Query 044164
Match_columns 714
No_of_seqs 550 out of 3066
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 21:03:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044164.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044164hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 1E-34 3.5E-39 334.0 27.0 480 11-590 5-519 (594)
2 3ogk_B Coronatine-insensitive 100.0 4.4E-34 1.5E-38 328.7 23.2 384 14-453 15-421 (592)
3 2p1m_B Transport inhibitor res 99.9 5.5E-26 1.9E-30 261.2 19.9 443 101-681 59-540 (594)
4 3ogk_B Coronatine-insensitive 99.9 4.9E-25 1.7E-29 253.2 20.6 443 100-680 65-546 (592)
5 2ast_B S-phase kinase-associat 99.9 6.1E-25 2.1E-29 234.0 18.9 287 9-415 6-299 (336)
6 3rgz_A Protein brassinosteroid 99.9 1.3E-26 4.5E-31 274.5 -4.8 82 573-682 628-714 (768)
7 3rgz_A Protein brassinosteroid 99.9 4.3E-26 1.5E-30 270.1 -4.8 381 157-667 174-561 (768)
8 3t6q_A CD180 antigen; protein- 99.9 2.9E-23 9.9E-28 239.3 0.6 420 105-613 54-509 (606)
9 1z7x_W Ribonuclease inhibitor; 99.8 1.2E-20 4E-25 209.8 18.9 290 109-446 4-320 (461)
10 3vq2_A TLR4, TOLL-like recepto 99.8 1.5E-22 5.2E-27 233.2 2.8 492 63-683 22-556 (606)
11 3vq2_A TLR4, TOLL-like recepto 99.8 8.1E-22 2.8E-26 227.2 6.7 465 68-658 52-554 (606)
12 3t6q_A CD180 antigen; protein- 99.8 6.7E-23 2.3E-27 236.2 -4.3 473 109-684 34-559 (606)
13 1z7x_W Ribonuclease inhibitor; 99.8 5.2E-19 1.8E-23 196.5 24.8 301 104-458 24-360 (461)
14 2z63_A TOLL-like receptor 4, v 99.8 3.9E-21 1.3E-25 219.6 1.2 110 105-230 49-160 (570)
15 1ziw_A TOLL-like receptor 3; i 99.8 7.8E-21 2.7E-25 222.0 2.6 235 385-684 381-621 (680)
16 4eco_A Uncharacterized protein 99.8 2.5E-21 8.7E-26 224.1 -6.2 35 108-142 81-116 (636)
17 1ziw_A TOLL-like receptor 3; i 99.8 1.7E-20 5.8E-25 219.1 0.4 506 63-683 15-547 (680)
18 2z81_A CD282 antigen, TOLL-lik 99.8 5.9E-20 2E-24 208.9 3.4 77 513-613 384-460 (549)
19 4eco_A Uncharacterized protein 99.8 1.5E-20 5.1E-25 217.7 -3.4 356 154-659 199-597 (636)
20 2z7x_B TOLL-like receptor 1, v 99.8 2.3E-19 7.9E-24 202.7 5.4 296 107-453 20-338 (520)
21 2z63_A TOLL-like receptor 4, v 99.8 1.2E-19 4E-24 207.3 2.3 106 514-657 419-526 (570)
22 2z81_A CD282 antigen, TOLL-lik 99.7 6.5E-19 2.2E-23 200.3 7.9 302 248-657 192-505 (549)
23 4ecn_A Leucine-rich repeat pro 99.7 7.8E-20 2.7E-24 216.3 -0.8 31 108-138 323-354 (876)
24 1o6v_A Internalin A; bacterial 99.7 6.5E-18 2.2E-22 188.2 14.0 339 107-613 45-384 (466)
25 3v47_A TOLL-like receptor 5B a 99.7 1.1E-18 3.9E-23 193.5 7.8 108 513-657 296-403 (455)
26 2z7x_B TOLL-like receptor 1, v 99.7 3.1E-18 1.1E-22 193.4 11.3 417 72-658 21-477 (520)
27 4ecn_A Leucine-rich repeat pro 99.7 7.1E-19 2.4E-23 208.1 5.1 354 155-659 442-837 (876)
28 1o6v_A Internalin A; bacterial 99.7 1.8E-17 6.3E-22 184.5 15.3 347 69-591 43-389 (466)
29 2ast_B S-phase kinase-associat 99.7 1.7E-17 5.9E-22 176.2 14.0 274 121-459 37-313 (336)
30 3v47_A TOLL-like receptor 5B a 99.7 1.3E-18 4.4E-23 193.1 4.8 362 131-642 30-414 (455)
31 3j0a_A TOLL-like receptor 5; m 99.7 6.3E-19 2.2E-23 210.7 1.7 487 63-658 15-556 (844)
32 3j0a_A TOLL-like receptor 5; m 99.7 3.9E-18 1.3E-22 203.9 7.9 79 514-613 478-556 (844)
33 3a79_B TLR6, VLRB.59, TOLL-lik 99.7 3.4E-18 1.2E-22 195.1 4.1 126 107-262 51-179 (562)
34 4fmz_A Internalin; leucine ric 99.7 1.2E-16 3.9E-21 170.7 15.0 209 158-446 41-250 (347)
35 4fmz_A Internalin; leucine ric 99.7 2.3E-16 7.7E-21 168.4 13.9 231 129-447 42-273 (347)
36 2ca6_A RAN GTPase-activating p 99.7 2E-15 6.8E-20 163.7 19.5 271 128-446 29-337 (386)
37 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 1.6E-16 5.3E-21 181.3 7.1 424 66-658 45-506 (562)
38 4g8a_A TOLL-like receptor 4; l 99.6 7.1E-17 2.4E-21 186.2 3.9 478 57-658 36-576 (635)
39 2id5_A Lingo-1, leucine rich r 99.6 8.9E-17 3E-21 179.5 1.7 297 190-613 32-329 (477)
40 3bz5_A Internalin-J, INLJ; leu 99.6 1.2E-15 4.2E-20 169.1 10.2 222 129-447 40-262 (457)
41 2ca6_A RAN GTPase-activating p 99.6 7.2E-14 2.5E-18 151.4 23.3 256 155-455 26-319 (386)
42 2id5_A Lingo-1, leucine rich r 99.6 1.2E-16 4.1E-21 178.4 0.2 303 160-591 31-334 (477)
43 3bz5_A Internalin-J, INLJ; leu 99.5 5.2E-15 1.8E-19 164.1 7.9 75 515-602 317-396 (457)
44 3o6n_A APL1; leucine-rich repe 99.5 2.1E-15 7.2E-20 163.7 2.6 35 160-200 44-79 (390)
45 3o6n_A APL1; leucine-rich repe 99.5 4.6E-15 1.6E-19 161.0 4.2 82 129-227 43-124 (390)
46 4fcg_A Uncharacterized protein 99.5 5.5E-15 1.9E-19 156.6 3.9 106 514-657 204-309 (328)
47 3goz_A Leucine-rich repeat-con 99.5 1.1E-12 3.7E-17 140.9 21.7 70 155-227 44-116 (362)
48 4g8a_A TOLL-like receptor 4; l 99.5 9.6E-16 3.3E-20 176.8 -2.9 129 514-682 443-577 (635)
49 1jl5_A Outer protein YOPM; leu 99.5 1.1E-14 3.9E-19 161.1 5.4 66 516-603 317-382 (454)
50 3oja_B Anopheles plasmodium-re 99.5 4.2E-15 1.4E-19 170.7 1.8 223 160-459 50-274 (597)
51 3oja_B Anopheles plasmodium-re 99.5 8.2E-15 2.8E-19 168.3 4.0 312 129-593 49-361 (597)
52 4fcg_A Uncharacterized protein 99.5 2E-14 6.9E-19 152.3 4.5 130 514-686 181-315 (328)
53 1ogq_A PGIP-2, polygalacturona 99.5 2.7E-15 9.2E-20 157.9 -2.4 251 301-658 50-300 (313)
54 1jl5_A Outer protein YOPM; leu 99.4 4.6E-16 1.6E-20 172.4 -9.6 69 516-613 297-366 (454)
55 3goz_A Leucine-rich repeat-con 99.4 2.2E-12 7.5E-17 138.5 18.7 254 153-445 14-287 (362)
56 1ogq_A PGIP-2, polygalacturona 99.4 5.9E-15 2E-19 155.3 -4.2 244 329-682 50-301 (313)
57 1xku_A Decorin; proteoglycan, 99.3 1.7E-12 5.9E-17 137.3 7.0 81 516-613 192-272 (330)
58 3e4g_A ATP synthase subunit S, 99.3 7.3E-12 2.5E-16 118.3 10.3 105 329-442 61-170 (176)
59 1xku_A Decorin; proteoglycan, 99.3 3.7E-12 1.3E-16 134.7 9.3 206 298-593 73-279 (330)
60 2z66_A Variable lymphocyte rec 99.3 2E-13 6.9E-18 142.8 -0.9 251 301-656 28-281 (306)
61 3zyj_A Leucine-rich repeat-con 99.3 3.8E-13 1.3E-17 148.4 1.3 129 301-446 64-192 (440)
62 3zyi_A Leucine-rich repeat-con 99.3 3.5E-13 1.2E-17 149.3 0.9 129 301-446 75-203 (452)
63 2z80_A TOLL-like receptor 2, v 99.3 8.1E-14 2.8E-18 149.1 -4.2 257 301-657 52-309 (353)
64 3o53_A Protein LRIM1, AGAP0063 99.3 5.7E-13 1.9E-17 140.3 1.2 246 291-657 24-270 (317)
65 2z80_A TOLL-like receptor 2, v 99.2 3.7E-13 1.3E-17 143.9 -1.6 253 328-682 51-311 (353)
66 1ozn_A Reticulon 4 receptor; N 99.2 9.2E-13 3.1E-17 136.4 -0.3 208 301-591 32-239 (285)
67 3rfs_A Internalin B, repeat mo 99.2 3E-12 1E-16 131.6 3.3 87 514-642 155-241 (272)
68 2ft3_A Biglycan; proteoglycan, 99.2 5.2E-12 1.8E-16 133.8 5.2 238 302-613 34-273 (332)
69 1ozn_A Reticulon 4 receptor; N 99.2 1.2E-12 4.2E-17 135.4 0.1 107 328-447 31-137 (285)
70 2ft3_A Biglycan; proteoglycan, 99.2 8E-13 2.7E-17 140.0 -1.4 254 298-659 75-330 (332)
71 3oja_A Leucine-rich immune mol 99.2 1.2E-12 4.1E-17 146.3 -0.9 240 297-657 30-270 (487)
72 2z66_A Variable lymphocyte rec 99.2 9.9E-13 3.4E-17 137.5 -2.2 228 328-659 27-258 (306)
73 3e4g_A ATP synthase subunit S, 99.2 2.7E-11 9.2E-16 114.4 7.4 105 301-416 61-171 (176)
74 3o53_A Protein LRIM1, AGAP0063 99.2 4.8E-12 1.6E-16 133.2 2.4 217 298-614 55-272 (317)
75 3zyj_A Leucine-rich repeat-con 99.2 3.9E-12 1.3E-16 140.3 0.5 227 279-591 67-293 (440)
76 3oja_A Leucine-rich immune mol 99.1 2E-12 6.8E-17 144.5 -2.4 238 325-680 30-270 (487)
77 3g06_A SSPH2 (leucine-rich rep 99.1 1.1E-11 3.7E-16 142.0 3.2 180 301-593 121-300 (622)
78 3zyi_A Leucine-rich repeat-con 99.1 5.3E-12 1.8E-16 139.7 -1.9 225 329-659 75-300 (452)
79 3un9_A NLR family member X1; l 99.1 6.9E-10 2.4E-14 119.2 13.9 151 220-409 101-262 (372)
80 3rfs_A Internalin B, repeat mo 99.0 4.9E-11 1.7E-15 122.5 3.2 208 299-604 39-246 (272)
81 4glp_A Monocyte differentiatio 99.0 2.3E-10 7.9E-15 119.8 7.3 225 288-591 76-308 (310)
82 1wwl_A Monocyte differentiatio 99.0 1.5E-10 5.1E-15 121.4 5.4 209 299-591 93-310 (312)
83 3g06_A SSPH2 (leucine-rich rep 99.0 1.3E-10 4.6E-15 132.9 4.3 113 300-450 80-192 (622)
84 4glp_A Monocyte differentiatio 99.0 3.2E-10 1.1E-14 118.7 7.0 181 299-551 115-302 (310)
85 3un9_A NLR family member X1; l 98.9 4.6E-09 1.6E-13 112.7 13.8 197 160-401 71-285 (372)
86 1wwl_A Monocyte differentiatio 98.9 3.4E-10 1.2E-14 118.7 3.5 204 327-613 93-305 (312)
87 1h6u_A Internalin H; cell adhe 98.9 2.8E-09 9.5E-14 111.5 9.5 192 300-591 40-231 (308)
88 1h6u_A Internalin H; cell adhe 98.9 1.3E-09 4.6E-14 113.9 6.8 188 327-613 39-226 (308)
89 1p9a_G Platelet glycoprotein I 98.8 8.2E-10 2.8E-14 114.5 2.9 82 326-423 7-88 (290)
90 2z62_A TOLL-like receptor 4, v 98.8 4.2E-10 1.4E-14 115.6 0.7 207 301-591 28-238 (276)
91 2o6q_A Variable lymphocyte rec 98.8 8.6E-10 2.9E-14 113.0 2.7 81 359-447 37-117 (270)
92 2z62_A TOLL-like receptor 4, v 98.8 3.4E-10 1.2E-14 116.3 -0.8 105 329-447 28-132 (276)
93 2ra8_A Uncharacterized protein 98.8 5.7E-08 1.9E-12 103.6 15.9 135 300-446 192-337 (362)
94 2o6q_A Variable lymphocyte rec 98.8 1.1E-09 3.7E-14 112.3 2.1 204 301-591 16-219 (270)
95 2xwt_C Thyrotropin receptor; s 98.8 1.2E-09 4E-14 109.8 1.1 83 359-447 31-113 (239)
96 1p9a_G Platelet glycoprotein I 98.8 5.2E-09 1.8E-13 108.4 5.6 202 299-591 8-209 (290)
97 2xwt_C Thyrotropin receptor; s 98.7 8.3E-10 2.8E-14 110.8 -1.2 104 329-446 31-137 (239)
98 2o6s_A Variable lymphocyte rec 98.6 7.9E-09 2.7E-13 101.2 3.1 86 515-642 99-184 (208)
99 3m19_A Variable lymphocyte rec 98.6 1.9E-08 6.4E-13 101.8 5.9 83 515-613 106-188 (251)
100 2ra8_A Uncharacterized protein 98.6 5.5E-08 1.9E-12 103.7 9.5 86 327-423 250-341 (362)
101 1h6t_A Internalin B; cell adhe 98.5 6.7E-08 2.3E-12 100.0 6.8 124 299-450 44-167 (291)
102 4ezg_A Putative uncharacterize 98.5 3.7E-08 1.3E-12 95.6 4.4 16 354-369 83-98 (197)
103 1h6t_A Internalin B; cell adhe 98.5 2E-07 6.7E-12 96.5 10.0 171 327-591 44-214 (291)
104 3m19_A Variable lymphocyte rec 98.5 2.9E-08 9.9E-13 100.3 2.9 161 358-592 34-194 (251)
105 4ezg_A Putative uncharacterize 98.5 8.5E-08 2.9E-12 93.0 5.8 57 384-450 43-99 (197)
106 1m9s_A Internalin B; cell inva 98.5 9E-08 3.1E-12 109.2 5.9 124 299-450 41-164 (605)
107 1io0_A Tropomodulin; LRR prote 98.5 1.1E-06 3.7E-11 84.4 12.4 126 291-423 26-162 (185)
108 1m9s_A Internalin B; cell inva 98.5 2.6E-07 9E-12 105.4 9.2 123 297-447 61-183 (605)
109 2o6s_A Variable lymphocyte rec 98.5 7.8E-08 2.7E-12 94.1 4.1 110 514-667 74-188 (208)
110 2je0_A Acidic leucine-rich nuc 98.4 1.2E-07 4E-12 87.5 3.8 132 300-446 16-147 (149)
111 1fs1_A SKP2 F-BOX, cyclin A/CD 98.4 1.4E-07 4.9E-12 70.3 3.5 38 10-49 7-44 (53)
112 2ell_A Acidic leucine-rich nuc 98.3 1.1E-07 3.6E-12 89.7 1.2 136 300-450 23-159 (168)
113 4ay9_X Follicle-stimulating ho 98.3 1.2E-08 3.9E-13 108.8 -6.3 205 298-587 51-256 (350)
114 2v70_A SLIT-2, SLIT homolog 2 98.3 6.6E-07 2.3E-11 88.4 6.7 110 513-659 54-163 (220)
115 3sb4_A Hypothetical leucine ri 98.3 1.6E-06 5.4E-11 91.2 9.2 78 515-610 249-327 (329)
116 2je0_A Acidic leucine-rich nuc 98.3 7.1E-07 2.4E-11 82.1 5.3 12 161-172 17-28 (149)
117 2v9t_B SLIT homolog 2 protein 98.2 8.9E-07 3E-11 87.5 6.2 109 514-659 54-162 (220)
118 1io0_A Tropomodulin; LRR prote 98.2 7.8E-06 2.7E-10 78.3 12.7 126 318-451 25-163 (185)
119 3cvr_A Invasion plasmid antige 98.2 1.2E-06 4.1E-11 99.0 7.9 189 300-603 58-253 (571)
120 3e6j_A Variable lymphocyte rec 98.2 1.1E-06 3.8E-11 87.3 6.3 109 513-659 61-169 (229)
121 4ay9_X Follicle-stimulating ho 98.2 9.8E-08 3.4E-12 101.5 -2.4 86 301-396 30-115 (350)
122 3sb4_A Hypothetical leucine ri 98.2 4.2E-06 1.4E-10 88.0 10.2 126 384-583 201-327 (329)
123 2v70_A SLIT-2, SLIT homolog 2 98.2 1E-06 3.6E-11 87.0 5.0 37 385-423 32-68 (220)
124 3cvr_A Invasion plasmid antige 98.2 1.3E-06 4.5E-11 98.6 6.2 197 328-650 58-255 (571)
125 2xot_A Amphoterin-induced prot 98.2 1.1E-06 3.9E-11 93.7 5.3 37 385-423 39-75 (361)
126 2v9t_B SLIT homolog 2 protein 98.1 1.9E-06 6.5E-11 85.0 5.2 135 385-591 32-166 (220)
127 1dce_A Protein (RAB geranylger 98.1 4.7E-08 1.6E-12 110.8 -7.8 108 412-593 441-549 (567)
128 3e6j_A Variable lymphocyte rec 98.1 4.1E-06 1.4E-10 83.2 6.4 36 385-423 40-75 (229)
129 1xeu_A Internalin C; cellular 98.0 7.7E-07 2.6E-11 90.5 0.5 161 302-551 20-180 (263)
130 4b8c_D Glucose-repressible alc 98.0 1.2E-06 4.1E-11 102.3 2.0 93 513-642 267-360 (727)
131 2ell_A Acidic leucine-rich nuc 97.9 6.1E-06 2.1E-10 77.4 5.0 84 513-613 46-129 (168)
132 1w8a_A SLIT protein; signaling 97.9 4.4E-06 1.5E-10 80.5 3.0 105 516-657 29-134 (192)
133 1a9n_A U2A', U2A'; complex (nu 97.9 2.9E-06 1E-10 80.4 1.1 132 299-447 17-148 (176)
134 1xeu_A Internalin C; cellular 97.9 1.1E-05 3.9E-10 81.8 5.6 163 359-613 19-181 (263)
135 4b8c_D Glucose-repressible alc 97.8 5.8E-06 2E-10 96.5 3.6 92 513-642 244-335 (727)
136 1w8a_A SLIT protein; signaling 97.8 1.4E-05 4.8E-10 76.9 5.7 97 513-644 51-147 (192)
137 2xot_A Amphoterin-induced prot 97.8 1.4E-05 4.7E-10 85.2 6.0 113 513-659 85-199 (361)
138 1dce_A Protein (RAB geranylger 97.8 5.9E-06 2E-10 93.5 2.5 121 516-678 441-566 (567)
139 1ds9_A Outer arm dynein; leuci 97.7 5.3E-06 1.8E-10 80.3 0.9 38 156-200 43-80 (198)
140 1ds9_A Outer arm dynein; leuci 97.7 2.5E-06 8.4E-11 82.6 -1.6 131 296-445 43-180 (198)
141 1pgv_A TMD-1, tropomodulin TMD 97.7 0.00022 7.5E-09 68.3 11.6 121 321-447 33-165 (197)
142 1pgv_A TMD-1, tropomodulin TMD 97.7 0.0003 1E-08 67.4 12.4 128 290-423 30-168 (197)
143 2o6r_A Variable lymphocyte rec 97.6 6E-05 2E-09 71.2 6.7 95 513-642 49-143 (177)
144 2o6r_A Variable lymphocyte rec 97.6 3.4E-05 1.2E-09 72.9 4.5 107 515-658 27-133 (177)
145 2wfh_A SLIT homolog 2 protein 97.6 2.6E-05 8.8E-10 75.2 3.3 107 515-659 30-136 (193)
146 1a9n_A U2A', U2A'; complex (nu 97.6 3E-05 1E-09 73.3 3.0 128 513-680 16-148 (176)
147 2e31_A FBS1, F-box only protei 97.4 5E-05 1.7E-09 77.3 2.6 37 11-49 50-87 (297)
148 2wfh_A SLIT homolog 2 protein 97.3 0.00029 1E-08 67.6 6.2 85 513-613 51-135 (193)
149 3l2o_B F-box only protein 4; s 97.3 7.9E-05 2.7E-09 75.0 2.1 37 12-50 5-41 (312)
150 3g39_A Variable lymphocyte rec 97.2 0.00017 6E-09 67.7 4.0 96 527-659 17-112 (170)
151 2r9u_A Variable lymphocyte rec 97.1 0.00024 8.4E-09 67.0 4.0 96 527-659 20-115 (174)
152 2ifg_A High affinity nerve gro 96.8 0.00035 1.2E-08 73.5 2.0 92 530-658 20-112 (347)
153 3v7d_B Cell division control p 96.6 0.00061 2.1E-08 74.3 2.0 38 11-50 14-51 (464)
154 3g39_A Variable lymphocyte rec 96.5 0.0026 8.8E-08 59.5 5.5 83 515-613 29-111 (170)
155 2r9u_A Variable lymphocyte rec 96.4 0.0033 1.1E-07 59.0 5.5 83 515-613 32-114 (174)
156 4fdw_A Leucine rich hypothetic 96.4 0.00093 3.2E-08 72.0 1.8 61 517-586 249-309 (401)
157 1p22_A F-BOX/WD-repeat protein 96.3 0.0013 4.6E-08 71.2 2.3 39 9-49 8-50 (435)
158 4fs7_A Uncharacterized protein 96.2 0.0023 7.9E-08 68.6 3.9 33 188-227 69-101 (394)
159 2ovr_B FBW7, F-BOX/WD repeat p 96.1 0.0022 7.6E-08 69.5 3.3 40 9-50 16-55 (445)
160 2ifg_A High affinity nerve gro 95.9 0.005 1.7E-07 64.6 4.6 84 513-613 28-112 (347)
161 4fs7_A Uncharacterized protein 95.9 0.00099 3.4E-08 71.6 -1.0 14 572-585 338-351 (394)
162 4fdw_A Leucine rich hypothetic 95.7 0.0046 1.6E-07 66.5 3.0 60 297-368 176-235 (401)
163 3rw6_A Nuclear RNA export fact 95.3 0.028 9.7E-07 56.5 7.1 39 298-338 167-205 (267)
164 3rw6_A Nuclear RNA export fact 94.0 0.068 2.3E-06 53.7 6.4 89 157-259 166-258 (267)
165 4gt6_A Cell surface protein; l 65.6 4.8 0.00016 42.4 4.6 121 515-679 264-385 (394)
166 4h09_A Hypothetical leucine ri 54.0 8.8 0.0003 39.9 4.1 60 514-588 238-297 (379)
167 2lz0_A Uncharacterized protein 48.0 14 0.00049 30.4 3.6 49 528-587 5-53 (100)
168 4gt6_A Cell surface protein; l 46.5 29 0.00099 36.2 6.7 60 514-588 309-368 (394)
169 3rfe_A Platelet glycoprotein I 34.7 21 0.00072 30.9 2.7 11 191-201 56-66 (130)
170 4h09_A Hypothetical leucine ri 25.1 47 0.0016 34.1 3.9 60 514-587 284-343 (379)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=1e-34 Score=334.01 Aligned_cols=480 Identities=18% Similarity=0.257 Sum_probs=313.6
Q ss_pred CCcCCCcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhHhccccEEEEecccc-cccccccccCcceeeeccccCCCC-CC
Q 044164 11 NFHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERSTRKSLALRGNIR-DLNQVPVCFQAINNLDLSCLSPWG-HP 88 (714)
Q Consensus 11 ~~~~~LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~~~~~~~L~l~~~~~-~l~~l~~~f~~L~~L~Ls~~~~~~-~~ 88 (714)
.+++ ||||||.+||+||+..+|+.++++|||+|+++....++.+.+..+.. ....+..+|+++++|+++...... ..
T Consensus 5 ~~~~-LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 83 (594)
T 2p1m_B 5 IALS-FPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFN 83 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGT
T ss_pred chhh-CCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcc
Confidence 3447 99999999999994499999999999999999888888888855432 223445678999999997532110 00
Q ss_pred ccccCCCchhHHHH---HhhhCCCeeEEEEeec--ChhhHHHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCC
Q 044164 89 LLESSSNPSLLAKL---LSHAFPSVVSLTIYAR--SPLTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSL 163 (714)
Q Consensus 89 ~l~~~~~~~l~~~~---L~~~~p~L~~L~l~~~--~~~~l~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L 163 (714)
..+. .....+..| +...+++|++|++++. ....+..+...+++|++|++.+|.... +..+..+..+|++|
T Consensus 84 l~~~-~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~----~~~l~~~~~~~~~L 158 (594)
T 2p1m_B 84 LVPD-GWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS----TDGLAAIAATCRNL 158 (594)
T ss_dssp CSCT-TSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE----HHHHHHHHHHCTTC
T ss_pred cccc-cccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC----HHHHHHHHHhCCCC
Confidence 0000 000111222 3467899999999864 445567776679999999999986443 56677888899999
Q ss_pred ceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccccccccCHH
Q 044164 164 SSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLGFVGDE 242 (714)
Q Consensus 164 ~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~ 242 (714)
++|+|++|... +..+..+..++..+++|++|++++|. ..++...+..+..++++|++|++ +|. .+ .
T Consensus 159 ~~L~L~~~~i~-~~~~~~l~~~~~~~~~L~~L~l~~~~---~~~~~~~l~~l~~~~~~L~~L~L~~~~-------~~--~ 225 (594)
T 2p1m_B 159 KELDLRESDVD-DVSGHWLSHFPDTYTSLVSLNISCLA---SEVSFSALERLVTRCPNLKSLKLNRAV-------PL--E 225 (594)
T ss_dssp CEEECTTCEEE-CCCGGGGGGSCTTCCCCCEEECTTCC---SCCCHHHHHHHHHHCTTCCEEECCTTS-------CH--H
T ss_pred CEEeCcCCccC-CcchHHHHHHhhcCCcCcEEEecccC---CcCCHHHHHHHHHhCCCCcEEecCCCC-------cH--H
Confidence 99999999843 33344455566677899999999732 35778899999999999999999 553 23 2
Q ss_pred HHHHHHhhCCCCceEEeccccC-cCC-----C--CCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCc
Q 044164 243 TLLSIASNCPRLSLLHLADSTA-LSS-----N--SSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNV 314 (714)
Q Consensus 243 ~l~~l~~~~~~L~~L~L~~c~~-l~~-----~--~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l 314 (714)
.+..+...+++|++|++..|.. +.. . .+...+ .+..+. ....++...+..+...+++|++|++++|. +
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~--~L~~Ls-~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l 301 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCK--ELRCLS-GFWDAVPAYLPAVYSVCSRLTTLNLSYAT-V 301 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCT--TCCEEE-CCBTCCGGGGGGGHHHHTTCCEEECTTCC-C
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCC--Cccccc-CCcccchhhHHHHHHhhCCCCEEEccCCC-C
Confidence 3677778999999999765531 000 0 000000 000000 00123344455555567888888888886 5
Q ss_pred CCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHh-cCCcCcceeee--------ecCCCCCHHHHHHHHhcCC
Q 044164 315 RDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGV-ALWKGLESLSI--------KNSADLTDSALIAISLGCS 385 (714)
Q Consensus 315 ~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l-~~~~~L~~L~L--------~~c~~ltd~~l~~l~~~~~ 385 (714)
++ ..+..+...+++|++|++.++ +++.+ +..+ ..|++|++|+| ..|..+++.++..++.+|+
T Consensus 302 ~~--~~l~~~~~~~~~L~~L~l~~~------~~~~~-l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~ 372 (594)
T 2p1m_B 302 QS--YDLVKLLCQCPKLQRLWVLDY------IEDAG-LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCP 372 (594)
T ss_dssp CH--HHHHHHHTTCTTCCEEEEEGG------GHHHH-HHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCT
T ss_pred CH--HHHHHHHhcCCCcCEEeCcCc------cCHHH-HHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhch
Confidence 43 336666678888888888773 22222 2222 35888888888 3456788888888887788
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEee-----CCCCCCc---hhHHHHHHhcCCCCCEEEEecccccccccc
Q 044164 386 NLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRIS-----SCKYLNT---VCSLQALEPIRDRIQRLHVDCVWESVEQYS 457 (714)
Q Consensus 386 ~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~-----~C~~l~~---~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~ 457 (714)
+|+.|.+ +|..+++.++..++..+ ++|+.|+++ +|..+.. +..+..+...+++|++|+++. .++..++.
T Consensus 373 ~L~~L~~-~~~~l~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 373 KLESVLY-FCRQMTNAALITIARNR-PNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp TCCEEEE-EESCCCHHHHHHHHHHC-TTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred hHHHHHH-hcCCcCHHHHHHHHhhC-CCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 8888855 45558888888888777 888888888 5667621 456666777788888888832 44443333
Q ss_pred hhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhccccccccccc
Q 044164 458 QDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLA 537 (714)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~ 537 (714)
.+. ..+++|+.|++. ...++.....
T Consensus 450 ~l~----------------------------------------------------~~~~~L~~L~L~---~~~i~~~~~~ 474 (594)
T 2p1m_B 450 YIG----------------------------------------------------TYAKKMEMLSVA---FAGDSDLGMH 474 (594)
T ss_dssp HHH----------------------------------------------------HHCTTCCEEEEE---SCCSSHHHHH
T ss_pred HHH----------------------------------------------------HhchhccEeecc---CCCCcHHHHH
Confidence 330 125678888773 2222222111
Q ss_pred CC-CCCCCcceEEEEEeccccCCCCccccccccccc-ccCCccccccccccCccc
Q 044164 538 GL-ENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNS-LVNYPQLSRMHFDCGDAI 590 (714)
Q Consensus 538 ~l-~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~-l~~~~~L~~~~l~~~~~~ 590 (714)
.+ .+|++|+.|.|+ +|... ..|+.. +..+++|+.++|+.|..+
T Consensus 475 ~l~~~~~~L~~L~L~---~n~~~-------~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 475 HVLSGCDSLRKLEIR---DCPFG-------DKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHHHHCTTCCEEEEE---SCSCC-------HHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred HHHhcCCCcCEEECc---CCCCc-------HHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 12 458889999985 34321 122222 345788899999888763
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=4.4e-34 Score=328.73 Aligned_cols=384 Identities=16% Similarity=0.181 Sum_probs=269.1
Q ss_pred CCCcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhHhccccEEEEecccc-cccccccccCcceeeeccccCCCC-CCccc
Q 044164 14 DILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERSTRKSLALRGNIR-DLNQVPVCFQAINNLDLSCLSPWG-HPLLE 91 (714)
Q Consensus 14 ~~LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~~~~~~~L~l~~~~~-~l~~l~~~f~~L~~L~Ls~~~~~~-~~~l~ 91 (714)
+ ||||+|.+||+||++.+++.++++|||+|+.+....++.+.+..... ....+..+|+++++|+++...... ...++
T Consensus 15 ~-LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 93 (592)
T 3ogk_B 15 A-TVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIP 93 (592)
T ss_dssp C-CGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSC
T ss_pred C-CCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhccccc
Confidence 6 99999999999997799999999999999999888888888754322 334455678899999996532100 00010
Q ss_pred cCCCchhHHHH---HhhhCCCeeEEEEeec--ChhhHHHHcccCCC-CCEEEEecccccCCCCChHHHHHHHhcCCCCce
Q 044164 92 SSSNPSLLAKL---LSHAFPSVVSLTIYAR--SPLTLHFLAPEWPK-LSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSS 165 (714)
Q Consensus 92 ~~~~~~l~~~~---L~~~~p~L~~L~l~~~--~~~~l~~l~~~~p~-L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~ 165 (714)
. ....+...| +...+++|++|++++. ....+..+...+++ |++|++.+|... +...+..+..+|++|++
T Consensus 94 ~-~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~----~~~~l~~~~~~~~~L~~ 168 (592)
T 3ogk_B 94 E-NWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF----TTDGLLSIVTHCRKIKT 168 (592)
T ss_dssp T-TSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEE----EHHHHHHHHHHCTTCSE
T ss_pred c-cccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCc----CHHHHHHHHhhCCCCCE
Confidence 0 111112223 3357899999999864 33455666555676 999999988643 25667777888999999
Q ss_pred EEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccccccccCHHHH
Q 044164 166 IDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLGFVGDETL 244 (714)
Q Consensus 166 L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~~l 244 (714)
|+|++|...+.. ...+..++..+++|++|++++| .+.+++...+..+..+|++|++|++ +|. +. .+
T Consensus 169 L~L~~~~~~~~~-~~~l~~~~~~~~~L~~L~L~~n--~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--------~~--~l 235 (592)
T 3ogk_B 169 LLMEESSFSEKD-GKWLHELAQHNTSLEVLNFYMT--EFAKISPKDLETIARNCRSLVSVKVGDFE--------IL--EL 235 (592)
T ss_dssp EECTTCEEECCC-SHHHHHHHHHCCCCCEEECTTC--CCSSCCHHHHHHHHHHCTTCCEEECSSCB--------GG--GG
T ss_pred EECccccccCcc-hhHHHHHHhcCCCccEEEeecc--CCCccCHHHHHHHHhhCCCCcEEeccCcc--------HH--HH
Confidence 999998753332 1223334444569999999874 3455677888888899999999999 654 22 23
Q ss_pred HHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChHHHHHH
Q 044164 245 LSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELL 324 (714)
Q Consensus 245 ~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l 324 (714)
......+++|++|.+.++...... . ........+++|+.|+++++. ... +..+
T Consensus 236 ~~~~~~~~~L~~L~l~~~~~~~~~--~--------------------~~~~~l~~~~~L~~L~l~~~~---~~~--l~~~ 288 (592)
T 3ogk_B 236 VGFFKAAANLEEFCGGSLNEDIGM--P--------------------EKYMNLVFPRKLCRLGLSYMG---PNE--MPIL 288 (592)
T ss_dssp HHHHHHCTTCCEEEECBCCCCTTC--T--------------------TSSSCCCCCTTCCEEEETTCC---TTT--GGGG
T ss_pred HHHHhhhhHHHhhcccccccccch--H--------------------HHHHHhhccccccccCccccc---hhH--HHHH
Confidence 345567899999999754221000 0 000112356889999887643 221 3445
Q ss_pred hccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeC----------
Q 044164 325 NSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQG---------- 394 (714)
Q Consensus 325 ~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~---------- 394 (714)
...+++|++|++.+ |. +++......+..|++|+.|++.+ .+++.++..++..|++|++|+|.+
T Consensus 289 ~~~~~~L~~L~Ls~----~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~ 361 (592)
T 3ogk_B 289 FPFAAQIRKLDLLY----AL-LETEDHCTLIQKCPNLEVLETRN--VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDE 361 (592)
T ss_dssp GGGGGGCCEEEETT----CC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSST
T ss_pred HhhcCCCcEEecCC----Cc-CCHHHHHHHHHhCcCCCEEeccC--ccCHHHHHHHHHhCCCCCEEEeecCccccccccc
Confidence 67788999999988 33 44443234467899999999984 367888888888899999999995
Q ss_pred CCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEe----cccccc
Q 044164 395 CNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVD----CVWESV 453 (714)
Q Consensus 395 c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~----C~~~~~ 453 (714)
|..+++.++..++..| ++|++|++ +|..+ ++..+..+...+++|++|++. |+.++.
T Consensus 362 ~~~~~~~~~~~l~~~~-~~L~~L~l-~~~~l-~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~ 421 (592)
T 3ogk_B 362 EGLVSQRGLIALAQGC-QELEYMAV-YVSDI-TNESLESIGTYLKNLCDFRLVLLDREERITD 421 (592)
T ss_dssp TCCCCHHHHHHHHHHC-TTCSEEEE-EESCC-CHHHHHHHHHHCCSCCEEEEEECSCCSCCSS
T ss_pred cCccCHHHHHHHHhhC-ccCeEEEe-ecCCc-cHHHHHHHHhhCCCCcEEEEeecCCCccccC
Confidence 8889999999888888 99999999 45556 577788888878999999993 555443
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=5.5e-26 Score=261.16 Aligned_cols=443 Identities=16% Similarity=0.193 Sum_probs=271.5
Q ss_pred HHHhhhCCCeeEEEEeecChh----------------hHHHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCc
Q 044164 101 KLLSHAFPSVVSLTIYARSPL----------------TLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLS 164 (714)
Q Consensus 101 ~~L~~~~p~L~~L~l~~~~~~----------------~l~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~ 164 (714)
..+..+|++|++|.++++... .+..+...+++|++|++.++. + ++..+..+...|++|+
T Consensus 59 ~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~----~~~~~~~l~~~~~~L~ 133 (594)
T 2p1m_B 59 ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-V----TDDCLELIAKSFKNFK 133 (594)
T ss_dssp HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-C----CHHHHHHHHHHCTTCC
T ss_pred HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-E----cHHHHHHHHHhCCCCc
Confidence 344578899999998865321 134455677888888888764 1 2455555555678888
Q ss_pred eEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccccccccCHHH
Q 044164 165 SIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLGFVGDET 243 (714)
Q Consensus 165 ~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~~ 243 (714)
+|+|++|...++.. +..+...|++|++|++++|.. .+.....+..+...+++|++|++ .|. ..+++..
T Consensus 134 ~L~L~~~~~~~~~~---l~~~~~~~~~L~~L~L~~~~i--~~~~~~~l~~~~~~~~~L~~L~l~~~~------~~~~~~~ 202 (594)
T 2p1m_B 134 VLVLSSCEGFSTDG---LAAIAATCRNLKELDLRESDV--DDVSGHWLSHFPDTYTSLVSLNISCLA------SEVSFSA 202 (594)
T ss_dssp EEEEESCEEEEHHH---HHHHHHHCTTCCEEECTTCEE--ECCCGGGGGGSCTTCCCCCEEECTTCC------SCCCHHH
T ss_pred EEeCCCcCCCCHHH---HHHHHHhCCCCCEEeCcCCcc--CCcchHHHHHHhhcCCcCcEEEecccC------CcCCHHH
Confidence 88888774333221 112222345888888886421 22223334455556778888888 332 1466677
Q ss_pred HHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccC-cCCC-hHHH
Q 044164 244 LLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNN-VRDT-WPAL 321 (714)
Q Consensus 244 l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~-l~~~-~~~l 321 (714)
+..+..++++|++|++.+|.. ..++..++..+++|++|+++.|.. +... -..+
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~-------------------------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVP-------------------------LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSC-------------------------HHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred HHHHHHhCCCCcEEecCCCCc-------------------------HHHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 777777788888888876621 233666777788888888776642 1100 0012
Q ss_pred HHHhccCCCccEE-EeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCH
Q 044164 322 ELLNSKCPRLKSL-KLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITK 400 (714)
Q Consensus 322 ~~l~~~~~~L~~L-~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~ 400 (714)
.....+|++|+.| .+.+ .........+..+++|++|++++|. +++.++..+...|++|+.|++.+| +++
T Consensus 258 ~~~l~~~~~L~~Ls~~~~-------~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~ 327 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWD-------AVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IED 327 (594)
T ss_dssp HHHHHTCTTCCEEECCBT-------CCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHH
T ss_pred HHHHhcCCCcccccCCcc-------cchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCH
Confidence 2234677888877 3322 1111111233468999999999998 999998888888999999999998 778
Q ss_pred HHHHHHHHHcCCCeeEEEee--------CCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccc
Q 044164 401 MGMQIFARVLEKTLVDVRIS--------SCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHE 472 (714)
Q Consensus 401 ~~l~~l~~~~~~~L~~L~L~--------~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~ 472 (714)
.++..++..+ ++|++|+|+ .|..+ ++..+..+...+++|++|.++|+.++......+.
