Query 044164
Match_columns 714
No_of_seqs 550 out of 3066
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 12:03:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044164.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044164hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 9.7E-30 2.1E-34 259.5 9.9 365 14-459 73-447 (483)
2 PLN00113 leucine-rich repeat r 99.9 4.5E-23 9.7E-28 252.0 13.5 127 515-683 451-582 (968)
3 PLN00113 leucine-rich repeat r 99.9 4.5E-22 9.7E-27 243.2 12.6 486 69-663 90-590 (968)
4 KOG2120 SCF ubiquitin ligase, 99.9 1.3E-21 2.7E-26 191.9 12.4 254 4-338 90-347 (419)
5 KOG4341 F-box protein containi 99.9 9.6E-23 2.1E-27 208.6 4.4 259 153-456 129-390 (483)
6 KOG1947 Leucine rich repeat pr 99.5 5.1E-14 1.1E-18 158.7 9.8 35 16-51 48-82 (482)
7 KOG1947 Leucine rich repeat pr 99.5 6E-14 1.3E-18 158.1 9.7 158 288-453 282-442 (482)
8 cd00116 LRR_RI Leucine-rich re 99.5 3E-12 6.6E-17 136.2 20.7 142 295-446 159-314 (319)
9 KOG0444 Cytoskeletal regulator 99.5 5.8E-15 1.3E-19 157.6 -1.7 372 160-691 6-384 (1255)
10 KOG2120 SCF ubiquitin ligase, 99.4 1.2E-13 2.7E-18 136.1 6.1 205 190-442 185-390 (419)
11 cd00116 LRR_RI Leucine-rich re 99.4 9.1E-12 2E-16 132.5 20.8 271 105-423 20-318 (319)
12 KOG4194 Membrane glycoprotein 99.4 1.8E-14 3.9E-19 153.3 -1.4 60 539-613 388-448 (873)
13 KOG1909 Ran GTPase-activating 99.2 7.5E-11 1.6E-15 119.6 13.0 276 129-438 28-324 (382)
14 KOG4194 Membrane glycoprotein 99.2 2.4E-12 5.3E-17 137.3 1.7 343 191-682 79-426 (873)
15 PLN03210 Resistant to P. syrin 99.2 1.9E-11 4.2E-16 150.8 9.6 82 299-396 655-736 (1153)
16 PLN03210 Resistant to P. syrin 99.2 1.1E-10 2.4E-15 144.1 12.1 130 300-452 777-907 (1153)
17 KOG1909 Ran GTPase-activating 99.1 1.2E-09 2.6E-14 110.9 12.9 280 152-464 21-322 (382)
18 KOG0444 Cytoskeletal regulator 99.0 9.5E-12 2.1E-16 133.4 -4.8 273 106-450 30-302 (1255)
19 KOG0618 Serine/threonine phosp 98.8 9.7E-11 2.1E-15 131.7 -5.5 127 412-613 359-485 (1081)
20 KOG0618 Serine/threonine phosp 98.8 1.3E-09 2.8E-14 122.8 0.4 83 357-450 239-321 (1081)
21 KOG3207 Beta-tubulin folding c 98.7 9E-09 1.9E-13 107.4 2.5 189 158-396 118-312 (505)
22 KOG0472 Leucine-rich repeat pr 98.6 1.6E-10 3.4E-15 118.8 -11.0 106 514-659 433-538 (565)
23 PRK15387 E3 ubiquitin-protein 98.5 3.6E-08 7.8E-13 114.2 3.6 261 161-593 201-461 (788)
24 KOG3207 Beta-tubulin folding c 98.5 3.8E-08 8.3E-13 102.8 0.4 217 189-454 120-341 (505)
25 PF12937 F-box-like: F-box-lik 98.4 1.1E-07 2.4E-12 70.0 2.8 35 13-49 2-36 (47)
26 PRK15387 E3 ubiquitin-protein 98.4 2.4E-07 5.2E-12 107.5 6.2 83 516-642 382-464 (788)
27 KOG0472 Leucine-rich repeat pr 98.1 1.8E-08 3.8E-13 104.0 -10.1 115 534-688 426-544 (565)
28 COG5238 RNA1 Ran GTPase-activa 98.0 0.00012 2.6E-09 72.6 13.6 117 300-423 156-283 (388)
29 KOG3665 ZYG-1-like serine/thre 98.0 2.7E-05 5.8E-10 90.2 9.7 91 295-397 142-232 (699)
30 PF00646 F-box: F-box domain; 97.9 2.5E-06 5.5E-11 63.0 0.8 36 12-49 3-38 (48)
31 smart00256 FBOX A Receptor for 97.9 1.3E-05 2.7E-10 56.9 4.3 33 16-49 1-33 (41)
32 KOG3864 Uncharacterized conser 97.9 9.3E-06 2E-10 77.2 4.0 91 352-444 118-209 (221)
33 PF14580 LRR_9: Leucine-rich r 97.8 3.2E-06 6.9E-11 80.8 -0.4 130 299-446 17-147 (175)
34 KOG3665 ZYG-1-like serine/thre 97.8 3.3E-05 7.2E-10 89.4 7.8 61 191-262 123-183 (699)
35 PRK15370 E3 ubiquitin-protein 97.8 3.5E-05 7.5E-10 90.2 6.6 15 577-591 367-381 (754)
36 PRK15370 E3 ubiquitin-protein 97.8 6.4E-05 1.4E-09 88.0 8.8 114 301-447 178-291 (754)
37 COG5238 RNA1 Ran GTPase-activa 97.7 0.001 2.2E-08 66.1 14.6 64 359-424 185-254 (388)
38 KOG4658 Apoptotic ATPase [Sign 97.6 4.7E-05 1E-09 90.5 5.0 60 156-227 566-625 (889)
39 KOG2982 Uncharacterized conser 97.4 5.6E-05 1.2E-09 75.8 1.9 66 356-425 196-262 (418)
40 KOG0617 Ras suppressor protein 97.3 7.9E-05 1.7E-09 68.9 0.7 123 515-681 32-159 (264)
41 KOG3864 Uncharacterized conser 97.2 0.00019 4.2E-09 68.4 2.1 81 361-446 103-183 (221)
42 PF14580 LRR_9: Leucine-rich r 97.1 0.00011 2.3E-09 70.3 -0.5 108 299-423 40-151 (175)
43 KOG2982 Uncharacterized conser 96.9 0.00043 9.3E-09 69.6 1.6 199 149-396 59-260 (418)
44 KOG1259 Nischarin, modulator o 96.8 0.0005 1.1E-08 69.1 1.6 58 358-423 283-340 (490)
45 PLN03150 hypothetical protein; 96.8 0.00054 1.2E-08 79.6 1.9 72 572-667 437-513 (623)
46 KOG1259 Nischarin, modulator o 96.7 0.00049 1.1E-08 69.1 0.7 128 299-449 282-410 (490)
47 PLN03150 hypothetical protein; 96.7 0.00071 1.5E-08 78.6 2.1 77 533-642 433-509 (623)
48 KOG4658 Apoptotic ATPase [Sign 96.6 0.0027 5.8E-08 75.9 5.5 105 106-228 543-650 (889)
49 KOG4237 Extracellular matrix p 96.5 0.00014 2.9E-09 75.8 -4.9 43 326-374 88-130 (498)
50 smart00367 LRR_CC Leucine-rich 96.3 0.0042 9E-08 39.1 2.7 22 385-406 2-23 (26)
51 smart00367 LRR_CC Leucine-rich 96.3 0.0038 8.3E-08 39.3 2.6 24 358-381 1-24 (26)
52 KOG4237 Extracellular matrix p 96.1 0.00071 1.5E-08 70.6 -2.5 255 297-611 87-353 (498)
53 KOG0617 Ras suppressor protein 96.0 0.0041 8.8E-08 57.8 2.6 129 513-668 53-196 (264)
54 PF13855 LRR_8: Leucine rich r 96.0 0.0055 1.2E-07 47.6 2.7 60 516-588 1-60 (61)
55 PRK15386 type III secretion pr 95.6 0.023 5E-07 61.3 6.4 139 217-423 49-188 (426)
56 KOG1859 Leucine-rich repeat pr 95.5 0.0038 8.3E-08 70.0 0.3 48 123-175 76-123 (1096)
57 PRK15386 type III secretion pr 95.4 0.025 5.3E-07 61.1 5.8 59 326-398 49-107 (426)
58 KOG2123 Uncharacterized conser 95.1 0.0064 1.4E-07 60.9 0.4 103 300-418 18-123 (388)
59 KOG2739 Leucine-rich acidic nu 94.9 0.0095 2.1E-07 59.4 0.8 90 354-446 60-150 (260)
60 KOG1859 Leucine-rich repeat pr 94.8 0.0096 2.1E-07 66.9 0.6 82 513-613 206-288 (1096)
61 PF13855 LRR_8: Leucine rich r 94.8 0.016 3.5E-07 44.9 1.7 58 543-613 1-58 (61)
62 KOG2123 Uncharacterized conser 93.5 0.017 3.7E-07 57.9 -0.5 30 109-139 20-49 (388)
63 KOG2997 F-box protein FBX9 [Ge 93.3 0.054 1.2E-06 55.2 2.5 38 11-49 106-147 (366)
64 PLN03215 ascorbic acid mannose 93.0 0.092 2E-06 56.1 3.9 38 10-48 2-39 (373)
65 KOG4308 LRR-containing protein 92.4 0.062 1.3E-06 60.0 1.7 194 191-425 88-303 (478)
66 KOG4308 LRR-containing protein 92.3 0.034 7.3E-07 62.1 -0.5 117 300-424 203-330 (478)
67 PF12799 LRR_4: Leucine Rich r 91.8 0.11 2.5E-06 37.3 1.9 15 355-369 20-34 (44)
68 KOG0281 Beta-TrCP (transducin 91.8 0.16 3.4E-06 52.2 3.6 33 15-48 77-113 (499)
69 PF12799 LRR_4: Leucine Rich r 91.2 0.28 6E-06 35.2 3.4 13 384-396 23-35 (44)
70 PF13516 LRR_6: Leucine Rich r 91.0 0.15 3.3E-06 31.2 1.6 22 385-407 2-23 (24)
71 KOG2739 Leucine-rich acidic nu 90.2 0.18 3.9E-06 50.5 2.3 37 300-338 64-100 (260)
72 KOG0532 Leucine-rich repeat (L 89.9 0.044 9.4E-07 60.3 -2.5 131 513-690 118-252 (722)
73 COG4886 Leucine-rich repeat (L 89.4 0.32 6.8E-06 53.4 3.7 19 573-591 273-291 (394)
74 COG4886 Leucine-rich repeat (L 89.2 0.44 9.5E-06 52.2 4.6 104 301-423 116-220 (394)
75 PF13013 F-box-like_2: F-box-l 88.9 0.54 1.2E-05 41.0 3.9 33 12-46 22-56 (109)
76 PF13516 LRR_6: Leucine Rich r 88.5 0.28 6E-06 30.0 1.4 23 358-381 1-23 (24)
77 smart00368 LRR_RI Leucine rich 79.3 2.9 6.3E-05 26.6 3.2 24 385-409 2-25 (28)
78 KOG1644 U2-associated snRNP A' 78.2 0.95 2.1E-05 43.8 1.0 63 326-396 61-124 (233)
79 KOG1644 U2-associated snRNP A' 72.1 1.8 4E-05 41.9 1.2 89 353-446 58-147 (233)
80 smart00368 LRR_RI Leucine rich 68.3 6 0.00013 25.2 2.6 24 359-383 2-25 (28)
81 KOG3763 mRNA export factor TAP 64.0 9.2 0.0002 42.7 4.6 97 122-226 209-307 (585)
82 KOG0531 Protein phosphatase 1, 64.0 1.8 4E-05 47.8 -0.7 83 326-423 115-197 (414)
83 KOG4579 Leucine-rich repeat (L 60.2 5.1 0.00011 36.6 1.5 106 303-423 29-134 (177)
84 KOG0274 Cdc4 and related F-box 56.9 5.2 0.00011 45.6 1.3 34 15-49 110-143 (537)
85 KOG0531 Protein phosphatase 1, 50.1 9.2 0.0002 42.2 1.9 35 574-613 137-171 (414)
86 PF13504 LRR_7: Leucine rich r 49.1 12 0.00025 20.8 1.3 12 412-423 1-12 (17)
87 KOG3763 mRNA export factor TAP 44.6 26 0.00056 39.2 4.2 86 357-445 216-307 (585)
88 PF00560 LRR_1: Leucine Rich R 43.8 11 0.00024 22.3 0.7 12 579-590 2-13 (22)
89 KOG0532 Leucine-rich repeat (L 40.1 6.4 0.00014 44.0 -1.3 36 386-425 212-247 (722)
90 KOG3926 F-box proteins [Amino 37.4 54 0.0012 33.2 4.7 40 8-48 198-237 (332)
91 PF13306 LRR_5: Leucine rich r 34.9 34 0.00074 30.2 2.8 44 531-585 23-66 (129)
92 KOG4579 Leucine-rich repeat (L 31.3 30 0.00065 31.8 1.7 32 633-667 87-122 (177)
93 PF07723 LRR_2: Leucine Rich R 30.1 44 0.00096 20.9 1.9 25 361-385 2-26 (26)
94 PHA02698 hypothetical protein; 21.8 41 0.0009 26.7 0.7 25 674-701 18-42 (89)
95 PF09372 PRANC: PRANC domain; 21.7 76 0.0017 26.9 2.5 26 10-37 70-95 (97)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.96 E-value=9.7e-30 Score=259.52 Aligned_cols=365 Identities=21% Similarity=0.326 Sum_probs=292.3
Q ss_pred CCCcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhH--hccccEEEEecccccccccccccCcceeeeccccCCCCCCccc
Q 044164 14 DILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLE--RSTRKSLALRGNIRDLNQVPVCFQAINNLDLSCLSPWGHPLLE 91 (714)
Q Consensus 14 ~~LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~--~~~~~~L~l~~~~~~l~~l~~~f~~L~~L~Ls~~~~~~~~~l~ 91 (714)
..||+|++.+||+|| +++.+++++.||+-|+..+ ...|..+.+- .|+ .|.
T Consensus 73 ~~LPpEl~lkvFS~L-Dtksl~r~a~~c~~~n~~AlD~~~~q~idL~-----------t~~----rDv------------ 124 (483)
T KOG4341|consen 73 RSLPPELLLKVFSML-DTKSLCRAAQCCTMWNKLALDGSCWQHIDLF-----------TFQ----RDV------------ 124 (483)
T ss_pred ccCCHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhhccccceeeehh-----------cch----hcC------------
Confidence 459999999999999 9999999999999999954 2234333331 110 000
Q ss_pred cCCCchhHHHHHhhhCCCeeEEEEeecC---hhhHHHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEe
Q 044164 92 SSSNPSLLAKLLSHAFPSVVSLTIYARS---PLTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDL 168 (714)
Q Consensus 92 ~~~~~~l~~~~L~~~~p~L~~L~l~~~~---~~~l~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L 168 (714)
+...+...+.+....+++|.++++. ...+..+...||++++|.+.+|..+ ++..+..+...|++|+.|++
T Consensus 125 ---~g~VV~~~~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~i----Td~s~~sla~~C~~l~~l~L 197 (483)
T KOG4341|consen 125 ---DGGVVENMISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKI----TDSSLLSLARYCRKLRHLNL 197 (483)
T ss_pred ---CCcceehHhhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceec----cHHHHHHHHHhcchhhhhhh
Confidence 1122233344445678999999764 3467778889999999999999866 48888899999999999999
Q ss_pred cCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccccccccCHHHHHHH
Q 044164 169 SHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLGFVGDETLLSI 247 (714)
Q Consensus 169 s~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~~l~~l 247 (714)
..|..+++.... .+...|++|++|+++ ||..++..++..+..+|.+++++.. +|. ..+++.+..+
T Consensus 198 ~~c~~iT~~~Lk---~la~gC~kL~~lNlS----wc~qi~~~gv~~~~rG~~~l~~~~~kGC~-------e~~le~l~~~ 263 (483)
T KOG4341|consen 198 HSCSSITDVSLK---YLAEGCRKLKYLNLS----WCPQISGNGVQALQRGCKELEKLSLKGCL-------ELELEALLKA 263 (483)
T ss_pred cccchhHHHHHH---HHHHhhhhHHHhhhc----cCchhhcCcchHHhccchhhhhhhhcccc-------cccHHHHHHH
Confidence 998877765444 355578899999999 5888999999999999999999988 777 8999999999
Q ss_pred HhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhcc
Q 044164 248 ASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSK 327 (714)
Q Consensus 248 ~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~ 327 (714)
+..|+-+..+++.+| ..+||.++..+..+|..|+.|+.++|..+++.. +.++.++
T Consensus 264 ~~~~~~i~~lnl~~c-----------------------~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~--l~aLg~~ 318 (483)
T KOG4341|consen 264 AAYCLEILKLNLQHC-----------------------NQLTDEDLWLIACGCHALQVLCYSSCTDITDEV--LWALGQH 318 (483)
T ss_pred hccChHhhccchhhh-----------------------ccccchHHHHHhhhhhHhhhhcccCCCCCchHH--HHHHhcC
Confidence 989998999988888 456788888888899999999999999887764 7788899
Q ss_pred CCCccEEEeccccCccccCCCcchHHHh-cCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHH
Q 044164 328 CPRLKSLKLGQVHGICREIDSSMPAAGV-ALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIF 406 (714)
Q Consensus 328 ~~~L~~L~L~~~~~~c~~i~~~~~l~~l-~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l 406 (714)
+++|+.|.+..| ...++.+ +..+ .+|+.|+.+++..|..++|..+.+++.+||.|+.|.++.|..+||+|+..+
T Consensus 319 ~~~L~~l~l~~c----~~fsd~~-ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l 393 (483)
T KOG4341|consen 319 CHNLQVLELSGC----QQFSDRG-FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL 393 (483)
T ss_pred CCceEEEecccc----chhhhhh-hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence 999999999994 4455543 3344 488999999999999899999999999999999999999999999998887
Q ss_pred HHHc--CCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEE-ecccccccccchh
Q 044164 407 ARVL--EKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHV-DCVWESVEQYSQD 459 (714)
Q Consensus 407 ~~~~--~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l-~C~~~~~~~~~~l 459 (714)
...- ...|+.+.+++|+.+ ++..+..+. .|++|+++++ +|..++.+....+
T Consensus 394 ~~~~c~~~~l~~lEL~n~p~i-~d~~Le~l~-~c~~Leri~l~~~q~vtk~~i~~~ 447 (483)
T KOG4341|consen 394 SSSSCSLEGLEVLELDNCPLI-TDATLEHLS-ICRNLERIELIDCQDVTKEAISRF 447 (483)
T ss_pred hhccccccccceeeecCCCCc-hHHHHHHHh-hCcccceeeeechhhhhhhhhHHH
Confidence 6511 268999999999988 666666665 5789999999 8998776655443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.89 E-value=4.5e-23 Score=251.97 Aligned_cols=127 Identities=17% Similarity=0.196 Sum_probs=84.9
Q ss_pred cccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccc
Q 044164 515 WTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFAL 594 (714)
Q Consensus 515 ~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~ 594 (714)
+++|+.|.+. .....+.++. ....++|+.|+++ ++-..+..|. .+.++++|+.++|+.|.+.|.+
T Consensus 451 l~~L~~L~L~--~n~~~~~~p~--~~~~~~L~~L~ls--~n~l~~~~~~--------~~~~l~~L~~L~Ls~N~l~~~~- 515 (968)
T PLN00113 451 MPSLQMLSLA--RNKFFGGLPD--SFGSKRLENLDLS--RNQFSGAVPR--------KLGSLSELMQLKLSENKLSGEI- 515 (968)
T ss_pred CCCCcEEECc--CceeeeecCc--ccccccceEEECc--CCccCCccCh--------hhhhhhccCEEECcCCcceeeC-
Confidence 4556665552 2222233332 1234666666664 3323333343 5566777777777777777765
Q ss_pred cCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeec-----cchhHHHHHHHh
Q 044164 595 TAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIH-----GTANEHFMSFFL 669 (714)
Q Consensus 595 ~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~~~~~ 669 (714)
|..+..|+.++.+++.+ |++++.+|+. ++++++|++|+++ |.+|+.+..+
T Consensus 516 --p~~~~~l~~L~~L~Ls~-------------------N~l~~~~p~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l-- 570 (968)
T PLN00113 516 --PDELSSCKKLVSLDLSH-------------------NQLSGQIPAS--FSEMPVLSQLDLSQNQLSGEIPKNLGNV-- 570 (968)
T ss_pred --ChHHcCccCCCEEECCC-------------------CcccccCChh--HhCcccCCEEECCCCcccccCChhHhcC--
Confidence 66666676666666666 8999999988 8899999999998 8899888877
Q ss_pred cCCCcccccccccc
Q 044164 670 KIPTLRDVQLREDY 683 (714)
Q Consensus 670 ~~~~l~~~~~~~~~ 683 (714)
++|+.+.++...
T Consensus 571 --~~L~~l~ls~N~ 582 (968)
T PLN00113 571 --ESLVQVNISHNH 582 (968)
T ss_pred --cccCEEeccCCc
Confidence 788888887653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=4.5e-22 Score=243.21 Aligned_cols=486 Identities=15% Similarity=0.067 Sum_probs=267.2
Q ss_pred cccCcceeeeccccCCCCCCccccCCCchhHHHHHhhhCCCeeEEEEeecChhhHHHHcccCCCCCEEEEecccccCCCC
Q 044164 69 VCFQAINNLDLSCLSPWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYARSPLTLHFLAPEWPKLSHVKLVRWHQRFNAP 148 (714)
Q Consensus 69 ~~f~~L~~L~Ls~~~~~~~~~l~~~~~~~l~~~~L~~~~p~L~~L~l~~~~~~~l~~l~~~~p~L~~L~L~~~~~~~~~~ 148 (714)
..+++|+.|+++...- ...++..+...+.+|+.|++++........ ...+++|++|++.++....
