Query 044163
Match_columns 783
No_of_seqs 324 out of 1898
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 21:01:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044163.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044163hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 5.5E-25 1.9E-29 238.7 8.4 302 86-418 59-384 (388)
2 3mt0_A Uncharacterized protein 99.7 1.3E-15 4.4E-20 161.9 23.0 253 446-757 8-278 (290)
3 3olq_A Universal stress protei 99.7 1.2E-15 4.1E-20 164.2 17.5 276 445-757 7-307 (319)
4 3loq_A Universal stress protei 99.6 3.4E-16 1.2E-20 166.7 11.8 266 446-757 23-292 (294)
5 3cis_A Uncharacterized protein 99.6 3.5E-15 1.2E-19 160.1 18.0 276 445-755 19-306 (309)
6 3ab8_A Putative uncharacterize 99.6 9.4E-15 3.2E-19 153.2 16.4 256 447-754 2-268 (268)
7 3s3t_A Nucleotide-binding prot 98.8 1.1E-08 3.7E-13 96.2 9.2 137 446-592 6-145 (146)
8 3fdx_A Putative filament prote 98.8 2.6E-08 8.9E-13 93.2 10.9 138 446-592 2-142 (143)
9 1mjh_A Protein (ATP-binding do 98.8 5.6E-08 1.9E-12 93.1 12.5 138 446-592 6-157 (162)
10 3hgm_A Universal stress protei 98.7 1.2E-08 4.3E-13 95.8 7.5 137 446-591 3-146 (147)
11 3dlo_A Universal stress protei 98.7 3.8E-08 1.3E-12 94.1 10.1 130 445-592 24-154 (155)
12 2dum_A Hypothetical protein PH 98.7 7.7E-08 2.6E-12 93.0 11.3 138 446-592 6-154 (170)
13 3tnj_A Universal stress protei 98.7 7.2E-08 2.5E-12 91.0 9.9 139 445-592 6-145 (150)
14 1tq8_A Hypothetical protein RV 98.6 8.1E-08 2.8E-12 92.6 10.1 138 444-592 16-156 (163)
15 2z08_A Universal stress protei 98.6 6.3E-08 2.2E-12 90.0 8.9 133 446-592 3-136 (137)
16 3fg9_A Protein of universal st 98.6 3.2E-08 1.1E-12 94.3 6.9 138 444-592 14-155 (156)
17 2gm3_A Unknown protein; AT3G01 98.6 1.4E-07 4.9E-12 91.6 11.3 142 445-593 5-162 (175)
18 3idf_A USP-like protein; unive 98.6 8.5E-08 2.9E-12 89.1 8.2 132 447-592 3-137 (138)
19 3s3t_A Nucleotide-binding prot 98.6 2.7E-07 9.3E-12 86.5 11.0 128 609-754 4-146 (146)
20 1jmv_A USPA, universal stress 98.5 3E-07 1E-11 85.7 9.8 131 446-592 3-136 (141)
21 3idf_A USP-like protein; unive 98.5 5.3E-07 1.8E-11 83.6 10.9 125 611-754 2-138 (138)
22 3dlo_A Universal stress protei 98.4 2.6E-07 9E-12 88.1 7.2 128 610-754 24-155 (155)
23 3hgm_A Universal stress protei 98.4 3.5E-07 1.2E-11 85.7 7.6 126 610-753 2-147 (147)
24 2z08_A Universal stress protei 98.4 9.5E-07 3.3E-11 81.9 10.2 125 610-754 2-137 (137)
25 3tnj_A Universal stress protei 98.4 1E-06 3.4E-11 83.0 10.1 127 610-756 6-148 (150)
26 1mjh_A Protein (ATP-binding do 98.4 1.2E-06 4.2E-11 83.6 10.4 129 610-756 5-160 (162)
27 2dum_A Hypothetical protein PH 98.4 2.4E-06 8E-11 82.4 12.5 131 610-756 5-157 (170)
28 3fdx_A Putative filament prote 98.3 1.6E-06 5.4E-11 80.8 9.6 125 611-754 2-143 (143)
29 3fg9_A Protein of universal st 98.3 1.1E-06 3.8E-11 83.4 7.7 128 609-754 14-156 (156)
30 1tq8_A Hypothetical protein RV 98.3 1.7E-06 5.7E-11 83.2 8.8 130 609-757 16-160 (163)
31 1q77_A Hypothetical protein AQ 98.2 3.8E-06 1.3E-10 77.8 10.0 127 446-591 5-136 (138)
32 1jmv_A USPA, universal stress 98.2 7.1E-06 2.4E-10 76.2 11.3 125 610-756 2-139 (141)
33 3olq_A Universal stress protei 98.0 8.5E-06 2.9E-10 86.8 9.1 148 444-598 155-309 (319)
34 3mt0_A Uncharacterized protein 98.0 8.4E-06 2.9E-10 85.9 8.4 134 444-592 133-274 (290)
35 2gm3_A Unknown protein; AT3G01 98.0 2.7E-05 9.1E-10 75.3 10.8 131 609-756 4-164 (175)
36 1q77_A Hypothetical protein AQ 98.0 2.9E-05 9.9E-10 71.8 9.9 117 609-754 3-138 (138)
37 3ab8_A Putative uncharacterize 97.9 1.1E-05 3.6E-10 83.8 6.9 129 611-756 1-150 (268)
38 3loq_A Universal stress protei 97.9 1.9E-05 6.6E-10 83.2 8.3 120 444-592 169-288 (294)
39 3cis_A Uncharacterized protein 97.9 1.7E-05 5.7E-10 84.4 7.1 130 609-756 18-162 (309)
40 3zux_A Transporter, ASBTNM; tr 97.6 0.065 2.2E-06 57.2 29.9 107 90-208 44-155 (332)
41 3g40_A Na-K-CL cotransporter; 96.5 0.036 1.2E-06 57.0 14.0 220 446-713 21-255 (294)
42 1efp_B ETF, protein (electron 71.2 9.8 0.00033 38.5 8.0 92 620-725 36-141 (252)
43 1efv_B Electron transfer flavo 68.4 9.8 0.00033 38.6 7.3 92 620-725 39-144 (255)
44 1o97_C Electron transferring f 67.0 7.3 0.00025 39.8 6.0 93 620-725 36-140 (264)
45 3zux_A Transporter, ASBTNM; tr 63.6 74 0.0025 33.3 13.3 96 281-384 28-125 (332)
46 2l0e_A Sodium/hydrogen exchang 52.0 2.5 8.6E-05 28.5 -0.4 27 151-177 4-30 (33)
47 2l82_A Designed protein OR32; 42.9 1.1E+02 0.0037 26.2 8.1 82 612-712 3-87 (162)
48 2l69_A Rossmann 2X3 fold prote 32.8 19 0.00064 29.9 1.9 68 612-698 52-119 (134)
49 1zun_A Sulfate adenylyltransfe 32.8 41 0.0014 35.2 5.0 56 611-673 47-102 (325)
50 1iv0_A Hypothetical protein; r 32.7 97 0.0033 26.2 6.5 54 540-595 38-93 (98)
51 2wsi_A FAD synthetase; transfe 28.7 2E+02 0.0068 29.6 9.5 91 611-714 54-169 (306)
52 2q5c_A NTRC family transcripti 25.5 3.1E+02 0.011 26.0 9.6 143 531-710 6-149 (196)
53 2k3c_A TMIX peptide; membrane 25.3 1.5 5.3E-05 29.5 -4.9 27 264-290 5-31 (33)
54 1ni5_A Putative cell cycle pro 24.7 1.1E+02 0.0038 33.2 6.9 95 611-712 14-118 (433)
55 4gl0_A LMO0810 protein; struct 24.6 85 0.0029 32.2 5.8 47 660-710 21-67 (333)
56 3a2k_A TRNA(Ile)-lysidine synt 24.2 1.2E+02 0.0043 33.1 7.3 59 611-673 19-77 (464)
57 1wy5_A TILS, hypothetical UPF0 23.7 1.1E+02 0.0039 31.5 6.5 58 611-673 25-83 (317)
58 3s40_A Diacylglycerol kinase; 23.2 86 0.0029 32.2 5.4 36 610-645 8-46 (304)
59 3gxq_A Putative regulator of t 23.1 51 0.0018 23.2 2.4 26 526-555 11-36 (54)
60 3fwk_A FMN adenylyltransferase 20.3 3.5E+02 0.012 27.8 9.2 89 612-713 60-171 (308)
61 3t37_A Probable dehydrogenase; 20.3 34 0.0012 38.0 1.7 38 700-758 15-52 (526)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.91 E-value=5.5e-25 Score=238.74 Aligned_cols=302 Identities=10% Similarity=0.082 Sum_probs=217.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcCChHHH----HHhhh--hHHHHHHHHHHHHHHHHHHHHHHhhccccccchhhHHHHHHHH
Q 044163 86 VVNTLATMGGIYFVFIVTVKMDKAMI----LRTVK--KTWNVSMTVLLVPLIISFLVAHMLRDHVPRINLKRFYFYISFL 159 (783)
Q Consensus 86 ~l~~la~iGl~~llF~~Gle~d~~~l----~~~~~--~~~~i~~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~ 159 (783)
...-+.+-.+.++||.+|+|+|.+.+ ++.+| .+...++.|+++|++++. .+... ...+.....+
T Consensus 59 l~~windglm~lFff~vGLEik~e~l~G~L~~~~~a~~p~~aAlgGmivP~~iy~----~~~~~------~~~~~~gw~i 128 (388)
T 1zcd_A 59 MLLWINDALMAVFFLLVGLEVKRELMQGSLASLRQAAFPVIAAIGGMIVPALLYL----AFNYA------DPITREGWAI 128 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHG----GGCCS------STTHHHHTSS
T ss_pred HHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHH----HHhcC------ChhhhhhhHH
Confidence 34556778888999999999999877 54444 478889999999998732 22211 1334566667
Q ss_pred HhhccHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 044163 160 ASRSSFAVVVDAISELKLL-NSELGQLTMSTAVIHEILGWLNSILSQLMRGGLQRILVVHVGAVCALSIFTIIVLRLMIE 238 (783)
Q Consensus 160 ls~TS~~Vv~~iL~el~ll-~s~~g~l~ls~aii~Di~~~ill~v~~~~~~~~~~~~~~~~~~~i~f~~~~~~v~r~~~~ 238 (783)
.+.|+.+....++..++.. ++..++.+++.|++||+.+|++++++.+ ++ .. ..+ ++..+++.++.
T Consensus 129 p~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt--~~-~~-~~~-l~~~~~~~~~~--------- 194 (388)
T 1zcd_A 129 PAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT--ND-LS-MAS-LGVAAVAIAVL--------- 194 (388)
T ss_dssp SSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC--CC-CC-HHH-HHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc--CC-cc-HHH-HHHHHHHHHHH---------
Confidence 7889999999999998764 4556699999999999999999998853 21 11 111 11111121111
Q ss_pred HHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHhcCCCC----CchhHHHHHHHHHHHHHHHHHH-
Q 044163 239 WIIRRTPERKPVKDVYIIAIMIGAITLGFIYEGLNSNYMIGAAMFGLVIPAGP----PLGSALVEKSELIITHFFLPFF- 313 (783)
Q Consensus 239 ~l~~r~~~~~~~~e~~~~~vl~~~l~~~~lae~lG~~~~lGaF~aGl~l~~~~----~~~~~l~~kl~~~~~~~f~PlF- 313 (783)
++.+|.. .+....+.++ . +.+.+.++..|+|+.+|+|++|+++|..+ +..+++++++++++..+++|+|
T Consensus 195 ~~l~r~~----v~~~~~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlFa 268 (388)
T 1zcd_A 195 AVLNLCG----ARRTGVYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFA 268 (388)
T ss_dssp HHHHHTT----CCCTHHHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHhc----chhHHHHHHH-H-HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223321 1222233333 2 34456779999999999999999999863 3467899999999989999999
Q ss_pred HHHhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc----------CCChHHHHHHHHHhhhhHHHHHHHHh
Q 044163 314 YIRLGQLTDIHSIESWRSFLALELILVSAYLGKVVGCILGLISF----------KASIRNALLFSCFLNIKGIIELMHFL 383 (783)
Q Consensus 314 Fv~~G~~~dl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~~~l~lg~~m~~rG~~~lii~~ 383 (783)
|+..|+++|...+..... .....+++..+++|++|++..++.. |++++|...+|++++.++++++++++
T Consensus 269 FanaGv~l~~~~~~~l~~-~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia~ 347 (388)
T 1zcd_A 269 FANAGVSLQGVTLDGLTS-ILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIAS 347 (388)
T ss_dssp HHHCCCCCSSSCCCTHHH-HSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHHH
T ss_pred HHhcCeeecccchhhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHHH
Confidence 999999999853311111 1123444555899999955555544 99999999999999999999999999
Q ss_pred hhcccCc--cchhhHHHHHHHHHHHHHhHHHHHHHhc
Q 044163 384 RWRSRKY--VDIQTFSELVLSNLVLTAIVTPLIAIFY 418 (783)
Q Consensus 384 i~~~~gi--i~~~~f~~lv~~~vl~t~i~~pl~~~l~ 418 (783)
++++.+. +.++.+..+++++++++++++.++++.+
T Consensus 348 laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 348 LAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp HHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred HhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998876 3567788999999998888887776544
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.69 E-value=1.3e-15 Score=161.94 Aligned_cols=253 Identities=11% Similarity=0.083 Sum_probs=172.2
Q ss_pred eeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHH-HHhhcCC
Q 044163 446 LRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVI-KYSRSSG 524 (783)
Q Consensus 446 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~-~~~~~~~ 524 (783)
-|||+|++..++....++.+..++... ...++++|+++ + .+ .++.++.+. .+..
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~~--~a~l~ll~v~~-~---------~~----------~~~~l~~~~~~~~~--- 62 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGVT--QSHLHLLVCEK-R---------RD----------HSAALNDLAQELRE--- 62 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHHH--CCEEEEEEECS-S---------SC----------CHHHHHHHHHHHHH---
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHhc--CCeEEEEEeeC-c---------HH----------HHHHHHHHHHHHhh---
Confidence 589999999999999999998887654 35799999986 2 11 122222222 2222
Q ss_pred CCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEEecCCCCcccccc
Q 044163 525 PAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIFVDRGLNSCINTA 604 (783)
Q Consensus 525 ~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIlVdRg~~~~~~~~ 604 (783)
..+.++...... .+..+.|++.|+++++|+||+|+|..+.. .+..+|++.+++++++||+|.++ .....
T Consensus 63 ~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~--~~~~~gs~~~~vl~~~~~PVlvv-~~~~~------ 131 (290)
T 3mt0_A 63 EGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPL--KKAILTPDDWKLLRFAPCPVLMT-KTARP------ 131 (290)
T ss_dssp TTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTT--STTSCCHHHHHHHHHCSSCEEEE-CCCSC------
T ss_pred CCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCch--hhcccCHHHHHHHhcCCCCEEEe-cCCCC------
Confidence 345666655433 57899999999999999999999833222 35578999999999999998774 21221
Q ss_pred ccCCcccEEEEeccCCcc-------HHHHHHHHHHHhcCCCeEEEEEEeeecCccc-------ccchhhhhHHHHHHHHH
Q 044163 605 KSAKFCYNVAVFFIGGPD-------DREAMALVSRMSGHPGVSITVFRINLEENIV-------ENESEKHIDEVVMNEFV 670 (783)
Q Consensus 605 ~~~~~~~~I~v~f~GG~d-------dreAL~~a~rma~~~~~~ltv~~~~~~~~~~-------~~~~~~~~d~~~l~~~~ 670 (783)
...++|++++-|.++ .+.|+++|.++|+..+++++++++.++.... ..+..++..++.++++.
T Consensus 132 ---~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 208 (290)
T 3mt0_A 132 ---WTGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLSSADPTFQLSETIEARYREACRTFQ 208 (290)
T ss_dssp ---STTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC---------CHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCccccccCchhHHHHHHHHHHHHHHHHHH
Confidence 124699999999888 7999999999999999999999998642210 00111222345566666
Q ss_pred hhcCCC-CCEEEEEEEecChHHHHHHHHhhc--cCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCc
Q 044163 671 ASNFGN-ASVVCRQIVANDTKQLVSAVRSLE--RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGM 747 (783)
Q Consensus 671 ~~~~~~-~~v~~~e~~v~~~~e~~~~i~~~~--~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~ 747 (783)
++.... ...... ..+ ..+.|.+.+ .++||+++|+++.+ |+.+| -+|...+.+.. .++
T Consensus 209 ~~~g~~~~~~~v~---~g~---~~~~I~~~a~~~~~dLiVmG~~g~~------~~~~~----~~Gsv~~~vl~----~~~ 268 (290)
T 3mt0_A 209 AEYGFSDEQLHIE---EGP---ADVLIPRTAQKLDAVVTVIGTVART------GLSGA----LIGNTAEVVLD----TLE 268 (290)
T ss_dssp HHHTCCTTTEEEE---ESC---HHHHHHHHHHHHTCSEEEEECCSSC------CGGGC----CSCHHHHHHHT----TCS
T ss_pred HHcCCCcceEEEe---ccC---HHHHHHHHHHhcCCCEEEECCCCCc------CCcce----ecchHHHHHHh----cCC
Confidence 665221 222211 223 233333332 46999999998643 23333 69999999999 689
Q ss_pred ccEEEEeeec
Q 044163 748 MSILVIQSVE 757 (783)
Q Consensus 748 ~sVLVvqq~~ 757 (783)
++||||+.+.
T Consensus 269 ~pVLvv~~~~ 278 (290)
T 3mt0_A 269 SDVLVLKPDD 278 (290)
T ss_dssp SEEEEECCHH
T ss_pred CCEEEECCCC
Confidence 9999998643
No 3
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.66 E-value=1.2e-15 Score=164.16 Aligned_cols=276 Identities=9% Similarity=-0.004 Sum_probs=176.2
Q ss_pred ceeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccc--cccccchhHHHHHHHHHHhhc
Q 044163 445 ELRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQK--YKLASNATDRIMRAVIKYSRS 522 (783)
Q Consensus 445 elrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~--~~~~~~~~~~i~~af~~~~~~ 522 (783)
--|||+|++..++....++.+..++... ...++++|+++......+......... ........++.++.+.....
