------CCHHHHHHHHHH
Confidence 999999999995 245555555543
No 147
>COG2985 Predicted permease [General function prediction only]
Probab=49.18 E-value=44 Score=37.98 Aligned_cols=85 Identities=15% Similarity=0.173 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCChHH---HHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHH-HH
Q 044163 84 MLVVNTLATMGGIYFVFIVTVKMDKAM---ILRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYIS-FL 159 (783)
Q Consensus 84 ~~~l~~la~iGl~~llF~~Gle~d~~~---l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg-~~ 159 (783)
......+.++|+.++|=-+|++---+. +-..+-.....|.+-.++|.+.+++++.++.+.. ...+.| ++
T Consensus 423 ~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~Gl~~ig~g~lit~vp~i~~~llg~~v~kmn-------~~~l~G~la 495 (544)
T COG2985 423 PGALLALRELGLALFLAGVGLSAGSGFVNTLTGSGLQIIGYGALVTLVPVIIVFLLGRYVLKMN-------WLLLCGALA 495 (544)
T ss_pred hhHHHHHHHHHHHHHHHhhccccccchHhhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHhcc-------HHHHhhHHh
Confidence 456778899999988777777643222 2334444555566666778888888888877653 233344 45
Q ss_pred HhhccHHHHHHHHHhcc
Q 044163 160 ASRSSFAVVVDAISELK 176 (783)
Q Consensus 160 ls~TS~~Vv~~iL~el~ 176 (783)
=+.|++|.+. ..+|..
T Consensus 496 Gs~T~ppaLa-~and~~ 511 (544)
T COG2985 496 GSMTDPPALA-FANDAA 511 (544)
T ss_pred cCCCChHHHH-HHhhcc
Confidence 5778888764 344443
No 148
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=45.58 E-value=47 Score=36.05 Aligned_cols=57 Identities=26% Similarity=0.301 Sum_probs=41.0
Q ss_pred cccEEEEeccCCccHHHHHHHHHHHhcCCCe-EEEEEEeeecCcccccchhhhhHHHHHHHHHhh
Q 044163 609 FCYNVAVFFIGGPDDREAMALVSRMSGHPGV-SITVFRINLEENIVENESEKHIDEVVMNEFVAS 672 (783)
Q Consensus 609 ~~~~I~v~f~GG~ddreAL~~a~rma~~~~~-~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 672 (783)
...+|+|-|-||+|.-.-|.++.+.|++.+- ++.|+++--+ -+.....+.+++....
T Consensus 26 ~f~~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~VlfiD~E-------~QYs~TidyV~em~~~ 83 (407)
T COG3969 26 TFPRVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFIDWE-------AQYSCTIDYVQEMRES 83 (407)
T ss_pred cCCeEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEEcch-------hhhhhHHHHHHHHHhc
Confidence 3569999999999999999999999977766 7888885321 1122233566666654
No 149
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=44.62 E-value=3.2e+02 Score=29.84 Aligned_cols=67 Identities=9% Similarity=-0.078 Sum_probs=35.3
Q ss_pred hcccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHh---hhhHHHHHHHHhhh
Q 044163 317 LGQLTDIHSIE-SWRSFLALELILVSAYLGKVVGCILGLIS-FKASIRNALLFSCFL---NIKGIIELMHFLRW 385 (783)
Q Consensus 317 ~G~~~dl~~l~-~~~~~~~~~~ii~~~~~~K~~~~~l~~~~-~~~~~~~~l~lg~~m---~~rG~~~lii~~i~ 385 (783)
.|++++++++. ....+....+..+.-++...+.++..++. ++.+.. +.+|+.+ +|-|..+.+...++
T Consensus 56 mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T~lA 127 (328)
T TIGR00832 56 PLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWNQLA 127 (328)
T ss_pred hhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHHHHc
Confidence 34666555551 11223334444444555666667766665 365543 5566544 45566666655554
No 150
>PRK04972 putative transporter; Provisional
Probab=44.30 E-value=1.8e+02 Score=34.36 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHhhhcCChHHH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHH-HHhhccH
Q 044163 90 LATMGGIYFVFIVTVKMDKAMI---LRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISF-LASRSSF 165 (783)
Q Consensus 90 la~iGl~~llF~~Gle~d~~~l---~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~-~ls~TS~ 165 (783)
+.++|+.+|+|.+|++.-++.+ ++.+.+...+++.-.+++.++++.++++++.. .....|+ +=+.|++
T Consensus 61 ~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~G~~aGa~T~t 132 (558)
T PRK04972 61 ALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWD--------IGLTAGMLAGSMTST 132 (558)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHhhccccCc
Confidence 4589999999999999987665 44555666666666666666666666554332 2223333 3355777
Q ss_pred HHHHHHHH
Q 044163 166 AVVVDAIS 173 (783)
Q Consensus 166 ~Vv~~iL~ 173 (783)
|.+....+
T Consensus 133 p~l~~a~~ 140 (558)
T PRK04972 133 PVLVGAGD 140 (558)
T ss_pred HHHHHHHH
Confidence 77666554
No 151
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=43.55 E-value=1.1e+02 Score=29.97 Aligned_cols=57 Identities=14% Similarity=0.272 Sum_probs=42.3
Q ss_pred EEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhc
Q 044163 612 NVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASN 673 (783)
Q Consensus 612 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 673 (783)
+|+|-+-||+|.--.+.+...+.++.+.+++++++-..-. .+...+.+.++++.++.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~-----~~s~~~~~~v~~~~~~~ 57 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLR-----EESDEEAEFVEEICEQL 57 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STS-----CCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCC-----cccchhHHHHHHHHHhc
Confidence 5889999999999999999999999999999999864321 11234457788887765
No 152
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=43.54 E-value=43 Score=33.57 Aligned_cols=45 Identities=13% Similarity=0.143 Sum_probs=38.1
Q ss_pred HHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc
Q 044163 100 FIVTVKMDKAMILRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHV 144 (783)
Q Consensus 100 F~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~ 144 (783)
-....|.|.+++||.+.....--+.+.++||++|..+++.+++..
T Consensus 90 vaTAf~v~~~e~kkaG~~G~vsL~~G~v~~F~~Ga~vA~afGY~D 134 (254)
T TIGR00808 90 VATAFEVDVKEVKKAGKVGMVALLLGCVIPFVIGAMVAWAFGYRD 134 (254)
T ss_pred HHHhhcCcHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 345679999999999988777778899999999999999987653
No 153
>COG0679 Predicted permeases [General function prediction only]
Probab=42.54 E-value=4.7e+02 Score=28.25 Aligned_cols=138 Identities=14% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 276 YMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLI 355 (783)
Q Consensus 276 ~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 355 (783)
+++.-...|..+.+.....++-.+-+++++..+.+|.-+...=.+.+.+.. ..+.......+..++.=++...+..+
T Consensus 11 pi~lii~lGy~~~r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (311)
T COG0679 11 PIFLIILLGYLLKRFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL---ADLGLIVASLVATLLAFFLLALIGRF 87 (311)
T ss_pred HHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcCCChHHH--HHHHHHhhhhHHHHHHHHhhhcccCccchhhHHHHHHHHHHHHHhHHHHHHH
Q 044163 356 SFKASIRNA--LLFSCFLNIKGIIELMHFLRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAI 416 (783)
Q Consensus 356 ~~~~~~~~~--l~lg~~m~~rG~~~lii~~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~ 416 (783)
..+.+.++. ...+...+.-|-+.+-++...+..+-+........+......+.-.-.+.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~ 150 (311)
T COG0679 88 LFKLDKRETVIFALASAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARS 150 (311)
T ss_pred HhccchhhHHHHHHHHHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHh
No 154
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=42.25 E-value=5.2e+02 Score=28.67 Aligned_cols=75 Identities=16% Similarity=0.161 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHH
Q 044163 254 YIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSF 332 (783)
Q Consensus 254 ~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~ 332 (783)
.+++-++++.+++.+. =.-.+.+|.+++|-.+.+.. . +++.+..+.-.....--+.=..+|...+-+.+.+++++
T Consensus 232 KilFpivv~i~~~ll~--P~a~pLig~Lm~GNllrEsG-v-~rLs~taqn~l~nivTifLGl~vG~t~~A~~FL~~~tl 306 (399)
T TIGR03136 232 KFVFTIVAAMLLCLLL--PVASPLILSFFLGVAIKEAQ-I-EPYQNLLEKTLTYGSTLFLGLVLGVLCEASTLLDPRVS 306 (399)
T ss_pred hhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhC-c-HHHHHHHHHHHHHHHHHHHHHHhhhhccHHhhCChHHH
Confidence 3555555555555542 23468899999999999874 3 45544444332222222233578888887665355544
No 155
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=41.38 E-value=92 Score=33.67 Aligned_cols=37 Identities=11% Similarity=0.187 Sum_probs=29.7
Q ss_pred cEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEee
Q 044163 611 YNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRIN 647 (783)
Q Consensus 611 ~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~ 647 (783)
.++++.|.||+|+--.|.+|.+.-...+..+.++++-
T Consensus 28 ~~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iD 64 (301)
T PRK05253 28 ENPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVD 64 (301)
T ss_pred CCEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEe
Confidence 4789999999999999999988755445667778753
No 156
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=41.35 E-value=3.5e+02 Score=30.30 Aligned_cols=97 Identities=14% Similarity=0.151 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHhhh---hHH
Q 044163 301 SELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISFKAS-IRNALLFSCFLNI---KGI 376 (783)
Q Consensus 301 l~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~-~~~~l~lg~~m~~---rG~ 376 (783)
+.+.+++.++|+=....=++.|++.+ ...... .+...+++.++-.+|+.+....++.. -.|...++..+.. -|.