T Consensus 328 ~~l~~l~~~~-~~L~~L~L~~~~~~g~~~~~~l-~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~------------ 393 (594)
T 2p1m_B 328 AGLEVLASTC-KDLRELRVFPSEPFVMEPNVAL-TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA------------ 393 (594)
T ss_dssp HHHHHHHHHC-TTCCEEEEECSCTTCSSCSSCC-CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH------------
T ss_pred HHHHHHHHhC-CCCCEEEEecCcccccccCCCC-CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH------------
Confidence 8999998888 999999994 45566 5677888887789999997788887665554440
Q ss_pred cCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhc---ccccccccc-----cCCCCCCC
Q 044164 473 ACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAV---GELLNPIRL-----AGLENCPI 544 (714)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---~~~l~~l~~-----~~l~~~~~ 544 (714)
..+++|+.|.+.+.. ...++..+. .-+.+|++
T Consensus 394 ----------------------------------------~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 433 (594)
T 2p1m_B 394 ----------------------------------------RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433 (594)
T ss_dssp ----------------------------------------HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred ----------------------------------------hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence 235677777764211 122331110 00456788
Q ss_pred cceEEEEEeccccCCCCcccccccccccccC-CccccccccccCccccccccCCCCCccchhhHHhhhccccccccccCC
Q 044164 545 LEEIQIKVVGDCRNQQKPVFMAEFGLNSLVN-YPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELN 623 (714)
Q Consensus 545 L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~-~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~ 623 (714)
|+.|.+. + . ....++..++. +++|+.++|++|.+++..+.+ -...++.++.+++.+
T Consensus 434 L~~L~L~--~-~--------l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~--l~~~~~~L~~L~L~~---------- 490 (594)
T 2p1m_B 434 LRRLSLS--G-L--------LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH--VLSGCDSLRKLEIRD---------- 490 (594)
T ss_dssp CCEEECC--S-S--------CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHH--HHHHCTTCCEEEEES----------
T ss_pred ccEEeec--C-c--------ccHHHHHHHHHhchhccEeeccCCCCcHHHHHH--HHhcCCCcCEEECcC----------
Confidence 8888883 2 1 11223334444 778888888888765543211 001234444455544
Q ss_pred CCCCCCccccccccCcchhhhHHHhhhhhheeeccc--hhHHHHHHHhcCCCcccccccc
Q 044164 624 YWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGT--ANEHFMSFFLKIPTLRDVQLRE 681 (714)
Q Consensus 624 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~~~~~~~~~~l~~~~~~~ 681 (714)
|..+..-+. .+...|++|++|+|.|. .++.+..+..++|+|....+++
T Consensus 491 ---------n~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~ 540 (594)
T 2p1m_B 491 ---------CPFGDKALL-ANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE 540 (594)
T ss_dssp ---------CSCCHHHHH-HTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred ---------CCCcHHHHH-HHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence 555222221 23456888888888843 3333444444568875544443
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=4.9e-25 Score=253.20 Aligned_cols=443 Identities=17% Similarity=0.142 Sum_probs=295.5
Q ss_pred HHHHhhhCCCeeEEEEeecCh----------------hhHHHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCC-
Q 044164 100 AKLLSHAFPSVVSLTIYARSP----------------LTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPS- 162 (714)
Q Consensus 100 ~~~L~~~~p~L~~L~l~~~~~----------------~~l~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~- 162 (714)
+..+..++++|++|+++++.. ..+..+...+++|++|++.++. + ++..+..+...+++
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i----~~~~~~~l~~~~~~~ 139 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-V----SDLDLDRLAKARADD 139 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-C----CHHHHHHHHHHHGGG
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-e----cHHHHHHHHHhcccc
Confidence 334558999999999976432 2356666789999999999883 2 24455555555666
Q ss_pred CceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccccccccCH
Q 044164 163 LSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLGFVGD 241 (714)
Q Consensus 163 L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~ 241 (714)
|++|+|++|.... ...+..+...|++|++|++++|.. .+.....+..+...+++|++|++ .+. ...+++
T Consensus 140 L~~L~L~~~~~~~---~~~l~~~~~~~~~L~~L~L~~~~~--~~~~~~~l~~~~~~~~~L~~L~L~~n~-----~~~~~~ 209 (592)
T 3ogk_B 140 LETLKLDKCSGFT---TDGLLSIVTHCRKIKTLLMEESSF--SEKDGKWLHELAQHNTSLEVLNFYMTE-----FAKISP 209 (592)
T ss_dssp CCEEEEESCEEEE---HHHHHHHHHHCTTCSEEECTTCEE--ECCCSHHHHHHHHHCCCCCEEECTTCC-----CSSCCH
T ss_pred CcEEECcCCCCcC---HHHHHHHHhhCCCCCEEECccccc--cCcchhHHHHHHhcCCCccEEEeeccC-----CCccCH
Confidence 9999999987322 222333333466999999998532 22334457788889999999999 433 113457
Q ss_pred HHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChHHH
Q 044164 242 ETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPAL 321 (714)
Q Consensus 242 ~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l 321 (714)
..+..+..+|++|++|++.+|. + .++...+..+++|++|+++.+........ .
T Consensus 210 ~~l~~~~~~~~~L~~L~L~~~~-~-------------------------~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-~ 262 (592)
T 3ogk_B 210 KDLETIARNCRSLVSVKVGDFE-I-------------------------LELVGFFKAAANLEEFCGGSLNEDIGMPE-K 262 (592)
T ss_dssp HHHHHHHHHCTTCCEEECSSCB-G-------------------------GGGHHHHHHCTTCCEEEECBCCCCTTCTT-S
T ss_pred HHHHHHHhhCCCCcEEeccCcc-H-------------------------HHHHHHHhhhhHHHhhcccccccccchHH-H
Confidence 7888888899999999998763 1 22446677899999999986433211111 1
Q ss_pred HHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHH
Q 044164 322 ELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKM 401 (714)
Q Consensus 322 ~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~ 401 (714)
......+++|+.|.+.+... ... ...+..+++|++|++++|. +++.++..+...|++|+.|++.+ .+++.
T Consensus 263 ~~~l~~~~~L~~L~l~~~~~-----~~l--~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~--~~~~~ 332 (592)
T 3ogk_B 263 YMNLVFPRKLCRLGLSYMGP-----NEM--PILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRN--VIGDR 332 (592)
T ss_dssp SSCCCCCTTCCEEEETTCCT-----TTG--GGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEG--GGHHH
T ss_pred HHHhhccccccccCccccch-----hHH--HHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccC--ccCHH
Confidence 12236788999999976311 111 2356788999999999998 99999888888899999999983 47899
Q ss_pred HHHHHHHHcCCCeeEEEeeC----------CCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCcc
Q 044164 402 GMQIFARVLEKTLVDVRISS----------CKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSH 471 (714)
Q Consensus 402 ~l~~l~~~~~~~L~~L~L~~----------C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~ 471 (714)
++..++..| ++|++|++++ |..+ ++..+..+...+++|++|+++|..++...+..+.
T Consensus 333 ~l~~~~~~~-~~L~~L~L~~g~~~~~~~~~~~~~-~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~----------- 399 (592)
T 3ogk_B 333 GLEVLAQYC-KQLKRLRIERGADEQGMEDEEGLV-SQRGLIALAQGCQELEYMAVYVSDITNESLESIG----------- 399 (592)
T ss_dssp HHHHHHHHC-TTCCEEEEECCCCSSTTSSTTCCC-CHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH-----------
T ss_pred HHHHHHHhC-CCCCEEEeecCccccccccccCcc-CHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH-----------
Confidence 999999999 9999999996 8888 6777888888899999999999988877666650
Q ss_pred ccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhc-ccccccc------cccCCCCCCC
Q 044164 472 EACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAV-GELLNPI------RLAGLENCPI 544 (714)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~l~~l------~~~~l~~~~~ 544 (714)
..+++|+.|.+.... .+.++.. +.. +.+|++
T Consensus 400 -----------------------------------------~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~-~~~~~~ 437 (592)
T 3ogk_B 400 -----------------------------------------TYLKNLCDFRLVLLDREERITDLPLDNGVRSL-LIGCKK 437 (592)
T ss_dssp -----------------------------------------HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH-HHHCTT
T ss_pred -----------------------------------------hhCCCCcEEEEeecCCCccccCchHHHHHHHH-HHhCCC
Confidence 235677777764211 2233321 111 445888
Q ss_pred cceEEEEEeccccCCCCccccccccccccc-CCccccccccccCccccccccCCCCCccchhhHHhhhccccccccccCC
Q 044164 545 LEEIQIKVVGDCRNQQKPVFMAEFGLNSLV-NYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELN 623 (714)
Q Consensus 545 L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~-~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~ 623 (714)
|+.|.++. |.+. ....++..+. .+|+|+.++|++|.+++..+ |.....++.++.+++.+
T Consensus 438 L~~L~L~~---~~~~-----l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~--~~~~~~~~~L~~L~l~~---------- 497 (592)
T 3ogk_B 438 LRRFAFYL---RQGG-----LTDLGLSYIGQYSPNVRWMLLGYVGESDEGL--MEFSRGCPNLQKLEMRG---------- 497 (592)
T ss_dssp CCEEEEEC---CGGG-----CCHHHHHHHHHSCTTCCEEEECSCCSSHHHH--HHHHTCCTTCCEEEEES----------
T ss_pred CCEEEEec---CCCC-----ccHHHHHHHHHhCccceEeeccCCCCCHHHH--HHHHhcCcccCeeeccC----------
Confidence 88888853 3321 1112222333 47888888888887766432 22223345556666655
Q ss_pred CCCCCCccccccccC-cchhhhHHHhhhhhheeeccch--hHHHHHHHhcCCCccccccc
Q 044164 624 YWPPQDMDVHQRSLS-LPAAGLLSQCRSLRKLFIHGTA--NEHFMSFFLKIPTLRDVQLR 680 (714)
Q Consensus 624 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~--~~~~~~~~~~~~~l~~~~~~ 680 (714)
|.++.. +++. .++|++|++|+++|.- .+.+..+.-.+|.|+...+.
T Consensus 498 ---------n~l~~~~~~~~--~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~ 546 (592)
T 3ogk_B 498 ---------CCFSERAIAAA--VTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP 546 (592)
T ss_dssp ---------CCCBHHHHHHH--HHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred ---------CCCcHHHHHHH--HHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence 665432 3332 5678888888888432 11122233344665554443
No 5
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=6.1e-25 Score=233.98 Aligned_cols=287 Identities=18% Similarity=0.242 Sum_probs=149.2
Q ss_pred CCCCcCCCcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhHh--ccccEEEEecccccccccccccCcceeeeccccCCCC
Q 044164 9 VPNFHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLER--STRKSLALRGNIRDLNQVPVCFQAINNLDLSCLSPWG 86 (714)
Q Consensus 9 ~~~~~~~LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~~--~~~~~L~l~~~~~~l~~l~~~f~~L~~L~Ls~~~~~~ 86 (714)
.+.|.+ ||+|++.+||+|| +.+++.++++|||+|+.+.. ..|+. ++++...-
T Consensus 6 ~~~~~~-LP~eil~~If~~L-~~~d~~~~~~vc~~W~~~~~~~~~~~~----------------------l~l~~~~~-- 59 (336)
T 2ast_B 6 GVSWDS-LPDELLLGIFSCL-CLPELLKVSGVCKRWYRLASDESLWQT----------------------LDLTGKNL-- 59 (336)
T ss_dssp -CCSSS-SCHHHHHHHHTTS-CHHHHHHTTSSCHHHHHHHTCSTTSSE----------------------EECTTCBC--
T ss_pred cCChhh-CCHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhcCchhhee----------------------eccccccC--
Confidence 356778 9999999999999 88999999999999999753 22333 33331110
Q ss_pred CCccccCCCchhHHHHHhhhC--CCeeEEEEeecChhhHHHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCc
Q 044164 87 HPLLESSSNPSLLAKLLSHAF--PSVVSLTIYARSPLTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLS 164 (714)
Q Consensus 87 ~~~l~~~~~~~l~~~~L~~~~--p~L~~L~l~~~~~~~l~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~ 164 (714)
. +..+ ..+ ++++.|.+.+........-...+++|++|++.++. + ++..+...+..+++|+
T Consensus 60 -------~-----~~~~-~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~-l----~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 60 -------H-----PDVT-GRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-I----EVSTLHGILSQCSKLQ 121 (336)
T ss_dssp -------C-----HHHH-HHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCE-E----CHHHHHHHHTTBCCCS
T ss_pred -------C-----HHHH-HhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCC-c----CHHHHHHHHhhCCCCC
Confidence 0 1111 112 45555555321100000001123444444444432 1 1222333444444444
Q ss_pred eEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccccccccCHHH
Q 044164 165 SIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLGFVGDET 243 (714)
Q Consensus 165 ~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~~ 243 (714)
+|+|+++. +++..... +..+++|++|++ +|. .+++..
T Consensus 122 ~L~L~~~~----------------------------------l~~~~~~~-l~~~~~L~~L~L~~~~-------~l~~~~ 159 (336)
T 2ast_B 122 NLSLEGLR----------------------------------LSDPIVNT-LAKNSNLVRLNLSGCS-------GFSEFA 159 (336)
T ss_dssp EEECTTCB----------------------------------CCHHHHHH-HTTCTTCSEEECTTCB-------SCCHHH
T ss_pred EEeCcCcc----------------------------------cCHHHHHH-HhcCCCCCEEECCCCC-------CCCHHH
Confidence 44444443 33322222 223555555555 432 344444
Q ss_pred HHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCC-cccceeccccc-CcCCChHHH
Q 044164 244 LLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLP-LLEELVLDVGN-NVRDTWPAL 321 (714)
Q Consensus 244 l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p-~L~~L~L~~c~-~l~~~~~~l 321 (714)
+..+...+++|++|++++|. .+++.++...+..++ +|++|++++|. .+++. .+
T Consensus 160 l~~~~~~~~~L~~L~l~~~~-----------------------~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~--~l 214 (336)
T 2ast_B 160 LQTLLSSCSRLDELNLSWCF-----------------------DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS--DL 214 (336)
T ss_dssp HHHHHHHCTTCCEEECCCCT-----------------------TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH--HH
T ss_pred HHHHHhcCCCCCEEcCCCCC-----------------------CcChHHHHHHHHhcccCCCEEEeCCCcccCCHH--HH
Confidence 44444555555555555441 234444455555555 66666666553 23222 23
Q ss_pred HHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHH
Q 044164 322 ELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKM 401 (714)
Q Consensus 322 ~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~ 401 (714)
......+++|++|++++ |..+++.. ...++.+++|+.|++++|..+++.++..+.. +++|+.|++++| +++.
T Consensus 215 ~~~~~~~~~L~~L~l~~----~~~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~--i~~~ 286 (336)
T 2ast_B 215 STLVRRCPNLVHLDLSD----SVMLKNDC-FQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI--VPDG 286 (336)
T ss_dssp HHHHHHCTTCSEEECTT----CTTCCGGG-GGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTS--SCTT
T ss_pred HHHHhhCCCCCEEeCCC----CCcCCHHH-HHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc-CCCCCEEeccCc--cCHH
Confidence 34445566666666665 22233322 2355566777777777776666665544433 777777777777 6776
Q ss_pred HHHHHHHHcCCCee
Q 044164 402 GMQIFARVLEKTLV 415 (714)
Q Consensus 402 ~l~~l~~~~~~~L~ 415 (714)
++..+...+ +.|+
T Consensus 287 ~~~~l~~~l-~~L~ 299 (336)
T 2ast_B 287 TLQLLKEAL-PHLQ 299 (336)
T ss_dssp CHHHHHHHS-TTSE
T ss_pred HHHHHHhhC-cceE
Confidence 666666544 5544
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=1.3e-26 Score=274.47 Aligned_cols=82 Identities=16% Similarity=0.264 Sum_probs=67.9
Q ss_pred ccCCccccccccccCccccccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhh
Q 044164 573 LVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLR 652 (714)
Q Consensus 573 l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 652 (714)
+..++.|+.++|+.|.++|.+ |..++.|+.++.++|.+ |+++|.+|++ ++++++|+
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~i---p~~l~~l~~L~~L~Ls~-------------------N~l~g~ip~~--l~~L~~L~ 683 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYI---PKEIGSMPYLFILNLGH-------------------NDISGSIPDE--VGDLRGLN 683 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCC---CGGGGGCTTCCEEECCS-------------------SCCCSCCCGG--GGGCTTCC
T ss_pred hhccccccEEECcCCcccccC---CHHHhccccCCEEeCcC-------------------CccCCCCChH--HhCCCCCC
Confidence 455778888999999999887 88888888888888888 8888888888 88888888
Q ss_pred heeec-----cchhHHHHHHHhcCCCccccccccc
Q 044164 653 KLFIH-----GTANEHFMSFFLKIPTLRDVQLRED 682 (714)
Q Consensus 653 ~l~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~ 682 (714)
.|+++ |.+|+.|..+ ++|+.+.++..
T Consensus 684 ~LdLs~N~l~g~ip~~l~~l----~~L~~L~ls~N 714 (768)
T 3rgz_A 684 ILDLSSNKLDGRIPQAMSAL----TMLTEIDLSNN 714 (768)
T ss_dssp EEECCSSCCEECCCGGGGGC----CCCSEEECCSS
T ss_pred EEECCCCcccCcCChHHhCC----CCCCEEECcCC
Confidence 88887 7888888777 78888877654
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=4.3e-26 Score=270.06 Aligned_cols=381 Identities=18% Similarity=0.192 Sum_probs=212.8
Q ss_pred HhcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeeccccc
Q 044164 157 FEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRF 235 (714)
Q Consensus 157 ~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~ 235 (714)
+.++++|++|+++++.... ..+. . .+++|++|++++|.. ...+ +. +.++++|++|++ +|.
T Consensus 174 ~~~l~~L~~L~Ls~n~l~~-~~~~--~----~l~~L~~L~Ls~n~l-~~~~-----~~-l~~l~~L~~L~Ls~n~----- 234 (768)
T 3rgz_A 174 SDGCGELKHLAISGNKISG-DVDV--S----RCVNLEFLDVSSNNF-STGI-----PF-LGDCSALQHLDISGNK----- 234 (768)
T ss_dssp TTCCTTCCEEECCSSEEES-CCBC--T----TCTTCCEEECCSSCC-CSCC-----CB-CTTCCSCCEEECCSSC-----
T ss_pred hccCCCCCEEECCCCcccc-cCCc--c----cCCcCCEEECcCCcC-CCCC-----cc-cccCCCCCEEECcCCc-----
Confidence 4556666666666665321 1111 1 234777777766432 1111 11 345677777777 333
Q ss_pred ccccCHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcC
Q 044164 236 LGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVR 315 (714)
Q Consensus 236 ~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~ 315 (714)
+++.....+ ..+++|++|++++|. +++. +|. ..+++|++|++++|. ++
T Consensus 235 ---l~~~~~~~l-~~l~~L~~L~Ls~n~-l~~~----~~~----------------------~~l~~L~~L~L~~n~-l~ 282 (768)
T 3rgz_A 235 ---LSGDFSRAI-STCTELKLLNISSNQ-FVGP----IPP----------------------LPLKSLQYLSLAENK-FT 282 (768)
T ss_dssp ---CCSCHHHHT-TTCSSCCEEECCSSC-CEES----CCC----------------------CCCTTCCEEECCSSE-EE
T ss_pred ---CCCcccHHH-hcCCCCCEEECCCCc-ccCc----cCc----------------------cccCCCCEEECcCCc-cC
Confidence 332222222 466777777777653 2111 110 145778888887764 21
Q ss_pred CChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCC
Q 044164 316 DTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGC 395 (714)
Q Consensus 316 ~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c 395 (714)
... ...+...+++|++|++.++ .++... ...++.+++|+.|++++|. ++...-......+++|++|++++|
T Consensus 283 ~~i--p~~~~~~~~~L~~L~Ls~n-----~l~~~~-p~~~~~l~~L~~L~L~~n~-l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 283 GEI--PDFLSGACDTLTGLDLSGN-----HFYGAV-PPFFGSCSLLESLALSSNN-FSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp ESC--CCCSCTTCTTCSEEECCSS-----EEEECC-CGGGGGCTTCCEEECCSSE-EEEECCHHHHTTCTTCCEEECCSS
T ss_pred Ccc--CHHHHhhcCcCCEEECcCC-----cCCCcc-chHHhcCCCccEEECCCCc-ccCcCCHHHHhcCCCCCEEeCcCC
Confidence 110 1122233577888888763 222111 2356677888888887774 221100111234777888888777
Q ss_pred CCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHh-cCCCCCEEEEecccccccccchhhhhhccCCCCccccC
Q 044164 396 NKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEP-IRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEAC 474 (714)
Q Consensus 396 ~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~-~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~ 474 (714)
. +++.....+.... ++|++|++++|... +..+..+.. .+++|++|+++.+.+++..+..+ ....
T Consensus 354 ~-l~~~~p~~l~~l~-~~L~~L~Ls~N~l~--~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l-----------~~l~ 418 (768)
T 3rgz_A 354 E-FSGELPESLTNLS-ASLLTLDLSSNNFS--GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL-----------SNCS 418 (768)
T ss_dssp E-EEECCCTTHHHHT-TTCSEEECCSSEEE--EECCTTTTCSTTCCCCEEECCSSEEEEECCGGG-----------GGCT
T ss_pred c-cCccccHHHHhhh-cCCcEEEccCCCcC--CCcChhhhhcccCCccEEECCCCccccccCHHH-----------hcCC
Confidence 5 3321112222221 37888888776532 111222211 14667777774333333334333 1122
Q ss_pred CccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEec
Q 044164 475 GFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVG 554 (714)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~ 554 (714)
.+..++++++..... .+. .-..+++|+.|.++ +..++...+..+.++++|+.|++. +
T Consensus 419 ~L~~L~Ls~N~l~~~---------------~p~---~l~~l~~L~~L~L~---~n~l~~~~p~~~~~l~~L~~L~L~--~ 475 (768)
T 3rgz_A 419 ELVSLHLSFNYLSGT---------------IPS---SLGSLSKLRDLKLW---LNMLEGEIPQELMYVKTLETLILD--F 475 (768)
T ss_dssp TCCEEECCSSEEESC---------------CCG---GGGGCTTCCEEECC---SSCCCSCCCGGGGGCTTCCEEECC--S
T ss_pred CCCEEECcCCcccCc---------------ccH---HHhcCCCCCEEECC---CCcccCcCCHHHcCCCCceEEEec--C
Confidence 333333333211100 000 00346777877773 333332223347788888888885 4
Q ss_pred cccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccc
Q 044164 555 DCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQ 634 (714)
Q Consensus 555 ~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~ 634 (714)
+-..+..|. .+.++++|+.++|+.|.++|.. |..++.++.++.+++.+ |+
T Consensus 476 N~l~~~~p~--------~l~~l~~L~~L~L~~N~l~~~~---p~~~~~l~~L~~L~L~~-------------------N~ 525 (768)
T 3rgz_A 476 NDLTGEIPS--------GLSNCTNLNWISLSNNRLTGEI---PKWIGRLENLAILKLSN-------------------NS 525 (768)
T ss_dssp SCCCSCCCG--------GGGGCTTCCEEECCSSCCCSCC---CGGGGGCTTCCEEECCS-------------------SC
T ss_pred CcccCcCCH--------HHhcCCCCCEEEccCCccCCcC---ChHHhcCCCCCEEECCC-------------------Cc
Confidence 444444555 6788889999999999888877 88888888888888877 99
Q ss_pred cccCcchhhhHHHhhhhhheeec-----cchhHHHHHH
Q 044164 635 RSLSLPAAGLLSQCRSLRKLFIH-----GTANEHFMSF 667 (714)
Q Consensus 635 ~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~~~ 667 (714)
+++.+|++ +++|++|++|++. |++|+.++..
T Consensus 526 l~~~~p~~--l~~l~~L~~L~Ls~N~l~g~ip~~~~~~ 561 (768)
T 3rgz_A 526 FSGNIPAE--LGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561 (768)
T ss_dssp CEEECCGG--GGGCTTCCEEECCSSEEESBCCGGGGTT
T ss_pred ccCcCCHH--HcCCCCCCEEECCCCccCCcCChHHhcc
Confidence 99999988 9999999999998 8999988766
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.86 E-value=2.9e-23 Score=239.26 Aligned_cols=420 Identities=14% Similarity=0.063 Sum_probs=187.7
Q ss_pred hhCCCeeEEEEeecChhhH-HHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHHH
Q 044164 105 HAFPSVVSLTIYARSPLTL-HFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFE 183 (714)
Q Consensus 105 ~~~p~L~~L~l~~~~~~~l-~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~ 183 (714)
..+++|+.|++.+..-..+ +.....+++|++|++.++..... ....++.+++|++|+++++.... -.+..+.
T Consensus 54 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~~L~L~~n~i~~-l~~~~~~ 126 (606)
T 3t6q_A 54 SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM------AETALSGPKALKHLFFIQTGISS-IDFIPLH 126 (606)
T ss_dssp TTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE------CTTTTSSCTTCCEEECTTSCCSC-GGGSCCT
T ss_pred ccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc------ChhhhcccccccEeeccccCccc-CCcchhc
Confidence 4567777877765433222 22225677788888776632110 01134567777777777775322 1111122
Q ss_pred hchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccccccccCHHHHHHHHhhCCCCc--eEEec
Q 044164 184 LYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLGFVGDETLLSIASNCPRLS--LLHLA 260 (714)
Q Consensus 184 ~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~~l~~l~~~~~~L~--~L~L~ 260 (714)
.+++|++|++++|... ++. ++.+. .+++|++|++ ++. ++......+ ..+++|+ .|++.
T Consensus 127 ----~l~~L~~L~L~~n~l~--~~~---~~~~~-~l~~L~~L~L~~n~--------l~~~~~~~~-~~l~~L~~l~L~l~ 187 (606)
T 3t6q_A 127 ----NQKTLESLYLGSNHIS--SIK---LPKGF-PTEKLKVLDFQNNA--------IHYLSKEDM-SSLQQATNLSLNLN 187 (606)
T ss_dssp ----TCTTCCEEECCSSCCC--CCC---CCTTC-CCTTCCEEECCSSC--------CCEECHHHH-HTTTTCCSEEEECT
T ss_pred ----cCCcccEEECCCCccc--ccC---ccccc-CCcccCEEEcccCc--------ccccChhhh-hhhcccceeEEecC
Confidence 2347777777765321 111 11111 2677777777 433 222111112 2456666 56665
Q ss_pred cccCcCCCCCCCCCCCCCCCCCc-----------------------------cCCCcCHHHHHHHHhcCCcccceecccc
Q 044164 261 DSTALSSNSSRADPNNNDEGYAS-----------------------------EDARISPTALGDFFESLPLLEELVLDVG 311 (714)
Q Consensus 261 ~c~~l~~~~~~~~~~~~l~~l~~-----------------------------~~~~it~~~l~~l~~~~p~L~~L~L~~c 311 (714)
++. +++..-.......++.+.. ....++...+..+. -.+|+.|+++++
T Consensus 188 ~n~-l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~--~~~L~~L~l~~n 264 (606)
T 3t6q_A 188 GND-IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC--EMSVESINLQKH 264 (606)
T ss_dssp TCC-CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG--GSEEEEEECTTC
T ss_pred CCc-cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh--cCceeEEEeecC
Confidence 442 2211000000000000000 00111211111100 015666666665
Q ss_pred cCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEE
Q 044164 312 NNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFE 391 (714)
Q Consensus 312 ~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~ 391 (714)
. ++... ......+++|++|++.++ .++.. ...+..+++|++|++++|. ++.... .....+++|+.|+
T Consensus 265 ~-l~~~~---~~~~~~l~~L~~L~l~~n-----~l~~l--p~~l~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 265 Y-FFNIS---SNTFHCFSGLQELDLTAT-----HLSEL--PSGLVGLSTLKKLVLSANK-FENLCQ-ISASNFPSLTHLS 331 (606)
T ss_dssp C-CSSCC---TTTTTTCTTCSEEECTTS-----CCSCC--CSSCCSCTTCCEEECTTCC-CSBGGG-GCGGGCTTCSEEE
T ss_pred c-cCccC---HHHhccccCCCEEeccCC-----ccCCC--ChhhcccccCCEEECccCC-cCcCch-hhhhccCcCCEEE
Confidence 3 22211 112355677777777662 22322 1245666777777777665 332211 1223467777777
Q ss_pred EeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCcc
Q 044164 392 VQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSH 471 (714)
Q Consensus 392 L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~ 471 (714)
+++|......+ ......+ ++|++|++++|... .....+.....+++|++|+++.+.+....+..+ .
T Consensus 332 l~~n~~~~~~~-~~~~~~l-~~L~~L~l~~n~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----------~ 397 (606)
T 3t6q_A 332 IKGNTKRLELG-TGCLENL-ENLRELDLSHDDIE-TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF-----------K 397 (606)
T ss_dssp CCSCSSCCBCC-SSTTTTC-TTCCEEECCSSCCC-EEEESTTTTTTCTTCCEEECCSCSCEEECTTTT-----------T
T ss_pred CCCCCcccccc-hhhhhcc-CcCCEEECCCCccc-cccCcchhcccCCCCCEEECCCCcCCcCCHHHh-----------c
Confidence 77765211110 0111233 67777777776543 111001112345677777773333222222222 1
Q ss_pred ccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCCCCCcceEEEE
Q 044164 472 EACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIK 551 (714)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~ 551 (714)
..+.+..++++.+.... .... ..-..+++|+.|.+ .+..++..+...+.++++|++|+++
T Consensus 398 ~l~~L~~L~l~~n~l~~----------------~~~~-~~~~~l~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~L~ 457 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKV----------------KDAQ-SPFQNLHLLKVLNL---SHSLLDISSEQLFDGLPALQHLNLQ 457 (606)
T ss_dssp TCTTCSEEECTTCCEEC----------------CTTC-CTTTTCTTCCEEEC---TTCCCBTTCTTTTTTCTTCCEEECT
T ss_pred CCccCCeEECCCCcCCC----------------cccc-hhhhCcccCCEEEC---CCCccCCcCHHHHhCCCCCCEEECC
Confidence 12233333333321110 0000 00023456666665 3333444444446666777777764
Q ss_pred EeccccCC---CCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhcc
Q 044164 552 VVGDCRNQ---QKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 552 ~~~~~~~~---~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~ 613 (714)
++-... +.+. .+..+++|+.++|+.|.+++.. |..+..++.++.+++.+
T Consensus 458 --~n~l~~~~~~~~~--------~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 458 --GNHFPKGNIQKTN--------SLQTLGRLEILVLSFCDLSSID---QHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp --TCBCGGGEECSSC--------GGGGCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECCS
T ss_pred --CCCCCccccccch--------hhccCCCccEEECCCCccCccC---hhhhccccCCCEEECCC
Confidence 221111 1111 4556666666666666666554 55555666666666655
No 9
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=1.2e-20 Score=209.78 Aligned_cols=290 Identities=19% Similarity=0.194 Sum_probs=134.8
Q ss_pred CeeEEEEeecC--hhhHHHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhch
Q 044164 109 SVVSLTIYARS--PLTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYP 186 (714)
Q Consensus 109 ~L~~L~l~~~~--~~~l~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~ 186 (714)
++++|++++.. ...+..+...+++|++|++.++..... ....+...+..+++|++|+|+++...+.........++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~--~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEA--RCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHH--HHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHH--HHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 44555554332 222333334556666666665531100 01123344555666666666665422111111111121
Q ss_pred hccCCCcEEEeccCccccCCCCH---HHHHHHHhhCCCCcEEEeeeecccccccccCHHHHHHHHhh----CCCCceEEe
Q 044164 187 SIAASLSHLNLLVGHSFTEGYKS---HELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIASN----CPRLSLLHL 259 (714)
Q Consensus 187 ~~~~~L~~L~L~~n~~~c~~i~~---~~l~~l~~~~~~L~~L~L~c~~~~~~~~~i~~~~l~~l~~~----~~~L~~L~L 259 (714)
...++|++|++++|. +++ ..+......+++|++|+++.+ .+++.++..++.. .++|++|++
T Consensus 82 ~~~~~L~~L~L~~n~-----i~~~~~~~l~~~l~~~~~L~~L~Ls~n-------~i~~~~~~~l~~~l~~~~~~L~~L~L 149 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCC-----LTGAGCGVLSSTLRTLPTLQELHLSDN-------LLGDAGLQLLCEGLLDPQCRLEKLQL 149 (461)
T ss_dssp STTCCCCEEECTTSC-----CBGGGHHHHHHHTTSCTTCCEEECCSS-------BCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred hCCCceeEEEccCCC-----CCHHHHHHHHHHHccCCceeEEECCCC-------cCchHHHHHHHHHHhcCCCcceEEEC
Confidence 111146666666532 232 234444455666666666322 3555445444432 345666666
Q ss_pred ccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHh----ccCCCccEEE
Q 044164 260 ADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLN----SKCPRLKSLK 335 (714)
Q Consensus 260 ~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~----~~~~~L~~L~ 335 (714)
++|. +++ .....+...+..+++|++|++++|. +++.+ +..+. ...++|++|+
T Consensus 150 ~~n~-l~~--------------------~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~--~~~l~~~l~~~~~~L~~L~ 205 (461)
T 1z7x_W 150 EYCS-LSA--------------------ASCEPLASVLRAKPDFKELTVSNND-INEAG--VRVLCQGLKDSPCQLEALK 205 (461)
T ss_dssp TTSC-CBG--------------------GGHHHHHHHHHHCTTCCEEECCSSB-CHHHH--HHHHHHHHHHSCCCCCEEE
T ss_pred CCCC-CCH--------------------HHHHHHHHHHhhCCCCCEEECcCCC-cchHH--HHHHHHHHhcCCCCceEEE
Confidence 6541 110 0112233344456666666666653 32221 22221 1344666666
Q ss_pred eccccCccccCCCcc---hHHHhcCCcCcceeeeecCCCCCHHHHHHHHh----cCCCccEEEEeCCCCCCHHHHHHHHH
Q 044164 336 LGQVHGICREIDSSM---PAAGVALWKGLESLSIKNSADLTDSALIAISL----GCSNLTKFEVQGCNKITKMGMQIFAR 408 (714)
Q Consensus 336 L~~~~~~c~~i~~~~---~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~----~~~~L~~L~L~~c~~lt~~~l~~l~~ 408 (714)
++++ .+++.+ ....+..+++|++|++++|. +++.++..++. .+++|++|++++|. +++.++..++.
T Consensus 206 L~~n-----~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~ 278 (461)
T 1z7x_W 206 LESC-----GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCR 278 (461)
T ss_dssp CTTS-----CCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHH
T ss_pred ccCC-----CCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHH
Confidence 6652 223221 12234456666666666664 55655544433 35666666666664 66665443332
Q ss_pred ---HcCCCeeEEEeeCCCCCCchhHHHHHHhc----CCCCCEEEE
Q 044164 409 ---VLEKTLVDVRISSCKYLNTVCSLQALEPI----RDRIQRLHV 446 (714)
Q Consensus 409 ---~~~~~L~~L~L~~C~~l~~~~~l~~l~~~----~~~L~~L~l 446 (714)
.+ ++|++|++++|. + ++.....+... .++|++|++
T Consensus 279 ~l~~~-~~L~~L~Ls~n~-i-~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 279 VLRAK-ESLKELSLAGNE-L-GDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHC-TTCCEEECTTCC-C-HHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHhhC-CCcceEECCCCC-C-chHHHHHHHHHhccCCccceeeEc
Confidence 34 666666666664 2 23333333321 246666666
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=1.5e-22 Score=233.23 Aligned_cols=492 Identities=14% Similarity=0.042 Sum_probs=274.8
Q ss_pred ccccccccc-CcceeeeccccCCCCCCccccCCCchhHHHHHhhhCCCeeEEEEeecChhhH-HHHcccCCCCCEEEEec
Q 044164 63 DLNQVPVCF-QAINNLDLSCLSPWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYARSPLTL-HFLAPEWPKLSHVKLVR 140 (714)
Q Consensus 63 ~l~~l~~~f-~~L~~L~Ls~~~~~~~~~l~~~~~~~l~~~~L~~~~p~L~~L~l~~~~~~~l-~~l~~~~p~L~~L~L~~ 140 (714)
.+..+|..+ +++++|+++...- .. ..+..+ ..+++|+.|++.+..-..+ +.....+++|++|++.+
T Consensus 22 ~l~~ip~~~~~~l~~L~Ls~n~l------~~-----~~~~~~-~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 22 KLSKVPDDIPSSTKNIDLSFNPL------KI-----LKSYSF-SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp CCSSCCTTSCTTCCEEECTTSCC------CE-----ECTTTT-TTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcccCCCCCCCCcCEEECCCCCc------CE-----eChhhc-cCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 344455433 5788888875320 00 001111 5678899999875543333 22235788899999987
Q ss_pred ccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCC
Q 044164 141 WHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACP 220 (714)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~ 220 (714)
+.... + ....++++++|++|+++++.... ..+..+..+ ++|++|++++|.. +...++....+++
T Consensus 90 n~l~~-~-----~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l----~~L~~L~L~~n~l-----~~~~lp~~~~~l~ 153 (606)
T 3vq2_A 90 NPIQS-F-----SPGSFSGLTSLENLVAVETKLAS-LESFPIGQL----ITLKKLNVAHNFI-----HSCKLPAYFSNLT 153 (606)
T ss_dssp CCCCC-C-----CTTSSTTCTTCCEEECTTSCCCC-SSSSCCTTC----TTCCEEECCSSCC-----CCCCCCGGGGTCT
T ss_pred Ccccc-c-----ChhhcCCcccCCEEEccCCcccc-ccccccCCC----CCCCEEeCCCCcc-----cceechHhHhhcC
Confidence 74221 1 01235678899999999886422 111223333 4999999998532 1112234456789
Q ss_pred CCcEEEe-eeecccccccccCHHHHHHHHhhCCC-CceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHh
Q 044164 221 NLSQLLA-TCVFDHRFLGFVGDETLLSIASNCPR-LSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFE 298 (714)
Q Consensus 221 ~L~~L~L-~c~~~~~~~~~i~~~~l~~l~~~~~~-L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~ 298 (714)
+|++|++ ++.+. .+....+..+. .++. ++.|+++++ .++..+-.......++.+....+.++.......+.
T Consensus 154 ~L~~L~Ls~n~l~-----~~~~~~~~~l~-~L~~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~ 226 (606)
T 3vq2_A 154 NLVHVDLSYNYIQ-----TITVNDLQFLR-ENPQVNLSLDMSLN-PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQ 226 (606)
T ss_dssp TCCEEECCSSCCC-----EECTTTTHHHH-HCTTCCCEEECTTC-CCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHH
T ss_pred CCCEEEccCCcce-----ecChhhhhhhh-ccccccceeeccCC-CcceeCcccccCceeeeeeccCCccchhHHHHHhc
Confidence 9999999 54421 12222333332 2232 557887754 23322111111112333444455666666666677
Q ss_pred cCCcccceeccc--------------------------------ccCcCCChHHHHHHhccCCCccEEEeccccCccccC
Q 044164 299 SLPLLEELVLDV--------------------------------GNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREI 346 (714)
Q Consensus 299 ~~p~L~~L~L~~--------------------------------c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i 346 (714)
.+++|+.+.+.. +..+.... .. ...+++|+.|++.++ .+
T Consensus 227 ~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~---~~-~~~l~~L~~L~l~~~-----~~ 297 (606)
T 3vq2_A 227 NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDI---VK-FHCLANVSAMSLAGV-----SI 297 (606)
T ss_dssp TTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGG---GS-CGGGTTCSEEEEESC-----CC
T ss_pred cccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccc---cc-cccCCCCCEEEecCc-----cc
Confidence 777777665532 11111111 11 345677777777762 22
Q ss_pred CCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCC
Q 044164 347 DSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLN 426 (714)
Q Consensus 347 ~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~ 426 (714)
... ..+..+++|+.|++.+|. ++. +..+ .+++|+.|++++|..++.. .+ ..+ ++|++|++++|...
T Consensus 298 ~~l---~~l~~~~~L~~L~l~~n~-l~~--lp~~--~l~~L~~L~l~~n~~~~~~---~~-~~l-~~L~~L~ls~n~l~- 363 (606)
T 3vq2_A 298 KYL---EDVPKHFKWQSLSIIRCQ-LKQ--FPTL--DLPFLKSLTLTMNKGSISF---KK-VAL-PSLSYLDLSRNALS- 363 (606)
T ss_dssp CCC---CCCCTTCCCSEEEEESCC-CSS--CCCC--CCSSCCEEEEESCSSCEEC---CC-CCC-TTCCEEECCSSCEE-
T ss_pred hhh---hhccccccCCEEEccccc-Ccc--cccC--CCCccceeeccCCcCccch---hh-ccC-CCCCEEECcCCccC-
Confidence 222 245667778888887775 222 2233 5777888888777543322 11 133 77888888777533
Q ss_pred chhHHHHHHhcCCCCCEEEEe-cccccccccchhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCC
Q 044164 427 TVCSLQALEPIRDRIQRLHVD-CVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSG 505 (714)
Q Consensus 427 ~~~~l~~l~~~~~~L~~L~l~-C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 505 (714)
.....+.....+++|++|+++ |.. +... ..+ .....+..+++..+...... ..