T Consensus 7 ~k~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 83 (319)
T 3olq_A 7 YQNLLVVIDPNQDDQPALRRAVYIVQRN--GGRIKAFLPVYDLSYDMTTLLSPDERNAMRKGVINQKTAWIKQQARYYL- 83 (319)
T ss_dssp SCEEEEECCTTCSCCHHHHHHHHHHHHH--CCEEEEEEEECCGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred cceEEEEECCCcccHHHHHHHHHHHHHc--CCeEEEEEEecccchhhccccChhhHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 3589999999999999999988887653 368999999763211100000000000 00011222334443333222
Q ss_pred CCCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEEecCCCCcccc
Q 044163 523 SGPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIFVDRGLNSCIN 602 (783)
Q Consensus 523 ~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIlVdRg~~~~~~ 602 (783)
...++++...... .+..++|++.|+++++|+||+|+|..+. ..+..+|++.++|++++||+|.++-+ ...
T Consensus 84 -~~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~--~~~~~~Gs~~~~vl~~~~~PVlvv~~-~~~---- 153 (319)
T 3olq_A 84 -EAGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDK--LGSLIFTPLDWQLLRKCPAPVWMVKD-KEW---- 153 (319)
T ss_dssp -HTTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC----CCSCBCCHHHHHHHHHCSSCEEEEES-SCC----
T ss_pred -hcCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCch--hhcccccccHHHHHhcCCCCEEEecC-ccc----
Confidence 2356676666533 6899999999999999999999993222 23557899999999999999877532 221
Q ss_pred ccccCCcccEEEEeccCCcc-------HHHHHHHHHHHhcCC--CeEEEEEEeeecCccc-------cc--ch---hhhh
Q 044163 603 TAKSAKFCYNVAVFFIGGPD-------DREAMALVSRMSGHP--GVSITVFRINLEENIV-------EN--ES---EKHI 661 (783)
Q Consensus 603 ~~~~~~~~~~I~v~f~GG~d-------dreAL~~a~rma~~~--~~~ltv~~~~~~~~~~-------~~--~~---~~~~ 661 (783)
....+|++++-|.++ .+.|+++|.++|+.. +++++++++.++.... .+ +. .++.
T Consensus 154 -----~~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (319)
T 3olq_A 154 -----PEYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDPNLYNNALRGQ 228 (319)
T ss_dssp -----CTTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCHHHHHHHHHHH
T ss_pred -----ccCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccHHHHHHHHHHH
Confidence 124699999999884 489999999999887 9999999998653211 00 00 1122
Q ss_pred HHHHHHHHHhhcCCCCCEEEEEEEecChHHHHHHHHhhc--cCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhh
Q 044163 662 DEVVMNEFVASNFGNASVVCRQIVANDTKQLVSAVRSLE--RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLA 739 (783)
Q Consensus 662 d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~--~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~La 739 (783)
.++.++++..++.. ..+.+. +..| +..+.|.+.+ .+.||+++|++..+. +.+| -+|...+.+.
T Consensus 229 ~~~~l~~~~~~~~~-~~~~~~---v~~g-~~~~~I~~~a~~~~~dLiV~G~~g~~~------~~~~----~~Gsv~~~vl 293 (319)
T 3olq_A 229 HLIAMKELRQKFSI-PEEKTH---VKEG-LPEQVIPQVCEELNAGIVVLGILGRTG------LSAA----FLGNTAEQLI 293 (319)
T ss_dssp HHHHHHHHHHHTTC-CGGGEE---EEES-CHHHHHHHHHHHTTEEEEEEECCSCCS------THHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CcccEE---EecC-CcHHHHHHHHHHhCCCEEEEeccCccC------Cccc----cccHHHHHHH
Confidence 24566666665522 222221 1222 2233444433 468999999975431 2222 5899999999
Q ss_pred cCCCCCCcccEEEEeeec
Q 044163 740 SADFVGGMMSILVIQSVE 757 (783)
Q Consensus 740 s~df~~~~~sVLVvqq~~ 757 (783)
. .++++||||+.+.
T Consensus 294 ~----~~~~pVLvv~~~~ 307 (319)
T 3olq_A 294 D----HIKCDLLAIKPDG 307 (319)
T ss_dssp T----TCCSEEEEECCTT
T ss_pred h----hCCCCEEEECCCC
Confidence 9 6899999998754
No 4
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.65 E-value=3.4e-16 Score=166.69 Aligned_cols=266 Identities=11% Similarity=0.075 Sum_probs=175.9
Q ss_pred eeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccc-cccccchhHHHHHHHHHHhhcCC
Q 044163 446 LRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQK-YKLASNATDRIMRAVIKYSRSSG 524 (783)
Q Consensus 446 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~-~~~~~~~~~~i~~af~~~~~~~~ 524 (783)
-|||+|++..++....++.+..++... ...++++|+++.+...... ....... .+......++.++.+....+.
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 97 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKVG--VEEIGVLFVINLTKLSTVS-GGIDIDHYIDEMSEKAEEVLPEVAQKIEA-- 97 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHTT--CCEEEEECCEECTTC------CCCTTHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEecCccccccc-ccccHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 589999999999999999988887653 4689999998865422110 0000000 111223445556555544432
Q ss_pred CCeEEEE-EEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEEecCCCCccccc
Q 044163 525 PAVAVQP-FIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIFVDRGLNSCINT 603 (783)
Q Consensus 525 ~~v~v~~-~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIlVdRg~~~~~~~ 603 (783)
..+.++. ... ...+..++| .|+++++|+||+|.|..+.. ....+|++.++|++++||+|.|+ .+... .
T Consensus 98 ~g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~~~--~~~~~Gs~~~~vl~~~~~PVlvv-~~~~~-~--- 166 (294)
T 3loq_A 98 AGIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGASKF--KKILLGSVSEGVLHDSKVPVYIF-KHDMV-V--- 166 (294)
T ss_dssp TTCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCCHH--HHHHHCCHHHHHHHHCSSCEEEE-CCCTT-T---
T ss_pred cCCCcceeEee--ccCChhHhe--eeccCCCCEEEEcCCCCccc--cceeeccHHHHHHhcCCCCEEEe-cCccc-c---
Confidence 3566665 332 125788898 99999999999999832222 23457889999999999998774 32221 0
Q ss_pred cccCCcccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEE
Q 044163 604 AKSAKFCYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQ 683 (783)
Q Consensus 604 ~~~~~~~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e 683 (783)
....++|++++-|.++++.|+++|.++|+..+++++++++.++.. .++.+ +++.+.+... ..++++.
T Consensus 167 ---~~~~~~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~-----~~~~l-~~~~~~l~~~---~~~~~~~- 233 (294)
T 3loq_A 167 ---NSLFDRVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGD-----KTADL-RVMEEVIGAE---GIEVHVH- 233 (294)
T ss_dssp ---TCTTSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSC-----CHHHH-HHHHHHHHHT---TCCEEEE-
T ss_pred ---CccCCEEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCch-----HHHHH-HHHHHHHHHc---CCcEEEE-
Confidence 023469999999999999999999999999999999999986532 11122 2333333332 2234432
Q ss_pred EEecChHHHHHHHHhhc--cCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEEeeec
Q 044163 684 IVANDTKQLVSAVRSLE--RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVIQSVE 757 (783)
Q Consensus 684 ~~v~~~~e~~~~i~~~~--~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVvqq~~ 757 (783)
+..+ +..+.|.+.+ .+.||+++|+++.+. +.+| -+|...+.+.. .++++|||+++..
T Consensus 234 --~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~~------~~~~----~~Gs~~~~vl~----~~~~pvLvv~~~~ 292 (294)
T 3loq_A 234 --IESG-TPHKAILAKREEINATTIFMGSRGAGS------VMTM----ILGSTSESVIR----RSPVPVFVCKRGD 292 (294)
T ss_dssp --EECS-CHHHHHHHHHHHTTCSEEEEECCCCSC------HHHH----HHHCHHHHHHH----HCSSCEEEECSCT
T ss_pred --EecC-CHHHHHHHHHHhcCcCEEEEeCCCCCC------ccce----eeCcHHHHHHh----cCCCCEEEECCCC
Confidence 3334 3444454443 479999999986432 2222 58999999999 6789999998754
No 5
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.63 E-value=3.5e-15 Score=160.10 Aligned_cols=276 Identities=16% Similarity=0.152 Sum_probs=174.2
Q ss_pred ceeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCC-cccccccccccccccchhHHHHHHHHH-Hhhc
Q 044163 445 ELRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAA-PVVLPYNTQKYKLASNATDRIMRAVIK-YSRS 522 (783)
Q Consensus 445 elrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~-~~~~~~~~~~~~~~~~~~~~i~~af~~-~~~~ 522 (783)
..|||+|++..++....++.+..++... ...++++|+++ +.... +. ...............++.++.+.. +.+.
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 94 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAELR--KIPLTLVHAVS-PEVATWLE-VPLPPGVLRWQQDHGRHLIDDALKVVEQA 94 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHHH--TCCEEEEEECC-CCCCCTTC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhc--CCcEEEEEEec-Cccccccc-CCCCchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999888887643 35799999987 32111 00 000000000111223444444332 2221
Q ss_pred C--CCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEEecCCCCcc
Q 044163 523 S--GPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIFVDRGLNSC 600 (783)
Q Consensus 523 ~--~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIlVdRg~~~~ 600 (783)
. ...+.++.... ..+..++|++.|+ ++|+||||.|..+.. ....+|++.++|++++||+|.++-.+... .
T Consensus 95 ~~~~~~~~~~~~~~---~g~~~~~I~~~a~--~~DliV~G~~g~~~~--~~~~~Gs~~~~vl~~~~~PVlvv~~~~~~-~ 166 (309)
T 3cis_A 95 SLRAGPPTVHSEIV---PAAAVPTLVDMSK--DAVLMVVGCLGSGRW--PGRLLGSVSSGLLRHAHCPVVIIHDEDSV-M 166 (309)
T ss_dssp CSSSCCSCEEEEEE---SSCHHHHHHHHGG--GEEEEEEESSCTTCC--TTCCSCHHHHHHHHHCSSCEEEECTTCCC-S
T ss_pred cccCCCceEEEEEe---cCCHHHHHHHHhc--CCCEEEECCCCCccc--cccccCcHHHHHHHhCCCCEEEEcCCccc-C
Confidence 0 02456665543 3689999999996 899999999832222 34578999999999999998775222211 0
Q ss_pred ccccccCCcccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCccc---cc--chhhhhHHHHHHHHHhhc--
Q 044163 601 INTAKSAKFCYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIV---EN--ESEKHIDEVVMNEFVASN-- 673 (783)
Q Consensus 601 ~~~~~~~~~~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~---~~--~~~~~~d~~~l~~~~~~~-- 673 (783)
.....++|++++-|.+.++.|+++|.++|+..+++++++++.++.... .. +..++..++.+++.....
T Consensus 167 -----~~~~~~~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 241 (309)
T 3cis_A 167 -----PHPQQAPVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGIDWPATQSMAEQVLAERLAGWQE 241 (309)
T ss_dssp -----CSSCCCCEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred -----CCCCCCeEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcccHHHHHHHHHHHHHHHHHHHHh
Confidence 012346899999999999999999999999999999999998643210 00 011111223344333221
Q ss_pred -CCCCCEEEEEEEecChHHHHHHHHhhccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEE
Q 044163 674 -FGNASVVCRQIVANDTKQLVSAVRSLERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILV 752 (783)
Q Consensus 674 -~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLV 752 (783)
....++++. +..| +..+.|.+.+++.||+++|+++.+ ++.+ --+|...+.+.. .++++|||
T Consensus 242 ~~~~~~~~~~---~~~g-~~~~~I~~~a~~adliV~G~~~~~------~~~~----~l~Gsv~~~vl~----~~~~pVlv 303 (309)
T 3cis_A 242 RYPNVAITRV---VVRD-QPARQLVQRSEEAQLVVVGSRGRG------GYAG----MLVGSVGETVAQ----LARTPVIV 303 (309)
T ss_dssp HCTTSCEEEE---EESS-CHHHHHHHHHTTCSEEEEESSCSS------CCTT----CSSCHHHHHHHH----HCSSCEEE
T ss_pred hCCCCcEEEE---EEcC-CHHHHHHHhhCCCCEEEECCCCCC------Cccc----cccCcHHHHHHh----cCCCCEEE
Confidence 012344432 3334 344555555558999999998643 2222 268999999999 57899999
Q ss_pred Eee
Q 044163 753 IQS 755 (783)
Q Consensus 753 vqq 755 (783)
++.
T Consensus 304 v~~ 306 (309)
T 3cis_A 304 ARE 306 (309)
T ss_dssp ECC
T ss_pred eCC
Confidence 975
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.60 E-value=9.4e-15 Score=153.20 Aligned_cols=256 Identities=13% Similarity=0.087 Sum_probs=168.4
Q ss_pred eEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccc-----cccccc-----cccccchhHHHHHHH
Q 044163 447 RILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVL-----PYNTQK-----YKLASNATDRIMRAV 516 (783)
Q Consensus 447 rILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~-----~~~~~~-----~~~~~~~~~~i~~af 516 (783)
|||+|++..++....++.+..++... ...++++|+++......+... ..+... ........++.++.+
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKL--SAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERV 79 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHH--TCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHh--CCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999988887643 357999999875421000000 000000 000112234455555
Q ss_pred HHHhhcCCCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCC-cccCCCcchhHHHHHHhccCCCceEEEecC
Q 044163 517 IKYSRSSGPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNG-EVQGPNGTLHNFNINILHYAPCTVGIFVDR 595 (783)
Q Consensus 517 ~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g-~~~~~~~~~~~~~~~Vl~~ApCsVgIlVdR 595 (783)
....+. ..++++..... .+..+.|++. +.++|+||||.|..+ .. .+..+|++.++|++++||+|.++ .+
T Consensus 80 ~~~~~~--~g~~~~~~~~~---g~~~~~I~~~--~~~~dliV~G~~g~~~~~--~~~~~Gs~~~~v~~~a~~PVlvv-~~ 149 (268)
T 3ab8_A 80 RQSALA--AGVAVEAVLEE---GVPHEAILRR--ARAADLLVLGRSGEAHGD--GFGGLGSTADRVLRASPVPVLLA-PG 149 (268)
T ss_dssp HHHHHH--TTCCEEEEEEE---ECHHHHHHHH--HTTCSEEEEESSCTTSCT--TCCSCCHHHHHHHHHCSSCEEEE-CS
T ss_pred HHHHHh--CCCCeEEEEec---CCHHHHHHhh--ccCCCEEEEeccCCCccc--cccccchhHHHHHHhCCCCEEEE-CC
Confidence 543332 24556665543 5889999998 899999999998322 22 34578999999999999998764 32
Q ss_pred CCCccccccccCCcccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCC
Q 044163 596 GLNSCINTAKSAKFCYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASNFG 675 (783)
Q Consensus 596 g~~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~ 675 (783)
... ..++|++++-|.++++.|+++|.++|+..+++++++++.++.. +.++.+ +++.+.+...
T Consensus 150 ~~~----------~~~~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~----~~~~~l-~~~~~~l~~~--- 211 (268)
T 3ab8_A 150 EPV----------ELEGALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA----RAEAWA-LEAEAYLRDH--- 211 (268)
T ss_dssp SCC----------CCCEEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH----HHHHHH-HHHHHHHHHT---
T ss_pred CCC----------CCCEEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH----HHHHHH-HHHHHHHHHc---
Confidence 211 2358999999999999999999999999999999999975421 111122 2333333321
Q ss_pred CCCEEEEEEEecChHHHHHHHHhhccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044163 676 NASVVCRQIVANDTKQLVSAVRSLERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVIQ 754 (783)
Q Consensus 676 ~~~v~~~e~~v~~~~e~~~~i~~~~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVvq 754 (783)
+.++++. +.++ +..+.|.+.++++||+++|+ ++.+ --+|...+.+.. .++++|||++
T Consensus 212 ~~~~~~~---~~~g-~~~~~i~~~a~~~dliV~G~----------~~~~----~~~Gs~~~~vl~----~~~~pvlvv~ 268 (268)
T 3ab8_A 212 GVEASAL---VLGG-DAADHLLRLQGPGDLLALGA----------PVRR----LVFGSTAERVIR----NAQGPVLTAR 268 (268)
T ss_dssp TCCEEEE---EECS-CHHHHHHHHCCTTEEEEEEC----------CCSC----CSSCCHHHHHHH----HCSSCEEEEC
T ss_pred CCceEEE---EeCC-ChHHHHHHHHHhCCEEEECC----------cccc----cEeccHHHHHHh----cCCCCEEEeC
Confidence 2344432 2334 34456666665669999999 1222 269999999999 6789999984
No 7
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.80 E-value=1.1e-08 Score=96.22 Aligned_cols=137 Identities=13% Similarity=0.126 Sum_probs=93.9
Q ss_pred eeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccc-cccccchhHHHHHHHHHHhhcCC
Q 044163 446 LRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQK-YKLASNATDRIMRAVIKYSRSSG 524 (783)
Q Consensus 446 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~-~~~~~~~~~~i~~af~~~~~~~~ 524 (783)
-|||+|++..++....++.+..++... ...++++|+++.+......... .... ........++.++.+....+.