T Consensus 52 ~y~~v~~~~vPlai~LlLl~~Dlr~i-~~~g~~-~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs 129 (378)
T PF05684_consen 52 VYDFVWTYLVPLAIPLLLLSADLRRI-LRLGGR-LLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGS 129 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCch
Confidence 34445666677665556678898887 212222 23333444555566666655555433 2343333332222 355
Q ss_pred HHHHHHhhhcccCccchhhHHHHHHH
Q 044163 377 IELMHFLRWRSRKYVDIQTFSELVLS 402 (783)
Q Consensus 377 ~~lii~~i~~~~gii~~~~f~~lv~~ 402 (783)
+-.+...-+++ .+++.|+..+.+
T Consensus 130 ~N~~Av~~al~---~~~~~~~a~~aa 152 (378)
T PF05684_consen 130 VNFVAVAEALG---VSDSLFAAALAA 152 (378)
T ss_pred hHHHHHHHHHC---CCHHHHHHHHHH
Confidence 55554444433 245566554443
No 157
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=41.15 E-value=7.5e+02 Score=30.23 Aligned_cols=116 Identities=10% Similarity=0.098 Sum_probs=66.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhc-----CCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEEecCCCCc-ccccc
Q 044163 531 PFIMISPYDTMHQSICRLLKDK-----FIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIFVDRGLNS-CINTA 604 (783)
Q Consensus 531 ~~t~vs~~~~m~~dI~~~A~e~-----~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIlVdRg~~~-~~~~~ 604 (783)
+.+.++ .++.+++..+.+.. +.+.++++|...-+.+.....+..+.+.|...+.-+-.++|.++... |.+..
T Consensus 754 ~q~vv~--~~ir~g~s~liQs~GlGglkpNtvl~~wP~~wr~e~~~~~~~tFi~~v~~~~a~~~al~v~K~i~~fP~~~e 831 (1075)
T KOG2082|consen 754 AQTVVA--SNLREGISHLIQSCGLGGLKPNTVLMGWPEGWRQEEDPREWKTFIETVRDTTAAHLALLVAKGIDDFPSNVE 831 (1075)
T ss_pred hhhhcc--cchhhhhhhceeeccccCccCceEEEeCcchhcccccchHHHHHHHHHHHhhccceeEEEecCcccCchhhh
Confidence 344454 47889998888765 56889999973222233345677888888888888888999998642 22211
Q ss_pred ccCCcccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeec
Q 044163 605 KSAKFCYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLE 649 (783)
Q Consensus 605 ~~~~~~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~ 649 (783)
.......-.-++.-||-.- ..--+-++---=.++++.++.+-+.
T Consensus 832 r~~G~IDvwWIVhDGG~lm-Ll~~LL~qhkvwr~C~~rif~vaq~ 875 (1075)
T KOG2082|consen 832 RFSGHIDVWWIVHDGGMLM-LLPFLLRQHKVWRKCKMRIFTVAQE 875 (1075)
T ss_pred hhcCceeEEEEEecCchHH-HHHHHHHHHHHHhhceeeEEEEeec
Confidence 1112223344455454432 1111112221224778888887644
No 158
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=40.42 E-value=3.7e+02 Score=33.20 Aligned_cols=66 Identities=14% Similarity=0.010 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhhcc
Q 044163 92 TMGGIYFVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSS 164 (783)
Q Consensus 92 ~iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS 164 (783)
++-+-++....|++.|+..+.+ ..............-++.+.+.+.+. +.. +..++.+|.+++.=.
T Consensus 313 ~~llPl~~~~~G~k~di~~i~~-~~~~~~~i~~~~~~K~l~t~~~sl~~-k~p-----~~~~l~l~~lm~~kg 378 (769)
T KOG1650|consen 313 GLLLPLYFAISGLKTDISRINK-WGALIRTILIFGAVKLLSTLGTSLYC-KLP-----LRDSLALGLLMSTKG 378 (769)
T ss_pred HHHHHHHHHhhccceeHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHh-cCc-----hhHHHHHHHHHHhhh
Confidence 3445567777899999999988 22222222222333344444455433 322 477888888777544
No 159
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=38.83 E-value=91 Score=33.56 Aligned_cols=36 Identities=8% Similarity=0.175 Sum_probs=28.6
Q ss_pred EEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEee
Q 044163 612 NVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRIN 647 (783)
Q Consensus 612 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~ 647 (783)
+.++.|.||+|+--.|.++++.-...+..+.++++-
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~ID 56 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVD 56 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEe
Confidence 457889999999999999988865445677888863
No 160
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=37.84 E-value=2.4e+02 Score=31.17 Aligned_cols=87 Identities=16% Similarity=0.079 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHhcCCCCCch-----hHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHH
Q 044163 275 NYMIGAAMFGLVIPAGPPLG-----SALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVG 349 (783)
Q Consensus 275 ~~~lGaF~aGl~l~~~~~~~-----~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~ 349 (783)
++.+=+.++|+++.-.++.. +-+.+-++.+ .....|+=.+.+|+.+..........+......+++.++.-.+.
T Consensus 244 nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i 322 (385)
T PF03547_consen 244 NPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYL-GAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLI 322 (385)
T ss_pred CcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 45555556666665543222 4556666666 57789999999998887543311112222233455555555666
Q ss_pred HHHHHHhcCCChH
Q 044163 350 CILGLISFKASIR 362 (783)
Q Consensus 350 ~~l~~~~~~~~~~ 362 (783)
++.....++++..
T Consensus 323 ~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 323 GIGIVFLLGLDGD 335 (385)
T ss_pred HHHHHHHHCCCHH
Confidence 6666667776544
No 161
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=35.47 E-value=1.7e+02 Score=31.45 Aligned_cols=49 Identities=16% Similarity=0.202 Sum_probs=37.1
Q ss_pred HHHHHHHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 044163 93 MGGIYFVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLIISFLVAHMLR 141 (783)
Q Consensus 93 iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~ 141 (783)
+-.-|+-|..|-.+|++.+.+.+-..+.+|+..++++....+....++.