T Consensus 90 ~~l~~L~~L~Ls~n~~-----------~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~~~--- 154 (968)
T PLN00113 90 FRLPYIQTINLSNNQL-----------SGPIPDDIFTTSSSLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLSG--- 154 (968)
T ss_pred hCCCCCCEEECCCCcc-----------CCcCChHHhccCCCCCEEECcCCccccccC-ccccCCCCEEECcCCcccc---
Confidence 4678899999975320 001122232466778888876543321100 1346778888887664221
Q ss_pred ChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-
Q 044164 149 IGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA- 227 (714)
Q Consensus 149 ~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L- 227 (714)
.+...++++++|++|+|+++. ..+.++..+..++ +|++|++++|.. ...++.....+++|+.|++
T Consensus 155 ---~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~----~L~~L~L~~n~l------~~~~p~~l~~l~~L~~L~L~ 220 (968)
T PLN00113 155 ---EIPNDIGSFSSLKVLDLGGNV-LVGKIPNSLTNLT----SLEFLTLASNQL------VGQIPRELGQMKSLKWIYLG 220 (968)
T ss_pred ---cCChHHhcCCCCCEEECccCc-ccccCChhhhhCc----CCCeeeccCCCC------cCcCChHHcCcCCccEEECc
Confidence 122345667788888887775 3344455555555 788888876432 1122333456677777777
Q ss_pred eeecccccccccCHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCC-CCCCCCCccCCCcCHHHHHHHHhcCCcccce
Q 044164 228 TCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPN-NNDEGYASEDARISPTALGDFFESLPLLEEL 306 (714)
Q Consensus 228 ~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~-~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L 306 (714)
.+. ++......+ .++++|++|++.+|. +++..-..+.. ..++.+....+.++.. +...+..+++|++|
T Consensus 221 ~n~--------l~~~~p~~l-~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L 289 (968)
T PLN00113 221 YNN--------LSGEIPYEI-GGLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGP-IPPSIFSLQKLISL 289 (968)
T ss_pred CCc--------cCCcCChhH-hcCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCCeeecc-CchhHhhccCcCEE
Confidence 433 222111222 356777777776553 22110000000 1123333333333322 12223456788888
Q ss_pred ecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCC
Q 044164 307 VLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSN 386 (714)
Q Consensus 307 ~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~ 386 (714)
++++|. +... +......+++|+.|++.++ .++... ...+..+++|+.|++++|. ++.. +......+++
T Consensus 290 ~Ls~n~-l~~~---~p~~~~~l~~L~~L~l~~n-----~~~~~~-~~~~~~l~~L~~L~L~~n~-l~~~-~p~~l~~~~~ 357 (968)
T PLN00113 290 DLSDNS-LSGE---IPELVIQLQNLEILHLFSN-----NFTGKI-PVALTSLPRLQVLQLWSNK-FSGE-IPKNLGKHNN 357 (968)
T ss_pred ECcCCe-eccC---CChhHcCCCCCcEEECCCC-----ccCCcC-ChhHhcCCCCCEEECcCCC-CcCc-CChHHhCCCC
Confidence 888774 2222 2233367788888888762 222221 2356677888888888775 3322 2223344677
Q ss_pred ccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccC
Q 044164 387 LTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGES 466 (714)
Q Consensus 387 L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~ 466 (714)
|+.|++++|. ++......+. .. ++|+.|++++|... +. ++.....+++|+.|+++.+..++..+..+.
T Consensus 358 L~~L~Ls~n~-l~~~~p~~~~-~~-~~L~~L~l~~n~l~--~~-~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~------ 425 (968)
T PLN00113 358 LTVLDLSTNN-LTGEIPEGLC-SS-GNLFKLILFSNSLE--GE-IPKSLGACRSLRRVRLQDNSFSGELPSEFT------ 425 (968)
T ss_pred CcEEECCCCe-eEeeCChhHh-Cc-CCCCEEECcCCEec--cc-CCHHHhCCCCCCEEECcCCEeeeECChhHh------
Confidence 8888887776 4332212222 22 67777777776543 11 222223456777777733333333333221
Q ss_pred CCCccccCCccccchhHhhhcChHHHhHh--------hhcccccCCCCCCCccccccccccceeeehhcccccccccccC
Q 044164 467 SSSSHEACGFKDFQTEKRIMMSEEEASLK--------KKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAG 538 (714)
Q Consensus 467 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~ 538 (714)
..+.+..+|+++.......+.... ....|+....... ....++|+.|++ .+..++......
T Consensus 426 -----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~---~~~~~~L~~L~l---s~n~l~~~~~~~ 494 (968)
T PLN00113 426 -----KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPD---SFGSKRLENLDL---SRNQFSGAVPRK 494 (968)
T ss_pred -----cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCc---ccccccceEEEC---cCCccCCccChh
Confidence 112222222222111100000000 0000111100000 012467888887 333343333445
Q ss_pred CCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhccccccc
Q 044164 539 LENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLN 618 (714)
Q Consensus 539 l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~ 618 (714)
+.++++|++|+++ +|-..+..|. .+..+++|+.++|+.|.++|.+ |..+.+|+.++.++|.+
T Consensus 495 ~~~l~~L~~L~Ls--~N~l~~~~p~--------~~~~l~~L~~L~Ls~N~l~~~~---p~~~~~l~~L~~L~Ls~----- 556 (968)
T PLN00113 495 LGSLSELMQLKLS--ENKLSGEIPD--------ELSSCKKLVSLDLSHNQLSGQI---PASFSEMPVLSQLDLSQ----- 556 (968)
T ss_pred hhhhhccCEEECc--CCcceeeCCh--------HHcCccCCCEEECCCCcccccC---ChhHhCcccCCEEECCC-----
Confidence 8889999999996 4444445555 6788999999999999999987 88888999999999988
Q ss_pred cccCCCCCCCCccccccccCcchhhhHHHhhhhhheeec-----cchhHH
Q 044164 619 LKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIH-----GTANEH 663 (714)
Q Consensus 619 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~ 663 (714)
|++++.+|+. ++++++|++|+|+ |.+|+.
T Consensus 557 --------------N~l~~~~p~~--l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 557 --------------NQLSGEIPKN--LGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred --------------CcccccCChh--HhcCcccCEEeccCCcceeeCCCc
Confidence 9999999998 8999999999998 667753
No 4
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=1.3e-21 Score=191.88 Aligned_cols=254 Identities=20% Similarity=0.295 Sum_probs=157.4
Q ss_pred cccCCCCCCcCCCcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhHhccccEEEEecccccccccccccCcceeeeccccC
Q 044164 4 TTVSKVPNFHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERSTRKSLALRGNIRDLNQVPVCFQAINNLDLSCLS 83 (714)
Q Consensus 4 ~~i~~~~~~~~~LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~~~~~~~L~l~~~~~~l~~l~~~f~~L~~L~Ls~~~ 83 (714)
.+++..-+|+. |||||+..||+.| ..+++.+++.|||||+++....+.+..++...+
T Consensus 90 ~~~npgv~~~s-lpDEill~IFs~L-~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r--------------------- 146 (419)
T KOG2120|consen 90 RENNPGVSWDS-LPDEILLGIFSCL-CKKELLKVSGVCKRFYRLASDESLWQTLDLTGR--------------------- 146 (419)
T ss_pred cccCCCCCccc-CCHHHHHHHHHhc-cHHHHHHHHHHHHHHhhccccccceeeeccCCC---------------------
Confidence 34454556788 9999999999999 899999999999999998765544433321110
Q ss_pred CCCCCccccCCCchhHHHHHhhhCCCeeEEEEee--cChhhH-HHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcC
Q 044164 84 PWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYA--RSPLTL-HFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHC 160 (714)
Q Consensus 84 ~~~~~~l~~~~~~~l~~~~L~~~~p~L~~L~l~~--~~~~~l-~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~ 160 (714)
+.. ++.....+ ++ .+..+.+-. .....+ +.+...-..|++|++++... +...+..+++.|
T Consensus 147 ----~i~-----p~~l~~l~-~r--gV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~i-----t~stl~~iLs~C 209 (419)
T KOG2120|consen 147 ----NIH-----PDVLGRLL-SR--GVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVI-----TVSTLHGILSQC 209 (419)
T ss_pred ----ccC-----hhHHHHHH-hC--CeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhhe-----eHHHHHHHHHHH
Confidence 000 11111111 11 122222210 111111 11111223477777775421 356777889999
Q ss_pred CCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeeccccccccc
Q 044164 161 PSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLGFV 239 (714)
Q Consensus 161 ~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i 239 (714)
.+|+.|.|.|.. .++.+...++.-. +|+.|+|+. |.||+..++..+..+|..|..|++ -|. ..
T Consensus 210 ~kLk~lSlEg~~-LdD~I~~~iAkN~----~L~~lnlsm----~sG~t~n~~~ll~~scs~L~~LNlsWc~-------l~ 273 (419)
T KOG2120|consen 210 SKLKNLSLEGLR-LDDPIVNTIAKNS----NLVRLNLSM----CSGFTENALQLLLSSCSRLDELNLSWCF-------LF 273 (419)
T ss_pred Hhhhhccccccc-cCcHHHHHHhccc----cceeecccc----ccccchhHHHHHHHhhhhHhhcCchHhh-------cc
Confidence 999999999988 6777777666655 999999995 889999999999999999999999 543 34
Q ss_pred CHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChH
Q 044164 240 GDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWP 319 (714)
Q Consensus 240 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~ 319 (714)
++..-..+++--++|+.|+++||.+ .+.+..+..+...||+|.+|++++|..+++.
T Consensus 274 ~~~Vtv~V~hise~l~~LNlsG~rr----------------------nl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~-- 329 (419)
T KOG2120|consen 274 TEKVTVAVAHISETLTQLNLSGYRR----------------------NLQKSHLSTLVRRCPNLVHLDLSDSVMLKND-- 329 (419)
T ss_pred chhhhHHHhhhchhhhhhhhhhhHh----------------------hhhhhHHHHHHHhCCceeeeccccccccCch--
Confidence 4432223333446788888887742 1223345555666777777777766655442
Q ss_pred HHHHHhccCCCccEEEecc
Q 044164 320 ALELLNSKCPRLKSLKLGQ 338 (714)
Q Consensus 320 ~l~~l~~~~~~L~~L~L~~ 338 (714)
......+++.|++|.++.
T Consensus 330 -~~~~~~kf~~L~~lSlsR 347 (419)
T KOG2120|consen 330 -CFQEFFKFNYLQHLSLSR 347 (419)
T ss_pred -HHHHHHhcchheeeehhh
Confidence 222234455555555555
No 5
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.86 E-value=9.6e-23 Score=208.56 Aligned_cols=259 Identities=22% Similarity=0.335 Sum_probs=215.8
Q ss_pred HHHHHhcCC-CCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eee
Q 044164 153 FFALFEHCP-SLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCV 230 (714)
Q Consensus 153 l~~~~~~~~-~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~ 230 (714)
+..++..|. .|++|.++|+...... .+..+...|+++++|++.+ |..+++..+..+...|++|++|++ .|.
T Consensus 129 V~~~~~Rcgg~lk~LSlrG~r~v~~s---slrt~~~~CpnIehL~l~g----c~~iTd~s~~sla~~C~~l~~l~L~~c~ 201 (483)
T KOG4341|consen 129 VENMISRCGGFLKELSLRGCRAVGDS---SLRTFASNCPNIEHLALYG----CKKITDSSLLSLARYCRKLRHLNLHSCS 201 (483)
T ss_pred eehHhhhhccccccccccccccCCcc---hhhHHhhhCCchhhhhhhc----ceeccHHHHHHHHHhcchhhhhhhcccc
Confidence 334455553 5899999988644332 3445666788999998886 667999999999999999999999 887
Q ss_pred cccccccccCHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceeccc
Q 044164 231 FDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDV 310 (714)
Q Consensus 231 ~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~ 310 (714)
.+++..++.++..|++|++|+++.|+ .|+..+++.+..+|.+++.+...+
T Consensus 202 -------~iT~~~Lk~la~gC~kL~~lNlSwc~-----------------------qi~~~gv~~~~rG~~~l~~~~~kG 251 (483)
T KOG4341|consen 202 -------SITDVSLKYLAEGCRKLKYLNLSWCP-----------------------QISGNGVQALQRGCKELEKLSLKG 251 (483)
T ss_pred -------hhHHHHHHHHHHhhhhHHHhhhccCc-----------------------hhhcCcchHHhccchhhhhhhhcc
Confidence 89999999999999999999999884 345567888888999999998889
Q ss_pred ccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEE
Q 044164 311 GNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKF 390 (714)
Q Consensus 311 c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L 390 (714)
|...++.. +..+...++-+.++++.. |+.++|......-..|..|+.|+.++|.+++|..+.++..+|++|+.|
T Consensus 252 C~e~~le~--l~~~~~~~~~i~~lnl~~----c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l 325 (483)
T KOG4341|consen 252 CLELELEA--LLKAAAYCLEILKLNLQH----CNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVL 325 (483)
T ss_pred cccccHHH--HHHHhccChHhhccchhh----hccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEE
Confidence 98776653 667778888888888877 778888753333357899999999999999999999999999999999
Q ss_pred EEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEE-eccccccccc
Q 044164 391 EVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHV-DCVWESVEQY 456 (714)
Q Consensus 391 ~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l-~C~~~~~~~~ 456 (714)
.+.+|..+++.++..+..+| +.|+.+++..|..+ ++..+..++..|+.|+.|.+ .|-.++.++.
T Consensus 326 ~l~~c~~fsd~~ft~l~rn~-~~Le~l~~e~~~~~-~d~tL~sls~~C~~lr~lslshce~itD~gi 390 (483)
T KOG4341|consen 326 ELSGCQQFSDRGFTMLGRNC-PHLERLDLEECGLI-TDGTLASLSRNCPRLRVLSLSHCELITDEGI 390 (483)
T ss_pred eccccchhhhhhhhhhhcCC-hhhhhhccccccee-hhhhHhhhccCCchhccCChhhhhhhhhhhh
Confidence 99999999999999999999 99999999999988 56678899999999999999 5877665533
No 6
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.49 E-value=5.1e-14 Score=158.68 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=27.0
Q ss_pred CcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhHhcc
Q 044164 16 LPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERST 51 (714)
Q Consensus 16 LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~~~~ 51 (714)
.|++....++... ...+......++++|.......
T Consensus 48 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 82 (482)
T KOG1947|consen 48 LPDELLADLLLKL-VVLDRESVSLVTRLWLTLLGSL 82 (482)
T ss_pred cccchhhhccccc-ccccccccchhhhhhhhhhhhh
Confidence 7777888888887 6777888889999998865443
No 7
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.48 E-value=6e-14 Score=158.06 Aligned_cols=158 Identities=24% Similarity=0.373 Sum_probs=76.5
Q ss_pred cCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhc-CC-cCcceee
Q 044164 288 ISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVA-LW-KGLESLS 365 (714)
Q Consensus 288 it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~-~~-~~L~~L~ 365 (714)
+++.++..+...|++|++|++++|..+++.+ +..++.+|++|+.|.+..+.+ |..+++.. +..+. .. ..+..+.
T Consensus 282 lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~--l~~~~~~c~~l~~l~~~~~~~-c~~l~~~~-l~~~~~~~~d~~~~~~ 357 (482)
T KOG1947|consen 282 LTDEGLVSIAERCPSLRELDLSGCHGLTDSG--LEALLKNCPNLRELKLLSLNG-CPSLTDLS-LSGLLTLTSDDLAELI 357 (482)
T ss_pred cchhHHHHHHHhcCcccEEeeecCccchHHH--HHHHHHhCcchhhhhhhhcCC-CccHHHHH-HHHhhccCchhHhHHH
Confidence 3444555555555555555555555443332 333344455555544443322 22222221 11111 11 1333334
Q ss_pred eecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEE
Q 044164 366 IKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLH 445 (714)
Q Consensus 366 L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~ 445 (714)
+.+|..+++..+...+ .......+.+.+|+.++ .++......+ ..++.|+++.|..+ ++..+......+..++.+.
T Consensus 358 ~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~~~-~~l~~L~l~~~~~~-t~~~l~~~~~~~~~~~~l~ 433 (482)
T KOG1947|consen 358 LRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLCRS-DSLRVLNLSDCRLV-TDKGLRCLADSCSNLKDLD 433 (482)
T ss_pred HhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhccC-CccceEecccCccc-cccchHHHhhhhhccccCC
Confidence 4444444433333332 11111134455666665 5555555554 44888888888877 5666666655467777787
Q ss_pred E-ecccccc
Q 044164 446 V-DCVWESV 453 (714)
Q Consensus 446 l-~C~~~~~ 453 (714)
+ +|..++.
T Consensus 434 ~~~~~~~~~ 442 (482)
T KOG1947|consen 434 LSGCRVITL 442 (482)
T ss_pred ccCcccccc
Confidence 7 6776543
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.47 E-value=3e-12 Score=136.20 Aligned_cols=142 Identities=23% Similarity=0.222 Sum_probs=82.9
Q ss_pred HHHhcCCcccceecccccCcCCChH-HHHHHhccCCCccEEEeccccCccccCCCcc---hHHHhcCCcCcceeeeecCC
Q 044164 295 DFFESLPLLEELVLDVGNNVRDTWP-ALELLNSKCPRLKSLKLGQVHGICREIDSSM---PAAGVALWKGLESLSIKNSA 370 (714)
Q Consensus 295 ~l~~~~p~L~~L~L~~c~~l~~~~~-~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~---~l~~l~~~~~L~~L~L~~c~ 370 (714)
..+..+++|++|++++|. +++.+. .+......+++|++|+++++. +++.+ ....+..+++|++|++++|.
T Consensus 159 ~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-----i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 159 KALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNG-----LTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCc-----cChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 334455667777777653 332211 111122344577777777632 22221 11234567888888888875
Q ss_pred CCCHHHHHHHHhcC----CCccEEEEeCCCCCCHHHHHHHHHHc--CCCeeEEEeeCCCCCCchhHHHHHH---hcC-CC
Q 044164 371 DLTDSALIAISLGC----SNLTKFEVQGCNKITKMGMQIFARVL--EKTLVDVRISSCKYLNTVCSLQALE---PIR-DR 440 (714)
Q Consensus 371 ~ltd~~l~~l~~~~----~~L~~L~L~~c~~lt~~~l~~l~~~~--~~~L~~L~L~~C~~l~~~~~l~~l~---~~~-~~ 440 (714)
+++.++..++..+ ++|++|++.+|. +++.+...+...+ .++|+++++++|..- +.....++ ... +.
T Consensus 233 -l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~--~~~~~~~~~~~~~~~~~ 308 (319)
T cd00116 233 -LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFG--EEGAQLLAESLLEPGNE 308 (319)
T ss_pred -CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCc--HHHHHHHHHHHhhcCCc
Confidence 7777777766654 688888888886 7766666555443 157888888887754 22222222 222 56
Q ss_pred CCEEEE
Q 044164 441 IQRLHV 446 (714)
Q Consensus 441 L~~L~l 446 (714)
|++|+|
T Consensus 309 ~~~~~~ 314 (319)
T cd00116 309 LESLWV 314 (319)
T ss_pred hhhccc
Confidence 777776
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.45 E-value=5.8e-15 Score=157.59 Aligned_cols=372 Identities=18% Similarity=0.180 Sum_probs=229.9
Q ss_pred CCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEeeeeccccccccc
Q 044164 160 CPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFV 239 (714)
Q Consensus 160 ~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~i 239 (714)
+|-.+-.|++++....+..|....+.. +++.|.|.. + .-..++.-+..|.+|++|.+..+ .+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt----~~~WLkLnr-t------~L~~vPeEL~~lqkLEHLs~~HN-------~L 67 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMT----QMTWLKLNR-T------KLEQVPEELSRLQKLEHLSMAHN-------QL 67 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhh----heeEEEech-h------hhhhChHHHHHHhhhhhhhhhhh-------hh
Confidence 345566777888765566666666655 888888875 1 12344555667888888888332 11
Q ss_pred CHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChH
Q 044164 240 GDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWP 319 (714)
Q Consensus 240 ~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~ 319 (714)
. .+..-...+|.|+.+.+.+. ++ ...|++.-+-.+..|+.|+++... ++..
T Consensus 68 ~--~vhGELs~Lp~LRsv~~R~N-~L-----------------------KnsGiP~diF~l~dLt~lDLShNq-L~Ev-- 118 (1255)
T KOG0444|consen 68 I--SVHGELSDLPRLRSVIVRDN-NL-----------------------KNSGIPTDIFRLKDLTILDLSHNQ-LREV-- 118 (1255)
T ss_pred H--hhhhhhccchhhHHHhhhcc-cc-----------------------ccCCCCchhcccccceeeecchhh-hhhc--
Confidence 0 11111234566666666532 22 112222222355678888888753 3222
Q ss_pred HHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCC
Q 044164 320 ALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKIT 399 (714)
Q Consensus 320 ~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt 399 (714)
+.. +...+++-.|+|++ ++|... |-..+.++..|-.|+++++. + +.++.-...+..|++|.+++++ +.
T Consensus 119 -P~~-LE~AKn~iVLNLS~-----N~IetI-Pn~lfinLtDLLfLDLS~Nr-L--e~LPPQ~RRL~~LqtL~Ls~NP-L~ 186 (1255)
T KOG0444|consen 119 -PTN-LEYAKNSIVLNLSY-----NNIETI-PNSLFINLTDLLFLDLSNNR-L--EMLPPQIRRLSMLQTLKLSNNP-LN 186 (1255)
T ss_pred -chh-hhhhcCcEEEEccc-----CccccC-CchHHHhhHhHhhhccccch-h--hhcCHHHHHHhhhhhhhcCCCh-hh
Confidence 112 24556778888877 444332 23345567777888888765 2 2333333446778888888888 44
Q ss_pred HHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccccCCcccc
Q 044164 400 KMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDF 479 (714)
Q Consensus 400 ~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 479 (714)
-..+..+... ++|+.|.+++-... -+.....+ ..+.+|..++++|+.... .|+-+
T Consensus 187 hfQLrQLPsm--tsL~vLhms~TqRT-l~N~Ptsl-d~l~NL~dvDlS~N~Lp~-vPecl-------------------- 241 (1255)
T KOG0444|consen 187 HFQLRQLPSM--TSLSVLHMSNTQRT-LDNIPTSL-DDLHNLRDVDLSENNLPI-VPECL-------------------- 241 (1255)
T ss_pred HHHHhcCccc--hhhhhhhcccccch-hhcCCCch-hhhhhhhhccccccCCCc-chHHH--------------------
Confidence 4444444433 56677777665432 11111111 223456677777766422 22222
Q ss_pred chhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCC
Q 044164 480 QTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQ 559 (714)
Q Consensus 480 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~ 559 (714)
..+.+|+.|.| +++.++.+. ++.+.--+|+.|.++ .|...