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~-~~~-----------~~l~~L~~L~l~~n~l~~~~-------------~~ 417 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGA-IIMS-ANF-----------MGLEELQHLDFQHSTLKRVT-------------EF 417 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSE-EEEC-CCC-----------TTCTTCCEEECTTSEEESTT-------------TT
T ss_pred CCcchhhhhccCCcccEeECCCCcc-ccch-hhc-----------cCCCCCCeeECCCCccCCcc-------------Ch
Confidence 111112223446778888773 432 2211 111 11233344444332111000 00
Q ss_pred CCCCccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCC-CCcccccccccccccCCcccccccc
Q 044164 506 NGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQ-QKPVFMAEFGLNSLVNYPQLSRMHF 584 (714)
Q Consensus 506 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~-~~p~~~~~~~l~~l~~~~~L~~~~l 584 (714)
... ..+++|++|.+ .+..++......+.++++|+.|.+. ++.... ..|. .+..+++|+.++|
T Consensus 418 ~~~----~~l~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~l~--~n~l~~~~~~~--------~~~~l~~L~~L~L 480 (606)
T 3vq2_A 418 SAF----LSLEKLLYLDI---SYTNTKIDFDGIFLGLTSLNTLKMA--GNSFKDNTLSN--------VFANTTNLTFLDL 480 (606)
T ss_dssp TTT----TTCTTCCEEEC---TTSCCEECCTTTTTTCTTCCEEECT--TCEEGGGEECS--------CCTTCTTCCEEEC
T ss_pred hhh----hccccCCEEEC---cCCCCCccchhhhcCCCCCCEEECC--CCcCCCcchHH--------hhccCCCCCEEEC
Confidence 000 34577777777 3334444444557788888888884 222222 1233 5678888888888
Q ss_pred ccCccccccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeec----cch
Q 044164 585 DCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIH----GTA 660 (714)
Q Consensus 585 ~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~ 660 (714)
+.|.+++.. |..+..++.++.+++.+ |++++..|.+ ++++++|++|++. .++
T Consensus 481 s~n~l~~~~---~~~~~~l~~L~~L~Ls~-------------------N~l~~~~~~~--~~~l~~L~~L~l~~N~l~~~ 536 (606)
T 3vq2_A 481 SKCQLEQIS---WGVFDTLHRLQLLNMSH-------------------NNLLFLDSSH--YNQLYSLSTLDCSFNRIETS 536 (606)
T ss_dssp TTSCCCEEC---TTTTTTCTTCCEEECCS-------------------SCCSCEEGGG--TTTCTTCCEEECTTSCCCCE
T ss_pred CCCcCCccC---hhhhcccccCCEEECCC-------------------CcCCCcCHHH--ccCCCcCCEEECCCCcCccc
Confidence 888888765 66677777777777777 8998888888 8999999999999 456
Q ss_pred hHHHHHHHhcCC-Ccccccccccc
Q 044164 661 NEHFMSFFLKIP-TLRDVQLREDY 683 (714)
Q Consensus 661 ~~~~~~~~~~~~-~l~~~~~~~~~ 683 (714)
|+.|..+ + +|+.+.++..-
T Consensus 537 p~~~~~l----~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 537 KGILQHF----PKSLAFFNLTNNS 556 (606)
T ss_dssp ESCGGGS----CTTCCEEECCSCC
T ss_pred CHhHhhh----cccCcEEEccCCC
Confidence 7765555 6 58988887643
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.84 E-value=8.1e-22 Score=227.17 Aligned_cols=465 Identities=13% Similarity=0.054 Sum_probs=265.1
Q ss_pred ccccCcceeeeccccCCCCCCccccCCCchhHHHHHhhhCCCeeEEEEeecChhhH-HHHcccCCCCCEEEEecccccCC
Q 044164 68 PVCFQAINNLDLSCLSPWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYARSPLTL-HFLAPEWPKLSHVKLVRWHQRFN 146 (714)
Q Consensus 68 ~~~f~~L~~L~Ls~~~~~~~~~l~~~~~~~l~~~~L~~~~p~L~~L~l~~~~~~~l-~~l~~~~p~L~~L~L~~~~~~~~ 146 (714)
...+++|++|+++... +.. ..+..+ ..+++|+.|++.+.....+ +.....+++|++|++.++....
T Consensus 52 ~~~l~~L~~L~Ls~n~------l~~-----i~~~~~-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~- 118 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCE------IET-----IEDKAW-HGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS- 118 (606)
T ss_dssp TTTCTTCCEEECTTCC------CCE-----ECTTTT-TTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCC-
T ss_pred ccCCccCcEEeCCCCc------ccc-----cCHHHh-hchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccc-
Confidence 3466788888887432 000 001111 4567888888865443333 2223567888888887764221
Q ss_pred CCChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHh---------
Q 044164 147 APIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITS--------- 217 (714)
Q Consensus 147 ~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~--------- 217 (714)
++. ..++++++|++|+++++......++..+..++ +|++|++++|.. .++....+..+..
T Consensus 119 ~~~-----~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~----~L~~L~Ls~n~l--~~~~~~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 119 LES-----FPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT----NLVHVDLSYNYI--QTITVNDLQFLRENPQVNLSLD 187 (606)
T ss_dssp SSS-----SCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT----TCCEEECCSSCC--CEECTTTTHHHHHCTTCCCEEE
T ss_pred ccc-----cccCCCCCCCEEeCCCCcccceechHhHhhcC----CCCEEEccCCcc--eecChhhhhhhhccccccceee
Confidence 100 11566778888888887654434555555444 888888887532 2222222222211
Q ss_pred --------------hCCCCcEEEeeeecccccccccCHHHHHHHHhhCCCCceEEeccccCcCCC-CCCCCCC-------
Q 044164 218 --------------ACPNLSQLLATCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSN-SSRADPN------- 275 (714)
Q Consensus 218 --------------~~~~L~~L~L~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~-~~~~~~~------- 275 (714)
...+|+.|++..+ .++.........++++|+.+++... .+... .+..+..
T Consensus 188 l~~n~l~~~~~~~~~~~~L~~L~L~~n-------~~~~~~~~~~~~~l~~L~~l~l~~~-~~~~~~~l~~~~~~~~~~l~ 259 (606)
T 3vq2_A 188 MSLNPIDFIQDQAFQGIKLHELTLRGN-------FNSSNIMKTCLQNLAGLHVHRLILG-EFKDERNLEIFEPSIMEGLC 259 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEEEESC-------CSCHHHHHHHHHTTTTCEEEEEEEE-CCTTSCCCSCCCGGGGTTGG
T ss_pred ccCCCcceeCcccccCceeeeeeccCC-------ccchhHHHHHhcccccccccccccc-ccccCCcccccChHHhhhhh
Confidence 1124555555222 3444444444556677776666421 11110 0000000
Q ss_pred -CCCCCCCc-cCCCcCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHH
Q 044164 276 -NNDEGYAS-EDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAA 353 (714)
Q Consensus 276 -~~l~~l~~-~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~ 353 (714)
..+..+.. ....++.... . +..+++|+.|+++++.-. .- . ....+++|++|++.++. ++.. .
T Consensus 260 ~l~l~~l~l~~~~~~~~~~~-~-~~~l~~L~~L~l~~~~~~-~l----~-~l~~~~~L~~L~l~~n~-----l~~l---p 323 (606)
T 3vq2_A 260 DVTIDEFRLTYTNDFSDDIV-K-FHCLANVSAMSLAGVSIK-YL----E-DVPKHFKWQSLSIIRCQ-----LKQF---P 323 (606)
T ss_dssp GSEEEEEEECCCTTCCGGGG-S-CGGGTTCSEEEEESCCCC-CC----C-CCCTTCCCSEEEEESCC-----CSSC---C
T ss_pred hccHhheecccccccccccc-c-cccCCCCCEEEecCccch-hh----h-hccccccCCEEEccccc-----Cccc---c
Confidence 00000000 1122222221 1 556788999999887532 21 1 23677889999998832 2322 1
Q ss_pred HhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHH-HHHHHHHcCCCeeEEEeeCCCCCCchhHHH
Q 044164 354 GVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMG-MQIFARVLEKTLVDVRISSCKYLNTVCSLQ 432 (714)
Q Consensus 354 ~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~-l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~ 432 (714)
.+ .+++|+.|++++|..+... . ...+++|+.|++++|. ++..+ +......+ ++|++|++++|... . ++
T Consensus 324 ~~-~l~~L~~L~l~~n~~~~~~---~-~~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~-~~L~~L~L~~n~l~-~---~~ 392 (606)
T 3vq2_A 324 TL-DLPFLKSLTLTMNKGSISF---K-KVALPSLSYLDLSRNA-LSFSGCCSYSDLGT-NSLRHLDLSFNGAI-I---MS 392 (606)
T ss_dssp CC-CCSSCCEEEEESCSSCEEC---C-CCCCTTCCEEECCSSC-EEEEEECCHHHHCC-SCCCEEECCSCSEE-E---EC
T ss_pred cC-CCCccceeeccCCcCccch---h-hccCCCCCEEECcCCc-cCCCcchhhhhccC-CcccEeECCCCccc-c---ch
Confidence 34 7889999999988544322 1 2247889999998886 43221 11223445 88999999888633 1 11
Q ss_pred HHHhcCCCCCEEEEeccccccccc-chhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCcc
Q 044164 433 ALEPIRDRIQRLHVDCVWESVEQY-SQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSC 511 (714)
Q Consensus 433 ~l~~~~~~L~~L~l~C~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 511 (714)
.....+++|+.|+++.+.+....+ ..+ .....+..++++++..... .....
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------~~l~~L~~L~l~~n~l~~~--------------~~~~~--- 444 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAF-----------LSLEKLLYLDISYTNTKID--------------FDGIF--- 444 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTT-----------TTCTTCCEEECTTSCCEEC--------------CTTTT---
T ss_pred hhccCCCCCCeeECCCCccCCccChhhh-----------hccccCCEEECcCCCCCcc--------------chhhh---
Confidence 222346888888884333322222 222 1224455555554321100 00000
Q ss_pred ccccccccceeeehhccccccc-ccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccc
Q 044164 512 SDTWTKLKYLSLWIAVGELLNP-IRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAI 590 (714)
Q Consensus 512 ~~~~~~L~~L~l~~~~~~~l~~-l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~ 590 (714)
..+++|++|.+ .+..++. .....++++++|+.|.++ ++......|. .+..+++|+.++|+.|.++
T Consensus 445 -~~l~~L~~L~l---~~n~l~~~~~~~~~~~l~~L~~L~Ls--~n~l~~~~~~--------~~~~l~~L~~L~Ls~N~l~ 510 (606)
T 3vq2_A 445 -LGLTSLNTLKM---AGNSFKDNTLSNVFANTTNLTFLDLS--KCQLEQISWG--------VFDTLHRLQLLNMSHNNLL 510 (606)
T ss_dssp -TTCTTCCEEEC---TTCEEGGGEECSCCTTCTTCCEEECT--TSCCCEECTT--------TTTTCTTCCEEECCSSCCS
T ss_pred -cCCCCCCEEEC---CCCcCCCcchHHhhccCCCCCEEECC--CCcCCccChh--------hhcccccCCEEECCCCcCC
Confidence 34678898887 4434443 345568999999999995 3323332233 6889999999999999999
Q ss_pred cccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhh-hhhheeecc
Q 044164 591 GFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCR-SLRKLFIHG 658 (714)
Q Consensus 591 ~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~ 658 (714)
+.. |..+.+++.++.+++.+ |+++ ++|+. +++++ +|++|+++|
T Consensus 511 ~~~---~~~~~~l~~L~~L~l~~-------------------N~l~-~~p~~--~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 511 FLD---SSHYNQLYSLSTLDCSF-------------------NRIE-TSKGI--LQHFPKSLAFFNLTN 554 (606)
T ss_dssp CEE---GGGTTTCTTCCEEECTT-------------------SCCC-CEESC--GGGSCTTCCEEECCS
T ss_pred CcC---HHHccCCCcCCEEECCC-------------------CcCc-ccCHh--HhhhcccCcEEEccC
Confidence 876 88888888888888888 8888 89988 77786 699999995
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.83 E-value=6.7e-23 Score=236.20 Aligned_cols=473 Identities=14% Similarity=0.072 Sum_probs=268.1
Q ss_pred CeeEEEEeecChhhH-HHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhchh
Q 044164 109 SVVSLTIYARSPLTL-HFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPS 187 (714)
Q Consensus 109 ~L~~L~l~~~~~~~l-~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~ 187 (714)
+++.|++++..-..+ +.....+++|++|++.++.... .....+.++++|++|+|+++... ...+..+..
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~--- 103 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW------IHEDTFQSQHRLDTLVLTANPLI-FMAETALSG--- 103 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCE------ECTTTTTTCTTCCEEECTTCCCS-EECTTTTSS---
T ss_pred cCcEEEccCCccCcCChhHhccCccceEEECCCCccce------eChhhccCccccCeeeCCCCccc-ccChhhhcc---
Confidence 567777764433322 2223678999999999874221 11123677899999999998632 222333333
Q ss_pred ccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccccccccCHHHHHHHHhhCCCCceEEeccccCcC
Q 044164 188 IAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALS 266 (714)
Q Consensus 188 ~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~ 266 (714)
+++|++|++++|.. .++.. ....++++|++|++ ++.+ +........ .+++|++|++.++ .++
T Consensus 104 -l~~L~~L~L~~n~i--~~l~~----~~~~~l~~L~~L~L~~n~l--------~~~~~~~~~-~l~~L~~L~L~~n-~l~ 166 (606)
T 3t6q_A 104 -PKALKHLFFIQTGI--SSIDF----IPLHNQKTLESLYLGSNHI--------SSIKLPKGF-PTEKLKVLDFQNN-AIH 166 (606)
T ss_dssp -CTTCCEEECTTSCC--SCGGG----SCCTTCTTCCEEECCSSCC--------CCCCCCTTC-CCTTCCEEECCSS-CCC
T ss_pred -cccccEeeccccCc--ccCCc----chhccCCcccEEECCCCcc--------cccCccccc-CCcccCEEEcccC-ccc
Confidence 44999999998633 11111 11357899999999 5542 211111111 3789999999865 232
Q ss_pred CCC---CCCCCCCCCC--CCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChHHHHHH-----------------
Q 044164 267 SNS---SRADPNNNDE--GYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELL----------------- 324 (714)
Q Consensus 267 ~~~---~~~~~~~~l~--~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l----------------- 324 (714)
+.. +...+. +. .+....+.++..... .....+|+.|++++|..+.. .+..+
T Consensus 167 ~~~~~~~~~l~~--L~~l~L~l~~n~l~~~~~~--~~~~~~L~~L~l~~~~~~~~---~~~~l~~~~l~~l~~~~~~~~~ 239 (606)
T 3t6q_A 167 YLSKEDMSSLQQ--ATNLSLNLNGNDIAGIEPG--AFDSAVFQSLNFGGTQNLLV---IFKGLKNSTIQSLWLGTFEDMD 239 (606)
T ss_dssp EECHHHHHTTTT--CCSEEEECTTCCCCEECTT--TTTTCEEEEEECTTCSCHHH---HHHHTTTCEEEEEECCCCTTSC
T ss_pred ccChhhhhhhcc--cceeEEecCCCccCccChh--HhhhccccccccCCchhHHH---Hhhhccccchhheechhhcccc
Confidence 220 001110 11 111111222211000 01123455555555431100 00000
Q ss_pred --------hccC--CCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeC
Q 044164 325 --------NSKC--PRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQG 394 (714)
Q Consensus 325 --------~~~~--~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~ 394 (714)
...+ .+|++|++.++ .++... ...++.+++|+.|++++|. ++ .+......+++|++|++++
T Consensus 240 ~~~i~~~~~~~l~~~~L~~L~l~~n-----~l~~~~-~~~~~~l~~L~~L~l~~n~-l~--~lp~~l~~l~~L~~L~l~~ 310 (606)
T 3t6q_A 240 DEDISPAVFEGLCEMSVESINLQKH-----YFFNIS-SNTFHCFSGLQELDLTATH-LS--ELPSGLVGLSTLKKLVLSA 310 (606)
T ss_dssp CCCCCGGGGGGGGGSEEEEEECTTC-----CCSSCC-TTTTTTCTTCSEEECTTSC-CS--CCCSSCCSCTTCCEEECTT
T ss_pred ccccChhHhchhhcCceeEEEeecC-----ccCccC-HHHhccccCCCEEeccCCc-cC--CCChhhcccccCCEEECcc
Confidence 0001 15677777662 333321 2357789999999999985 54 2222234589999999999
Q ss_pred CCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccc--cchhhhhhccCCCCccc
Q 044164 395 CNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQ--YSQDHEIRGESSSSSHE 472 (714)
Q Consensus 395 c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~--~~~l~~~~~~~~~~~~~ 472 (714)
|. +++..... ...+ ++|++|++++|.... .........+++|++|+++.+.++... +..+ ..
T Consensus 311 n~-l~~~~~~~-~~~l-~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-----------~~ 374 (606)
T 3t6q_A 311 NK-FENLCQIS-ASNF-PSLTHLSIKGNTKRL--ELGTGCLENLENLRELDLSHDDIETSDCCNLQL-----------RN 374 (606)
T ss_dssp CC-CSBGGGGC-GGGC-TTCSEEECCSCSSCC--BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT-----------TT
T ss_pred CC-cCcCchhh-hhcc-CcCCEEECCCCCccc--ccchhhhhccCcCCEEECCCCccccccCcchhc-----------cc
Confidence 98 55432222 2345 999999999987441 111122345789999999544433322 1122 11
Q ss_pred cCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccc-cccCCCCCCCcceEEEE
Q 044164 473 ACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPI-RLAGLENCPILEEIQIK 551 (714)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l-~~~~l~~~~~L~~L~i~ 551 (714)
.+.+..++++++.... ...... ..+++|++|.+ .+..++.. +...+.++++|+.|.++
T Consensus 375 l~~L~~L~l~~n~l~~--------------~~~~~~----~~l~~L~~L~l---~~n~l~~~~~~~~~~~l~~L~~L~l~ 433 (606)
T 3t6q_A 375 LSHLQSLNLSYNEPLS--------------LKTEAF----KECPQLELLDL---AFTRLKVKDAQSPFQNLHLLKVLNLS 433 (606)
T ss_dssp CTTCCEEECCSCSCEE--------------ECTTTT----TTCTTCSEEEC---TTCCEECCTTCCTTTTCTTCCEEECT
T ss_pred CCCCCEEECCCCcCCc--------------CCHHHh----cCCccCCeEEC---CCCcCCCcccchhhhCcccCCEEECC
Confidence 2344444444321110 000000 24577888877 33333332 33447889999999995
Q ss_pred EeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhcc----------cccc-ccc
Q 044164 552 VVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNG----------IENL-NLK 620 (714)
Q Consensus 552 ~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~----------~~~l-~l~ 620 (714)
++......|. .+..+++|+.++|+.|.+.|.....+..+..++.++.+++.+ +..+ +|+
T Consensus 434 --~n~l~~~~~~--------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 503 (606)
T 3t6q_A 434 --HSLLDISSEQ--------LFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN 503 (606)
T ss_dssp --TCCCBTTCTT--------TTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred --CCccCCcCHH--------HHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCC
Confidence 3222222233 678899999999999999887666667788888888888766 3344 555
Q ss_pred cCCCCCCCCccccccccCcchhhhHHHhhhhhheeec-----cchhHHHHHHHhcCCCccccccccccC
Q 044164 621 ELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIH-----GTANEHFMSFFLKIPTLRDVQLREDYY 684 (714)
Q Consensus 621 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~ 684 (714)
.|++. .|++++..|++ ++++.+| .|++. +..|+.|..+ ++|+.+.++...+
T Consensus 504 ~L~Ls------~N~l~~~~~~~--l~~l~~L-~L~L~~N~l~~~~~~~~~~l----~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 504 HVDLS------HNRLTSSSIEA--LSHLKGI-YLNLASNHISIILPSLLPIL----SQQRTINLRQNPL 559 (606)
T ss_dssp EEECC------SSCCCGGGGGG--GTTCCSC-EEECCSSCCCCCCGGGHHHH----HTSSEEECTTCCE
T ss_pred EEECC------CCccCcCChhH--hCccccc-EEECcCCcccccCHhhcccC----CCCCEEeCCCCCc
Confidence 55443 36777777777 7777777 77776 5566667777 7888888876554
No 13
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=5.2e-19 Score=196.46 Aligned_cols=301 Identities=13% Similarity=0.113 Sum_probs=205.5
Q ss_pred hhhCCCeeEEEEeecChh-----hHHHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCC----CCceEEecCcccc
Q 044164 104 SHAFPSVVSLTIYARSPL-----TLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCP----SLSSIDLSHFYCW 174 (714)
Q Consensus 104 ~~~~p~L~~L~l~~~~~~-----~l~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~----~L~~L~Ls~~~~~ 174 (714)
...+++|+.|++.++.-. .+......+++|++|+++++.. ++.....+...++ +|++|+|++|...
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l-----~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~ 98 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNEL-----GDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 98 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCC-----HHHHHHHHHHTTCSTTCCCCEEECTTSCCB
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcC-----ChHHHHHHHHHHhhCCCceeEEEccCCCCC
Confidence 367899999999876433 3444446789999999998641 2444556666666 7999999999754
Q ss_pred CCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhh----CCCCcEEEe-eeecccccccccCHHHH---HH
Q 044164 175 TEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSA----CPNLSQLLA-TCVFDHRFLGFVGDETL---LS 246 (714)
Q Consensus 175 ~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~----~~~L~~L~L-~c~~~~~~~~~i~~~~l---~~ 246 (714)
+.........+. .+++|++|++++|. +++.++..+... .++|++|++ .|. +++... ..
T Consensus 99 ~~~~~~l~~~l~-~~~~L~~L~Ls~n~-----i~~~~~~~l~~~l~~~~~~L~~L~L~~n~--------l~~~~~~~l~~ 164 (461)
T 1z7x_W 99 GAGCGVLSSTLR-TLPTLQELHLSDNL-----LGDAGLQLLCEGLLDPQCRLEKLQLEYCS--------LSAASCEPLAS 164 (461)
T ss_dssp GGGHHHHHHHTT-SCTTCCEEECCSSB-----CHHHHHHHHHHHHTSTTCCCCEEECTTSC--------CBGGGHHHHHH
T ss_pred HHHHHHHHHHHc-cCCceeEEECCCCc-----CchHHHHHHHHHHhcCCCcceEEECCCCC--------CCHHHHHHHHH
Confidence 433222112222 45699999999742 556666655543 467999999 554 554443 33
Q ss_pred HHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHh----cCCcccceecccccCcCCChH-HH
Q 044164 247 IASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFE----SLPLLEELVLDVGNNVRDTWP-AL 321 (714)
Q Consensus 247 l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~----~~p~L~~L~L~~c~~l~~~~~-~l 321 (714)
....+++|++|+++++ .+++.+...+.. ..++|++|++++| .+++.+. .+
T Consensus 165 ~l~~~~~L~~L~L~~n------------------------~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l 219 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNN------------------------DINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDL 219 (461)
T ss_dssp HHHHCTTCCEEECCSS------------------------BCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHH
T ss_pred HHhhCCCCCEEECcCC------------------------CcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHH
Confidence 3456899999999875 245555555544 3569999999998 4544431 23
Q ss_pred HHHhccCCCccEEEeccccCccccCCCcchHHHh-----cCCcCcceeeeecCCCCCHHHHHHHH---hcCCCccEEEEe
Q 044164 322 ELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGV-----ALWKGLESLSIKNSADLTDSALIAIS---LGCSNLTKFEVQ 393 (714)
Q Consensus 322 ~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l-----~~~~~L~~L~L~~c~~ltd~~l~~l~---~~~~~L~~L~L~ 393 (714)
......+++|++|+++++ .+++.+ ...+ ..+++|++|++++|. +++.++..+. ..+++|++|+++
T Consensus 220 ~~~l~~~~~L~~L~Ls~n-----~l~~~~-~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls 292 (461)
T 1z7x_W 220 CGIVASKASLRELALGSN-----KLGDVG-MAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLA 292 (461)
T ss_dssp HHHHHHCTTCCEEECCSS-----BCHHHH-HHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECT
T ss_pred HHHHHhCCCccEEeccCC-----cCChHH-HHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECC
Confidence 444568999999999983 344432 1122 258999999999995 8988755444 358999999999
Q ss_pred CCCCCCHHHHHHHHHHcC---CCeeEEEeeCCCCCCchhH---HHHHHhcCCCCCEEEEecccccccccch
Q 044164 394 GCNKITKMGMQIFARVLE---KTLVDVRISSCKYLNTVCS---LQALEPIRDRIQRLHVDCVWESVEQYSQ 458 (714)
Q Consensus 394 ~c~~lt~~~l~~l~~~~~---~~L~~L~L~~C~~l~~~~~---l~~l~~~~~~L~~L~l~C~~~~~~~~~~ 458 (714)
+|. +++.+...+...+. ++|++|++++|... +.. +......+++|++|+++.+.++..++..
T Consensus 293 ~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~--~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 293 GNE-LGDEGARLLCETLLEPGCQLESLWVKSCSFT--AACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp TCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCB--GGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred CCC-CchHHHHHHHHHhccCCccceeeEcCCCCCc--hHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 997 89988888877541 59999999999854 333 3333455799999999544554444433
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.80 E-value=3.9e-21 Score=219.58 Aligned_cols=110 Identities=16% Similarity=0.066 Sum_probs=64.7
Q ss_pred hhCCCeeEEEEeecChhhH-HHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHHH
Q 044164 105 HAFPSVVSLTIYARSPLTL-HFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFE 183 (714)
Q Consensus 105 ~~~p~L~~L~l~~~~~~~l-~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~ 183 (714)
..+++|+.|++.+..-..+ ......+++|++|++.++.... + ....+..+++|++|+++++.... -....+.
T Consensus 49 ~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~-----~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~ 121 (570)
T 2z63_A 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-L-----ALGAFSGLSSLQKLVAVETNLAS-LENFPIG 121 (570)
T ss_dssp TTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-E-----CTTTTTTCTTCCEEECTTSCCCC-STTCSCT
T ss_pred hCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-c-----CHhhhcCcccccccccccccccc-CCCcccc
Confidence 5678888888875543332 1222568888888888764211 1 01235678888899888876322 1111122
Q ss_pred hchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eee
Q 044164 184 LYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCV 230 (714)
Q Consensus 184 ~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~ 230 (714)
.+++|++|++++|.. .++ .++..+.++++|++|++ ++.
T Consensus 122 ----~l~~L~~L~L~~n~l--~~~---~lp~~~~~l~~L~~L~l~~n~ 160 (570)
T 2z63_A 122 ----HLKTLKELNVAHNLI--QSF---KLPEYFSNLTNLEHLDLSSNK 160 (570)
T ss_dssp ----TCTTCCEEECCSSCC--CCC---CCCGGGGGCTTCCEEECTTSC
T ss_pred ----ccccccEEecCCCcc--cee---cChhhhcccCCCCEEeCcCCc
Confidence 344888998887532 111 12233556888888888 543
No 15
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=7.8e-21 Score=222.03 Aligned_cols=235 Identities=13% Similarity=0.055 Sum_probs=127.5
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhc
Q 044164 385 SNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRG 464 (714)
Q Consensus 385 ~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~ 464 (714)
++|+.|++++|. ++...... ...+ ++|++|++++|... +.........+++|++|+++.+.+....+..+
T Consensus 381 ~~L~~L~L~~n~-l~~~~~~~-~~~l-~~L~~L~L~~N~l~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----- 450 (680)
T 1ziw_A 381 SPLHILNLTKNK-ISKIESDA-FSWL-GHLEVLDLGLNEIG--QELTGQEWRGLENIFEIYLSYNKYLQLTRNSF----- 450 (680)
T ss_dssp SCCCEEECTTSC-CCEECTTT-TTTC-TTCCEEECCSSCCE--EECCSGGGTTCTTCCEEECCSCSEEECCTTTT-----
T ss_pred CcCceEECCCCC-CCeEChhh-hhCC-CCCCEEeCCCCcCc--cccCcccccCcccccEEecCCCCcceeChhhh-----
Confidence 456666666665 33321111 2344 89999999998753 11111222457889999994333322222222
Q ss_pred cCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCCCCC
Q 044164 465 ESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPI 544 (714)
Q Consensus 465 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~ 544 (714)
...+.+..+++..+..... ...+. .-..+++|+.|++ .+..++.++...+.++++
T Consensus 451 ------~~~~~L~~L~l~~n~l~~~-------------~~~p~---~~~~l~~L~~L~L---s~N~l~~i~~~~~~~l~~ 505 (680)
T 1ziw_A 451 ------ALVPSLQRLMLRRVALKNV-------------DSSPS---PFQPLRNLTILDL---SNNNIANINDDMLEGLEK 505 (680)
T ss_dssp ------TTCTTCCEEECTTSCCBCT-------------TCSSC---TTTTCTTCCEEEC---CSSCCCCCCTTTTTTCTT
T ss_pred ------hcCcccccchhcccccccc-------------ccCCc---ccccCCCCCEEEC---CCCCCCcCChhhhccccc
Confidence 1123333444333211000 00000 0034677888777 445566676666788888
Q ss_pred cceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhccccccccccCCC
Q 044164 545 LEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNY 624 (714)
Q Consensus 545 L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~ 624 (714)
|++|+++ ++-...-.+.....-....+.++++|+.++|+.|.+.... +..+..++.++.++|.+
T Consensus 506 L~~L~Ls--~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~---~~~~~~l~~L~~L~Ls~----------- 569 (680)
T 1ziw_A 506 LEILDLQ--HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP---VEVFKDLFELKIIDLGL----------- 569 (680)
T ss_dssp CCEEECC--SSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCS-----------
T ss_pred cCEEeCC--CCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC---HHHcccccCcceeECCC-----------
Confidence 8888885 3222110000000001124677888888888888776322 23466677777777776
Q ss_pred CCCCCccccccccCcchhhhHHHhhhhhheeec-----cchhHHHH-HHHhcCCCccccccccccC
Q 044164 625 WPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIH-----GTANEHFM-SFFLKIPTLRDVQLREDYY 684 (714)
Q Consensus 625 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 684 (714)
|+++ .+|+. .+.++++|++|+++ +-.+..|. .+ ++|+.+.++..-+
T Consensus 570 --------N~l~-~l~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~----~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 570 --------NNLN-TLPAS-VFNNQVSLKSLNLQKNLITSVEKKVFGPAF----RNLTELDMRFNPF 621 (680)
T ss_dssp --------SCCC-CCCTT-TTTTCTTCCEEECTTSCCCBCCHHHHHHHH----TTCSEEECTTCCC
T ss_pred --------CCCC-cCCHh-HhCCCCCCCEEECCCCcCCccChhHhcccc----cccCEEEccCCCc
Confidence 7777 44433 25678888888887 44445555 45 7888887765443
No 16
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.78 E-value=2.5e-21 Score=224.10 Aligned_cols=35 Identities=11% Similarity=0.004 Sum_probs=23.4
Q ss_pred CCeeEEEEeecChh-hHHHHcccCCCCCEEEEeccc
Q 044164 108 PSVVSLTIYARSPL-TLHFLAPEWPKLSHVKLVRWH 142 (714)
Q Consensus 108 p~L~~L~l~~~~~~-~l~~l~~~~p~L~~L~L~~~~ 142 (714)
.+++.|++.+..-. .++.-...+++|+.|++++..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~ 116 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHG 116 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCc
Confidence 47888888754432 222333678999999998763
No 17
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.78 E-value=1.7e-20 Score=219.15 Aligned_cols=506 Identities=14% Similarity=0.075 Sum_probs=257.2
Q ss_pred ccccccccc-CcceeeeccccCCCCCCccccCCCchhHHHHHhhhCCCeeEEEEeecChhhH-HHHcccCCCCCEEEEec
Q 044164 63 DLNQVPVCF-QAINNLDLSCLSPWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYARSPLTL-HFLAPEWPKLSHVKLVR 140 (714)
Q Consensus 63 ~l~~l~~~f-~~L~~L~Ls~~~~~~~~~l~~~~~~~l~~~~L~~~~p~L~~L~l~~~~~~~l-~~l~~~~p~L~~L~L~~ 140 (714)
.+..+|..+ +++++|+++... +..+. +..+ ..+++|+.|++.+.....+ +.....+++|+.|++.+
T Consensus 15 ~L~~ip~~~~~~l~~L~Ls~n~------l~~~~-----~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 82 (680)
T 1ziw_A 15 KLTQVPDDLPTNITVLNLTHNQ------LRRLP-----AANF-TRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH 82 (680)
T ss_dssp CCSSCCSCSCTTCSEEECCSSC------CCCCC-----GGGG-GGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred CccccccccCCCCcEEECCCCC------CCCcC-----HHHH-hCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence 344444433 578889987532 11110 1112 5678999999975433222 22225689999999987
Q ss_pred ccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCC
Q 044164 141 WHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACP 220 (714)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~ 220 (714)
+.. ..++. ..++++++|++|+++++.. .+-.+..+.. +++|++|++++|.. .++.. ....+++
T Consensus 83 n~l-~~l~~-----~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~----l~~L~~L~Ls~n~l--~~~~~----~~~~~l~ 145 (680)
T 1ziw_A 83 NEL-SQLSD-----KTFAFCTNLTELHLMSNSI-QKIKNNPFVK----QKNLITLDLSHNGL--SSTKL----GTQVQLE 145 (680)
T ss_dssp SCC-CCCCT-----TTTTTCTTCSEEECCSSCC-CCCCSCTTTT----CTTCCEEECCSSCC--SCCCC----CSSSCCT
T ss_pred Ccc-CccCh-----hhhccCCCCCEEECCCCcc-CccChhHccc----cCCCCEEECCCCcc--cccCc----hhhcccc
Confidence 642 11211 1356789999999998864 2222223333 44999999998533 11111 1124688
Q ss_pred CCcEEEe-eeecccccccccCHHHHHHHH-hhCCCCceEEeccccCcCCCCCCCCCC-CCCCCCCccCCCcCHHHHHHHH
Q 044164 221 NLSQLLA-TCVFDHRFLGFVGDETLLSIA-SNCPRLSLLHLADSTALSSNSSRADPN-NNDEGYASEDARISPTALGDFF 297 (714)
Q Consensus 221 ~L~~L~L-~c~~~~~~~~~i~~~~l~~l~-~~~~~L~~L~L~~c~~l~~~~~~~~~~-~~l~~l~~~~~~it~~~l~~l~ 297 (714)
+|++|++ .+. ++......+. ..+++|++|+++++ .+++..-..+.. ..+..+......++......+.
T Consensus 146 ~L~~L~L~~n~--------l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~ 216 (680)
T 1ziw_A 146 NLQELLLSNNK--------IQALKSEELDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216 (680)
T ss_dssp TCCEEECCSSC--------CCCBCHHHHGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHH
T ss_pred cCCEEEccCCc--------ccccCHHHhhccccccccEEECCCC-cccccChhhhhhhhhhhhhhccccccChhhHHHHH
Confidence 9999999 543 2221222221 25688999999866 333321000000 0112222222333333333222
Q ss_pred h--cCCcccceecccccCcCCChHHHHHHhccC--CCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCC
Q 044164 298 E--SLPLLEELVLDVGNNVRDTWPALELLNSKC--PRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLT 373 (714)
Q Consensus 298 ~--~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~--~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~lt 373 (714)
. ..++|+.|+++++.-.+.. ... ...+ ++|++|+++++ .++... ...++.+++|+.|+++++. ++
T Consensus 217 ~~l~~~~L~~L~L~~n~l~~~~---~~~-~~~l~~~~L~~L~Ls~n-----~l~~~~-~~~~~~l~~L~~L~L~~n~-l~ 285 (680)
T 1ziw_A 217 LELANTSIRNLSLSNSQLSTTS---NTT-FLGLKWTNLTMLDLSYN-----NLNVVG-NDSFAWLPQLEYFFLEYNN-IQ 285 (680)
T ss_dssp HHHTTSCCCEEECTTSCCCEEC---TTT-TGGGGGSCCCEEECTTS-----CCCEEC-TTTTTTCTTCCEEECCSCC-BS
T ss_pred HHhhhccccEEEccCCcccccC---hhH-hhccCcCCCCEEECCCC-----CcCccC-cccccCcccccEeeCCCCc-cC
Confidence 1 3467888888876422111 111 1233 44888888773 233221 2356778888888888764 33
Q ss_pred HHHHHHHHhcCCCccEEEEeCCCCCCHH---HHHH----HHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEE
Q 044164 374 DSALIAISLGCSNLTKFEVQGCNKITKM---GMQI----FARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHV 446 (714)
Q Consensus 374 d~~l~~l~~~~~~L~~L~L~~c~~lt~~---~l~~----l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l 446 (714)
... .....++++|+.|++.+|..-... .++. ....+ ++|++|++++|.... ..+.....+++|++|++
T Consensus 286 ~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 286 HLF-SHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPG---IKSNMFTGLINLKYLSL 360 (680)
T ss_dssp EEC-TTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC-TTCCEEECCSCCBCC---CCTTTTTTCTTCCEEEC
T ss_pred ccC-hhhhcCCCCccEEeccchhhhcccccccccccChhhcccC-CCCCEEECCCCccCC---CChhHhccccCCcEEEC
Confidence 221 112234788888888765421111 1110 11234 788888888876431 11122234678888888
Q ss_pred -ecccccccccchhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeeh
Q 044164 447 -DCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWI 525 (714)
Q Consensus 447 -~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 525 (714)
+|.. ........... .-....+..+++..+... ..... .-..+++|+.|++
T Consensus 361 s~n~~-~~~~l~~~~f~-------~~~~~~L~~L~L~~n~l~----------------~~~~~--~~~~l~~L~~L~L-- 412 (680)
T 1ziw_A 361 SNSFT-SLRTLTNETFV-------SLAHSPLHILNLTKNKIS----------------KIESD--AFSWLGHLEVLDL-- 412 (680)
T ss_dssp TTCBS-CCCEECTTTTG-------GGTTSCCCEEECTTSCCC----------------EECTT--TTTTCTTCCEEEC--
T ss_pred CCCch-hhhhcchhhhc-------ccccCcCceEECCCCCCC----------------eEChh--hhhCCCCCCEEeC--
Confidence 3431 11111100000 000011222222221000 00000 0023456666665
Q ss_pred hccccc-ccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccch
Q 044164 526 AVGELL-NPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLS 604 (714)
Q Consensus 526 ~~~~~l-~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~ 604 (714)
.+..+ +.++...+.++++|++|+++ ++......+. .+..+|+|+.++++.|...+.. ..|..+..++
T Consensus 413 -~~N~l~~~~~~~~~~~l~~L~~L~Ls--~n~l~~~~~~--------~~~~~~~L~~L~l~~n~l~~~~-~~p~~~~~l~ 480 (680)
T 1ziw_A 413 -GLNEIGQELTGQEWRGLENIFEIYLS--YNKYLQLTRN--------SFALVPSLQRLMLRRVALKNVD-SSPSPFQPLR 480 (680)
T ss_dssp -CSSCCEEECCSGGGTTCTTCCEEECC--SCSEEECCTT--------TTTTCTTCCEEECTTSCCBCTT-CSSCTTTTCT
T ss_pred -CCCcCccccCcccccCcccccEEecC--CCCcceeChh--------hhhcCcccccchhccccccccc-cCCcccccCC
Confidence 22222 23443446667777777774 2211111122 4566777777777777665311 1266666666
Q ss_pred hhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeeccch---------hHHHHHHHhcCCCcc
Q 044164 605 LWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGTA---------NEHFMSFFLKIPTLR 675 (714)
Q Consensus 605 ~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~---------~~~~~~~~~~~~~l~ 675 (714)
.++.+++.+ |+++...|.+ +++|.+|+.|++++.- |..-..++-.+++|+
T Consensus 481 ~L~~L~Ls~-------------------N~l~~i~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~ 539 (680)
T 1ziw_A 481 NLTILDLSN-------------------NNIANINDDM--LEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539 (680)
T ss_dssp TCCEEECCS-------------------SCCCCCCTTT--TTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCC
T ss_pred CCCEEECCC-------------------CCCCcCChhh--hccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCC
Confidence 666666666 7887655655 7889999999998531 111001123348999
Q ss_pred cccccccc
Q 044164 676 DVQLREDY 683 (714)
Q Consensus 676 ~~~~~~~~ 683 (714)
.+.|+...
T Consensus 540 ~L~L~~N~ 547 (680)
T 1ziw_A 540 ILNLESNG 547 (680)
T ss_dssp EEECCSSC
T ss_pred EEECCCCC
Confidence 99988654
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.77 E-value=5.9e-20 Score=208.93 Aligned_cols=77 Identities=10% Similarity=0.088 Sum_probs=50.8
Q ss_pred cccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccc
Q 044164 513 DTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGF 592 (714)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~ 592 (714)
..+++|++|++ .+..++.+|. .++.+++|+.|.++ +++-...|. . ..++|+.++|+.|.++|.
T Consensus 384 ~~l~~L~~L~L---s~N~l~~lp~-~~~~~~~L~~L~Ls---~N~l~~l~~--------~--~~~~L~~L~Ls~N~l~~~ 446 (549)
T 2z81_A 384 LTLKNLTSLDI---SRNTFHPMPD-SCQWPEKMRFLNLS---STGIRVVKT--------C--IPQTLEVLDVSNNNLDSF 446 (549)
T ss_dssp GGCTTCCEEEC---TTCCCCCCCS-CCCCCTTCCEEECT---TSCCSCCCT--------T--SCTTCSEEECCSSCCSCC
T ss_pred hcCCCCCEEEC---CCCCCccCCh-hhcccccccEEECC---CCCcccccc--------h--hcCCceEEECCCCChhhh
Confidence 34678888887 4455666664 47788899999884 333222222 1 125888999999988874
Q ss_pred cccCCCCCccchhhHHhhhcc
Q 044164 593 ALTAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 593 ~~~~p~~~~~l~~~~~~~l~~ 613 (714)
. ..++.++.+++.+
T Consensus 447 ~-------~~l~~L~~L~Ls~ 460 (549)
T 2z81_A 447 S-------LFLPRLQELYISR 460 (549)
T ss_dssp C-------CCCTTCCEEECCS
T ss_pred c-------ccCChhcEEECCC
Confidence 3 2566677777766
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.76 E-value=1.5e-20 Score=217.68 Aligned_cols=356 Identities=11% Similarity=0.068 Sum_probs=219.6
Q ss_pred HHHHhcCCCCceEEecCccccCCC-----------------hHHHHH--hchhccCCCcEEEeccCccccCCCCHHHHHH
Q 044164 154 FALFEHCPSLSSIDLSHFYCWTED-----------------LPTAFE--LYPSIAASLSHLNLLVGHSFTEGYKSHELLS 214 (714)
Q Consensus 154 ~~~~~~~~~L~~L~Ls~~~~~~~~-----------------~~~~l~--~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~ 214 (714)
...++++++|++|+|+++.. ++. +|..+. .++ +|++|++++|.. .+ .++.