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~-- 80 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRH--QANLTALYVVDDSAYHTPALDP-VLSELLDAEAAHAKDAMRQRQQFVAT-- 80 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEEEECCCCCCGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCcccccccccc-ccHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence 589999999999999999988887643 4679999999865432211000 0000 111223345555555544332
Q ss_pred CCe-EEEEEEEEcCCCChHHHHHH-HHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 525 PAV-AVQPFIMISPYDTMHQSICR-LLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 525 ~~v-~v~~~t~vs~~~~m~~dI~~-~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
..+ .++..... .+..+.|++ .|++.++|+||||.|..+.. .+..+|++.++|++++||+|.|+
T Consensus 81 ~g~~~~~~~~~~---g~~~~~I~~~~a~~~~~dliV~G~~~~~~~--~~~~~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 81 TSAPNLKTEISY---GIPKHTIEDYAKQHPEIDLIVLGATGTNSP--HRVAVGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp SSCCCCEEEEEE---ECHHHHHHHHHHHSTTCCEEEEESCCSSCT--TTCSSCHHHHHHHHHCSSEEEEE
T ss_pred cCCcceEEEEec---CChHHHHHHHHHhhcCCCEEEECCCCCCCc--ceEEEcchHHHHhccCCCCEEEe
Confidence 245 55655544 488999999 99999999999999832222 35578999999999999998764
No 8
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.78 E-value=2.6e-08 Score=93.19 Aligned_cols=138 Identities=12% Similarity=0.109 Sum_probs=92.2
Q ss_pred eeEEEEeecCCC--hHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHHHHhhcC
Q 044163 446 LRILCCIHHEDN--VNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSRSS 523 (783)
Q Consensus 446 lrILv~v~~~~~--~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 523 (783)
-|||+|++..++ ....++.+..++... ...++++|+++............... ........++..+.++.+.+..
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 78 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARID--DAEVHFLTVIPSLPYYASLGMAYTAE-LPGMDELREGSETQLKEIAKKF 78 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHH--TCEEEEEEEECC-----------------CHHHHHHHHHHHHHHHHTTS
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhc--CCeEEEEEEecCCcccccccccccch-hhhHHHHHHHHHHHHHHHHHHc
Confidence 489999999998 888888888777542 36799999988653221110000000 0111233455666677666543
Q ss_pred C-CCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 524 G-PAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 524 ~-~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
. ..+.++..... .+..+.|++.|+++++|+||||.|. +.. .+..+|++.++|++++||+|.|+
T Consensus 79 ~~~~~~v~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~-~~~--~~~~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 79 SIPEDRMHFHVAE---GSPKDKILALAKSLPADLVIIASHR-PDI--TTYLLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp CCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEEESSC-TTC--CSCSSCHHHHHHHHHCSSEEEEE
T ss_pred CCCCCceEEEEEe---cChHHHHHHHHHHhCCCEEEEeCCC-CCC--eeeeeccHHHHHHHhCCCCEEEe
Confidence 2 23455655544 5899999999999999999999983 322 35678999999999999998764
No 9
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.75 E-value=5.6e-08 Score=93.13 Aligned_cols=138 Identities=13% Similarity=0.135 Sum_probs=91.2
Q ss_pred eeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccC-----CCCCcc--c--c-ccc---ccc-cccccchhHH
Q 044163 446 LRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLA-----GRAAPV--V--L-PYN---TQK-YKLASNATDR 511 (783)
Q Consensus 446 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~-----~r~~~~--~--~-~~~---~~~-~~~~~~~~~~ 511 (783)
-|||+|++..++....++.+..++... ...++++|+++.. ...... . . +.. ..+ ........++
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTLK--AEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKN 83 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCSS--CCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhc--CCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHH
Confidence 589999999999999999999998753 4689999998753 100000 0 0 110 000 0011122344
Q ss_pred HHHHHHHHhhcCCCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEE
Q 044163 512 IMRAVIKYSRSSGPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGI 591 (783)
Q Consensus 512 i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgI 591 (783)
.++.+....+. ..+.++..+.. .+..+.|++.|++.++|+||||.|..+.+ .+..+|++.++|++++||+|.|
T Consensus 84 ~l~~~~~~~~~--~g~~~~~~v~~---G~~~~~I~~~a~~~~~dlIV~G~~g~~~~--~~~~~GSv~~~vl~~~~~pVlv 156 (162)
T 1mjh_A 84 KMENIKKELED--VGFKVKDIIVV---GIPHEEIVKIAEDEGVDIIIMGSHGKTNL--KEILLGSVTENVIKKSNKPVLV 156 (162)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCSSCC--TTCSSCHHHHHHHHHCCSCEEE
T ss_pred HHHHHHHHHHH--cCCceEEEEcC---CCHHHHHHHHHHHcCCCEEEEcCCCCCCc--cceEecchHHHHHHhCCCCEEE
Confidence 44444433222 34666655543 58999999999999999999999832222 3567999999999999999887
Q ss_pred E
Q 044163 592 F 592 (783)
Q Consensus 592 l 592 (783)
+
T Consensus 157 v 157 (162)
T 1mjh_A 157 V 157 (162)
T ss_dssp E
T ss_pred E
Confidence 5
No 10
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.74 E-value=1.2e-08 Score=95.80 Aligned_cols=137 Identities=9% Similarity=0.027 Sum_probs=91.4
Q ss_pred eeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcc--cccccc-cc-cccccchhHHHHHHHHHHhh
Q 044163 446 LRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPV--VLPYNT-QK-YKLASNATDRIMRAVIKYSR 521 (783)
Q Consensus 446 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~--~~~~~~-~~-~~~~~~~~~~i~~af~~~~~ 521 (783)
-|||+|++..++....++.+..++... ...++++|+++.+...... ...... .. ........++.++.+....+
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 80 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLT--GAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRAT 80 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHH--CCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999988887643 3679999998854200000 000000 00 11112344555666554443
Q ss_pred cCCCCeEE---EEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEE
Q 044163 522 SSGPAVAV---QPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGI 591 (783)
Q Consensus 522 ~~~~~v~v---~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgI 591 (783)
.. .+++ +..... .+..+.|++.|++.++|+||||.|..+.. .+..+|++.++|++++||+|.|
T Consensus 81 ~~--g~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~--~~~~~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 81 EL--GVPADKVRAFVKG---GRPSRTIVRFARKRECDLVVIGAQGTNGD--KSLLLGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp HT--TCCGGGEEEEEEE---SCHHHHHHHHHHHTTCSEEEECSSCTTCC--SCCCCCHHHHHHHHHCSSCEEE
T ss_pred hc--CCCccceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCccc--cceeeccHHHHHHhhCCCCEEE
Confidence 22 3333 544433 58999999999999999999999832222 3557899999999999999876
No 11
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.72 E-value=3.8e-08 Score=94.06 Aligned_cols=130 Identities=9% Similarity=0.091 Sum_probs=91.7
Q ss_pred ceeEEEEeec-CCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHHHHhhcC
Q 044163 445 ELRILCCIHH-EDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSRSS 523 (783)
Q Consensus 445 elrILv~v~~-~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 523 (783)
--|||+|++. .+.....++.+..++... ...++++|+++.++... + ......++.++.+....+..
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~--~a~l~llhV~~~~~~~~------~-----~~~~~~~~~l~~~~~~~~~~ 90 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLR--GVPVYVVHSLPGGGRTK------D-----EDIIEAKETLSWAVSIIRKE 90 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHH--TCCEEEEEEECCSTTSC------H-----HHHHHHHHHHHHHHHHHHHT
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEEcCCCccc------H-----HHHHHHHHHHHHHHHHHHhc
Confidence 4589999999 999999999988887653 35699999988543211 1 01233455555555443322
Q ss_pred CCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 524 GPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 524 ~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
.+.++..+.+. ..+..+.|++.|++.++|+||||.|..+.. .+..+|++.++|++++||+|.|+
T Consensus 91 --g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~--~~~~lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 91 --GAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPT--GKLIFGSVARDVILKANKPVICI 154 (155)
T ss_dssp --TCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTT--SCEECCHHHHHHHHHCSSCEEEE
T ss_pred --CCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCC--CCEEeccHHHHHHHhCCCCEEEe
Confidence 34455444442 368999999999999999999999822222 34578999999999999998764
No 12
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.69 E-value=7.7e-08 Score=92.99 Aligned_cols=138 Identities=12% Similarity=0.100 Sum_probs=89.3
Q ss_pred eeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcc-ccc-------ccccc-cccccchhHHHHHHH
Q 044163 446 LRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPV-VLP-------YNTQK-YKLASNATDRIMRAV 516 (783)
Q Consensus 446 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~-~~~-------~~~~~-~~~~~~~~~~i~~af 516 (783)
-|||+|++..++....++.+..++... ...++++|+++........ -.. ..... ........++.++.+
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNKME--VGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK 83 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCCSC--CSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHhc--CCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999998753 4689999998743211000 000 00000 001112334444444
Q ss_pred HHHhhcCCCCeEEEE--EEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 517 IKYSRSSGPAVAVQP--FIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 517 ~~~~~~~~~~v~v~~--~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
....+.. .+.++. .+.. .+..+.|++.|+++++|+||||.|..+.+ .+..+|++.++|++++||+|.|+
T Consensus 84 ~~~~~~~--g~~~~~~~~~~~---g~~~~~I~~~a~~~~~DlIV~G~~g~~~~--~~~~~Gsv~~~vl~~~~~PVlvv 154 (170)
T 2dum_A 84 AEEVKRA--FRAKNVRTIIRF---GIPWDEIVKVAEEENVSLIILPSRGKLSL--SHEFLGSTVMRVLRKTKKPVLII 154 (170)
T ss_dssp HHHHHHH--TTCSEEEEEEEE---ECHHHHHHHHHHHTTCSEEEEESCCCCC----TTCCCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHc--CCceeeeeEEec---CChHHHHHHHHHHcCCCEEEECCCCCCcc--ccceechHHHHHHHhCCCCEEEE
Confidence 4332211 334444 3332 58999999999999999999999832222 35678999999999999998875
No 13
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.66 E-value=7.2e-08 Score=90.98 Aligned_cols=139 Identities=14% Similarity=0.102 Sum_probs=83.3
Q ss_pred ceeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccc-cccccchhHHHHHHHHHHhhcC
Q 044163 445 ELRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQK-YKLASNATDRIMRAVIKYSRSS 523 (783)
Q Consensus 445 elrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~-~~~~~~~~~~i~~af~~~~~~~ 523 (783)
--|||+|++..++....++.+..++... ...++++|+++......+.+....... ........++..+.++.+.+..
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 83 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQI--GARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTL 83 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHH--TCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3589999999999999999988887653 467999999875422100000000000 0001112233334444443322
Q ss_pred CCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 524 GPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 524 ~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
.... ++..... .+..+.|++.|+++++|+||||.|..+.. . ..+|++.++|++++||+|.|+
T Consensus 84 ~~~~-~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~--~-~~~Gs~~~~vl~~~~~pVlvv 145 (150)
T 3tnj_A 84 GIDP-AHRWLVW---GEPREEIIRIAEQENVDLIVVGSHGRHGL--A-LLLGSTANSVLHYAKCDVLAV 145 (150)
T ss_dssp TCCG-GGEEEEE---SCHHHHHHHHHHHTTCSEEEEEEC-----------CCCHHHHHHHHCSSEEEEE
T ss_pred CCCc-ceEEEec---CCHHHHHHHHHHHcCCCEEEEecCCCCCc--C-eEecchHHHHHHhCCCCEEEE
Confidence 1110 2222322 58899999999999999999999832222 3 578999999999999998775
No 14
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.65 E-value=8.1e-08 Score=92.55 Aligned_cols=138 Identities=10% Similarity=0.036 Sum_probs=89.7
Q ss_pred CceeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEE--EeeccCCCCCcccccccccccccccchhHHHHHHHHHHhh
Q 044163 444 SELRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPV--HLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSR 521 (783)
Q Consensus 444 ~elrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~l--hlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 521 (783)
.--|||+|++..+.....++.+..++. . ...++++ |+++.+......-...+.. ........++.++.+....+
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA~-~--~a~l~ll~a~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~ 91 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIAG-A--DAKLIIASAYLPQHEDARAADILKDESY-KVTGTAPIYEILHDAKERAH 91 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHT-T--TSEEEEEEECCC---------------------CCTHHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHhC-C--CCEEEEEEeeeccCcccccccccccHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 346899999999999999999988876 4 3578999 8877542101100000000 11123345566666554433
Q ss_pred cCCCCeE-EEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 522 SSGPAVA-VQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 522 ~~~~~v~-v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
. ..+. ++..+.. .+..+.|++.|++.++|+||||.|..+.+ .+..+|++.++|++++||+|.|+
T Consensus 92 ~--~gv~~v~~~v~~---G~~~~~I~~~a~~~~~DLIV~G~~g~~~~--~~~~lGSva~~vl~~a~~PVlvV 156 (163)
T 1tq8_A 92 N--AGAKNVEERPIV---GAPVDALVNLADEEKADLLVVGNVGLSTI--AGRLLGSVPANVSRRAKVDVLIV 156 (163)
T ss_dssp T--TTCCEEEEEEEC---SSHHHHHHHHHHHTTCSEEEEECCCCCSH--HHHHTBBHHHHHHHHTTCEEEEE
T ss_pred H--cCCCeEEEEEec---CCHHHHHHHHHHhcCCCEEEECCCCCCcc--cceeeccHHHHHHHhCCCCEEEE
Confidence 2 2455 6655543 58899999999999999999999832222 24578999999999999998775
No 15
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.64 E-value=6.3e-08 Score=90.03 Aligned_cols=133 Identities=12% Similarity=0.071 Sum_probs=84.2
Q ss_pred eeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHHHHhhcCCC
Q 044163 446 LRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSRSSGP 525 (783)
Q Consensus 446 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 525 (783)
-|||+|++..+.....++.+..++... ...++++|+++..........+.+. .....++..+.++.+.+..
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~-- 73 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAH--GARLIVVHAYEPVPDYLGEPFFEEA-----LRRRLERAEGVLEEARALT-- 73 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEEECC-------------------CHHHHHHHHHHHHHHHHH--
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhc--CCEEEEEEEecCCCccccccchHHH-----HHHHHHHHHHHHHHHHHHc--
Confidence 379999999999999999888887543 3579999998732110000000000 0111122223333333221
Q ss_pred Ce-EEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 526 AV-AVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 526 ~v-~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
.+ .++..... .+..+.|++.|++.++|+||||.|..+.. .+..+|++.++|++++||+|.|+
T Consensus 74 g~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~--~~~~~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 74 GVPKEDALLLE---GVPAEAILQAARAEKADLIVMGTRGLGAL--GSLFLGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp CCCGGGEEEEE---SSHHHHHHHHHHHTTCSEEEEESSCTTCC--SCSSSCHHHHHHHHHCSSCEEEE
T ss_pred CCCccEEEEEe---cCHHHHHHHHHHHcCCCEEEECCCCCchh--hhhhhccHHHHHHhcCCCCEEEe
Confidence 23 33333332 58999999999999999999999832222 34578999999999999998764
No 16
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.64 E-value=3.2e-08 Score=94.30 Aligned_cols=138 Identities=9% Similarity=0.047 Sum_probs=91.7
Q ss_pred CceeEEEEee--cCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHHHHhh
Q 044163 444 SELRILCCIH--HEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSR 521 (783)
Q Consensus 444 ~elrILv~v~--~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~ 521 (783)
.--|||+|++ ..++....++.+..++... ...++++|+++........ ..............++.++.+....+
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~ 89 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLAHDY--DVPLGICSVLESEDINIFD--SLTPSKIQAKRKHVEDVVAEYVQLAE 89 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHHHHH--TCCEEEEEEECCCCTTCCC--SSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHhc--CCEEEEEEEEeCCCccccc--cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458999999 9999999999888887653 3579999998865321110 00000011122334555555543333
Q ss_pred cCCCCe-EEEEEEEEcCCCChHHHHHHH-HHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 522 SSGPAV-AVQPFIMISPYDTMHQSICRL-LKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 522 ~~~~~v-~v~~~t~vs~~~~m~~dI~~~-A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
. ..+ .++.....+ .+..+.|++. |++.++|+||+|.|..+.. . ..+|++.++|++++||+|.|+
T Consensus 90 ~--~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~--~-~~~Gs~~~~vl~~a~~PVlvV 155 (156)
T 3fg9_A 90 Q--RGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPH--S-KIAGAIGPRLARKAPISVIVV 155 (156)
T ss_dssp H--HTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTT--S-SSCSCHHHHHHHHCSSEEEEE
T ss_pred H--cCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCcc--c-eeecchHHHHHHhCCCCEEEe
Confidence 2 134 355555542 5899999999 9999999999999833333 2 479999999999999998764
No 17
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.63 E-value=1.4e-07 Score=91.57 Aligned_cols=142 Identities=8% Similarity=0.095 Sum_probs=84.6
Q ss_pred ceeEEEEeecCC---------ChHHHHHHHHhhCCCC-CCCceEEEEEeeccCCCCC----cccc-cccccc-cccccch
Q 044163 445 ELRILCCIHHED---------NVNGIITLLRATNPTE-MNPICAYPVHLKDLAGRAA----PVVL-PYNTQK-YKLASNA 508 (783)
Q Consensus 445 elrILv~v~~~~---------~~~~ll~l~~~~~~~~-~~p~~v~~lhlvel~~r~~----~~~~-~~~~~~-~~~~~~~ 508 (783)
--|||+|++..+ .....++.+..+...+ .....++++|+++...... .... ...... .......