T Consensus 242 ---------------------------------y~l~~LrrLNL---S~N~iteL~-~~~~~W~~lEtLNlS--rNQLt- 281 (1255)
T KOG0444|consen 242 ---------------------------------YKLRNLRRLNL---SGNKITELN-MTEGEWENLETLNLS--RNQLT- 281 (1255)
T ss_pred ---------------------------------hhhhhhheecc---CcCceeeee-ccHHHHhhhhhhccc--cchhc-
Confidence 34567777777 555555553 345556688888886 33333
Q ss_pred CCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCc
Q 044164 560 QKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSL 639 (714)
Q Consensus 560 ~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~ 639 (714)
..|. .+.++|+|+|+-.+.|.++=--+ |+|.|.|-++|.|.... |.+++ +
T Consensus 282 ~LP~--------avcKL~kL~kLy~n~NkL~FeGi--PSGIGKL~~Levf~aan-------------------N~LEl-V 331 (1255)
T KOG0444|consen 282 VLPD--------AVCKLTKLTKLYANNNKLTFEGI--PSGIGKLIQLEVFHAAN-------------------NKLEL-V 331 (1255)
T ss_pred cchH--------HHhhhHHHHHHHhccCcccccCC--ccchhhhhhhHHHHhhc-------------------ccccc-C
Confidence 2466 78899999999999998664333 99999999999999988 77764 6
Q ss_pred chhhhHHHhhhhhheeec----cchhHHHHHHHhcCCCcccccccccc---CCCCCCCC
Q 044164 640 PAAGLLSQCRSLRKLFIH----GTANEHFMSFFLKIPTLRDVQLREDY---YPAPENDT 691 (714)
Q Consensus 640 ~~~~~~~~~~~l~~l~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~ 691 (714)
|+. +..|..|+||.+. =|+|+.|--+ +.|..+.||+.- .|.-.||.
T Consensus 332 PEg--lcRC~kL~kL~L~~NrLiTLPeaIHlL----~~l~vLDlreNpnLVMPPKP~da 384 (1255)
T KOG0444|consen 332 PEG--LCRCVKLQKLKLDHNRLITLPEAIHLL----PDLKVLDLRENPNLVMPPKPNDA 384 (1255)
T ss_pred chh--hhhhHHHHHhcccccceeechhhhhhc----CCcceeeccCCcCccCCCCcchh
Confidence 777 8999999999998 7999999888 999999999873 34444554
No 10
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.2e-13 Score=136.15 Aligned_cols=205 Identities=19% Similarity=0.215 Sum_probs=156.4
Q ss_pred CCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEeeeecccccccccCHHHHHHHHhhCCCCceEEeccccCcCCCC
Q 044164 190 ASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNS 269 (714)
Q Consensus 190 ~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~ 269 (714)
..|++||+++ +. ++...+..+...|.+|+.|.++.. .+.|.....+|+ ..+|+.|+++.|+
T Consensus 185 sRlq~lDLS~-s~----it~stl~~iLs~C~kLk~lSlEg~-------~LdD~I~~~iAk-N~~L~~lnlsm~s------ 245 (419)
T KOG2120|consen 185 SRLQHLDLSN-SV----ITVSTLHGILSQCSKLKNLSLEGL-------RLDDPIVNTIAK-NSNLVRLNLSMCS------ 245 (419)
T ss_pred hhhHHhhcch-hh----eeHHHHHHHHHHHHhhhhcccccc-------ccCcHHHHHHhc-cccceeecccccc------
Confidence 3799999996 43 888899999999999999999555 688877777874 4789999999984
Q ss_pred CCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCc
Q 044164 270 SRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSS 349 (714)
Q Consensus 270 ~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~ 349 (714)
.+|..++..++..|..|.+|+++||.-.++.. -..+..--++|+.|+|++|.. .+.+.
T Consensus 246 -----------------G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~V--tv~V~hise~l~~LNlsG~rr---nl~~s 303 (419)
T KOG2120|consen 246 -----------------GFTENALQLLLSSCSRLDELNLSWCFLFTEKV--TVAVAHISETLTQLNLSGYRR---NLQKS 303 (419)
T ss_pred -----------------ccchhHHHHHHHhhhhHhhcCchHhhccchhh--hHHHhhhchhhhhhhhhhhHh---hhhhh
Confidence 45667888999999999999999998544331 123334457899999998642 12221
Q ss_pred chHH-HhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCch
Q 044164 350 MPAA-GVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTV 428 (714)
Q Consensus 350 ~~l~-~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~ 428 (714)
. +. ..+.||+|.+|++++|..+++..+..+.+ ++.|++|.++.|..|..+.+..+-.. |+|.+|++.+|-. +
T Consensus 304 h-~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k-f~~L~~lSlsRCY~i~p~~~~~l~s~--psl~yLdv~g~vs---d 376 (419)
T KOG2120|consen 304 H-LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK-FNYLQHLSLSRCYDIIPETLLELNSK--PSLVYLDVFGCVS---D 376 (419)
T ss_pred H-HHHHHHhCCceeeeccccccccCchHHHHHHh-cchheeeehhhhcCCChHHeeeeccC--cceEEEEeccccC---c
Confidence 1 22 34689999999999999999976666655 89999999999998887766666554 9999999999863 4
Q ss_pred hHHHHHHhcCCCCC
Q 044164 429 CSLQALEPIRDRIQ 442 (714)
Q Consensus 429 ~~l~~l~~~~~~L~ 442 (714)
..++.+...+|+|+
T Consensus 377 t~mel~~e~~~~lk 390 (419)
T KOG2120|consen 377 TTMELLKEMLSHLK 390 (419)
T ss_pred hHHHHHHHhCcccc
Confidence 45666666665544
No 11
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.43 E-value=9.1e-12 Score=132.52 Aligned_cols=271 Identities=18% Similarity=0.126 Sum_probs=176.3
Q ss_pred hhCCCeeEEEEeecCh-----hhHHHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChH
Q 044164 105 HAFPSVVSLTIYARSP-----LTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLP 179 (714)
Q Consensus 105 ~~~p~L~~L~l~~~~~-----~~l~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~ 179 (714)
..+.+++.|.+.+... ..+.......+++++|.+.+......-.....+...+..+++|++|+++++... ...+
T Consensus 20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~ 98 (319)
T cd00116 20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG-PDGC 98 (319)
T ss_pred HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC-hhHH
Confidence 4556789999886543 234434456788999998876422100001223345666889999999998754 3445
Q ss_pred HHHHhchhccCCCcEEEeccCccccCCCCHHHHHH---HHhhC-CCCcEEEe-eeecccccccccCHHH---HHHHHhhC
Q 044164 180 TAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLS---ITSAC-PNLSQLLA-TCVFDHRFLGFVGDET---LLSIASNC 251 (714)
Q Consensus 180 ~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~---l~~~~-~~L~~L~L-~c~~~~~~~~~i~~~~---l~~l~~~~ 251 (714)
..+..+... ++|++|++++|. +++.++.. ....+ ++|+.|++ +|. +++.. +......+
T Consensus 99 ~~~~~l~~~-~~L~~L~ls~~~-----~~~~~~~~l~~~l~~~~~~L~~L~L~~n~--------l~~~~~~~~~~~~~~~ 164 (319)
T cd00116 99 GVLESLLRS-SSLQELKLNNNG-----LGDRGLRLLAKGLKDLPPALEKLVLGRNR--------LEGASCEALAKALRAN 164 (319)
T ss_pred HHHHHHhcc-CcccEEEeeCCc-----cchHHHHHHHHHHHhCCCCceEEEcCCCc--------CCchHHHHHHHHHHhC
Confidence 555555533 569999999742 44444443 33455 89999999 655 44333 33334567
Q ss_pred CCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHH---hcCCcccceecccccCcCCChH-HHHHHhcc
Q 044164 252 PRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFF---ESLPLLEELVLDVGNNVRDTWP-ALELLNSK 327 (714)
Q Consensus 252 ~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~---~~~p~L~~L~L~~c~~l~~~~~-~l~~l~~~ 327 (714)
++|++|++.+|. +++.++..+. ..+++|++|++++|. +++.+. .+......
T Consensus 165 ~~L~~L~l~~n~------------------------l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~~~ 219 (319)
T cd00116 165 RDLKELNLANNG------------------------IGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETLAS 219 (319)
T ss_pred CCcCEEECcCCC------------------------CchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHhcc
Confidence 789999998752 3444444443 445699999999984 433321 23344567
Q ss_pred CCCccEEEeccccCccccCCCcchHHHh-c----CCcCcceeeeecCCCCCHHHHHHHHhc---CCCccEEEEeCCCCCC
Q 044164 328 CPRLKSLKLGQVHGICREIDSSMPAAGV-A----LWKGLESLSIKNSADLTDSALIAISLG---CSNLTKFEVQGCNKIT 399 (714)
Q Consensus 328 ~~~L~~L~L~~~~~~c~~i~~~~~l~~l-~----~~~~L~~L~L~~c~~ltd~~l~~l~~~---~~~L~~L~L~~c~~lt 399 (714)
+++|++|+++++ .+++.+ ...+ . ..+.|++|++.+|. +++.+...+... +++|+.|++++|. ++
T Consensus 220 ~~~L~~L~ls~n-----~l~~~~-~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~-l~ 291 (319)
T cd00116 220 LKSLEVLNLGDN-----NLTDAG-AAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK-FG 291 (319)
T ss_pred cCCCCEEecCCC-----cCchHH-HHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC-Cc
Confidence 899999999983 344432 2222 2 24799999999986 777666555433 5789999999998 89
Q ss_pred HHHHHHHHHHc--C-CCeeEEEeeCCC
Q 044164 400 KMGMQIFARVL--E-KTLVDVRISSCK 423 (714)
Q Consensus 400 ~~~l~~l~~~~--~-~~L~~L~L~~C~ 423 (714)
+++...+++.. + +.|++|++.+.+
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 292 EEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 88877776533 2 589999987654
No 12
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.41 E-value=1.8e-14 Score=153.28 Aligned_cols=60 Identities=12% Similarity=0.338 Sum_probs=36.6
Q ss_pred CCCCCCcceEEEEEeccc-cCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhcc
Q 044164 539 LENCPILEEIQIKVVGDC-RNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 539 l~~~~~L~~L~i~~~~~~-~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~ 613 (714)
+..+|+|+.|.+. ||. +..++- .+.+++.|+.++|..|++-..- |.-|..+ .+++|-++.
T Consensus 388 f~gl~~LrkL~l~--gNqlk~I~kr---------Afsgl~~LE~LdL~~NaiaSIq---~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 388 FNGLPSLRKLRLT--GNQLKSIPKR---------AFSGLEALEHLDLGDNAIASIQ---PNAFEPM-ELKELVMNS 448 (873)
T ss_pred hccchhhhheeec--Cceeeecchh---------hhccCcccceecCCCCcceeec---ccccccc-hhhhhhhcc
Confidence 4457888888876 333 333332 4677888888888888755444 5555555 455555544
No 13
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.24 E-value=7.5e-11 Score=119.56 Aligned_cols=276 Identities=20% Similarity=0.314 Sum_probs=151.7
Q ss_pred cCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccc--cCCChHHHHHhchh---ccCCCcEEEeccCccc
Q 044164 129 EWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYC--WTEDLPTAFELYPS---IAASLSHLNLLVGHSF 203 (714)
Q Consensus 129 ~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~--~~~~~~~~l~~l~~---~~~~L~~L~L~~n~~~ 203 (714)
....++.+++++...-.. ...++...+.+-++|+..+++++.. ..+.++..+..+.. .|++|++|+||.|++.
T Consensus 28 ~~~s~~~l~lsgnt~G~E--Aa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTE--AARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred ccCceEEEeccCCchhHH--HHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 344555566554421100 1234445566667777777777642 12334444333322 3678999999988764
Q ss_pred cCCCCHHHHHHHHhhCCCCcEEEe-eeecccccccccCHHHHHHH-----HhhCCCCceEEeccccCcCCCCCCCCCCCC
Q 044164 204 TEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLGFVGDETLLSI-----ASNCPRLSLLHLADSTALSSNSSRADPNNN 277 (714)
Q Consensus 204 c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~~l~~l-----~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~ 277 (714)
-.+ ..++..++.+|..|++|.+ +|-..+.+-..++. .+..+ +..-++|+.+...+. .+.+.
T Consensus 106 ~~g--~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~-al~~l~~~kk~~~~~~Lrv~i~~rN-rlen~--------- 172 (382)
T KOG1909|consen 106 PKG--IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR-ALFELAVNKKAASKPKLRVFICGRN-RLENG--------- 172 (382)
T ss_pred ccc--hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH-HHHHHHHHhccCCCcceEEEEeecc-ccccc---------
Confidence 444 3467778888999999999 66522211111111 11111 112345666665421 22111
Q ss_pred CCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChH-HHHHHhccCCCccEEEeccccCccccCCCcch---HH
Q 044164 278 DEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWP-ALELLNSKCPRLKSLKLGQVHGICREIDSSMP---AA 353 (714)
Q Consensus 278 l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~-~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~---l~ 353 (714)
+...+...++.+|.|+.+.+... .+...+. .+..-+.+||+|+.|+|.. +..+..+. .+
T Consensus 173 -----------ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal~~~~~LevLdl~D-----Ntft~egs~~Lak 235 (382)
T KOG1909|consen 173 -----------GATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEALEHCPHLEVLDLRD-----NTFTLEGSVALAK 235 (382)
T ss_pred -----------cHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHHHhCCcceeeeccc-----chhhhHHHHHHHH
Confidence 22344555666777888777764 3333332 3444557778888888866 33332221 12
Q ss_pred HhcCCcCcceeeeecCCCCCHHHHHHHH----hcCCCccEEEEeCCCCCCHHHHHHHHHHc--CCCeeEEEeeCCCCCCc
Q 044164 354 GVALWKGLESLSIKNSADLTDSALIAIS----LGCSNLTKFEVQGCNKITKMGMQIFARVL--EKTLVDVRISSCKYLNT 427 (714)
Q Consensus 354 ~l~~~~~L~~L~L~~c~~ltd~~l~~l~----~~~~~L~~L~L~~c~~lt~~~l~~l~~~~--~~~L~~L~L~~C~~l~~ 427 (714)
.+..+++|+.|++.+|. +.+.|..++. ...|+|+.|++.+|. ||..+...++... .|.|+.|+|++|..-..
T Consensus 236 aL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNe-It~da~~~la~~~~ek~dL~kLnLngN~l~e~ 313 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNE-ITRDAALALAACMAEKPDLEKLNLNGNRLGEK 313 (382)
T ss_pred Hhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcch-hHHHHHHHHHHHHhcchhhHHhcCCccccccc
Confidence 34466778888888876 5555544433 445778888887777 6766655544321 26777777777776434
Q ss_pred hhHHHHHHhcC
Q 044164 428 VCSLQALEPIR 438 (714)
Q Consensus 428 ~~~l~~l~~~~ 438 (714)
+..+..++...
T Consensus 314 de~i~ei~~~~ 324 (382)
T KOG1909|consen 314 DEGIDEIASKF 324 (382)
T ss_pred chhHHHHHHhc
Confidence 45555555544
No 14
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.23 E-value=2.4e-12 Score=137.28 Aligned_cols=343 Identities=16% Similarity=0.153 Sum_probs=195.4
Q ss_pred CCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEeeeecccccccccCHHHHHHHH---hhCCCCceEEeccccCcCC
Q 044164 191 SLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIA---SNCPRLSLLHLADSTALSS 267 (714)
Q Consensus 191 ~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~i~~~~l~~l~---~~~~~L~~L~L~~c~~l~~ 267 (714)
.-+.|++++|. ...++.. ...++|+|++++++.+ .+..++ ....+|+.|++.+. .+
T Consensus 79 ~t~~LdlsnNk--l~~id~~----~f~nl~nLq~v~l~~N------------~Lt~IP~f~~~sghl~~L~L~~N-~I-- 137 (873)
T KOG4194|consen 79 QTQTLDLSNNK--LSHIDFE----FFYNLPNLQEVNLNKN------------ELTRIPRFGHESGHLEKLDLRHN-LI-- 137 (873)
T ss_pred ceeeeeccccc--cccCcHH----HHhcCCcceeeeeccc------------hhhhcccccccccceeEEeeecc-cc--
Confidence 66789999863 3344433 3357899999999433 222222 22356888888742 12
Q ss_pred CCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCC
Q 044164 268 NSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREID 347 (714)
Q Consensus 268 ~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~ 347 (714)
..++.+.+. ..|.|++|+++... ++.- ...-...-+++++|+|.+ +.|+
T Consensus 138 ------------------~sv~se~L~----~l~alrslDLSrN~-is~i---~~~sfp~~~ni~~L~La~-----N~It 186 (873)
T KOG4194|consen 138 ------------------SSVTSEELS----ALPALRSLDLSRNL-ISEI---PKPSFPAKVNIKKLNLAS-----NRIT 186 (873)
T ss_pred ------------------ccccHHHHH----hHhhhhhhhhhhch-hhcc---cCCCCCCCCCceEEeecc-----cccc
Confidence 223444443 35788999998643 2111 000112335688888887 5566
Q ss_pred CcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCc
Q 044164 348 SSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNT 427 (714)
Q Consensus 348 ~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~ 427 (714)
+.. ...+..+.+|..|.++.+. |+.-....+ +.+|+|+.|++..+. |.-..... ++.+ ++|+.|.+..+..-.-
T Consensus 187 ~l~-~~~F~~lnsL~tlkLsrNr-ittLp~r~F-k~L~~L~~LdLnrN~-irive~lt-FqgL-~Sl~nlklqrN~I~kL 260 (873)
T KOG4194|consen 187 TLE-TGHFDSLNSLLTLKLSRNR-ITTLPQRSF-KRLPKLESLDLNRNR-IRIVEGLT-FQGL-PSLQNLKLQRNDISKL 260 (873)
T ss_pred ccc-cccccccchheeeecccCc-ccccCHHHh-hhcchhhhhhccccc-eeeehhhh-hcCc-hhhhhhhhhhcCcccc
Confidence 532 3356666788888888765 555444333 347888888887765 32211111 1233 7777777776542210
Q ss_pred hhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCC
Q 044164 428 VCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNG 507 (714)
Q Consensus 428 ~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (714)
+. ...-.+..+++|++.-+.+.......+
T Consensus 261 ~D---G~Fy~l~kme~l~L~~N~l~~vn~g~l------------------------------------------------ 289 (873)
T KOG4194|consen 261 DD---GAFYGLEKMEHLNLETNRLQAVNEGWL------------------------------------------------ 289 (873)
T ss_pred cC---cceeeecccceeecccchhhhhhcccc------------------------------------------------
Confidence 10 111234567777774443221111111
Q ss_pred CCccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccC
Q 044164 508 FSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCG 587 (714)
Q Consensus 508 ~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~ 587 (714)
..+++|+.|.+ +.+.++.+...+...|+.|++|.++ .|-...-.|+ ++..+..|+.+.|+.|
T Consensus 290 -----fgLt~L~~L~l---S~NaI~rih~d~WsftqkL~~LdLs--~N~i~~l~~~--------sf~~L~~Le~LnLs~N 351 (873)
T KOG4194|consen 290 -----FGLTSLEQLDL---SYNAIQRIHIDSWSFTQKLKELDLS--SNRITRLDEG--------SFRVLSQLEELNLSHN 351 (873)
T ss_pred -----cccchhhhhcc---chhhhheeecchhhhcccceeEecc--ccccccCChh--------HHHHHHHhhhhccccc
Confidence 34577777777 3344555555566678888888886 3333322344 6777788888888888
Q ss_pred ccccccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcc-hhhhHHHhhhhhheeeccchhHHH-H
Q 044164 588 DAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLP-AAGLLSQCRSLRKLFIHGTANEHF-M 665 (714)
Q Consensus 588 ~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~~~~~~~~-~ 665 (714)
.+.-.+ ---|.-|++++.|+|.. |.+|..+- +++...++++||||.++|.-=..+ -
T Consensus 352 si~~l~---e~af~~lssL~~LdLr~-------------------N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~k 409 (873)
T KOG4194|consen 352 SIDHLA---EGAFVGLSSLHKLDLRS-------------------NELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPK 409 (873)
T ss_pred chHHHH---hhHHHHhhhhhhhcCcC-------------------CeEEEEEecchhhhccchhhhheeecCceeeecch
Confidence 765433 11122366677777766 88888554 455677899999999997521111 1
Q ss_pred HHHhcCCCccccccccc
Q 044164 666 SFFLKIPTLRDVQLRED 682 (714)
Q Consensus 666 ~~~~~~~~l~~~~~~~~ 682 (714)
.-|-+.++|+.+.|-..
T Consensus 410 rAfsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 410 RAFSGLEALEHLDLGDN 426 (873)
T ss_pred hhhccCcccceecCCCC
Confidence 12223388888877643
No 15
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.22 E-value=1.9e-11 Score=150.80 Aligned_cols=82 Identities=15% Similarity=0.177 Sum_probs=42.5
Q ss_pred cCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHH
Q 044164 299 SLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALI 378 (714)
Q Consensus 299 ~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~ 378 (714)
.+++|+.|++++|..+..- .....++++|+.|++.+| ..++..+ ..+ .+++|+.|++++|..+..
T Consensus 655 ~l~~Le~L~L~~c~~L~~l----p~si~~L~~L~~L~L~~c----~~L~~Lp--~~i-~l~sL~~L~Lsgc~~L~~---- 719 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVEL----PSSIQYLNKLEDLDMSRC----ENLEILP--TGI-NLKSLYRLNLSGCSRLKS---- 719 (1153)
T ss_pred cCCcccEEEecCCCCcccc----chhhhccCCCCEEeCCCC----CCcCccC--CcC-CCCCCCEEeCCCCCCccc----
Confidence 3466777777776654332 122355666777777663 3322221 111 456677777776654321
Q ss_pred HHHhcCCCccEEEEeCCC
Q 044164 379 AISLGCSNLTKFEVQGCN 396 (714)
Q Consensus 379 ~l~~~~~~L~~L~L~~c~ 396 (714)
+....++|+.|++.++.
T Consensus 720 -~p~~~~nL~~L~L~~n~ 736 (1153)
T PLN03210 720 -FPDISTNISWLDLDETA 736 (1153)
T ss_pred -cccccCCcCeeecCCCc
Confidence 11223556666666554
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.16 E-value=1.1e-10 Score=144.08 Aligned_cols=130 Identities=15% Similarity=0.233 Sum_probs=79.9
Q ss_pred CCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHH
Q 044164 300 LPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIA 379 (714)
Q Consensus 300 ~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~ 379 (714)
+++|+.|++++|..+..- ....+++++|+.|+|.+|. .+...+ ..+ .+++|+.|++++|..+..
T Consensus 777 ~~sL~~L~Ls~n~~l~~l----P~si~~L~~L~~L~Ls~C~----~L~~LP--~~~-~L~sL~~L~Ls~c~~L~~----- 840 (1153)
T PLN03210 777 SPSLTRLFLSDIPSLVEL----PSSIQNLHKLEHLEIENCI----NLETLP--TGI-NLESLESLDLSGCSRLRT----- 840 (1153)
T ss_pred cccchheeCCCCCCcccc----ChhhhCCCCCCEEECCCCC----CcCeeC--CCC-CccccCEEECCCCCcccc-----
Confidence 467888888777644332 1223677888888887743 322211 112 567788888888876532
Q ss_pred HHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEE-eccccc
Q 044164 380 ISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHV-DCVWES 452 (714)
Q Consensus 380 l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l-~C~~~~ 452 (714)
+....++|+.|++.++. ++. ++.-...+ ++|+.|++++|+++.. ++.....+++|+.|++ +|..+.