T Consensus 201 ~lIpFf~FaLGaginl~~i~~aGl~GIlLGl~v~~vtG~~~~~~dr~~~ 249 (314)
T TIGR00793 201 TLIPFFAFALGNTIDLGVIIQTGLLGILLGVSVIILTGIPLILADKFIG 249 (314)
T ss_pred eeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHHHhc
Confidence 3345788999999999999998888888888777666666666555553
No 162
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=34.21 E-value=2.2e+02 Score=27.91 Aligned_cols=92 Identities=22% Similarity=0.233 Sum_probs=49.9
Q ss_pred CccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEEE-E--ecChHHHHHHH
Q 044163 620 GPDDREAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQI-V--ANDTKQLVSAV 696 (783)
Q Consensus 620 G~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~-~--v~~~~e~~~~i 696 (783)
.+.|.|+++.|++|++ .+.+++++-+..+ .++..+++.... +-+++-..+. . -.+.+...+++
T Consensus 18 ~~~~~e~l~~A~~l~~-~~~~v~~v~~G~~-----------~~~~~~~~~~~~--Gad~v~~~~~~~~~~~~~~~~a~~l 83 (181)
T cd01985 18 NPLDLEAVEAALRLKE-YGGEVTALVIGPP-----------AAEVALREALAM--GADKVLLVEDPALAGYDPEATAKAL 83 (181)
T ss_pred CHhhHHHHHHHHHHhh-cCCeEEEEEECCh-----------HHHHHHHHHHHh--CCCEEEEEecCcccCCChHHHHHHH
Confidence 3778999999999987 5567777776432 111122222221 2233333221 0 11233344444
Q ss_pred Hhh--ccCCcEEEEcccCCC--CchhhhccCCC
Q 044163 697 RSL--ERSNDLVIVGRQQAF--SSQLEEEMRPW 725 (783)
Q Consensus 697 ~~~--~~~~DLvIVG~~~~~--~s~~~~gl~~W 725 (783)
.++ +.++|++++|++..+ ..+.+....+|
T Consensus 84 ~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~ 116 (181)
T cd01985 84 AALIKKEKPDLILAGATSIGKQLAPRVAALLGV 116 (181)
T ss_pred HHHHHHhCCCEEEECCcccccCHHHHHHHHhCC
Confidence 443 246999999999754 24555555555
No 163
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=33.98 E-value=4e+02 Score=26.11 Aligned_cols=90 Identities=16% Similarity=0.045 Sum_probs=50.5
Q ss_pred chhHHHHHHHHHHhcCCCCCch-hHHHHHHHHHHHHHHHHHHHHHhcccccccccc--hhhHHHHHHHHHHHHHHHHHHH
Q 044163 273 NSNYMIGAAMFGLVIPAGPPLG-SALVEKSELIITHFFLPFFYIRLGQLTDIHSIE--SWRSFLALELILVSAYLGKVVG 349 (783)
Q Consensus 273 G~~~~lGaF~aGl~l~~~~~~~-~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~--~~~~~~~~~~ii~~~~~~K~~~ 349 (783)
.+-..-|++++|+++....+.+ ..+......+.+++.+-+|...+|++.-...+. ....+...+ +-++..+.-.+.
T Consensus 22 ~LG~a~G~L~vgL~~G~~~~~~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~-~~~~i~~~~~~~ 100 (169)
T PF06826_consen 22 SLGAAGGVLFVGLILGALGRTGPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLL-LGVIITLVPLLI 100 (169)
T ss_pred eccccHHHHHHHHHHHHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHH
Confidence 3344557777777777652110 003344445567788889999999998765441 122233222 222233344555
Q ss_pred HHHHHH-hcCCChHH
Q 044163 350 CILGLI-SFKASIRN 363 (783)
Q Consensus 350 ~~l~~~-~~~~~~~~ 363 (783)
++..++ ++|+++-.
T Consensus 101 ~~~~~~~~~~l~~~~ 115 (169)
T PF06826_consen 101 ALVIGRYLFKLNPGI 115 (169)
T ss_pred HHHHHHHHcCCCHHH
Confidence 566666 88888654
No 164
>PRK09903 putative transporter YfdV; Provisional
Probab=33.34 E-value=6.4e+02 Score=27.13 Aligned_cols=135 Identities=7% Similarity=-0.028 Sum_probs=69.6
Q ss_pred hHHHHHHHHHHhcCCC-CCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 275 NYMIGAAMFGLVIPAG-PPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILG 353 (783)
Q Consensus 275 ~~~lGaF~aGl~l~~~-~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~ 353 (783)
+|.+=|.++|+++.-. -+..+.+.+-++.+ .+-..|+=...+|+++....+ ... +. .....+...+.-.+.+++.
T Consensus 173 nP~iia~~~gl~~~l~~i~lP~~i~~~l~~l-g~~~~PlaL~~iG~~L~~~~~-~~~-~~-~~~~~~~Kli~~P~i~~~~ 248 (314)
T PRK09903 173 EPVVWAPVLATILVLVGVKIPAAWDPTFNLI-AKANSGVAVFAAGLTLAAHKF-EFS-AE-IAYNTFLKLILMPLALLLV 248 (314)
T ss_pred chHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccc-ccc-HH-HHHHHHHHHHHHHHHHHHH
Confidence 4555566666655432 13445666666666 678899999999999876544 211 11 1122222333334444555
Q ss_pred HHhcCCChHHHHHHHHHh--hhhHHHHHHHHhhhcccCccchhhHHHHHHHHHHHHHhHHHHHHHhc
Q 044163 354 LISFKASIRNALLFSCFL--NIKGIIELMHFLRWRSRKYVDIQTFSELVLSNLVLTAIVTPLIAIFY 418 (783)
Q Consensus 354 ~~~~~~~~~~~l~lg~~m--~~rG~~~lii~~i~~~~gii~~~~f~~lv~~~vl~t~i~~pl~~~l~ 418 (783)
...++.+.... ....++ .|-+....+++ .+.|. |++.-+..+....+.++++-|+.-++.
T Consensus 249 ~~~~~l~~~~~-~v~vl~aa~P~a~~~~i~A---~~y~~-~~~~aa~~v~~sTlls~iTlpl~~~l~ 310 (314)
T PRK09903 249 GMACHLNSEHL-QMMVLAGALPPAFSGIIIA---SRFNV-YTRTGTASLAVSVLGFVVTAPLWIYVS 310 (314)
T ss_pred HHHcCCCcHHH-HHHHHHHcccHHHHHHHHH---HHHcc-cHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55667654332 222222 34455444443 34442 444444444433333566666665543
No 165
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=33.18 E-value=51 Score=35.60 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=36.1
Q ss_pred EEEecChHHHHHHHHhhc-cCCcEEEEcccCCCCchhhhccCCCCCCCccchhhh
Q 044163 683 QIVANDTKQLVSAVRSLE-RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGD 736 (783)
Q Consensus 683 e~~v~~~~e~~~~i~~~~-~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd 736 (783)
+.......|..+..+++. .+||++|++.+-|..+....||-+=-..| ||.||-
T Consensus 38 ~~~t~~~g~a~~~a~~a~~~~~D~via~GGDGTv~evingl~~~~~~~-LgilP~ 91 (301)
T COG1597 38 VRVTEEAGDAIEIAREAAVEGYDTVIAAGGDGTVNEVANGLAGTDDPP-LGILPG 91 (301)
T ss_pred EEEeecCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHhcCCCCc-eEEecC
Confidence 333444345666666654 46999999999988888888886643344 777763
No 166
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=32.44 E-value=3.4e+02 Score=26.51 Aligned_cols=86 Identities=16% Similarity=0.181 Sum_probs=54.6
Q ss_pred eccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEEEEecChHHHHHH
Q 044163 616 FFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQIVANDTKQLVSA 695 (783)
Q Consensus 616 ~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e~~~~ 695 (783)
+..||. ..-...+|+.|+++...++-++. +.. .++..+++.+++++.. ..+|.|..--+.|.+++.++
T Consensus 4 litGG~-gglg~~la~~La~~~~~~~il~~---r~~-----~~~~~~~~~i~~l~~~---g~~v~~~~~Dv~d~~~v~~~ 71 (181)
T PF08659_consen 4 LITGGL-GGLGQSLARWLAERGARRLILLG---RSG-----APSAEAEAAIRELESA---GARVEYVQCDVTDPEAVAAA 71 (181)
T ss_dssp EEETTT-SHHHHHHHHHHHHTT-SEEEEEE---SSG-----GGSTTHHHHHHHHHHT---T-EEEEEE--TTSHHHHHHH
T ss_pred EEECCc-cHHHHHHHHHHHHcCCCEEEEec---cCC-----CccHHHHHHHHHHHhC---CCceeeeccCccCHHHHHHH
Confidence 344554 55788999999999988888777 211 1122234678888774 35888888778899999999
Q ss_pred HHhhccCC---cEEEEcccCC
Q 044163 696 VRSLERSN---DLVIVGRQQA 713 (783)
Q Consensus 696 i~~~~~~~---DLvIVG~~~~ 713 (783)
+.+...++ |-||-.+...