T Consensus 199 p~~l~~l~~L~~L~Ls~n~l-~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~----~L~~L~L~~n~l--~~----~~p~ 267 (636)
T 4eco_A 199 SKAVMRLTKLRQFYMGNSPF-VAENICEAWENENSEYAQQYKTEDLKWDNLK----DLTDVEVYNCPN--LT----KLPT 267 (636)
T ss_dssp CGGGGGCTTCCEEEEESCCC-CGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT----TCCEEEEECCTT--CS----SCCT
T ss_pred CHHHhcccCCCEEECcCCcc-ccccccccccccccchhcccCchhhhhcccC----CCCEEEecCCcC--Cc----cChH
Confidence 33477889999999998873 331 444433 444 999999997532 11 2223
Q ss_pred HHhhCCCCcEEEe-eeecccccccccCH-HHHHHHH-----hhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCC
Q 044164 215 ITSACPNLSQLLA-TCVFDHRFLGFVGD-ETLLSIA-----SNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDAR 287 (714)
Q Consensus 215 l~~~~~~L~~L~L-~c~~~~~~~~~i~~-~~l~~l~-----~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~ 287 (714)
.+.++++|++|++ .|. .+++ .....+. ..+++|++|+++++. ++.+ |
T Consensus 268 ~l~~l~~L~~L~Ls~n~-------~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~i-----p------------- 321 (636)
T 4eco_A 268 FLKALPEMQLINVACNR-------GISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTF-----P------------- 321 (636)
T ss_dssp TTTTCSSCCEEECTTCT-------TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSC-----C-------------
T ss_pred HHhcCCCCCEEECcCCC-------CCccccchHHHHhhhccccCCCCCEEECCCCc-CCcc-----C-------------
Confidence 4457889999999 443 2554 3333332 235889999998652 2211 1
Q ss_pred cCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcC-cceeee
Q 044164 288 ISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKG-LESLSI 366 (714)
Q Consensus 288 it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~-L~~L~L 366 (714)
. ...+..+++|+.|+++++. ++.. +. ....+++|++|+++++ .++.. ...++.+++ |+.|++
T Consensus 322 --~---~~~l~~l~~L~~L~L~~N~-l~g~---ip-~~~~l~~L~~L~L~~N-----~l~~l--p~~l~~l~~~L~~L~L 384 (636)
T 4eco_A 322 --V---ETSLQKMKKLGMLECLYNQ-LEGK---LP-AFGSEIKLASLNLAYN-----QITEI--PANFCGFTEQVENLSF 384 (636)
T ss_dssp --C---HHHHTTCTTCCEEECCSCC-CEEE---CC-CCEEEEEESEEECCSS-----EEEEC--CTTSEEECTTCCEEEC
T ss_pred --c---hhhhccCCCCCEEeCcCCc-Cccc---hh-hhCCCCCCCEEECCCC-----ccccc--cHhhhhhcccCcEEEc
Confidence 1 0135577899999998874 3211 11 2367788999999873 23322 235677888 999999
Q ss_pred ecCCCCCHHHHHHHHhc--CCCccEEEEeCCCCCCHHHHHHHHH------HcCCCeeEEEeeCCCCCCchhHHHHHHhcC
Q 044164 367 KNSADLTDSALIAISLG--CSNLTKFEVQGCNKITKMGMQIFAR------VLEKTLVDVRISSCKYLNTVCSLQALEPIR 438 (714)
Q Consensus 367 ~~c~~ltd~~l~~l~~~--~~~L~~L~L~~c~~lt~~~l~~l~~------~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~ 438 (714)
+++. ++ .+...... +++|+.|++++|. ++......+.. .+ ++|++|++++|... .....+...+
T Consensus 385 s~N~-l~--~lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~~~-~~L~~L~Ls~N~l~---~lp~~~~~~l 456 (636)
T 4eco_A 385 AHNK-LK--YIPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPFKG-INVSSINLSNNQIS---KFPKELFSTG 456 (636)
T ss_dssp CSSC-CS--SCCSCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCCCC-CCEEEEECCSSCCC---SCCTHHHHTT
T ss_pred cCCc-Cc--ccchhhhhcccCccCEEECcCCc-CCCcchhhhcccccccccC-CCCCEEECcCCccC---cCCHHHHccC
Confidence 9876 44 22222122 3479999999887 44321111110 22 58999999998744 2233445557
Q ss_pred CCCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccc
Q 044164 439 DRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKL 518 (714)
Q Consensus 439 ~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 518 (714)
++|++|+++.+.++ ..+.... . . ....-..+++|
T Consensus 457 ~~L~~L~Ls~N~l~-~i~~~~~-------------------~--~------------------------~~~~~~~l~~L 490 (636)
T 4eco_A 457 SPLSSINLMGNMLT-EIPKNSL-------------------K--D------------------------ENENFKNTYLL 490 (636)
T ss_dssp CCCSEEECCSSCCS-BCCSSSS-------------------E--E------------------------TTEECTTGGGC
T ss_pred CCCCEEECCCCCCC-CcCHHHh-------------------c--c------------------------ccccccccCCc
Confidence 89999999544443 2222210 0 0 00000123478
Q ss_pred cceeeehhcccccccccccCCC--CCCCcceEEEEEeccccCCCCcccccccccccccCCcccccccc------ccCccc
Q 044164 519 KYLSLWIAVGELLNPIRLAGLE--NCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHF------DCGDAI 590 (714)
Q Consensus 519 ~~L~l~~~~~~~l~~l~~~~l~--~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l------~~~~~~ 590 (714)
+.|.+ .+..++.++.. +. ++++|+.|.++ +|.... .|. .+..+++|+.++| +.|.+.
T Consensus 491 ~~L~L---s~N~l~~lp~~-~~~~~l~~L~~L~Ls--~N~l~~-ip~--------~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 491 TSIDL---RFNKLTKLSDD-FRATTLPYLVGIDLS--YNSFSK-FPT--------QPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp CEEEC---CSSCCCBCCGG-GSTTTCTTCCEEECC--SSCCSS-CCC--------GGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred cEEEC---cCCcCCccChh-hhhccCCCcCEEECC--CCCCCC-cCh--------hhhcCCCCCEEECCCCcccccCccc
Confidence 88887 44555666644 54 88899999886 443333 555 6778888999988 456667
Q ss_pred cccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeeccc
Q 044164 591 GFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGT 659 (714)
Q Consensus 591 ~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 659 (714)
|.+ |..+.+++.++.+++.+ |++ +++|.. +. ++|++|+|+|.
T Consensus 556 ~~~---p~~l~~l~~L~~L~Ls~-------------------N~l-~~ip~~--~~--~~L~~L~Ls~N 597 (636)
T 4eco_A 556 REW---PEGITLCPSLTQLQIGS-------------------NDI-RKVNEK--IT--PNISVLDIKDN 597 (636)
T ss_dssp CCC---CTTGGGCSSCCEEECCS-------------------SCC-CBCCSC--CC--TTCCEEECCSC
T ss_pred ccC---hHHHhcCCCCCEEECCC-------------------CcC-CccCHh--Hh--CcCCEEECcCC
Confidence 766 77777788777777777 787 788876 33 78888888854
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.76 E-value=2.3e-19 Score=202.72 Aligned_cols=296 Identities=14% Similarity=0.070 Sum_probs=150.5
Q ss_pred CCCeeEEEEeecChhhH-HHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhc
Q 044164 107 FPSVVSLTIYARSPLTL-HFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELY 185 (714)
Q Consensus 107 ~p~L~~L~l~~~~~~~l-~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l 185 (714)
+++++.|++.+.....+ +.....+++|++|+++++.... .....+.++++|++|+|+++... .++..
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~---- 87 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY------LDISVFKFNQELEYLDLSHNKLV--KISCH---- 87 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCE------EEGGGGTTCTTCCEEECCSSCCC--EEECC----
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccCC------cChHHhhcccCCCEEecCCCcee--ecCcc----
Confidence 37899999986654433 1223678999999999875221 11234678899999999998643 33332
Q ss_pred hhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEeeeecccccccccCHHHHHHHHhhCCCC--ceEEecccc
Q 044164 186 PSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIASNCPRL--SLLHLADST 263 (714)
Q Consensus 186 ~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~i~~~~l~~l~~~~~~L--~~L~L~~c~ 263 (714)
.+++|++|++++|.. .++ .++.....+++|++|+++.+ .++...+ ..+++| +.|++.++.
T Consensus 88 --~l~~L~~L~L~~N~l--~~~---~~p~~~~~l~~L~~L~L~~n-------~l~~~~~----~~l~~L~L~~L~l~~n~ 149 (520)
T 2z7x_B 88 --PTVNLKHLDLSFNAF--DAL---PICKEFGNMSQLKFLGLSTT-------HLEKSSV----LPIAHLNISKVLLVLGE 149 (520)
T ss_dssp --CCCCCSEEECCSSCC--SSC---CCCGGGGGCTTCCEEEEEES-------SCCGGGG----GGGTTSCEEEEEEEECT
T ss_pred --ccCCccEEeccCCcc--ccc---cchhhhccCCcceEEEecCc-------ccchhhc----cccccceeeEEEeeccc
Confidence 245999999998643 111 12234567899999999333 3444322 355777 999998763
Q ss_pred Cc-CCCCCCCCCCCCCCCCCcc-------CCCcCHHHHHHHHhcCCcccceecccccCcCC---ChHHHHHHhccCCCcc
Q 044164 264 AL-SSNSSRADPNNNDEGYASE-------DARISPTALGDFFESLPLLEELVLDVGNNVRD---TWPALELLNSKCPRLK 332 (714)
Q Consensus 264 ~l-~~~~~~~~~~~~l~~l~~~-------~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~---~~~~l~~l~~~~~~L~ 332 (714)
-. .+. .|. .+..+... .+.+........+..+++|+.|++++|..... ....+. ....+++|+
T Consensus 150 l~~~~~----~~~-~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~ 223 (520)
T 2z7x_B 150 TYGEKE----DPE-GLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLS 223 (520)
T ss_dssp TTTSSC----CTT-TTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCC
T ss_pred cccccc----ccc-cccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchh
Confidence 10 111 110 00000000 00000000001122456677777766531000 000112 235667777
Q ss_pred EEEeccccCccccCCCcchHHHh---cCCcCcceeeeecCCCCCHHHHHHHH-----hcCCCccEEEEeCCCC-CCHHHH
Q 044164 333 SLKLGQVHGICREIDSSMPAAGV---ALWKGLESLSIKNSADLTDSALIAIS-----LGCSNLTKFEVQGCNK-ITKMGM 403 (714)
Q Consensus 333 ~L~L~~~~~~c~~i~~~~~l~~l---~~~~~L~~L~L~~c~~ltd~~l~~l~-----~~~~~L~~L~L~~c~~-lt~~~l 403 (714)
.|++.++. +++.. ...+ ..+++|++|++++|. +++. +.... ..+++|+.+++.++.. +....+
T Consensus 224 ~L~l~~~~-----l~~~~-~~~~~~~~~~~~L~~L~l~~n~-l~~~-~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~ 295 (520)
T 2z7x_B 224 NLTLNNIE-----TTWNS-FIRILQLVWHTTVWYFSISNVK-LQGQ-LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYI 295 (520)
T ss_dssp EEEEEEEE-----EEHHH-HHHHHHHHHTSSCSEEEEEEEE-EESC-CCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHH
T ss_pred hccccccc-----cCHHH-HHHHHHHhhhCcccEEEeeccc-ccCc-cccchhhcccccCceeEeccccccceecchhhh
Confidence 77776521 22111 1111 124577777777664 2110 01101 3356666777766652 222333
Q ss_pred HHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccc
Q 044164 404 QIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESV 453 (714)
Q Consensus 404 ~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~ 453 (714)
..+... ++|+.|++++|.... ... ...+++|++|+++.+.++.
T Consensus 296 ~~~~~~--~~L~~L~l~~n~l~~-~~~----~~~l~~L~~L~Ls~n~l~~ 338 (520)
T 2z7x_B 296 YEIFSN--MNIKNFTVSGTRMVH-MLC----PSKISPFLHLDFSNNLLTD 338 (520)
T ss_dssp HHHHHT--CCCSEEEEESSCCCC-CCC----CSSCCCCCEEECCSSCCCT
T ss_pred hccccc--CceeEEEcCCCcccc-ccc----hhhCCcccEEEeECCccCh
Confidence 333333 567777777776441 110 0345777777774334333
No 21
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.75 E-value=1.2e-19 Score=207.26 Aligned_cols=106 Identities=14% Similarity=0.177 Sum_probs=68.8
Q ss_pred ccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccC--CCCcccccccccccccCCccccccccccCcccc
Q 044164 514 TWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRN--QQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 514 ~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~--~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~ 591 (714)
.+++|++|.+ .+..++......+.++++|+.|.+. +|.- +..|. .+..+++|+.++|+.|.+++
T Consensus 419 ~l~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~l~---~n~l~~~~~p~--------~~~~l~~L~~L~l~~n~l~~ 484 (570)
T 2z63_A 419 SLRNLIYLDI---SHTHTRVAFNGIFNGLSSLEVLKMA---GNSFQENFLPD--------IFTELRNLTFLDLSQCQLEQ 484 (570)
T ss_dssp TCTTCCEEEC---TTSCCEECCTTTTTTCTTCCEEECT---TCEEGGGEECS--------CCTTCTTCCEEECTTSCCCE
T ss_pred cCCCCCEEeC---cCCcccccchhhhhcCCcCcEEECc---CCcCccccchh--------hhhcccCCCEEECCCCcccc
Confidence 4566777776 3333344344456777888888774 3321 22333 56777788888888887776
Q ss_pred ccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeec
Q 044164 592 FALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIH 657 (714)
Q Consensus 592 ~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 657 (714)
.. |..+..++.++.+++.+ |++++..|+. +++|++|++|+++
T Consensus 485 ~~---~~~~~~l~~L~~L~l~~-------------------n~l~~~~~~~--~~~l~~L~~L~l~ 526 (570)
T 2z63_A 485 LS---PTAFNSLSSLQVLNMAS-------------------NQLKSVPDGI--FDRLTSLQKIWLH 526 (570)
T ss_dssp EC---TTTTTTCTTCCEEECCS-------------------SCCSCCCTTT--TTTCTTCCEEECC
T ss_pred CC---hhhhhcccCCCEEeCCC-------------------CcCCCCCHHH--hhcccCCcEEEec
Confidence 55 66666777677677666 7777665555 6778888888887
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.75 E-value=6.5e-19 Score=200.30 Aligned_cols=302 Identities=11% Similarity=0.077 Sum_probs=177.6
Q ss_pred HhhCCCCceEEeccccCcCCCCCCCCC----CCCCCCCCccCCCcCHHHHHHHH---hcCCcccceecccccCcCCChH-
Q 044164 248 ASNCPRLSLLHLADSTALSSNSSRADP----NNNDEGYASEDARISPTALGDFF---ESLPLLEELVLDVGNNVRDTWP- 319 (714)
Q Consensus 248 ~~~~~~L~~L~L~~c~~l~~~~~~~~~----~~~l~~l~~~~~~it~~~l~~l~---~~~p~L~~L~L~~c~~l~~~~~- 319 (714)
...+++|++|+++++ .+++......+ ...++.+......+++.....+. ..+++|+.|++++|.-......
T Consensus 192 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~ 270 (549)
T 2z81_A 192 ADILSSVRYLELRDT-NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFN 270 (549)
T ss_dssp HHSTTTBSEEEEESC-BCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCC
T ss_pred HhhcccccEEEccCC-ccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccccccccccc
Confidence 346788999999865 34433111111 01233333444556655555443 4567788888877753211000
Q ss_pred -HHHHHhccCCCccEEEeccccCcccc-CCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCC
Q 044164 320 -ALELLNSKCPRLKSLKLGQVHGICRE-IDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNK 397 (714)
Q Consensus 320 -~l~~l~~~~~~L~~L~L~~~~~~c~~-i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~ 397 (714)
........+++|+.|.+.++.-.... ..+. .......++|+.|++++|. ++... ..+..++++|+.|++++|.
T Consensus 271 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l--~~~~~~~~~L~~L~l~~n~-l~~ip-~~~~~~l~~L~~L~Ls~N~- 345 (549)
T 2z81_A 271 PSESDVVSELGKVETVTIRRLHIPQFYLFYDL--STVYSLLEKVKRITVENSK-VFLVP-CSFSQHLKSLEFLDLSENL- 345 (549)
T ss_dssp CCTTTCCCCCTTCCEEEEESCBCSCGGGSCCC--CHHHHHSTTCCEEEEESSC-CCCCC-HHHHHHCTTCCEEECCSSC-
T ss_pred ccchhhhhhhcccccccccccccchhhhcccc--hhhhhhcccceEEEeccCc-cccCC-HHHHhcCccccEEEccCCc-
Confidence 00011245677888887663210000 0000 0122345788888888875 43211 2233458889999998887
Q ss_pred CCHHHHHHH--HHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccccCC
Q 044164 398 ITKMGMQIF--ARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACG 475 (714)
Q Consensus 398 lt~~~l~~l--~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~ 475 (714)
+++...... ...+ ++|++|++++|... +..........+++|++|+++.+.++ ..++.+
T Consensus 346 l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~---------------- 406 (549)
T 2z81_A 346 MVEEYLKNSACKGAW-PSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC---------------- 406 (549)
T ss_dssp CCHHHHHHHTCTTSS-TTCCEEECTTSCCC-CHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCC----------------
T ss_pred cccccccchhhhhcc-ccCcEEEccCCccc-ccccchhhhhcCCCCCEEECCCCCCc-cCChhh----------------
Confidence 666543221 2334 88999999888654 22111233456788999988433332 122222
Q ss_pred ccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEecc
Q 044164 476 FKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGD 555 (714)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~ 555 (714)
..+++|++|.+ .+..++.++.. + .++|+.|+++ ++
T Consensus 407 -------------------------------------~~~~~L~~L~L---s~N~l~~l~~~-~--~~~L~~L~Ls--~N 441 (549)
T 2z81_A 407 -------------------------------------QWPEKMRFLNL---SSTGIRVVKTC-I--PQTLEVLDVS--NN 441 (549)
T ss_dssp -------------------------------------CCCTTCCEEEC---TTSCCSCCCTT-S--CTTCSEEECC--SS
T ss_pred -------------------------------------cccccccEEEC---CCCCcccccch-h--cCCceEEECC--CC
Confidence 34678999888 44445555432 2 3699999995 32
Q ss_pred ccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhccccccccccCCCCCCCCcccccc
Q 044164 556 CRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQR 635 (714)
Q Consensus 556 ~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~ 635 (714)
.... ....+++|+.++|+.|.++. + |. ...++.++.+++.+ |++
T Consensus 442 ~l~~------------~~~~l~~L~~L~Ls~N~l~~-i---p~-~~~l~~L~~L~Ls~-------------------N~l 485 (549)
T 2z81_A 442 NLDS------------FSLFLPRLQELYISRNKLKT-L---PD-ASLFPVLLVMKISR-------------------NQL 485 (549)
T ss_dssp CCSC------------CCCCCTTCCEEECCSSCCSS-C---CC-GGGCTTCCEEECCS-------------------SCC
T ss_pred Chhh------------hcccCChhcEEECCCCccCc-C---CC-cccCccCCEEecCC-------------------Ccc
Confidence 2111 12578999999999999873 3 54 35677777777777 999
Q ss_pred ccCcchhhhHHHhhhhhheeec
Q 044164 636 SLSLPAAGLLSQCRSLRKLFIH 657 (714)
Q Consensus 636 ~~~~~~~~~~~~~~~l~~l~~~ 657 (714)
++..|++ ++++++|++|+++
T Consensus 486 ~~~~~~~--~~~l~~L~~L~l~ 505 (549)
T 2z81_A 486 KSVPDGI--FDRLTSLQKIWLH 505 (549)
T ss_dssp CCCCTTG--GGGCTTCCEEECC
T ss_pred CCcCHHH--HhcCcccCEEEec
Confidence 9888877 8899999999998
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=7.8e-20 Score=216.32 Aligned_cols=31 Identities=10% Similarity=0.053 Sum_probs=20.2
Q ss_pred CCeeEEEEeecChh-hHHHHcccCCCCCEEEE
Q 044164 108 PSVVSLTIYARSPL-TLHFLAPEWPKLSHVKL 138 (714)
Q Consensus 108 p~L~~L~l~~~~~~-~l~~l~~~~p~L~~L~L 138 (714)
.+++.|++.+.... .++.-...+++|+.|++
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdL 354 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSF 354 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEES
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeee
Confidence 46888888754432 23333367888999998
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=6.5e-18 Score=188.19 Aligned_cols=339 Identities=16% Similarity=0.175 Sum_probs=214.2
Q ss_pred CCCeeEEEEeecChhhHHHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhch
Q 044164 107 FPSVVSLTIYARSPLTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYP 186 (714)
Q Consensus 107 ~p~L~~L~l~~~~~~~l~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~ 186 (714)
++++++|.+.+.....++.+ ..+++|++|++.++.... +.. +.++++|++|+++++... +. +. +..+
T Consensus 45 l~~l~~L~l~~~~i~~l~~~-~~l~~L~~L~Ls~n~l~~-------~~~-~~~l~~L~~L~l~~n~l~-~~-~~-~~~l- 111 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSIDGV-EYLNNLTQINFSNNQLTD-------ITP-LKNLTKLVDILMNNNQIA-DI-TP-LANL- 111 (466)
T ss_dssp HHTCCEEECCSSCCCCCTTG-GGCTTCCEEECCSSCCCC-------CGG-GTTCTTCCEEECCSSCCC-CC-GG-GTTC-
T ss_pred hccccEEecCCCCCccCcch-hhhcCCCEEECCCCccCC-------chh-hhccccCCEEECCCCccc-cC-hh-hcCC-
Confidence 45788888876554444433 568889999998774221 112 677889999999888643 22 22 3334
Q ss_pred hccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccccccccCHHHHHHHHhhCCCCceEEeccccCc
Q 044164 187 SIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTAL 265 (714)
Q Consensus 187 ~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l 265 (714)
++|++|++++|.. .++. . ...+++|++|++ .|.+ ++. .. ...+++|++|++.+. +
T Consensus 112 ---~~L~~L~L~~n~l--~~~~-----~-~~~l~~L~~L~l~~n~l--------~~~--~~-~~~l~~L~~L~l~~~--~ 167 (466)
T 1o6v_A 112 ---TNLTGLTLFNNQI--TDID-----P-LKNLTNLNRLELSSNTI--------SDI--SA-LSGLTSLQQLSFGNQ--V 167 (466)
T ss_dssp ---TTCCEEECCSSCC--CCCG-----G-GTTCTTCSEEEEEEEEE--------CCC--GG-GTTCTTCSEEEEEES--C
T ss_pred ---CCCCEEECCCCCC--CCCh-----H-HcCCCCCCEEECCCCcc--------CCC--hh-hccCCcccEeecCCc--c
Confidence 4899999987532 2221 1 567889999999 5542 211 11 346788888888532 2
Q ss_pred CCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCcccc
Q 044164 266 SSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICRE 345 (714)
Q Consensus 266 ~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~ 345 (714)
.+. .. +..+++|+.|++++|. ++... ....+++|++|++.++ .
T Consensus 168 ~~~-------------------------~~-~~~l~~L~~L~l~~n~-l~~~~-----~l~~l~~L~~L~l~~n-----~ 210 (466)
T 1o6v_A 168 TDL-------------------------KP-LANLTTLERLDISSNK-VSDIS-----VLAKLTNLESLIATNN-----Q 210 (466)
T ss_dssp CCC-------------------------GG-GTTCTTCCEEECCSSC-CCCCG-----GGGGCTTCSEEECCSS-----C
T ss_pred cCc-------------------------hh-hccCCCCCEEECcCCc-CCCCh-----hhccCCCCCEEEecCC-----c
Confidence 111 01 4467889999998875 43321 2467889999999873 3
Q ss_pred CCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCC
Q 044164 346 IDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYL 425 (714)
Q Consensus 346 i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l 425 (714)
+++.. .++.+++|+.|++++|. +++. ..+ ..+++|+.|++++|. +++.. . ...+ ++|++|++++|...
T Consensus 211 l~~~~---~~~~l~~L~~L~l~~n~-l~~~--~~l-~~l~~L~~L~l~~n~-l~~~~--~-~~~l-~~L~~L~l~~n~l~ 278 (466)
T 1o6v_A 211 ISDIT---PLGILTNLDELSLNGNQ-LKDI--GTL-ASLTNLTDLDLANNQ-ISNLA--P-LSGL-TKLTELKLGANQIS 278 (466)
T ss_dssp CCCCG---GGGGCTTCCEEECCSSC-CCCC--GGG-GGCTTCSEEECCSSC-CCCCG--G-GTTC-TTCSEEECCSSCCC
T ss_pred ccccc---cccccCCCCEEECCCCC-cccc--hhh-hcCCCCCEEECCCCc-cccch--h-hhcC-CCCCEEECCCCccC
Confidence 34332 36678899999999876 4432 222 357889999998887 44322 1 3344 88999999888654
Q ss_pred CchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCC
Q 044164 426 NTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSG 505 (714)
Q Consensus 426 ~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 505 (714)
. .. . ...+++|+.|+++...++... .+
T Consensus 279 ~-~~---~-~~~l~~L~~L~L~~n~l~~~~--~~---------------------------------------------- 305 (466)
T 1o6v_A 279 N-IS---P-LAGLTALTNLELNENQLEDIS--PI---------------------------------------------- 305 (466)
T ss_dssp C-CG---G-GTTCTTCSEEECCSSCCSCCG--GG----------------------------------------------
T ss_pred c-cc---c-ccCCCccCeEEcCCCcccCch--hh----------------------------------------------
Confidence 2 11 1 345688999988433322211 12
Q ss_pred CCCCccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccc
Q 044164 506 NGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFD 585 (714)
Q Consensus 506 ~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~ 585 (714)
..+++|+.|.+ .+..++..+. +..+++|++|.+. +|.-... ..++.+++|+.++++
T Consensus 306 -------~~l~~L~~L~L---~~n~l~~~~~--~~~l~~L~~L~l~---~n~l~~~---------~~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 306 -------SNLKNLTYLTL---YFNNISDISP--VSSLTKLQRLFFY---NNKVSDV---------SSLANLTNINWLSAG 361 (466)
T ss_dssp -------GGCTTCSEEEC---CSSCCSCCGG--GGGCTTCCEEECC---SSCCCCC---------GGGTTCTTCCEEECC
T ss_pred -------cCCCCCCEEEC---cCCcCCCchh--hccCccCCEeECC---CCccCCc---------hhhccCCCCCEEeCC
Confidence 45678888887 3334444443 5678899999985 3322111 257888999999999
Q ss_pred cCccccccccCCCCCccchhhHHhhhcc
Q 044164 586 CGDAIGFALTAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 586 ~~~~~~~~~~~p~~~~~l~~~~~~~l~~ 613 (714)
.|.++|.. | ...++.++.+++.+
T Consensus 362 ~n~l~~~~---~--~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 362 HNQISDLT---P--LANLTRITQLGLND 384 (466)
T ss_dssp SSCCCBCG---G--GTTCTTCCEEECCC
T ss_pred CCccCccc---h--hhcCCCCCEEeccC
Confidence 99888765 4 45566666666655
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.74 E-value=1.1e-18 Score=193.47 Aligned_cols=108 Identities=15% Similarity=0.216 Sum_probs=66.9
Q ss_pred cccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccc
Q 044164 513 DTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGF 592 (714)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~ 592 (714)
..+++|++|.+ .+..++.++...+.++++|+.|.++ ++......|. .+..+++|+.++|+.|.+++.
T Consensus 296 ~~l~~L~~L~L---s~n~l~~~~~~~~~~l~~L~~L~Ls--~N~l~~~~~~--------~~~~l~~L~~L~Ls~N~l~~~ 362 (455)
T 3v47_A 296 SHFTDLEQLTL---AQNEINKIDDNAFWGLTHLLKLNLS--QNFLGSIDSR--------MFENLDKLEVLDLSYNHIRAL 362 (455)
T ss_dssp TTCTTCCEEEC---TTSCCCEECTTTTTTCTTCCEEECC--SSCCCEECGG--------GGTTCTTCCEEECCSSCCCEE
T ss_pred ccCCCCCEEEC---CCCcccccChhHhcCcccCCEEECC--CCccCCcChh--------HhcCcccCCEEECCCCccccc
Confidence 34566777766 4444555555557777777777774 2222221122 566777777777777777665
Q ss_pred cccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeec
Q 044164 593 ALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIH 657 (714)
Q Consensus 593 ~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 657 (714)
. |..+..++.++.+++.+ |+++.-.++. ++++++|++|+|+
T Consensus 363 ~---~~~~~~l~~L~~L~L~~-------------------N~l~~~~~~~--~~~l~~L~~L~l~ 403 (455)
T 3v47_A 363 G---DQSFLGLPNLKELALDT-------------------NQLKSVPDGI--FDRLTSLQKIWLH 403 (455)
T ss_dssp C---TTTTTTCTTCCEEECCS-------------------SCCSCCCTTT--TTTCTTCCEEECC
T ss_pred C---hhhccccccccEEECCC-------------------CccccCCHhH--hccCCcccEEEcc
Confidence 5 66666677777777766 6666432223 5667777777776
No 26
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.74 E-value=3.1e-18 Score=193.39 Aligned_cols=417 Identities=14% Similarity=0.116 Sum_probs=255.0
Q ss_pred CcceeeeccccCCCCCCccccCCCchhHHHHHhhhCCCeeEEEEeecChhhH-HHHcccCCCCCEEEEecccccCCCCCh
Q 044164 72 QAINNLDLSCLSPWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYARSPLTL-HFLAPEWPKLSHVKLVRWHQRFNAPIG 150 (714)
Q Consensus 72 ~~L~~L~Ls~~~~~~~~~l~~~~~~~l~~~~L~~~~p~L~~L~l~~~~~~~l-~~l~~~~p~L~~L~L~~~~~~~~~~~~ 150 (714)
+++++|+++... + ....+..+ ..+++|+.|++++..-..+ +.....+++|++|+++++... .++..
T Consensus 21 ~~L~~L~Ls~n~------i-----~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 87 (520)
T 2z7x_B 21 QKTTILNISQNY------I-----SELWTSDI-LSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH 87 (520)
T ss_dssp TTCSEEECCSSC------C-----CCCCHHHH-TTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC
T ss_pred ccccEEECCCCc------c-----cccChhhc-cccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc
Confidence 688999997532 1 11123334 6789999999986654443 233367899999999987422 22111
Q ss_pred HHHHHHHhcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCC--cEEEe-
Q 044164 151 YDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNL--SQLLA- 227 (714)
Q Consensus 151 ~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L--~~L~L- 227 (714)
.+++|++|+++++......++..++.++ +|++|++++|. ++.. ....+++| +.|++
T Consensus 88 --------~l~~L~~L~L~~N~l~~~~~p~~~~~l~----~L~~L~L~~n~-----l~~~----~~~~l~~L~L~~L~l~ 146 (520)
T 2z7x_B 88 --------PTVNLKHLDLSFNAFDALPICKEFGNMS----QLKFLGLSTTH-----LEKS----SVLPIAHLNISKVLLV 146 (520)
T ss_dssp --------CCCCCSEEECCSSCCSSCCCCGGGGGCT----TCCEEEEEESS-----CCGG----GGGGGTTSCEEEEEEE
T ss_pred --------ccCCccEEeccCCccccccchhhhccCC----cceEEEecCcc-----cchh----hccccccceeeEEEee
Confidence 6899999999999854434555555555 99999999853 3332 23457788 99999
Q ss_pred eeec--ccccccccCHHHHHHH----------------------HhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCc
Q 044164 228 TCVF--DHRFLGFVGDETLLSI----------------------ASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYAS 283 (714)
Q Consensus 228 ~c~~--~~~~~~~i~~~~l~~l----------------------~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~ 283 (714)
.|.+ .... ...+..+ ..++++|+.|++.++...
T Consensus 147 ~n~l~~~~~~-----~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~------------------ 203 (520)
T 2z7x_B 147 LGETYGEKED-----PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED------------------ 203 (520)
T ss_dssp ECTTTTSSCC-----TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCST------------------
T ss_pred cccccccccc-----cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccc------------------
Confidence 5542 1100 0001000 012333334433332100
Q ss_pred cCCCcC-HHHHHHHHhcCCcccceecccccCcCCChHHHHHHh--ccCCCccEEEeccccCccccCCCcchHHHh-----
Q 044164 284 EDARIS-PTALGDFFESLPLLEELVLDVGNNVRDTWPALELLN--SKCPRLKSLKLGQVHGICREIDSSMPAAGV----- 355 (714)
Q Consensus 284 ~~~~it-~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~--~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l----- 355 (714)
..+. ..+....+..+++|+.|+++++. + .+..+..+. ..+++|++|++.++. +++.. ...+
T Consensus 204 --~~~~~~~~~~~~l~~l~~L~~L~l~~~~-l--~~~~~~~~~~~~~~~~L~~L~l~~n~-----l~~~~-p~~~~~~~~ 272 (520)
T 2z7x_B 204 --NKCSYFLSILAKLQTNPKLSNLTLNNIE-T--TWNSFIRILQLVWHTTVWYFSISNVK-----LQGQL-DFRDFDYSG 272 (520)
T ss_dssp --TTTHHHHHHHHGGGGCTTCCEEEEEEEE-E--EHHHHHHHHHHHHTSSCSEEEEEEEE-----EESCC-CCCCCCCCS
T ss_pred --cccceeecchhhhccccchhhccccccc-c--CHHHHHHHHHHhhhCcccEEEeeccc-----ccCcc-ccchhhccc
Confidence 0000 11122245678999999998874 2 222222222 135799999998832 22111 1233
Q ss_pred cCCcCcceeeeecCCC-CCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHH
Q 044164 356 ALWKGLESLSIKNSAD-LTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQAL 434 (714)
Q Consensus 356 ~~~~~L~~L~L~~c~~-ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l 434 (714)
+.+++|+.+++.++.. +.+..+..+.. .++|+.|++++|. ++.... ...+ ++|++|++++|... +.....
T Consensus 273 ~~l~~L~~l~l~~n~~~~p~~~~~~~~~-~~~L~~L~l~~n~-l~~~~~---~~~l-~~L~~L~Ls~n~l~--~~~~~~- 343 (520)
T 2z7x_B 273 TSLKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVSGTR-MVHMLC---PSKI-SPFLHLDFSNNLLT--DTVFEN- 343 (520)
T ss_dssp CCCCEEEEEEEEECCCCSCTHHHHHHHH-TCCCSEEEEESSC-CCCCCC---CSSC-CCCCEEECCSSCCC--TTTTTT-
T ss_pred ccCceeEeccccccceecchhhhhcccc-cCceeEEEcCCCc-cccccc---hhhC-CcccEEEeECCccC--hhhhhh-
Confidence 6788999999988752 33234444433 3679999999988 433211 1244 89999999998754 211222
Q ss_pred HhcCCCCCEEEEecccccc--cccchhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccc
Q 044164 435 EPIRDRIQRLHVDCVWESV--EQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCS 512 (714)
Q Consensus 435 ~~~~~~L~~L~l~C~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (714)
...+++|+.|+++.+.++. ..+..+
T Consensus 344 ~~~l~~L~~L~L~~N~l~~l~~~~~~~----------------------------------------------------- 370 (520)
T 2z7x_B 344 CGHLTELETLILQMNQLKELSKIAEMT----------------------------------------------------- 370 (520)
T ss_dssp CCCCSSCCEEECCSSCCCBHHHHHHHH-----------------------------------------------------
T ss_pred hccCCCCCEEEccCCccCccccchHHH-----------------------------------------------------
Confidence 2457899999995444332 112223
Q ss_pred cccccccceeeehhccccccc-ccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccc
Q 044164 513 DTWTKLKYLSLWIAVGELLNP-IRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~-l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~ 591 (714)
..+++|++|++ .+..++. ++...+..+++|++|.++ ++......|. .+. ++|+.++|+.|.++
T Consensus 371 ~~l~~L~~L~L---s~N~l~~~l~~~~~~~l~~L~~L~Ls--~N~l~~~~~~--------~l~--~~L~~L~Ls~N~l~- 434 (520)
T 2z7x_B 371 TQMKSLQQLDI---SQNSVSYDEKKGDCSWTKSLLSLNMS--SNILTDTIFR--------CLP--PRIKVLDLHSNKIK- 434 (520)
T ss_dssp TTCTTCCEEEC---CSSCCBCCGGGCSCCCCTTCCEEECC--SSCCCGGGGG--------SCC--TTCCEEECCSSCCC-
T ss_pred hhCCCCCEEEC---CCCcCCcccccchhccCccCCEEECc--CCCCCcchhh--------hhc--ccCCEEECCCCccc-
Confidence 45788888888 4444555 776667889999999995 3333232222 222 78999999999877
Q ss_pred ccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeecc
Q 044164 592 FALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHG 658 (714)
Q Consensus 592 ~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 658 (714)
.+ |.....++.++.+++.+ |+++ ++|.. .++++++|++|+++|
T Consensus 435 ~i---p~~~~~l~~L~~L~L~~-------------------N~l~-~l~~~-~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 435 SI---PKQVVKLEALQELNVAS-------------------NQLK-SVPDG-IFDRLTSLQKIWLHT 477 (520)
T ss_dssp CC---CGGGGGCTTCCEEECCS-------------------SCCC-CCCTT-TTTTCTTCCEEECCS
T ss_pred cc---chhhhcCCCCCEEECCC-------------------CcCC-ccCHH-HhccCCcccEEECcC
Confidence 23 77666788888888877 8887 67765 467789999999984
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=7.1e-19 Score=208.13 Aligned_cols=354 Identities=14% Similarity=0.093 Sum_probs=215.7
Q ss_pred HHHhcCCCCceEEecCccccCC----------------ChHHHHH--hchhccCCCcEEEeccCccccCCCCHHHHHHHH
Q 044164 155 ALFEHCPSLSSIDLSHFYCWTE----------------DLPTAFE--LYPSIAASLSHLNLLVGHSFTEGYKSHELLSIT 216 (714)
Q Consensus 155 ~~~~~~~~L~~L~Ls~~~~~~~----------------~~~~~l~--~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~ 216 (714)
..++++++|++|+|+++....+ .+|..+. .+ ++|++|+|++|.. .+ .++..+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L----~~L~~L~Ls~N~l--~~----~iP~~l 511 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNL----KDLTDVELYNCPN--MT----QLPDFL 511 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGC----TTCCEEEEESCTT--CC----SCCGGG
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccC----CCCCEEECcCCCC--Cc----cChHHH
Confidence 3477889999999998874321 1343332 34 4899999987532 11 223445
Q ss_pred hhCCCCcEEEe-eeecccccccccCH-HH---HHHHH---hhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCc
Q 044164 217 SACPNLSQLLA-TCVFDHRFLGFVGD-ET---LLSIA---SNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARI 288 (714)
Q Consensus 217 ~~~~~L~~L~L-~c~~~~~~~~~i~~-~~---l~~l~---~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~i 288 (714)
.++++|+.|++ .+. .++. .. +..+. ..+++|+.|+++++. ++.+ |
T Consensus 512 ~~L~~L~~L~Ls~N~-------~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~i-----p-------------- 564 (876)
T 4ecn_A 512 YDLPELQSLNIACNR-------GISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEF-----P-------------- 564 (876)
T ss_dssp GGCSSCCEEECTTCT-------TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBC-----C--------------
T ss_pred hCCCCCCEEECcCCC-------CcccccchHHHHhhhhcccccCCccEEEeeCCc-CCcc-----C--------------
Confidence 67889999999 442 1444 22 22221 345689999998652 2211 1
Q ss_pred CHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcC-cceeeee
Q 044164 289 SPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKG-LESLSIK 367 (714)
Q Consensus 289 t~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~-L~~L~L~ 367 (714)
. ...+..+++|+.|+++++. ++. +. ....+++|+.|+++++ .++.. ...+..+++ |+.|+++
T Consensus 565 -~---~~~l~~L~~L~~L~Ls~N~-l~~----lp-~~~~L~~L~~L~Ls~N-----~l~~l--p~~l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 565 -A---SASLQKMVKLGLLDCVHNK-VRH----LE-AFGTNVKLTDLKLDYN-----QIEEI--PEDFCAFTDQVEGLGFS 627 (876)
T ss_dssp -C---HHHHTTCTTCCEEECTTSC-CCB----CC-CCCTTSEESEEECCSS-----CCSCC--CTTSCEECTTCCEEECC
T ss_pred -C---hhhhhcCCCCCEEECCCCC-ccc----ch-hhcCCCcceEEECcCC-----ccccc--hHHHhhccccCCEEECc
Confidence 1 0134577899999998874 331 22 3477889999999873 33322 235677788 9999999
Q ss_pred cCCCCCHHHHHHHHhcC--CCccEEEEeCCCCCCHHHHHHHH---H--HcCCCeeEEEeeCCCCCCchhHHHHHHhcCCC
Q 044164 368 NSADLTDSALIAISLGC--SNLTKFEVQGCNKITKMGMQIFA---R--VLEKTLVDVRISSCKYLNTVCSLQALEPIRDR 440 (714)
Q Consensus 368 ~c~~ltd~~l~~l~~~~--~~L~~L~L~~c~~lt~~~l~~l~---~--~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~ 440 (714)
+|. ++ .+....... ++|+.|++++|. ++.. ++.+. . .+ ++|+.|++++|... .....+...+++
T Consensus 628 ~N~-L~--~lp~~~~~~~~~~L~~L~Ls~N~-l~g~-ip~l~~~l~~~~~-~~L~~L~Ls~N~L~---~lp~~~~~~l~~ 698 (876)
T 4ecn_A 628 HNK-LK--YIPNIFNAKSVYVMGSVDFSYNK-IGSE-GRNISCSMDDYKG-INASTVTLSYNEIQ---KFPTELFATGSP 698 (876)
T ss_dssp SSC-CC--SCCSCCCTTCSSCEEEEECCSSC-TTTT-SSSCSSCTTTCCC-CCEEEEECCSSCCC---SCCHHHHHTTCC
T ss_pred CCC-CC--cCchhhhccccCCCCEEECcCCc-CCCc-cccchhhhccccC-CCcCEEEccCCcCC---ccCHHHHccCCC
Confidence 886 54 222222222 449999998887 4331 11111 0 11 48999999988754 233444556789
Q ss_pred CCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccc
Q 044164 441 IQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKY 520 (714)
Q Consensus 441 L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 520 (714)
|+.|+++.+.++ ..+.... . .... ...++++|+.