T Consensus 5 ~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (175)
T 2gm3_A 5 PTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKAK 84 (175)
T ss_dssp CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHHH
T ss_pred ccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHHH
Confidence 358999999988 8888999988865332 1357899999986432110 0000 000000 0001122
Q ss_pred hHHHHHHHHHHhhcCCCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCc
Q 044163 509 TDRIMRAVIKYSRSSGPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCT 588 (783)
Q Consensus 509 ~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCs 588 (783)
.++.++.+....+. ..+.++..+.. .+..+.|++.|++.++|+||||.|..+.+ .+..+|++.++|++++||+
T Consensus 85 ~~~~l~~~~~~~~~--~g~~~~~~v~~---G~~~~~I~~~a~~~~~DLIVmG~~g~~~~--~~~~~Gsva~~vl~~a~~p 157 (175)
T 2gm3_A 85 GLHLLEFFVNKCHE--IGVGCEAWIKT---GDPKDVICQEVKRVRPDFLVVGSRGLGRF--QKVFVGTVSAFCVKHAECP 157 (175)
T ss_dssp HHHHHHHHHHHHHH--HTCEEEEEEEE---SCHHHHHHHHHHHHCCSEEEEEECCCC----------CHHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHH--CCCceEEEEec---CCHHHHHHHHHHHhCCCEEEEeCCCCChh--hhhhcCchHHHHHhCCCCC
Confidence 34455544433221 24556655443 58899999999999999999999832222 3457899999999999999
Q ss_pred eEEEe
Q 044163 589 VGIFV 593 (783)
Q Consensus 589 VgIlV 593 (783)
|.|+-
T Consensus 158 Vlvv~ 162 (175)
T 2gm3_A 158 VMTIK 162 (175)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 88853
No 18
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.59 E-value=8.5e-08 Score=89.14 Aligned_cols=132 Identities=9% Similarity=0.026 Sum_probs=89.9
Q ss_pred eEEEEeecCCChHHHHHHHHhhC-CCCCCCceEEEEEeeccCCCCCcccccccccc-ccccc-chhHHHHHHHHHHhhcC
Q 044163 447 RILCCIHHEDNVNGIITLLRATN-PTEMNPICAYPVHLKDLAGRAAPVVLPYNTQK-YKLAS-NATDRIMRAVIKYSRSS 523 (783)
Q Consensus 447 rILv~v~~~~~~~~ll~l~~~~~-~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~-~~~~~-~~~~~i~~af~~~~~~~ 523 (783)
|||+|++..++....++.+..++ .. ....++++|+++........ ...... ..... ...++.++.+....+.
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~--~~a~l~ll~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 77 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKD--ADCTLTLIHVKPEFMLYGEA--VLAAYDEIEMKEEEKAKLLTQKFSTFFTE- 77 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTC--TTEEEEEEEEECCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccC--CCCEEEEEEEecCCCccccc--ccCcHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 79999999999999999999998 54 35789999998865322110 000000 01112 3345555555544432
Q ss_pred CCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 524 GPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 524 ~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
..+.++..... .+..+.|++.|+ ++|+||||.|..+.. .+.. |++.++|++++||+|.|+
T Consensus 78 -~g~~~~~~v~~---g~~~~~I~~~a~--~~dliV~G~~~~~~~--~~~~-Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 78 -KGINPFVVIKE---GEPVEMVLEEAK--DYNLLIIGSSENSFL--NKIF-ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp -TTCCCEEEEEE---SCHHHHHHHHHT--TCSEEEEECCTTSTT--SSCC-CCTTCHHHHHCSSCEEEE
T ss_pred -CCCCeEEEEec---CChHHHHHHHHh--cCCEEEEeCCCcchH--HHHh-CcHHHHHHhcCCCCEEEe
Confidence 34566655544 489999999998 999999999833322 2344 889999999999998764
No 19
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.56 E-value=2.7e-07 Score=86.48 Aligned_cols=128 Identities=10% Similarity=0.065 Sum_probs=86.0
Q ss_pred cccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccc----------cchhhhhHHHHHHHHHhhcCC-CC
Q 044163 609 FCYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVE----------NESEKHIDEVVMNEFVASNFG-NA 677 (783)
Q Consensus 609 ~~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~----------~~~~~~~d~~~l~~~~~~~~~-~~ 677 (783)
..++|++++-|.++.+.|+++|.++|+..+++++++++.++..... .+..++..++.++++...... ..
T Consensus 4 ~~~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 83 (146)
T 3s3t_A 4 RYTNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHTPALDPVLSELLDAEAAHAKDAMRQRQQFVATTSA 83 (146)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred ccceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4679999999999999999999999999999999999987532110 011123334566666665321 12
Q ss_pred -CEEEEEEEecChHHHHHHHHh-hc--cCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEE
Q 044163 678 -SVVCRQIVANDTKQLVSAVRS-LE--RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVI 753 (783)
Q Consensus 678 -~v~~~e~~v~~~~e~~~~i~~-~~--~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVv 753 (783)
++++. +..|+ ..+.|.+ .+ .++||+|+|+++.. ++.+ --+|...+.+.. .++++||||
T Consensus 84 ~~~~~~---~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~~------~~~~----~~~Gs~~~~vl~----~~~~pVlvV 145 (146)
T 3s3t_A 84 PNLKTE---ISYGI-PKHTIEDYAKQHPEIDLIVLGATGTN------SPHR----VAVGSTTSYVVD----HAPCNVIVI 145 (146)
T ss_dssp CCCEEE---EEEEC-HHHHHHHHHHHSTTCCEEEEESCCSS------CTTT----CSSCHHHHHHHH----HCSSEEEEE
T ss_pred cceEEE---EecCC-hHHHHHHHHHhhcCCCEEEECCCCCC------Ccce----EEEcchHHHHhc----cCCCCEEEe
Confidence 33432 22232 2333333 33 67999999988543 1222 269999999999 678999998
Q ss_pred e
Q 044163 754 Q 754 (783)
Q Consensus 754 q 754 (783)
+
T Consensus 146 ~ 146 (146)
T 3s3t_A 146 R 146 (146)
T ss_dssp C
T ss_pred C
Confidence 5
No 20
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.52 E-value=3e-07 Score=85.74 Aligned_cols=131 Identities=8% Similarity=0.051 Sum_probs=84.3
Q ss_pred eeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeecc-CCCCCcccccccccc-cccccchhHHHHHHHHHHhhcC
Q 044163 446 LRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDL-AGRAAPVVLPYNTQK-YKLASNATDRIMRAVIKYSRSS 523 (783)
Q Consensus 446 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel-~~r~~~~~~~~~~~~-~~~~~~~~~~i~~af~~~~~~~ 523 (783)
-|||+|++..++....++.+..++... ...++++|+++. +..... +......+ .+......++. ++.+.+..
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---l~~~~~~~ 76 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRH--DAKLSIIHVDVNFSDLYTG-LIDVNMSSMQDRISTETQKA---LLDLAESV 76 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHH--TCEEEEEEEEECCGGGCCC-CEEHHHHHHTTCCCCHHHHH---HHHHHHHS
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhc--CCEEEEEEEecCchhhhcc-ccccchHHHHHHHHHHHHHH---HHHHHHHc
Confidence 379999999999999999888887642 357999999843 211111 00000000 01111223333 33333322
Q ss_pred CCCeEE-EEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 524 GPAVAV-QPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 524 ~~~v~v-~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
.+.+ +..... .+..+.|++.|++.++|+||||.| .+... + +|++.++|++++||+|.|+
T Consensus 77 --~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~-~~~~~---~-lgs~~~~vl~~~~~pVlvv 136 (141)
T 1jmv_A 77 --DYPISEKLSGS---GDLGQVLSDAIEQYDVDLLVTGHH-QDFWS---K-LMSSTRQVMNTIKIDMLVV 136 (141)
T ss_dssp --SSCCCCEEEEE---ECHHHHHHHHHHHTTCCEEEEEEC-CCCHH---H-HHHHHHHHHTTCCSEEEEE
T ss_pred --CCCceEEEEec---CCHHHHHHHHHHhcCCCEEEEeCC-Cchhh---h-hcchHHHHHhcCCCCEEEe
Confidence 2222 222322 588999999999999999999998 65543 2 6899999999999998875
No 21
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.50 E-value=5.3e-07 Score=83.65 Aligned_cols=125 Identities=10% Similarity=0.119 Sum_probs=83.3
Q ss_pred cEEEEeccCCccHHHHHHHHHHHh-cCCCeEEEEEEeeecCcccc-------c--chhh-hhHHHHHHHHHhhcC-CCCC
Q 044163 611 YNVAVFFIGGPDDREAMALVSRMS-GHPGVSITVFRINLEENIVE-------N--ESEK-HIDEVVMNEFVASNF-GNAS 678 (783)
Q Consensus 611 ~~I~v~f~GG~ddreAL~~a~rma-~~~~~~ltv~~~~~~~~~~~-------~--~~~~-~~d~~~l~~~~~~~~-~~~~ 678 (783)
++|++++-|.++.+.|+++|.++| +..+++++++++.++..... + +..+ +..++.++++..... .+.+
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~ 81 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLYGEAVLAAYDEIEMKEEEKAKLLTQKFSTFFTEKGIN 81 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence 589999999999999999999999 99999999999987532110 0 0011 223455666655431 1223
Q ss_pred EEEEEEEecChHHHHHHHHhhccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044163 679 VVCRQIVANDTKQLVSAVRSLERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVIQ 754 (783)
Q Consensus 679 v~~~e~~v~~~~e~~~~i~~~~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVvq 754 (783)
++. . +..| +..+.|.+.+.++||+|+|+++.. ++.+| - |...+.+.. .++++||||+
T Consensus 82 ~~~--~-v~~g-~~~~~I~~~a~~~dliV~G~~~~~------~~~~~----~-Gs~~~~vl~----~~~~pVlvv~ 138 (138)
T 3idf_A 82 PFV--V-IKEG-EPVEMVLEEAKDYNLLIIGSSENS------FLNKI----F-ASHQDDFIQ----KAPIPVLIVK 138 (138)
T ss_dssp CEE--E-EEES-CHHHHHHHHHTTCSEEEEECCTTS------TTSSC----C-CCTTCHHHH----HCSSCEEEEC
T ss_pred eEE--E-EecC-ChHHHHHHHHhcCCEEEEeCCCcc------hHHHH----h-CcHHHHHHh----cCCCCEEEeC
Confidence 332 2 2233 233444444449999999998543 12222 3 999999999 6789999985
No 22
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.43 E-value=2.6e-07 Score=88.13 Aligned_cols=128 Identities=7% Similarity=0.021 Sum_probs=85.7
Q ss_pred ccEEEEeccC-CccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhcC-CCCCEEEEEEEec
Q 044163 610 CYNVAVFFIG-GPDDREAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASNF-GNASVVCRQIVAN 687 (783)
Q Consensus 610 ~~~I~v~f~G-G~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~-~~~~v~~~e~~v~ 687 (783)
.++|++++-| .++.+.|+++|.++|+..+++++++++.++..... +..++..++.++++..... ...+++.. ..+.
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~g~~~~~~-~~v~ 101 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRTK-DEDIIEAKETLSWAVSIIRKEGAEGEEH-LLVR 101 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTSC-HHHHHHHHHHHHHHHHHHHHTTCCEEEE-EEES
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCccc-HHHHHHHHHHHHHHHHHHHhcCCCceEE-EEec
Confidence 5789999999 99999999999999999999999999987532211 1122233455555554321 12344432 2243
Q ss_pred ChHHHHHHHHhhc--cCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044163 688 DTKQLVSAVRSLE--RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVIQ 754 (783)
Q Consensus 688 ~~~e~~~~i~~~~--~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVvq 754 (783)
.| +..+.|.+.+ .+.||+|+|+++.. ++. .--+|...+.+.. .++++||||+
T Consensus 102 ~G-~~~~~I~~~a~~~~~DLIV~G~~g~~------~~~----~~~lGSv~~~vl~----~a~~PVLvVr 155 (155)
T 3dlo_A 102 GK-EPPDDIVDFADEVDAIAIVIGIRKRS------PTG----KLIFGSVARDVIL----KANKPVICIK 155 (155)
T ss_dssp SS-CHHHHHHHHHHHTTCSEEEEECCEEC------TTS----CEECCHHHHHHHH----HCSSCEEEEC
T ss_pred CC-CHHHHHHHHHHHcCCCEEEECCCCCC------CCC----CEEeccHHHHHHH----hCCCCEEEeC
Confidence 33 2333444433 37999999988542 122 2269999999999 6889999985
No 23
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.42 E-value=3.5e-07 Score=85.74 Aligned_cols=126 Identities=13% Similarity=0.120 Sum_probs=82.8
Q ss_pred ccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCc-----------cc---ccchhhhhHHHHHHHHHhhcC-
Q 044163 610 CYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEEN-----------IV---ENESEKHIDEVVMNEFVASNF- 674 (783)
Q Consensus 610 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~-----------~~---~~~~~~~~d~~~l~~~~~~~~- 674 (783)
.++|++++-|.++.+.|+++|.++|++.+++++++++.++.. .. ..+..++..++.++++.....
T Consensus 2 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 81 (147)
T 3hgm_A 2 FNRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATE 81 (147)
T ss_dssp CSEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999999999999999999986421 00 011112333455666554321
Q ss_pred CCCCE---EEEEEEecChHHHHHHHHhhc--cCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCccc
Q 044163 675 GNASV---VCRQIVANDTKQLVSAVRSLE--RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMS 749 (783)
Q Consensus 675 ~~~~v---~~~e~~v~~~~e~~~~i~~~~--~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~s 749 (783)
.+.++ ++. +..| +..+.|.+.+ .++||+|+|+++.. ++. .--+|...+.+.. .++++
T Consensus 82 ~g~~~~~~~~~---~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~------~~~----~~~~Gs~~~~vl~----~~~~p 143 (147)
T 3hgm_A 82 LGVPADKVRAF---VKGG-RPSRTIVRFARKRECDLVVIGAQGTN------GDK----SLLLGSVAQRVAG----SAHCP 143 (147)
T ss_dssp TTCCGGGEEEE---EEES-CHHHHHHHHHHHTTCSEEEECSSCTT------CCS----CCCCCHHHHHHHH----HCSSC
T ss_pred cCCCccceEEE---EecC-CHHHHHHHHHHHhCCCEEEEeCCCCc------ccc----ceeeccHHHHHHh----hCCCC
Confidence 12222 422 2223 2333444433 48999999998643 122 2368999999999 67899
Q ss_pred EEEE
Q 044163 750 ILVI 753 (783)
Q Consensus 750 VLVv 753 (783)
||||
T Consensus 144 VlvV 147 (147)
T 3hgm_A 144 VLVV 147 (147)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9986
No 24
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.41 E-value=9.5e-07 Score=81.93 Aligned_cols=125 Identities=13% Similarity=0.081 Sum_probs=82.8
Q ss_pred ccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcc--c---cc---chhhhhHHHHHHHHHhhcCCCC-CEE
Q 044163 610 CYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENI--V---EN---ESEKHIDEVVMNEFVASNFGNA-SVV 680 (783)
Q Consensus 610 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~--~---~~---~~~~~~d~~~l~~~~~~~~~~~-~v~ 680 (783)
.++|++++-|.++++.|+++|.++|+..+++++++++.++... . .+ +..++..++.++++..+. .. +++
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~~ 79 (137)
T 2z08_A 2 FKTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDYLGEPFFEEALRRRLERAEGVLEEARALT--GVPKED 79 (137)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC--------------CHHHHHHHHHHHHHHHHH--CCCGGG
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCccccccchHHHHHHHHHHHHHHHHHHHHHc--CCCccE
Confidence 3689999999999999999999999999999999999864210 0 00 111223345666666542 22 333
Q ss_pred EEEEEecChHHHHHHHHhhc--cCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEEe
Q 044163 681 CRQIVANDTKQLVSAVRSLE--RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVIQ 754 (783)
Q Consensus 681 ~~e~~v~~~~e~~~~i~~~~--~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVvq 754 (783)
+. +..| +..+.|.+.+ .++||+|+|+++.. ++. ..-+|...+.+.. .++++||||+
T Consensus 80 ~~---~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~------~~~----~~~~Gs~~~~vl~----~~~~pVlvv~ 137 (137)
T 2z08_A 80 AL---LLEG-VPAEAILQAARAEKADLIVMGTRGLG------ALG----SLFLGSQSQRVVA----EAPCPVLLVR 137 (137)
T ss_dssp EE---EEES-SHHHHHHHHHHHTTCSEEEEESSCTT------CCS----CSSSCHHHHHHHH----HCSSCEEEEC
T ss_pred EE---EEec-CHHHHHHHHHHHcCCCEEEECCCCCc------hhh----hhhhccHHHHHHh----cCCCCEEEeC
Confidence 32 2223 2333444433 47999999998643 122 2369999999999 6789999985
No 25
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.39 E-value=1e-06 Score=83.02 Aligned_cols=127 Identities=9% Similarity=0.086 Sum_probs=81.6
Q ss_pred ccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCccc------------c--cchhhhhHHHHHHHHHhhcCC
Q 044163 610 CYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIV------------E--NESEKHIDEVVMNEFVASNFG 675 (783)
Q Consensus 610 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~------------~--~~~~~~~d~~~l~~~~~~~~~ 675 (783)
.++|++++-|.++.+.|+++|.++|+..+++++++++.++.... + .+..++..++.++++..+...
T Consensus 6 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 85 (150)
T 3tnj_A 6 YHHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMPDTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLGI 85 (150)
T ss_dssp CSEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC--------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCccccccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 57999999999999999999999999999999999998642110 0 011123334566666665422
Q ss_pred CCCEEEEEEEecChHHHHHHHHhhc--cCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEE
Q 044163 676 NASVVCRQIVANDTKQLVSAVRSLE--RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVI 753 (783)
Q Consensus 676 ~~~v~~~e~~v~~~~e~~~~i~~~~--~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVv 753 (783)
. .+.. + +..| +..+.|.+.+ .++||+|+|++.... + + -.+|...+.+.. .++++||||
T Consensus 86 ~-~~~~-~--~~~g-~~~~~I~~~a~~~~~dliV~G~~~~~~------~----~-~~~Gs~~~~vl~----~~~~pVlvv 145 (150)
T 3tnj_A 86 D-PAHR-W--LVWG-EPREEIIRIAEQENVDLIVVGSHGRHG------L----A-LLLGSTANSVLH----YAKCDVLAV 145 (150)
T ss_dssp C-GGGE-E--EEES-CHHHHHHHHHHHTTCSEEEEEEC-------------------CCCHHHHHHH----HCSSEEEEE
T ss_pred C-cceE-E--EecC-CHHHHHHHHHHHcCCCEEEEecCCCCC------c----C-eEecchHHHHHH----hCCCCEEEE
Confidence 2 1222 1 2222 2223344333 489999999886431 1 1 369999999999 678999999
Q ss_pred eee
Q 044163 754 QSV 756 (783)
Q Consensus 754 qq~ 756 (783)
+..