T Consensus 72 ~~~~~~~~~~i~gVih~ag~~ 92 (181)
T PF08659_consen 72 LAQLRQRFGPIDGVIHAAGVL 92 (181)
T ss_dssp HHTSHTTSS-EEEEEE-----
T ss_pred HHHHHhccCCcceeeeeeeee
Confidence 98876555 6688777653
No 167
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=32.16 E-value=8.9e+02 Score=28.90 Aligned_cols=16 Identities=25% Similarity=0.341 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 044163 228 FTIIVLRLMIEWIIRR 243 (783)
Q Consensus 228 ~~~~v~r~~~~~l~~r 243 (783)
...++.|.+..|+.++
T Consensus 581 tAi~vtr~l~~~~~~~ 596 (604)
T PRK12933 581 TGIFASRALINLVYGR 596 (604)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 3556677777766554
No 168
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=32.16 E-value=2.1e+02 Score=27.92 Aligned_cols=57 Identities=18% Similarity=0.337 Sum_probs=39.5
Q ss_pred EEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhc
Q 044163 612 NVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASN 673 (783)
Q Consensus 612 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 673 (783)
+|+|.+-||.|.--++.++.+...+.+.+++++++-.... .+...+.+.++++..+.
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~~~-----~~~~~~~~~~~~~~~~~ 57 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHGLR-----PESDEEAAFVADLCAKL 57 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCC-----chHHHHHHHHHHHHHHc
Confidence 5789999999999999999998876677888888743211 00112335566666654
No 169
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=29.30 E-value=1.1e+02 Score=33.12 Aligned_cols=36 Identities=8% Similarity=0.134 Sum_probs=29.3
Q ss_pred cEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEe
Q 044163 611 YNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRI 646 (783)
Q Consensus 611 ~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~ 646 (783)
.++++.|.||+|+--.|.+|.+.....+..+.++++
T Consensus 38 ~~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~V 73 (312)
T PRK12563 38 SKPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHV 73 (312)
T ss_pred CCcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEe
Confidence 467899999999999999999887555566778875
No 170
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=28.34 E-value=1.3e+02 Score=35.11 Aligned_cols=71 Identities=15% Similarity=0.239 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhccccccccc-chhhHHHH-HHH-----HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHH
Q 044163 306 THFFLPFFYIRLGQLTDIHSI-ESWRSFLA-LEL-----ILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGIIE 378 (783)
Q Consensus 306 ~~~f~PlFFv~~G~~~dl~~l-~~~~~~~~-~~~-----ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~ 378 (783)
...++|---.-.|.+++-..+ .+...... .+. ..++....|+.+. .....+++++|++.+|.+.++-=-+.
T Consensus 102 f~vLLPpiif~sgy~l~k~~fF~n~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDPVt 179 (575)
T KOG1965|consen 102 FLVLLPPIIFNSGYSLKKKQFFRNIGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDPVT 179 (575)
T ss_pred HHHhhchhhhcccceechhhhhhhhHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCchH
Confidence 445666655567888886655 22211111 100 0112222333332 22345799999999999888754444
No 171
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=28.20 E-value=6.1e+02 Score=25.27 Aligned_cols=84 Identities=12% Similarity=0.195 Sum_probs=40.3
Q ss_pred chhHHHHHHHHHHhcCCCCCchhHHHHHHHH-----H-HHHHHHHHHHHHhcccc-------c---ccccch-hhHHHHH
Q 044163 273 NSNYMIGAAMFGLVIPAGPPLGSALVEKSEL-----I-ITHFFLPFFYIRLGQLT-------D---IHSIES-WRSFLAL 335 (783)
Q Consensus 273 G~~~~lGaF~aGl~l~~~~~~~~~l~~kl~~-----~-~~~~f~PlFFv~~G~~~-------d---l~~l~~-~~~~~~~ 335 (783)
-...+++++++=++...+ .+++.....+-. + ..+-++|+||..-...- + .+.+.. ...| ..
T Consensus 84 ~~~~ii~gliaeli~~~g-~Yks~~~~~ia~~~~~~~~~~g~~~p~~~~~d~y~~~~~~~~~~~~y~~~~~~~~~~~-~~ 161 (189)
T TIGR02185 84 IISSIIGGLLADIIASTG-GYKNKRKVTIAYVLFFLLVAMGPILPIWLFKDEYIAFFAARGDSAEYIDQYIKYVSAI-WA 161 (189)
T ss_pred HHHHHHHHHHHHHHHHhC-CcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCcHHHHHHHHHhcchH-HH
Confidence 334566677777777654 344332222221 1 12345788774322211 1 111101 1123 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 044163 336 ELILVSAYLGKVVGCILGLISFK 358 (783)
Q Consensus 336 ~~ii~~~~~~K~~~~~l~~~~~~ 358 (783)
.+.++..+++=++|++++-+.++
T Consensus 162 ~~~~~~t~v~~~iG~~iG~kllk 184 (189)
T TIGR02185 162 VIMIVLTAVAGIAGVLIGKKLLK 184 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566667888888877654
No 172
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=27.89 E-value=2.3e+02 Score=27.45 Aligned_cols=37 Identities=14% Similarity=0.343 Sum_probs=30.6
Q ss_pred EEEEeccCCccHHHHHHHHHHHhcCC--CeEEEEEEeee
Q 044163 612 NVAVFFIGGPDDREAMALVSRMSGHP--GVSITVFRINL 648 (783)
Q Consensus 612 ~I~v~f~GG~ddreAL~~a~rma~~~--~~~ltv~~~~~ 648 (783)
||+|.+-||.|.--.+.++.+..++. +.+++.+++-.
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~ 39 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDE 39 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEEC
Confidence 58999999999999999998877654 77888888753
No 173
>PRK01658 holin-like protein; Validated
Probab=27.84 E-value=4.9e+02 Score=24.07 Aligned_cols=17 Identities=29% Similarity=0.636 Sum_probs=9.8
Q ss_pred HHHHHH--Hhccccccccc
Q 044163 310 LPFFYI--RLGQLTDIHSI 326 (783)
Q Consensus 310 ~PlFFv--~~G~~~dl~~l 326 (783)
+|+||+ .+|.--..+.+
T Consensus 66 m~llFVPa~VGi~~~~~ll 84 (122)
T PRK01658 66 LPLFFIPSAVGVMNYGDFL 84 (122)
T ss_pred HHHHHHHhhhHHHHhHHHH
Confidence 677786 45554445555
No 174
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=27.74 E-value=2.2e+02 Score=28.54 Aligned_cols=71 Identities=13% Similarity=0.113 Sum_probs=47.3
Q ss_pred cEEEEeccCCccHH---HHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEEEEec
Q 044163 611 YNVAVFFIGGPDDR---EAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQIVAN 687 (783)
Q Consensus 611 ~~I~v~f~GG~ddr---eAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~ 687 (783)
.++++++-.|.+.+ .....|.+||+++++++..+.+.++ |++.++...... +++ |-+ ..
T Consensus 112 ~kvvILLTDG~n~~~~i~P~~aAa~lA~~~gV~iytIgiG~~------------d~~~l~~iA~~t--gG~--~F~--A~ 173 (191)
T cd01455 112 EAIVIVLSDANLERYGIQPKKLADALAREPNVNAFVIFIGSL------------SDEADQLQRELP--AGK--AFV--CM 173 (191)
T ss_pred CcEEEEEeCCCcCCCCCChHHHHHHHHHhCCCEEEEEEecCC------------CHHHHHHHHhCC--CCc--EEE--eC
Confidence 46777777777644 3556678899999999999998642 345566655532 222 434 67
Q ss_pred ChHHHHHHHHhh
Q 044163 688 DTKQLVSAVRSL 699 (783)
Q Consensus 688 ~~~e~~~~i~~~ 699 (783)
|.+|+.++.+++
T Consensus 174 d~~~L~~iy~~I 185 (191)
T cd01455 174 DTSELPHIMQQI 185 (191)
T ss_pred CHHHHHHHHHHH
Confidence 878887777654
No 175
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=27.62 E-value=1.8e+02 Score=27.42 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=44.8
Q ss_pred CChHHHHHHHHHhcCCCEEEEccc--CCCcccCCCcchhHHHHHHhccC-CCceEEEecCCC
Q 044163 539 DTMHQSICRLLKDKFIPLILVPLF--PNGEVQGPNGTLHNFNINILHYA-PCTVGIFVDRGL 597 (783)
Q Consensus 539 ~~m~~dI~~~A~e~~a~lIIlp~h--~~g~~~~~~~~~~~~~~~Vl~~A-pCsVgIlVdRg~ 597 (783)
....+.+.++++|++++.||+|.. .||.........+.+.+++-++. +++|- ++|-..