T Consensus 699 L~~L~Ls~N~L~-~ip~~~~-------------------~----------------------~~~~----~l~nl~~L~~ 732 (876)
T 4ecn_A 699 ISTIILSNNLMT-SIPENSL-------------------K----------------------PKDG----NYKNTYLLTT 732 (876)
T ss_dssp CSEEECCSCCCS-CCCTTSS-------------------S----------------------CTTS----CCTTGGGCCE
T ss_pred CCEEECCCCcCC-ccChHHh-------------------c----------------------cccc----cccccCCccE
Confidence 999999544433 2222210 0 0000 0023457888
Q ss_pred eeeehhcccccccccccCCC--CCCCcceEEEEEeccccCCCCcccccccccccccCCcccccccccc------Cccccc
Q 044164 521 LSLWIAVGELLNPIRLAGLE--NCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDC------GDAIGF 592 (714)
Q Consensus 521 L~l~~~~~~~l~~l~~~~l~--~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~------~~~~~~ 592 (714)
|.+ .+..++.++.. +. ++++|+.|.++ +|.... .|. .+..+++|+.++|+. |.+.|.
T Consensus 733 L~L---s~N~L~~lp~~-l~~~~l~~L~~L~Ls--~N~L~~-lp~--------~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 733 IDL---RFNKLTSLSDD-FRATTLPYLSNMDVS--YNCFSS-FPT--------QPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp EEC---CSSCCCCCCGG-GSTTTCTTCCEEECC--SSCCSS-CCC--------GGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred EEC---CCCCCccchHH-hhhccCCCcCEEEeC--CCCCCc-cch--------hhhcCCCCCEEECCCCCCccccccccc
Confidence 877 44455666644 54 78888888885 333333 455 667888888888865 666666
Q ss_pred cccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeeccc
Q 044164 593 ALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGT 659 (714)
Q Consensus 593 ~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 659 (714)
+ |..+.+|+.++.|+|.+ |++ +++|.. +. ++|+.|+|++.
T Consensus 798 i---p~~l~~L~~L~~L~Ls~-------------------N~L-~~Ip~~--l~--~~L~~LdLs~N 837 (876)
T 4ecn_A 798 W---PTGITTCPSLIQLQIGS-------------------NDI-RKVDEK--LT--PQLYILDIADN 837 (876)
T ss_dssp C---CTTGGGCSSCCEEECCS-------------------SCC-CBCCSC--CC--SSSCEEECCSC
T ss_pred C---hHHHhcCCCCCEEECCC-------------------CCC-CccCHh--hc--CCCCEEECCCC
Confidence 5 77777787777777777 777 788876 32 58888888854
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.73 E-value=1.8e-17 Score=184.52 Aligned_cols=347 Identities=14% Similarity=0.151 Sum_probs=235.8
Q ss_pred cccCcceeeeccccCCCCCCccccCCCchhHHHHHhhhCCCeeEEEEeecChhhHHHHcccCCCCCEEEEecccccCCCC
Q 044164 69 VCFQAINNLDLSCLSPWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYARSPLTLHFLAPEWPKLSHVKLVRWHQRFNAP 148 (714)
Q Consensus 69 ~~f~~L~~L~Ls~~~~~~~~~l~~~~~~~l~~~~L~~~~p~L~~L~l~~~~~~~l~~l~~~~p~L~~L~L~~~~~~~~~~ 148 (714)
..+++++.|+++...- ..++ . + ..+++|+.|++++.....+.. ...+++|++|++.++....
T Consensus 43 ~~l~~l~~L~l~~~~i---~~l~---------~-~-~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~--- 104 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGI---KSID---------G-V-EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD--- 104 (466)
T ss_dssp HHHHTCCEEECCSSCC---CCCT---------T-G-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC---
T ss_pred hHhccccEEecCCCCC---ccCc---------c-h-hhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCcccc---
Confidence 3578899999864321 1111 1 1 578999999998765555444 4789999999999874321
Q ss_pred ChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEee
Q 044164 149 IGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLAT 228 (714)
Q Consensus 149 ~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L~ 228 (714)
+.. +.++++|++|+++++.... ++. +.. +++|++|++++|.. .++. ....+++|+.|+++
T Consensus 105 ----~~~-~~~l~~L~~L~L~~n~l~~--~~~-~~~----l~~L~~L~l~~n~l--~~~~------~~~~l~~L~~L~l~ 164 (466)
T 1o6v_A 105 ----ITP-LANLTNLTGLTLFNNQITD--IDP-LKN----LTNLNRLELSSNTI--SDIS------ALSGLTSLQQLSFG 164 (466)
T ss_dssp ----CGG-GTTCTTCCEEECCSSCCCC--CGG-GTT----CTTCSEEEEEEEEE--CCCG------GGTTCTTCSEEEEE
T ss_pred ----Chh-hcCCCCCCEEECCCCCCCC--ChH-HcC----CCCCCEEECCCCcc--CCCh------hhccCCcccEeecC
Confidence 112 7789999999999987432 222 333 45999999998532 2221 25678999999994
Q ss_pred eecccccccccCHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceec
Q 044164 229 CVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVL 308 (714)
Q Consensus 229 c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L 308 (714)
+. +.+ +.. ..++++|++|+++++. +++. ..+..+++|++|++
T Consensus 165 ~~--------~~~--~~~-~~~l~~L~~L~l~~n~-l~~~--------------------------~~l~~l~~L~~L~l 206 (466)
T 1o6v_A 165 NQ--------VTD--LKP-LANLTTLERLDISSNK-VSDI--------------------------SVLAKLTNLESLIA 206 (466)
T ss_dssp ES--------CCC--CGG-GTTCTTCCEEECCSSC-CCCC--------------------------GGGGGCTTCSEEEC
T ss_pred Cc--------ccC--chh-hccCCCCCEEECcCCc-CCCC--------------------------hhhccCCCCCEEEe
Confidence 33 111 011 3578999999998763 2221 11457899999999
Q ss_pred ccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCcc
Q 044164 309 DVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLT 388 (714)
Q Consensus 309 ~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~ 388 (714)
++|. ++...+ ...+++|++|++.++ .+++. ..+..+++|+.|++++|. +++.. . ...+++|+
T Consensus 207 ~~n~-l~~~~~-----~~~l~~L~~L~l~~n-----~l~~~---~~l~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~ 268 (466)
T 1o6v_A 207 TNNQ-ISDITP-----LGILTNLDELSLNGN-----QLKDI---GTLASLTNLTDLDLANNQ-ISNLA--P-LSGLTKLT 268 (466)
T ss_dssp CSSC-CCCCGG-----GGGCTTCCEEECCSS-----CCCCC---GGGGGCTTCSEEECCSSC-CCCCG--G-GTTCTTCS
T ss_pred cCCc-cccccc-----ccccCCCCEEECCCC-----Ccccc---hhhhcCCCCCEEECCCCc-cccch--h-hhcCCCCC
Confidence 9985 433321 467999999999983 33433 367789999999999986 44322 2 45689999
Q ss_pred EEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCC
Q 044164 389 KFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSS 468 (714)
Q Consensus 389 ~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~ 468 (714)
.|++++|. +++.. . ...+ ++|+.|++++|.... . .. ...+++|+.|+++.+.++...+ +
T Consensus 269 ~L~l~~n~-l~~~~--~-~~~l-~~L~~L~L~~n~l~~-~---~~-~~~l~~L~~L~L~~n~l~~~~~--~--------- 327 (466)
T 1o6v_A 269 ELKLGANQ-ISNIS--P-LAGL-TALTNLELNENQLED-I---SP-ISNLKNLTYLTLYFNNISDISP--V--------- 327 (466)
T ss_dssp EEECCSSC-CCCCG--G-GTTC-TTCSEEECCSSCCSC-C---GG-GGGCTTCSEEECCSSCCSCCGG--G---------
T ss_pred EEECCCCc-cCccc--c-ccCC-CccCeEEcCCCcccC-c---hh-hcCCCCCCEEECcCCcCCCchh--h---------
Confidence 99999997 55432 2 3345 999999999987542 1 12 3467999999994333333222 2
Q ss_pred CccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCCCCCcceE
Q 044164 469 SSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEI 548 (714)
Q Consensus 469 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L 548 (714)
..+++|+.|.+ .+..++.++ .+.++++|+.|
T Consensus 328 --------------------------------------------~~l~~L~~L~l---~~n~l~~~~--~l~~l~~L~~L 358 (466)
T 1o6v_A 328 --------------------------------------------SSLTKLQRLFF---YNNKVSDVS--SLANLTNINWL 358 (466)
T ss_dssp --------------------------------------------GGCTTCCEEEC---CSSCCCCCG--GGTTCTTCCEE
T ss_pred --------------------------------------------ccCccCCEeEC---CCCccCCch--hhccCCCCCEE
Confidence 45788998888 344555553 47789999999
Q ss_pred EEEEeccccCCCCcccccccccccccCCccccccccccCcccc
Q 044164 549 QIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 549 ~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~ 591 (714)
.++ ++...... .+..+++|+.++++.|.++|
T Consensus 359 ~l~--~n~l~~~~----------~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 359 SAG--HNQISDLT----------PLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp ECC--SSCCCBCG----------GGTTCTTCCEEECCCEEEEC
T ss_pred eCC--CCccCccc----------hhhcCCCCCEEeccCCcccC
Confidence 995 32222211 26889999999999999888
No 29
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.73 E-value=1.7e-17 Score=176.21 Aligned_cols=274 Identities=16% Similarity=0.174 Sum_probs=199.2
Q ss_pred hhHHHHcccCCCCCEEEEecccccCCCCChHHHHHHHhcC--CCCceEEecCccccCCChHHHHHhchhccCCCcEEEec
Q 044164 121 LTLHFLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHC--PSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLL 198 (714)
Q Consensus 121 ~~l~~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~--~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~ 198 (714)
..+..+...-..++++++.+.... . ..+..+ ++++.|+++++.... ..+. +. .+++|++|+++
T Consensus 37 ~~W~~~~~~~~~~~~l~l~~~~~~-----~----~~~~~~~~~~l~~L~l~~n~l~~-~~~~-~~----~~~~L~~L~L~ 101 (336)
T 2ast_B 37 KRWYRLASDESLWQTLDLTGKNLH-----P----DVTGRLLSQGVIAFRCPRSFMDQ-PLAE-HF----SPFRVQHMDLS 101 (336)
T ss_dssp HHHHHHHTCSTTSSEEECTTCBCC-----H----HHHHHHHHTTCSEEECTTCEECS-CCCS-CC----CCBCCCEEECT
T ss_pred HHHHHHhcCchhheeeccccccCC-----H----HHHHhhhhccceEEEcCCccccc-cchh-hc----cCCCCCEEEcc
Confidence 344444333233788888765311 2 223344 789999999886432 2222 11 34599999999
Q ss_pred cCccccCCCCHHHHHHHHhhCCCCcEEEeeeecccccccccCHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCC
Q 044164 199 VGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNND 278 (714)
Q Consensus 199 ~n~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l 278 (714)
+|. +++.++..+...|++|++|++..+ .+++.....+. .+++|++|++++|.
T Consensus 102 ~~~-----l~~~~~~~~~~~~~~L~~L~L~~~-------~l~~~~~~~l~-~~~~L~~L~L~~~~--------------- 153 (336)
T 2ast_B 102 NSV-----IEVSTLHGILSQCSKLQNLSLEGL-------RLSDPIVNTLA-KNSNLVRLNLSGCS--------------- 153 (336)
T ss_dssp TCE-----ECHHHHHHHHTTBCCCSEEECTTC-------BCCHHHHHHHT-TCTTCSEEECTTCB---------------
T ss_pred CCC-----cCHHHHHHHHhhCCCCCEEeCcCc-------ccCHHHHHHHh-cCCCCCEEECCCCC---------------
Confidence 742 667778889999999999999333 47777777775 59999999999873
Q ss_pred CCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhccCC-CccEEEeccccCccccCCCcchHHHhcC
Q 044164 279 EGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCP-RLKSLKLGQVHGICREIDSSMPAAGVAL 357 (714)
Q Consensus 279 ~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~-~L~~L~L~~~~~~c~~i~~~~~l~~l~~ 357 (714)
.+++.++..++..+++|++|++++|..+++. .+......++ +|++|+++++. ..+++......+..
T Consensus 154 --------~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~--~~~~~~~~l~~~L~~L~l~~~~---~~~~~~~l~~~~~~ 220 (336)
T 2ast_B 154 --------GFSEFALQTLLSSCSRLDELNLSWCFDFTEK--HVQVAVAHVSETITQLNLSGYR---KNLQKSDLSTLVRR 220 (336)
T ss_dssp --------SCCHHHHHHHHHHCTTCCEEECCCCTTCCHH--HHHHHHHHSCTTCCEEECCSCG---GGSCHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHhcCCCCCEEcCCCCCCcChH--HHHHHHHhcccCCCEEEeCCCc---ccCCHHHHHHHHhh
Confidence 3566778888889999999999999666443 3566678899 99999999832 03443332345678
Q ss_pred CcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhc
Q 044164 358 WKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPI 437 (714)
Q Consensus 358 ~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~ 437 (714)
+++|+.|++++|..+++..+..+. .+++|++|++++|..+++.++..+.. + ++|++|++++| + ++..+..+...
T Consensus 221 ~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~-~-~~L~~L~l~~~--i-~~~~~~~l~~~ 294 (336)
T 2ast_B 221 CPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGE-I-PTLKTLQVFGI--V-PDGTLQLLKEA 294 (336)
T ss_dssp CTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGG-C-TTCCEEECTTS--S-CTTCHHHHHHH
T ss_pred CCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHhc-C-CCCCEEeccCc--c-CHHHHHHHHhh
Confidence 999999999999878888777665 48999999999998888887765544 5 99999999999 5 45567777654
Q ss_pred CCCCCEEEEecccccccccchh
Q 044164 438 RDRIQRLHVDCVWESVEQYSQD 459 (714)
Q Consensus 438 ~~~L~~L~l~C~~~~~~~~~~l 459 (714)
++.|+++|+.+++..+...
T Consensus 295 ---l~~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 295 ---LPHLQINCSHFTTIARPTI 313 (336)
T ss_dssp ---STTSEESCCCSCCTTCSSC
T ss_pred ---CcceEEecccCccccCCcc
Confidence 4455688888776665544
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.72 E-value=1.3e-18 Score=193.06 Aligned_cols=362 Identities=15% Similarity=0.120 Sum_probs=202.8
Q ss_pred CCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccCCCh-HHHHHhchhccCCCcEEEeccCccccCCCCH
Q 044164 131 PKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDL-PTAFELYPSIAASLSHLNLLVGHSFTEGYKS 209 (714)
Q Consensus 131 p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~-~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~ 209 (714)
++|++|++.+..... + ....+.++++|++|+++++... ..+ +..+..+ ++|++|++++|.. .++.
T Consensus 30 ~~l~~L~Ls~n~i~~-~-----~~~~~~~l~~L~~L~L~~n~~~-~~i~~~~~~~l----~~L~~L~Ls~n~l--~~~~- 95 (455)
T 3v47_A 30 AHVNYVDLSLNSIAE-L-----NETSFSRLQDLQFLKVEQQTPG-LVIRNNTFRGL----SSLIILKLDYNQF--LQLE- 95 (455)
T ss_dssp TTCCEEECCSSCCCE-E-----CTTTTSSCTTCCEEECCCCSTT-CEECTTTTTTC----TTCCEEECTTCTT--CEEC-
T ss_pred CccCEEEecCCccCc-C-----ChhHhccCccccEEECcCCccc-ceECccccccc----ccCCEEeCCCCcc--CccC-
Confidence 456666666543111 0 0112456677777777766532 111 1122223 3777777776422 1111
Q ss_pred HHHHHHHhhCCCCcEEEe-eeecccccccccCHHHHHH-HHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCC
Q 044164 210 HELLSITSACPNLSQLLA-TCVFDHRFLGFVGDETLLS-IASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDAR 287 (714)
Q Consensus 210 ~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~~l~~-l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~ 287 (714)
+..+..+++|++|++ +|. +++..+.. ....+++|++|+++++. +++. .+
T Consensus 96 ---~~~~~~l~~L~~L~L~~n~--------l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~----~~------------- 146 (455)
T 3v47_A 96 ---TGAFNGLANLEVLTLTQCN--------LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKI----QP------------- 146 (455)
T ss_dssp ---TTTTTTCTTCCEEECTTSC--------CBTHHHHSSTTTTCTTCCEEECCSSB-CCSC----CC-------------
T ss_pred ---hhhccCcccCCEEeCCCCC--------CCccccCcccccCcccCCEEECCCCc-cCcc----Cc-------------
Confidence 112345677777777 443 33222221 12356777777777542 2211 00
Q ss_pred cCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHh-ccCCCccEEEeccccCccccCCCcch-------HHHhcCCc
Q 044164 288 ISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLN-SKCPRLKSLKLGQVHGICREIDSSMP-------AAGVALWK 359 (714)
Q Consensus 288 it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~-~~~~~L~~L~L~~~~~~c~~i~~~~~-------l~~l~~~~ 359 (714)
..++..+++|++|+++++. ++... ...+. -..++|+.|++.++. +.+..+ ...+..++
T Consensus 147 ------~~~~~~l~~L~~L~L~~n~-l~~~~--~~~l~~l~~~~L~~L~l~~n~-----l~~~~~~~~~~~~~~~~~~~~ 212 (455)
T 3v47_A 147 ------ASFFLNMRRFHVLDLTFNK-VKSIC--EEDLLNFQGKHFTLLRLSSIT-----LQDMNEYWLGWEKCGNPFKNT 212 (455)
T ss_dssp ------CGGGGGCTTCCEEECTTCC-BSCCC--TTTSGGGTTCEEEEEECTTCB-----CTTCSTTCTTHHHHCCTTTTC
T ss_pred ------ccccCCCCcccEEeCCCCc-ccccC--hhhhhccccccccccccccCc-----ccccchhhccccccccccccc
Confidence 0124466778888887764 22211 01110 122567778777632 221110 00123557
Q ss_pred CcceeeeecCCCCCHHHHHHHHhc--CCCccEEEEeCCCCCCH---------HHHHHHHH-HcCCCeeEEEeeCCCCCCc
Q 044164 360 GLESLSIKNSADLTDSALIAISLG--CSNLTKFEVQGCNKITK---------MGMQIFAR-VLEKTLVDVRISSCKYLNT 427 (714)
Q Consensus 360 ~L~~L~L~~c~~ltd~~l~~l~~~--~~~L~~L~L~~c~~lt~---------~~l~~l~~-~~~~~L~~L~L~~C~~l~~ 427 (714)
+|+.|++++|. +++.....+... .++|+.|++++|..... .....+.. .. ++|++|++++|...
T Consensus 213 ~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~-- 288 (455)
T 3v47_A 213 SITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA-SGVKTCDLSKSKIF-- 288 (455)
T ss_dssp EEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTT-SCCCEEECCSSCCC--
T ss_pred eeeeEecCCCc-ccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccc-cCceEEEecCcccc--
Confidence 88888888876 666555555432 37888888887742110 00000000 12 67899999887654
Q ss_pred hhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCC
Q 044164 428 VCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNG 507 (714)
Q Consensus 428 ~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (714)
+ ..+.....+++|++|+++.+.++...+..+
T Consensus 289 ~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------------------------------------------------ 319 (455)
T 3v47_A 289 A-LLKSVFSHFTDLEQLTLAQNEINKIDDNAF------------------------------------------------ 319 (455)
T ss_dssp E-ECTTTTTTCTTCCEEECTTSCCCEECTTTT------------------------------------------------
T ss_pred c-cchhhcccCCCCCEEECCCCcccccChhHh------------------------------------------------
Confidence 1 122223456888999885444444444444
Q ss_pred CCccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccC
Q 044164 508 FSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCG 587 (714)
Q Consensus 508 ~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~ 587 (714)
..+++|++|.+ .+..++.++...+.++++|+.|+++ ++......|. .+..+++|+.++|+.|
T Consensus 320 -----~~l~~L~~L~L---s~N~l~~~~~~~~~~l~~L~~L~Ls--~N~l~~~~~~--------~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 320 -----WGLTHLLKLNL---SQNFLGSIDSRMFENLDKLEVLDLS--YNHIRALGDQ--------SFLGLPNLKELALDTN 381 (455)
T ss_dssp -----TTCTTCCEEEC---CSSCCCEECGGGGTTCTTCCEEECC--SSCCCEECTT--------TTTTCTTCCEEECCSS
T ss_pred -----cCcccCCEEEC---CCCccCCcChhHhcCcccCCEEECC--CCcccccChh--------hccccccccEEECCCC
Confidence 45678888888 4555677766668889999999996 3322222233 6788999999999999
Q ss_pred ccccccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchh
Q 044164 588 DAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAA 642 (714)
Q Consensus 588 ~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 642 (714)
.+++.. |..+..++.++.+++.+ |.+++..|..
T Consensus 382 ~l~~~~---~~~~~~l~~L~~L~l~~-------------------N~l~~~~~~~ 414 (455)
T 3v47_A 382 QLKSVP---DGIFDRLTSLQKIWLHT-------------------NPWDCSCPRI 414 (455)
T ss_dssp CCSCCC---TTTTTTCTTCCEEECCS-------------------SCBCCCTTTT
T ss_pred ccccCC---HhHhccCCcccEEEccC-------------------CCcccCCCcc
Confidence 988744 44556788888888888 8998888865
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.72 E-value=6.3e-19 Score=210.74 Aligned_cols=487 Identities=16% Similarity=0.115 Sum_probs=222.9
Q ss_pred cccccccccCcceeeeccccCCCCCCccccCCCchhHHHHHhhhCCCeeEEEEeecCh-hhH-HHHcccCCCCCEEEEec
Q 044164 63 DLNQVPVCFQAINNLDLSCLSPWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYARSP-LTL-HFLAPEWPKLSHVKLVR 140 (714)
Q Consensus 63 ~l~~l~~~f~~L~~L~Ls~~~~~~~~~l~~~~~~~l~~~~L~~~~p~L~~L~l~~~~~-~~l-~~l~~~~p~L~~L~L~~ 140 (714)
.+..+|.-.+++++|+++...- ..+. +..+ ..+++|+.|++++... ..+ +.....+++|+.|++.+
T Consensus 15 ~L~~vP~lp~~l~~LdLs~N~i------~~i~-----~~~~-~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 15 NLTQVPQVLNTTERLLLSFNYI------RTVT-----ASSF-PFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp CSSCCCSSCTTCCEEEEESCCC------CEEC-----SSSC-SSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred CCCCCCCCCCCcCEEECCCCcC------CccC-----hhHC-cccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 4445555446788888875320 0000 0011 4567788888865421 111 12225677888888876
Q ss_pred ccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHH--HHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhh
Q 044164 141 WHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTA--FELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSA 218 (714)
Q Consensus 141 ~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~--l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~ 218 (714)
+..... ....+.++++|++|+|+++... +..+.. +.. +++|++|++++|.. .++ .......+
T Consensus 83 N~l~~~------~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~----L~~L~~L~Ls~N~l--~~~---~~~~~~~~ 146 (844)
T 3j0a_A 83 SKIYFL------HPDAFQGLFHLFELRLYFCGLS-DAVLKDGYFRN----LKALTRLDLSKNQI--RSL---YLHPSFGK 146 (844)
T ss_dssp CCCCEE------CTTSSCSCSSCCCEECTTCCCS-SCCSTTCCCSS----CSSCCEEEEESCCC--CCC---CCCGGGGT
T ss_pred CcCccc------CHhHccCCcccCEeeCcCCCCC-cccccCccccc----cCCCCEEECCCCcc--ccc---ccchhHhh
Confidence 642210 1123566778888888877633 222111 222 34888888887532 111 11123456
Q ss_pred CCCCcEEEe-eeecccccccccCHHHHHHHHhhCCCCceEEeccccCcCCCC---CCCC----CCCCCCCCCccCCCcCH
Q 044164 219 CPNLSQLLA-TCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNS---SRAD----PNNNDEGYASEDARISP 290 (714)
Q Consensus 219 ~~~L~~L~L-~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~---~~~~----~~~~l~~l~~~~~~it~ 290 (714)
+++|++|++ ++.+. .+....+..+.. ++|+.|++.++. +.+.. +... ....++.+....+.++.
T Consensus 147 L~~L~~L~Ls~N~i~-----~~~~~~l~~l~~--~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 218 (844)
T 3j0a_A 147 LNSLKSIDFSSNQIF-----LVCEHELEPLQG--KTLSFFSLAANS-LYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218 (844)
T ss_dssp CSSCCEEEEESSCCC-----CCCSGGGHHHHH--CSSCCCEECCSB-SCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred CCCCCEEECCCCcCC-----eeCHHHcccccC--CccceEECCCCc-cccccccchhhcCCccccCceeEEecCCCcCch
Confidence 788888888 44321 111223333311 566666665442 21110 0000 00001111111111111
Q ss_pred HHHHHH-----------------------------------Hhc--CCcccceecccccCcCCChHHHHHHhccCCCccE
Q 044164 291 TALGDF-----------------------------------FES--LPLLEELVLDVGNNVRDTWPALELLNSKCPRLKS 333 (714)
Q Consensus 291 ~~l~~l-----------------------------------~~~--~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~ 333 (714)
.....+ +.+ +++|+.|+++++. ++.. .......+++|+.
T Consensus 219 ~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~---~~~~~~~l~~L~~ 294 (844)
T 3j0a_A 219 DITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF-VFSL---NSRVFETLKDLKV 294 (844)
T ss_dssp TTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC-CCEE---CSCCSSSCCCCCE
T ss_pred hHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc-cccc---ChhhhhcCCCCCE
Confidence 110000 111 2567777776653 2111 0112355677777
Q ss_pred EEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCC
Q 044164 334 LKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKT 413 (714)
Q Consensus 334 L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~ 413 (714)
|++.+ +.++... ...+..+++|+.|++++|. ++... .....++++|+.|++++|. ++......+ ..+ ++
T Consensus 295 L~L~~-----n~i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N~-i~~~~~~~~-~~l-~~ 363 (844)
T 3j0a_A 295 LNLAY-----NKINKIA-DEAFYGLDNLQVLNLSYNL-LGELY-SSNFYGLPKVAYIDLQKNH-IAIIQDQTF-KFL-EK 363 (844)
T ss_dssp EEEES-----CCCCEEC-TTTTTTCSSCCEEEEESCC-CSCCC-SCSCSSCTTCCEEECCSCC-CCCCCSSCS-CSC-CC
T ss_pred EECCC-----CcCCCCC-hHHhcCCCCCCEEECCCCC-CCccC-HHHhcCCCCCCEEECCCCC-CCccChhhh-cCC-CC
Confidence 77766 2233221 2345666777777777664 32111 1112236677777777665 332211111 223 67
Q ss_pred eeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhhhcChHHHh
Q 044164 414 LVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEAS 493 (714)
Q Consensus 414 L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 493 (714)
|++|++++|... +. ..+++|+.|.++.+.++.. +.. ...+..++++.......+..+
T Consensus 364 L~~L~Ls~N~l~-~i-------~~~~~L~~L~l~~N~l~~l-~~~--------------~~~l~~L~ls~N~l~~l~~~~ 420 (844)
T 3j0a_A 364 LQTLDLRDNALT-TI-------HFIPSIPDIFLSGNKLVTL-PKI--------------NLTANLIHLSENRLENLDILY 420 (844)
T ss_dssp CCEEEEETCCSC-CC-------SSCCSCSEEEEESCCCCCC-CCC--------------CTTCCEEECCSCCCCSSTTHH
T ss_pred CCEEECCCCCCC-cc-------cCCCCcchhccCCCCcccc-ccc--------------ccccceeecccCccccCchhh
Confidence 777777776533 11 1256677777743332211 000 111222222221100000000
Q ss_pred HhhhcccccCCCCCCCccccccccccceeeehhcccccccccc-cCCCCCCCcceEEEEEeccccCCCCccccccccccc
Q 044164 494 LKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRL-AGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNS 572 (714)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~-~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~ 572 (714)
.-..+++|+.|.+ .+..++..+. ..+..+++|+.|.++ +|-.....+ .......
T Consensus 421 -----------------~~~~l~~L~~L~L---s~N~l~~~~~~~~~~~~~~L~~L~Ls--~N~l~~~~~---~~~~~~~ 475 (844)
T 3j0a_A 421 -----------------FLLRVPHLQILIL---NQNRFSSCSGDQTPSENPSLEQLFLG--ENMLQLAWE---TELCWDV 475 (844)
T ss_dssp -----------------HHTTCTTCCEEEE---ESCCCCCCCSSSSSCSCTTCCBCEEE--SCCCSSSCC---SCCCSSC
T ss_pred -----------------hhhcCCccceeeC---CCCcccccccccccccCCccccccCC--CCccccccc---cccchhh
Confidence 0024567777776 3333333222 123456777777775 322221100 1122234
Q ss_pred ccCCccccccccccCccccccccCCCCCccchhhHHhhhcccccc-ccccCCCCCCC----CccccccccCcchhhhHHH
Q 044164 573 LVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENL-NLKELNYWPPQ----DMDVHQRSLSLPAAGLLSQ 647 (714)
Q Consensus 573 l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l-~l~~l~~~~~~----~~~~~~~~~~~~~~~~~~~ 647 (714)
+.++++|+.++|+.|.++|.. |..+..++.++.++|.+ ..| ++..-.+ +++ |-..|++++..|.. +
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~-~~~L~~L~Ls~N~l~~~~~~~--~-- 546 (844)
T 3j0a_A 476 FEGLSHLQVLYLNHNYLNSLP---PGVFSHLTALRGLSLNS-NRLTVLSHNDL-PANLEILDISRNQLLAPNPDV--F-- 546 (844)
T ss_dssp SSCBCCEECCCCCHHHHTTCC---TTSSSSCCSCSEEEEES-CCCSSCCCCCC-CSCCCEEEEEEECCCCCCSCC--C--
T ss_pred hcCcccccEEECCCCcccccC---hhHccchhhhheeECCC-CCCCccChhhh-hccccEEECCCCcCCCCChhH--h--
Confidence 666777777777777777655 55566677777776665 111 1111000 000 11236777777755 3
Q ss_pred hhhhhheeecc
Q 044164 648 CRSLRKLFIHG 658 (714)
Q Consensus 648 ~~~l~~l~~~~ 658 (714)
.+|++|+++|
T Consensus 547 -~~L~~l~l~~ 556 (844)
T 3j0a_A 547 -VSLSVLDITH 556 (844)
T ss_dssp -SSCCEEEEEE
T ss_pred -CCcCEEEecC
Confidence 4788888884
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.71 E-value=3.9e-18 Score=203.89 Aligned_cols=79 Identities=11% Similarity=0.128 Sum_probs=55.1
Q ss_pred ccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccccc
Q 044164 514 TWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFA 593 (714)
Q Consensus 514 ~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~ 593 (714)
.+++|+.|.+ .+..++.++...+.++++|++|+++ +|......|. .+. ++|+.++|+.|.++|..
T Consensus 478 ~l~~L~~L~L---s~N~l~~~~~~~~~~l~~L~~L~Ls--~N~l~~l~~~--------~~~--~~L~~L~Ls~N~l~~~~ 542 (844)
T 3j0a_A 478 GLSHLQVLYL---NHNYLNSLPPGVFSHLTALRGLSLN--SNRLTVLSHN--------DLP--ANLEILDISRNQLLAPN 542 (844)
T ss_dssp CBCCEECCCC---CHHHHTTCCTTSSSSCCSCSEEEEE--SCCCSSCCCC--------CCC--SCCCEEEEEEECCCCCC
T ss_pred CcccccEEEC---CCCcccccChhHccchhhhheeECC--CCCCCccChh--------hhh--ccccEEECCCCcCCCCC
Confidence 4578888887 4556677777778899999999997 4433332222 222 78999999999999876
Q ss_pred ccCCCCCccchhhHHhhhcc
Q 044164 594 LTAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 594 ~~~p~~~~~l~~~~~~~l~~ 613 (714)
|..+. .++.+++.|
T Consensus 543 ---~~~~~---~L~~l~l~~ 556 (844)
T 3j0a_A 543 ---PDVFV---SLSVLDITH 556 (844)
T ss_dssp ---SCCCS---SCCEEEEEE
T ss_pred ---hhHhC---CcCEEEecC
Confidence 65443 455667777
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.70 E-value=3.4e-18 Score=195.07 Aligned_cols=126 Identities=20% Similarity=0.116 Sum_probs=72.1
Q ss_pred CCCeeEEEEeecChhhHH-HHcccCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhc
Q 044164 107 FPSVVSLTIYARSPLTLH-FLAPEWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELY 185 (714)
Q Consensus 107 ~p~L~~L~l~~~~~~~l~-~l~~~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l 185 (714)
+++++.|++.+..-..+. .....+++|++|++.++.... + ....+..+++|++|+|+++... .++.. .
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-~-----~~~~~~~l~~L~~L~Ls~N~l~--~lp~~--~- 119 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS-L-----DFHVFLFNQDLEYLDVSHNRLQ--NISCC--P- 119 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCE-E-----CTTTTTTCTTCCEEECTTSCCC--EECSC--C-
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCc-C-----CHHHhCCCCCCCEEECCCCcCC--ccCcc--c-
Confidence 367888888765443332 122567888888888764211 1 0123566788888888887632 23322 2
Q ss_pred hhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEeeeecccccccccCHHHHHHHHhhCCCC--ceEEeccc
Q 044164 186 PSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGFVGDETLLSIASNCPRL--SLLHLADS 262 (714)
Q Consensus 186 ~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~i~~~~l~~l~~~~~~L--~~L~L~~c 262 (714)
+++|++|++++|.. .++. ++....++++|++|+++.+ .++...+ ..+++| ++|++.++
T Consensus 120 ---l~~L~~L~Ls~N~l--~~l~---~p~~~~~l~~L~~L~L~~n-------~l~~~~~----~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 120 ---MASLRHLDLSFNDF--DVLP---VCKEFGNLTKLTFLGLSAA-------KFRQLDL----LPVAHLHLSCILLDLV 179 (562)
T ss_dssp ---CTTCSEEECCSSCC--SBCC---CCGGGGGCTTCCEEEEECS-------BCCTTTT----GGGTTSCEEEEEEEES
T ss_pred ---cccCCEEECCCCCc--cccC---chHhhcccCcccEEecCCC-------ccccCch----hhhhhceeeEEEeecc
Confidence 34888888887532 1111 1123456788888888333 2333222 233445 88888765
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.69 E-value=1.2e-16 Score=170.69 Aligned_cols=209 Identities=19% Similarity=0.193 Sum_probs=115.4
Q ss_pred hcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccccc
Q 044164 158 EHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFL 236 (714)
Q Consensus 158 ~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~ 236 (714)
..+++|++|+++++.... ++. +.. +++|++|++++|.. .++. . ...+++|++|++ +|.
T Consensus 41 ~~l~~L~~L~l~~~~i~~--~~~-~~~----~~~L~~L~l~~n~i--~~~~-----~-~~~l~~L~~L~L~~n~------ 99 (347)
T 4fmz_A 41 EELESITKLVVAGEKVAS--IQG-IEY----LTNLEYLNLNGNQI--TDIS-----P-LSNLVKLTNLYIGTNK------ 99 (347)
T ss_dssp HHHTTCSEEECCSSCCCC--CTT-GGG----CTTCCEEECCSSCC--CCCG-----G-GTTCTTCCEEECCSSC------
T ss_pred hhcccccEEEEeCCcccc--chh-hhh----cCCccEEEccCCcc--ccch-----h-hhcCCcCCEEEccCCc------
Confidence 456788888888876432 221 333 34888888887422 2221 1 456778888888 443
Q ss_pred cccCHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCC
Q 044164 237 GFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRD 316 (714)
Q Consensus 237 ~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~ 316 (714)
+++ +.. ...+++|++|+++++. +++. . . +..+++|+.|++++|..+..
T Consensus 100 --i~~--~~~-~~~l~~L~~L~l~~n~-i~~~--------------------~-----~-~~~l~~L~~L~l~~n~~~~~ 147 (347)
T 4fmz_A 100 --ITD--ISA-LQNLTNLRELYLNEDN-ISDI--------------------S-----P-LANLTKMYSLNLGANHNLSD 147 (347)
T ss_dssp --CCC--CGG-GTTCTTCSEEECTTSC-CCCC--------------------G-----G-GTTCTTCCEEECTTCTTCCC
T ss_pred --ccC--chH-HcCCCcCCEEECcCCc-ccCc--------------------h-----h-hccCCceeEEECCCCCCccc
Confidence 221 111 2466777777777542 2111 0 0 34567777777777765544
Q ss_pred ChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCC
Q 044164 317 TWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCN 396 (714)
Q Consensus 317 ~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~ 396 (714)
.. . ...+++|++|++.++ .+... ..++.+++|+.|++++|. +++.. . ...+++|+.|++++|.
T Consensus 148 ~~----~-~~~l~~L~~L~l~~~-----~~~~~---~~~~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~n~ 210 (347)
T 4fmz_A 148 LS----P-LSNMTGLNYLTVTES-----KVKDV---TPIANLTDLYSLSLNYNQ-IEDIS--P-LASLTSLHYFTAYVNQ 210 (347)
T ss_dssp CG----G-GTTCTTCCEEECCSS-----CCCCC---GGGGGCTTCSEEECTTSC-CCCCG--G-GGGCTTCCEEECCSSC
T ss_pred cc----c-hhhCCCCcEEEecCC-----CcCCc---hhhccCCCCCEEEccCCc-ccccc--c-ccCCCccceeecccCC
Confidence 32 1 366777777777762 22322 125667777777777764 33221 1 2346777777777665
Q ss_pred CCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEE
Q 044164 397 KITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHV 446 (714)
Q Consensus 397 ~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l 446 (714)
+++... ...+ ++|++|++++|.... .. . ...+++|++|++
T Consensus 211 -l~~~~~---~~~~-~~L~~L~l~~n~l~~-~~---~-~~~l~~L~~L~l 250 (347)
T 4fmz_A 211 -ITDITP---VANM-TRLNSLKIGNNKITD-LS---P-LANLSQLTWLEI 250 (347)
T ss_dssp -CCCCGG---GGGC-TTCCEEECCSSCCCC-CG---G-GTTCTTCCEEEC
T ss_pred -CCCCch---hhcC-CcCCEEEccCCccCC-Cc---c-hhcCCCCCEEEC
Confidence 333221 2233 677777777765431 11 1 334566666666
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.67 E-value=2.3e-16 Score=168.42 Aligned_cols=231 Identities=16% Similarity=0.133 Sum_probs=160.2
Q ss_pred cCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCC
Q 044164 129 EWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYK 208 (714)
Q Consensus 129 ~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~ 208 (714)
.+++|++|.+.++.... + . .+..+++|++|+++++.... ++. +.. +++|++|++++|.. ..+
T Consensus 42 ~l~~L~~L~l~~~~i~~-~------~-~~~~~~~L~~L~l~~n~i~~--~~~-~~~----l~~L~~L~L~~n~i--~~~- 103 (347)
T 4fmz_A 42 ELESITKLVVAGEKVAS-I------Q-GIEYLTNLEYLNLNGNQITD--ISP-LSN----LVKLTNLYIGTNKI--TDI- 103 (347)
T ss_dssp HHTTCSEEECCSSCCCC-C------T-TGGGCTTCCEEECCSSCCCC--CGG-GTT----CTTCCEEECCSSCC--CCC-
T ss_pred hcccccEEEEeCCcccc-c------h-hhhhcCCccEEEccCCcccc--chh-hhc----CCcCCEEEccCCcc--cCc-
Confidence 57889999999874321 1 1 26779999999999987432 222 333 45999999998532 222
Q ss_pred HHHHHHHHhhCCCCcEEEe-eeecccccccccCHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCC
Q 044164 209 SHELLSITSACPNLSQLLA-TCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDAR 287 (714)
Q Consensus 209 ~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~ 287 (714)
. ....+++|++|++ +|. +++... ...+++|++|++++|..+...