T Consensus 146 ~~~ 148 (150)
T 3tnj_A 146 RLR 148 (150)
T ss_dssp ECC
T ss_pred eCC
Confidence 864
No 26
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.38 E-value=1.2e-06 Score=83.64 Aligned_cols=129 Identities=11% Similarity=0.054 Sum_probs=84.8
Q ss_pred ccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecC-----c--cc--------cc------chh---hhhHHHH
Q 044163 610 CYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEE-----N--IV--------EN------ESE---KHIDEVV 665 (783)
Q Consensus 610 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~-----~--~~--------~~------~~~---~~~d~~~ 665 (783)
.++|++++=|.++.+.|+++|.++|+..+++++++++.++. . .. .. +.+ ++..++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (162)
T 1mjh_A 5 YKKILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNK 84 (162)
T ss_dssp CCEEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999999998753 1 00 00 000 1222345
Q ss_pred HHHHHhhcC-CCCCEEEEEEEecChHHHHHHHHhhc--cCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCC
Q 044163 666 MNEFVASNF-GNASVVCRQIVANDTKQLVSAVRSLE--RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASAD 742 (783)
Q Consensus 666 l~~~~~~~~-~~~~v~~~e~~v~~~~e~~~~i~~~~--~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~d 742 (783)
++++..... .+.++++ + +..| +..+.|.+.+ .++||+|+|+++.+ ++.+ --+|.+.+.+..
T Consensus 85 l~~~~~~~~~~g~~~~~--~-v~~G-~~~~~I~~~a~~~~~dlIV~G~~g~~------~~~~----~~~GSv~~~vl~-- 148 (162)
T 1mjh_A 85 MENIKKELEDVGFKVKD--I-IVVG-IPHEEIVKIAEDEGVDIIIMGSHGKT------NLKE----ILLGSVTENVIK-- 148 (162)
T ss_dssp HHHHHHHHHHTTCEEEE--E-EEEE-CHHHHHHHHHHHTTCSEEEEESCCSS------CCTT----CSSCHHHHHHHH--
T ss_pred HHHHHHHHHHcCCceEE--E-EcCC-CHHHHHHHHHHHcCCCEEEEcCCCCC------Cccc----eEecchHHHHHH--
Confidence 666654421 1223333 2 2233 2333444433 47999999998543 2222 269999999999
Q ss_pred CCCCcccEEEEeee
Q 044163 743 FVGGMMSILVIQSV 756 (783)
Q Consensus 743 f~~~~~sVLVvqq~ 756 (783)
.++++||||+..
T Consensus 149 --~~~~pVlvv~~~ 160 (162)
T 1mjh_A 149 --KSNKPVLVVKRK 160 (162)
T ss_dssp --HCCSCEEEECCC
T ss_pred --hCCCCEEEEeCC
Confidence 678999999763
No 27
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.38 E-value=2.4e-06 Score=82.40 Aligned_cols=131 Identities=11% Similarity=0.022 Sum_probs=85.4
Q ss_pred ccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCccc---------------c-cch---hhhhHHHHHHHHH
Q 044163 610 CYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIV---------------E-NES---EKHIDEVVMNEFV 670 (783)
Q Consensus 610 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~---------------~-~~~---~~~~d~~~l~~~~ 670 (783)
.++|++++-|.++.+.|+++|.++|+..+++++++++.++.... + ++. .++..++.++++.
T Consensus 5 ~~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 84 (170)
T 2dum_A 5 FRKVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLEELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEKA 84 (170)
T ss_dssp CSEEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGGCCC------------CCTTSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccccccccccccccccccHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999999999999999998653210 0 011 1122345566655
Q ss_pred hhcC-CCCCEEEEEEEecChHHHHHHHHhhc--cCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCc
Q 044163 671 ASNF-GNASVVCRQIVANDTKQLVSAVRSLE--RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGM 747 (783)
Q Consensus 671 ~~~~-~~~~v~~~e~~v~~~~e~~~~i~~~~--~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~ 747 (783)
.... ...+++.. ..+..| +..+.|.+.+ .++||+|+|+++.. ++. .--+|.+.+.+.. .++
T Consensus 85 ~~~~~~g~~~~~~-~~~~~g-~~~~~I~~~a~~~~~DlIV~G~~g~~------~~~----~~~~Gsv~~~vl~----~~~ 148 (170)
T 2dum_A 85 EEVKRAFRAKNVR-TIIRFG-IPWDEIVKVAEEENVSLIILPSRGKL------SLS----HEFLGSTVMRVLR----KTK 148 (170)
T ss_dssp HHHHHHTTCSEEE-EEEEEE-CHHHHHHHHHHHTTCSEEEEESCCCC------C------TTCCCHHHHHHHH----HCS
T ss_pred HHHHHcCCceeee-eEEecC-ChHHHHHHHHHHcCCCEEEECCCCCC------ccc----cceechHHHHHHH----hCC
Confidence 5321 12334431 112233 2333444433 47999999998543 122 2369999999999 678
Q ss_pred ccEEEEeee
Q 044163 748 MSILVIQSV 756 (783)
Q Consensus 748 ~sVLVvqq~ 756 (783)
++||||+..
T Consensus 149 ~PVlvv~~~ 157 (170)
T 2dum_A 149 KPVLIIKEV 157 (170)
T ss_dssp SCEEEECCC
T ss_pred CCEEEEccC
Confidence 999999864
No 28
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.32 E-value=1.6e-06 Score=80.83 Aligned_cols=125 Identities=12% Similarity=0.082 Sum_probs=80.1
Q ss_pred cEEEEeccCCcc--HHHHHHHHHHHhcCCCeEEEEEEeeecCccc---------ccchhhhhHH---HHHHHHHhhcCC-
Q 044163 611 YNVAVFFIGGPD--DREAMALVSRMSGHPGVSITVFRINLEENIV---------ENESEKHIDE---VVMNEFVASNFG- 675 (783)
Q Consensus 611 ~~I~v~f~GG~d--dreAL~~a~rma~~~~~~ltv~~~~~~~~~~---------~~~~~~~~d~---~~l~~~~~~~~~- 675 (783)
++|++++=|.++ .+.|+++|.++|+..+++++++++.++.... +.+..++..+ +.++++..+...
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 81 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYYASLGMAYTAELPGMDELREGSETQLKEIAKKFSIP 81 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC----------------CHHHHHHHHHHHHHHHHTTSCCC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCcccccccccccchhhhHHHHHHHHHHHHHHHHHHcCCC
Confidence 589999999999 9999999999999999999999998652210 0000111122 233444333311
Q ss_pred CCCEEEEEEEecChHHHHHHHHhhc--cCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEE
Q 044163 676 NASVVCRQIVANDTKQLVSAVRSLE--RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVI 753 (783)
Q Consensus 676 ~~~v~~~e~~v~~~~e~~~~i~~~~--~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVv 753 (783)
..++++. +..| +..+.|.+.+ .++||+|+|+++ . |+. ..-+|...+.+.. .++++||||
T Consensus 82 ~~~v~~~---~~~g-~~~~~I~~~a~~~~~dliV~G~~~-~------~~~----~~~~Gs~~~~v~~----~~~~pVlvv 142 (143)
T 3fdx_A 82 EDRMHFH---VAEG-SPKDKILALAKSLPADLVIIASHR-P------DIT----TYLLGSNAAAVVR----HAECSVLVV 142 (143)
T ss_dssp GGGEEEE---EEES-CHHHHHHHHHHHTTCSEEEEESSC-T------TCC----SCSSCHHHHHHHH----HCSSEEEEE
T ss_pred CCceEEE---EEec-ChHHHHHHHHHHhCCCEEEEeCCC-C------CCe----eeeeccHHHHHHH----hCCCCEEEe
Confidence 1234432 2223 3334444443 479999999984 2 122 2369999999999 678999998
Q ss_pred e
Q 044163 754 Q 754 (783)
Q Consensus 754 q 754 (783)
+
T Consensus 143 ~ 143 (143)
T 3fdx_A 143 R 143 (143)
T ss_dssp C
T ss_pred C
Confidence 5
No 29
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.29 E-value=1.1e-06 Score=83.41 Aligned_cols=128 Identities=17% Similarity=0.207 Sum_probs=83.8
Q ss_pred cccEEEEecc--CCccHHHHHHHHHHHhcCCCeEEEEEEeeecCccc-----c---cchhhhhHHHHHHHHHhhcC-CCC
Q 044163 609 FCYNVAVFFI--GGPDDREAMALVSRMSGHPGVSITVFRINLEENIV-----E---NESEKHIDEVVMNEFVASNF-GNA 677 (783)
Q Consensus 609 ~~~~I~v~f~--GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~-----~---~~~~~~~d~~~l~~~~~~~~-~~~ 677 (783)
..++|++++- |.++.+.|+++|.++|+..+++++++++.++.... . .+..++..++.++++..... .+.
T Consensus 14 ~~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~ 93 (156)
T 3fg9_A 14 VYRRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDINIFDSLTPSKIQAKRKHVEDVVAEYVQLAEQRGV 93 (156)
T ss_dssp CCC-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCccccccCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4579999999 99999999999999999999999999998753210 0 01112233455666654321 111
Q ss_pred -CEEEEEEEecChHHHHHHHHhh---ccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEE
Q 044163 678 -SVVCRQIVANDTKQLVSAVRSL---ERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVI 753 (783)
Q Consensus 678 -~v~~~e~~v~~~~e~~~~i~~~---~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVv 753 (783)
++++. +..+|. ..+.|.+. +.++||+|+|+++... + +. -+|...+.+.. .++++||||
T Consensus 94 ~~~~~~--v~~~g~-~~~~I~~~~a~~~~~DlIV~G~~g~~~---------~-~~-~~Gs~~~~vl~----~a~~PVlvV 155 (156)
T 3fg9_A 94 NQVEPL--VYEGGD-VDDVILEQVIPEFKPDLLVTGADTEFP---------H-SK-IAGAIGPRLAR----KAPISVIVV 155 (156)
T ss_dssp SSEEEE--EEECSC-HHHHHHHTHHHHHCCSEEEEETTCCCT---------T-SS-SCSCHHHHHHH----HCSSEEEEE
T ss_pred CceEEE--EEeCCC-HHHHHHHHHHHhcCCCEEEECCCCCCc---------c-ce-eecchHHHHHH----hCCCCEEEe
Confidence 34432 232232 22333332 3679999999986431 2 23 69999999999 688999998
Q ss_pred e
Q 044163 754 Q 754 (783)
Q Consensus 754 q 754 (783)
+
T Consensus 156 ~ 156 (156)
T 3fg9_A 156 R 156 (156)
T ss_dssp C
T ss_pred C
Confidence 5
No 30
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.28 E-value=1.7e-06 Score=83.23 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=83.1
Q ss_pred cccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEE--EeeecCcc--c----c---cchhhhhHHHHHHHHHhhcC-CC
Q 044163 609 FCYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVF--RINLEENI--V----E---NESEKHIDEVVMNEFVASNF-GN 676 (783)
Q Consensus 609 ~~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~--~~~~~~~~--~----~---~~~~~~~d~~~l~~~~~~~~-~~ 676 (783)
..++|++++-|.+..+.|+++|.++|+ .+++++++ ++.++... . . .+..++..++.++++..... ..
T Consensus 16 ~~~~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g 94 (163)
T 1tq8_A 16 AYKTVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARAADILKDESYKVTGTAPIYEILHDAKERAHNAG 94 (163)
T ss_dssp CCCEEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC--------------------CCTHHHHHHHHHHHHHTTT
T ss_pred cCCEEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 457999999999999999999999999 99999999 88753211 0 0 01112233456666655431 12
Q ss_pred CC-EEEEEEEecChHHHHHHHHhh--ccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEE
Q 044163 677 AS-VVCRQIVANDTKQLVSAVRSL--ERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVI 753 (783)
Q Consensus 677 ~~-v~~~e~~v~~~~e~~~~i~~~--~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVv 753 (783)
.+ +++ . +..|+ ..+.|.+. +.++||+|+|++.... +. ..-+|.+.+.+.. .++++||||
T Consensus 95 v~~v~~--~-v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~~------~~----~~~lGSva~~vl~----~a~~PVlvV 156 (163)
T 1tq8_A 95 AKNVEE--R-PIVGA-PVDALVNLADEEKADLLVVGNVGLST------IA----GRLLGSVPANVSR----RAKVDVLIV 156 (163)
T ss_dssp CCEEEE--E-EECSS-HHHHHHHHHHHTTCSEEEEECCCCCS------HH----HHHTBBHHHHHHH----HTTCEEEEE
T ss_pred CCeEEE--E-EecCC-HHHHHHHHHHhcCCCEEEECCCCCCc------cc----ceeeccHHHHHHH----hCCCCEEEE
Confidence 23 443 2 23342 33344433 2679999999985431 11 1258999999999 578999999
Q ss_pred eeec
Q 044163 754 QSVE 757 (783)
Q Consensus 754 qq~~ 757 (783)
+...
T Consensus 157 ~~~~ 160 (163)
T 1tq8_A 157 HTTE 160 (163)
T ss_dssp CCC-
T ss_pred eCCC
Confidence 8643
No 31
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.24 E-value=3.8e-06 Score=77.81 Aligned_cols=127 Identities=10% Similarity=0.048 Sum_probs=81.0
Q ss_pred eeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEee-cc-CCCCC-cc-cccccccccccccchhHHHHHHHHHH-h
Q 044163 446 LRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLK-DL-AGRAA-PV-VLPYNTQKYKLASNATDRIMRAVIKY-S 520 (783)
Q Consensus 446 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlv-el-~~r~~-~~-~~~~~~~~~~~~~~~~~~i~~af~~~-~ 520 (783)
-|||+|++..+.....++.+..++... ...++++|++ +. +.... .. -.+.............++.++.++.+ .
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 82 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEKL--GAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREVWEKLT 82 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTTT--CCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHHc--CCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHHHHHhh
Confidence 589999999999999999998887653 4689999998 63 10000 00 00000000001112233444444222 1
Q ss_pred hcCCCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEE
Q 044163 521 RSSGPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGI 591 (783)
Q Consensus 521 ~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgI 591 (783)
. ... .++..+. ..+..+.|++.|++.++|+||||.| |+ ++.++|++++||+|.|
T Consensus 83 ~--~~~-~~~~~~~---~g~~~~~I~~~a~~~~~dliV~G~~--g~---------sv~~~vl~~a~~PVlv 136 (138)
T 1q77_A 83 G--STE-IPGVEYR---IGPLSEEVKKFVEGKGYELVVWACY--PS---------AYLCKVIDGLNLASLI 136 (138)
T ss_dssp S--CCC-CCCEEEE---CSCHHHHHHHHHTTSCCSEEEECSC--CG---------GGTHHHHHHSSSEEEE
T ss_pred c--cCC-cceEEEE---cCCHHHHHHHHHHhcCCCEEEEeCC--CC---------chHHHHHHhCCCceEe
Confidence 2 122 4444433 3689999999999999999999987 43 5678999999999876
No 32
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.21 E-value=7.1e-06 Score=76.19 Aligned_cols=125 Identities=8% Similarity=0.114 Sum_probs=81.1
Q ss_pred ccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeec-Cc-ccc---------cchhhhhHHHHHHHHHhhcCCCCC
Q 044163 610 CYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLE-EN-IVE---------NESEKHIDEVVMNEFVASNFGNAS 678 (783)
Q Consensus 610 ~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~-~~-~~~---------~~~~~~~d~~~l~~~~~~~~~~~~ 678 (783)
.++|++++-|.++++.|+++|.++|+..+++++++++.++ .. ... .+..++..++.++++..+.. .+
T Consensus 2 ~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~ 79 (141)
T 1jmv_A 2 YKHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYTGLIDVNMSSMQDRISTETQKALLDLAESVD--YP 79 (141)
T ss_dssp CSEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCCCCEEHHHHHHTTCCCCHHHHHHHHHHHHSS--SC
T ss_pred CceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhccccccchHHHHHHHHHHHHHHHHHHHHHcC--CC
Confidence 3689999999999999999999999999999999999843 11 000 00011223456666666542 12
Q ss_pred EEEEEEEecChHHHHHHHHhh--ccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEEeee
Q 044163 679 VVCRQIVANDTKQLVSAVRSL--ERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVIQSV 756 (783)
Q Consensus 679 v~~~e~~v~~~~e~~~~i~~~--~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVvqq~ 756 (783)
+. +..+..|. ..+.|.+. +.++||+|+|++ .+. | ..+|...+.+.. .++++||||+..