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~ipV~-~~DEr~ 97 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNMDGSESEQARRVRKFAEELKKRFPGIPVI-LVDERL 97 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBCTSSC-CCHHHHHHHHHHHHHHH-TSEEE-EEECSC
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCcccCCCccHHHHHHHHHHHHHHHhcCCCcEE-EECCCh
Confidence 578899999999999999999876 67776545566788888888886 78874 465543
No 176
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=26.71 E-value=6.1e+02 Score=27.66 Aligned_cols=67 Identities=9% Similarity=0.012 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccCccchhhHHHHHH
Q 044163 335 LELILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRKYVDIQTFSELVL 401 (783)
Q Consensus 335 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~gii~~~~f~~lv~ 401 (783)
++..+++.++.-+++-.+.-++.+++..|+..++..-.....++++.+.--++..-+.-+-|...++
T Consensus 57 ~~~~~~lg~liPl~~~~iLr~~~~l~~~daaAiAAhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~ 123 (327)
T PF05982_consen 57 LLAAVLLGILIPLIAFPILRRLGKLDRADAAAIAAHYGSVSAVTFAAALAFLESQGISYEGYMVALL 123 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCChhhHHHHHHHcCchHHHHHHHHHHHHHHCCCCccccHHHHH
Confidence 3444444555555555555666899999999998877777777777776666665566555554433
No 177
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=25.98 E-value=1.3e+02 Score=32.66 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=19.8
Q ss_pred ChHHHHHHHHhhc-----cCCcEEEEcccCCC
Q 044163 688 DTKQLVSAVRSLE-----RSNDLVIVGRQQAF 714 (783)
Q Consensus 688 ~~~e~~~~i~~~~-----~~~DLvIVG~~~~~ 714 (783)
...+++++|+... .+||++|++|+.|.
T Consensus 56 A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 56 AAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred hHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 3456777777654 25899999999875
No 178
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=25.77 E-value=6.7e+02 Score=24.91 Aligned_cols=125 Identities=16% Similarity=0.340 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHH--HhchhHHHHHHHHHHhcCCCCCchhHHHHHHHHH--
Q 044163 229 TIIVLRLMIEWIIRRTPERKPVKDVYIIAIMIGAITLGFIYE--GLNSNYMIGAAMFGLVIPAGPPLGSALVEKSELI-- 304 (783)
Q Consensus 229 ~~~v~r~~~~~l~~r~~~~~~~~e~~~~~vl~~~l~~~~lae--~lG~~~~lGaF~aGl~l~~~~~~~~~l~~kl~~~-- 304 (783)
..++..+..-.+..|.++. -..++..++..++.....+ ..-...+++++++=++...+ .+++.-...+...
T Consensus 40 ~ali~g~vyml~~~KV~K~----G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~g-~y~~~~~~~iay~vf 114 (186)
T PF09605_consen 40 AALICGIVYMLMVAKVPKR----GAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKKG-GYKSKKRNTIAYAVF 114 (186)
T ss_pred HHHHHHHHHHHHHHHcCch----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHH
Confidence 3344455555566776541 2223333222222222222 33445677788888888655 4444332222211
Q ss_pred ---HHHHHHHHHHHHhccc---------ccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 044163 305 ---ITHFFLPFFYIRLGQL---------TDI-HSIESWRSFLALELILVSAYLGKVVGCILGLISFK 358 (783)
Q Consensus 305 ---~~~~f~PlFFv~~G~~---------~dl-~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~ 358 (783)
..+-++|++|..-... -+. +.+.+..+.+..+++++..+++=++|++++.+..+
T Consensus 115 ~~~~~g~~~p~~~~~~~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk 181 (186)
T PF09605_consen 115 SLGYMGPYLPIWFMRDAYLAAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK 181 (186)
T ss_pred HHHHHhhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1256788877643332 110 11101111123455555667777888888776653
No 179
>PRK01821 hypothetical protein; Provisional
Probab=25.69 E-value=5.7e+02 Score=24.08 Aligned_cols=17 Identities=6% Similarity=0.424 Sum_probs=9.9
Q ss_pred HHHHHH--Hhccccccccc
Q 044163 310 LPFFYI--RLGQLTDIHSI 326 (783)
Q Consensus 310 ~PlFFv--~~G~~~dl~~l 326 (783)
+|+||+ .+|.-...+.+
T Consensus 71 m~LfFVPa~VGim~~~~ll 89 (133)
T PRK01821 71 MALLFVPIGVGVMQYYDLL 89 (133)
T ss_pred HHHHHhhhHHHHHHHHHHH
Confidence 577886 45554445555
No 180
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=25.26 E-value=2.2e+02 Score=30.72 Aligned_cols=70 Identities=14% Similarity=0.230 Sum_probs=46.6
Q ss_pred hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 044163 59 SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLIISFLVAH 138 (783)
Q Consensus 59 aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~ 138 (783)
.|+++|. +.+++++.+-| -..+-+-|+-|..|-.+|++.+.+.+-..+.+++..+++.....+....
T Consensus 180 iG~iLGN----LD~~~r~fl~~---------~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~~~~~dr 246 (314)
T PF03812_consen 180 IGMILGN----LDPDFRKFLAP---------GVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGIPLYLADR 246 (314)
T ss_pred HHHHHhc----CCHHHHHHHhc---------CCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhHHHHHHHH
Confidence 7787776 23443333322 2223345778999999999999999988888888777666555555555
Q ss_pred Hhh
Q 044163 139 MLR 141 (783)
Q Consensus 139 ~l~ 141 (783)
++.
T Consensus 247 ~i~ 249 (314)
T PF03812_consen 247 LIL 249 (314)
T ss_pred HHc
Confidence 543
No 181
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=25.04 E-value=1.4e+02 Score=26.59 Aligned_cols=38 Identities=13% Similarity=0.268 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhhcccc-ccchhhHHHHHHHHHhh
Q 044163 125 VLLVPLIISFLVAHMLRDHVP-RINLKRFYFYISFLASR 162 (783)
Q Consensus 125 ~~lip~~~g~~~~~~l~~~~~-~~~~~~~~l~lg~~ls~ 162 (783)
++++|.++|..++.++...++ ++......+++|++.+.
T Consensus 51 ~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~ 89 (100)
T TIGR02230 51 SVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGC 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHH
Confidence 356788888889988887665 23222334555555543
No 182
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=24.83 E-value=2e+02 Score=28.02 Aligned_cols=74 Identities=9% Similarity=0.239 Sum_probs=42.2
Q ss_pred EEEEeccCCc-cH-HHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEEEEecCh
Q 044163 612 NVAVFFIGGP-DD-REAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQIVANDT 689 (783)
Q Consensus 612 ~I~v~f~GG~-dd-reAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~ 689 (783)
++++++-.|. ++ .++++.|.++. +.++++.++.+... .|++.++.+......+.+... ....+|
T Consensus 110 ~~villTDG~~~~~~~~~~~a~~l~-~~gv~v~~igiG~~-----------~d~~~l~~ia~~~~~~~~~~~--~~~~~~ 175 (186)
T cd01471 110 QLVIIMTDGIPDSKFRTLKEARKLR-ERGVIIAVLGVGQG-----------VNHEENRSLVGCDPDDSPCPL--YLQSSW 175 (186)
T ss_pred eEEEEEccCCCCCCcchhHHHHHHH-HCCCEEEEEEeehh-----------hCHHHHHHhcCCCCCCCCCCe--eecCCH
Confidence 3444444444 33 45677777775 56899999997532 233556655543212222222 236789
Q ss_pred HHHHHHHHhh
Q 044163 690 KQLVSAVRSL 699 (783)
Q Consensus 690 ~e~~~~i~~~ 699 (783)
+++...++.+
T Consensus 176 ~~~~~~~~~~ 185 (186)
T cd01471 176 SEVQNVIKPF 185 (186)
T ss_pred HHHHHHhhcC
Confidence 9988887753
No 183
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=24.54 E-value=9.4e+02 Score=26.22 Aligned_cols=78 Identities=10% Similarity=0.033 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhccccccccc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHh---hhhHHHHHHHH
Q 044163 307 HFFLPFFYIRLGQLTDIHSI-ESWRSFLALELILVSAYLGKVVGCILGLISFKASIRNALLFSCFL---NIKGIIELMHF 382 (783)
Q Consensus 307 ~~f~PlFFv~~G~~~dl~~l-~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m---~~rG~~~lii~ 382 (783)
..++.+.|...|+.+...++ .....|...++..+..++.=.+.+++.++.+.+| ..+..|+.+ +|-|..+.++.