T Consensus 104 ----~-~~~~l~~L~~L~l~~n~--------i~~~~~---~~~l~~L~~L~l~~n~~~~~~------------------- 148 (347)
T 4fmz_A 104 ----S-ALQNLTNLRELYLNEDN--------ISDISP---LANLTKMYSLNLGANHNLSDL------------------- 148 (347)
T ss_dssp ----G-GGTTCTTCSEEECTTSC--------CCCCGG---GTTCTTCCEEECTTCTTCCCC-------------------
T ss_pred ----h-HHcCCCcCCEEECcCCc--------ccCchh---hccCCceeEEECCCCCCcccc-------------------
Confidence 1 2567999999999 554 222111 357899999999988544322
Q ss_pred cCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeee
Q 044164 288 ISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIK 367 (714)
Q Consensus 288 it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~ 367 (714)
..+..+++|+.|++++|. +.... . ...+++|++|++.++ .+.+. ..+..+++|+.|+++
T Consensus 149 -------~~~~~l~~L~~L~l~~~~-~~~~~----~-~~~l~~L~~L~l~~n-----~l~~~---~~~~~l~~L~~L~l~ 207 (347)
T 4fmz_A 149 -------SPLSNMTGLNYLTVTESK-VKDVT----P-IANLTDLYSLSLNYN-----QIEDI---SPLASLTSLHYFTAY 207 (347)
T ss_dssp -------GGGTTCTTCCEEECCSSC-CCCCG----G-GGGCTTCSEEECTTS-----CCCCC---GGGGGCTTCCEEECC
T ss_pred -------cchhhCCCCcEEEecCCC-cCCch----h-hccCCCCCEEEccCC-----ccccc---ccccCCCccceeecc
Confidence 014578999999999985 33332 1 478999999999983 34443 237789999999999
Q ss_pred cCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEe
Q 044164 368 NSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVD 447 (714)
Q Consensus 368 ~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~ 447 (714)
+|. +++... ...+++|++|++++|. +++... ...+ ++|++|++++|... +. .. ...+++|++|+++
T Consensus 208 ~n~-l~~~~~---~~~~~~L~~L~l~~n~-l~~~~~---~~~l-~~L~~L~l~~n~l~-~~---~~-~~~l~~L~~L~l~ 273 (347)
T 4fmz_A 208 VNQ-ITDITP---VANMTRLNSLKIGNNK-ITDLSP---LANL-SQLTWLEIGTNQIS-DI---NA-VKDLTKLKMLNVG 273 (347)
T ss_dssp SSC-CCCCGG---GGGCTTCCEEECCSSC-CCCCGG---GTTC-TTCCEEECCSSCCC-CC---GG-GTTCTTCCEEECC
T ss_pred cCC-CCCCch---hhcCCcCCEEEccCCc-cCCCcc---hhcC-CCCCEEECCCCccC-CC---hh-HhcCCCcCEEEcc
Confidence 986 443321 3458999999999998 554332 3445 99999999998654 21 22 2456889999884
No 36
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=2e-15 Score=163.72 Aligned_cols=271 Identities=15% Similarity=0.159 Sum_probs=170.3
Q ss_pred ccCCCCCEEEEecccccCCCCChHH---HHHHHhcCCCCceEEecCccc--cCCChHHHHHhch---hccCCCcEEEecc
Q 044164 128 PEWPKLSHVKLVRWHQRFNAPIGYD---FFALFEHCPSLSSIDLSHFYC--WTEDLPTAFELYP---SIAASLSHLNLLV 199 (714)
Q Consensus 128 ~~~p~L~~L~L~~~~~~~~~~~~~~---l~~~~~~~~~L~~L~Ls~~~~--~~~~~~~~l~~l~---~~~~~L~~L~L~~ 199 (714)
..+++|++|++.++... ... +...+..+++|++|+|+++.. ..+.++..+..+. ..+++|++|++++
T Consensus 29 ~~~~~L~~L~L~~n~i~-----~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIG-----TEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp HHCSCCCEEECTTSEEC-----HHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred hcCCCccEEECCCCCCC-----HHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 45677888888776321 222 233355688888888887632 2233344332221 1345888888887
Q ss_pred CccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccccccccCHHHHHHHHh---hC---------CCCceEEeccccCcC
Q 044164 200 GHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLGFVGDETLLSIAS---NC---------PRLSLLHLADSTALS 266 (714)
Q Consensus 200 n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~~l~~l~~---~~---------~~L~~L~L~~c~~l~ 266 (714)
|.. .......+...+..+++|++|++ +|. +++.+...++. .+ ++|++|+++++
T Consensus 104 n~l--~~~~~~~l~~~l~~~~~L~~L~L~~n~--------l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n---- 169 (386)
T 2ca6_A 104 NAF--GPTAQEPLIDFLSKHTPLEHLYLHNNG--------LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN---- 169 (386)
T ss_dssp CCC--CTTTHHHHHHHHHHCTTCCEEECCSSC--------CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS----
T ss_pred CcC--CHHHHHHHHHHHHhCCCCCEEECcCCC--------CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC----
Confidence 532 11222345556677888888888 443 55444444432 23 88999998765
Q ss_pred CCCCCCCCCCCCCCCCccCCCcCHHHHH---HHHhcCCcccceecccccCcCCChH-HHHH-HhccCCCccEEEeccccC
Q 044164 267 SNSSRADPNNNDEGYASEDARISPTALG---DFFESLPLLEELVLDVGNNVRDTWP-ALEL-LNSKCPRLKSLKLGQVHG 341 (714)
Q Consensus 267 ~~~~~~~~~~~l~~l~~~~~~it~~~l~---~l~~~~p~L~~L~L~~c~~l~~~~~-~l~~-l~~~~~~L~~L~L~~~~~ 341 (714)
.+++.++. ..+..+++|++|++++| .+++.+. .+.. ....+++|++|+|+++
T Consensus 170 --------------------~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-- 226 (386)
T 2ca6_A 170 --------------------RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-- 226 (386)
T ss_dssp --------------------CCTGGGHHHHHHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS--
T ss_pred --------------------CCCcHHHHHHHHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC--
Confidence 23333444 44557889999999887 3433221 0111 3467889999999873
Q ss_pred ccccCCCcc---hHHHhcCCcCcceeeeecCCCCCHHHHHHHHhc-----CCCccEEEEeCCCCCCHHHHHHHH----HH
Q 044164 342 ICREIDSSM---PAAGVALWKGLESLSIKNSADLTDSALIAISLG-----CSNLTKFEVQGCNKITKMGMQIFA----RV 409 (714)
Q Consensus 342 ~c~~i~~~~---~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~-----~~~L~~L~L~~c~~lt~~~l~~l~----~~ 409 (714)
.+++.+ ....+..+++|+.|+|++|. +++.+...++.. +++|+.|+|++|. +++.|+..+. ..
T Consensus 227 ---~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~ 301 (386)
T 2ca6_A 227 ---TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEK 301 (386)
T ss_dssp ---CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHH
T ss_pred ---CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhc
Confidence 343211 12356788999999999887 888876665542 7889999999988 8887655554 34
Q ss_pred cCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEE
Q 044164 410 LEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHV 446 (714)
Q Consensus 410 ~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l 446 (714)
+ ++|++|++++|+.......+..+...+++++.+++
T Consensus 302 l-~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l 337 (386)
T 2ca6_A 302 M-PDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGEL 337 (386)
T ss_dssp C-TTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEE
T ss_pred C-CCceEEEccCCcCCcchhHHHHHHHHhhhcCcchh
Confidence 5 89999999998865333225566665666665555
No 37
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.63 E-value=1.6e-16 Score=181.34 Aligned_cols=424 Identities=13% Similarity=0.069 Sum_probs=233.9
Q ss_pred cccc-ccCcceeeeccccCCCCCCccccCCCchhHHHHHhhhCCCeeEEEEeecChhhH-HHHcccCCCCCEEEEecccc
Q 044164 66 QVPV-CFQAINNLDLSCLSPWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYARSPLTL-HFLAPEWPKLSHVKLVRWHQ 143 (714)
Q Consensus 66 ~l~~-~f~~L~~L~Ls~~~~~~~~~l~~~~~~~l~~~~L~~~~p~L~~L~l~~~~~~~l-~~l~~~~p~L~~L~L~~~~~ 143 (714)
.+|. -+++++.|+++... +..+. +..+ ..+++|+.|++++..-..+ +.....+++|++|++++...
T Consensus 45 ~ip~~~~~~L~~L~Ls~N~------i~~~~-----~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 45 HVPKDLPPRTKALSLSQNS------ISELR-----MPDI-SFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp SCCTTSCTTCCEEECCSSC------CCCCC-----GGGT-TTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cCCCCCCCCcCEEECCCCC------ccccC-----hhhh-ccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC
Confidence 3444 23789999997532 11110 1112 5788999999986544433 22235789999999997752
Q ss_pred cCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCC-
Q 044164 144 RFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNL- 222 (714)
Q Consensus 144 ~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L- 222 (714)
..++.. .+++|++|+++++....-..+..+..++ +|++|++++|.. +... ...+++|
T Consensus 113 -~~lp~~--------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~----~L~~L~L~~n~l-----~~~~----~~~l~~L~ 170 (562)
T 3a79_B 113 -QNISCC--------PMASLRHLDLSFNDFDVLPVCKEFGNLT----KLTFLGLSAAKF-----RQLD----LLPVAHLH 170 (562)
T ss_dssp -CEECSC--------CCTTCSEEECCSSCCSBCCCCGGGGGCT----TCCEEEEECSBC-----CTTT----TGGGTTSC
T ss_pred -CccCcc--------ccccCCEEECCCCCccccCchHhhcccC----cccEEecCCCcc-----ccCc----hhhhhhce
Confidence 222211 6899999999999854434444455555 999999998643 2211 2345666
Q ss_pred -cEEEe-eeec--ccccccccCHH-----------------HHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCC
Q 044164 223 -SQLLA-TCVF--DHRFLGFVGDE-----------------TLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGY 281 (714)
Q Consensus 223 -~~L~L-~c~~--~~~~~~~i~~~-----------------~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l 281 (714)
+.|++ .+.+ .......+..- ........+++|+.|++.+.
T Consensus 171 L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n------------------- 231 (562)
T 3a79_B 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN------------------- 231 (562)
T ss_dssp EEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECC-------------------
T ss_pred eeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEeccccc-------------------
Confidence 99999 5542 11000000000 00000001223333333321
Q ss_pred CccCCCcC---HHHHHHHHhcCCcccceecccccCcCCChHHHHHHh--ccCCCccEEEeccccCccccCCCcchHHHh-
Q 044164 282 ASEDARIS---PTALGDFFESLPLLEELVLDVGNNVRDTWPALELLN--SKCPRLKSLKLGQVHGICREIDSSMPAAGV- 355 (714)
Q Consensus 282 ~~~~~~it---~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~--~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l- 355 (714)
... -.+....+...++|+.|++..+. + .+..+..+. ...++|++|++.++. ++...+ ..+
T Consensus 232 -----~~~~~~l~~~~~~l~~l~~L~~L~L~~~~-l--~~~~~~~~~~~~~~~~L~~L~l~~n~-----l~~~ip-~~~~ 297 (562)
T 3a79_B 232 -----DENCQRLMTFLSELTRGPTLLNVTLQHIE-T--TWKCSVKLFQFFWPRPVEYLNIYNLT-----ITERID-REEF 297 (562)
T ss_dssp -----STTHHHHHHHHHHHHSCSSCEEEEEEEEE-E--CHHHHHHHHHHHTTSSEEEEEEEEEE-----ECSCCC-CCCC
T ss_pred -----ccccchHHHHHHHHhccCcceEEEecCCc-C--cHHHHHHHHHhhhcccccEEEEeccE-----eecccc-chhh
Confidence 000 01222334566777777776653 2 221122111 233478888887732 121100 111
Q ss_pred ----cCCcCcceeeeecCC-CCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhH
Q 044164 356 ----ALWKGLESLSIKNSA-DLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCS 430 (714)
Q Consensus 356 ----~~~~~L~~L~L~~c~-~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~ 430 (714)
..++.|+.+++..+. .+.+..+..+.. .++|+.|++++|. ++.... ...+ ++|++|++++|... +.
T Consensus 298 ~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~-~~~L~~L~l~~n~-~~~~~~---~~~l-~~L~~L~l~~n~l~--~~- 368 (562)
T 3a79_B 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFA-EMNIKMLSISDTP-FIHMVC---PPSP-SSFTFLNFTQNVFT--DS- 368 (562)
T ss_dssp CCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH-TCCCSEEEEESSC-CCCCCC---CSSC-CCCCEEECCSSCCC--TT-
T ss_pred hcccccchheehhhcccceeecChhhhhhhhc-cCcceEEEccCCC-cccccC---ccCC-CCceEEECCCCccc--cc-
Confidence 334444444444432 233444444433 3678888888876 332110 0233 78888888887643 21
Q ss_pred HHHHHhcCCCCCEEEEecccccccc--cchhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCC
Q 044164 431 LQALEPIRDRIQRLHVDCVWESVEQ--YSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGF 508 (714)
Q Consensus 431 l~~l~~~~~~L~~L~l~C~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (714)
.+.....+++|+.|+++.+.++... +..+
T Consensus 369 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------------------------------------- 399 (562)
T 3a79_B 369 VFQGCSTLKRLQTLILQRNGLKNFFKVALMT------------------------------------------------- 399 (562)
T ss_dssp TTTTCCSCSSCCEEECCSSCCCBTTHHHHTT-------------------------------------------------
T ss_pred hhhhhcccCCCCEEECCCCCcCCcccchhhh-------------------------------------------------
Confidence 1112234678888888433332211 1112
Q ss_pred Cccccccccccceeeehhccccccc-ccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccC
Q 044164 509 SSCSDTWTKLKYLSLWIAVGELLNP-IRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCG 587 (714)
Q Consensus 509 ~~~~~~~~~L~~L~l~~~~~~~l~~-l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~ 587 (714)
..+++|++|++ .+..++. ++...+..+++|++|.++ ++-.....|. .+. ++|+.++|+.|
T Consensus 400 ----~~l~~L~~L~l---~~N~l~~~~~~~~~~~l~~L~~L~l~--~n~l~~~~~~--------~l~--~~L~~L~L~~N 460 (562)
T 3a79_B 400 ----KNMSSLETLDV---SLNSLNSHAYDRTCAWAESILVLNLS--SNMLTGSVFR--------CLP--PKVKVLDLHNN 460 (562)
T ss_dssp ----TTCTTCCEEEC---TTSCCBSCCSSCCCCCCTTCCEEECC--SSCCCGGGGS--------SCC--TTCSEEECCSS
T ss_pred ----cCCCCCCEEEC---CCCcCCCccChhhhcCcccCCEEECC--CCCCCcchhh--------hhc--CcCCEEECCCC
Confidence 35678888887 4444444 666667788999999985 3322222222 222 68999999999
Q ss_pred ccccccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeecc
Q 044164 588 DAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHG 658 (714)
Q Consensus 588 ~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 658 (714)
.++ .+ |.+...++.++.+++.+ |+++ ++|+. .++++++|++|+++|
T Consensus 461 ~l~-~i---p~~~~~l~~L~~L~L~~-------------------N~l~-~l~~~-~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 461 RIM-SI---PKDVTHLQALQELNVAS-------------------NQLK-SVPDG-VFDRLTSLQYIWLHD 506 (562)
T ss_dssp CCC-CC---CTTTTSSCCCSEEECCS-------------------SCCC-CCCTT-STTTCTTCCCEECCS
T ss_pred cCc-cc---ChhhcCCCCCCEEECCC-------------------CCCC-CCCHH-HHhcCCCCCEEEecC
Confidence 876 23 77666888888888888 8888 67765 467889999999984
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.63 E-value=7.1e-17 Score=186.23 Aligned_cols=478 Identities=13% Similarity=0.018 Sum_probs=248.8
Q ss_pred EecccccccccccccC-cceeeeccccCCCCCCccccCCCchhHHHHHhhhCCCeeEEEEeecChhhHHH-HcccCCCCC
Q 044164 57 LRGNIRDLNQVPVCFQ-AINNLDLSCLSPWGHPLLESSSNPSLLAKLLSHAFPSVVSLTIYARSPLTLHF-LAPEWPKLS 134 (714)
Q Consensus 57 l~~~~~~l~~l~~~f~-~L~~L~Ls~~~~~~~~~l~~~~~~~l~~~~L~~~~p~L~~L~l~~~~~~~l~~-l~~~~p~L~ 134 (714)
+++....+..+|...| ++++|||+... +..+. +..+ ..+++|+.|+++...-..++. ....+++|+
T Consensus 36 ~~c~~~~l~~vP~~lp~~~~~LdLs~N~------i~~l~-----~~~f-~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~ 103 (635)
T 4g8a_A 36 YQCMELNFYKIPDNLPFSTKNLDLSFNP------LRHLG-----SYSF-FSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 103 (635)
T ss_dssp EECTTSCCSSCCSSSCTTCCEEECTTSC------CCEEC-----TTTT-TTCTTCCEEECTTCCCCEECTTTTTTCTTCC
T ss_pred EECCCCCcCccCCCCCcCCCEEEeeCCC------CCCCC-----HHHH-hCCCCCCEEECCCCcCCCcChhHhcCCCCCC
Confidence 4444456677777775 78999997532 11111 1112 567899999997654433321 225688999
Q ss_pred EEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHH
Q 044164 135 HVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLS 214 (714)
Q Consensus 135 ~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~ 214 (714)
+|+++++. +..++ ...+.++++|++|+|+++... +-.+..++. +++|++|++++|... ...++.
T Consensus 104 ~L~Ls~N~-l~~l~-----~~~f~~L~~L~~L~Ls~N~l~-~l~~~~~~~----L~~L~~L~Ls~N~l~-----~~~~~~ 167 (635)
T 4g8a_A 104 TLILTGNP-IQSLA-----LGAFSGLSSLQKLVAVETNLA-SLENFPIGH----LKTLKELNVAHNLIQ-----SFKLPE 167 (635)
T ss_dssp EEECTTCC-CCEEC-----GGGGTTCTTCCEEECTTSCCC-CSTTCCCTT----CTTCCEEECCSSCCC-----CCCCCG
T ss_pred EEEccCCc-CCCCC-----HHHhcCCCCCCEEECCCCcCC-CCChhhhhc----CcccCeeccccCccc-----cCCCch
Confidence 99998774 21111 124677899999999988632 211112333 449999999986431 111233
Q ss_pred HHhhCCCCcEEEe-eeecccccccccCHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHH
Q 044164 215 ITSACPNLSQLLA-TCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTAL 293 (714)
Q Consensus 215 l~~~~~~L~~L~L-~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l 293 (714)
....+++|++|++ ++.+. .+....+..+......+..++++.. .++...........+..+....+..+....
T Consensus 168 ~~~~l~~L~~L~L~~N~l~-----~~~~~~l~~L~~l~~~~~~~~ls~n-~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~ 241 (635)
T 4g8a_A 168 YFSNLTNLEHLDLSSNKIQ-----SIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 241 (635)
T ss_dssp GGGGCTTCCEEECCSSCCC-----EECGGGGHHHHTCTTCCCEEECTTC-CCCEECTTTTTTCEEEEEEEESCCSSHHHH
T ss_pred hhccchhhhhhcccCcccc-----ccccccccchhhhhhhhhhhhcccC-cccccCcccccchhhhhhhhhccccccccc
Confidence 4567899999999 54421 2233344444322222334444321 111110000000000000011111222222
Q ss_pred HHHHhcCCccc---------------------------------------------------------ceecccccCcCC
Q 044164 294 GDFFESLPLLE---------------------------------------------------------ELVLDVGNNVRD 316 (714)
Q Consensus 294 ~~l~~~~p~L~---------------------------------------------------------~L~L~~c~~l~~ 316 (714)
...+..++.++ .+.+..+.....
T Consensus 242 ~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 321 (635)
T 4g8a_A 242 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV 321 (635)
T ss_dssp HHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC
T ss_pred chhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc
Confidence 22222333322 222222110000
Q ss_pred ChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCC
Q 044164 317 TWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCN 396 (714)
Q Consensus 317 ~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~ 396 (714)
.. ...+.+|+.|++.++. +... ....++.|+.+.+..+..-.. .. ...+++|+.|+++++.
T Consensus 322 -----~~-~~~~~~L~~L~l~~~~-----~~~~----~~~~l~~L~~l~l~~n~~~~~---~~-~~~l~~L~~L~ls~n~ 382 (635)
T 4g8a_A 322 -----KD-FSYNFGWQHLELVNCK-----FGQF----PTLKLKSLKRLTFTSNKGGNA---FS-EVDLPSLEFLDLSRNG 382 (635)
T ss_dssp -----GG-GGSCCCCSEEEEESCE-----ESSC----CCCBCTTCCEEEEESCCSCCB---CC-CCBCTTCCEEECCSSC
T ss_pred -----cc-cccchhhhhhhccccc-----ccCc----CcccchhhhhcccccccCCCC---cc-cccccccccchhhccc
Confidence 01 1345567777776632 1111 112456788888876542110 01 1236888888888776
Q ss_pred CCCHHH-HHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEE-ecccccccccchhhhhhccCCCCccccC
Q 044164 397 KITKMG-MQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHV-DCVWESVEQYSQDHEIRGESSSSSHEAC 474 (714)
Q Consensus 397 ~lt~~~-l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l-~C~~~~~~~~~~l~~~~~~~~~~~~~~~ 474 (714)
. ...+ ........ .+|+.+++..+.... .......+++|+.+++ .+........... ....
T Consensus 383 l-~~~~~~~~~~~~~-~~L~~L~~~~~~~~~----~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~-----------~~l~ 445 (635)
T 4g8a_A 383 L-SFKGCCSQSDFGT-ISLKYLDLSFNGVIT----MSSNFLGLEQLEHLDFQHSNLKQMSEFSVF-----------LSLR 445 (635)
T ss_dssp C-BEEEECCHHHHSC-SCCCEEECCSCSEEE----ECSCCTTCTTCCEEECTTSEEESTTSSCTT-----------TTCT
T ss_pred c-ccccccccchhhh-hhhhhhhcccccccc----ccccccccccccchhhhhcccccccccccc-----------cccc
Confidence 3 2111 11111233 788888888775431 1111234678888888 3433222211111 0011
Q ss_pred CccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEec
Q 044164 475 GFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVG 554 (714)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~ 554 (714)
.+...+++..... ..... .-..+++|+.|.+. .....+......+..+++|+.|+++ +
T Consensus 446 ~l~~l~ls~n~l~--------------~~~~~----~~~~~~~L~~L~Ls--~N~~~~~~~~~~~~~l~~L~~L~Ls--~ 503 (635)
T 4g8a_A 446 NLIYLDISHTHTR--------------VAFNG----IFNGLSSLEVLKMA--GNSFQENFLPDIFTELRNLTFLDLS--Q 503 (635)
T ss_dssp TCCEEECTTSCCE--------------ECCTT----TTTTCTTCCEEECT--TCEEGGGEECSCCTTCTTCCEEECT--T
T ss_pred ccccccccccccc--------------ccccc----ccccchhhhhhhhh--hcccccccCchhhhhccccCEEECC--C
Confidence 1222222221000 00000 00235677777762 2233455555568889999999995 3
Q ss_pred cccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccc
Q 044164 555 DCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQ 634 (714)
Q Consensus 555 ~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~ 634 (714)
+-.....|. .+.++++|+.++|+.|.+++.. |..+..|+.++.++|.+ |+
T Consensus 504 N~L~~l~~~--------~f~~l~~L~~L~Ls~N~l~~l~---~~~~~~l~~L~~L~Ls~-------------------N~ 553 (635)
T 4g8a_A 504 CQLEQLSPT--------AFNSLSSLQVLNMSHNNFFSLD---TFPYKCLNSLQVLDYSL-------------------NH 553 (635)
T ss_dssp SCCCEECTT--------TTTTCTTCCEEECTTSCCCBCC---CGGGTTCTTCCEEECTT-------------------SC
T ss_pred CccCCcChH--------HHcCCCCCCEEECCCCcCCCCC---hhHHhCCCCCCEEECCC-------------------Cc
Confidence 322232233 6788999999999999988865 66677788888888888 99
Q ss_pred cccCcchhhhHHHh-hhhhheeecc
Q 044164 635 RSLSLPAAGLLSQC-RSLRKLFIHG 658 (714)
Q Consensus 635 ~~~~~~~~~~~~~~-~~l~~l~~~~ 658 (714)
+++..|++ ++++ ++|++|+++|
T Consensus 554 l~~~~~~~--l~~l~~~L~~L~L~~ 576 (635)
T 4g8a_A 554 IMTSKKQE--LQHFPSSLAFLNLTQ 576 (635)
T ss_dssp CCBCCSSC--TTCCCTTCCEEECTT
T ss_pred CCCCCHHH--HHhhhCcCCEEEeeC
Confidence 99988887 7776 6899999984
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.60 E-value=8.9e-17 Score=179.46 Aligned_cols=297 Identities=18% Similarity=0.163 Sum_probs=185.6
Q ss_pred CCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccccccccCHHHHHHHHhhCCCCceEEeccccCcCCC
Q 044164 190 ASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSN 268 (714)
Q Consensus 190 ~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~ 268 (714)
++++.|++++|.. .++.. ....++++|++|++ ++. ++...... ..++++|++|+++++ .++.+
T Consensus 32 ~~l~~L~L~~n~l--~~~~~----~~~~~l~~L~~L~L~~n~--------i~~~~~~~-~~~l~~L~~L~L~~n-~l~~~ 95 (477)
T 2id5_A 32 TETRLLDLGKNRI--KTLNQ----DEFASFPHLEELELNENI--------VSAVEPGA-FNNLFNLRTLGLRSN-RLKLI 95 (477)
T ss_dssp TTCSEEECCSSCC--CEECT----TTTTTCTTCCEEECTTSC--------CCEECTTT-TTTCTTCCEEECCSS-CCCSC
T ss_pred CCCcEEECCCCcc--ceECH----hHccCCCCCCEEECCCCc--------cCEeChhh-hhCCccCCEEECCCC-cCCcc
Confidence 4899999998632 22222 23457899999999 554 22211111 236789999999865 23222
Q ss_pred CCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCC
Q 044164 269 SSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDS 348 (714)
Q Consensus 269 ~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~ 348 (714)
+. ..+.++++|++|+++++.-. .. .......+++|++|++.+ +.++.
T Consensus 96 -----~~-------------------~~~~~l~~L~~L~Ls~n~i~-~~---~~~~~~~l~~L~~L~l~~-----n~l~~ 142 (477)
T 2id5_A 96 -----PL-------------------GVFTGLSNLTKLDISENKIV-IL---LDYMFQDLYNLKSLEVGD-----NDLVY 142 (477)
T ss_dssp -----CT-------------------TSSTTCTTCCEEECTTSCCC-EE---CTTTTTTCTTCCEEEECC-----TTCCE
T ss_pred -----Cc-------------------ccccCCCCCCEEECCCCccc-cC---ChhHccccccCCEEECCC-----Cccce
Confidence 10 11346789999999987522 21 112236789999999987 23333
Q ss_pred cchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCch
Q 044164 349 SMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTV 428 (714)
Q Consensus 349 ~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~ 428 (714)
.. ...+..+++|+.|++++|. ++.... .....+++|+.|++.+|. ++...... ...+ ++|++|++++|..+...
T Consensus 143 ~~-~~~~~~l~~L~~L~l~~n~-l~~~~~-~~l~~l~~L~~L~l~~n~-i~~~~~~~-~~~l-~~L~~L~l~~~~~~~~~ 216 (477)
T 2id5_A 143 IS-HRAFSGLNSLEQLTLEKCN-LTSIPT-EALSHLHGLIVLRLRHLN-INAIRDYS-FKRL-YRLKVLEISHWPYLDTM 216 (477)
T ss_dssp EC-TTSSTTCTTCCEEEEESCC-CSSCCH-HHHTTCTTCCEEEEESCC-CCEECTTC-SCSC-TTCCEEEEECCTTCCEE
T ss_pred eC-hhhccCCCCCCEEECCCCc-CcccCh-hHhcccCCCcEEeCCCCc-CcEeChhh-cccC-cccceeeCCCCcccccc
Confidence 21 2356788999999999885 443322 223458999999998887 44321111 1234 78999999988766221
Q ss_pred hHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCC
Q 044164 429 CSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGF 508 (714)
Q Consensus 429 ~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (714)
.... ....+|++|+++...++......+
T Consensus 217 --~~~~-~~~~~L~~L~l~~n~l~~~~~~~~------------------------------------------------- 244 (477)
T 2id5_A 217 --TPNC-LYGLNLTSLSITHCNLTAVPYLAV------------------------------------------------- 244 (477)
T ss_dssp --CTTT-TTTCCCSEEEEESSCCCSCCHHHH-------------------------------------------------
T ss_pred --Cccc-ccCccccEEECcCCcccccCHHHh-------------------------------------------------
Confidence 1111 123488999884334333222233
Q ss_pred CccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCc
Q 044164 509 SSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGD 588 (714)
Q Consensus 509 ~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~ 588 (714)
..+++|+.|.+ .+..++.++...+.++++|++|.+. ++......|. .+..+++|+.++|+.|.
T Consensus 245 ----~~l~~L~~L~L---s~n~l~~~~~~~~~~l~~L~~L~L~--~n~l~~~~~~--------~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 245 ----RHLVYLRFLNL---SYNPISTIEGSMLHELLRLQEIQLV--GGQLAVVEPY--------AFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp ----TTCTTCCEEEC---CSSCCCEECTTSCTTCTTCCEEECC--SSCCSEECTT--------TBTTCTTCCEEECCSSC
T ss_pred ----cCccccCeeEC---CCCcCCccChhhccccccCCEEECC--CCccceECHH--------HhcCcccCCEEECCCCc
Confidence 45678888887 4455667776668888999999885 3322222233 67788899999999998
Q ss_pred cccccccCCCCCccchhhHHhhhcc
Q 044164 589 AIGFALTAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 589 ~~~~~~~~p~~~~~l~~~~~~~l~~ 613 (714)
+++.. |..+..++.++.+++.+
T Consensus 308 l~~~~---~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 308 LTTLE---ESVFHSVGNLETLILDS 329 (477)
T ss_dssp CSCCC---GGGBSCGGGCCEEECCS
T ss_pred CceeC---HhHcCCCcccCEEEccC
Confidence 87744 44556677777777777
No 40
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.60 E-value=1.2e-15 Score=169.09 Aligned_cols=222 Identities=15% Similarity=0.103 Sum_probs=138.2
Q ss_pred cCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCC
Q 044164 129 EWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYK 208 (714)
Q Consensus 129 ~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~ 208 (714)
.+++|++|++.++... .+ +.+..+++|++|+++++....- + +.. +++|++|++++|.. .++.
T Consensus 40 ~l~~L~~L~Ls~n~l~-~~-------~~l~~l~~L~~L~Ls~n~l~~~--~--~~~----l~~L~~L~Ls~N~l--~~~~ 101 (457)
T 3bz5_A 40 QLATLTSLDCHNSSIT-DM-------TGIEKLTGLTKLICTSNNITTL--D--LSQ----NTNLTYLACDSNKL--TNLD 101 (457)
T ss_dssp HHTTCCEEECCSSCCC-CC-------TTGGGCTTCSEEECCSSCCSCC--C--CTT----CTTCSEEECCSSCC--SCCC
T ss_pred HcCCCCEEEccCCCcc-cC-------hhhcccCCCCEEEccCCcCCeE--c--ccc----CCCCCEEECcCCCC--ceee
Confidence 4678888888876322 11 1356788888888888864331 1 233 34888888887532 2221
Q ss_pred HHHHHHHHhhCCCCcEEEe-eeecccccccccCHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCC
Q 044164 209 SHELLSITSACPNLSQLLA-TCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDAR 287 (714)
Q Consensus 209 ~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~ 287 (714)
...+++|++|++ .+. ++.-. ...+++|++|+++++ .++++
T Consensus 102 -------~~~l~~L~~L~L~~N~--------l~~l~----~~~l~~L~~L~l~~N-~l~~l------------------- 142 (457)
T 3bz5_A 102 -------VTPLTKLTYLNCDTNK--------LTKLD----VSQNPLLTYLNCARN-TLTEI------------------- 142 (457)
T ss_dssp -------CTTCTTCCEEECCSSC--------CSCCC----CTTCTTCCEEECTTS-CCSCC-------------------
T ss_pred -------cCCCCcCCEEECCCCc--------CCeec----CCCCCcCCEEECCCC-cccee-------------------
Confidence 456788888888 443 22211 246788888888754 22221
Q ss_pred cCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeee
Q 044164 288 ISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIK 367 (714)
Q Consensus 288 it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~ 367 (714)
. +..+++|+.|++++|..++... ...+++|++|++++ +.++.. .++.+++|+.|+++
T Consensus 143 -~-------l~~l~~L~~L~l~~n~~~~~~~------~~~l~~L~~L~ls~-----n~l~~l----~l~~l~~L~~L~l~ 199 (457)
T 3bz5_A 143 -D-------VSHNTQLTELDCHLNKKITKLD------VTPQTQLTTLDCSF-----NKITEL----DVSQNKLLNRLNCD 199 (457)
T ss_dssp -C-------CTTCTTCCEEECTTCSCCCCCC------CTTCTTCCEEECCS-----SCCCCC----CCTTCTTCCEEECC
T ss_pred -c-------cccCCcCCEEECCCCCcccccc------cccCCcCCEEECCC-----Ccccee----ccccCCCCCEEECc
Confidence 0 2356788888888876554321 35678888888887 334432 15677888888888
Q ss_pred cCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEe
Q 044164 368 NSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVD 447 (714)
Q Consensus 368 ~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~ 447 (714)
+|. +++.. ...+++|+.|++++|. +++ ++ ...+ ++|++|++++|.... . . ...+++|+.|+++
T Consensus 200 ~N~-l~~~~----l~~l~~L~~L~Ls~N~-l~~--ip--~~~l-~~L~~L~l~~N~l~~-~-~----~~~l~~L~~L~l~ 262 (457)
T 3bz5_A 200 TNN-ITKLD----LNQNIQLTFLDCSSNK-LTE--ID--VTPL-TQLTYFDCSVNPLTE-L-D----VSTLSKLTTLHCI 262 (457)
T ss_dssp SSC-CSCCC----CTTCTTCSEEECCSSC-CSC--CC--CTTC-TTCSEEECCSSCCSC-C-C----CTTCTTCCEEECT
T ss_pred CCc-CCeec----cccCCCCCEEECcCCc-ccc--cC--cccc-CCCCEEEeeCCcCCC-c-C----HHHCCCCCEEecc
Confidence 875 44321 2347888888888887 554 22 2344 788888888876441 1 1 2345677777663
No 41
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=7.2e-14 Score=151.43 Aligned_cols=256 Identities=16% Similarity=0.144 Sum_probs=172.6
Q ss_pred HHHhcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCC---HHHHH---HHHhhCCCCcEEEee
Q 044164 155 ALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYK---SHELL---SITSACPNLSQLLAT 228 (714)
Q Consensus 155 ~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~---~~~l~---~l~~~~~~L~~L~L~ 228 (714)
..+..+++|++|+|+++.. ....+..+...-..+++|++|++++|. ...++ ..++. ..+..+++|++|++.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i-~~~~~~~l~~~l~~~~~L~~L~Ls~~~--~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTI-GTEAARWLSENIASKKDLEIAEFSDIF--TGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp HHHHHCSCCCEEECTTSEE-CHHHHHHHHHTTTTCTTCCEEECCSCC--TTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHhcCCCccEEECCCCCC-CHHHHHHHHHHHHhCCCccEEeCcccc--cCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4567789999999999974 333333333222246699999999742 12222 22333 334678999999994
Q ss_pred eecccccccccCHHH---HHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHH---HHHhcC--
Q 044164 229 CVFDHRFLGFVGDET---LLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALG---DFFESL-- 300 (714)
Q Consensus 229 c~~~~~~~~~i~~~~---l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~---~l~~~~-- 300 (714)
.+ .+++.+ +......+++|++|++++|. +++.+.. ..+..+
T Consensus 103 ~n-------~l~~~~~~~l~~~l~~~~~L~~L~L~~n~------------------------l~~~~~~~l~~~l~~l~~ 151 (386)
T 2ca6_A 103 DN-------AFGPTAQEPLIDFLSKHTPLEHLYLHNNG------------------------LGPQAGAKIARALQELAV 151 (386)
T ss_dssp SC-------CCCTTTHHHHHHHHHHCTTCCEEECCSSC------------------------CHHHHHHHHHHHHHHHHH
T ss_pred CC-------cCCHHHHHHHHHHHHhCCCCCEEECcCCC------------------------CCHHHHHHHHHHHHHHhh
Confidence 33 355533 33334688999999998762 3333333 323334
Q ss_pred -------CcccceecccccCcCCC-hHHHHHHhccCCCccEEEeccccCccccCCCcc---hHH-HhcCCcCcceeeeec
Q 044164 301 -------PLLEELVLDVGNNVRDT-WPALELLNSKCPRLKSLKLGQVHGICREIDSSM---PAA-GVALWKGLESLSIKN 368 (714)
Q Consensus 301 -------p~L~~L~L~~c~~l~~~-~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~---~l~-~l~~~~~L~~L~L~~ 368 (714)
++|++|++++|. +++. .+.+......+++|++|+++++ .+++.+ ... .+..+++|+.|+|++
T Consensus 152 ~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n-----~l~~~g~~~l~~~~l~~~~~L~~L~Ls~ 225 (386)
T 2ca6_A 152 NKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQN-----GIRPEGIEHLLLEGLAYCQELKVLDLQD 225 (386)
T ss_dssp HHHHHTCCCCCEEECCSSC-CTGGGHHHHHHHHHHCTTCCEEECCSS-----CCCHHHHHHHHHTTGGGCTTCCEEECCS
T ss_pred hhhcccCCCCcEEECCCCC-CCcHHHHHHHHHHHhCCCcCEEECcCC-----CCCHhHHHHHHHHHhhcCCCccEEECcC
Confidence 899999999984 4422 2223345578999999999983 444332 122 567899999999999
Q ss_pred CCCCCHHHHHHHH---hcCCCccEEEEeCCCCCCHHHHHHHHHH-----cCCCeeEEEeeCCCCCCchh----HHHHHHh
Q 044164 369 SADLTDSALIAIS---LGCSNLTKFEVQGCNKITKMGMQIFARV-----LEKTLVDVRISSCKYLNTVC----SLQALEP 436 (714)
Q Consensus 369 c~~ltd~~l~~l~---~~~~~L~~L~L~~c~~lt~~~l~~l~~~-----~~~~L~~L~L~~C~~l~~~~----~l~~l~~ 436 (714)
|. +++.+...++ ..+++|+.|+|++|. +++.+...++.. + ++|++|++++|... +. ....+..
T Consensus 226 n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~-~~L~~L~L~~n~i~--~~g~~~l~~~l~~ 300 (386)
T 2ca6_A 226 NT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLEN-IGLQTLRLQYNEIE--LDAVRTLKTVIDE 300 (386)
T ss_dssp SC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSS-CCCCEEECCSSCCB--HHHHHHHHHHHHH
T ss_pred CC-CCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccC-CCeEEEECcCCcCC--HHHHHHHHHHHHh
Confidence 87 8876655544 558999999999998 999988877764 4 89999999999754 32 2233435
Q ss_pred cCCCCCEEEEecccccccc
Q 044164 437 IRDRIQRLHVDCVWESVEQ 455 (714)
Q Consensus 437 ~~~~L~~L~l~C~~~~~~~ 455 (714)
.+++|++|+++.+.++...
T Consensus 301 ~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 301 KMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HCTTCCEEECTTSBSCTTS
T ss_pred cCCCceEEEccCCcCCcch
Confidence 5799999999544444444
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.58 E-value=1.2e-16 Score=178.39 Aligned_cols=303 Identities=14% Similarity=0.076 Sum_probs=197.0
Q ss_pred CCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccccccc
Q 044164 160 CPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLGF 238 (714)
Q Consensus 160 ~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~ 238 (714)
.++++.|+|+++.. ++..+..+..+ ++|++|+|++|.. .++.. ....++++|++|++ ++.+. .
T Consensus 31 ~~~l~~L~L~~n~l-~~~~~~~~~~l----~~L~~L~L~~n~i--~~~~~----~~~~~l~~L~~L~L~~n~l~-----~ 94 (477)
T 2id5_A 31 PTETRLLDLGKNRI-KTLNQDEFASF----PHLEELELNENIV--SAVEP----GAFNNLFNLRTLGLRSNRLK-----L 94 (477)
T ss_dssp CTTCSEEECCSSCC-CEECTTTTTTC----TTCCEEECTTSCC--CEECT----TTTTTCTTCCEEECCSSCCC-----S
T ss_pred CCCCcEEECCCCcc-ceECHhHccCC----CCCCEEECCCCcc--CEeCh----hhhhCCccCCEEECCCCcCC-----c
Confidence 36899999999873 22223333444 4999999998532 22211 23457899999999 55421 1
Q ss_pred cCHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCCh
Q 044164 239 VGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTW 318 (714)
Q Consensus 239 i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~ 318 (714)
+... ...++++|++|+++++. ++.. . ...+..+++|++|+++++. ++...
T Consensus 95 ~~~~----~~~~l~~L~~L~Ls~n~-i~~~--------------------~----~~~~~~l~~L~~L~l~~n~-l~~~~ 144 (477)
T 2id5_A 95 IPLG----VFTGLSNLTKLDISENK-IVIL--------------------L----DYMFQDLYNLKSLEVGDND-LVYIS 144 (477)
T ss_dssp CCTT----SSTTCTTCCEEECTTSC-CCEE--------------------C----TTTTTTCTTCCEEEECCTT-CCEEC
T ss_pred cCcc----cccCCCCCCEEECCCCc-cccC--------------------C----hhHccccccCCEEECCCCc-cceeC
Confidence 1111 12467999999998652 2211 0 0123467999999999874 22211
Q ss_pred HHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCC
Q 044164 319 PALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKI 398 (714)
Q Consensus 319 ~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~l 398 (714)
......+++|++|++.++ .++... ...+..+++|+.|+++++. ++.... .....+++|+.|++++|..+
T Consensus 145 ---~~~~~~l~~L~~L~l~~n-----~l~~~~-~~~l~~l~~L~~L~l~~n~-i~~~~~-~~~~~l~~L~~L~l~~~~~~ 213 (477)
T 2id5_A 145 ---HRAFSGLNSLEQLTLEKC-----NLTSIP-TEALSHLHGLIVLRLRHLN-INAIRD-YSFKRLYRLKVLEISHWPYL 213 (477)
T ss_dssp ---TTSSTTCTTCCEEEEESC-----CCSSCC-HHHHTTCTTCCEEEEESCC-CCEECT-TCSCSCTTCCEEEEECCTTC
T ss_pred ---hhhccCCCCCCEEECCCC-----cCcccC-hhHhcccCCCcEEeCCCCc-CcEeCh-hhcccCcccceeeCCCCccc
Confidence 112367899999999983 344432 4568899999999999975 332211 12245899999999999864
Q ss_pred CHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccccCCccc
Q 044164 399 TKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKD 478 (714)
Q Consensus 399 t~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 478 (714)
+... .... .. .+|++|++++|... . ........+++|+.|+++.+.++...+..+
T Consensus 214 ~~~~-~~~~-~~-~~L~~L~l~~n~l~--~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~------------------- 268 (477)
T 2id5_A 214 DTMT-PNCL-YG-LNLTSLSITHCNLT--A-VPYLAVRHLVYLRFLNLSYNPISTIEGSML------------------- 268 (477)
T ss_dssp CEEC-TTTT-TT-CCCSEEEEESSCCC--S-CCHHHHTTCTTCCEEECCSSCCCEECTTSC-------------------
T ss_pred cccC-cccc-cC-ccccEEECcCCccc--c-cCHHHhcCccccCeeECCCCcCCccChhhc-------------------
Confidence 4321 1111 12 58999999998743 2 222334567999999995444444333333
Q ss_pred cchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccC
Q 044164 479 FQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRN 558 (714)
Q Consensus 479 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~ 558 (714)
..+++|+.|.+ .+..++.+....+.++++|+.|+++ ++...
