BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044164
(714 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin
Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin
Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin
Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin
Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin
Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein- Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein- Substrate Interactions In Auxin Perception And
Signaling
Length = 594
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 16 LPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERSTRKSLALRGN 60
P+ ++ ++FS I + RN++SLVC W ++ER R+ + + GN
Sbjct: 9 FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFI-GN 52
>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGK|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And An
Incomplete Jaz1 Degron
pdb|3OGL|B Chain B, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|D Chain D, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|F Chain F, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|H Chain H, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|J Chain J, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|L Chain L, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|N Chain N, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGL|P Chain P, Structure Of Coi1-Ask1 In Complex With Ja-Isoleucine And
The Jaz1 Degron
pdb|3OGM|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And
The Jaz1 Degron
pdb|3OGM|D Chain D, Structure Of Coi1-Ask1 In Complex With Coronatine And
The Jaz1 Degron
pdb|3OGM|F Chain F, Structure Of Coi1-Ask1 In Complex With Coronatine And
The Jaz1 Degron
pdb|3OGM|H Chain H, Structure Of Coi1-Ask1 In Complex With Coronatine And
The Jaz1 Degron
pdb|3OGM|J Chain J, Structure Of Coi1-Ask1 In Complex With Coronatine And
The Jaz1 Degron
pdb|3OGM|L Chain L, Structure Of Coi1-Ask1 In Complex With Coronatine And
The Jaz1 Degron
pdb|3OGM|N Chain N, Structure Of Coi1-Ask1 In Complex With Coronatine And
The Jaz1 Degron
pdb|3OGM|P Chain P, Structure Of Coi1-Ask1 In Complex With Coronatine And
The Jaz1 Degron
Length = 592
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 26/40 (65%)
Query: 18 DAIMSNIFSLITDTRTRNAMSLVCLKWCKLERSTRKSLAL 57
D ++ + + ITD + R++ SLVC +W K++ TR+ + +
Sbjct: 18 DDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTM 57
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 294 GDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICRE 345
G+FF+ L LE LVL NN++ PA LN + + L +V IC E
Sbjct: 122 GNFFKPLTSLEMLVLR-DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 32.3 bits (72), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 294 GDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICRE 345
G+FF+ L LE LVL NN++ PA LN + + L +V IC E
Sbjct: 122 GNFFKPLTSLEMLVLR-DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEE 172
>pdb|1C1X|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 592 FALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSL 637
AL APR D S W R EN++ NYW D++ + +
Sbjct: 81 IALPAPRHSIDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADM 126
>pdb|1BW9|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 592 FALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSL 637
AL APR D S W R EN++ NYW D++ + +
Sbjct: 82 IALPAPRHSIDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADM 127
>pdb|1C1D|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 592 FALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSL 637
AL APR D S W R EN++ NYW D++ + +
Sbjct: 81 IALPAPRHSIDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADM 126
>pdb|1BXG|A Chain A, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 592 FALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSL 637
AL APR D S W R EN++ NYW D++ + +
Sbjct: 82 IALPAPRHSIDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADM 127
>pdb|1C1D|B Chain B, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nadh And L-Phenylalanine
Length = 355
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 592 FALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSL 637
AL APR D S W R EN++ NYW D++ + +
Sbjct: 81 IALPAPRHSIDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADM 126
>pdb|1BW9|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Phenylpyruvate
Length = 356
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 592 FALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSL 637
AL APR D S W R EN++ NYW D++ + +
Sbjct: 82 IALPAPRHSIDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADM 127
>pdb|1C1X|A Chain A, L-Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And L-3-Phenyllactate
Length = 355
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 592 FALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSL 637
AL APR D S W R EN++ NYW D++ + +
Sbjct: 81 IALPAPRHSIDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADM 126
>pdb|1BXG|B Chain B, Phenylalanine Dehydrogenase Structure In Ternary Complex
With Nad+ And Beta-Phenylpropionate
Length = 356
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 592 FALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSL 637
AL APR D S W R EN++ NYW D++ + +
Sbjct: 82 IALPAPRHSIDPSTWARILRIHAENIDKLSGNYWTGPDVNTNSADM 127
>pdb|1SUU|A Chain A, Structure Of Dna Gyrase A C-Terminal Domain
Length = 312
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
Query: 347 DSSMPAAG------VALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFE 391
DSS + G + L E L+IKNS DLTD A + ++ + +FE
Sbjct: 80 DSSRASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFE 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,482,444
Number of Sequences: 62578
Number of extensions: 751214
Number of successful extensions: 1419
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1403
Number of HSP's gapped (non-prelim): 18
length of query: 714
length of database: 14,973,337
effective HSP length: 106
effective length of query: 608
effective length of database: 8,340,069
effective search space: 5070761952
effective search space used: 5070761952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)