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~--~~l~~Gl~ll~~~Pggv~S~~~t 118 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLP--PELAVGLLLLGCCPGGVASNAMT 118 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHhHHheeeCCCchhHHHHH
Confidence 34455666678888887766 2334566566666666677777888888887755 445566554 56788887666
Q ss_pred hhhc
Q 044163 383 LRWR 386 (783)
Q Consensus 383 ~i~~ 386 (783)
.++.
T Consensus 119 ~lAk 122 (319)
T COG0385 119 YLAK 122 (319)
T ss_pred HHhc
Confidence 6654
No 184
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=24.25 E-value=5.5e+02 Score=28.64 Aligned_cols=31 Identities=13% Similarity=0.237 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhcCChHHHHHhhhhHHHHHH
Q 044163 93 MGGIYFVFIVTVKMDKAMILRTVKKTWNVSM 123 (783)
Q Consensus 93 iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~ 123 (783)
-|..+.|+..|.+.|++.+++..++...+++
T Consensus 117 ~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~l 147 (371)
T KOG2718|consen 117 PGLLSNMLSFGIKLDMDLFAGMIKRPTPLAL 147 (371)
T ss_pred cHHHHHHHHHhcCccHHHHhhHhhCCcceee
Confidence 6788899999999999999999888776544
No 185
>COG2431 Predicted membrane protein [Function unknown]
Probab=23.95 E-value=9e+02 Score=25.79 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHhhhcCC---hH--HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 044163 88 NTLATMGGIYFVFIVTVKMD---KA--MILRTVKKTWNVSMTVLLVPLIISFLVAHMLR 141 (783)
Q Consensus 88 ~~la~iGl~~llF~~Gle~d---~~--~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~ 141 (783)
+...+..+.+++|.+|.++. .. +.+ -.|+.+..+....+-..+.|.+.+.++.
T Consensus 131 ~~a~~~~L~~LlF~iGi~l~n~g~~~~~~~-Lnk~gl~l~~i~ilssliGG~iaa~~l~ 188 (297)
T COG2431 131 ENASEYLLYLLLFLIGIQLGNSGISLRQVL-LNKRGLILAFITLLSSLIGGLIAAFLLD 188 (297)
T ss_pred hhHHHHHHHHHHHHHHHHhccccchhhhHH-hccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45678999999999999886 22 222 2366676766666655555555555444
No 186
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=23.71 E-value=1.6e+02 Score=31.18 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.8
Q ss_pred HHHhchhHHHHHHHHHHhcCC
Q 044163 269 YEGLNSNYMIGAAMFGLVIPA 289 (783)
Q Consensus 269 ae~lG~~~~lGaF~aGl~l~~ 289 (783)
.++++.|+.+|+|+.|+.++-
T Consensus 58 ~~fFNT~p~~~~~I~Gi~~am 78 (264)
T PF03613_consen 58 MEFFNTEPFLGPFILGIVLAM 78 (264)
T ss_pred HHHHCCCChhhhHHHHHHHHH
Confidence 478999999999999999973
No 187
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=23.35 E-value=1.3e+03 Score=27.62 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 044163 220 GAVCALSIFTIIVLRLMIEWIIR 242 (783)
Q Consensus 220 ~~~i~f~~~~~~v~r~~~~~l~~ 242 (783)
++.++.+.++++++.|...|+..
T Consensus 420 lt~li~~~l~~~viGp~~~~i~~ 442 (631)
T PRK09765 420 LGTLGAGSLMLFVVGEPVAWINN 442 (631)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444445555555555543
No 188
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=23.15 E-value=1.5e+02 Score=27.20 Aligned_cols=42 Identities=12% Similarity=0.015 Sum_probs=25.9
Q ss_pred HHHHhhccCCcEEEEcccCCCCchhhhccCCCCCC---Cccchhhh
Q 044163 694 SAVRSLERSNDLVIVGRQQAFSSQLEEEMRPWVEY---EELGIIGD 736 (783)
Q Consensus 694 ~~i~~~~~~~DLvIVG~~~~~~s~~~~gl~~W~e~---~eLG~igd 736 (783)
+..++. .+||.+++..+-|..+....|+.+.... +.+|.||-
T Consensus 42 ~~~~~~-~~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~ 86 (124)
T smart00046 42 VIFRDL-PKFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPL 86 (124)
T ss_pred HHHhhc-CcCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCC
Confidence 334444 3578888777777777777777544322 55666663
No 189
>PRK11103 PTS system mannose-specific transporter subunit IID; Provisional
Probab=22.86 E-value=4.4e+02 Score=28.20 Aligned_cols=20 Identities=20% Similarity=0.433 Sum_probs=18.1
Q ss_pred HHHhchhHHHHHHHHHHhcC
Q 044163 269 YEGLNSNYMIGAAMFGLVIP 288 (783)
Q Consensus 269 ae~lG~~~~lGaF~aGl~l~ 288 (783)
.++++.|+.+|+|+.|+.++
T Consensus 69 l~fFNT~p~~~~~I~Gi~~a 88 (282)
T PRK11103 69 LEFFNTHPYVAAPILGVTLA 88 (282)
T ss_pred HHHHCCCchhhhHHHHHHHH
Confidence 35789999999999999988
No 190
>TIGR03248 galactar-dH20 galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0714).
Probab=22.86 E-value=3.6e+02 Score=31.30 Aligned_cols=106 Identities=15% Similarity=0.154 Sum_probs=54.3
Q ss_pred ccHHHHHHHHHHHhcCCCeE--EEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEEEEecC-hH-----HH
Q 044163 621 PDDREAMALVSRMSGHPGVS--ITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQIVAND-TK-----QL 692 (783)
Q Consensus 621 ~ddreAL~~a~rma~~~~~~--ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~-~~-----e~ 692 (783)
+|.+...+.-.-++.|||+- +.|+..--+. ..-+.+.++.+.+. ...++.+....-.. +. .-
T Consensus 173 ~d~~~~~r~L~g~~~hPNvgg~vLvvgLGCE~---------~~~~~l~~~i~~~~-~~~~v~~l~iQ~~g~g~~~ti~~g 242 (507)
T TIGR03248 173 PDAIVPIRTLRNIALNPNFGGEAMVVGLGCEK---------LQPERLLPEDTSPA-GLGDAGVYRLQDERHGFAAMIEAI 242 (507)
T ss_pred cHHHHHHHHHHHhccCCccCCEEEEEEeCccc---------CCHHHHHHhhcccc-CCCceEEEEEEccCCCHHHHHHHH
Confidence 33444566678889999996 5777753221 11124555553222 22456654321111 11 11
Q ss_pred HHHHHhhcc--------CCc--EEEEcccCCCCchhhhccCCCCCCCccchhhhhhhc
Q 044163 693 VSAVRSLER--------SND--LVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLAS 740 (783)
Q Consensus 693 ~~~i~~~~~--------~~D--LvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las 740 (783)
++.++++.. ..+ =.+||-.-|+ |--++|+ +..|.+|...|+|+.
T Consensus 243 ~~~~~~l~~~a~~~~R~~~pls~L~vGl~CGG-SD~~SGi---tANPavG~~sD~LV~ 296 (507)
T TIGR03248 243 MEMAERRLAKLNRRRRETVPASELVVGMQCGG-SDAFSGV---TANPAVGFAADLLVR 296 (507)
T ss_pred HHHHHHHHHHhhhCCcccCCHHHcEEEeecCC-CCCcccc---ccChHHHHHHHHHHH
Confidence 222222211 111 1444544443 3334444 678999999999999
No 191
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=22.77 E-value=1.2e+02 Score=28.69 Aligned_cols=55 Identities=16% Similarity=0.106 Sum_probs=40.5
Q ss_pred hHHHHHHHHHhcCCCEEEEccc--CCCcccCCCcchhHHHHHHhccCCCceEEEecCC
Q 044163 541 MHQSICRLLKDKFIPLILVPLF--PNGEVQGPNGTLHNFNINILHYAPCTVGIFVDRG 596 (783)
Q Consensus 541 m~~dI~~~A~e~~a~lIIlp~h--~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIlVdRg 596 (783)
..+.+.+++++++++.||+|.. .||.........+.+.+++-++-+++| .++|--
T Consensus 42 ~~~~l~~~i~~~~i~~iVvGlP~~~~G~~~~~~~~v~~f~~~L~~~~~~~v-~~~DEr 98 (138)
T PRK00109 42 DWDRLEKLIKEWQPDGLVVGLPLNMDGTEGPRTERARKFANRLEGRFGLPV-VLVDER 98 (138)
T ss_pred HHHHHHHHHHHhCCCEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCC
Confidence 4688999999999999999976 577654444567778888777667776 445543
No 192
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=22.70 E-value=1.2e+02 Score=28.24 Aligned_cols=34 Identities=26% Similarity=0.252 Sum_probs=27.2
Q ss_pred EEEEEEEcCCCChHHHHHHHHHhcCCCEEEEccc
Q 044163 529 VQPFIMISPYDTMHQSICRLLKDKFIPLILVPLF 562 (783)
Q Consensus 529 v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h 562 (783)
..-..++-|...||..|.++|++-++|++|-|..