T Consensus 841 ~p~~~~nL~~L~Ls~n~-i~~--iP~si~~l-~~L~~L~L~~C~~L~~---l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 841 FPDISTNISDLNLSRTG-IEE--VPWWIEKF-SNLSFLDMNGCNNLQR---VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred ccccccccCEeECCCCC-Ccc--ChHHHhcC-CCCCEEECCCCCCcCc---cCcccccccCCCeeecCCCcccc
Confidence 22224678888887765 443 23333445 8899999999888732 3333345678888888 787654
No 17
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.07 E-value=1.2e-09 Score=110.88 Aligned_cols=280 Identities=20% Similarity=0.211 Sum_probs=178.7
Q ss_pred HHHHHHhcCCCCceEEecCccccCCC---hHHHHHhchhccCCCcEEEeccCccccCCCC-HH------HHHHHHhhCCC
Q 044164 152 DFFALFEHCPSLSSIDLSHFYCWTED---LPTAFELYPSIAASLSHLNLLVGHSFTEGYK-SH------ELLSITSACPN 221 (714)
Q Consensus 152 ~l~~~~~~~~~L~~L~Ls~~~~~~~~---~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~-~~------~l~~l~~~~~~ 221 (714)
.+........++++|+|+|+++.++. +...+...+ +|+..++++ . ..|-. +. .+...+..||+
T Consensus 21 ~v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~----~L~~v~~sd-~--ftGR~~~Ei~e~L~~l~~aL~~~~~ 93 (382)
T KOG1909|consen 21 DVEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKK----ELREVNLSD-M--FTGRLKDEIPEALKMLSKALLGCPK 93 (382)
T ss_pred hHHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcc----cceeeehHh-h--hcCCcHHHHHHHHHHHHHHHhcCCc
Confidence 44556677899999999999876654 333444444 999999986 2 22211 11 22333456899
Q ss_pred CcEEEe-eeecccccccccCHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcC
Q 044164 222 LSQLLA-TCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESL 300 (714)
Q Consensus 222 L~~L~L-~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~ 300 (714)
|++|+| .+.+.+ -+-..+..+.++|..|++|.+.+|- +...+-..+. ..+.+-........-
T Consensus 94 L~~ldLSDNA~G~-----~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~-----------~al~~l~~~kk~~~~ 156 (382)
T KOG1909|consen 94 LQKLDLSDNAFGP-----KGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLG-----------RALFELAVNKKAASK 156 (382)
T ss_pred eeEeeccccccCc-----cchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHH-----------HHHHHHHHHhccCCC
Confidence 999999 555332 2335778888899999999998872 1100000000 000111111223345
Q ss_pred CcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcch---HHHhcCCcCcceeeeecCCCCCHHHH
Q 044164 301 PLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMP---AAGVALWKGLESLSIKNSADLTDSAL 377 (714)
Q Consensus 301 p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~---l~~l~~~~~L~~L~L~~c~~ltd~~l 377 (714)
++|+++....+.--......+....+.+|.|+.+.+.. +.|...+. ...+..|++|+.|+|+++. ++..+-
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q-----N~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs 230 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ-----NGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGS 230 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEec-----ccccCchhHHHHHHHHhCCcceeeecccch-hhhHHH
Confidence 78999988775433333334666778899999999987 44444331 2356799999999999987 666665
Q ss_pred HHHHhc---CCCccEEEEeCCCCCCHHHHHHHHHHc---CCCeeEEEeeCCCCCCchhH--HHHHHhcCCCCCEEEEecc
Q 044164 378 IAISLG---CSNLTKFEVQGCNKITKMGMQIFARVL---EKTLVDVRISSCKYLNTVCS--LQALEPIRDRIQRLHVDCV 449 (714)
Q Consensus 378 ~~l~~~---~~~L~~L~L~~c~~lt~~~l~~l~~~~---~~~L~~L~L~~C~~l~~~~~--l~~l~~~~~~L~~L~l~C~ 449 (714)
.+++.. .|+|+.|++++|- +.+.|..++...+ .|+|+.|.+.+|... .+.. +..-+...|.|+.|.|+-+
T Consensus 231 ~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt-~da~~~la~~~~ek~dL~kLnLngN 308 (382)
T KOG1909|consen 231 VALAKALSSWPHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEIT-RDAALALAACMAEKPDLEKLNLNGN 308 (382)
T ss_pred HHHHHHhcccchheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhH-HHHHHHHHHHHhcchhhHHhcCCcc
Confidence 666544 5779999999998 8888887776533 489999999998754 2211 2222233689999999544
Q ss_pred cccccccchhhhhhc
Q 044164 450 WESVEQYSQDHEIRG 464 (714)
Q Consensus 450 ~~~~~~~~~l~~~~~ 464 (714)
..+ +..+.+.+++.
T Consensus 309 ~l~-e~de~i~ei~~ 322 (382)
T KOG1909|consen 309 RLG-EKDEGIDEIAS 322 (382)
T ss_pred ccc-ccchhHHHHHH
Confidence 432 55555555553
No 18
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.02 E-value=9.5e-12 Score=133.44 Aligned_cols=273 Identities=16% Similarity=0.137 Sum_probs=137.7
Q ss_pred hCCCeeEEEEeecChhhHHHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhc
Q 044164 106 AFPSVVSLTIYARSPLTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELY 185 (714)
Q Consensus 106 ~~p~L~~L~l~~~~~~~l~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l 185 (714)
...+++=|.+....-..++.-...|.+|++|.+.... -..+..-++.+|+|+++.++.+......+|..+-.+
T Consensus 30 qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-------L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l 102 (1255)
T KOG0444|consen 30 QMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-------LISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRL 102 (1255)
T ss_pred HhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-------hHhhhhhhccchhhHHHhhhccccccCCCCchhccc
Confidence 3445565665322112222212456677777776543 222333455678888888888876666677665444
Q ss_pred hhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEeeeecccccccccCHHHHHHHHhhCCCCceEEeccccCc
Q 044164 186 PSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTAL 265 (714)
Q Consensus 186 ~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l 265 (714)
. .|+.|+|++|.. ...+.-+..-+++-.|+++.+. .+.| ...+..++..|-.|++++. ++
T Consensus 103 ~----dLt~lDLShNqL-------~EvP~~LE~AKn~iVLNLS~N~----IetI----Pn~lfinLtDLLfLDLS~N-rL 162 (1255)
T KOG0444|consen 103 K----DLTILDLSHNQL-------REVPTNLEYAKNSIVLNLSYNN----IETI----PNSLFINLTDLLFLDLSNN-RL 162 (1255)
T ss_pred c----cceeeecchhhh-------hhcchhhhhhcCcEEEEcccCc----cccC----CchHHHhhHhHhhhccccc-hh
Confidence 4 888888887532 1222223344677777773330 1111 1222234455666666532 22
Q ss_pred CCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCcccc
Q 044164 266 SSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICRE 345 (714)
Q Consensus 266 ~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~ 345 (714)
+.++.-...+.+|++|++++.+-. ...+..+ ..+.+|+.|++++.+..-.+
T Consensus 163 -------------------------e~LPPQ~RRL~~LqtL~Ls~NPL~---hfQLrQL-PsmtsL~vLhms~TqRTl~N 213 (1255)
T KOG0444|consen 163 -------------------------EMLPPQIRRLSMLQTLKLSNNPLN---HFQLRQL-PSMTSLSVLHMSNTQRTLDN 213 (1255)
T ss_pred -------------------------hhcCHHHHHHhhhhhhhcCCChhh---HHHHhcC-ccchhhhhhhcccccchhhc
Confidence 122233445567888888876521 1112111 22334555666553221111
Q ss_pred CCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCC
Q 044164 346 IDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYL 425 (714)
Q Consensus 346 i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l 425 (714)
+ ...+..+.||..++++.+ +++- ++.-.-.+++|+.|+++++. ||.-.+. .... .+|+.|+++.+...
T Consensus 214 ~-----Ptsld~l~NL~dvDlS~N-~Lp~--vPecly~l~~LrrLNLS~N~-iteL~~~--~~~W-~~lEtLNlSrNQLt 281 (1255)
T KOG0444|consen 214 I-----PTSLDDLHNLRDVDLSEN-NLPI--VPECLYKLRNLRRLNLSGNK-ITELNMT--EGEW-ENLETLNLSRNQLT 281 (1255)
T ss_pred C-----CCchhhhhhhhhcccccc-CCCc--chHHHhhhhhhheeccCcCc-eeeeecc--HHHH-hhhhhhccccchhc
Confidence 1 113345567788888743 3321 12222336778888888776 5542211 1111 57777777776543
Q ss_pred CchhHHHHHHhcCCCCCEEEEeccc
Q 044164 426 NTVCSLQALEPIRDRIQRLHVDCVW 450 (714)
Q Consensus 426 ~~~~~l~~l~~~~~~L~~L~l~C~~ 450 (714)
.++.-...++.|+.|.++.+.
T Consensus 282 ----~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 282 ----VLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred ----cchHHHhhhHHHHHHHhccCc
Confidence 334333344566666553333
No 19
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.84 E-value=9.7e-11 Score=131.66 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=83.3
Q ss_pred CCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhhhcChHH
Q 044164 412 KTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEE 491 (714)
Q Consensus 412 ~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 491 (714)
+.|+.|.+.++.. ++..++.+.. .+.|+.|+++-+.+..+....+
T Consensus 359 ~~Lq~LylanN~L--td~c~p~l~~-~~hLKVLhLsyNrL~~fpas~~-------------------------------- 403 (1081)
T KOG0618|consen 359 AALQELYLANNHL--TDSCFPVLVN-FKHLKVLHLSYNRLNSFPASKL-------------------------------- 403 (1081)
T ss_pred HHHHHHHHhcCcc--cccchhhhcc-ccceeeeeecccccccCCHHHH--------------------------------
Confidence 4566666666553 3556666654 3688888887666544444443
Q ss_pred HhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccc
Q 044164 492 ASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLN 571 (714)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~ 571 (714)
.+|+.|+.|.+ +|+.|+.++.. +-+|+.|+.|... +|+... -|
T Consensus 404 ---------------------~kle~LeeL~L---SGNkL~~Lp~t-va~~~~L~tL~ah--sN~l~~-fP--------- 446 (1081)
T KOG0618|consen 404 ---------------------RKLEELEELNL---SGNKLTTLPDT-VANLGRLHTLRAH--SNQLLS-FP--------- 446 (1081)
T ss_pred ---------------------hchHHhHHHhc---ccchhhhhhHH-HHhhhhhHHHhhc--CCceee-ch---------
Confidence 56788888888 77778888744 7778888888875 555432 11
Q ss_pred cccCCccccccccccCccccccccCCCCCccchhhHHhhhcc
Q 044164 572 SLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 572 ~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~ 613 (714)
.++.+|.|+.+|+++|++.-.++. .-.- -++|+-|+|.|
T Consensus 447 e~~~l~qL~~lDlS~N~L~~~~l~--~~~p-~p~LkyLdlSG 485 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLSCNNLSEVTLP--EALP-SPNLKYLDLSG 485 (1081)
T ss_pred hhhhcCcceEEecccchhhhhhhh--hhCC-CcccceeeccC
Confidence 568888888999999987766652 1111 15666666666
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.77 E-value=1.3e-09 Score=122.79 Aligned_cols=83 Identities=14% Similarity=0.177 Sum_probs=42.2
Q ss_pred CCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHh
Q 044164 357 LWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEP 436 (714)
Q Consensus 357 ~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~ 436 (714)
...+|++++++... ++ .++.....|++|+.+++..+. ++.-. ..+... ++|+.|.+..|..- -++....
T Consensus 239 ~p~nl~~~dis~n~-l~--~lp~wi~~~~nle~l~~n~N~-l~~lp-~ri~~~--~~L~~l~~~~nel~----yip~~le 307 (1081)
T KOG0618|consen 239 VPLNLQYLDISHNN-LS--NLPEWIGACANLEALNANHNR-LVALP-LRISRI--TSLVSLSAAYNELE----YIPPFLE 307 (1081)
T ss_pred ccccceeeecchhh-hh--cchHHHHhcccceEecccchh-HHhhH-HHHhhh--hhHHHHHhhhhhhh----hCCCccc
Confidence 34567777777654 22 223434447778777776665 32221 222222 56666666665421 1111222
Q ss_pred cCCCCCEEEEeccc
Q 044164 437 IRDRIQRLHVDCVW 450 (714)
Q Consensus 437 ~~~~L~~L~l~C~~ 450 (714)
...+|++|++.-+.
T Consensus 308 ~~~sL~tLdL~~N~ 321 (1081)
T KOG0618|consen 308 GLKSLRTLDLQSNN 321 (1081)
T ss_pred ccceeeeeeehhcc
Confidence 24567777774343
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=9e-09 Score=107.36 Aligned_cols=189 Identities=16% Similarity=0.128 Sum_probs=103.8
Q ss_pred hcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccccc
Q 044164 158 EHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFL 236 (714)
Q Consensus 158 ~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~ 236 (714)
+++.+|+.+.|.++.+..-....... .|++++.|+++.|-+ .....+..++..+|+|+.|++ .+.+.
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k----~~~~v~~LdLS~NL~----~nw~~v~~i~eqLp~Le~LNls~Nrl~---- 185 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSK----ILPNVRDLDLSRNLF----HNWFPVLKIAEQLPSLENLNLSSNRLS---- 185 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhh----hCCcceeecchhhhH----HhHHHHHHHHHhcccchhccccccccc----
Confidence 34667777777776543222212233 344888888887544 334567777778888888888 33311
Q ss_pred cccCHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCC
Q 044164 237 GFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRD 316 (714)
Q Consensus 237 ~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~ 316 (714)
...+.... ...++|+.|.++.|. ++...+..+...+|+|+.|.+.....+..
T Consensus 186 -~~~~s~~~---~~l~~lK~L~l~~CG------------------------ls~k~V~~~~~~fPsl~~L~L~~N~~~~~ 237 (505)
T KOG3207|consen 186 -NFISSNTT---LLLSHLKQLVLNSCG------------------------LSWKDVQWILLTFPSLEVLYLEANEIILI 237 (505)
T ss_pred -CCccccch---hhhhhhheEEeccCC------------------------CCHHHHHHHHHhCCcHHHhhhhcccccce
Confidence 01111111 134677888887772 34566667777788888888877643322
Q ss_pred ChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHH-----HHHhcCCCccEEE
Q 044164 317 TWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALI-----AISLGCSNLTKFE 391 (714)
Q Consensus 317 ~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~-----~l~~~~~~L~~L~ 391 (714)
... - ......|++|+|++ +.+.+......++.+|+|+.|+++.|. +++.... .....+|+|++|+
T Consensus 238 ~~~-~---~~i~~~L~~LdLs~-----N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~ 307 (505)
T KOG3207|consen 238 KAT-S---TKILQTLQELDLSN-----NNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLN 307 (505)
T ss_pred ecc-h---hhhhhHHhhccccC-----CcccccccccccccccchhhhhccccC-cchhcCCCccchhhhcccccceeee
Confidence 110 0 12234577778776 333332112345677777777777765 3332211 1123345666666
Q ss_pred EeCCC
Q 044164 392 VQGCN 396 (714)
Q Consensus 392 L~~c~ 396 (714)
+..++
T Consensus 308 i~~N~ 312 (505)
T KOG3207|consen 308 ISENN 312 (505)
T ss_pred cccCc
Confidence 65555
No 22
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.64 E-value=1.6e-10 Score=118.77 Aligned_cols=106 Identities=20% Similarity=0.318 Sum_probs=71.7
Q ss_pred ccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccccc
Q 044164 514 TWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFA 593 (714)
Q Consensus 514 ~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~ 593 (714)
.+++|..|++ ..+.+.++|.+ ++.+-.|+.|.|++ | +-...|. .+.....|+.+-.+.|.+...-
T Consensus 433 ~l~kLt~L~L---~NN~Ln~LP~e-~~~lv~Lq~LnlS~--N-rFr~lP~--------~~y~lq~lEtllas~nqi~~vd 497 (565)
T KOG0472|consen 433 QLQKLTFLDL---SNNLLNDLPEE-MGSLVRLQTLNLSF--N-RFRMLPE--------CLYELQTLETLLASNNQIGSVD 497 (565)
T ss_pred hhhcceeeec---ccchhhhcchh-hhhhhhhheecccc--c-ccccchH--------HHhhHHHHHHHHhccccccccC
Confidence 4678888888 66788888876 66788899999974 2 3333333 2333334444444445433322
Q ss_pred ccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeeccc
Q 044164 594 LTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGT 659 (714)
Q Consensus 594 ~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 659 (714)
|+|...|.++.+++|+. |.+ .++|.. ++||++|+.|.+.|.
T Consensus 498 ---~~~l~nm~nL~tLDL~n-------------------Ndl-q~IPp~--LgnmtnL~hLeL~gN 538 (565)
T KOG0472|consen 498 ---PSGLKNMRNLTTLDLQN-------------------NDL-QQIPPI--LGNMTNLRHLELDGN 538 (565)
T ss_pred ---hHHhhhhhhcceeccCC-------------------Cch-hhCChh--hccccceeEEEecCC
Confidence 66788888888888877 543 278888 999999999999964
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.55 E-value=3.6e-08 Score=114.21 Aligned_cols=261 Identities=18% Similarity=0.144 Sum_probs=137.2
Q ss_pred CCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEeeeecccccccccC
Q 044164 161 PSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVG 240 (714)
Q Consensus 161 ~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~i~ 240 (714)
..-..|+++++.. + .+|..+. ++|+.|++.+|.. ..+ ...+++|++|++.++ .++
T Consensus 201 ~~~~~LdLs~~~L-t-sLP~~l~------~~L~~L~L~~N~L--t~L--------P~lp~~Lk~LdLs~N-------~Lt 255 (788)
T PRK15387 201 NGNAVLNVGESGL-T-TLPDCLP------AHITTLVIPDNNL--TSL--------PALPPELRTLEVSGN-------QLT 255 (788)
T ss_pred CCCcEEEcCCCCC-C-cCCcchh------cCCCEEEccCCcC--CCC--------CCCCCCCcEEEecCC-------ccC
Confidence 4466677777652 2 3443321 2778888876422 111 123577788877333 122
Q ss_pred HHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChHH
Q 044164 241 DETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPA 320 (714)
Q Consensus 241 ~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~ 320 (714)
.+....++|+.|++.++. ++. +.. ..++|+.|+++++. ++.
T Consensus 256 -----sLP~lp~sL~~L~Ls~N~-L~~-------------------------Lp~---lp~~L~~L~Ls~N~-Lt~---- 296 (788)
T PRK15387 256 -----SLPVLPPGLLELSIFSNP-LTH-------------------------LPA---LPSGLCKLWIFGNQ-LTS---- 296 (788)
T ss_pred -----cccCcccccceeeccCCc-hhh-------------------------hhh---chhhcCEEECcCCc-ccc----
Confidence 111223567777776541 211 111 12457777777653 221
Q ss_pred HHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCH
Q 044164 321 LELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITK 400 (714)
Q Consensus 321 l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~ 400 (714)
+....++|+.|++++ +.++... . ...+|+.|.+.+|. ++. +.. ..++|+.|+|++|. ++.
T Consensus 297 ---LP~~p~~L~~LdLS~-----N~L~~Lp---~--lp~~L~~L~Ls~N~-L~~--LP~---lp~~Lq~LdLS~N~-Ls~ 356 (788)
T PRK15387 297 ---LPVLPPGLQELSVSD-----NQLASLP---A--LPSELCKLWAYNNQ-LTS--LPT---LPSGLQELSVSDNQ-LAS 356 (788)
T ss_pred ---ccccccccceeECCC-----CccccCC---C--CcccccccccccCc-ccc--ccc---cccccceEecCCCc-cCC
Confidence 112346788888876 2332211 1 12457777777654 332 221 12468888887766 443
Q ss_pred HHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccccCCccccc
Q 044164 401 MGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQ 480 (714)
Q Consensus 401 ~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 480 (714)
++. .. ++|+.|++++|... .++. ..++|+.|+++.+.++. .+
T Consensus 357 --LP~---lp-~~L~~L~Ls~N~L~----~LP~---l~~~L~~LdLs~N~Lt~--LP----------------------- 398 (788)
T PRK15387 357 --LPT---LP-SELYKLWAYNNRLT----SLPA---LPSGLKELIVSGNRLTS--LP----------------------- 398 (788)
T ss_pred --CCC---CC-cccceehhhccccc----cCcc---cccccceEEecCCcccC--CC-----------------------
Confidence 222 12 57777777765422 1222 22467778774444321 11
Q ss_pred hhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCC
Q 044164 481 TEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQ 560 (714)
Q Consensus 481 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~ 560 (714)
...++|+.|++ .+..++.+|.. ..+|+.|.++ .|... .
T Consensus 399 --------------------------------~l~s~L~~LdL---S~N~LssIP~l----~~~L~~L~Ls--~NqLt-~ 436 (788)
T PRK15387 399 --------------------------------VLPSELKELMV---SGNRLTSLPML----PSGLLSLSVY--RNQLT-R 436 (788)
T ss_pred --------------------------------CcccCCCEEEc---cCCcCCCCCcc----hhhhhhhhhc--cCccc-c
Confidence 11245666666 34445555532 3467777775 33332 3
Q ss_pred CcccccccccccccCCccccccccccCcccccc
Q 044164 561 KPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFA 593 (714)
Q Consensus 561 ~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~ 593 (714)
.|. ++..++.|+.++|+.|.++|.+
T Consensus 437 LP~--------sl~~L~~L~~LdLs~N~Ls~~~ 461 (788)
T PRK15387 437 LPE--------SLIHLSSETTVNLEGNPLSERT 461 (788)
T ss_pred cCh--------HHhhccCCCeEECCCCCCCchH
Confidence 455 6677888888889888888876
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=3.8e-08 Score=102.76 Aligned_cols=217 Identities=18% Similarity=0.180 Sum_probs=142.1
Q ss_pred cCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEeeeecccccccccCHHHHHHHHhhCCCCceEEeccccCcCCC
Q 044164 189 AASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSN 268 (714)
Q Consensus 189 ~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~ 268 (714)
.++|+++.+.++. +...+.......||+++.|+++-+. .-.-..+..++..+|+|+.|+++.. .+..+
T Consensus 120 ~kkL~~IsLdn~~-----V~~~~~~~~~k~~~~v~~LdLS~NL------~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~ 187 (505)
T KOG3207|consen 120 LKKLREISLDNYR-----VEDAGIEEYSKILPNVRDLDLSRNL------FHNWFPVLKIAEQLPSLENLNLSSN-RLSNF 187 (505)
T ss_pred HHhhhheeecCcc-----ccccchhhhhhhCCcceeecchhhh------HHhHHHHHHHHHhcccchhcccccc-cccCC
Confidence 3489999999733 3333333567789999999994331 2233567778899999999999843 33222
Q ss_pred CCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCC
Q 044164 269 SSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDS 348 (714)
Q Consensus 269 ~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~ 348 (714)
. ...+.. ..++|+.|.++.|. + +......++..+|+|+.|.+.... .+..