T Consensus 80 ~~--~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~-~~~---------~---~~lgs~~~~vl~----~~~~pVlvv~~~ 139 (141)
T 1jmv_A 80 IS--EKLSGSGD-LGQVLSDAIEQYDVDLLVTGHH-QDF---------W---SKLMSSTRQVMN----TIKIDMLVVPLR 139 (141)
T ss_dssp CC--CEEEEEEC-HHHHHHHHHHHTTCCEEEEEEC-CCC---------H---HHHHHHHHHHHT----TCCSEEEEEECC
T ss_pred ce--EEEEecCC-HHHHHHHHHHhcCCCEEEEeCC-Cch---------h---hhhcchHHHHHh----cCCCCEEEeeCC
Confidence 21 11122221 22233332 256999999998 431 1 126999999999 678999999864
No 33
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=98.04 E-value=8.5e-06 Score=86.83 Aligned_cols=148 Identities=9% Similarity=0.031 Sum_probs=88.5
Q ss_pred CceeEEEEeecCCC-------hHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHH
Q 044163 444 SELRILCCIHHEDN-------VNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAV 516 (783)
Q Consensus 444 ~elrILv~v~~~~~-------~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af 516 (783)
..-|||+|++..+. ....++.+..++........++++|+.+........-.+.... ........++..+.+
T Consensus 155 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l 233 (319)
T 3olq_A 155 EYGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAIELPDFDP-NLYNNALRGQHLIAM 233 (319)
T ss_dssp TTCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCTTCTTCCH-HHHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhccCCcccH-HHHHHHHHHHHHHHH
Confidence 34689999998774 4666666666554320024699999988654321100000000 000111122334444
Q ss_pred HHHhhcCCCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEEecCC
Q 044163 517 IKYSRSSGPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIFVDRG 596 (783)
Q Consensus 517 ~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIlVdRg 596 (783)
+.+.+.. +...++....- .+..+.|++.|+++++|+|+||.|..+.+ .+..+|++.++|++++||+|.++-.++
T Consensus 234 ~~~~~~~-~~~~~~~~v~~---g~~~~~I~~~a~~~~~dLiV~G~~g~~~~--~~~~~Gsv~~~vl~~~~~pVLvv~~~~ 307 (319)
T 3olq_A 234 KELRQKF-SIPEEKTHVKE---GLPEQVIPQVCEELNAGIVVLGILGRTGL--SAAFLGNTAEQLIDHIKCDLLAIKPDG 307 (319)
T ss_dssp HHHHHHT-TCCGGGEEEEE---SCHHHHHHHHHHHTTEEEEEEECCSCCST--HHHHHHHHHHHHHTTCCSEEEEECCTT
T ss_pred HHHHHHh-CCCcccEEEec---CCcHHHHHHHHHHhCCCEEEEeccCccCC--ccccccHHHHHHHhhCCCCEEEECCCC
Confidence 4444433 11122222322 57899999999999999999999832222 345789999999999999988875545
Q ss_pred CC
Q 044163 597 LN 598 (783)
Q Consensus 597 ~~ 598 (783)
..
T Consensus 308 ~~ 309 (319)
T 3olq_A 308 FT 309 (319)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 34
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.02 E-value=8.4e-06 Score=85.86 Aligned_cols=134 Identities=13% Similarity=0.054 Sum_probs=83.6
Q ss_pred CceeEEEEeecCCC-------hHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHH
Q 044163 444 SELRILCCIHHEDN-------VNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAV 516 (783)
Q Consensus 444 ~elrILv~v~~~~~-------~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af 516 (783)
..-|||+|++..++ ....++.+..++... ...++++|+++.+..... .+.. . ......++..+.+
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~--~a~l~ll~v~~~~~~~~~--~~~~--~--~~~~~~~~~~~~l 204 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLA--KATLHVISAHPSPMLSSA--DPTF--Q--LSETIEARYREAC 204 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHT--TCEEEEEEEEC-----------CH--H--HHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHc--CCeEEEEEEecCcccccc--Cchh--H--HHHHHHHHHHHHH
Confidence 34689999999887 677888887776543 367999999886532211 0000 0 0001112223333
Q ss_pred HHHhhcCCCCeE-EEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 517 IKYSRSSGPAVA-VQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 517 ~~~~~~~~~~v~-v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
+.+.+.. .+. ++....- .+..+.|++.|++.++|+|+||.|..+.+ .+..+|++.++|++++||+|.++
T Consensus 205 ~~~~~~~--g~~~~~~~v~~---g~~~~~I~~~a~~~~~dLiVmG~~g~~~~--~~~~~Gsv~~~vl~~~~~pVLvv 274 (290)
T 3mt0_A 205 RTFQAEY--GFSDEQLHIEE---GPADVLIPRTAQKLDAVVTVIGTVARTGL--SGALIGNTAEVVLDTLESDVLVL 274 (290)
T ss_dssp HHHHHHH--TCCTTTEEEEE---SCHHHHHHHHHHHHTCSEEEEECCSSCCG--GGCCSCHHHHHHHTTCSSEEEEE
T ss_pred HHHHHHc--CCCcceEEEec---cCHHHHHHHHHHhcCCCEEEECCCCCcCC--cceecchHHHHHHhcCCCCEEEE
Confidence 3333322 121 2222222 58999999999999999999999832223 35678999999999999998876
No 35
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.00 E-value=2.7e-05 Score=75.34 Aligned_cols=131 Identities=11% Similarity=0.114 Sum_probs=77.4
Q ss_pred cccEEEEeccCCc---------cHHHHHHHHHHHh-cC--CCeEEEEEEeeecCccc----------ccc------hhhh
Q 044163 609 FCYNVAVFFIGGP---------DDREAMALVSRMS-GH--PGVSITVFRINLEENIV----------ENE------SEKH 660 (783)
Q Consensus 609 ~~~~I~v~f~GG~---------ddreAL~~a~rma-~~--~~~~ltv~~~~~~~~~~----------~~~------~~~~ 660 (783)
..++|+|++-|.+ ..+.|+++|.+++ +. .+++++++++.++.... ..+ ..++
T Consensus 4 ~~~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (175)
T 2gm3_A 4 EPTKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASPEDFRDMRQSNKA 83 (175)
T ss_dssp -CEEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSHHHHHHHTTSHHH
T ss_pred CccEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCHHHHHHHHHHHHH
Confidence 3579999999998 8899999999986 44 69999999997532110 000 0011
Q ss_pred hHHHHHHHHHhhcCCCCCEEEEEEEecChHHHHHHHHhhc--cCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhh
Q 044163 661 IDEVVMNEFVASNFGNASVVCRQIVANDTKQLVSAVRSLE--RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLL 738 (783)
Q Consensus 661 ~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~--~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~L 738 (783)
..++.++++..... ...+.+...+. .| +..+.|.+.+ .++||+|+|+++.. ++.+ --+|...+.+
T Consensus 84 ~~~~~l~~~~~~~~-~~g~~~~~~v~-~G-~~~~~I~~~a~~~~~DLIVmG~~g~~------~~~~----~~~Gsva~~v 150 (175)
T 2gm3_A 84 KGLHLLEFFVNKCH-EIGVGCEAWIK-TG-DPKDVICQEVKRVRPDFLVVGSRGLG------RFQK----VFVGTVSAFC 150 (175)
T ss_dssp HHHHHHHHHHHHHH-HHTCEEEEEEE-ES-CHHHHHHHHHHHHCCSEEEEEECCCC------------------CHHHHH
T ss_pred HHHHHHHHHHHHHH-HCCCceEEEEe-cC-CHHHHHHHHHHHhCCCEEEEeCCCCC------hhhh----hhcCchHHHH
Confidence 23356666654321 11233322222 23 2333444333 47999999988543 1222 2689999999
Q ss_pred hcCCCCCCcccEEEEeee
Q 044163 739 ASADFVGGMMSILVIQSV 756 (783)
Q Consensus 739 as~df~~~~~sVLVvqq~ 756 (783)
.. .++++||||+..
T Consensus 151 l~----~a~~pVlvv~~~ 164 (175)
T 2gm3_A 151 VK----HAECPVMTIKRN 164 (175)
T ss_dssp HH----HCSSCEEEEECC
T ss_pred Hh----CCCCCEEEEcCC
Confidence 99 678999999864
No 36
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.96 E-value=2.9e-05 Score=71.78 Aligned_cols=117 Identities=13% Similarity=0.044 Sum_probs=76.6
Q ss_pred cccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEee-ec--Cc-------cc-ccch---hhhhHHHHHHHHHhh--
Q 044163 609 FCYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRIN-LE--EN-------IV-ENES---EKHIDEVVMNEFVAS-- 672 (783)
Q Consensus 609 ~~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~-~~--~~-------~~-~~~~---~~~~d~~~l~~~~~~-- 672 (783)
..++|++++-|.++.+.|+++|.++|+..+++++++++. +. .. .. +++. .++..++.++++ ..
T Consensus 3 ~~~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~ 81 (138)
T 1q77_A 3 AMKVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVLEDVYNLERANVTFGLPFPPEIKEESKKRIERRLREV-WEKL 81 (138)
T ss_dssp CCEEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEECHHHHHHHHHHHHHCCCCCTHHHHHHHHHHHHHHHHH-HHHH
T ss_pred cccEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEecccccccccccccCCCCChHHHHHHHHHHHHHHHHH-HHHh
Confidence 357999999999999999999999999999999999998 52 00 00 0111 112234556666 43
Q ss_pred -cCCCCCEEEEEEEecChHHHHHHHHhhc--cCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCccc
Q 044163 673 -NFGNASVVCRQIVANDTKQLVSAVRSLE--RSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMS 749 (783)
Q Consensus 673 -~~~~~~v~~~e~~v~~~~e~~~~i~~~~--~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~s 749 (783)
...+ ++++. +..| +..+.|.+.+ .++||+|+|+++. .+.+.+.. .++++
T Consensus 82 ~~~~~-~~~~~---~~~g-~~~~~I~~~a~~~~~dliV~G~~g~-------------------sv~~~vl~----~a~~P 133 (138)
T 1q77_A 82 TGSTE-IPGVE---YRIG-PLSEEVKKFVEGKGYELVVWACYPS-------------------AYLCKVID----GLNLA 133 (138)
T ss_dssp HSCCC-CCCEE---EECS-CHHHHHHHHHTTSCCSEEEECSCCG-------------------GGTHHHHH----HSSSE
T ss_pred hccCC-cceEE---EEcC-CHHHHHHHHHHhcCCCEEEEeCCCC-------------------chHHHHHH----hCCCc
Confidence 1122 44432 2333 2334444443 3799999998742 56777777 57889
Q ss_pred EEEEe
Q 044163 750 ILVIQ 754 (783)
Q Consensus 750 VLVvq 754 (783)
||||+
T Consensus 134 Vlvv~ 138 (138)
T 1q77_A 134 SLIVK 138 (138)
T ss_dssp EEECC
T ss_pred eEeeC
Confidence 99874
No 37
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=97.92 E-value=1.1e-05 Score=83.84 Aligned_cols=129 Identities=17% Similarity=0.175 Sum_probs=84.7
Q ss_pred cEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCccc----------ccc----------hhhhhHHHHHHHHH
Q 044163 611 YNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIV----------ENE----------SEKHIDEVVMNEFV 670 (783)
Q Consensus 611 ~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~----------~~~----------~~~~~d~~~l~~~~ 670 (783)
++|++++-|.++++.|+++|.++|++.+++++++++.++.... .++ ..++..++.++++.
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 80 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLARIPELLDFGALTVPVPVLRTELERALALRGEAVLERVR 80 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHTHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcccccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999999999999998642100 000 01122335566655
Q ss_pred hhcC-CCCCEEEEEEEecChHHHHHHHHhhccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCccc
Q 044163 671 ASNF-GNASVVCRQIVANDTKQLVSAVRSLERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMS 749 (783)
Q Consensus 671 ~~~~-~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~s 749 (783)
.... ...++++. +..|. ..+.|.+.+.++||+|+|+++... ++ +..-+|...+.+.. .++++
T Consensus 81 ~~~~~~g~~~~~~---~~~g~-~~~~I~~~~~~~dliV~G~~g~~~-----~~----~~~~~Gs~~~~v~~----~a~~P 143 (268)
T 3ab8_A 81 QSALAAGVAVEAV---LEEGV-PHEAILRRARAADLLVLGRSGEAH-----GD----GFGGLGSTADRVLR----ASPVP 143 (268)
T ss_dssp HHHHHTTCCEEEE---EEEEC-HHHHHHHHHTTCSEEEEESSCTTS-----CT----TCCSCCHHHHHHHH----HCSSC
T ss_pred HHHHhCCCCeEEE---EecCC-HHHHHHhhccCCCEEEEeccCCCc-----cc----cccccchhHHHHHH----hCCCC
Confidence 4321 12334432 22332 333444447889999999875320 12 22369999999999 67899
Q ss_pred EEEEeee
Q 044163 750 ILVIQSV 756 (783)
Q Consensus 750 VLVvqq~ 756 (783)
||||+..
T Consensus 144 Vlvv~~~ 150 (268)
T 3ab8_A 144 VLLAPGE 150 (268)
T ss_dssp EEEECSS
T ss_pred EEEECCC
Confidence 9999864
No 38
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=97.89 E-value=1.9e-05 Score=83.15 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=85.8
Q ss_pred CceeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHHHHhhcC
Q 044163 444 SELRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSRSS 523 (783)
Q Consensus 444 ~elrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~ 523 (783)
..-|||+|++..+.....++.+..++... ...++++|+.+... .++.++.+..+.+..
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~~--~~~l~ll~v~~~~~--------------------~~~~l~~~~~~l~~~ 226 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKKT--GGELHIIHVSEDGD--------------------KTADLRVMEEVIGAE 226 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHHH--TCEEEEEEECSSSC--------------------CHHHHHHHHHHHHHT
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhhc--CCEEEEEEEccCch--------------------HHHHHHHHHHHHHHc
Confidence 34689999999888888888888876542 35799999976432 122333333333222
Q ss_pred CCCeEEEEEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEE
Q 044163 524 GPAVAVQPFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIF 592 (783)
Q Consensus 524 ~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIl 592 (783)
.+.++.... ..+..+.|++.|++.++|+|+||.+..+.+ .+..+|++.++|++++||+|.++
T Consensus 227 --~~~~~~~~~---~g~~~~~I~~~a~~~~~dLlV~G~~~~~~~--~~~~~Gs~~~~vl~~~~~pvLvv 288 (294)
T 3loq_A 227 --GIEVHVHIE---SGTPHKAILAKREEINATTIFMGSRGAGSV--MTMILGSTSESVIRRSPVPVFVC 288 (294)
T ss_dssp --TCCEEEEEE---CSCHHHHHHHHHHHTTCSEEEEECCCCSCH--HHHHHHCHHHHHHHHCSSCEEEE
T ss_pred --CCcEEEEEe---cCCHHHHHHHHHHhcCcCEEEEeCCCCCCc--cceeeCcHHHHHHhcCCCCEEEE
Confidence 344554432 359999999999999999999999833333 24578999999999999998775
No 39
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=97.85 E-value=1.7e-05 Score=84.35 Aligned_cols=130 Identities=12% Similarity=0.115 Sum_probs=86.9
Q ss_pred cccEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCccc------ccc---hhhhhHHHHHHHHHhhcC-----
Q 044163 609 FCYNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIV------ENE---SEKHIDEVVMNEFVASNF----- 674 (783)
Q Consensus 609 ~~~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~------~~~---~~~~~d~~~l~~~~~~~~----- 674 (783)
..++|+|++-|.++++.|+++|.++|++.+++++++++.++.... ..+ ..++..++.++++.....
T Consensus 18 ~~~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 97 (309)
T 3cis_A 18 SSLGIIVGIDDSPAAQVAVRWAARDAELRKIPLTLVHAVSPEVATWLEVPLPPGVLRWQQDHGRHLIDDALKVVEQASLR 97 (309)
T ss_dssp CTTEEEEECCSSHHHHHHHHHHHHHHHHHTCCEEEEEECCCCCCCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred CCCeEEEEECCCHHHHHHHHHHHHHHHhcCCcEEEEEEecCcccccccCCCCchhhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 467999999999999999999999999999999999998642110 001 111222344555443221
Q ss_pred -CCCCEEEEEEEecChHHHHHHHHhhccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEE
Q 044163 675 -GNASVVCRQIVANDTKQLVSAVRSLERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVI 753 (783)
Q Consensus 675 -~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVv 753 (783)
...++++ ++. .| +..+.|.+.++++||+|+|++... ++. ..-+|...+.+.. .+++.|||+
T Consensus 98 ~~~~~~~~--~~~-~g-~~~~~I~~~a~~~DliV~G~~g~~------~~~----~~~~Gs~~~~vl~----~~~~PVlvv 159 (309)
T 3cis_A 98 AGPPTVHS--EIV-PA-AAVPTLVDMSKDAVLMVVGCLGSG------RWP----GRLLGSVSSGLLR----HAHCPVVII 159 (309)
T ss_dssp SCCSCEEE--EEE-SS-CHHHHHHHHGGGEEEEEEESSCTT------CCT----TCCSCHHHHHHHH----HCSSCEEEE
T ss_pred CCCceEEE--EEe-cC-CHHHHHHHHhcCCCEEEECCCCCc------ccc----ccccCcHHHHHHH----hCCCCEEEE
Confidence 1234443 223 34 344455555668999999998542 122 2369999999999 679999999
Q ss_pred eee
Q 044163 754 QSV 756 (783)
Q Consensus 754 qq~ 756 (783)
+..
T Consensus 160 ~~~ 162 (309)
T 3cis_A 160 HDE 162 (309)
T ss_dssp CTT
T ss_pred cCC
Confidence 864
No 40
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.58 E-value=0.065 Score=57.25 Aligned_cols=107 Identities=9% Similarity=0.003 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhhhcCChHHHHHhhhh---HHHHHHHHHH-HHHHHHHHHHHHhhccccccchhhHHHHHHHHH-hhcc
Q 044163 90 LATMGGIYFVFIVTVKMDKAMILRTVKK---TWNVSMTVLL-VPLIISFLVAHMLRDHVPRINLKRFYFYISFLA-SRSS 164 (783)
Q Consensus 90 la~iGl~~llF~~Gle~d~~~l~~~~~~---~~~i~~~~~l-ip~~~g~~~~~~l~~~~~~~~~~~~~l~lg~~l-s~TS 164 (783)
....++.+.||..|++++.+++++..++ ........++ .|+ ++++++..+... +. ....+++-.+. +.++
T Consensus 44 ~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pl-l~~~l~~~~~l~---~~-~~~Glil~~~~P~~~~ 118 (332)
T 3zux_A 44 YIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPA-TAWCLSKLLNLP---AE-IAVGVILVGCCPGGTA 118 (332)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHH-HHHHHHHHTTCC---HH-HHHHHHHHHHSCCCTH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHH-HHHHHHHHhCCC---hH-HHHHHHHHhcCCchhH
Confidence 3456888999999999999999865443 3332333443 454 455555554221 11 12222222222 2222
Q ss_pred HHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044163 165 FAVVVDAISELKLLNSELGQLTMSTAVIHEILGWLNSILSQLMR 208 (783)
Q Consensus 165 ~~Vv~~iL~el~ll~s~~g~l~ls~aii~Di~~~ill~v~~~~~ 208 (783)
..+ +..+ .+.+ ..++++...++.+++.+.+-+...+.