T Consensus 71 a~lIYSiRPP~El~~~il~lA~~v~adlii~pL~ 104 (127)
T PF03686_consen 71 ADLIYSIRPPPELQPPILELAKKVGADLIIRPLG 104 (127)
T ss_dssp EEEEEEES--TTSHHHHHHHHHHHT-EEEEE-BT
T ss_pred CcEEEEeCCChHHhHHHHHHHHHhCCCEEEECCC
Confidence 4567888899999999999999999999999996
No 193
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=22.14 E-value=3.6e+02 Score=26.93 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=26.0
Q ss_pred cEEEEeccC-CccHHHHH-HHHHHHhcCCCeEEEEEEeeec
Q 044163 611 YNVAVFFIG-GPDDREAM-ALVSRMSGHPGVSITVFRINLE 649 (783)
Q Consensus 611 ~~I~v~f~G-G~ddreAL-~~a~rma~~~~~~ltv~~~~~~ 649 (783)
+||++.+.. +.+|...+ +.+++++++ ++++.++.|.+.
T Consensus 108 ~rivi~v~S~~~~d~~~i~~~~~~lkk~-~I~v~vI~~G~~ 147 (187)
T cd01452 108 QRIVAFVGSPIEEDEKDLVKLAKRLKKN-NVSVDIINFGEI 147 (187)
T ss_pred ceEEEEEecCCcCCHHHHHHHHHHHHHc-CCeEEEEEeCCC
Confidence 465443333 46666555 778888765 999999999754
No 194
>PRK07102 short chain dehydrogenase; Provisional
Probab=21.98 E-value=4.4e+02 Score=26.63 Aligned_cols=79 Identities=19% Similarity=0.265 Sum_probs=48.7
Q ss_pred CccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEEEEecChHHHHHHHHhh
Q 044163 620 GPDDREAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQIVANDTKQLVSAVRSL 699 (783)
Q Consensus 620 G~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~ 699 (783)
|....-..+++++++++ |.++.++. .+. ... ++..++.+.. ...++.+.+--+.|.+++.+.+.+.
T Consensus 8 Gas~giG~~~a~~l~~~-G~~Vi~~~---r~~-------~~~-~~~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~~~~~~ 73 (243)
T PRK07102 8 GATSDIARACARRYAAA-GARLYLAA---RDV-------ERL-ERLADDLRAR--GAVAVSTHELDILDTASHAAFLDSL 73 (243)
T ss_pred cCCcHHHHHHHHHHHhc-CCEEEEEe---CCH-------HHH-HHHHHHHHHh--cCCeEEEEecCCCChHHHHHHHHHH
Confidence 34567788889999976 66665554 110 111 1333444332 2345666665567778888888876
Q ss_pred ccCCcEEEEcccC
Q 044163 700 ERSNDLVIVGRQQ 712 (783)
Q Consensus 700 ~~~~DLvIVG~~~ 712 (783)
..+.|.++..++.
T Consensus 74 ~~~~d~vv~~ag~ 86 (243)
T PRK07102 74 PALPDIVLIAVGT 86 (243)
T ss_pred hhcCCEEEECCcC
Confidence 6668999987654
No 195
>PF11299 DUF3100: Protein of unknown function (DUF3100); InterPro: IPR021450 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=21.96 E-value=1e+02 Score=31.74 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=85.4
Q ss_pred chhHHHh-hheeecccccCCccccccccccccchHHHHHHHHHHHHHHHHHhhhcC--ChHHHHHhhhhHHHHHHHHHHH
Q 044163 52 LPVVMIQ-SGIIMGRSVFGKNKIYQDIMYRGREMLVVNTLATMGGIYFVFIVTVKM--DKAMILRTVKKTWNVSMTVLLV 128 (783)
Q Consensus 52 lP~l~~~-aGiilGPs~lg~~~~~~~~lfp~~~~~~l~~la~iGl~~llF~~Gle~--d~~~l~~~~~~~~~i~~~~~li 128 (783)
+|.+-.. .|++++|..++..+ .++..++.+.-+.+-.+++..++=-.|... +++++.+.+.. +.+-=.|=+-
T Consensus 22 lPmlyA~iig~~~~~~~~~~~~----k~~~~~~~~~a~~~~~~~ll~l~ak~g~~vGp~i~~i~~aGpA-LilQE~GnlG 96 (241)
T PF11299_consen 22 LPMLYALIIGMALGPQKLKPLK----KIISEKEMKFAGKLVGIALLPLIAKLGTTVGPNIPKILSAGPA-LILQEFGNLG 96 (241)
T ss_pred HHHHHHHHHHHHhcchhhcccc----cccCHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHhhHH-HHHHHhcchh
Confidence 5655554 89999998773222 223335566666666677777666667665 45666666543 3333333335
Q ss_pred HHHHHHHHHHHhhccccccchhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044163 129 PLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSSFAVVVDAISELKLLNSELGQLTMSTAVIHEILGWLNSILSQLMR 208 (783)
Q Consensus 129 p~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~ 208 (783)
+.+++.-++.+++.. .++ +|...|+.==|-++-+-..+| ++|+.||=+++.=++.-+++-+.++++.++.
T Consensus 97 TillaLPiAllLGlk-------REa--IGat~SI~REp~laiI~ekYG-ldSpEgrGVl~~Yi~GTvfGtiffsllas~~ 166 (241)
T PF11299_consen 97 TILLALPIALLLGLK-------REA--IGATFSIGREPNLAIISEKYG-LDSPEGRGVLGVYIIGTVFGTIFFSLLASLL 166 (241)
T ss_pred hHHHHhHHHHHhccc-------HHh--hcceeecccCcceeeeehhcC-CCCccccceEEEeeehhhHHHHHHHHHHHHH
Confidence 556666666555432 232 555555532222222335677 6999999888888888888888877776643
No 196
>PRK12911 bifunctional preprotein translocase subunit SecD/SecF; Reviewed
Probab=21.65 E-value=1.9e+03 Score=28.94 Aligned_cols=16 Identities=0% Similarity=0.204 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 044163 228 FTIIVLRLMIEWIIRR 243 (783)
Q Consensus 228 ~~~~v~r~~~~~l~~r 243 (783)
..+++.|.+..++.++
T Consensus 1049 tALfVtP~Ll~l~l~~ 1064 (1403)
T PRK12911 1049 TALFMTKFFFMIWMNK 1064 (1403)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 3445566666655544
No 197
>PF13829 DUF4191: Domain of unknown function (DUF4191)
Probab=21.51 E-value=2.3e+02 Score=29.09 Aligned_cols=49 Identities=14% Similarity=0.201 Sum_probs=33.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHHHhhcc
Q 044163 109 AMILRTVKKTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFLASRSS 164 (783)
Q Consensus 109 ~~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ls~TS 164 (783)
+.-++..++...+-++.++.|.+++.+++++++. |...+++|+.+....
T Consensus 18 ~~trk~dp~l~~~ml~a~l~~~~v~v~ig~l~~~-------~~~~~i~gi~~g~l~ 66 (224)
T PF13829_consen 18 KMTRKEDPKLPWLMLGAFLGPIAVFVLIGLLFGS-------WWYWLIIGILLGLLA 66 (224)
T ss_pred HHHHHHCcchHHHHHHHHHHHHHHHHHHHHHHcc-------HHHHHHHHHHHHHHH
Confidence 4456666777777788888898888888887763 234555666555443
No 198
>KOG2575 consensus Glucosyltransferase - Alg6p [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=21.49 E-value=1.2e+03 Score=26.34 Aligned_cols=149 Identities=20% Similarity=0.225 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHH
Q 044163 261 GAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILV 340 (783)
Q Consensus 261 ~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~ 340 (783)
+-+.++.++..+.-..++|++.+-+++.-. ++ | --.-.|+|+...| +..-..+ . ... .-++.+.