T Consensus 188 ----~------------~s~~~~-------~l~~lK~L~l~~CG-l--s~k~V~~~~~~fPsl~~L~L~~N~----~~~~ 237 (505)
T KOG3207|consen 188 ----I------------SSNTTL-------LLSHLKQLVLNSCG-L--SWKDVQWILLTFPSLEVLYLEANE----IILI 237 (505)
T ss_pred ----c------------cccchh-------hhhhhheEEeccCC-C--CHHHHHHHHHhCCcHHHhhhhccc----ccce
Confidence 0 001111 34889999999996 3 344577788899999999998732 2222
Q ss_pred cchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHH-----HHHcCCCeeEEEeeCCC
Q 044164 349 SMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIF-----ARVLEKTLVDVRISSCK 423 (714)
Q Consensus 349 ~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l-----~~~~~~~L~~L~L~~C~ 423 (714)
. ......+..|+.|+|++...++-.. ......+|.|+.|.++.|. +++-..... ... +++|++|++..++
T Consensus 238 ~--~~~~~i~~~L~~LdLs~N~li~~~~-~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~-f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 238 K--ATSTKILQTLQELDLSNNNLIDFDQ-GYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKTHT-FPKLEYLNISENN 312 (505)
T ss_pred e--cchhhhhhHHhhccccCCccccccc-ccccccccchhhhhccccC-cchhcCCCccchhhhcc-cccceeeecccCc
Confidence 1 1123356789999999987654333 3444558999999999887 554333222 233 3999999999987
Q ss_pred CCCchhHHHHHHhcCCCCCEEEEeccccccc
Q 044164 424 YLNTVCSLQALEPIRDRIQRLHVDCVWESVE 454 (714)
Q Consensus 424 ~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~ 454 (714)
-. +-.++..+. .+++|++|.+.|+.++.+
T Consensus 313 I~-~w~sl~~l~-~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 313 IR-DWRSLNHLR-TLENLKHLRITLNYLNKE 341 (505)
T ss_pred cc-cccccchhh-ccchhhhhhccccccccc
Confidence 53 223343443 357888888877776544
No 25
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.45 E-value=1.1e-07 Score=69.98 Aligned_cols=35 Identities=40% Similarity=0.801 Sum_probs=30.7
Q ss_pred cCCCcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhHh
Q 044164 13 HDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLER 49 (714)
Q Consensus 13 ~~~LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~~ 49 (714)
.+ ||+||+.+||+|| +.+|+.++++|||+|+++..
T Consensus 2 ~~-LP~Eil~~If~~L-~~~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 2 SS-LPDEILLEIFSYL-DPRDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CC-S-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHHT
T ss_pred hH-hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHC
Confidence 36 9999999999999 89999999999999999864
No 26
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.43 E-value=2.4e-07 Score=107.46 Aligned_cols=83 Identities=22% Similarity=0.182 Sum_probs=56.6
Q ss_pred ccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccccccc
Q 044164 516 TKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALT 595 (714)
Q Consensus 516 ~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~ 595 (714)
.+|+.|.+ .++.++.+|.. .++|+.|+++ + ++-...|. ...+|+.++|..|.++ .+
T Consensus 382 ~~L~~LdL---s~N~Lt~LP~l----~s~L~~LdLS--~-N~LssIP~-----------l~~~L~~L~Ls~NqLt-~L-- 437 (788)
T PRK15387 382 SGLKELIV---SGNRLTSLPVL----PSELKELMVS--G-NRLTSLPM-----------LPSGLLSLSVYRNQLT-RL-- 437 (788)
T ss_pred cccceEEe---cCCcccCCCCc----ccCCCEEEcc--C-CcCCCCCc-----------chhhhhhhhhccCccc-cc--
Confidence 45777776 44555666532 3578999885 2 22222333 1236788999999876 23
Q ss_pred CCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchh
Q 044164 596 APRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAA 642 (714)
Q Consensus 596 ~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 642 (714)
|..+..++.++.++|.+ |.+++..|.+
T Consensus 438 -P~sl~~L~~L~~LdLs~-------------------N~Ls~~~~~~ 464 (788)
T PRK15387 438 -PESLIHLSSETTVNLEG-------------------NPLSERTLQA 464 (788)
T ss_pred -ChHHhhccCCCeEECCC-------------------CCCCchHHHH
Confidence 88888888888888888 9999888766
No 27
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.15 E-value=1.8e-08 Score=103.96 Aligned_cols=115 Identities=16% Similarity=0.193 Sum_probs=77.2
Q ss_pred ccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhcc
Q 044164 534 IRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 534 l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~ 613 (714)
.+...+..+++|..|.++ |-.....|. .+...-.|+.++|+.|+|.. -|...-.+..+|.+.-..
T Consensus 426 fv~~~l~~l~kLt~L~L~---NN~Ln~LP~--------e~~~lv~Lq~LnlS~NrFr~----lP~~~y~lq~lEtllas~ 490 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLS---NNLLNDLPE--------EMGSLVRLQTLNLSFNRFRM----LPECLYELQTLETLLASN 490 (565)
T ss_pred cchHHHHhhhcceeeecc---cchhhhcch--------hhhhhhhhheeccccccccc----chHHHhhHHHHHHHHhcc
Confidence 334446667788888885 222333455 55666668888888887553 144333333333333322
Q ss_pred ccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeec----cchhHHHHHHHhcCCCccccccccccCCCCC
Q 044164 614 IENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIH----GTANEHFMSFFLKIPTLRDVQLREDYYPAPE 688 (714)
Q Consensus 614 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 688 (714)
||. +++|++|+ +++.+|.+|++. -++|+.+|++ .||+.+.++..-|--|-
T Consensus 491 -------------------nqi-~~vd~~~l-~nm~nL~tLDL~nNdlq~IPp~Lgnm----tnL~hLeL~gNpfr~Pr 544 (565)
T KOG0472|consen 491 -------------------NQI-GSVDPSGL-KNMRNLTTLDLQNNDLQQIPPILGNM----TNLRHLELDGNPFRQPR 544 (565)
T ss_pred -------------------ccc-cccChHHh-hhhhhcceeccCCCchhhCChhhccc----cceeEEEecCCccCCCH
Confidence 454 57787764 579999999998 8999999999 89999999988776653
No 28
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.00 E-value=0.00012 Score=72.59 Aligned_cols=117 Identities=16% Similarity=0.163 Sum_probs=63.9
Q ss_pred CCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcch----HHHhcCCcCcceeeeecCCCCCHH
Q 044164 300 LPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMP----AAGVALWKGLESLSIKNSADLTDS 375 (714)
Q Consensus 300 ~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~----l~~l~~~~~L~~L~L~~c~~ltd~ 375 (714)
-|.|++.......--..+-.-.....+.-.+|+.+.+.+ +.|...+. ..++..|++|+.|+|+++. +|-.
T Consensus 156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~q-----NgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~ 229 (388)
T COG5238 156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQ-----NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLE 229 (388)
T ss_pred CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeee-----cCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhh
Confidence 466666655443211111111222333345677777766 34443321 1234577788888888765 4555
Q ss_pred HHHHHHhc---CCCccEEEEeCCCCCCHHHHHHHHHHc----CCCeeEEEeeCCC
Q 044164 376 ALIAISLG---CSNLTKFEVQGCNKITKMGMQIFARVL----EKTLVDVRISSCK 423 (714)
Q Consensus 376 ~l~~l~~~---~~~L~~L~L~~c~~lt~~~l~~l~~~~----~~~L~~L~L~~C~ 423 (714)
+-..++.. .+.|+.|.+.+|- ++.+|..++...+ .|+|..|...++.
T Consensus 230 gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 230 GSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred hHHHHHHHhcccchhhhccccchh-hccccHHHHHHHhhhhcCCCccccccchhh
Confidence 44444432 3567888888886 6666666655432 4677777666654
No 29
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.95 E-value=2.7e-05 Score=90.21 Aligned_cols=91 Identities=23% Similarity=0.293 Sum_probs=38.5
Q ss_pred HHHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCH
Q 044164 295 DFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTD 374 (714)
Q Consensus 295 ~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd 374 (714)
.+...+|.|++|.+.+-.-..+ .+..+..++|+|..|+|++ ..+++ +.++..+++|+.|.+.+-..-+-
T Consensus 142 kig~~LPsL~sL~i~~~~~~~~---dF~~lc~sFpNL~sLDIS~-----TnI~n---l~GIS~LknLq~L~mrnLe~e~~ 210 (699)
T KOG3665|consen 142 KIGTMLPSLRSLVISGRQFDND---DFSQLCASFPNLRSLDISG-----TNISN---LSGISRLKNLQVLSMRNLEFESY 210 (699)
T ss_pred HHhhhCcccceEEecCceecch---hHHHHhhccCccceeecCC-----CCccC---cHHHhccccHHHHhccCCCCCch
Confidence 3333445555555543211111 1334444555555555554 12222 23444555555555554332222
Q ss_pred HHHHHHHhcCCCccEEEEeCCCC
Q 044164 375 SALIAISLGCSNLTKFEVQGCNK 397 (714)
Q Consensus 375 ~~l~~l~~~~~~L~~L~L~~c~~ 397 (714)
..+..+.. +++|+.|||+.-..
T Consensus 211 ~~l~~LF~-L~~L~vLDIS~~~~ 232 (699)
T KOG3665|consen 211 QDLIDLFN-LKKLRVLDISRDKN 232 (699)
T ss_pred hhHHHHhc-ccCCCeeecccccc
Confidence 33333333 45555555554443
No 30
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.94 E-value=2.5e-06 Score=63.05 Aligned_cols=36 Identities=36% Similarity=0.652 Sum_probs=30.2
Q ss_pred CcCCCcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhHh
Q 044164 12 FHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLER 49 (714)
Q Consensus 12 ~~~~LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~~ 49 (714)
+.+ ||+|++.+||+|| +.+++.++++|||+|+++..
T Consensus 3 ~~~-LP~~il~~Il~~l-~~~~~~~l~~vsk~~~~~~~ 38 (48)
T PF00646_consen 3 LSD-LPDEILQEILSYL-DPKDLLRLSLVSKRWRSLVD 38 (48)
T ss_dssp HHH-S-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHT
T ss_pred HHH-CCHHHHHHHHHHC-cHHHHHHHHHHhhHHHHHHc
Confidence 457 9999999999999 89999999999999999754
No 31
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.94 E-value=1.3e-05 Score=56.93 Aligned_cols=33 Identities=27% Similarity=0.476 Sum_probs=30.7
Q ss_pred CcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhHh
Q 044164 16 LPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLER 49 (714)
Q Consensus 16 LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~~ 49 (714)
||+|++.+||.|+ +.+|+.+++.|||+|+.+..
T Consensus 1 lP~~ll~~I~~~l-~~~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKL-PPKDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999 78999999999999999753
No 32
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=9.3e-06 Score=77.19 Aligned_cols=91 Identities=19% Similarity=0.307 Sum_probs=73.0
Q ss_pred HHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHH
Q 044164 352 AAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSL 431 (714)
Q Consensus 352 l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l 431 (714)
++.+..++.++.|.+.+|..+.|.++..+....++|+.|+|++|+.||+.|+..+.+. ++|+.|.|.+-+.+......
T Consensus 118 le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l--knLr~L~l~~l~~v~~~e~~ 195 (221)
T KOG3864|consen 118 LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL--KNLRRLHLYDLPYVANLELV 195 (221)
T ss_pred HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh--hhhHHHHhcCchhhhchHHH
Confidence 4566788999999999999999999999999899999999999999999999998776 99999999887766322222
Q ss_pred -HHHHhcCCCCCEE
Q 044164 432 -QALEPIRDRIQRL 444 (714)
Q Consensus 432 -~~l~~~~~~L~~L 444 (714)
..+...+|+++..
T Consensus 196 ~~~Le~aLP~c~I~ 209 (221)
T KOG3864|consen 196 QRQLEEALPKCDIV 209 (221)
T ss_pred HHHHHHhCccccee
Confidence 2334455655443
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.83 E-value=3.2e-06 Score=80.76 Aligned_cols=130 Identities=15% Similarity=0.172 Sum_probs=49.9
Q ss_pred cCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHH
Q 044164 299 SLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALI 378 (714)
Q Consensus 299 ~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~ 378 (714)
++-++++|++.++. ++. ++.+...+.+|+.|++++ +.++. ++++..+++|+.|+++++. |++.+ .
T Consensus 17 n~~~~~~L~L~~n~-I~~----Ie~L~~~l~~L~~L~Ls~-----N~I~~---l~~l~~L~~L~~L~L~~N~-I~~i~-~ 81 (175)
T PF14580_consen 17 NPVKLRELNLRGNQ-IST----IENLGATLDKLEVLDLSN-----NQITK---LEGLPGLPRLKTLDLSNNR-ISSIS-E 81 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TT-----S--S-----TT----TT--EEE--SS----S-C-H
T ss_pred cccccccccccccc-ccc----ccchhhhhcCCCEEECCC-----CCCcc---ccCccChhhhhhcccCCCC-CCccc-c
Confidence 34578999998874 211 333334578999999998 45554 3577788999999999875 55431 2
Q ss_pred HHHhcCCCccEEEEeCCCCCCHH-HHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEE
Q 044164 379 AISLGCSNLTKFEVQGCNKITKM-GMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHV 446 (714)
Q Consensus 379 ~l~~~~~~L~~L~L~~c~~lt~~-~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l 446 (714)
.+...+|+|+.|.++++. |.+. .+..+ ..+ |+|+.|++.+||......--..+...+|+|+.|+-
T Consensus 82 ~l~~~lp~L~~L~L~~N~-I~~l~~l~~L-~~l-~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 82 GLDKNLPNLQELYLSNNK-ISDLNELEPL-SSL-PKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp HHHHH-TT--EEE-TTS----SCCCCGGG-GG--TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred chHHhCCcCCEEECcCCc-CCChHHhHHH-HcC-CCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 333458999999998877 5442 22333 345 99999999999966333223345567899999964
No 34
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.83 E-value=3.3e-05 Score=89.44 Aligned_cols=61 Identities=18% Similarity=0.298 Sum_probs=34.0
Q ss_pred CCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEeeeecccccccccCHHHHHHHHhhCCCCceEEeccc
Q 044164 191 SLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADS 262 (714)
Q Consensus 191 ~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c 262 (714)
+|++|+|++. ..+..+-...+...+|+|++|.+... .+....+..+..+.|+|..|+|+++
T Consensus 123 nL~~LdI~G~----~~~s~~W~~kig~~LPsL~sL~i~~~-------~~~~~dF~~lc~sFpNL~sLDIS~T 183 (699)
T KOG3665|consen 123 NLQHLDISGS----ELFSNGWPKKIGTMLPSLRSLVISGR-------QFDNDDFSQLCASFPNLRSLDISGT 183 (699)
T ss_pred hhhhcCcccc----chhhccHHHHHhhhCcccceEEecCc-------eecchhHHHHhhccCccceeecCCC
Confidence 6777777652 22444455555566666666666222 2222335555666666666666654
No 35
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.77 E-value=3.5e-05 Score=90.17 Aligned_cols=15 Identities=7% Similarity=0.268 Sum_probs=9.8
Q ss_pred ccccccccccCcccc
Q 044164 577 PQLSRMHFDCGDAIG 591 (714)
Q Consensus 577 ~~L~~~~l~~~~~~~ 591 (714)
+.|+.++|+.|.+++
T Consensus 367 ~~L~~LdLs~N~Lt~ 381 (754)
T PRK15370 367 PTITTLDVSRNALTN 381 (754)
T ss_pred CCcCEEECCCCcCCC
Confidence 466777777776553
No 36
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=97.77 E-value=6.4e-05 Score=87.99 Aligned_cols=114 Identities=18% Similarity=0.204 Sum_probs=57.9
Q ss_pred CcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHH
Q 044164 301 PLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAI 380 (714)
Q Consensus 301 p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l 380 (714)
.+.+.|++++.. ++.- +..+ .++|+.|++.+ +.++..+ .. .+++|+.|++++|. ++. +...
T Consensus 178 ~~~~~L~L~~~~-LtsL---P~~I---p~~L~~L~Ls~-----N~LtsLP--~~--l~~nL~~L~Ls~N~-Lts--LP~~ 238 (754)
T PRK15370 178 NNKTELRLKILG-LTTI---PACI---PEQITTLILDN-----NELKSLP--EN--LQGNIKTLYANSNQ-LTS--IPAT 238 (754)
T ss_pred cCceEEEeCCCC-cCcC---Cccc---ccCCcEEEecC-----CCCCcCC--hh--hccCCCEEECCCCc-ccc--CChh
Confidence 346777776642 2221 1111 24678888876 3333321 11 23578888888764 432 1111
Q ss_pred HhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEe
Q 044164 381 SLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVD 447 (714)
Q Consensus 381 ~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~ 447 (714)
..++|+.|+|++|. ++. ++. ..+++|+.|++++|. +. .++. ...++|+.|+++
T Consensus 239 --l~~~L~~L~Ls~N~-L~~--LP~---~l~s~L~~L~Ls~N~-L~---~LP~--~l~~sL~~L~Ls 291 (754)
T PRK15370 239 --LPDTIQEMELSINR-ITE--LPE---RLPSALQSLDLFHNK-IS---CLPE--NLPEELRYLSVY 291 (754)
T ss_pred --hhccccEEECcCCc-cCc--CCh---hHhCCCCEEECcCCc-cC---cccc--ccCCCCcEEECC
Confidence 12467888887776 442 111 111578888887654 31 1221 123567778774
No 37
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.70 E-value=0.001 Score=66.13 Aligned_cols=64 Identities=17% Similarity=0.346 Sum_probs=37.2
Q ss_pred cCcceeeeecCCCCCHHHHHHHH----hcCCCccEEEEeCCCCCCHHHHHHHHHHc--CCCeeEEEeeCCCC
Q 044164 359 KGLESLSIKNSADLTDSALIAIS----LGCSNLTKFEVQGCNKITKMGMQIFARVL--EKTLVDVRISSCKY 424 (714)
Q Consensus 359 ~~L~~L~L~~c~~ltd~~l~~l~----~~~~~L~~L~L~~c~~lt~~~l~~l~~~~--~~~L~~L~L~~C~~ 424 (714)
.+|+.+.|..+. |-.+++..++ ..|.+|+.|+|.++. +|-.|-..++..+ ++.|+.|.+..|-.
T Consensus 185 ~~lk~vki~qNg-Irpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDCll 254 (388)
T COG5238 185 ENLKEVKIQQNG-IRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDCLL 254 (388)
T ss_pred cCceeEEeeecC-cCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccchhh
Confidence 467777776654 5555554432 236667777776666 5666555555433 34566666666643
No 38
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.63 E-value=4.7e-05 Score=90.54 Aligned_cols=60 Identities=27% Similarity=0.238 Sum_probs=34.6
Q ss_pred HHhcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe
Q 044164 156 LFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA 227 (714)
Q Consensus 156 ~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L 227 (714)
++..+|.|+.|||++|.. -..+|..++.+- +||+|++++ + +++ .++.-+.++.+|.+|++
T Consensus 566 ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li----~LryL~L~~-t----~I~--~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSS-LSKLPSSIGELV----HLRYLDLSD-T----GIS--HLPSGLGNLKKLIYLNL 625 (889)
T ss_pred HHhhCcceEEEECCCCCc-cCcCChHHhhhh----hhhcccccC-C----Ccc--ccchHHHHHHhhheecc
Confidence 355667777777776552 234555555555 777777764 1 122 44455555666666666
No 39
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.44 E-value=5.6e-05 Score=75.79 Aligned_cols=66 Identities=17% Similarity=0.202 Sum_probs=35.5
Q ss_pred cCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHH-HHHHHHHcCCCeeEEEeeCCCCC
Q 044164 356 ALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMG-MQIFARVLEKTLVDVRISSCKYL 425 (714)
Q Consensus 356 ~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~-l~~l~~~~~~~L~~L~L~~C~~l 425 (714)
..+|++..+.+..|. +.+..-..-...+|.+.-|.+.... |.+.+ +..+ ..+ +.|..|.+.+++..
T Consensus 196 r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~-idswasvD~L-n~f-~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 196 RIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANN-IDSWASVDAL-NGF-PQLVDLRVSENPLS 262 (418)
T ss_pred hhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcccc-cccHHHHHHH-cCC-chhheeeccCCccc
Confidence 355677777776665 3333222223335666666665444 44433 3333 233 77777777777755
No 40
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.27 E-value=7.9e-05 Score=68.87 Aligned_cols=123 Identities=19% Similarity=0.295 Sum_probs=93.8
Q ss_pred cccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccc
Q 044164 515 WTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFAL 594 (714)
Q Consensus 515 ~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~ 594 (714)
.+..+.|.+ +...++..++ ++.++.+|+.|.+. |-+--..|. +++.+|+|+.+.+.-|.+.