T Consensus 119 s~v----~t~~--a~Gd-~~la~~~~~~stll~~~~~Pl~~~l~ 155 (332)
T 3zux_A 119 SNV----MTYL--ARGN-VALSVAVTSVSTLTSPLLTPAIFLML 155 (332)
T ss_dssp HHH----HHHH--TTCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH----HHHH--hCCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2332 2223 25677788888888887776655544
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=96.46 E-value=0.036 Score=57.01 Aligned_cols=220 Identities=9% Similarity=0.048 Sum_probs=134.8
Q ss_pred eeEEEEeecCCChHHHHHHHHhhCCCCCCCceEEEEEeeccCCCCCcccccccccccccccchhHHHHHHHHHHhhcCCC
Q 044163 446 LRILCCIHHEDNVNGIITLLRATNPTEMNPICAYPVHLKDLAGRAAPVVLPYNTQKYKLASNATDRIMRAVIKYSRSSGP 525 (783)
Q Consensus 446 lrILv~v~~~~~~~~ll~l~~~~~~~~~~p~~v~~lhlvel~~r~~~~~~~~~~~~~~~~~~~~~~i~~af~~~~~~~~~ 525 (783)
-+|||++.+|..-.+++.++..+...+ ..+.+.++..-..+ . ...++ +.+++.|-+..
T Consensus 21 P~iLV~sg~p~~~~~li~la~~lt~~~---G~ltv~~i~p~~~~--~--------------~l~~q-l~~l~~~l~~r-- 78 (294)
T 3g40_A 21 ANLLVPVEDPRELMGTFDFLRDITYPK---GSVKLLGLAGNTDK--E--------------NLLSQ-LPSISEGFQEE-- 78 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHTTT---CEEEEEECC---CT--T--------------CHHHH-HHHHHHHHHHT--
T ss_pred CcEEEecCCchhhhhHHHHHHHhccCc---eeEEEEEEccCCCc--c--------------HHHHH-HHHHHHHHHhC--
Confidence 469999999999999999999998765 46888888432111 1 10122 35555554432
Q ss_pred CeEEEEEEEEcCCCChHHHHHHHHHhc-----CCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEEecCCCCcc
Q 044163 526 AVAVQPFIMISPYDTMHQSICRLLKDK-----FIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIFVDRGLNSC 600 (783)
Q Consensus 526 ~v~v~~~t~vs~~~~m~~dI~~~A~e~-----~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIlVdRg~~~~ 600 (783)
+ ++.++++-...+..+++..+.+.+ +.+.|++||..+- + ....+.+++....+. --.|.+|-+.... +
T Consensus 79 ~--v~a~~~vi~a~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~--e-~~~~y~~~i~~~~~~-~~nVlil~~~~~~-~ 151 (294)
T 3g40_A 79 G--VFSSWTIIDTAEFEENLVVGMEALTGSFFRPSILFLRLPENR--D-RDEEIREIIRKASMY-RMGVLLFSKHPQA-G 151 (294)
T ss_dssp T--CEEEEEEC-----CHHHHHHHHHHTTCSSCSCEEEEECCSSG--G-GHHHHHHHHHHHHHT-TCEEEEEECCTTT-T
T ss_pred C--ceeEEEEEecCChhHHHHHHHHHcCCCCCCCCEEEeCCCCCh--h-hhHHHHHHHHHHHHh-CceEEEEecCCcc-C
Confidence 2 456666666678999999998887 5689999996211 1 123567777665444 4566665332221 1
Q ss_pred ccccccCCcccEEEEeccC--------C--ccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHH
Q 044163 601 INTAKSAKFCYNVAVFFIG--------G--PDDREAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFV 670 (783)
Q Consensus 601 ~~~~~~~~~~~~I~v~f~G--------G--~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~ 670 (783)
. ...++|=+=..| | .+-..++-+|-.+..+.++++.++.++++ |.+++..+..++++.
T Consensus 152 f------g~~~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d------e~a~~~a~~~l~~Lv 219 (294)
T 3g40_A 152 L------GRQNLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT------AIQAQAAENFLQSLA 219 (294)
T ss_dssp T------TTSCEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS------HHHHHHHHHHHHHHH
T ss_pred C------CCCceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC------HHHHHHHHHHHHHHH
Confidence 1 123455444222 2 24456888898998889999999999864 233445567888887
Q ss_pred hhcCCCCCEEEEEEEecChHHHHHHHHhhccCCcEEEEcccCC
Q 044163 671 ASNFGNASVVCRQIVANDTKQLVSAVRSLERSNDLVIVGRQQA 713 (783)
Q Consensus 671 ~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DLvIVG~~~~ 713 (783)
+.. . ...++. . +. .+..++|++. .+-||+++|=...
T Consensus 220 ~~~-R-i~a~~~-v-v~--~~F~~il~~s-~~ADL~flGl~~~ 255 (294)
T 3g40_A 220 ELA-R-IPNVKM-Q-VL--RENPIKSSKL-PFASLHIFSLDPN 255 (294)
T ss_dssp HHH-T-CCSCEE-E-EE--SSCTTTSSSC-CCCSEEEEECCSS
T ss_pred HHh-c-CCceEE-E-ec--CchHHHHhhC-cCCCEEEEcCCCC
Confidence 764 1 122222 2 32 3455677774 6799999998654
No 42
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=71.17 E-value=9.8 Score=38.52 Aligned_cols=92 Identities=16% Similarity=0.265 Sum_probs=55.1
Q ss_pred CccHHHHHHHHHHHhcCCCe--EEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEE--EE---ecChHHH
Q 044163 620 GPDDREAMALVSRMSGHPGV--SITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQ--IV---ANDTKQL 692 (783)
Q Consensus 620 G~ddreAL~~a~rma~~~~~--~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e--~~---v~~~~e~ 692 (783)
.|.|.+|++.|.|+++. +. +++++.+.++. . ++.+++.... +-+++-..+ .. --+...+
T Consensus 36 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~----------a-~~~lr~ala~--GaD~vi~v~~d~~~~~~~~~~~~ 101 (252)
T 1efp_B 36 NPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVKQ----------A-AETLRTALAM--GADRAILVVAADDVQQDIEPLAV 101 (252)
T ss_dssp CHHHHHHHHHHHHHHTT-TSCSEEEEEEEESGG----------G-HHHHHHHHHH--TCSEEEEEECCSSTTCCCCHHHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh----------H-HHHHHHHHhc--CCCEEEEEecChhhcccCCHHHH
Confidence 47899999999999987 65 89998876421 1 1223333222 223443332 00 1123444
Q ss_pred HHHHHhh--ccCCcEEEEcccCC-----CCchhhhccCCC
Q 044163 693 VSAVRSL--ERSNDLVIVGRQQA-----FSSQLEEEMRPW 725 (783)
Q Consensus 693 ~~~i~~~--~~~~DLvIVG~~~~-----~~s~~~~gl~~W 725 (783)
..+|.+. ..+||+|+.|++.. ...|.+..+.+|
T Consensus 102 a~~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 141 (252)
T 1efp_B 102 AKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGW 141 (252)
T ss_dssp HHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 4455544 24699999999873 245777777777
No 43
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=68.43 E-value=9.8 Score=38.60 Aligned_cols=92 Identities=15% Similarity=0.210 Sum_probs=54.7
Q ss_pred CccHHHHHHHHHHHhcCCCe--EEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEE--EE---ecChHHH
Q 044163 620 GPDDREAMALVSRMSGHPGV--SITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQ--IV---ANDTKQL 692 (783)
Q Consensus 620 G~ddreAL~~a~rma~~~~~--~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e--~~---v~~~~e~ 692 (783)
.|.|.+|++.|.|+++. +. +++++.+.++. .++.+++.... +-+++-..+ .. --+...+
T Consensus 39 np~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~-----------a~~~lr~ala~--GaD~vi~v~~d~~~~~~~~~~~~ 104 (255)
T 1efv_B 39 NPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ-----------CQETIRTALAM--GADRGIHVEVPPAEAERLGPLQV 104 (255)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT-----------HHHHHHHHHHH--TCSEEEEEECCHHHHTTCCHHHH
T ss_pred CHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh-----------HHHHHHHHHhc--CCCEEEEEecChhhcccCCHHHH
Confidence 47899999999999987 65 89998876421 11233333222 223443322 00 0123334
Q ss_pred HHHHHhh--ccCCcEEEEcccCC-----CCchhhhccCCC
Q 044163 693 VSAVRSL--ERSNDLVIVGRQQA-----FSSQLEEEMRPW 725 (783)
Q Consensus 693 ~~~i~~~--~~~~DLvIVG~~~~-----~~s~~~~gl~~W 725 (783)
..+|.+. ..+||+|+.|++.. ...|.+..+.+|
T Consensus 105 A~~La~~i~~~~~dlVl~G~~s~d~d~~~v~p~lA~~L~~ 144 (255)
T 1efv_B 105 ARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDW 144 (255)
T ss_dssp HHHHHHHHHHHTCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCEEEEeCcccCCchhhHHHHHHHHhCC
Confidence 4445443 24699999999873 245777777777
No 44
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=66.98 E-value=7.3 Score=39.77 Aligned_cols=93 Identities=13% Similarity=0.181 Sum_probs=55.1
Q ss_pred CccHHHHHHHHHHHhcCCCe--EEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEEEEe---cChHHHHH
Q 044163 620 GPDDREAMALVSRMSGHPGV--SITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQIVA---NDTKQLVS 694 (783)
Q Consensus 620 G~ddreAL~~a~rma~~~~~--~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v---~~~~e~~~ 694 (783)
.|.|.+|++.|.|+++..+. +++++.+.++. . ++.+++.... +-+++-..+--- -+...+..
T Consensus 36 np~d~~ale~A~~Lke~~g~~~~V~av~~G~~~----------~-~~~lr~ala~--GaD~vi~v~d~~~~~~~~~~~a~ 102 (264)
T 1o97_C 36 NEWDDFSLEEAMKIKESSDTDVEVVVVSVGPDR----------V-DESLRKCLAK--GADRAVRVWDDAAEGSDAIVVGR 102 (264)
T ss_dssp CHHHHHHHHHHHHHHHHCSSCCEEEEEEESCGG----------G-HHHHHHHHHT--TCSEEEEECCGGGTTCCHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCceEEEEEeCchh----------H-HHHHHHHHhc--CCCEEEEEcCcccccCCHHHHHH
Confidence 47899999999999976665 89988876421 1 1233333222 223443322000 12334444
Q ss_pred HHHhh--ccCCcEEEEcccCC-----CCchhhhccCCC
Q 044163 695 AVRSL--ERSNDLVIVGRQQA-----FSSQLEEEMRPW 725 (783)
Q Consensus 695 ~i~~~--~~~~DLvIVG~~~~-----~~s~~~~gl~~W 725 (783)
+|.+. ..+||+|+.|++.. ...|.+..+.+|
T Consensus 103 ~La~~i~~~~~dlVl~G~~s~d~~~~~v~p~lA~~L~~ 140 (264)
T 1o97_C 103 ILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNW 140 (264)
T ss_dssp HHHHHHHHHCCSEEEEESCCTTTCCCCHHHHHHHHHTC
T ss_pred HHHHHHHhcCCCEEEEcCCccCCchhhHHHHHHHHhCC
Confidence 55544 23699999999873 245777777777
No 45
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=63.65 E-value=74 Score=33.31 Aligned_cols=96 Identities=6% Similarity=-0.069 Sum_probs=52.7
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcccccccccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 044163 281 AMFGLVIPAGPPLGSALVEKSELIITHFFLPFFYIRLGQLTDIHSIE-SWRSFLALELILVSAYLGKVVGCILGLISFKA 359 (783)
Q Consensus 281 F~aGl~l~~~~~~~~~l~~kl~~~~~~~f~PlFFv~~G~~~dl~~l~-~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~ 359 (783)
.++|...|+.... ++.. ....+++-+...|++++...+. ....+.......+.-++...+.++..++.++.
T Consensus 28 ~~lg~~~P~~~~~-------~~~~-i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~l 99 (332)
T 3zux_A 28 AAAAFFAPDTFKW-------AGPY-IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNL 99 (332)
T ss_dssp HHHHHHCGGGTGG-------GGGG-HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcchhhhh-------hHHH-HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3677777764221 2222 2345666777889999988872 11233333444445566677777777777777
Q ss_pred ChHHHHHHHH-HhhhhHHHHHHHHhh
Q 044163 360 SIRNALLFSC-FLNIKGIIELMHFLR 384 (783)
Q Consensus 360 ~~~~~l~lg~-~m~~rG~~~lii~~i 384 (783)
+.....-+-+ ..+|-|..+.++...
T Consensus 100 ~~~~~~Glil~~~~P~~~~s~v~t~~ 125 (332)
T 3zux_A 100 PAEIAVGVILVGCCPGGTASNVMTYL 125 (332)
T ss_dssp CHHHHHHHHHHHHSCCCTHHHHHHHH
T ss_pred ChHHHHHHHHHhcCCchhHHHHHHHH
Confidence 6533322222 124445555554443
No 46
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=51.98 E-value=2.5 Score=28.49 Aligned_cols=27 Identities=11% Similarity=0.101 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHhccc
Q 044163 151 RFYFYISFLASRSSFAVVVDAISELKL 177 (783)
Q Consensus 151 ~~~l~lg~~ls~TS~~Vv~~iL~el~l 177 (783)
..++++|+++|.|++..+..++++++.
T Consensus 4 ~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 4 KDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 457789999999999999999999885
No 47
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=42.88 E-value=1.1e+02 Score=26.20 Aligned_cols=82 Identities=20% Similarity=0.321 Sum_probs=56.0
Q ss_pred EEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEEEEecChHH
Q 044163 612 NVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQIVANDTKQ 691 (783)
Q Consensus 612 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e 691 (783)
.|.+.| ..|.|-|.-..|=.++.|+++.++. ++ .+ |+ .-.+-+++|.+.. +.. +.|+|-+|
T Consensus 3 qifvvf---ssdpeilkeivreikrqgvrvvlly---sd---qd--ek-rrrerleefekqg-----vdv--rtvedked 63 (162)
T 2l82_A 3 QIFVVF---SSDPEILKEIVREIKRQGVRVVLLY---SD---QD--EK-RRRERLEEFEKQG-----VDV--RTVEDKED 63 (162)
T ss_dssp EEEEEE---ESCHHHHHHHHHHHHHTTCEEEEEE---CC---SC--HH-HHHHHHHHHHTTT-----CEE--EECCSHHH
T ss_pred eEEEEe---cCCHHHHHHHHHHHHhCCeEEEEEe---cC---ch--HH-HHHHHHHHHHHcC-----Cce--eeeccHHH
Confidence 578888 6678888877777778899998887 21 12 12 2236688887753 332 44889999
Q ss_pred HHHHHHhhc---cCCcEEEEcccC
Q 044163 692 LVSAVRSLE---RSNDLVIVGRQQ 712 (783)
Q Consensus 692 ~~~~i~~~~---~~~DLvIVG~~~ 712 (783)
.-+-|+++= ..-|.+++-.+.
T Consensus 64 frenireiwerypqldvvvivttd 87 (162)
T 2l82_A 64 FRENIREIWERYPQLDVVVIVTTD 87 (162)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEECC
T ss_pred HHHHHHHHHHhCCCCcEEEEEecC
Confidence 999999873 345777766554
No 48
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=32.84 E-value=19 Score=29.93 Aligned_cols=68 Identities=12% Similarity=0.144 Sum_probs=43.3
Q ss_pred EEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEEEEecChHH
Q 044163 612 NVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQIVANDTKQ 691 (783)
Q Consensus 612 ~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e 691 (783)
.|++.. -||.||.+-|.|..+..|+.+-++-.- . . +..-|++-.+++.+. |.-+.|.+++|
T Consensus 52 tivvvv---vddkewaekairfvkslgaqvliiiyd-q-------d-qnrleefsrevrrrg-------fevrtvtspdd 112 (134)
T 2l69_A 52 TIVVVV---VDDKEWAEKAIRFVKSLGAQVLIIIYD-Q-------D-QNRLEEFSREVRRRG-------FEVRTVTSPDD 112 (134)
T ss_dssp EEEEEE---CSSHHHHHHHHHHHHHHCCCCEEEEEC-S-------C-HHHHHHHHHHHHHTT-------CCEEEESSHHH
T ss_pred eEEEEE---EccHHHHHHHHHHHHhcCCeEEEEEEe-C-------c-hhHHHHHHHHHHhcC-------ceEEEecChHH
Confidence 455565 699999999999999988887766521 1 1 222235566666543 12345888877
Q ss_pred HHHHHHh
Q 044163 692 LVSAVRS 698 (783)
Q Consensus 692 ~~~~i~~ 698 (783)
.-..+..
T Consensus 113 fkksler 119 (134)
T 2l69_A 113 FKKSLER 119 (134)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6655443
No 49
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=32.82 E-value=41 Score=35.25 Aligned_cols=56 Identities=11% Similarity=0.055 Sum_probs=39.1
Q ss_pred cEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhc
Q 044163 611 YNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASN 673 (783)
Q Consensus 611 ~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 673 (783)
.+++|.|-||+|+--.|.++.+.....+..+.++++-..- +-..+.++++++.++.