T Consensus 198 LGl~~~ai~~ll~~~~~~as~~F~LAlnyK-----QM----e---LY~A~pfF~fLLg-~c~k~k~-~-~~f-~ri~~ia 261 (510)
T KOG2575|consen 198 LGLTLYAIAALLKNFYVLASVLFVLALNYK-----QM----E---LYHALPFFAFLLG-SCLKPKL-F-NSF-ARIIKIA 261 (510)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhHH-----HH----H---HHhchHHHHHHHH-HHhcccc-h-HHH-HHHHHHH
Confidence 335566677777778899999998888643 11 1 2345677777888 5554444 2 112 2344445
Q ss_pred HHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHhhhcccC-------ccchhhHHHHHHHHHHHHHhHHHH
Q 044163 341 SAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGIIELMHFLRWRSRK-------YVDIQTFSELVLSNLVLTAIVTPL 413 (783)
Q Consensus 341 ~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~i~~~~g-------ii~~~~f~~lv~~~vl~t~i~~pl 413 (783)
+++++-++.++++-...+-...+.+. =+.=-.||.+|==+|+.+-... +...+....+.++..+ ....|..
T Consensus 262 ~~Vv~TF~iiw~P~~~~~~~~~qvl~-RlFPf~RGlfEDKVANfWCt~n~~~K~k~~ft~q~~~~iSl~~Tl-i~~LPs~ 339 (510)
T KOG2575|consen 262 LAVVGTFVIIWLPFLLSGDTALQVLH-RLFPFARGLFEDKVANFWCTFNVFLKIKELFTQQQLQVISLAATL-IGSLPSM 339 (510)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHH-HhCchhcchhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH-HHHhHHH
Confidence 55677788888876666633333221 1222458999988898886543 3344444444333333 2345777
Q ss_pred HHHhccccchhhhh
Q 044163 414 IAIFYKPQRRLESI 427 (783)
Q Consensus 414 ~~~l~~~~~~~~~~ 427 (783)
+....+|+++...+
T Consensus 340 v~l~L~P~~~~f~~ 353 (510)
T KOG2575|consen 340 VVLFLRPTNKGFLY 353 (510)
T ss_pred HHHhhcccccchhh
Confidence 88888888885544
No 199
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=21.16 E-value=1.1e+03 Score=25.85 Aligned_cols=76 Identities=16% Similarity=0.261 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHH
Q 044163 254 YIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSF 332 (783)
Q Consensus 254 ~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~ 332 (783)
.+++-++...+++.+. =.-.+.+|.+++|-.+.+.. .-+++.+..+.-...+.--+.=..+|...+-+.+.+++++
T Consensus 194 kiiFpivv~~~~~ll~--P~a~pLig~Lm~Gnl~rEsg-v~~rLs~taqn~l~nivTi~LGl~vGat~~a~~fL~~~tl 269 (360)
T PF03977_consen 194 KIIFPIVVTILVGLLL--PSAAPLIGMLMFGNLLRESG-VVERLSKTAQNELMNIVTIFLGLTVGATMTAETFLNPQTL 269 (360)
T ss_pred HHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHhcCHHHH
Confidence 3555555555555542 23468899999999999873 2333333333222222222223567887776655355544
No 200
>PRK13057 putative lipid kinase; Reviewed
Probab=21.09 E-value=1.3e+02 Score=32.13 Aligned_cols=53 Identities=23% Similarity=0.219 Sum_probs=30.0
Q ss_pred EEEEEecChHHHHHHHHhhccCCcEEEEcccCCCCchhhhccCCCCCCCccchhh
Q 044163 681 CRQIVANDTKQLVSAVRSLERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIG 735 (783)
Q Consensus 681 ~~e~~v~~~~e~~~~i~~~~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~ig 735 (783)
|.....+...+..+..++...++|.+|+.-+-|+......|+.+. .+.||.||
T Consensus 29 ~~~~~t~~~~~a~~~~~~~~~~~d~iiv~GGDGTv~~v~~~l~~~--~~~lgiiP 81 (287)
T PRK13057 29 LVEPPAEDPDDLSEVIEAYADGVDLVIVGGGDGTLNAAAPALVET--GLPLGILP 81 (287)
T ss_pred EEEEecCCHHHHHHHHHHHHcCCCEEEEECchHHHHHHHHHHhcC--CCcEEEEC
Confidence 333334445555555555555677777776666666666666542 34466655
No 201
>COG2431 Predicted membrane protein [Function unknown]
Probab=21.03 E-value=1e+03 Score=25.38 Aligned_cols=46 Identities=7% Similarity=0.160 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHh
Q 044163 338 ILVSAYLGKVVGCILGLISFKASIRNALLFSCFLNIKGIIELMHFL 383 (783)
Q Consensus 338 ii~~~~~~K~~~~~l~~~~~~~~~~~~l~lg~~m~~rG~~~lii~~ 383 (783)
.-+..+++-.+++.+.+.+.++|+.+++.++.++.=.......++.
T Consensus 168 l~~i~ilssliGG~iaa~~l~lpl~~~lAmasG~GWYSlsG~ll~~ 213 (297)
T COG2431 168 LAFITLLSSLIGGLIAAFLLDLPLTTGLAMASGFGWYSLSGILLTE 213 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccchhhhhhHHHhc
Confidence 3344556788888888899999999999998877666666666655
No 202
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=20.76 E-value=9.4e+02 Score=24.85 Aligned_cols=58 Identities=19% Similarity=0.183 Sum_probs=36.6
Q ss_pred chHHHHHHHHHHHHHHHHHhhhcCChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Q 044163 83 EMLVVNTLATMGGIYFVFIVTVKMDKAMILRTVKKTWNVSMTVLLVPLIISFLVAHMLRD 142 (783)
Q Consensus 83 ~~~~l~~la~iGl~~llF~~Gle~d~~~l~~~~~~~~~i~~~~~lip~~~g~~~~~~l~~ 142 (783)
+.++++.+ +|-.-.-|..-+-=+++.+||+++..+...+.|..+..+.+..++.+++.
T Consensus 60 g~~~i~~l--LgPAtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~~ai~s~~llak~~g~ 117 (230)
T COG1346 60 GGQWINFL--LGPATVALAVPLYKQRHLIKRHWKPILAGVLVGSVVAIISGVLLAKLFGL 117 (230)
T ss_pred ccHHHHHH--HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45555554 33344555566666777888888877766666666666666666666653
No 203
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=20.52 E-value=69 Score=36.21 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=21.8
Q ss_pred ChHHHHHHHHhhc--cCCcEEEEcccCCC
Q 044163 688 DTKQLVSAVRSLE--RSNDLVIVGRQQAF 714 (783)
Q Consensus 688 ~~~e~~~~i~~~~--~~~DLvIVG~~~~~ 714 (783)
.+.|++++|+... +++|++||||+.|.
T Consensus 177 A~~eIv~aI~~an~~~~~DvlIVaRGGGS 205 (440)
T COG1570 177 AAEEIVEAIERANQRGDVDVLIVARGGGS 205 (440)
T ss_pred cHHHHHHHHHHhhccCCCCEEEEecCcch
Confidence 4578888888764 45899999999875
No 204
>COG0239 CrcB Integral membrane protein possibly involved in chromosome condensation [Cell division and chromosome partitioning]
Probab=20.31 E-value=6.6e+02 Score=23.40 Aligned_cols=74 Identities=15% Similarity=0.100 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCC---CchhHHHHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 277 MIGAAMFGLVIPAGP---PLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILG 353 (783)
Q Consensus 277 ~lGaF~aGl~l~~~~---~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~ 353 (783)
++|+|+.|+...-.. +..+.+.- .++.+|+ --|=.++-++.|.-.+.....+..+...+++.+++-++++++.
T Consensus 43 v~GsFllG~~~~~~~~~~~~~~~~~~---~l~tGfl-GglTTFSTfs~E~~~L~~~~~~~~a~~yi~~sv~~gl~a~~lG 118 (126)
T COG0239 43 VVGSFLLGFLTALFAVRLISSEDWRL---LLGTGFL-GGLTTFSTFSLETVSLLQEGQYLLALAYILLSVLLGLLAVFLG 118 (126)
T ss_pred HHHHHHHHHHHHHHhccCCCcHHHHH---HHHHHHc-cchhhHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777665331 11111211 1223332 2334445555555444121233344555555555555555554
Q ss_pred H
Q 044163 354 L 354 (783)
Q Consensus 354 ~ 354 (783)
.
T Consensus 119 ~ 119 (126)
T COG0239 119 L 119 (126)
T ss_pred H
Confidence 3
Done!