T Consensus 32 ~s~ITrLtL---SHNKl~~vpp-nia~l~nlevln~~---nnqie~lp~--------~issl~klr~lnvgmnrl~---- 92 (264)
T KOG0617|consen 32 MSNITRLTL---SHNKLTVVPP-NIAELKNLEVLNLS---NNQIEELPT--------SISSLPKLRILNVGMNRLN---- 92 (264)
T ss_pred hhhhhhhhc---ccCceeecCC-cHHHhhhhhhhhcc---cchhhhcCh--------hhhhchhhhheecchhhhh----
Confidence 344444444 3344565554 47788899999985 233333455 8899999999999999855
Q ss_pred cCCCCCccchhhHHhhhccccccccccCCCCCCCCcccccc-ccCcchhhhHHHhhhhhheeec----cchhHHHHHHHh
Q 044164 595 TAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQR-SLSLPAAGLLSQCRSLRKLFIH----GTANEHFMSFFL 669 (714)
Q Consensus 595 ~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~~~~~~ 669 (714)
.-|.|||.+|-+|.++|.- |.+ +-++|+. .+-+.+||-|++. -.+|+.++.+
T Consensus 93 ~lprgfgs~p~levldlty-------------------nnl~e~~lpgn--ff~m~tlralyl~dndfe~lp~dvg~l-- 149 (264)
T KOG0617|consen 93 ILPRGFGSFPALEVLDLTY-------------------NNLNENSLPGN--FFYMTTLRALYLGDNDFEILPPDVGKL-- 149 (264)
T ss_pred cCccccCCCchhhhhhccc-------------------cccccccCCcc--hhHHHHHHHHHhcCCCcccCChhhhhh--
Confidence 3499999999999999977 444 4489988 8889999999998 7789999999
Q ss_pred cCCCcccccccc
Q 044164 670 KIPTLRDVQLRE 681 (714)
Q Consensus 670 ~~~~l~~~~~~~ 681 (714)
.||..+.+|+
T Consensus 150 --t~lqil~lrd 159 (264)
T KOG0617|consen 150 --TNLQILSLRD 159 (264)
T ss_pred --cceeEEeecc
Confidence 7888888884
No 41
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.17 E-value=0.00019 Score=68.42 Aligned_cols=81 Identities=17% Similarity=0.340 Sum_probs=68.6
Q ss_pred cceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCC
Q 044164 361 LESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDR 440 (714)
Q Consensus 361 L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~ 440 (714)
++.++-+++. |..+|+..+.. ++.++.|.+.+|..+.|+++..+.... ++|+.|+|++|+.+ |+.++..+.. +++
T Consensus 103 IeaVDAsds~-I~~eGle~L~~-l~~i~~l~l~~ck~~dD~~L~~l~~~~-~~L~~L~lsgC~rI-T~~GL~~L~~-lkn 177 (221)
T KOG3864|consen 103 IEAVDASDSS-IMYEGLEHLRD-LRSIKSLSLANCKYFDDWCLERLGGLA-PSLQDLDLSGCPRI-TDGGLACLLK-LKN 177 (221)
T ss_pred EEEEecCCch-HHHHHHHHHhc-cchhhhheeccccchhhHHHHHhcccc-cchheeeccCCCee-chhHHHHHHH-hhh
Confidence 4555555554 77888888765 899999999999999999999998865 99999999999999 6778888765 489
Q ss_pred CCEEEE
Q 044164 441 IQRLHV 446 (714)
Q Consensus 441 L~~L~l 446 (714)
|+.|+|
T Consensus 178 Lr~L~l 183 (221)
T KOG3864|consen 178 LRRLHL 183 (221)
T ss_pred hHHHHh
Confidence 999988
No 42
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.08 E-value=0.00011 Score=70.32 Aligned_cols=108 Identities=23% Similarity=0.296 Sum_probs=48.3
Q ss_pred cCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHh-cCCcCcceeeeecCCCCCH-HH
Q 044164 299 SLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGV-ALWKGLESLSIKNSADLTD-SA 376 (714)
Q Consensus 299 ~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l-~~~~~L~~L~L~~c~~ltd-~~ 376 (714)
.+.+|+.|++++|. ++. +.. ...+++|++|++.+ +.++..+ ..+ ..+|+|+.|+++++. |.+ ..
T Consensus 40 ~l~~L~~L~Ls~N~-I~~----l~~-l~~L~~L~~L~L~~-----N~I~~i~--~~l~~~lp~L~~L~L~~N~-I~~l~~ 105 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQ-ITK----LEG-LPGLPRLKTLDLSN-----NRISSIS--EGLDKNLPNLQELYLSNNK-ISDLNE 105 (175)
T ss_dssp T-TT--EEE-TTS---S------TT-----TT--EEE--S-----S---S-C--HHHHHH-TT--EEE-TTS----SCCC
T ss_pred hhcCCCEEECCCCC-Ccc----ccC-ccChhhhhhcccCC-----CCCCccc--cchHHhCCcCCEEECcCCc-CCChHH
Confidence 45789999999875 322 222 25678999999987 6666542 234 468999999999864 433 12
Q ss_pred HHHHHhcCCCccEEEEeCCCCCCHH-HHH-HHHHHcCCCeeEEEeeCCC
Q 044164 377 LIAISLGCSNLTKFEVQGCNKITKM-GMQ-IFARVLEKTLVDVRISSCK 423 (714)
Q Consensus 377 l~~l~~~~~~L~~L~L~~c~~lt~~-~l~-~l~~~~~~~L~~L~L~~C~ 423 (714)
+..+ ..+|+|+.|++.++| +++. ... .+...+ |+|+.||-....
T Consensus 106 l~~L-~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~l-P~Lk~LD~~~V~ 151 (175)
T PF14580_consen 106 LEPL-SSLPKLRVLSLEGNP-VCEKKNYRLFVIYKL-PSLKVLDGQDVT 151 (175)
T ss_dssp CGGG-GG-TT--EEE-TT-G-GGGSTTHHHHHHHH--TT-SEETTEETT
T ss_pred hHHH-HcCCCcceeeccCCc-ccchhhHHHHHHHHc-ChhheeCCEEcc
Confidence 3334 348999999999998 5532 222 233455 999999876544
No 43
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=0.00043 Score=69.61 Aligned_cols=199 Identities=17% Similarity=0.148 Sum_probs=104.0
Q ss_pred ChHHHHHHHhcCCCCceEEecCccccCCCh--HHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEE
Q 044164 149 IGYDFFALFEHCPSLSSIDLSHFYCWTEDL--PTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLL 226 (714)
Q Consensus 149 ~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~--~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~ 226 (714)
+...+..+...++.++.|||.++.. .+|- ...+..+| .|+.|+|+.|.. ...+..+.....+|+.|-
T Consensus 59 ~~gd~~~~~~~~~~v~elDL~~N~i-SdWseI~~ile~lP----~l~~LNls~N~L------~s~I~~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 59 NEGDVMLFGSSVTDVKELDLTGNLI-SDWSEIGAILEQLP----ALTTLNLSCNSL------SSDIKSLPLPLKNLRVLV 127 (418)
T ss_pred cchhHHHHHHHhhhhhhhhcccchh-ccHHHHHHHHhcCc----cceEeeccCCcC------CCccccCcccccceEEEE
Confidence 3445555666778888888887753 3332 22344444 888888885432 111222222345777777
Q ss_pred eeeecccccccccCHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccce
Q 044164 227 ATCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEEL 306 (714)
Q Consensus 227 L~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L 306 (714)
++.+ .+.-....+.....|.+++|++++. ++..+ ...+..+.+ .-|.+++|
T Consensus 128 LNgT-------~L~w~~~~s~l~~lP~vtelHmS~N-~~rq~-------------n~Dd~c~e~--------~s~~v~tl 178 (418)
T KOG2982|consen 128 LNGT-------GLSWTQSTSSLDDLPKVTELHMSDN-SLRQL-------------NLDDNCIED--------WSTEVLTL 178 (418)
T ss_pred EcCC-------CCChhhhhhhhhcchhhhhhhhccc-hhhhh-------------ccccccccc--------cchhhhhh
Confidence 7544 4555566666677788888888743 11111 000011111 11345555
Q ss_pred ecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCH-HHHHHHHhcCC
Q 044164 307 VLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTD-SALIAISLGCS 385 (714)
Q Consensus 307 ~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd-~~l~~l~~~~~ 385 (714)
..-.|...... ....+.+..|++..+.+..|+ +.+...-+....+|.+--|++.... |.+ .++.++ .++|
T Consensus 179 h~~~c~~~~w~--~~~~l~r~Fpnv~sv~v~e~P-----lK~~s~ek~se~~p~~~~LnL~~~~-idswasvD~L-n~f~ 249 (418)
T KOG2982|consen 179 HQLPCLEQLWL--NKNKLSRIFPNVNSVFVCEGP-----LKTESSEKGSEPFPSLSCLNLGANN-IDSWASVDAL-NGFP 249 (418)
T ss_pred hcCCcHHHHHH--HHHhHHhhcccchheeeecCc-----ccchhhcccCCCCCcchhhhhcccc-cccHHHHHHH-cCCc
Confidence 55555422111 122344667888888776521 1111001233344555566666543 443 344444 4588
Q ss_pred CccEEEEeCCC
Q 044164 386 NLTKFEVQGCN 396 (714)
Q Consensus 386 ~L~~L~L~~c~ 396 (714)
.|..|.+...+
T Consensus 250 ~l~dlRv~~~P 260 (418)
T KOG2982|consen 250 QLVDLRVSENP 260 (418)
T ss_pred hhheeeccCCc
Confidence 99999988887
No 44
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.82 E-value=0.0005 Score=69.10 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=26.9
Q ss_pred CcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCC
Q 044164 358 WKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCK 423 (714)
Q Consensus 358 ~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~ 423 (714)
.+.|+.|+++++. |+. +..-.+-.|+++.|+++.+. |+. +..++. + ++|+.||++++.
T Consensus 283 Wq~LtelDLS~N~-I~~--iDESvKL~Pkir~L~lS~N~-i~~--v~nLa~-L-~~L~~LDLS~N~ 340 (490)
T KOG1259|consen 283 WQELTELDLSGNL-ITQ--IDESVKLAPKLRRLILSQNR-IRT--VQNLAE-L-PQLQLLDLSGNL 340 (490)
T ss_pred Hhhhhhccccccc-hhh--hhhhhhhccceeEEeccccc-eee--ehhhhh-c-ccceEeecccch
Confidence 3456666666543 221 11112224666666666655 222 112222 2 566666666644
No 45
>PLN03150 hypothetical protein; Provisional
Probab=96.79 E-value=0.00054 Score=79.56 Aligned_cols=72 Identities=19% Similarity=0.239 Sum_probs=46.8
Q ss_pred cccCCccccccccccCccccccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhh
Q 044164 572 SLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSL 651 (714)
Q Consensus 572 ~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 651 (714)
.+..+++|+.++|+.|.+.|.+ |..++.|+.|+.|+|.+ |+++|.+|+. ++++++|
T Consensus 437 ~i~~L~~L~~L~Ls~N~l~g~i---P~~~~~l~~L~~LdLs~-------------------N~lsg~iP~~--l~~L~~L 492 (623)
T PLN03150 437 DISKLRHLQSINLSGNSIRGNI---PPSLGSITSLEVLDLSY-------------------NSFNGSIPES--LGQLTSL 492 (623)
T ss_pred HHhCCCCCCEEECCCCcccCcC---ChHHhCCCCCCEEECCC-------------------CCCCCCCchH--HhcCCCC
Confidence 5566666666666666666655 66566666666666666 6666666666 6666677
Q ss_pred hheeec-----cchhHHHHHH
Q 044164 652 RKLFIH-----GTANEHFMSF 667 (714)
Q Consensus 652 ~~l~~~-----~~~~~~~~~~ 667 (714)
+.|+++ |.+|+.+...
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CEEECcCCcccccCChHHhhc
Confidence 776665 5666666554
No 46
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.71 E-value=0.00049 Score=69.14 Aligned_cols=128 Identities=17% Similarity=0.228 Sum_probs=73.1
Q ss_pred cCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHH
Q 044164 299 SLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALI 378 (714)
Q Consensus 299 ~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~ 378 (714)
.+..|+++++++.. ++. +.+-..-.|.++.|++++ +.+... +.++.+++|+.|+++++. ++ .+.
T Consensus 282 TWq~LtelDLS~N~-I~~----iDESvKL~Pkir~L~lS~-----N~i~~v---~nLa~L~~L~~LDLS~N~-Ls--~~~ 345 (490)
T KOG1259|consen 282 TWQELTELDLSGNL-ITQ----IDESVKLAPKLRRLILSQ-----NRIRTV---QNLAELPQLQLLDLSGNL-LA--ECV 345 (490)
T ss_pred hHhhhhhccccccc-hhh----hhhhhhhccceeEEeccc-----cceeee---hhhhhcccceEeecccch-hH--hhh
Confidence 34567888887742 221 222335668888888877 444432 356777888888888764 22 222
Q ss_pred HHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEE-ecc
Q 044164 379 AISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHV-DCV 449 (714)
Q Consensus 379 ~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l-~C~ 449 (714)
..-..+-+.++|.+.++. |.+ +..+.+. -+|.+||++++..- ....+..++ .+|.|+.|.+ +.|
T Consensus 346 Gwh~KLGNIKtL~La~N~-iE~--LSGL~KL--YSLvnLDl~~N~Ie-~ldeV~~IG-~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 346 GWHLKLGNIKTLKLAQNK-IET--LSGLRKL--YSLVNLDLSSNQIE-ELDEVNHIG-NLPCLETLRLTGNP 410 (490)
T ss_pred hhHhhhcCEeeeehhhhh-Hhh--hhhhHhh--hhheeccccccchh-hHHHhcccc-cccHHHHHhhcCCC
Confidence 333335677888887776 221 2222222 47888888876522 222233333 3577777777 544
No 47
>PLN03150 hypothetical protein; Provisional
Probab=96.71 E-value=0.00071 Score=78.55 Aligned_cols=77 Identities=23% Similarity=0.285 Sum_probs=57.9
Q ss_pred cccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhc
Q 044164 533 PIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLN 612 (714)
Q Consensus 533 ~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~ 612 (714)
.++. .+.++++|+.|.++ +|...+..|. .+..+++|+.++|+.|.+.|.+ |..++.|+.|+.|+|.
T Consensus 433 ~ip~-~i~~L~~L~~L~Ls--~N~l~g~iP~--------~~~~l~~L~~LdLs~N~lsg~i---P~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 433 FIPN-DISKLRHLQSINLS--GNSIRGNIPP--------SLGSITSLEVLDLSYNSFNGSI---PESLGQLTSLRILNLN 498 (623)
T ss_pred cCCH-HHhCCCCCCEEECC--CCcccCcCCh--------HHhCCCCCCEEECCCCCCCCCC---chHHhcCCCCCEEECc
Confidence 4443 37778888888886 5555556666 6788888888888888888877 8877888878888777
Q ss_pred cccccccccCCCCCCCCccccccccCcchh
Q 044164 613 GIENLNLKELNYWPPQDMDVHQRSLSLPAA 642 (714)
Q Consensus 613 ~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 642 (714)
+ |+++|.+|++
T Consensus 499 ~-------------------N~l~g~iP~~ 509 (623)
T PLN03150 499 G-------------------NSLSGRVPAA 509 (623)
T ss_pred C-------------------CcccccCChH
Confidence 7 7777777765
No 48
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.56 E-value=0.0027 Score=75.90 Aligned_cols=105 Identities=21% Similarity=0.137 Sum_probs=71.0
Q ss_pred hCCCeeEEEEeecCh--hhH-HHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHH
Q 044164 106 AFPSVVSLTIYARSP--LTL-HFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAF 182 (714)
Q Consensus 106 ~~p~L~~L~l~~~~~--~~l-~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l 182 (714)
..|.+++|-+..... ... ..+...+|.|+.|+++++.. ...++..++.+-+|++|++++..+ ..+|..+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~------l~~LP~~I~~Li~LryL~L~~t~I--~~LP~~l 614 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS------LSKLPSSIGELVHLRYLDLSDTGI--SHLPSGL 614 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc------cCcCChHHhhhhhhhcccccCCCc--cccchHH
Confidence 345677777654321 111 22235689999999998753 344556678888999999998864 3788888
Q ss_pred HhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEee
Q 044164 183 ELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLAT 228 (714)
Q Consensus 183 ~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L~ 228 (714)
+.+. .|.+|++.++ .... .+..+...+++|++|.+.
T Consensus 615 ~~Lk----~L~~Lnl~~~-~~l~-----~~~~i~~~L~~Lr~L~l~ 650 (889)
T KOG4658|consen 615 GNLK----KLIYLNLEVT-GRLE-----SIPGILLELQSLRVLRLP 650 (889)
T ss_pred HHHH----hhheeccccc-cccc-----cccchhhhcccccEEEee
Confidence 8887 9999999962 2111 123444557889999883
No 49
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.51 E-value=0.00014 Score=75.82 Aligned_cols=43 Identities=23% Similarity=0.260 Sum_probs=19.9
Q ss_pred ccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCH
Q 044164 326 SKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTD 374 (714)
Q Consensus 326 ~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd 374 (714)
+.+++|++|+|++ +.|+..+ .+.+...++|.+|.+.+.++|++
T Consensus 88 ~~l~~LRrLdLS~-----N~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~ 130 (498)
T KOG4237|consen 88 KTLHRLRRLDLSK-----NNISFIA-PDAFKGLASLLSLVLYGNNKITD 130 (498)
T ss_pred cchhhhceecccc-----cchhhcC-hHhhhhhHhhhHHHhhcCCchhh
Confidence 4455555555554 3333322 23444445555555554444444
No 50
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.27 E-value=0.0042 Score=39.15 Aligned_cols=22 Identities=36% Similarity=0.812 Sum_probs=10.6
Q ss_pred CCccEEEEeCCCCCCHHHHHHH
Q 044164 385 SNLTKFEVQGCNKITKMGMQIF 406 (714)
Q Consensus 385 ~~L~~L~L~~c~~lt~~~l~~l 406 (714)
++|+.|+|++|+.|||.|+..+
T Consensus 2 ~~L~~L~l~~C~~itD~gl~~l 23 (26)
T smart00367 2 PNLRELDLSGCTNITDEGLQAL 23 (26)
T ss_pred CCCCEeCCCCCCCcCHHHHHHH
Confidence 4444444444444454444444
No 51
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.27 E-value=0.0038 Score=39.30 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.1
Q ss_pred CcCcceeeeecCCCCCHHHHHHHH
Q 044164 358 WKGLESLSIKNSADLTDSALIAIS 381 (714)
Q Consensus 358 ~~~L~~L~L~~c~~ltd~~l~~l~ 381 (714)
|++|++|+|++|.+|||.++.+++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 678888888888888888888775
No 52
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=96.06 E-value=0.00071 Score=70.61 Aligned_cols=255 Identities=15% Similarity=0.121 Sum_probs=127.0
Q ss_pred HhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHH
Q 044164 297 FESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSA 376 (714)
Q Consensus 297 ~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~ 376 (714)
++.+++|+.|+|+.. +++.-. ..+ .+.+++|.+|.+.+ .+.|++.. -..++.+..|+.|.+.-|. ++ -.
T Consensus 87 F~~l~~LRrLdLS~N-~Is~I~--p~A-F~GL~~l~~Lvlyg----~NkI~~l~-k~~F~gL~slqrLllNan~-i~-Ci 155 (498)
T KOG4237|consen 87 FKTLHRLRRLDLSKN-NISFIA--PDA-FKGLASLLSLVLYG----NNKITDLP-KGAFGGLSSLQRLLLNANH-IN-CI 155 (498)
T ss_pred ccchhhhceeccccc-chhhcC--hHh-hhhhHhhhHHHhhc----CCchhhhh-hhHhhhHHHHHHHhcChhh-hc-ch
Confidence 556788888888875 333221 222 25567777777766 35555542 4466777777777776543 22 12
Q ss_pred HHHHHhcCCCccEEEEeCCCCCCHHHHHHHHH----HcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEeccccc
Q 044164 377 LIAISLGCSNLTKFEVQGCNKITKMGMQIFAR----VLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWES 452 (714)
Q Consensus 377 l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~----~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~ 452 (714)
.+.....+++|..|.+.++. +..+++ .. ..++.+.+..++.+ .+..++.++... ..+.+.-.|..
T Consensus 156 r~~al~dL~~l~lLslyDn~------~q~i~~~tf~~l-~~i~tlhlA~np~i-cdCnL~wla~~~---a~~~ietsgar 224 (498)
T KOG4237|consen 156 RQDALRDLPSLSLLSLYDNK------IQSICKGTFQGL-AAIKTLHLAQNPFI-CDCNLPWLADDL---AMNPIETSGAR 224 (498)
T ss_pred hHHHHHHhhhcchhcccchh------hhhhccccccch-hccchHhhhcCccc-cccccchhhhHH---hhchhhcccce
Confidence 23333446777777776655 222222 12 46666666666655 233333322210 00111000000
Q ss_pred ccccchhhhhhccCCCCccccCCccccchhHhhhcChHHHhH----hhhcccccCCCCCCCccc----cccccccceeee
Q 044164 453 VEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASL----KKKAKCCDGSGNGFSSCS----DTWTKLKYLSLW 524 (714)
Q Consensus 453 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~----~~~~~L~~L~l~ 524 (714)
-+.+-.+ ......+.+..-+. ....+.....+++ +.++ ..+++|+.|.+
T Consensus 225 c~~p~rl---------------------~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d-~~cP~~cf~~L~~L~~lnl- 281 (498)
T KOG4237|consen 225 CVSPYRL---------------------YYKRINQEDARKFLCSLESLPSRLSSEDFPD-SICPAKCFKKLPNLRKLNL- 281 (498)
T ss_pred ecchHHH---------------------HHHHhcccchhhhhhhHHhHHHhhccccCcC-CcChHHHHhhcccceEecc-
Confidence 0011110 00000011100000 0000001111111 1222 34677888887
Q ss_pred hhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccch
Q 044164 525 IAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLS 604 (714)
Q Consensus 525 ~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~ 604 (714)
.++.++.+....+.+...+++|++. .|....-... -+.++..|+.++|..|.++-++ |-.|-.+-
T Consensus 282 --snN~i~~i~~~aFe~~a~l~eL~L~--~N~l~~v~~~--------~f~~ls~L~tL~L~~N~it~~~---~~aF~~~~ 346 (498)
T KOG4237|consen 282 --SNNKITRIEDGAFEGAAELQELYLT--RNKLEFVSSG--------MFQGLSGLKTLSLYDNQITTVA---PGAFQTLF 346 (498)
T ss_pred --CCCccchhhhhhhcchhhhhhhhcC--cchHHHHHHH--------hhhccccceeeeecCCeeEEEe---cccccccc
Confidence 5667777777778888999999985 3322111111 4577788888999999988877 65554444
Q ss_pred hhHHhhh
Q 044164 605 LWERFYL 611 (714)
Q Consensus 605 ~~~~~~l 611 (714)
.+.+++|
T Consensus 347 ~l~~l~l 353 (498)
T KOG4237|consen 347 SLSTLNL 353 (498)
T ss_pred eeeeeeh
Confidence 3333333
No 53
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=96.05 E-value=0.0041 Score=57.81 Aligned_cols=129 Identities=19% Similarity=0.341 Sum_probs=80.3
Q ss_pred cccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccc
Q 044164 513 DTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGF 592 (714)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~ 592 (714)
..+.+|+.|.+| ...++.+|.. +.++|.|+.|.+. --+.-..|. -+..+|.|+.++|..|.+..-
T Consensus 53 a~l~nlevln~~---nnqie~lp~~-issl~klr~lnvg---mnrl~~lpr--------gfgs~p~levldltynnl~e~ 117 (264)
T KOG0617|consen 53 AELKNLEVLNLS---NNQIEELPTS-ISSLPKLRILNVG---MNRLNILPR--------GFGSFPALEVLDLTYNNLNEN 117 (264)
T ss_pred HHhhhhhhhhcc---cchhhhcChh-hhhchhhhheecc---hhhhhcCcc--------ccCCCchhhhhhccccccccc
Confidence 456677777764 3345566544 6667777777663 222222233 345677788888877777666
Q ss_pred cccCCCCCccchhhHHhhhccccccccccCCCCCCCC-----------ccccccccCcchhhhHHHhhhhhheeecc---
Q 044164 593 ALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQD-----------MDVHQRSLSLPAAGLLSQCRSLRKLFIHG--- 658 (714)
Q Consensus 593 ~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--- 658 (714)
.+ |..|--|.-+..+||+. .+.+|-||.- +|-+. +++|.. ++..+.||.|-|.|
T Consensus 118 ~l--pgnff~m~tlralyl~d------ndfe~lp~dvg~lt~lqil~lrdndl--l~lpke--ig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 118 SL--PGNFFYMTTLRALYLGD------NDFEILPPDVGKLTNLQILSLRDNDL--LSLPKE--IGDLTRLRELHIQGNRL 185 (264)
T ss_pred cC--CcchhHHHHHHHHHhcC------CCcccCChhhhhhcceeEEeeccCch--hhCcHH--HHHHHHHHHHhccccee
Confidence 65 65555566666667654 3333444311 11122 288988 89999999999996
Q ss_pred -chhHHHHHHH
Q 044164 659 -TANEHFMSFF 668 (714)
Q Consensus 659 -~~~~~~~~~~ 668 (714)
.+|++++++-
T Consensus 186 ~vlppel~~l~ 196 (264)
T KOG0617|consen 186 TVLPPELANLD 196 (264)
T ss_pred eecChhhhhhh
Confidence 4788888873
No 54
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=95.97 E-value=0.0055 Score=47.59 Aligned_cols=60 Identities=22% Similarity=0.354 Sum_probs=42.1
Q ss_pred ccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCc
Q 044164 516 TKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGD 588 (714)
Q Consensus 516 ~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~ 588 (714)
++|+.|.+ ....++.++...+.++++|+.|.|+ ++....-.|. .+.++++|+.++++.|.