T Consensus 269 ----------------------------------~~l~~L~~L~L---~~n~l~~~~~~~~~~l~~L~~L~L~--~N~l~ 309 (477)
T 2id5_A 269 ----------------------------------HELLRLQEIQL---VGGQLAVVEPYAFRGLNYLRVLNVS--GNQLT 309 (477)
T ss_dssp ----------------------------------TTCTTCCEEEC---CSSCCSEECTTTBTTCTTCCEEECC--SSCCS
T ss_pred ----------------------------------cccccCCEEEC---CCCccceECHHHhcCcccCCEEECC--CCcCc
Confidence 45678999888 5556677766778999999999996 33333
Q ss_pred CCCcccccccccccccCCccccccccccCcccc
Q 044164 559 QQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 559 ~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~ 591 (714)
. .|. ..+..+++|+.++|+.|.+.+
T Consensus 310 ~-~~~-------~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 310 T-LEE-------SVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp C-CCG-------GGBSCGGGCCEEECCSSCEEC
T ss_pred e-eCH-------hHcCCCcccCEEEccCCCccC
Confidence 2 222 256889999999999998765
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.54 E-value=5.2e-15 Score=164.07 Aligned_cols=75 Identities=12% Similarity=0.074 Sum_probs=45.4
Q ss_pred cccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCccccccccc--ccc---cCCccccccccccCcc
Q 044164 515 WTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGL--NSL---VNYPQLSRMHFDCGDA 589 (714)
Q Consensus 515 ~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l--~~l---~~~~~L~~~~l~~~~~ 589 (714)
.++|++|.+ .+..++.+ .+.+|++|+.|.++ +|.... .|.+ ...-+ ..+ ..+..|..++|+.|.+
T Consensus 317 ~~~L~~L~L---~~N~l~~l---~l~~l~~L~~L~l~--~N~l~~-l~~L-~~L~l~~n~l~g~~~~~~l~~l~l~~N~l 386 (457)
T 3bz5_A 317 NPKLVYLYL---NNTELTEL---DVSHNTKLKSLSCV--NAHIQD-FSSV-GKIPALNNNFEAEGQTITMPKETLTNNSL 386 (457)
T ss_dssp CTTCCEEEC---TTCCCSCC---CCTTCTTCSEEECC--SSCCCB-CTTG-GGSSGGGTSEEEEEEEEECCCBCCBTTBE
T ss_pred cccCCEEEC---CCCccccc---ccccCCcCcEEECC--CCCCCC-cccc-ccccccCCcEEecceeeecCccccccCcE
Confidence 467888887 45555665 38889999999986 444332 2221 11100 011 2345677788888888
Q ss_pred ccccccCCCCCcc
Q 044164 590 IGFALTAPRGYAD 602 (714)
Q Consensus 590 ~~~~~~~p~~~~~ 602 (714)
+|.+ |....+
T Consensus 387 ~g~i---p~~~~~ 396 (457)
T 3bz5_A 387 TIAV---SPDLLD 396 (457)
T ss_dssp EEEC---CTTCBC
T ss_pred EEEc---ChhHhc
Confidence 8877 765444
No 44
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.52 E-value=2.1e-15 Score=163.74 Aligned_cols=35 Identities=14% Similarity=0.140 Sum_probs=19.8
Q ss_pred CCCCceEEecCccccCCChHH-HHHhchhccCCCcEEEeccC
Q 044164 160 CPSLSSIDLSHFYCWTEDLPT-AFELYPSIAASLSHLNLLVG 200 (714)
Q Consensus 160 ~~~L~~L~Ls~~~~~~~~~~~-~l~~l~~~~~~L~~L~L~~n 200 (714)
+++++.|+++++... .++. .+..++ +|++|++++|
T Consensus 44 l~~l~~l~l~~~~l~--~l~~~~~~~l~----~L~~L~L~~n 79 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR--KLPAALLDSFR----QVELLNLNDL 79 (390)
T ss_dssp GCCCSEEEEESCEES--EECTHHHHHCC----CCSEEECTTS
T ss_pred cCCceEEEecCCchh--hCChhHhcccc----cCcEEECCCC
Confidence 567777777776521 2222 233344 7777777764
No 45
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.51 E-value=4.6e-15 Score=161.05 Aligned_cols=82 Identities=15% Similarity=0.106 Sum_probs=49.9
Q ss_pred cCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCC
Q 044164 129 EWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYK 208 (714)
Q Consensus 129 ~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~ 208 (714)
.+++++.|.+.+... ..++ ..++..+++|++|+++++... +..+..+..+ ++|++|++++|.. .++.
T Consensus 43 ~l~~l~~l~l~~~~l-~~l~-----~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l----~~L~~L~L~~n~l--~~~~ 109 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTM-RKLP-----AALLDSFRQVELLNLNDLQIE-EIDTYAFAYA----HTIQKLYMGFNAI--RYLP 109 (390)
T ss_dssp GGCCCSEEEEESCEE-SEEC-----THHHHHCCCCSEEECTTSCCC-EECTTTTTTC----TTCCEEECCSSCC--CCCC
T ss_pred ccCCceEEEecCCch-hhCC-----hhHhcccccCcEEECCCCccc-ccChhhccCC----CCcCEEECCCCCC--CcCC
Confidence 468899999987742 1111 134678999999999998632 2212223333 4899999987532 2221
Q ss_pred HHHHHHHHhhCCCCcEEEe
Q 044164 209 SHELLSITSACPNLSQLLA 227 (714)
Q Consensus 209 ~~~l~~l~~~~~~L~~L~L 227 (714)
. .....+++|++|++
T Consensus 110 ~----~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 110 P----HVFQNVPLLTVLVL 124 (390)
T ss_dssp T----TTTTTCTTCCEEEC
T ss_pred H----HHhcCCCCCCEEEC
Confidence 1 12245667777777
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.50 E-value=5.5e-15 Score=156.62 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=54.3
Q ss_pred ccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccccc
Q 044164 514 TWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFA 593 (714)
Q Consensus 514 ~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~ 593 (714)
.+++|++|.+ .+..++.++.. ++++++|++|.++ ++......|. .+..+++|+.++|+.|...|.+
T Consensus 204 ~l~~L~~L~L---~~N~l~~l~~~-l~~l~~L~~L~Ls--~n~~~~~~p~--------~~~~l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 204 NLQNLKSLKI---RNSPLSALGPA-IHHLPKLEELDLR--GCTALRNYPP--------IFGGRAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp GCTTCCEEEE---ESSCCCCCCGG-GGGCTTCCEEECT--TCTTCCBCCC--------CTTCCCCCCEEECTTCTTCCBC
T ss_pred CCCCCCEEEc---cCCCCCcCchh-hccCCCCCEEECc--CCcchhhhHH--------HhcCCCCCCEEECCCCCchhhc
Confidence 3445555555 22333344332 5555566666553 2222233333 4455556666666665555544
Q ss_pred ccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeec
Q 044164 594 LTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIH 657 (714)
Q Consensus 594 ~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 657 (714)
|..+.+++.++.+++.+ |.+.+++|+. ++++++|+.+.+.
T Consensus 270 ---p~~~~~l~~L~~L~L~~-------------------n~~~~~iP~~--l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 270 ---PLDIHRLTQLEKLDLRG-------------------CVNLSRLPSL--IAQLPANCIILVP 309 (328)
T ss_dssp ---CTTGGGCTTCCEEECTT-------------------CTTCCCCCGG--GGGSCTTCEEECC
T ss_pred ---chhhhcCCCCCEEeCCC-------------------CCchhhccHH--HhhccCceEEeCC
Confidence 55555555555555555 5555666655 5555555555555
No 47
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.50 E-value=1.1e-12 Score=140.91 Aligned_cols=70 Identities=23% Similarity=0.202 Sum_probs=29.5
Q ss_pred HHHhcCC-CCceEEecCccccCCChHHHHHhc-hhccCCCcEEEeccCccccCCCCHHHHHHHHhhC-CCCcEEEe
Q 044164 155 ALFEHCP-SLSSIDLSHFYCWTEDLPTAFELY-PSIAASLSHLNLLVGHSFTEGYKSHELLSITSAC-PNLSQLLA 227 (714)
Q Consensus 155 ~~~~~~~-~L~~L~Ls~~~~~~~~~~~~l~~l-~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~-~~L~~L~L 227 (714)
..+..++ +|++|+|+++...... +..+... ...+++|++|++++|.. .+.....+......+ ++|++|++
T Consensus 44 ~~l~~~~~~L~~L~Ls~N~l~~~~-~~~l~~~l~~~~~~L~~L~Ls~n~l--~~~~~~~l~~~l~~~~~~L~~L~L 116 (362)
T 3goz_A 44 QAFANTPASVTSLNLSGNSLGFKN-SDELVQILAAIPANVTSLNLSGNFL--SYKSSDELVKTLAAIPFTITVLDL 116 (362)
T ss_dssp HHHHTCCTTCCEEECCSSCGGGSC-HHHHHHHHHTSCTTCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred HHHHhCCCceeEEECcCCCCCHHH-HHHHHHHHhccCCCccEEECcCCcC--ChHHHHHHHHHHHhCCCCccEEEC
Confidence 3444555 5666666655432222 2222221 10113566666655321 122233333333344 55555555
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.49 E-value=9.6e-16 Score=176.75 Aligned_cols=129 Identities=13% Similarity=0.125 Sum_probs=95.1
Q ss_pred ccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccC-CCCcccccccccccccCCccccccccccCccccc
Q 044164 514 TWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRN-QQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGF 592 (714)
Q Consensus 514 ~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~-~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~ 592 (714)
.+.+++.+.+ ....++......+..+++|+.|.+. ++... ...|. .+..+++|+.++|+.|.+++.
T Consensus 443 ~l~~l~~l~l---s~n~l~~~~~~~~~~~~~L~~L~Ls--~N~~~~~~~~~--------~~~~l~~L~~L~Ls~N~L~~l 509 (635)
T 4g8a_A 443 SLRNLIYLDI---SHTHTRVAFNGIFNGLSSLEVLKMA--GNSFQENFLPD--------IFTELRNLTFLDLSQCQLEQL 509 (635)
T ss_dssp TCTTCCEEEC---TTSCCEECCTTTTTTCTTCCEEECT--TCEEGGGEECS--------CCTTCTTCCEEECTTSCCCEE
T ss_pred cccccccccc---cccccccccccccccchhhhhhhhh--hcccccccCch--------hhhhccccCEEECCCCccCCc
Confidence 3556666665 3344455555557789999999995 33212 22233 678899999999999999987
Q ss_pred cccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeec-----cchhHHHHHH
Q 044164 593 ALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIH-----GTANEHFMSF 667 (714)
Q Consensus 593 ~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~~~ 667 (714)
. |..+..|+.++.++|.+ |++++-.|.+ ++++++|+.|+++ |..|+.|..+
T Consensus 510 ~---~~~f~~l~~L~~L~Ls~-------------------N~l~~l~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 510 S---PTAFNSLSSLQVLNMSH-------------------NNFFSLDTFP--YKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp C---TTTTTTCTTCCEEECTT-------------------SCCCBCCCGG--GTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred C---hHHHcCCCCCCEEECCC-------------------CcCCCCChhH--HhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 6 88888899899999988 9998877777 8899999999998 4556666555
Q ss_pred HhcCCCccccccccc
Q 044164 668 FLKIPTLRDVQLRED 682 (714)
Q Consensus 668 ~~~~~~l~~~~~~~~ 682 (714)
. ++|+.+.|+..
T Consensus 566 ~---~~L~~L~L~~N 577 (635)
T 4g8a_A 566 P---SSLAFLNLTQN 577 (635)
T ss_dssp C---TTCCEEECTTC
T ss_pred h---CcCCEEEeeCC
Confidence 2 46888877653
No 49
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.49 E-value=1.1e-14 Score=161.14 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=40.6
Q ss_pred ccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccccccc
Q 044164 516 TKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALT 595 (714)
Q Consensus 516 ~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~ 595 (714)
++|++|++ .+..++.++.. +++|+.|+++ ++.-...|. .+++|+.++|+.|.++|.- .
T Consensus 317 ~~L~~L~L---s~N~l~~lp~~----~~~L~~L~L~---~N~l~~lp~-----------~l~~L~~L~L~~N~l~~l~-~ 374 (454)
T 1jl5_A 317 PSLEELNV---SNNKLIELPAL----PPRLERLIAS---FNHLAEVPE-----------LPQNLKQLHVEYNPLREFP-D 374 (454)
T ss_dssp TTCCEEEC---CSSCCSCCCCC----CTTCCEEECC---SSCCSCCCC-----------CCTTCCEEECCSSCCSSCC-C
T ss_pred CcCCEEEC---CCCcccccccc----CCcCCEEECC---CCccccccc-----------hhhhccEEECCCCCCCcCC-C
Confidence 46777777 33445555432 5888999885 232222221 3678889999999888831 1
Q ss_pred CCCCCccc
Q 044164 596 APRGYADL 603 (714)
Q Consensus 596 ~p~~~~~l 603 (714)
.|..+++|
T Consensus 375 ip~~l~~L 382 (454)
T 1jl5_A 375 IPESVEDL 382 (454)
T ss_dssp CCTTCCEE
T ss_pred ChHHHHhh
Confidence 26666665
No 50
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=4.2e-15 Score=170.73 Aligned_cols=223 Identities=13% Similarity=0.130 Sum_probs=107.1
Q ss_pred CCCCceEEecCccccCCChHH-HHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeeccccccc
Q 044164 160 CPSLSSIDLSHFYCWTEDLPT-AFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHRFLG 237 (714)
Q Consensus 160 ~~~L~~L~Ls~~~~~~~~~~~-~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~ 237 (714)
+++++.|+++++.. . .++. .+..++ +|++|++++|.. .++... .+..+++|+.|++ .|.+.
T Consensus 50 l~~l~~l~l~~~~l-~-~lp~~~~~~l~----~L~~L~L~~n~l--~~~~~~----~~~~l~~L~~L~L~~n~l~----- 112 (597)
T 3oja_B 50 LNNQKIVTFKNSTM-R-KLPAALLDSFR----QVELLNLNDLQI--EEIDTY----AFAYAHTIQKLYMGFNAIR----- 112 (597)
T ss_dssp GCCCSEEEESSCEE-S-EECTHHHHHCC----CCSEEECTTSCC--CEECTT----TTTTCTTCCEEECCSSCCC-----
T ss_pred CCCceEEEeeCCCC-C-CcCHHHHccCC----CCcEEECCCCCC--CCCChH----HhcCCCCCCEEECCCCcCC-----
Confidence 56788888887753 2 2222 234444 888888887432 112111 2235677777777 43311
Q ss_pred ccCHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCC
Q 044164 238 FVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDT 317 (714)
Q Consensus 238 ~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~ 317 (714)
.+... ...++++|++|+++++ .++.+ | ..++..+++|+.|++++|. ++..
T Consensus 113 ~~~~~----~~~~l~~L~~L~L~~n-~l~~l-----~-------------------~~~~~~l~~L~~L~Ls~N~-l~~~ 162 (597)
T 3oja_B 113 YLPPH----VFQNVPLLTVLVLERN-DLSSL-----P-------------------RGIFHNTPKLTTLSMSNNN-LERI 162 (597)
T ss_dssp CCCTT----TTTTCTTCCEEECCSS-CCCCC-----C-------------------TTTTTTCTTCCEEECCSSC-CCBC
T ss_pred CCCHH----HHcCCCCCCEEEeeCC-CCCCC-----C-------------------HHHhccCCCCCEEEeeCCc-CCCC
Confidence 11111 1135567777777654 22221 1 0112345667777776653 2221
Q ss_pred hHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCC
Q 044164 318 WPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNK 397 (714)
Q Consensus 318 ~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~ 397 (714)
. ......+++|++|++++ +.++.. .+..+++|+.|+++++. ++.. ...++|+.|++++|.
T Consensus 163 ~---~~~~~~l~~L~~L~L~~-----N~l~~~----~~~~l~~L~~L~l~~n~-l~~l------~~~~~L~~L~ls~n~- 222 (597)
T 3oja_B 163 E---DDTFQATTSLQNLQLSS-----NRLTHV----DLSLIPSLFHANVSYNL-LSTL------AIPIAVEELDASHNS- 222 (597)
T ss_dssp C---TTTTTTCTTCCEEECTT-----SCCSBC----CGGGCTTCSEEECCSSC-CSEE------ECCTTCSEEECCSSC-
T ss_pred C---hhhhhcCCcCcEEECcC-----CCCCCc----ChhhhhhhhhhhcccCc-cccc------cCCchhheeeccCCc-
Confidence 1 11225566677777765 222222 23445666666666654 3211 124556666666665
Q ss_pred CCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchh
Q 044164 398 ITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQD 459 (714)
Q Consensus 398 lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l 459 (714)
++... ...+++|+.|++++|.... . .. ...+++|+.|+++.+.+++..+..+
T Consensus 223 l~~~~-----~~~~~~L~~L~L~~n~l~~-~---~~-l~~l~~L~~L~Ls~N~l~~~~~~~~ 274 (597)
T 3oja_B 223 INVVR-----GPVNVELTILKLQHNNLTD-T---AW-LLNYPGLVEVDLSYNELEKIMYHPF 274 (597)
T ss_dssp CCEEE-----CSCCSCCCEEECCSSCCCC-C---GG-GGGCTTCSEEECCSSCCCEEESGGG
T ss_pred ccccc-----cccCCCCCEEECCCCCCCC-C---hh-hccCCCCCEEECCCCccCCCCHHHh
Confidence 32211 0111456666666665431 1 11 2234666666664333333333333
No 51
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.48 E-value=8.2e-15 Score=168.30 Aligned_cols=312 Identities=16% Similarity=0.116 Sum_probs=203.5
Q ss_pred cCCCCCEEEEecccccCCCCChHHHHHHHhcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccCccccCCCC
Q 044164 129 EWPKLSHVKLVRWHQRFNAPIGYDFFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVGHSFTEGYK 208 (714)
Q Consensus 129 ~~p~L~~L~L~~~~~~~~~~~~~~l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~ 208 (714)
.+++++.|.+.++... .+ -..++..+++|++|+|+++.. .+..+..+..+ ++|++|+|++|.. .++.
T Consensus 49 ~l~~l~~l~l~~~~l~-~l-----p~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l----~~L~~L~L~~n~l--~~~~ 115 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KL-----PAALLDSFRQVELLNLNDLQI-EEIDTYAFAYA----HTIQKLYMGFNAI--RYLP 115 (597)
T ss_dssp GGCCCSEEEESSCEES-EE-----CTHHHHHCCCCSEEECTTSCC-CEECTTTTTTC----TTCCEEECCSSCC--CCCC
T ss_pred cCCCceEEEeeCCCCC-Cc-----CHHHHccCCCCcEEECCCCCC-CCCChHHhcCC----CCCCEEECCCCcC--CCCC
Confidence 3678999999876421 11 123567899999999999873 22222233444 4999999998632 2222
Q ss_pred HHHHHHHHhhCCCCcEEEe-eeecccccccccCHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCC
Q 044164 209 SHELLSITSACPNLSQLLA-TCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDAR 287 (714)
Q Consensus 209 ~~~l~~l~~~~~~L~~L~L-~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~ 287 (714)
. ..+.++++|+.|++ +|.+. .+.. .+..++++|++|+++++ .+++. +
T Consensus 116 ~----~~~~~l~~L~~L~L~~n~l~-----~l~~----~~~~~l~~L~~L~Ls~N-~l~~~-----~------------- 163 (597)
T 3oja_B 116 P----HVFQNVPLLTVLVLERNDLS-----SLPR----GIFHNTPKLTTLSMSNN-NLERI-----E------------- 163 (597)
T ss_dssp T----TTTTTCTTCCEEECCSSCCC-----CCCT----TTTTTCTTCCEEECCSS-CCCBC-----C-------------
T ss_pred H----HHHcCCCCCCEEEeeCCCCC-----CCCH----HHhccCCCCCEEEeeCC-cCCCC-----C-------------
Confidence 2 23457899999999 55421 1111 12246799999999876 33322 0
Q ss_pred cCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeee
Q 044164 288 ISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIK 367 (714)
Q Consensus 288 it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~ 367 (714)
...+..+++|+.|+++++. ++... ...+++|+.|++.+ +.++ .+...++|+.|+++
T Consensus 164 ------~~~~~~l~~L~~L~L~~N~-l~~~~------~~~l~~L~~L~l~~-----n~l~------~l~~~~~L~~L~ls 219 (597)
T 3oja_B 164 ------DDTFQATTSLQNLQLSSNR-LTHVD------LSLIPSLFHANVSY-----NLLS------TLAIPIAVEELDAS 219 (597)
T ss_dssp ------TTTTTTCTTCCEEECTTSC-CSBCC------GGGCTTCSEEECCS-----SCCS------EEECCTTCSEEECC
T ss_pred ------hhhhhcCCcCcEEECcCCC-CCCcC------hhhhhhhhhhhccc-----Cccc------cccCCchhheeecc
Confidence 0113467999999999874 33321 36789999999987 2322 34566789999999
Q ss_pred cCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEe
Q 044164 368 NSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVD 447 (714)
Q Consensus 368 ~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~ 447 (714)
++. ++... ....++|+.|++++|. +++. . ....+ ++|+.|++++|... +. .+.....+++|+.|+++
T Consensus 220 ~n~-l~~~~----~~~~~~L~~L~L~~n~-l~~~--~-~l~~l-~~L~~L~Ls~N~l~--~~-~~~~~~~l~~L~~L~Ls 286 (597)
T 3oja_B 220 HNS-INVVR----GPVNVELTILKLQHNN-LTDT--A-WLLNY-PGLVEVDLSYNELE--KI-MYHPFVKMQRLERLYIS 286 (597)
T ss_dssp SSC-CCEEE----CSCCSCCCEEECCSSC-CCCC--G-GGGGC-TTCSEEECCSSCCC--EE-ESGGGTTCSSCCEEECT
T ss_pred CCc-ccccc----cccCCCCCEEECCCCC-CCCC--h-hhccC-CCCCEEECCCCccC--CC-CHHHhcCccCCCEEECC
Confidence 886 43211 1124789999999998 6652 2 23345 99999999998754 21 12222456899999995
Q ss_pred cccccccccchhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhc
Q 044164 448 CVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAV 527 (714)
Q Consensus 448 C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 527 (714)
.+.++.. +... ..+++|+.|++ .
T Consensus 287 ~N~l~~l-~~~~-----------------------------------------------------~~l~~L~~L~L---s 309 (597)
T 3oja_B 287 NNRLVAL-NLYG-----------------------------------------------------QPIPTLKVLDL---S 309 (597)
T ss_dssp TSCCCEE-ECSS-----------------------------------------------------SCCTTCCEEEC---C
T ss_pred CCCCCCC-Cccc-----------------------------------------------------ccCCCCcEEEC---C
Confidence 4443332 1111 34678999888 4
Q ss_pred ccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccccc
Q 044164 528 GELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFA 593 (714)
Q Consensus 528 ~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~ 593 (714)
+..++.++.. +..+++|+.|+++ + +.-... .+..+++|+.++|+.|.+.|..
T Consensus 310 ~N~l~~i~~~-~~~l~~L~~L~L~--~-N~l~~~----------~~~~~~~L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 310 HNHLLHVERN-QPQFDRLENLYLD--H-NSIVTL----------KLSTHHTLKNLTLSHNDWDCNS 361 (597)
T ss_dssp SSCCCCCGGG-HHHHTTCSEEECC--S-SCCCCC----------CCCTTCCCSEEECCSSCEEHHH
T ss_pred CCCCCccCcc-cccCCCCCEEECC--C-CCCCCc----------ChhhcCCCCEEEeeCCCCCChh
Confidence 5556666654 6789999999995 3 332222 3577899999999999877643
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.46 E-value=2e-14 Score=152.26 Aligned_cols=130 Identities=15% Similarity=0.186 Sum_probs=106.8
Q ss_pred ccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccccc
Q 044164 514 TWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFA 593 (714)
Q Consensus 514 ~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~ 593 (714)
.+++|++|.+ .+..++.++.. ++++++|++|.++ + +.-...|. .+..+++|+.++|+.|.+.|..
T Consensus 181 ~l~~L~~L~L---~~n~l~~lp~~-l~~l~~L~~L~L~--~-N~l~~l~~--------~l~~l~~L~~L~Ls~n~~~~~~ 245 (328)
T 4fcg_A 181 GLVNLQSLRL---EWTGIRSLPAS-IANLQNLKSLKIR--N-SPLSALGP--------AIHHLPKLEELDLRGCTALRNY 245 (328)
T ss_dssp ESTTCCEEEE---EEECCCCCCGG-GGGCTTCCEEEEE--S-SCCCCCCG--------GGGGCTTCCEEECTTCTTCCBC
T ss_pred cCCCCCEEEC---cCCCcCcchHh-hcCCCCCCEEEcc--C-CCCCcCch--------hhccCCCCCEEECcCCcchhhh
Confidence 4678888888 44556677654 8899999999996 3 33323444 5788999999999999999977
Q ss_pred ccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeec-----cchhHHHHHHH
Q 044164 594 LTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIH-----GTANEHFMSFF 668 (714)
Q Consensus 594 ~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~~~~ 668 (714)
|..+..++.++.+++.+ |.+.+.+|.+ ++++++|++|+|+ |.+|+.|+.+
T Consensus 246 ---p~~~~~l~~L~~L~L~~-------------------n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~iP~~l~~L- 300 (328)
T 4fcg_A 246 ---PPIFGGRAPLKRLILKD-------------------CSNLLTLPLD--IHRLTQLEKLDLRGCVNLSRLPSLIAQL- 300 (328)
T ss_dssp ---CCCTTCCCCCCEEECTT-------------------CTTCCBCCTT--GGGCTTCCEEECTTCTTCCCCCGGGGGS-
T ss_pred ---HHHhcCCCCCCEEECCC-------------------CCchhhcchh--hhcCCCCCEEeCCCCCchhhccHHHhhc-
Confidence 88888888888888888 8999999998 8999999999999 7899999988
Q ss_pred hcCCCccccccccccCCC
Q 044164 669 LKIPTLRDVQLREDYYPA 686 (714)
Q Consensus 669 ~~~~~l~~~~~~~~~~~~ 686 (714)
++|+.+.+.......
T Consensus 301 ---~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 301 ---PANCIILVPPHLQAQ 315 (328)
T ss_dssp ---CTTCEEECCGGGSCC
T ss_pred ---cCceEEeCCHHHHHH
Confidence 999999887766543
No 53
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.46 E-value=2.7e-15 Score=157.91 Aligned_cols=251 Identities=10% Similarity=0.103 Sum_probs=158.0
Q ss_pred CcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHH
Q 044164 301 PLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAI 380 (714)
Q Consensus 301 p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l 380 (714)
.++++|+++++. ++.... +......+++|++|+++++ +.+.... ...++.+++|++|+++++. ++.. +...
T Consensus 50 ~~l~~L~L~~~~-l~~~~~-~~~~l~~l~~L~~L~L~~~----n~l~~~~-p~~l~~l~~L~~L~Ls~n~-l~~~-~p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYP-IPSSLANLPYLNFLYIGGI----NNLVGPI-PPAIAKLTQLHYLYITHTN-VSGA-IPDF 120 (313)
T ss_dssp CCEEEEEEECCC-CSSCEE-CCGGGGGCTTCSEEEEEEE----TTEESCC-CGGGGGCTTCSEEEEEEEC-CEEE-CCGG
T ss_pred ceEEEEECCCCC-ccCCcc-cChhHhCCCCCCeeeCCCC----CcccccC-ChhHhcCCCCCEEECcCCe-eCCc-CCHH
Confidence 578889998864 322000 1123467889999999742 2233221 2457788999999998876 4311 1122
Q ss_pred HhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhh
Q 044164 381 SLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDH 460 (714)
Q Consensus 381 ~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~ 460 (714)
...+++|++|++++|. ++.. ++.....+ ++|++|++++|... +.....+....++|+.|+++.+.+++..+..+
T Consensus 121 ~~~l~~L~~L~Ls~N~-l~~~-~p~~~~~l-~~L~~L~L~~N~l~--~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~- 194 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNA-LSGT-LPPSISSL-PNLVGITFDGNRIS--GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTF- 194 (313)
T ss_dssp GGGCTTCCEEECCSSE-EESC-CCGGGGGC-TTCCEEECCSSCCE--EECCGGGGCCCTTCCEEECCSSEEEEECCGGG-
T ss_pred HhCCCCCCEEeCCCCc-cCCc-CChHHhcC-CCCCeEECcCCccc--CcCCHHHhhhhhcCcEEECcCCeeeccCChHH-
Confidence 3457889999998886 4321 11122344 88999999888743 22222333332388999986555554555544
Q ss_pred hhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCC
Q 044164 461 EIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLE 540 (714)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~ 540 (714)
..+. |+.|.+ .+..++......+.
T Consensus 195 ----------------------------------------------------~~l~-L~~L~L---s~N~l~~~~~~~~~ 218 (313)
T 1ogq_A 195 ----------------------------------------------------ANLN-LAFVDL---SRNMLEGDASVLFG 218 (313)
T ss_dssp ----------------------------------------------------GGCC-CSEEEC---CSSEEEECCGGGCC
T ss_pred ----------------------------------------------------hCCc-ccEEEC---cCCcccCcCCHHHh
Confidence 2333 777776 33344444445577
Q ss_pred CCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhccccccccc
Q 044164 541 NCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLK 620 (714)
Q Consensus 541 ~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~ 620 (714)
++++|+.|.+. ++..... +. .+..+++|+.++|+.|.++|.. |..+..++.++.+++.+
T Consensus 219 ~l~~L~~L~L~--~N~l~~~-~~--------~~~~l~~L~~L~Ls~N~l~~~~---p~~l~~l~~L~~L~Ls~------- 277 (313)
T 1ogq_A 219 SDKNTQKIHLA--KNSLAFD-LG--------KVGLSKNLNGLDLRNNRIYGTL---PQGLTQLKFLHSLNVSF------- 277 (313)
T ss_dssp TTSCCSEEECC--SSEECCB-GG--------GCCCCTTCCEEECCSSCCEECC---CGGGGGCTTCCEEECCS-------
T ss_pred cCCCCCEEECC--CCceeee-cC--------cccccCCCCEEECcCCcccCcC---ChHHhcCcCCCEEECcC-------
Confidence 88888888885 3333322 22 3566788888888888888766 77777788788788777
Q ss_pred cCCCCCCCCccccccccCcchhhhHHHhhhhhheeecc
Q 044164 621 ELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHG 658 (714)
Q Consensus 621 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 658 (714)
|++++.+|+. +++++|+.|.+.|
T Consensus 278 ------------N~l~~~ip~~---~~l~~L~~l~l~~ 300 (313)
T 1ogq_A 278 ------------NNLCGEIPQG---GNLQRFDVSAYAN 300 (313)
T ss_dssp ------------SEEEEECCCS---TTGGGSCGGGTCS
T ss_pred ------------CcccccCCCC---ccccccChHHhcC
Confidence 8888888875 5567777777764
No 54
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.45 E-value=4.6e-16 Score=172.39 Aligned_cols=69 Identities=17% Similarity=0.242 Sum_probs=43.0
Q ss_pred ccccceeeehhcccccccccccCCCCC-CCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccc
Q 044164 516 TKLKYLSLWIAVGELLNPIRLAGLENC-PILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFAL 594 (714)
Q Consensus 516 ~~L~~L~l~~~~~~~l~~l~~~~l~~~-~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~ 594 (714)
++|++|.+ .+..++.++ .+ ++|+.|+++ ++... ..|. .+++|+.++|+.|.+++ +
T Consensus 297 ~~L~~L~l---~~N~l~~i~-----~~~~~L~~L~Ls--~N~l~-~lp~-----------~~~~L~~L~L~~N~l~~-l- 352 (454)
T 1jl5_A 297 PNLYYLNA---SSNEIRSLC-----DLPPSLEELNVS--NNKLI-ELPA-----------LPPRLERLIASFNHLAE-V- 352 (454)
T ss_dssp TTCCEEEC---CSSCCSEEC-----CCCTTCCEEECC--SSCCS-CCCC-----------CCTTCCEEECCSSCCSC-C-
T ss_pred CcCCEEEC---cCCcCCccc-----CCcCcCCEEECC--CCccc-cccc-----------cCCcCCEEECCCCcccc-c-
Confidence 56777777 333444433 23 589999985 33222 2333 25889999999998774 2
Q ss_pred cCCCCCccchhhHHhhhcc
Q 044164 595 TAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 595 ~~p~~~~~l~~~~~~~l~~ 613 (714)
|. .++.++.+++.+
T Consensus 353 --p~---~l~~L~~L~L~~ 366 (454)
T 1jl5_A 353 --PE---LPQNLKQLHVEY 366 (454)
T ss_dssp --CC---CCTTCCEEECCS
T ss_pred --cc---hhhhccEEECCC
Confidence 44 356677777766
No 55
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.44 E-value=2.2e-12 Score=138.48 Aligned_cols=254 Identities=17% Similarity=0.127 Sum_probs=157.3
Q ss_pred HHHHHhcCCCCceEEecCccccCCChHHHHHhchhccC-CCcEEEeccCccccCCCCHHHHHHHHhhC-CCCcEEEe-ee
Q 044164 153 FFALFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAA-SLSHLNLLVGHSFTEGYKSHELLSITSAC-PNLSQLLA-TC 229 (714)
Q Consensus 153 l~~~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~-~L~~L~L~~n~~~c~~i~~~~l~~l~~~~-~~L~~L~L-~c 229 (714)
+..+....++|++|+|+++.............+. .++ +|++|++++|.. .+.....+....... ++|++|++ +|
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l--~~~~~~~l~~~l~~~~~~L~~L~Ls~n 90 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFA-NTPASVTSLNLSGNSL--GFKNSDELVQILAAIPANVTSLNLSGN 90 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-TCCTTCCEEECCSSCG--GGSCHHHHHHHHHTSCTTCCEEECCSS
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHH-hCCCceeEEECcCCCC--CHHHHHHHHHHHhccCCCccEEECcCC
Confidence 4455566677999999999854444322223333 344 899999998632 333344555555554 89999999 55
Q ss_pred ecccccccccCHHHHHHHHhhC-CCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHhc-CCccccee
Q 044164 230 VFDHRFLGFVGDETLLSIASNC-PRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFES-LPLLEELV 307 (714)
Q Consensus 230 ~~~~~~~~~i~~~~l~~l~~~~-~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~~-~p~L~~L~ 307 (714)
.+ .......+......+ ++|++|+++++. +++ .....+...+.. +++|++|+
T Consensus 91 ~l-----~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~--------------------~~~~~l~~~l~~~~~~L~~L~ 144 (362)
T 3goz_A 91 FL-----SYKSSDELVKTLAAIPFTITVLDLGWND-FSS--------------------KSSSEFKQAFSNLPASITSLN 144 (362)
T ss_dssp CG-----GGSCHHHHHHHHHTSCTTCCEEECCSSC-GGG--------------------SCHHHHHHHHTTSCTTCCEEE
T ss_pred cC-----ChHHHHHHHHHHHhCCCCccEEECcCCc-CCc--------------------HHHHHHHHHHHhCCCceeEEE
Confidence 42 122333344434455 799999998763 221 223344444444 46899999
Q ss_pred cccccCcCCCh-HHHHHHhccCC-CccEEEeccccCccccCCCcch---HHHhcCC-cCcceeeeecCCCCCHHHHHHHH
Q 044164 308 LDVGNNVRDTW-PALELLNSKCP-RLKSLKLGQVHGICREIDSSMP---AAGVALW-KGLESLSIKNSADLTDSALIAIS 381 (714)
Q Consensus 308 L~~c~~l~~~~-~~l~~l~~~~~-~L~~L~L~~~~~~c~~i~~~~~---l~~l~~~-~~L~~L~L~~c~~ltd~~l~~l~ 381 (714)
+++| .+++.+ ..+.......+ +|++|+++++ .+++.++ ...+..+ ++|+.|++++|. +++.+...+.
T Consensus 145 Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-----~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~ 217 (362)
T 3goz_A 145 LRGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-----NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELA 217 (362)
T ss_dssp CTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTS-----CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHH
T ss_pred ccCC-cCCHHHHHHHHHHHhcCCccccEeeecCC-----CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHH
Confidence 9987 444433 22334445555 8999999883 3433321 1234556 599999999886 6664444333
Q ss_pred ----hcCCCccEEEEeCCCCCCHHHHHHHHH---HcCCCeeEEEeeCCC--CCCchhHHHHHHhcCCCCCEEE
Q 044164 382 ----LGCSNLTKFEVQGCNKITKMGMQIFAR---VLEKTLVDVRISSCK--YLNTVCSLQALEPIRDRIQRLH 445 (714)
Q Consensus 382 ----~~~~~L~~L~L~~c~~lt~~~l~~l~~---~~~~~L~~L~L~~C~--~l~~~~~l~~l~~~~~~L~~L~ 445 (714)
...++|+.|++++|. +++.+...+.. .+ ++|+.|++++|. .+ +...+..+...++.++.|.
T Consensus 218 ~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l-~~L~~L~L~~n~l~~i-~~~~~~~l~~~~~~l~~L~ 287 (362)
T 3goz_A 218 YIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSL-KHLQTVYLDYDIVKNM-SKEQCKALGAAFPNIQKII 287 (362)
T ss_dssp HHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTT-TTCSEEEEEHHHHTTC-CHHHHHHHHTTSTTCCEEE
T ss_pred HHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcC-CCccEEEeccCCcccc-CHHHHHHHHHHhccCCceE
Confidence 234689999999987 77766555443 44 789999999986 23 3455666665555555554
No 56
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.40 E-value=5.9e-15 Score=155.28 Aligned_cols=244 Identities=14% Similarity=0.088 Sum_probs=169.9
Q ss_pred CCccEEEeccccCccccCCC--cchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHH
Q 044164 329 PRLKSLKLGQVHGICREIDS--SMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIF 406 (714)
Q Consensus 329 ~~L~~L~L~~~~~~c~~i~~--~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l 406 (714)
.++++|++.++ .++. .. ...++.+++|++|+++++..++......+ ..+++|++|++++|. ++... +..
T Consensus 50 ~~l~~L~L~~~-----~l~~~~~~-~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~-l~~~~-p~~ 120 (313)
T 1ogq_A 50 YRVNNLDLSGL-----NLPKPYPI-PSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTN-VSGAI-PDF 120 (313)
T ss_dssp CCEEEEEEECC-----CCSSCEEC-CGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEEC-CEEEC-CGG
T ss_pred ceEEEEECCCC-----CccCCccc-ChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCe-eCCcC-CHH
Confidence 57999999883 3333 21 24788899999999996433432221223 458999999999987 54221 122
Q ss_pred HHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhhh
Q 044164 407 ARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIM 486 (714)
Q Consensus 407 ~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (714)
...+ ++|++|++++|... + .++.....+++|++|+++.+.+++..+..+
T Consensus 121 ~~~l-~~L~~L~Ls~N~l~--~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--------------------------- 169 (313)
T 1ogq_A 121 LSQI-KTLVTLDFSYNALS--G-TLPPSISSLPNLVGITFDGNRISGAIPDSY--------------------------- 169 (313)
T ss_dssp GGGC-TTCCEEECCSSEEE--S-CCCGGGGGCTTCCEEECCSSCCEEECCGGG---------------------------
T ss_pred HhCC-CCCCEEeCCCCccC--C-cCChHHhcCCCCCeEECcCCcccCcCCHHH---------------------------
Confidence 2345 89999999998643 1 122223457899999996556555555555
Q ss_pred cChHHHhHhhhcccccCCCCCCCccccccc-cccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccc
Q 044164 487 MSEEEASLKKKAKCCDGSGNGFSSCSDTWT-KLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFM 565 (714)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~ 565 (714)
..+. +|++|.+ .+..++......+..++ |+.|.++ ++......|.
T Consensus 170 --------------------------~~l~~~L~~L~L---~~N~l~~~~~~~~~~l~-L~~L~Ls--~N~l~~~~~~-- 215 (313)
T 1ogq_A 170 --------------------------GSFSKLFTSMTI---SRNRLTGKIPPTFANLN-LAFVDLS--RNMLEGDASV-- 215 (313)
T ss_dssp --------------------------GCCCTTCCEEEC---CSSEEEEECCGGGGGCC-CSEEECC--SSEEEECCGG--
T ss_pred --------------------------hhhhhcCcEEEC---cCCeeeccCChHHhCCc-ccEEECc--CCcccCcCCH--
Confidence 4454 7888887 33334422233466676 9999996 4433333344
Q ss_pred cccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhH
Q 044164 566 AEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLL 645 (714)
Q Consensus 566 ~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 645 (714)
.+..+++|+.++|+.|.++|.. |. +..++.++.+++.+ |++++.+|.+ +
T Consensus 216 ------~~~~l~~L~~L~L~~N~l~~~~---~~-~~~l~~L~~L~Ls~-------------------N~l~~~~p~~--l 264 (313)
T 1ogq_A 216 ------LFGSDKNTQKIHLAKNSLAFDL---GK-VGLSKNLNGLDLRN-------------------NRIYGTLPQG--L 264 (313)
T ss_dssp ------GCCTTSCCSEEECCSSEECCBG---GG-CCCCTTCCEEECCS-------------------SCCEECCCGG--G
T ss_pred ------HHhcCCCCCEEECCCCceeeec---Cc-ccccCCCCEEECcC-------------------CcccCcCChH--H
Confidence 6789999999999999988755 43 56677788888877 9999999998 9
Q ss_pred HHhhhhhheeec-----cchhHHHHHHHhcCCCccccccccc
Q 044164 646 SQCRSLRKLFIH-----GTANEHFMSFFLKIPTLRDVQLRED 682 (714)
Q Consensus 646 ~~~~~l~~l~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~ 682 (714)
+++++|++|+++ |.+|+. ..+ ++|+.+.+...