T Consensus 47 ~~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg~-------~~~et~~~v~~~~~~~ 102 (325)
T 1zun_A 47 DNPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTRW-------KFQEMYRFRDQMVEEM 102 (325)
T ss_dssp SSEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCSC-------CCHHHHHHHHHHHHTT
T ss_pred CCEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECCC-------CCHHHHHHHHHHHHHc
Confidence 3789999999999999999998876545566777763221 1112346777777765
No 50
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=32.74 E-value=97 Score=26.15 Aligned_cols=54 Identities=9% Similarity=0.052 Sum_probs=40.8
Q ss_pred ChHHHHHHHHHhcCCCEEEEccc--CCCcccCCCcchhHHHHHHhccCCCceEEEecC
Q 044163 540 TMHQSICRLLKDKFIPLILVPLF--PNGEVQGPNGTLHNFNINILHYAPCTVGIFVDR 595 (783)
Q Consensus 540 ~m~~dI~~~A~e~~a~lIIlp~h--~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIlVdR 595 (783)
...+.|.++++|++++.||+|.- .||.........+.+.+++-++ +.+| .++|-
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~mdGt~~~~~~~~~~f~~~L~~~-~lpV-~~~DE 93 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRTDLKESAQAGKVLPLVEALRAR-GVEV-ELWDE 93 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCCCSSSCCCSSTTHHHHHHHHHT-TCEE-EEECC
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCCCCCcCHHHHHHHHHHHHHhcC-CCCE-EEECC
Confidence 34577999999999999999876 5777655556678888888776 7776 44553
No 51
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=28.69 E-value=2e+02 Score=29.57 Aligned_cols=91 Identities=11% Similarity=0.090 Sum_probs=53.5
Q ss_pred cEEEEeccCCccHHHHHHHHHHHh-c-----------------CCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhh
Q 044163 611 YNVAVFFIGGPDDREAMALVSRMS-G-----------------HPGVSITVFRINLEENIVENESEKHIDEVVMNEFVAS 672 (783)
Q Consensus 611 ~~I~v~f~GG~ddreAL~~a~rma-~-----------------~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~ 672 (783)
.+++|-|.||+|+--.|.++.+.. + .++.++.++.+-.. .+-....++++++.++
T Consensus 54 ~~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg-------~~fpet~~fv~~~~~~ 126 (306)
T 2wsi_A 54 GEISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQE-------ETFPTLENFVLETSER 126 (306)
T ss_dssp SSEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCT-------TCCHHHHHHHHHHHHH
T ss_pred CCEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCC-------CCCHHHHHHHHHHHHH
Confidence 379999999999999999887763 1 13456777776432 1122234777878776
Q ss_pred cCCCCCEEEEEEEec-------ChHHHHHHHHhhccCCcEEEEcccCCC
Q 044163 673 NFGNASVVCRQIVAN-------DTKQLVSAVRSLERSNDLVIVGRQQAF 714 (783)
Q Consensus 673 ~~~~~~v~~~e~~v~-------~~~e~~~~i~~~~~~~DLvIVG~~~~~ 714 (783)
.. +.... +. .-.+......+.....+.+++|.|++.
T Consensus 127 yg----l~l~v--~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 127 YC----LSLYE--SQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp TT----EEEEE--CCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred cC----CCEEE--EeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 52 33211 21 111222222222345789999998754
No 52
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=25.51 E-value=3.1e+02 Score=25.95 Aligned_cols=143 Identities=10% Similarity=0.117 Sum_probs=81.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhcCCCEEEEcccCCCcccCCCcchhHHHHHHhccCCCceEEEecCCCCccccccccCCcc
Q 044163 531 PFIMISPYDTMHQSICRLLKDKFIPLILVPLFPNGEVQGPNGTLHNFNINILHYAPCTVGIFVDRGLNSCINTAKSAKFC 610 (783)
Q Consensus 531 ~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~g~~~~~~~~~~~~~~~Vl~~ApCsVgIlVdRg~~~~~~~~~~~~~~ 610 (783)
+...++||..|.+-+-+++.|.+.++-+.= +.++. .. ...++. +.-|+ |++.||.... .+. ....
T Consensus 6 ~I~~iapy~~l~~~~~~i~~e~~~~i~i~~----~~l~~---~v-~~a~~~--~~~~d--VIISRGgta~--~lr-~~~~ 70 (196)
T 2q5c_A 6 KIALISQNENLLNLFPKLALEKNFIPITKT----ASLTR---AS-KIAFGL--QDEVD--AIISRGATSD--YIK-KSVS 70 (196)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTCEEEEEE----CCHHH---HH-HHHHHH--TTTCS--EEEEEHHHHH--HHH-TTCS
T ss_pred cEEEEEccHHHHHHHHHHHhhhCCceEEEE----CCHHH---HH-HHHHHh--cCCCe--EEEECChHHH--HHH-HhCC
Confidence 456677888888877777777766543322 22211 11 123333 34577 6688885410 010 1112
Q ss_pred cEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEEEEecChH
Q 044163 611 YNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQIVANDTK 690 (783)
Q Consensus 611 ~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~ 690 (783)
..|+-.-..|-|=-.||..|++..+ ++-++.+-... ... +.+.++-. .++.. ..+++.+
T Consensus 71 iPVV~I~~s~~Dil~al~~a~~~~~----kIavvg~~~~~--------~~~--~~~~~ll~-----~~i~~--~~~~~~~ 129 (196)
T 2q5c_A 71 IPSISIKVTRFDTMRAVYNAKRFGN----ELALIAYKHSI--------VDK--HEIEAMLG-----VKIKE--FLFSSED 129 (196)
T ss_dssp SCEEEECCCHHHHHHHHHHHGGGCS----EEEEEEESSCS--------SCH--HHHHHHHT-----CEEEE--EEECSGG
T ss_pred CCEEEEcCCHhHHHHHHHHHHhhCC----cEEEEeCcchh--------hHH--HHHHHHhC-----CceEE--EEeCCHH
Confidence 3455555567888889998887543 78888763221 111 22333322 23433 4478889
Q ss_pred HHHHHHHhhc-cCCcEEEEcc
Q 044163 691 QLVSAVRSLE-RSNDLVIVGR 710 (783)
Q Consensus 691 e~~~~i~~~~-~~~DLvIVG~ 710 (783)
|..+.++++. +++|.+ ||.
T Consensus 130 e~~~~i~~l~~~G~~vv-VG~ 149 (196)
T 2q5c_A 130 EITTLISKVKTENIKIV-VSG 149 (196)
T ss_dssp GHHHHHHHHHHTTCCEE-EEC
T ss_pred HHHHHHHHHHHCCCeEE-ECC
Confidence 9999999875 568874 553
No 53
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=25.28 E-value=1.5 Score=29.53 Aligned_cols=27 Identities=11% Similarity=0.027 Sum_probs=23.4
Q ss_pred HHHHHHHHhchhHHHHHHHHHHhcCCC
Q 044163 264 TLGFIYEGLNSNYMIGAAMFGLVIPAG 290 (783)
Q Consensus 264 ~~~~lae~lG~~~~lGaF~aGl~l~~~ 290 (783)
+.+.++|.+++|++++.+.+|+.+.+.
T Consensus 5 ~~Yl~AE~~~lSGIlavv~~Gi~~~~y 31 (33)
T 2k3c_A 5 MAYLSAELFHLSGIMALIASGVVMRPK 31 (33)
T ss_dssp TTTGGGSSSTTTTTTTTTTTTSCCCCC
T ss_pred HHHHHHHHhCcChHHHHHHHHHHHhhc
Confidence 456788999999999999999998764
No 54
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=24.68 E-value=1.1e+02 Score=33.24 Aligned_cols=95 Identities=11% Similarity=0.155 Sum_probs=59.2
Q ss_pred cEEEEeccCCccHHHHHHHHHHHhcC-CCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhcCCCCCEEEEEEEe-c-
Q 044163 611 YNVAVFFIGGPDDREAMALVSRMSGH-PGVSITVFRINLEENIVENESEKHIDEVVMNEFVASNFGNASVVCRQIVA-N- 687 (783)
Q Consensus 611 ~~I~v~f~GG~ddreAL~~a~rma~~-~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~v~~~e~~v-~- 687 (783)
.+|+|.+-||+|.--.|.++.++.++ .+.++.++++-..-. . +...|.+.++++..+.. .+.......+ .
T Consensus 14 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr---~--~s~~~~~~v~~~~~~lg--i~~~v~~~~~~~~ 86 (433)
T 1ni5_A 14 RQILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLS---A--NADAWVTHCENVCQQWQ--VPLVVERVQLAQE 86 (433)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCC---S--SHHHHHHHHHHHHHHTT--CCEEEECCCCCCS
T ss_pred CEEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCC---c--ccHHHHHHHHHHHHHcC--CcEEEEEecCCCC
Confidence 58999999999999999999998877 889999999853311 1 12234567777777652 2222111111 1
Q ss_pred --ChHHHHH-----HHHhhccCCcEEEEcccC
Q 044163 688 --DTKQLVS-----AVRSLERSNDLVIVGRQQ 712 (783)
Q Consensus 688 --~~~e~~~-----~i~~~~~~~DLvIVG~~~ 712 (783)
+.++... .+.+.+.++|.+..|-+.
T Consensus 87 ~~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~ 118 (433)
T 1ni5_A 87 GLGIEAQARQARYQAFARTLLPGEVLVTAQHL 118 (433)
T ss_dssp SSTTTTHHHHHHHHHHHHTCCTTEEEECCCCH
T ss_pred CCCHHHHHHHHHHHHHHHHHhhCCeEEeeccc
Confidence 1122222 234445568988888754
No 55
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes}
Probab=24.62 E-value=85 Score=32.20 Aligned_cols=47 Identities=11% Similarity=0.262 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHhhcCCCCCEEEEEEEecChHHHHHHHHhhccCCcEEEEcc
Q 044163 660 HIDEVVMNEFVASNFGNASVVCRQIVANDTKQLVSAVRSLERSNDLVIVGR 710 (783)
Q Consensus 660 ~~d~~~l~~~~~~~~~~~~v~~~e~~v~~~~e~~~~i~~~~~~~DLvIVG~ 710 (783)
-.|++++++|.+++ ..+|.|.. ..+.+++...++.-...+|+++++.
T Consensus 21 y~~~~~i~~Fek~t--GIkV~~~~--~~s~e~~~~kl~ag~~~~DVv~~~~ 67 (333)
T 4gl0_A 21 YIDPSLITKFEKET--GIKVIYQT--FDSNEAMMTKIEQGGTTFDIAVPSD 67 (333)
T ss_dssp CSCHHHHHHHHHHH--CCEEEEEE--ESCHHHHHHHHHTCSSCCSEECCBH
T ss_pred cCCHHHHHHHHHHH--CCEEEEEe--CCCHHHHHHHHHcCCCCCeEEEeCH
Confidence 34567899999987 46788755 6777767666665345699998664
No 56
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=24.17 E-value=1.2e+02 Score=33.13 Aligned_cols=59 Identities=14% Similarity=0.161 Sum_probs=44.8
Q ss_pred cEEEEeccCCccHHHHHHHHHHHhcCCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhc
Q 044163 611 YNVAVFFIGGPDDREAMALVSRMSGHPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASN 673 (783)
Q Consensus 611 ~~I~v~f~GG~ddreAL~~a~rma~~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 673 (783)
.+|+|.+-||+|.--.|.++.++.++.+.++.++++...-. ..+...|.+.++++..+.
T Consensus 19 ~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglr----g~~s~~~~~~v~~~~~~l 77 (464)
T 3a2k_A 19 AAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFR----GRESEEEMEFVKRFCVER 77 (464)
T ss_dssp SBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTC----THHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCC----ccccHHHHHHHHHHHHHc
Confidence 57999999999999999999998888889999999854311 011234557788887765
No 57
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=23.74 E-value=1.1e+02 Score=31.50 Aligned_cols=58 Identities=17% Similarity=0.223 Sum_probs=42.7
Q ss_pred cEEEEeccCCccHHHHHHHHHHHhcCCCeE-EEEEEeeecCcccccchhhhhHHHHHHHHHhhc
Q 044163 611 YNVAVFFIGGPDDREAMALVSRMSGHPGVS-ITVFRINLEENIVENESEKHIDEVVMNEFVASN 673 (783)
Q Consensus 611 ~~I~v~f~GG~ddreAL~~a~rma~~~~~~-ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 673 (783)
.+|+|.+-||+|.--.+.++.+..+..+.+ +.++++-..-. .+...|.+.++++..+.
T Consensus 25 ~~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g~r-----~~s~~~~~~v~~~a~~l 83 (317)
T 1wy5_A 25 RRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHMLR-----ESAERDEEFCKEFAKER 83 (317)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECCSS-----THHHHHHHHHHHHHHHH
T ss_pred CEEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECCCC-----cccHHHHHHHHHHHHHc
Confidence 589999999999999999999888777777 88888753311 11233456777777765
No 58
>3s40_A Diacylglycerol kinase; structural genomics, the center for structural genomics of infectious diseases, csgid, transfer; 2.10A {Bacillus anthracis} PDB: 3t5p_A
Probab=23.16 E-value=86 Score=32.18 Aligned_cols=36 Identities=8% Similarity=0.049 Sum_probs=17.1
Q ss_pred ccEEEEeccC--Cc-cHHHHHHHHHHHhcCCCeEEEEEE
Q 044163 610 CYNVAVFFIG--GP-DDREAMALVSRMSGHPGVSITVFR 645 (783)
Q Consensus 610 ~~~I~v~f~G--G~-ddreAL~~a~rma~~~~~~ltv~~ 645 (783)
.+|+++++.. |. ..++.++-+.+.-+..+..+++..
T Consensus 8 m~~~~vi~Np~sG~~~~~~~~~~i~~~l~~~~~~~~~~~ 46 (304)
T 3s40_A 8 FEKVLLIVNPKAGQGDLHTNLTKIVPPLAAAFPDLHILH 46 (304)
T ss_dssp CSSEEEEECTTCSSSCHHHHHHHHHHHHHHHCSEEEEEE
T ss_pred CCEEEEEECcccCCCchHHHHHHHHHHHHHcCCeEEEEE
Confidence 3566666654 22 223333334443334456665554
No 59
>3gxq_A Putative regulator of transfer genes ARTA; ribbon-helix-helix, plasmid, DNA binding protein/DNA complex; HET: DNA; 2.35A {Staphylococcus aureus subsp}
Probab=23.09 E-value=51 Score=23.23 Aligned_cols=26 Identities=19% Similarity=0.482 Sum_probs=19.5
Q ss_pred CeEEEEEEEEcCCCChHHHHHHHHHhcCCC
Q 044163 526 AVAVQPFIMISPYDTMHQSICRLLKDKFIP 555 (783)
Q Consensus 526 ~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~ 555 (783)
.|+.+ .-|+| +|.++|+..|+|+..|
T Consensus 11 kvslh--llvdp--dmkdeiikyaqekdfd 36 (54)
T 3gxq_A 11 KVSLH--LLVDP--DMKDEIIKYAQEKDFD 36 (54)
T ss_dssp CEEEE--EEECH--HHHHHHHHHHHHHSTT
T ss_pred eeEEE--EeeCC--chhHHHHHHHHHccch
Confidence 45544 45665 9999999999999654
No 60
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=20.31 E-value=3.5e+02 Score=27.81 Aligned_cols=89 Identities=9% Similarity=0.123 Sum_probs=49.7
Q ss_pred EEEEeccCCccHHHHHHHHHHHh-c-----------------CCCeEEEEEEeeecCcccccchhhhhHHHHHHHHHhhc
Q 044163 612 NVAVFFIGGPDDREAMALVSRMS-G-----------------HPGVSITVFRINLEENIVENESEKHIDEVVMNEFVASN 673 (783)
Q Consensus 612 ~I~v~f~GG~ddreAL~~a~rma-~-----------------~~~~~ltv~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~ 673 (783)
++++.|.||+|+--.|.++.+.- + .|...+.|+.+-.. .+-.++. ++++++.++.
T Consensus 60 ~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG-----~~FpET~--ef~d~~~~~y 132 (308)
T 3fwk_A 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHD-----DTFKTLE--NFIEETSLRY 132 (308)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCT-----TCCHHHH--HHHHHHHHHT
T ss_pred CEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCC-----CCCHHHH--HHHHHHHHHh
Confidence 68999999999999999987742 1 12346777775321 1111222 6777777765
Q ss_pred CCCCCEEEEEEEecC-----hHHHHHHHHhhccCCcEEEEcccCC
Q 044163 674 FGNASVVCRQIVAND-----TKQLVSAVRSLERSNDLVIVGRQQA 713 (783)
Q Consensus 674 ~~~~~v~~~e~~v~~-----~~e~~~~i~~~~~~~DLvIVG~~~~ 713 (783)
. +.... ... -.+-..-+++....+|.++.|.|+.
T Consensus 133 g----L~L~v--~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 133 S----LSLYE--SDRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp T----EEEEE--CCTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred C----CcEEE--eCCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 2 22111 111 1122223344445699999999986
No 61
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=20.31 E-value=34 Score=38.01 Aligned_cols=38 Identities=26% Similarity=0.334 Sum_probs=26.6
Q ss_pred ccCCcEEEEcccCCCCchhhhccCCCCCCCccchhhhhhhcCCCCCCcccEEEEeeecc
Q 044163 700 ERSNDLVIVGRQQAFSSQLEEEMRPWVEYEELGIIGDLLASADFVGGMMSILVIQSVES 758 (783)
Q Consensus 700 ~~~~DLvIVG~~~~~~s~~~~gl~~W~e~~eLG~igd~Las~df~~~~~sVLVvqq~~~ 758 (783)
+.+||.||||++-.+ .++...|+. ..+.+|||+.+...
T Consensus 15 ~~~yD~IIVGsG~aG-----------------~v~A~rLse----~~~~~VLvLEaG~~ 52 (526)
T 3t37_A 15 APNCDIVIVGGGSAG-----------------SLLAARLSE----DPDSRVLLIEAGEE 52 (526)
T ss_dssp --CEEEEEECCSHHH-----------------HHHHHHHTT----STTSCEEEECSSBC
T ss_pred CCCeeEEEECccHHH-----------------HHHHHHHHh----CCCCeEEEEcCCCC
Confidence 457999999987543 367777876 34568999987643
Done!