T Consensus 1 p~L~~L~l---~~n~l~~i~~~~f~~l~~L~~L~l~--~N~l~~i~~~--------~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDL---SNNKLTEIPPDSFSNLPNLETLDLS--NNNLTSIPPD--------AFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEE---TSSTESEECTTTTTTGTTESEEEET--SSSESEEETT--------TTTTSTTESEEEETSSS
T ss_pred CcCcEEEC---CCCCCCccCHHHHcCCCCCCEeEcc--CCccCccCHH--------HHcCCCCCCEEeCcCCc
Confidence 35677777 4456778887778888999999885 3333322223 67888888888888875
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.58 E-value=0.023 Score=61.31 Aligned_cols=139 Identities=18% Similarity=0.259 Sum_probs=77.1
Q ss_pred hhCCCCcEEEe-eeecccccccccCHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHH
Q 044164 217 SACPNLSQLLA-TCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGD 295 (714)
Q Consensus 217 ~~~~~L~~L~L-~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~ 295 (714)
..|++++.|++ +|. +..+..--++|++|.+.+|..++.+ | ..+
T Consensus 49 ~~~~~l~~L~Is~c~-------------L~sLP~LP~sLtsL~Lsnc~nLtsL-----P----------------~~L-- 92 (426)
T PRK15386 49 EEARASGRLYIKDCD-------------IESLPVLPNELTEITIENCNNLTTL-----P----------------GSI-- 92 (426)
T ss_pred HHhcCCCEEEeCCCC-------------CcccCCCCCCCcEEEccCCCCcccC-----C----------------chh--
Confidence 45788889988 553 1222212246888988888765333 0 001
Q ss_pred HHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHH
Q 044164 296 FFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDS 375 (714)
Q Consensus 296 l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~ 375 (714)
.++|+.|++++|..+.. -.++|+.|.+.... |..+. ...++|+.|.+.++......
T Consensus 93 ----P~nLe~L~Ls~Cs~L~s----------LP~sLe~L~L~~n~--~~~L~--------~LPssLk~L~I~~~n~~~~~ 148 (426)
T PRK15386 93 ----PEGLEKLTVCHCPEISG----------LPESVRSLEIKGSA--TDSIK--------NVPNGLTSLSINSYNPENQA 148 (426)
T ss_pred ----hhhhhheEccCcccccc----------cccccceEEeCCCC--Ccccc--------cCcchHhheecccccccccc
Confidence 15788999988865421 12468888875411 11111 12356888887543321111
Q ss_pred HHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCC
Q 044164 376 ALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCK 423 (714)
Q Consensus 376 ~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~ 423 (714)
.+.. .-.++|+.|.+.+|..+. +...++.+|+.|.++.+.
T Consensus 149 ~lp~--~LPsSLk~L~Is~c~~i~------LP~~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 149 RIDN--LISPSLKTLSLTGCSNII------LPEKLPESLQSITLHIEQ 188 (426)
T ss_pred cccc--ccCCcccEEEecCCCccc------CcccccccCcEEEecccc
Confidence 1111 113579999999888542 112223688999887653
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=95.54 E-value=0.0038 Score=69.98 Aligned_cols=48 Identities=19% Similarity=-0.018 Sum_probs=24.8
Q ss_pred HHHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccC
Q 044164 123 LHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWT 175 (714)
Q Consensus 123 l~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~ 175 (714)
+..+...+++++.|++.......+. + .--+-.|.+|+.|.+++|...+
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt--~---pi~ifpF~sLr~LElrg~~L~~ 123 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPT--E---PISIFPFRSLRVLELRGCDLST 123 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCC--C---CceeccccceeeEEecCcchhh
Confidence 4444455666666666544322221 0 1113346677777777776433
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=95.41 E-value=0.025 Score=61.11 Aligned_cols=59 Identities=25% Similarity=0.321 Sum_probs=29.8
Q ss_pred ccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCC
Q 044164 326 SKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKI 398 (714)
Q Consensus 326 ~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~l 398 (714)
..|+++++|++++| .++.. . ...++|++|.+.+|.+++. +.... .++|++|.|++|..+
T Consensus 49 ~~~~~l~~L~Is~c-----~L~sL---P--~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L 107 (426)
T PRK15386 49 EEARASGRLYIKDC-----DIESL---P--VLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEI 107 (426)
T ss_pred HHhcCCCEEEeCCC-----CCccc---C--CCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCcccc
Confidence 44677777777763 22221 0 1223577777777665421 11110 245666666666544
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.14 E-value=0.0064 Score=60.88 Aligned_cols=103 Identities=18% Similarity=0.160 Sum_probs=70.0
Q ss_pred CCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHH
Q 044164 300 LPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIA 379 (714)
Q Consensus 300 ~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~ 379 (714)
+.+.+.|+..+|. ++| ..+...+|.|+.|.|+- +.|+. +..+..|++|+.|+|..+. |.+..-..
T Consensus 18 l~~vkKLNcwg~~-L~D-----Isic~kMp~lEVLsLSv-----NkIss---L~pl~rCtrLkElYLRkN~-I~sldEL~ 82 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDD-----ISICEKMPLLEVLSLSV-----NKISS---LAPLQRCTRLKELYLRKNC-IESLDELE 82 (388)
T ss_pred HHHhhhhcccCCC-ccH-----HHHHHhcccceeEEeec-----ccccc---chhHHHHHHHHHHHHHhcc-cccHHHHH
Confidence 4567888998884 333 24457889999999975 55554 4577889999999998754 55544344
Q ss_pred HHhcCCCccEEEEeCCCCCCHHHHH---HHHHHcCCCeeEEE
Q 044164 380 ISLGCSNLTKFEVQGCNKITKMGMQ---IFARVLEKTLVDVR 418 (714)
Q Consensus 380 l~~~~~~L~~L~L~~c~~lt~~~l~---~l~~~~~~~L~~L~ 418 (714)
...++|+|+.|.|..++-....|-. .....+ |+|+.||
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~L-PnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVL-PNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccchhHHHHHHHHc-ccchhcc
Confidence 4567899999999877654444322 223344 8888775
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.88 E-value=0.0095 Score=59.39 Aligned_cols=90 Identities=12% Similarity=0.164 Sum_probs=60.9
Q ss_pred HhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCH-HHHHHHHHHcCCCeeEEEeeCCCCCCchhHHH
Q 044164 354 GVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITK-MGMQIFARVLEKTLVDVRISSCKYLNTVCSLQ 432 (714)
Q Consensus 354 ~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~-~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~ 432 (714)
.+-.+|+|+.|.++....--..++..++..||+|++|+++++. |.+ ..+..+... ++|..|++.+|.-..-+.-=.
T Consensus 60 ~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l--~nL~~Ldl~n~~~~~l~dyre 136 (260)
T KOG2739|consen 60 NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKEL--ENLKSLDLFNCSVTNLDDYRE 136 (260)
T ss_pred cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccchhhhh--cchhhhhcccCCccccccHHH
Confidence 4446789999999876433356777788889999999999988 553 223333333 889999999998653221122
Q ss_pred HHHhcCCCCCEEEE
Q 044164 433 ALEPIRDRIQRLHV 446 (714)
Q Consensus 433 ~l~~~~~~L~~L~l 446 (714)
.+...+|+|+.|+-
T Consensus 137 ~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 137 KVFLLLPSLKYLDG 150 (260)
T ss_pred HHHHHhhhhccccc
Confidence 33445677877765
No 60
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.79 E-value=0.0096 Score=66.95 Aligned_cols=82 Identities=18% Similarity=0.248 Sum_probs=47.0
Q ss_pred cccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccc-cCCCCcccccccccccccCCccccccccccCcccc
Q 044164 513 DTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDC-RNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~-~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~ 591 (714)
..+++|++|+| ..+-+.-+|..+...|. |.-|.|+ +|- +++ .-+.++.+|..++++.|-+.|
T Consensus 206 r~l~~LkhLDl---syN~L~~vp~l~~~gc~-L~~L~lr--nN~l~tL-----------~gie~LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 206 RRLPKLKHLDL---SYNCLRHVPQLSMVGCK-LQLLNLR--NNALTTL-----------RGIENLKSLYGLDLSYNLLSE 268 (1096)
T ss_pred Hhccccccccc---ccchhccccccchhhhh-heeeeec--ccHHHhh-----------hhHHhhhhhhccchhHhhhhc
Confidence 34556666665 22334445555555566 7777776 221 111 245667777777777777777
Q ss_pred ccccCCCCCccchhhHHhhhcc
Q 044164 592 FALTAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 592 ~~~~~p~~~~~l~~~~~~~l~~ 613 (714)
+.=..| .+.|+.+..|+|.|
T Consensus 269 hseL~p--LwsLs~L~~L~LeG 288 (1096)
T KOG1859|consen 269 HSELEP--LWSLSSLIVLWLEG 288 (1096)
T ss_pred chhhhH--HHHHHHHHHHhhcC
Confidence 653233 33566677777777
No 61
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=94.76 E-value=0.016 Score=44.90 Aligned_cols=58 Identities=19% Similarity=0.418 Sum_probs=44.9
Q ss_pred CCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhcc
Q 044164 543 PILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 543 ~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~ 613 (714)
|+|+.|.++ ++.-...|. ..+.++++|+.++|+.|.+.+.. |..+.+|+.++.+++.+
T Consensus 1 p~L~~L~l~---~n~l~~i~~-------~~f~~l~~L~~L~l~~N~l~~i~---~~~f~~l~~L~~L~l~~ 58 (61)
T PF13855_consen 1 PNLESLDLS---NNKLTEIPP-------DSFSNLPNLETLDLSNNNLTSIP---PDAFSNLPNLRYLDLSN 58 (61)
T ss_dssp TTESEEEET---SSTESEECT-------TTTTTGTTESEEEETSSSESEEE---TTTTTTSTTESEEEETS
T ss_pred CcCcEEECC---CCCCCccCH-------HHHcCCCCCCEeEccCCccCccC---HHHHcCCCCCCEEeCcC
Confidence 678999995 343333333 37889999999999999998766 77788898888888877
No 62
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.53 E-value=0.017 Score=57.89 Aligned_cols=30 Identities=17% Similarity=0.191 Sum_probs=13.7
Q ss_pred CeeEEEEeecChhhHHHHcccCCCCCEEEEe
Q 044164 109 SVVSLTIYARSPLTLHFLAPEWPKLSHVKLV 139 (714)
Q Consensus 109 ~L~~L~l~~~~~~~l~~l~~~~p~L~~L~L~ 139 (714)
++++|+..++.-.++... ..+|.|+.|.|+
T Consensus 20 ~vkKLNcwg~~L~DIsic-~kMp~lEVLsLS 49 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDISIC-EKMPLLEVLSLS 49 (388)
T ss_pred HhhhhcccCCCccHHHHH-HhcccceeEEee
Confidence 445555554444443322 344555544444
No 63
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=93.27 E-value=0.054 Score=55.20 Aligned_cols=38 Identities=34% Similarity=0.626 Sum_probs=31.5
Q ss_pred CCcCCCcHHHHHHHhhcCC----ChhhhHHHHHHhHHHHHhHh
Q 044164 11 NFHDILPDAIMSNIFSLIT----DTRTRNAMSLVCLKWCKLER 49 (714)
Q Consensus 11 ~~~~~LPdeiL~~Ifs~L~----~~~dl~~~slVCkrW~~~~~ 49 (714)
++.. ||||||..||.++- +.+++.++++|||.|+..++
T Consensus 106 ~~~~-LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R 147 (366)
T KOG2997|consen 106 SISV-LPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR 147 (366)
T ss_pred hhhh-CCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence 3456 99999999998762 45899999999999999654
No 64
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=93.01 E-value=0.092 Score=56.08 Aligned_cols=38 Identities=13% Similarity=0.358 Sum_probs=34.3
Q ss_pred CCCcCCCcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhH
Q 044164 10 PNFHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLE 48 (714)
Q Consensus 10 ~~~~~~LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~ 48 (714)
+.|.+ ||+|+|..|..+|+..-|+.+.+.|||.||..+
T Consensus 2 ~~Ws~-Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~ 39 (373)
T PLN03215 2 ADWST-LPEELLHMIAGRLFSNVELKRFRSICRSWRSSV 39 (373)
T ss_pred CChhh-CCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhc
Confidence 35668 999999999999988889999999999999954
No 65
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.42 E-value=0.062 Score=60.00 Aligned_cols=194 Identities=22% Similarity=0.204 Sum_probs=111.0
Q ss_pred CCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEeeeecccccccccCHHHHHHHHhhCC----CCceEEeccccCcC
Q 044164 191 SLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIASNCP----RLSLLHLADSTALS 266 (714)
Q Consensus 191 ~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~i~~~~l~~l~~~~~----~L~~L~L~~c~~l~ 266 (714)
.+..|.+.+|... ......+.......+.|+.|++..+ .+++.+...+....+ .|+.|++..|.
T Consensus 88 ~l~~L~L~~~~l~--~~~~~~l~~~l~t~~~L~~L~l~~n-------~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~--- 155 (478)
T KOG4308|consen 88 SLLHLSLANNRLG--DRGAEELAQALKTLPTLGQLDLSGN-------NLGDEGARLLCEGLRLPQCLLQTLELVSCS--- 155 (478)
T ss_pred hHHHhhhhhCccc--cchHHHHHHHhcccccHhHhhcccC-------CCccHhHHHHHhhcccchHHHHHHHhhccc---
Confidence 3778888864221 1122334444455678888888333 466777777765543 35566666552
Q ss_pred CCCCCCCCCCCCCCCCccCCCcCHHH---HHHHHhcCCcccceecccccCcCCChHHHHHHhc----cCCCccEEEeccc
Q 044164 267 SNSSRADPNNNDEGYASEDARISPTA---LGDFFESLPLLEELVLDVGNNVRDTWPALELLNS----KCPRLKSLKLGQV 339 (714)
Q Consensus 267 ~~~~~~~~~~~l~~l~~~~~~it~~~---l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~----~~~~L~~L~L~~~ 339 (714)
++..+ +...+..++.++.++++.|.-.......+..... ...++++|++.+|
T Consensus 156 ---------------------l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~ 214 (478)
T KOG4308|consen 156 ---------------------LTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRC 214 (478)
T ss_pred ---------------------ccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhc
Confidence 22233 2333344778888888887654222111222222 3556888888773
Q ss_pred cCccccCCCcc---hHHHhcCCcC-cceeeeecCCCCCHHHHHHHHhcC----CCccEEEEeCCCCCCHHHHHHHHH---
Q 044164 340 HGICREIDSSM---PAAGVALWKG-LESLSIKNSADLTDSALIAISLGC----SNLTKFEVQGCNKITKMGMQIFAR--- 408 (714)
Q Consensus 340 ~~~c~~i~~~~---~l~~l~~~~~-L~~L~L~~c~~ltd~~l~~l~~~~----~~L~~L~L~~c~~lt~~~l~~l~~--- 408 (714)
. . +... ....+...+. +..|++..+. +.|.++..+...+ +.++.++++.|. +++.+...+..
T Consensus 215 ~----~-t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~ 287 (478)
T KOG4308|consen 215 G----V-TSSSCALLDEVLASGESLLRELDLASNK-LGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLV 287 (478)
T ss_pred C----c-ChHHHHHHHHHHhccchhhHHHHHHhcC-cchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHh
Confidence 2 1 1111 0112344444 6667777554 6777776665543 355888888887 77776665554
Q ss_pred HcCCCeeEEEeeCCCCC
Q 044164 409 VLEKTLVDVRISSCKYL 425 (714)
Q Consensus 409 ~~~~~L~~L~L~~C~~l 425 (714)
.| +.++.+.+++++..
T Consensus 288 ~~-~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 288 SC-RQLEELSLSNNPLT 303 (478)
T ss_pred hh-HHHHHhhcccCccc
Confidence 44 57888888877755
No 66
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.32 E-value=0.034 Score=62.08 Aligned_cols=117 Identities=15% Similarity=0.298 Sum_probs=65.8
Q ss_pred CCcccceecccccCcCCChHHHHHHhccCCC-ccEEEeccccCccccCCCcchHH----HhcCC-cCcceeeeecCCCCC
Q 044164 300 LPLLEELVLDVGNNVRDTWPALELLNSKCPR-LKSLKLGQVHGICREIDSSMPAA----GVALW-KGLESLSIKNSADLT 373 (714)
Q Consensus 300 ~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~-L~~L~L~~~~~~c~~i~~~~~l~----~l~~~-~~L~~L~L~~c~~lt 373 (714)
..++++|.+.+|.-.......+.......+. +..|++.. +.+.+.+ +. .+..+ ..++.++++.|. |+
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~-----n~l~d~g-~~~L~~~l~~~~~~l~~l~l~~ns-i~ 275 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLAS-----NKLGDVG-VEKLLPCLSVLSETLRVLDLSRNS-IT 275 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHh-----cCcchHH-HHHHHHHhcccchhhhhhhhhcCC-cc
Confidence 4567778887774322221122333344444 55566654 4444432 11 22233 567888888876 66
Q ss_pred HHHHHHH---HhcCCCccEEEEeCCCCCCHHHHHHHHHHc--CCCeeEEEeeCCCC
Q 044164 374 DSALIAI---SLGCSNLTKFEVQGCNKITKMGMQIFARVL--EKTLVDVRISSCKY 424 (714)
Q Consensus 374 d~~l~~l---~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~--~~~L~~L~L~~C~~ 424 (714)
+.+...+ ...|+.++.|.++.++ +++.+...+.... ...+.++.+.++..
T Consensus 276 ~~~~~~L~~~l~~~~~l~~l~l~~n~-l~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 330 (478)
T KOG4308|consen 276 EKGVRDLAEVLVSCRQLEELSLSNNP-LTDYGVELLLEALERKTPLLHLVLGGTGK 330 (478)
T ss_pred ccchHHHHHHHhhhHHHHHhhcccCc-cccHHHHHHHHHhhhcccchhhhccccCc
Confidence 6554443 3447788888887777 7787776666533 14555555554443
No 67
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=91.84 E-value=0.11 Score=37.27 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=7.5
Q ss_pred hcCCcCcceeeeecC
Q 044164 355 VALWKGLESLSIKNS 369 (714)
Q Consensus 355 l~~~~~L~~L~L~~c 369 (714)
++.+++|+.|+++++
T Consensus 20 l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 20 LSNLPNLETLNLSNN 34 (44)
T ss_dssp GTTCTTSSEEEETSS
T ss_pred HhCCCCCCEEEecCC
Confidence 444555555555544
No 68
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=91.84 E-value=0.16 Score=52.22 Aligned_cols=33 Identities=39% Similarity=0.671 Sum_probs=30.8
Q ss_pred CCc----HHHHHHHhhcCCChhhhHHHHHHhHHHHHhH
Q 044164 15 ILP----DAIMSNIFSLITDTRTRNAMSLVCLKWCKLE 48 (714)
Q Consensus 15 ~LP----deiL~~Ifs~L~~~~dl~~~slVCkrW~~~~ 48 (714)
.|| ++|-+.||+|| +..+++++-+|||+|+++.
T Consensus 77 ~lP~~gl~hi~e~ilsyl-d~~sLc~celv~k~W~r~l 113 (499)
T KOG0281|consen 77 ALPEQGLDHIAENILSYL-DALSLCACELVCKEWKRVL 113 (499)
T ss_pred hcccccHHHHHHHHHHhc-chhhhhHHHHHHHHHHHHh
Confidence 499 99999999999 8999999999999999964
No 69
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=91.22 E-value=0.28 Score=35.23 Aligned_cols=13 Identities=15% Similarity=0.240 Sum_probs=6.3
Q ss_pred CCCccEEEEeCCC
Q 044164 384 CSNLTKFEVQGCN 396 (714)
Q Consensus 384 ~~~L~~L~L~~c~ 396 (714)
+++|+.|++++|+
T Consensus 23 l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 23 LPNLETLNLSNNP 35 (44)
T ss_dssp CTTSSEEEETSSC
T ss_pred CCCCCEEEecCCC
Confidence 4444444444443
No 70
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.98 E-value=0.15 Score=31.19 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=10.7
Q ss_pred CCccEEEEeCCCCCCHHHHHHHH
Q 044164 385 SNLTKFEVQGCNKITKMGMQIFA 407 (714)
Q Consensus 385 ~~L~~L~L~~c~~lt~~~l~~l~ 407 (714)
++|++|+|++|. |++.|+..++
T Consensus 2 ~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCEEEccCCc-CCHHHHHHhC
Confidence 455555555555 5555555443
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=90.24 E-value=0.18 Score=50.51 Aligned_cols=37 Identities=41% Similarity=0.503 Sum_probs=18.0
Q ss_pred CCcccceecccccCcCCChHHHHHHhccCCCccEEEecc
Q 044164 300 LPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQ 338 (714)
Q Consensus 300 ~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~ 338 (714)
+|+|+.|.++... ....+ .+..++..+|+|++|++++
T Consensus 64 Lp~LkkL~lsdn~-~~~~~-~l~vl~e~~P~l~~l~ls~ 100 (260)
T KOG2739|consen 64 LPKLKKLELSDNY-RRVSG-GLEVLAEKAPNLKVLNLSG 100 (260)
T ss_pred cchhhhhcccCCc-ccccc-cceehhhhCCceeEEeecC
Confidence 4566666665431 11111 1334445556666666655
No 72
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=89.94 E-value=0.044 Score=60.30 Aligned_cols=131 Identities=18% Similarity=0.263 Sum_probs=86.8
Q ss_pred cccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccc
Q 044164 513 DTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGF 592 (714)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~ 592 (714)
.++..|++|++ ..+.++.+| .++-.|| |+.|.+. |-+....|. .+...+.|..++-++|++.
T Consensus 118 ~~L~~lt~l~l---s~NqlS~lp-~~lC~lp-Lkvli~s---NNkl~~lp~--------~ig~~~tl~~ld~s~nei~-- 179 (722)
T KOG0532|consen 118 CNLEALTFLDL---SSNQLSHLP-DGLCDLP-LKVLIVS---NNKLTSLPE--------EIGLLPTLAHLDVSKNEIQ-- 179 (722)
T ss_pred hhhhHHHHhhh---ccchhhcCC-hhhhcCc-ceeEEEe---cCccccCCc--------ccccchhHHHhhhhhhhhh--
Confidence 44566677666 333445554 3466666 6666664 222332344 4567778888899999843
Q ss_pred cccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeec----cchhHHHHHHH
Q 044164 593 ALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIH----GTANEHFMSFF 668 (714)
Q Consensus 593 ~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~~~~~ 668 (714)
++|+-++.|..++++...- |+. ..+|+. +. |..|.+|+++ -++|-.|-.|
T Consensus 180 --slpsql~~l~slr~l~vrR-------------------n~l-~~lp~E--l~-~LpLi~lDfScNkis~iPv~fr~m- 233 (722)
T KOG0532|consen 180 --SLPSQLGYLTSLRDLNVRR-------------------NHL-EDLPEE--LC-SLPLIRLDFSCNKISYLPVDFRKM- 233 (722)
T ss_pred --hchHHhhhHHHHHHHHHhh-------------------hhh-hhCCHH--Hh-CCceeeeecccCceeecchhhhhh-
Confidence 5677666666566555554 444 367877 66 8889999999 8999999998
Q ss_pred hcCCCccccccccccCCCCCCC
Q 044164 669 LKIPTLRDVQLREDYYPAPEND 690 (714)
Q Consensus 669 ~~~~~l~~~~~~~~~~~~~~~~ 690 (714)
..|+.+||-..=--.|-.+
T Consensus 234 ---~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 234 ---RHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred ---hhheeeeeccCCCCCChHH
Confidence 8899999977655444433
No 73
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=89.37 E-value=0.32 Score=53.35 Aligned_cols=19 Identities=11% Similarity=0.153 Sum_probs=10.2
Q ss_pred ccCCccccccccccCcccc
Q 044164 573 LVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 573 l~~~~~L~~~~l~~~~~~~ 591 (714)
+....+|+.++++.+.++.
T Consensus 273 ~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 273 LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred ccccCccCEEeccCccccc
Confidence 4455555555555555444
No 74
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=89.20 E-value=0.44 Score=52.22 Aligned_cols=104 Identities=24% Similarity=0.304 Sum_probs=55.7
Q ss_pred CcccceecccccCcCCChHHHHHHhccC-CCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHH
Q 044164 301 PLLEELVLDVGNNVRDTWPALELLNSKC-PRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIA 379 (714)
Q Consensus 301 p~L~~L~L~~c~~l~~~~~~l~~l~~~~-~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~ 379 (714)
+.++.|++... .+++- ....... ++|+.|++.+ +.+... ...++.+++|+.|++.++. +++. ..
T Consensus 116 ~~l~~L~l~~n-~i~~i----~~~~~~~~~nL~~L~l~~-----N~i~~l--~~~~~~l~~L~~L~l~~N~-l~~l--~~ 180 (394)
T COG4886 116 TNLTSLDLDNN-NITDI----PPLIGLLKSNLKELDLSD-----NKIESL--PSPLRNLPNLKNLDLSFND-LSDL--PK 180 (394)
T ss_pred cceeEEecCCc-ccccC----ccccccchhhcccccccc-----cchhhh--hhhhhccccccccccCCch-hhhh--hh
Confidence 56777777653 23221 1222334 2777777766 333332 1356677778888777765 4332 22
Q ss_pred HHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCC
Q 044164 380 ISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCK 423 (714)
Q Consensus 380 l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~ 423 (714)
.....++|+.|+++++. +++- +...... ..|++|.+++++
T Consensus 181 ~~~~~~~L~~L~ls~N~-i~~l--~~~~~~~-~~L~~l~~~~N~ 220 (394)
T COG4886 181 LLSNLSNLNNLDLSGNK-ISDL--PPEIELL-SALEELDLSNNS 220 (394)
T ss_pred hhhhhhhhhheeccCCc-cccC--chhhhhh-hhhhhhhhcCCc
Confidence 22135777777777776 4332 2221121 347777777764
No 75
>PF13013 F-box-like_2: F-box-like domain
Probab=88.88 E-value=0.54 Score=41.02 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=27.7
Q ss_pred CcCCCcHHHHHHHhhcCCChhhhHHHHHHhH--HHHH
Q 044164 12 FHDILPDAIMSNIFSLITDTRTRNAMSLVCL--KWCK 46 (714)
Q Consensus 12 ~~~~LPdeiL~~Ifs~L~~~~dl~~~slVCk--rW~~ 46 (714)
+.| ||+||+..||.|. +..+...+...|+ +|..
T Consensus 22 l~D-LP~ELl~~I~~~C-~~~~l~~l~~~~~~~r~~r 56 (109)
T PF13013_consen 22 LLD-LPWELLQLIFDYC-NDPILLALSRTCRAYRSWR 56 (109)
T ss_pred hhh-ChHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHH
Confidence 448 9999999999999 7888888888888 4444
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=88.53 E-value=0.28 Score=29.99 Aligned_cols=23 Identities=30% Similarity=0.453 Sum_probs=16.9
Q ss_pred CcCcceeeeecCCCCCHHHHHHHH
Q 044164 358 WKGLESLSIKNSADLTDSALIAIS 381 (714)
Q Consensus 358 ~~~L~~L~L~~c~~ltd~~l~~l~ 381 (714)
|++|+.|+|++|. |+++++.+++
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhC
Confidence 5788999999887 8898888775
No 77
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.28 E-value=2.9 Score=26.64 Aligned_cols=24 Identities=13% Similarity=0.336 Sum_probs=14.7
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHH
Q 044164 385 SNLTKFEVQGCNKITKMGMQIFARV 409 (714)
Q Consensus 385 ~~L~~L~L~~c~~lt~~~l~~l~~~ 409 (714)
++|+.|+|++|. ++++|...++..
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHHHH
Confidence 456666666666 666666665543
No 78
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=78.24 E-value=0.95 Score=43.80 Aligned_cols=63 Identities=21% Similarity=0.316 Sum_probs=33.8
Q ss_pred ccCCCccEEEeccccCccccCCCcchHHHh-cCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCC
Q 044164 326 SKCPRLKSLKLGQVHGICREIDSSMPAAGV-ALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCN 396 (714)
Q Consensus 326 ~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l-~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~ 396 (714)
..+++|.+|.+.+ +.|+... ..+ ...|+|+.|.+.++.--.-..+..++. ||+|++|.+-+++
T Consensus 61 p~l~rL~tLll~n-----NrIt~I~--p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~-~p~L~~Ltll~Np 124 (233)
T KOG1644|consen 61 PHLPRLHTLLLNN-----NRITRID--PDLDTFLPNLKTLILTNNSIQELGDLDPLAS-CPKLEYLTLLGNP 124 (233)
T ss_pred CCccccceEEecC-----Ccceeec--cchhhhccccceEEecCcchhhhhhcchhcc-CCccceeeecCCc
Confidence 4556677777765 4444432 122 245667777777643111122333433 7777777777766
No 79
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=72.12 E-value=1.8 Score=41.89 Aligned_cols=89 Identities=10% Similarity=0.012 Sum_probs=54.6
Q ss_pred HHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHH
Q 044164 353 AGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQ 432 (714)
Q Consensus 353 ~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~ 432 (714)
+.+..+++|..|.+.++. |++.. ..+....|+|+.|.+.++.-..-..+..++ .| |+|++|.+-+++... .....
T Consensus 58 ~~lp~l~rL~tLll~nNr-It~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa-~~-p~L~~Ltll~Npv~~-k~~YR 132 (233)
T KOG1644|consen 58 DNLPHLPRLHTLLLNNNR-ITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLA-SC-PKLEYLTLLGNPVEH-KKNYR 132 (233)
T ss_pred ccCCCccccceEEecCCc-ceeec-cchhhhccccceEEecCcchhhhhhcchhc-cC-CccceeeecCCchhc-ccCce
Confidence 355677889999998765 65432 234444789999999887732222233333 45 899999998887441 11111
Q ss_pred -HHHhcCCCCCEEEE
Q 044164 433 -ALEPIRDRIQRLHV 446 (714)
Q Consensus 433 -~l~~~~~~L~~L~l 446 (714)
.....+|+|+.|+.
T Consensus 133 ~yvl~klp~l~~LDF 147 (233)
T KOG1644|consen 133 LYVLYKLPSLRTLDF 147 (233)
T ss_pred eEEEEecCcceEeeh
Confidence 12234577777776
No 80
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=68.29 E-value=6 Score=25.20 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=19.4
Q ss_pred cCcceeeeecCCCCCHHHHHHHHhc
Q 044164 359 KGLESLSIKNSADLTDSALIAISLG 383 (714)
Q Consensus 359 ~~L~~L~L~~c~~ltd~~l~~l~~~ 383 (714)
++|+.|+|+++. +++++...++..
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~~~ 25 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALAEA 25 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHHHH
Confidence 578899999876 889998888764
No 81
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=63.98 E-value=9.2 Score=42.66 Aligned_cols=97 Identities=18% Similarity=0.197 Sum_probs=50.1
Q ss_pred hHHHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCc
Q 044164 122 TLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGH 201 (714)
Q Consensus 122 ~l~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~ 201 (714)
.+.......|.+.++++.+.... .-..+..+....|+|+.|+|+++..+...... +..+ ...-|++|-+.+|
T Consensus 209 ~L~~~~~n~p~i~sl~lsnNrL~----~Ld~~sslsq~apklk~L~LS~N~~~~~~~~e-l~K~--k~l~Leel~l~GN- 280 (585)
T KOG3763|consen 209 VLKHIEENFPEILSLSLSNNRLY----HLDALSSLSQIAPKLKTLDLSHNHSKISSESE-LDKL--KGLPLEELVLEGN- 280 (585)
T ss_pred HHHHhhcCCcceeeeecccchhh----chhhhhHHHHhcchhheeecccchhhhcchhh-hhhh--cCCCHHHeeecCC-
Confidence 34445556666766666654322 13345556666777777777776222111111 1111 1225777777774
Q ss_pred cccCCCCH--HHHHHHHhhCCCCcEEE
Q 044164 202 SFTEGYKS--HELLSITSACPNLSQLL 226 (714)
Q Consensus 202 ~~c~~i~~--~~l~~l~~~~~~L~~L~ 226 (714)
+-|+.|.+ +.+.++...+|+|..|+
T Consensus 281 Plc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 281 PLCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred ccccchhhhHHHHHHHHHhcchheeec
Confidence 33666553 33445555556665554
No 82
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=63.96 E-value=1.8 Score=47.75 Aligned_cols=83 Identities=16% Similarity=0.213 Sum_probs=40.3
Q ss_pred ccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHH
Q 044164 326 SKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQI 405 (714)
Q Consensus 326 ~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~ 405 (714)
..+++|++|++++ +.|++. .++..++.|+.|++.++. |++.. .+ ..+++|+.+++.++. +++..-..
T Consensus 115 ~~~~~L~~L~ls~-----N~I~~i---~~l~~l~~L~~L~l~~N~-i~~~~--~~-~~l~~L~~l~l~~n~-i~~ie~~~ 181 (414)
T KOG0531|consen 115 SSLVNLQVLDLSF-----NKITKL---EGLSTLTLLKELNLSGNL-ISDIS--GL-ESLKSLKLLDLSYNR-IVDIENDE 181 (414)
T ss_pred hhhhcchheeccc-----cccccc---cchhhccchhhheeccCc-chhcc--CC-ccchhhhcccCCcch-hhhhhhhh
Confidence 4566666666665 444443 345555556666666654 32211 11 114556666666655 22221100
Q ss_pred HHHHcCCCeeEEEeeCCC
Q 044164 406 FARVLEKTLVDVRISSCK 423 (714)
Q Consensus 406 l~~~~~~~L~~L~L~~C~ 423 (714)
...+ .+|+.+++.++.
T Consensus 182 -~~~~-~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 182 -LSEL-ISLEELDLGGNS 197 (414)
T ss_pred -hhhc-cchHHHhccCCc
Confidence 1223 566666665554
No 83
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=60.21 E-value=5.1 Score=36.58 Aligned_cols=106 Identities=14% Similarity=0.053 Sum_probs=55.0
Q ss_pred ccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHh
Q 044164 303 LEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISL 382 (714)
Q Consensus 303 L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~ 382 (714)
+..++++.|+-.-... ++ ........|+..+|++ +...+++ -.....++..+.|++.++. |.|-..+ ++.
T Consensus 29 ~h~ldLssc~lm~i~d-av-y~l~~~~el~~i~ls~-----N~fk~fp-~kft~kf~t~t~lNl~~ne-isdvPeE-~Aa 98 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIAD-AV-YMLSKGYELTKISLSD-----NGFKKFP-KKFTIKFPTATTLNLANNE-ISDVPEE-LAA 98 (177)
T ss_pred hhhcccccchhhHHHH-HH-HHHhCCceEEEEeccc-----chhhhCC-HHHhhccchhhhhhcchhh-hhhchHH-Hhh
Confidence 6667788875321111 12 2234455666677766 3333332 2333456677777777654 4443332 333
Q ss_pred cCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCC
Q 044164 383 GCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCK 423 (714)
Q Consensus 383 ~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~ 423 (714)
.|.|+.|+++.++. ... .+.++. + .+|-.|+..++.
T Consensus 99 -m~aLr~lNl~~N~l-~~~-p~vi~~-L-~~l~~Lds~~na 134 (177)
T KOG4579|consen 99 -MPALRSLNLRFNPL-NAE-PRVIAP-L-IKLDMLDSPENA 134 (177)
T ss_pred -hHHhhhcccccCcc-ccc-hHHHHH-H-HhHHHhcCCCCc
Confidence 67777777777773 222 333333 2 455555555443
No 84
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=56.93 E-value=5.2 Score=45.57 Aligned_cols=34 Identities=35% Similarity=0.625 Sum_probs=31.3
Q ss_pred CCcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhHh
Q 044164 15 ILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLER 49 (714)
Q Consensus 15 ~LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~~ 49 (714)
.||.|+-.+||.|| +.+++..+++||+.|+.+..
T Consensus 110 ~lp~el~~~il~~L-d~~~l~~~~~v~~~w~~~~~ 143 (537)
T KOG0274|consen 110 LLPSELSLHILSFL-DGRDLLAVRQVCRNWNKLLD 143 (537)
T ss_pred cccchhcccccccC-CHHHhhhhhhhcchhhhhhh
Confidence 39999999999999 78999999999999999753
No 85
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=50.11 E-value=9.2 Score=42.22 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=16.6
Q ss_pred cCCccccccccccCccccccccCCCCCccchhhHHhhhcc
Q 044164 574 VNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 574 ~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~ 613 (714)
..++.|+.+++..|.+.. ..++..+..++.+++++
T Consensus 137 ~~l~~L~~L~l~~N~i~~-----~~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 137 STLTLLKELNLSGNLISD-----ISGLESLKSLKLLDLSY 171 (414)
T ss_pred hhccchhhheeccCcchh-----ccCCccchhhhcccCCc
Confidence 444446666666665443 22333344444444444
No 86
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=49.10 E-value=12 Score=20.83 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=6.6
Q ss_pred CCeeEEEeeCCC
Q 044164 412 KTLVDVRISSCK 423 (714)
Q Consensus 412 ~~L~~L~L~~C~ 423 (714)
++|+.|+|++|.
T Consensus 1 ~~L~~L~l~~n~ 12 (17)
T PF13504_consen 1 PNLRTLDLSNNR 12 (17)
T ss_dssp TT-SEEEETSS-
T ss_pred CccCEEECCCCC
Confidence 356777777665
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.59 E-value=26 Score=39.25 Aligned_cols=86 Identities=15% Similarity=0.179 Sum_probs=48.2
Q ss_pred CCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCC--CCHHHHHHHHHHcCCCeeEEEeeCCCCCCch----hH
Q 044164 357 LWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNK--ITKMGMQIFARVLEKTLVDVRISSCKYLNTV----CS 430 (714)
Q Consensus 357 ~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~--lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~----~~ 430 (714)
..+.+..++++++.-..-+.+..++...|+|+.|+|+++.. -++..+..+ + +..|++|.+.+++...+- +-
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k--~l~Leel~l~GNPlc~tf~~~s~y 292 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-K--GLPLEELVLEGNPLCTTFSDRSEY 292 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-c--CCCHHHeeecCCccccchhhhHHH
Confidence 44566666666654333344556666677777887777621 122222221 1 256777778777765221 22
Q ss_pred HHHHHhcCCCCCEEE
Q 044164 431 LQALEPIRDRIQRLH 445 (714)
Q Consensus 431 l~~l~~~~~~L~~L~ 445 (714)
+.++...+|.|..|+
T Consensus 293 v~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 293 VSAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHHhcchheeec
Confidence 345556677777775
No 88
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=43.85 E-value=11 Score=22.34 Aligned_cols=12 Identities=8% Similarity=0.194 Sum_probs=7.1
Q ss_pred ccccccccCccc
Q 044164 579 LSRMHFDCGDAI 590 (714)
Q Consensus 579 L~~~~l~~~~~~ 590 (714)
|+.++|+.|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 556666666554
No 89
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=40.11 E-value=6.4 Score=44.04 Aligned_cols=36 Identities=11% Similarity=0.192 Sum_probs=20.0
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCC
Q 044164 386 NLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYL 425 (714)
Q Consensus 386 ~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l 425 (714)
.|..|+++.++ |+. ++.-+..+ +.|++|.+.+++.-
T Consensus 212 pLi~lDfScNk-is~--iPv~fr~m-~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 212 PLIRLDFSCNK-ISY--LPVDFRKM-RHLQVLQLENNPLQ 247 (722)
T ss_pred ceeeeecccCc-eee--cchhhhhh-hhheeeeeccCCCC
Confidence 46677775444 443 22223333 67777777777643
No 90
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=37.35 E-value=54 Score=33.24 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=34.1
Q ss_pred CCCCCcCCCcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhH
Q 044164 8 KVPNFHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLE 48 (714)
Q Consensus 8 ~~~~~~~~LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~ 48 (714)
..+.+.| ||.|++..|+..+++.+|+..++.|-...+.+.
T Consensus 198 ~~ltl~d-LP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~ 237 (332)
T KOG3926|consen 198 AGLTLHD-LPLECVLNILLRLSDHRDLESLAQAWETLAKLS 237 (332)
T ss_pred CCCCccc-chHHHHHHHHHHccCcchHHHHHHhhHHHHHHH
Confidence 4667789 999999999999999999999999877666543
No 91
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=34.90 E-value=34 Score=30.18 Aligned_cols=44 Identities=23% Similarity=0.429 Sum_probs=20.6
Q ss_pred cccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccc
Q 044164 531 LNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFD 585 (714)
Q Consensus 531 l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~ 585 (714)
++.+....+.+|++|+++.+. .+. ...+-..+..++.|+.+.+.
T Consensus 23 ~~~I~~~~F~~~~~l~~i~~~--~~~---------~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 23 IKKIGENAFSNCTSLKSINFP--NNL---------TSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp --EE-TTTTTT-TT-SEEEES--STT---------SCE-TTTTTT-TT-EEEEET
T ss_pred eeEeChhhccccccccccccc--ccc---------cccceeeeeccccccccccc
Confidence 445555556777777777773 221 22233356667667777664
No 92
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=31.33 E-value=30 Score=31.77 Aligned_cols=32 Identities=19% Similarity=0.325 Sum_probs=22.5
Q ss_pred cccccCcchhhhHHHhhhhhheeec----cchhHHHHHH
Q 044164 633 HQRSLSLPAAGLLSQCRSLRKLFIH----GTANEHFMSF 667 (714)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~~~~ 667 (714)
|+++ .+|.. ++-.+.||+|.+. -..|+-|..+
T Consensus 87 neis-dvPeE--~Aam~aLr~lNl~~N~l~~~p~vi~~L 122 (177)
T KOG4579|consen 87 NEIS-DVPEE--LAAMPALRSLNLRFNPLNAEPRVIAPL 122 (177)
T ss_pred hhhh-hchHH--HhhhHHhhhcccccCccccchHHHHHH
Confidence 5543 67877 7888899999888 4555555554
No 93
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=30.09 E-value=44 Score=20.86 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=10.9
Q ss_pred cceeeeecCCCCCHHHHHHHHhcCC
Q 044164 361 LESLSIKNSADLTDSALIAISLGCS 385 (714)
Q Consensus 361 L~~L~L~~c~~ltd~~l~~l~~~~~ 385 (714)
|+.|.|.....-.+..+..+..+||
T Consensus 2 LKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 2 LKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CeEEEeeEEEECChhHHHHhhccCc
Confidence 4445554443222334555544443
No 94
>PHA02698 hypothetical protein; Provisional
Probab=21.78 E-value=41 Score=26.72 Aligned_cols=25 Identities=40% Similarity=0.689 Sum_probs=18.5
Q ss_pred ccccccccccCCCCCCCCccccccchhh
Q 044164 674 LRDVQLREDYYPAPENDTTSEMRVDSCY 701 (714)
Q Consensus 674 l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (714)
|.+||...|.+|.|| .|-.-|.-|+
T Consensus 18 lddvqvnGDlmPtp~---p~peeV~~Cs 42 (89)
T PHA02698 18 LDDVQVNGDLMPTPE---PTPEEVPQCS 42 (89)
T ss_pred HhccccCCcccCCCC---CChhhhccCC
Confidence 689999999999998 2333355664
No 95
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=21.70 E-value=76 Score=26.89 Aligned_cols=26 Identities=15% Similarity=0.280 Sum_probs=21.2
Q ss_pred CCCcCCCcHHHHHHHhhcCCChhhhHHH
Q 044164 10 PNFHDILPDAIMSNIFSLITDTRTRNAM 37 (714)
Q Consensus 10 ~~~~~~LPdeiL~~Ifs~L~~~~dl~~~ 37 (714)
..|.. ||.|+-..|+++| +..|+..+
T Consensus 70 ~~w~~-LP~EIk~~Il~~L-~~~dL~~l 95 (97)
T PF09372_consen 70 NYWNI-LPIEIKYKILEYL-SNKDLKKL 95 (97)
T ss_pred Cchhh-CCHHHHHHHHHcC-CHHHHHHH
Confidence 34666 9999999999999 77787643
Done!