T Consensus 265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l----~~L~~l~l~~N 301 (313)
T 1ogq_A 265 TQLKFLHSLNVSFNNLCGEIPQG-GNL----QRFDVSAYANN 301 (313)
T ss_dssp GGCTTCCEEECCSSEEEEECCCS-TTG----GGSCGGGTCSS
T ss_pred hcCcCCCEEECcCCcccccCCCC-ccc----cccChHHhcCC
Confidence 999999999998 788875 555 88888888654
No 57
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.30 E-value=1.7e-12 Score=137.30 Aligned_cols=81 Identities=23% Similarity=0.350 Sum_probs=44.6
Q ss_pred ccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccccccc
Q 044164 516 TKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALT 595 (714)
Q Consensus 516 ~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~ 595 (714)
++|+.|.+ .+..++.++...+.++++|+.|.++ ++......+. .+..+++|+.++|+.|.++ +
T Consensus 192 ~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~Ls--~n~l~~~~~~--------~~~~l~~L~~L~L~~N~l~----~ 254 (330)
T 1xku_A 192 PSLTELHL---DGNKITKVDAASLKGLNNLAKLGLS--FNSISAVDNG--------SLANTPHLRELHLNNNKLV----K 254 (330)
T ss_dssp TTCSEEEC---TTSCCCEECTGGGTTCTTCCEEECC--SSCCCEECTT--------TGGGSTTCCEEECCSSCCS----S
T ss_pred ccCCEEEC---CCCcCCccCHHHhcCCCCCCEEECC--CCcCceeChh--------hccCCCCCCEEECCCCcCc----c
Confidence 45666665 3334444444446667777777774 2222221111 4566777777777777655 1
Q ss_pred CCCCCccchhhHHhhhcc
Q 044164 596 APRGYADLSLWERFYLNG 613 (714)
Q Consensus 596 ~p~~~~~l~~~~~~~l~~ 613 (714)
-|.++.+++.++.+++.+
T Consensus 255 lp~~l~~l~~L~~L~l~~ 272 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHN 272 (330)
T ss_dssp CCTTTTTCSSCCEEECCS
T ss_pred CChhhccCCCcCEEECCC
Confidence 255555666555555555
No 58
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.30 E-value=7.3e-12 Score=118.26 Aligned_cols=105 Identities=13% Similarity=0.152 Sum_probs=85.0
Q ss_pred CCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhc---CCCccEEEEeCCCCCCHHHHHH
Q 044164 329 PRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLG---CSNLTKFEVQGCNKITKMGMQI 405 (714)
Q Consensus 329 ~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~---~~~L~~L~L~~c~~lt~~~l~~ 405 (714)
.+|++|++++ |. +++.+ +..+..|++|++|++++|..|||.++..++.. |++|++|+|++|+.|||.|+..
T Consensus 61 ~~L~~LDLs~----~~-Itd~G-L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATD----SC-IMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEES----CC-CCGGG-GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcC----CC-ccHHH-HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 3588888887 43 66664 56678899999999999999999999999873 6789999999999999999998
Q ss_pred HHHHcCCCeeEEEeeCCCCCCchhH--HHHHHhcCCCCC
Q 044164 406 FARVLEKTLVDVRISSCKYLNTVCS--LQALEPIRDRIQ 442 (714)
Q Consensus 406 l~~~~~~~L~~L~L~~C~~l~~~~~--l~~l~~~~~~L~ 442 (714)
+. .+ ++|++|+|++|+.+ ++.+ ...+...+|+++
T Consensus 135 L~-~~-~~L~~L~L~~c~~I-td~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 135 LH-HF-RNLKYLFLSDLPGV-KEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp GG-GC-TTCCEEEEESCTTC-CCHHHHHHHHHHHCTTCE
T ss_pred Hh-cC-CCCCEEECCCCCCC-CchHHHHHHHHHHCCCcE
Confidence 86 46 99999999999998 4433 345556667765
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.29 E-value=3.7e-12 Score=134.71 Aligned_cols=206 Identities=15% Similarity=0.172 Sum_probs=130.5
Q ss_pred hcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHH
Q 044164 298 ESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSAL 377 (714)
Q Consensus 298 ~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l 377 (714)
..+++|++|++++|. ++... ......+++|++|+++++ .++..+ . ...++|++|+++++. ++....
T Consensus 73 ~~l~~L~~L~L~~n~-l~~~~---~~~~~~l~~L~~L~Ls~n-----~l~~l~--~--~~~~~L~~L~l~~n~-l~~~~~ 138 (330)
T 1xku_A 73 KNLKNLHTLILINNK-ISKIS---PGAFAPLVKLERLYLSKN-----QLKELP--E--KMPKTLQELRVHENE-ITKVRK 138 (330)
T ss_dssp TTCTTCCEEECCSSC-CCCBC---TTTTTTCTTCCEEECCSS-----CCSBCC--S--SCCTTCCEEECCSSC-CCBBCH
T ss_pred ccCCCCCEEECCCCc-CCeeC---HHHhcCCCCCCEEECCCC-----cCCccC--h--hhcccccEEECCCCc-ccccCH
Confidence 456888888888764 32221 122367888999988872 233221 1 123788889888875 443222
Q ss_pred HHHHhcCCCccEEEEeCCCCCCHHHH-HHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEeccccccccc
Q 044164 378 IAISLGCSNLTKFEVQGCNKITKMGM-QIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQY 456 (714)
Q Consensus 378 ~~l~~~~~~L~~L~L~~c~~lt~~~l-~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~ 456 (714)
....++++|+.|++++|. ++..++ ......+ ++|++|++++|.... ++. ...++|++|+++.+.++...+
T Consensus 139 -~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~~L~~L~l~~n~l~~----l~~--~~~~~L~~L~l~~n~l~~~~~ 209 (330)
T 1xku_A 139 -SVFNGLNQMIVVELGTNP-LKSSGIENGAFQGM-KKLSYIRIADTNITT----IPQ--GLPPSLTELHLDGNKITKVDA 209 (330)
T ss_dssp -HHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGC-TTCCEEECCSSCCCS----CCS--SCCTTCSEEECTTSCCCEECT
T ss_pred -hHhcCCccccEEECCCCc-CCccCcChhhccCC-CCcCEEECCCCcccc----CCc--cccccCCEEECCCCcCCccCH
Confidence 233458889999998887 443221 1122344 889999998876431 110 123788898885444444444
Q ss_pred chhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccc
Q 044164 457 SQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRL 536 (714)
Q Consensus 457 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~ 536 (714)
..+ ..+++|+.|.+ .+..++.++.
T Consensus 210 ~~~-----------------------------------------------------~~l~~L~~L~L---s~n~l~~~~~ 233 (330)
T 1xku_A 210 ASL-----------------------------------------------------KGLNNLAKLGL---SFNSISAVDN 233 (330)
T ss_dssp GGG-----------------------------------------------------TTCTTCCEEEC---CSSCCCEECT
T ss_pred HHh-----------------------------------------------------cCCCCCCEEEC---CCCcCceeCh
Confidence 444 45678888887 4455666666
Q ss_pred cCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccccc
Q 044164 537 AGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFA 593 (714)
Q Consensus 537 ~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~ 593 (714)
..+.++++|++|.++ ++.-...|. .+..+++|+.++|+.|.+++..
T Consensus 234 ~~~~~l~~L~~L~L~---~N~l~~lp~--------~l~~l~~L~~L~l~~N~i~~~~ 279 (330)
T 1xku_A 234 GSLANTPHLRELHLN---NNKLVKVPG--------GLADHKYIQVVYLHNNNISAIG 279 (330)
T ss_dssp TTGGGSTTCCEEECC---SSCCSSCCT--------TTTTCSSCCEEECCSSCCCCCC
T ss_pred hhccCCCCCCEEECC---CCcCccCCh--------hhccCCCcCEEECCCCcCCccC
Confidence 567888999999995 333334455 5788899999999999887754
No 60
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.29 E-value=2e-13 Score=142.84 Aligned_cols=251 Identities=12% Similarity=0.083 Sum_probs=146.9
Q ss_pred CcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcc-hHHHhcCCcCcceeeeecCCCCCHHHHHH
Q 044164 301 PLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSM-PAAGVALWKGLESLSIKNSADLTDSALIA 379 (714)
Q Consensus 301 p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~-~l~~l~~~~~L~~L~L~~c~~ltd~~l~~ 379 (714)
++|++|+++++. ++.. .......+++|++|++.+ +.++..+ ....+..+++|+.|+++++. ++. +..
T Consensus 28 ~~l~~L~L~~n~-l~~i---~~~~~~~l~~L~~L~L~~-----n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~--l~~ 95 (306)
T 2z66_A 28 SSATRLELESNK-LQSL---PHGVFDKLTQLTKLSLSS-----NGLSFKGCCSQSDFGTTSLKYLDLSFNG-VIT--MSS 95 (306)
T ss_dssp TTCCEEECCSSC-CCCC---CTTTTTTCTTCSEEECCS-----SCCCEEEEEEHHHHSCSCCCEEECCSCS-EEE--EEE
T ss_pred CCCCEEECCCCc-cCcc---CHhHhhccccCCEEECCC-----CccCcccCcccccccccccCEEECCCCc-ccc--Chh
Confidence 578888888764 3322 122336788888888877 2333211 01244567888888888875 321 111
Q ss_pred HHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccc-cccch
Q 044164 380 ISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESV-EQYSQ 458 (714)
Q Consensus 380 l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~-~~~~~ 458 (714)
....+++|++|++++|. ++..........+ ++|++|++++|... . ........+++|++|+++.+.++. ..+..
T Consensus 96 ~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l-~~L~~L~l~~n~l~--~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 170 (306)
T 2z66_A 96 NFLGLEQLEHLDFQHSN-LKQMSEFSVFLSL-RNLIYLDISHTHTR--V-AFNGIFNGLSSLEVLKMAGNSFQENFLPDI 170 (306)
T ss_dssp EEETCTTCCEEECTTSE-EESSTTTTTTTTC-TTCCEEECTTSCCE--E-CSTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred hcCCCCCCCEEECCCCc-ccccccchhhhhc-cCCCEEECCCCcCC--c-cchhhcccCcCCCEEECCCCccccccchhH
Confidence 12347888888888775 3332211122334 78888888887643 1 112222345788888884333222 22222
Q ss_pred hhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccC
Q 044164 459 DHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAG 538 (714)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~ 538 (714)
+ ..+++|++|++ .+..++.++...
T Consensus 171 ~-----------------------------------------------------~~l~~L~~L~L---s~n~l~~~~~~~ 194 (306)
T 2z66_A 171 F-----------------------------------------------------TELRNLTFLDL---SQCQLEQLSPTA 194 (306)
T ss_dssp C-----------------------------------------------------TTCTTCCEEEC---TTSCCCEECTTT
T ss_pred H-----------------------------------------------------hhCcCCCEEEC---CCCCcCCcCHHH
Confidence 2 34667777777 444556665566
Q ss_pred CCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccc-hhhHHhhhcccccc
Q 044164 539 LENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADL-SLWERFYLNGIENL 617 (714)
Q Consensus 539 l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l-~~~~~~~l~~~~~l 617 (714)
+.++++|+.|.++ + +.-...+. ..+..+++|+.++|+.|.+++.. |..+..+ +.++.+++.+
T Consensus 195 ~~~l~~L~~L~L~--~-N~l~~~~~-------~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~~~~~L~~L~L~~---- 257 (306)
T 2z66_A 195 FNSLSSLQVLNMS--H-NNFFSLDT-------FPYKCLNSLQVLDYSLNHIMTSK---KQELQHFPSSLAFLNLTQ---- 257 (306)
T ss_dssp TTTCTTCCEEECT--T-SCCSBCCS-------GGGTTCTTCCEEECTTSCCCBCS---SSSCCCCCTTCCEEECTT----
T ss_pred hcCCCCCCEEECC--C-CccCccCh-------hhccCcccCCEeECCCCCCcccC---HHHHHhhhccCCEEEccC----
Confidence 7788888888884 3 32221222 14567788888888888887765 6666666 3677777777
Q ss_pred ccccCCCCCCCCccccccccCcchhhhHHHhhhhhheee
Q 044164 618 NLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFI 656 (714)
Q Consensus 618 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 656 (714)
|.+++.-+...+..-....+.+.+
T Consensus 258 ---------------N~~~~~c~~~~~~~~l~~~~~~~~ 281 (306)
T 2z66_A 258 ---------------NDFACTCEHQSFLQWIKDQRQLLV 281 (306)
T ss_dssp ---------------CCEECSGGGHHHHHHHHHTGGGBS
T ss_pred ---------------CCeecccChHHHHHHHHhhhhhhc
Confidence 777776554444444455555443
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.29 E-value=3.8e-13 Score=148.41 Aligned_cols=129 Identities=13% Similarity=0.043 Sum_probs=70.6
Q ss_pred CcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHH
Q 044164 301 PLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAI 380 (714)
Q Consensus 301 p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l 380 (714)
++++.|+++++. ++... ......+++|++|+|++ +.++... ...+..+++|+.|+++++. ++...- ..
T Consensus 64 ~~l~~L~L~~n~-i~~~~---~~~~~~l~~L~~L~Ls~-----n~i~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~-~~ 131 (440)
T 3zyj_A 64 TNTRLLNLHENQ-IQIIK---VNSFKHLRHLEILQLSR-----NHIRTIE-IGAFNGLANLNTLELFDNR-LTTIPN-GA 131 (440)
T ss_dssp TTCSEEECCSCC-CCEEC---TTTTSSCSSCCEEECCS-----SCCCEEC-GGGGTTCSSCCEEECCSSC-CSSCCT-TT
T ss_pred CCCcEEEccCCc-CCeeC---HHHhhCCCCCCEEECCC-----CcCCccC-hhhccCCccCCEEECCCCc-CCeeCH-hH
Confidence 678888888764 32211 12236788888888877 2333321 2456778888888888764 432111 11
Q ss_pred HhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEE
Q 044164 381 SLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHV 446 (714)
Q Consensus 381 ~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l 446 (714)
...+++|++|++++|. ++...-. ....+ ++|++|++++|..+.. ........+++|+.|++
T Consensus 132 ~~~l~~L~~L~L~~N~-i~~~~~~-~~~~l-~~L~~L~l~~~~~l~~--i~~~~~~~l~~L~~L~L 192 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNP-IESIPSY-AFNRI-PSLRRLDLGELKRLSY--ISEGAFEGLSNLRYLNL 192 (440)
T ss_dssp SCSCSSCCEEECCSCC-CCEECTT-TTTTC-TTCCEEECCCCTTCCE--ECTTTTTTCSSCCEEEC
T ss_pred hhccccCceeeCCCCc-ccccCHH-HhhhC-cccCEeCCCCCCCcce--eCcchhhcccccCeecC
Confidence 2346778888887776 4321111 11233 6677777776655421 11111223456666666
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.29 E-value=3.5e-13 Score=149.26 Aligned_cols=129 Identities=15% Similarity=0.048 Sum_probs=69.0
Q ss_pred CcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHH
Q 044164 301 PLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAI 380 (714)
Q Consensus 301 p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l 380 (714)
++|+.|+++++. ++... ......+++|++|++++ +.++... ...+..+++|+.|+++++. ++... ...
T Consensus 75 ~~l~~L~L~~n~-i~~~~---~~~~~~l~~L~~L~Ls~-----n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~-~~~ 142 (452)
T 3zyi_A 75 SNTRYLNLMENN-IQMIQ---ADTFRHLHHLEVLQLGR-----NSIRQIE-VGAFNGLASLNTLELFDNW-LTVIP-SGA 142 (452)
T ss_dssp TTCSEEECCSSC-CCEEC---TTTTTTCTTCCEEECCS-----SCCCEEC-TTTTTTCTTCCEEECCSSC-CSBCC-TTT
T ss_pred CCccEEECcCCc-CceEC---HHHcCCCCCCCEEECCC-----CccCCcC-hhhccCcccCCEEECCCCc-CCccC-hhh
Confidence 578888888764 32211 12236778888888877 2333321 2356677888888888764 43211 111
Q ss_pred HhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEE
Q 044164 381 SLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHV 446 (714)
Q Consensus 381 ~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l 446 (714)
..++++|++|++++|. ++..... ....+ ++|++|++++|..+... .......+++|+.|++
T Consensus 143 ~~~l~~L~~L~L~~N~-l~~~~~~-~~~~l-~~L~~L~l~~~~~l~~i--~~~~~~~l~~L~~L~L 203 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNP-IESIPSY-AFNRV-PSLMRLDLGELKKLEYI--SEGAFEGLFNLKYLNL 203 (452)
T ss_dssp SSSCTTCCEEECCSCC-CCEECTT-TTTTC-TTCCEEECCCCTTCCEE--CTTTTTTCTTCCEEEC
T ss_pred hcccCCCCEEECCCCC-cceeCHh-HHhcC-CcccEEeCCCCCCcccc--ChhhccCCCCCCEEEC
Confidence 2346777777777776 4321111 11233 66677777666554211 1111223455666665
No 63
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.29 E-value=8.1e-14 Score=149.10 Aligned_cols=257 Identities=14% Similarity=0.093 Sum_probs=139.2
Q ss_pred CcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHH
Q 044164 301 PLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAI 380 (714)
Q Consensus 301 p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l 380 (714)
++|++|+++++. ++.. .......+++|++|++.+ +.++... ...++.+++|++|+++++. ++... ...
T Consensus 52 ~~L~~L~l~~n~-i~~~---~~~~~~~l~~L~~L~L~~-----n~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~ 119 (353)
T 2z80_A 52 EAVKSLDLSNNR-ITYI---SNSDLQRCVNLQALVLTS-----NGINTIE-EDSFSSLGSLEHLDLSYNY-LSNLS-SSW 119 (353)
T ss_dssp TTCCEEECTTSC-CCEE---CTTTTTTCTTCCEEECTT-----SCCCEEC-TTTTTTCTTCCEEECCSSC-CSSCC-HHH
T ss_pred ccCcEEECCCCc-Cccc---CHHHhccCCCCCEEECCC-----CccCccC-HhhcCCCCCCCEEECCCCc-CCcCC-HhH
Confidence 578899998864 3221 111236788899999987 2333321 2357788889999998875 44322 122
Q ss_pred HhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhh
Q 044164 381 SLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDH 460 (714)
Q Consensus 381 ~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~ 460 (714)
..++++|++|++++|. ++..........+ ++|++|++++|..+. . ..+.....+++|++|+++.+.++...+..+
T Consensus 120 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l-~~L~~L~l~~n~~~~-~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l- 194 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNP-YKTLGETSLFSHL-TKLQILRVGNMDTFT-K-IQRKDFAGLTFLEELEIDASDLQSYEPKSL- 194 (353)
T ss_dssp HTTCTTCSEEECTTCC-CSSSCSSCSCTTC-TTCCEEEEEESSSCC-E-ECTTTTTTCCEEEEEEEEETTCCEECTTTT-
T ss_pred hCCCccCCEEECCCCC-CcccCchhhhccC-CCCcEEECCCCcccc-c-cCHHHccCCCCCCEEECCCCCcCccCHHHH-
Confidence 3457888999988886 4421110122334 788888888875442 1 111122345778888884344444334444
Q ss_pred hhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCC
Q 044164 461 EIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLE 540 (714)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~ 540 (714)
..+++|++|.+ .+..++.++...+.
T Consensus 195 ----------------------------------------------------~~l~~L~~L~l---~~n~l~~~~~~~~~ 219 (353)
T 2z80_A 195 ----------------------------------------------------KSIQNVSHLIL---HMKQHILLLEIFVD 219 (353)
T ss_dssp ----------------------------------------------------TTCSEEEEEEE---ECSCSTTHHHHHHH
T ss_pred ----------------------------------------------------hccccCCeecC---CCCccccchhhhhh
Confidence 34566777766 33334555444344
Q ss_pred CCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccccccc-CCCCCccchhhHHhhhcccccccc
Q 044164 541 NCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALT-APRGYADLSLWERFYLNGIENLNL 619 (714)
Q Consensus 541 ~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~-~p~~~~~l~~~~~~~l~~~~~l~l 619 (714)
.+++|+.|+++ ++-.....+. .+.....++.++.++|..+.+.+..++ -|..+..++.++.+++.+
T Consensus 220 ~~~~L~~L~L~--~n~l~~~~~~-----~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~------ 286 (353)
T 2z80_A 220 VTSSVECLELR--DTDLDTFHFS-----ELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSR------ 286 (353)
T ss_dssp HTTTEEEEEEE--SCBCTTCCCC-----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCS------
T ss_pred hcccccEEECC--CCcccccccc-----ccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCC------
Confidence 57777777775 2222211111 111223345555556665555543221 133333344444444444
Q ss_pred ccCCCCCCCCccccccccCcchhhhHHHhhhhhheeec
Q 044164 620 KELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIH 657 (714)
Q Consensus 620 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 657 (714)
|+++ ++|.. .++++++|++|+++
T Consensus 287 -------------N~l~-~i~~~-~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 287 -------------NQLK-SVPDG-IFDRLTSLQKIWLH 309 (353)
T ss_dssp -------------SCCC-CCCTT-TTTTCTTCCEEECC
T ss_pred -------------CCCC-ccCHH-HHhcCCCCCEEEee
Confidence 6666 66654 23677788888877
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.27 E-value=5.7e-13 Score=140.33 Aligned_cols=246 Identities=12% Similarity=0.094 Sum_probs=162.5
Q ss_pred HHHHHHHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCC
Q 044164 291 TALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSA 370 (714)
Q Consensus 291 ~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~ 370 (714)
..+..+...+++|++|+++++. ++... ......+++|++|++++ +.++... .+..+++|+.|++++|.
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~-l~~~~---~~~~~~l~~L~~L~Ls~-----n~l~~~~---~~~~l~~L~~L~Ls~n~ 91 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNP-LSQIS---AADLAPFTKLELLNLSS-----NVLYETL---DLESLSTLRTLDLNNNY 91 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSC-CCCCC---HHHHTTCTTCCEEECTT-----SCCEEEE---EETTCTTCCEEECCSSE
T ss_pred hhHHHHhccCCCCCEEECcCCc-cCcCC---HHHhhCCCcCCEEECCC-----CcCCcch---hhhhcCCCCEEECcCCc
Confidence 3345666678899999999974 44432 23347899999999988 3344332 37788999999999885
Q ss_pred CCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEeccc
Q 044164 371 DLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVW 450 (714)
Q Consensus 371 ~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~ 450 (714)
++.. . .+++|+.|++++|. ++.... ..+ ++|++|++++|.... . .+.....+++|++|+++.+.
T Consensus 92 -l~~l-----~-~~~~L~~L~l~~n~-l~~~~~----~~~-~~L~~L~l~~N~l~~-~--~~~~~~~l~~L~~L~Ls~N~ 155 (317)
T 3o53_A 92 -VQEL-----L-VGPSIETLHAANNN-ISRVSC----SRG-QGKKNIYLANNKITM-L--RDLDEGCRSRVQYLDLKLNE 155 (317)
T ss_dssp -EEEE-----E-ECTTCCEEECCSSC-CSEEEE----CCC-SSCEEEECCSSCCCS-G--GGBCTGGGSSEEEEECTTSC
T ss_pred -cccc-----c-CCCCcCEEECCCCc-cCCcCc----ccc-CCCCEEECCCCCCCC-c--cchhhhccCCCCEEECCCCC
Confidence 4321 1 35899999999887 554321 123 789999999887541 1 11111335789999885455
Q ss_pred ccccccchhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccc
Q 044164 451 ESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGEL 530 (714)
Q Consensus 451 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 530 (714)
++...+..+ ...+++|++|.+ .+..
T Consensus 156 l~~~~~~~~----------------------------------------------------~~~l~~L~~L~L---~~N~ 180 (317)
T 3o53_A 156 IDTVNFAEL----------------------------------------------------AASSDTLEHLNL---QYNF 180 (317)
T ss_dssp CCEEEGGGG----------------------------------------------------GGGTTTCCEEEC---TTSC
T ss_pred CCcccHHHH----------------------------------------------------hhccCcCCEEEC---CCCc
Confidence 444433333 024677888887 4455
Q ss_pred cccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhh
Q 044164 531 LNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFY 610 (714)
Q Consensus 531 l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~ 610 (714)
++.++. ...+++|++|.++ + +.-...|. .+..+++|+.++|+.|.+++ + |..+..++.++.++
T Consensus 181 l~~~~~--~~~l~~L~~L~Ls--~-N~l~~l~~--------~~~~l~~L~~L~L~~N~l~~-l---~~~~~~l~~L~~L~ 243 (317)
T 3o53_A 181 IYDVKG--QVVFAKLKTLDLS--S-NKLAFMGP--------EFQSAAGVTWISLRNNKLVL-I---EKALRFSQNLEHFD 243 (317)
T ss_dssp CCEEEC--CCCCTTCCEEECC--S-SCCCEECG--------GGGGGTTCSEEECTTSCCCE-E---CTTCCCCTTCCEEE
T ss_pred Cccccc--ccccccCCEEECC--C-CcCCcchh--------hhcccCcccEEECcCCcccc-h---hhHhhcCCCCCEEE
Confidence 666643 3358889999885 3 32222333 46678888999999888774 2 66667777777777
Q ss_pred hccccccccccCCCCCCCCccccccc-cCcchhhhHHHhhhhhheeec
Q 044164 611 LNGIENLNLKELNYWPPQDMDVHQRS-LSLPAAGLLSQCRSLRKLFIH 657 (714)
Q Consensus 611 l~~~~~l~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~ 657 (714)
+.+ |.++ +.+|.. ++++++|+.|.+.
T Consensus 244 l~~-------------------N~~~~~~~~~~--~~~~~~L~~l~l~ 270 (317)
T 3o53_A 244 LRG-------------------NGFHCGTLRDF--FSKNQRVQTVAKQ 270 (317)
T ss_dssp CTT-------------------CCCBHHHHHHH--HHTCHHHHHHHHH
T ss_pred ccC-------------------CCccCcCHHHH--HhccccceEEECC
Confidence 777 7776 666655 7777888877765
No 65
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.25 E-value=3.7e-13 Score=143.95 Aligned_cols=253 Identities=13% Similarity=0.093 Sum_probs=161.8
Q ss_pred CCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHH
Q 044164 328 CPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFA 407 (714)
Q Consensus 328 ~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~ 407 (714)
.++|++|++++ +.++... ...++.+++|+.|+++++. +++..... ..++++|++|++++|. ++..... ..
T Consensus 51 ~~~L~~L~l~~-----n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~Ls~n~-l~~~~~~-~~ 120 (353)
T 2z80_A 51 TEAVKSLDLSN-----NRITYIS-NSDLQRCVNLQALVLTSNG-INTIEEDS-FSSLGSLEHLDLSYNY-LSNLSSS-WF 120 (353)
T ss_dssp CTTCCEEECTT-----SCCCEEC-TTTTTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSSC-CSSCCHH-HH
T ss_pred cccCcEEECCC-----CcCcccC-HHHhccCCCCCEEECCCCc-cCccCHhh-cCCCCCCCEEECCCCc-CCcCCHh-Hh
Confidence 35899999988 3344432 2367889999999999885 55322112 2458999999999987 5543222 23
Q ss_pred HHcCCCeeEEEeeCCCCCCchhHHHH--HHhcCCCCCEEEE-ecccccccccchhhhhhccCCCCccccCCccccchhHh
Q 044164 408 RVLEKTLVDVRISSCKYLNTVCSLQA--LEPIRDRIQRLHV-DCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKR 484 (714)
Q Consensus 408 ~~~~~~L~~L~L~~C~~l~~~~~l~~--l~~~~~~L~~L~l-~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 484 (714)
..+ ++|++|++++|... . ++. ....+++|++|++ +|...+...+..+
T Consensus 121 ~~l-~~L~~L~L~~n~l~-~---l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~------------------------- 170 (353)
T 2z80_A 121 KPL-SSLTFLNLLGNPYK-T---LGETSLFSHLTKLQILRVGNMDTFTKIQRKDF------------------------- 170 (353)
T ss_dssp TTC-TTCSEEECTTCCCS-S---SCSSCSCTTCTTCCEEEEEESSSCCEECTTTT-------------------------
T ss_pred CCC-ccCCEEECCCCCCc-c---cCchhhhccCCCCcEEECCCCccccccCHHHc-------------------------
Confidence 445 89999999998643 1 111 2345789999999 5544444433443
Q ss_pred hhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCccc
Q 044164 485 IMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVF 564 (714)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~ 564 (714)
..+++|+.|.+ .+..++......+.++++|++|.++ + +.....|.
T Consensus 171 ----------------------------~~l~~L~~L~l---~~n~l~~~~~~~l~~l~~L~~L~l~--~-n~l~~~~~- 215 (353)
T 2z80_A 171 ----------------------------AGLTFLEELEI---DASDLQSYEPKSLKSIQNVSHLILH--M-KQHILLLE- 215 (353)
T ss_dssp ----------------------------TTCCEEEEEEE---EETTCCEECTTTTTTCSEEEEEEEE--C-SCSTTHHH-
T ss_pred ----------------------------cCCCCCCEEEC---CCCCcCccCHHHHhccccCCeecCC--C-Cccccchh-
Confidence 45788898888 4455666666678999999999996 3 33222222
Q ss_pred ccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhh
Q 044164 565 MAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGL 644 (714)
Q Consensus 565 ~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~ 644 (714)
..+..+++|+.++|+.|.+.+.....-......+. ++.+.|+++.+.. |... .+|.+
T Consensus 216 ------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~--------l~~l~L~~~~l~~------~~l~-~l~~~-- 272 (353)
T 2z80_A 216 ------IFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL--------IKKFTFRNVKITD------ESLF-QVMKL-- 272 (353)
T ss_dssp ------HHHHHTTTEEEEEEESCBCTTCCCC------CCCC--------CCEEEEESCBCCH------HHHH-HHHHH--
T ss_pred ------hhhhhcccccEEECCCCccccccccccccccccch--------hhccccccccccC------cchh-hhHHH--
Confidence 13456899999999999988865211111111222 2222333332211 1111 57776
Q ss_pred HHHhhhhhheeec----cchhHHH-HHHHhcCCCccccccccc
Q 044164 645 LSQCRSLRKLFIH----GTANEHF-MSFFLKIPTLRDVQLRED 682 (714)
Q Consensus 645 ~~~~~~l~~l~~~----~~~~~~~-~~~~~~~~~l~~~~~~~~ 682 (714)
++++++|++|+++ .++|+.+ ..+ ++|+.+.++..
T Consensus 273 l~~l~~L~~L~Ls~N~l~~i~~~~~~~l----~~L~~L~L~~N 311 (353)
T 2z80_A 273 LNQISGLLELEFSRNQLKSVPDGIFDRL----TSLQKIWLHTN 311 (353)
T ss_dssp HHTCTTCCEEECCSSCCCCCCTTTTTTC----TTCCEEECCSS
T ss_pred HhcccCCCEEECCCCCCCccCHHHHhcC----CCCCEEEeeCC
Confidence 8899999999999 5566653 444 89999988755
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.22 E-value=9.2e-13 Score=136.36 Aligned_cols=208 Identities=13% Similarity=0.087 Sum_probs=119.3
Q ss_pred CcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHH
Q 044164 301 PLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAI 380 (714)
Q Consensus 301 p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l 380 (714)
++|++|+++++. ++.. .......+++|++|++.++ .++... ...++.+++|++|+++++..++......
T Consensus 32 ~~l~~L~l~~n~-i~~~---~~~~~~~~~~L~~L~l~~n-----~l~~~~-~~~~~~l~~L~~L~l~~n~~l~~~~~~~- 100 (285)
T 1ozn_A 32 AASQRIFLHGNR-ISHV---PAASFRACRNLTILWLHSN-----VLARID-AAAFTGLALLEQLDLSDNAQLRSVDPAT- 100 (285)
T ss_dssp TTCSEEECTTSC-CCEE---CTTTTTTCTTCCEEECCSS-----CCCEEC-TTTTTTCTTCCEEECCSCTTCCCCCTTT-
T ss_pred CCceEEEeeCCc-CCcc---CHHHcccCCCCCEEECCCC-----ccceeC-HhhcCCccCCCEEeCCCCCCccccCHHH-
Confidence 678999998764 3221 1122367888899988872 333321 2356778888888888875443321112
Q ss_pred HhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhh
Q 044164 381 SLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDH 460 (714)
Q Consensus 381 ~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~ 460 (714)
...+++|++|++++|. ++.... .....+ ++|++|++++|.... ........+++|++|+++.+.++...+..+
T Consensus 101 ~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l-~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~- 173 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRCG-LQELGP-GLFRGL-AALQYLYLQDNALQA---LPDDTFRDLGNLTHLFLHGNRISSVPERAF- 173 (285)
T ss_dssp TTTCTTCCEEECTTSC-CCCCCT-TTTTTC-TTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCEECTTTT-
T ss_pred hcCCcCCCEEECCCCc-CCEECH-hHhhCC-cCCCEEECCCCcccc---cCHhHhccCCCccEEECCCCcccccCHHHh-
Confidence 2347888888888876 443211 112334 788888888776431 111112345778888774334333222222
Q ss_pred hhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCC
Q 044164 461 EIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLE 540 (714)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~ 540 (714)
..+++|+.|.+ .+..++.+....+.
T Consensus 174 ----------------------------------------------------~~l~~L~~L~l---~~n~l~~~~~~~~~ 198 (285)
T 1ozn_A 174 ----------------------------------------------------RGLHSLDRLLL---HQNRVAHVHPHAFR 198 (285)
T ss_dssp ----------------------------------------------------TTCTTCCEEEC---CSSCCCEECTTTTT
T ss_pred ----------------------------------------------------cCccccCEEEC---CCCcccccCHhHcc
Confidence 34566777766 34445555455577
Q ss_pred CCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccc
Q 044164 541 NCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 541 ~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~ 591 (714)
++++|+.|+++ ++.... .|. ..+..+++|+.++|+.|.+++
T Consensus 199 ~l~~L~~L~l~--~n~l~~-~~~-------~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 199 DLGRLMTLYLF--ANNLSA-LPT-------EALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TCTTCCEEECC--SSCCSC-CCH-------HHHTTCTTCCEEECCSSCEEC
T ss_pred CcccccEeeCC--CCcCCc-CCH-------HHcccCcccCEEeccCCCccC
Confidence 77777777774 322222 222 146677777777777777654
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.22 E-value=3e-12 Score=131.65 Aligned_cols=87 Identities=9% Similarity=-0.038 Sum_probs=54.9
Q ss_pred ccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccccc
Q 044164 514 TWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFA 593 (714)
Q Consensus 514 ~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~ 593 (714)
.+++|+.|.+ .+..++.++...++++++|+.|.++ ++......|. .+..+++|+.++|+.|.+.|
T Consensus 155 ~l~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~L~--~N~l~~~~~~--------~~~~l~~L~~L~l~~N~~~~-- 219 (272)
T 3rfs_A 155 KLTNLTELDL---SYNQLQSLPEGVFDKLTQLKDLRLY--QNQLKSVPDG--------VFDRLTSLQYIWLHDNPWDC-- 219 (272)
T ss_dssp TCTTCCEEEC---CSSCCCCCCTTTTTTCTTCCEEECC--SSCCSCCCTT--------TTTTCTTCCEEECCSSCBCC--
T ss_pred cCccCCEEEC---CCCCcCccCHHHhcCCccCCEEECC--CCcCCccCHH--------HHhCCcCCCEEEccCCCccc--
Confidence 3556666666 3344555555556778888888885 3322222222 46778888888888887665
Q ss_pred ccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchh
Q 044164 594 LTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAA 642 (714)
Q Consensus 594 ~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 642 (714)
+++.++.+++.+ |.++|.+|..
T Consensus 220 --------~~~~l~~l~~~~-------------------n~~~g~ip~~ 241 (272)
T 3rfs_A 220 --------TCPGIRYLSEWI-------------------NKHSGVVRNS 241 (272)
T ss_dssp --------CTTTTHHHHHHH-------------------HHTGGGBBCT
T ss_pred --------cCcHHHHHHHHH-------------------HhCCCcccCc
Confidence 344566666666 7888888765
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.22 E-value=5.2e-12 Score=133.76 Aligned_cols=238 Identities=16% Similarity=0.105 Sum_probs=124.3
Q ss_pred cccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHH
Q 044164 302 LLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAIS 381 (714)
Q Consensus 302 ~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~ 381 (714)
+++.++++++. ++.-. . .-.++|+.|++.++ .++... ...++.+++|++|++++|. ++......+
T Consensus 34 ~l~~l~~~~~~-l~~ip---~---~~~~~l~~L~l~~n-----~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~- 98 (332)
T 2ft3_A 34 HLRVVQCSDLG-LKAVP---K---EISPDTTLLDLQNN-----DISELR-KDDFKGLQHLYALVLVNNK-ISKIHEKAF- 98 (332)
T ss_dssp ETTEEECCSSC-CSSCC---S---CCCTTCCEEECCSS-----CCCEEC-TTTTTTCTTCCEEECCSSC-CCEECGGGS-
T ss_pred cCCEEECCCCC-ccccC---C---CCCCCCeEEECCCC-----cCCccC-HhHhhCCCCCcEEECCCCc-cCccCHhHh-
Confidence 57777776653 22110 0 12357888888762 233321 2356677888888888765 443211222
Q ss_pred hcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccc--cccchh
Q 044164 382 LGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESV--EQYSQD 459 (714)
Q Consensus 382 ~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~--~~~~~l 459 (714)
..+++|++|++++|. ++. +....+++|++|++++|.... ........+++|+.|+++.+.++. ..+..+
T Consensus 99 ~~l~~L~~L~L~~n~-l~~-----l~~~~~~~L~~L~l~~n~i~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 169 (332)
T 2ft3_A 99 SPLRKLQKLYISKNH-LVE-----IPPNLPSSLVELRIHDNRIRK---VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAF 169 (332)
T ss_dssp TTCTTCCEEECCSSC-CCS-----CCSSCCTTCCEEECCSSCCCC---CCSGGGSSCSSCCEEECCSCCCBGGGSCTTSS
T ss_pred hCcCCCCEEECCCCc-CCc-----cCccccccCCEEECCCCccCc---cCHhHhCCCccCCEEECCCCccccCCCCcccc
Confidence 347788888887776 442 111122678888888776431 111222346778888884333221 111111
Q ss_pred hhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCC
Q 044164 460 HEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGL 539 (714)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l 539 (714)
... .+..++++... ... ......++|+.|.+ .+..++.++...+
T Consensus 170 -----------~~l-~L~~L~l~~n~----------------l~~-----l~~~~~~~L~~L~l---~~n~i~~~~~~~l 213 (332)
T 2ft3_A 170 -----------DGL-KLNYLRISEAK----------------LTG-----IPKDLPETLNELHL---DHNKIQAIELEDL 213 (332)
T ss_dssp -----------CSC-CCSCCBCCSSB----------------CSS-----CCSSSCSSCSCCBC---CSSCCCCCCTTSS
T ss_pred -----------cCC-ccCEEECcCCC----------------CCc-----cCccccCCCCEEEC---CCCcCCccCHHHh
Confidence 000 22222222210 000 00012256777766 4445555555567
Q ss_pred CCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhcc
Q 044164 540 ENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 540 ~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~ 613 (714)
.++++|+.|.++ ++......|. .+..+++|+.++|+.|.++ .+ |.++..++.++.+++.+
T Consensus 214 ~~l~~L~~L~L~--~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~-~l---p~~l~~l~~L~~L~l~~ 273 (332)
T 2ft3_A 214 LRYSKLYRLGLG--HNQIRMIENG--------SLSFLPTLRELHLDNNKLS-RV---PAGLPDLKLLQVVYLHT 273 (332)
T ss_dssp TTCTTCSCCBCC--SSCCCCCCTT--------GGGGCTTCCEEECCSSCCC-BC---CTTGGGCTTCCEEECCS
T ss_pred cCCCCCCEEECC--CCcCCcCChh--------HhhCCCCCCEEECCCCcCe-ec---ChhhhcCccCCEEECCC
Confidence 778888888875 3322222222 5667778888888888766 22 66666666666666665
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.21 E-value=1.2e-12 Score=135.38 Aligned_cols=107 Identities=16% Similarity=0.141 Sum_probs=59.6
Q ss_pred CCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHH
Q 044164 328 CPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFA 407 (714)
Q Consensus 328 ~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~ 407 (714)
.++|++|++.+ +.++... ...++.+++|++|+++++. ++...... ..++++|++|++++|..++......+
T Consensus 31 ~~~l~~L~l~~-----n~i~~~~-~~~~~~~~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~~l~~~~~~~~- 101 (285)
T 1ozn_A 31 PAASQRIFLHG-----NRISHVP-AASFRACRNLTILWLHSNV-LARIDAAA-FTGLALLEQLDLSDNAQLRSVDPATF- 101 (285)
T ss_dssp CTTCSEEECTT-----SCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSCTTCCCCCTTTT-
T ss_pred CCCceEEEeeC-----CcCCccC-HHHcccCCCCCEEECCCCc-cceeCHhh-cCCccCCCEEeCCCCCCccccCHHHh-
Confidence 46888998887 3344331 2356778888888888774 44321112 23467788888877764433211111
Q ss_pred HHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEe
Q 044164 408 RVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVD 447 (714)
Q Consensus 408 ~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~ 447 (714)
..+ ++|++|++++|.... ..+.....+++|++|+++
T Consensus 102 ~~l-~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~ 137 (285)
T 1ozn_A 102 HGL-GRLHTLHLDRCGLQE---LGPGLFRGLAALQYLYLQ 137 (285)
T ss_dssp TTC-TTCCEEECTTSCCCC---CCTTTTTTCTTCCEEECC
T ss_pred cCC-cCCCEEECCCCcCCE---ECHhHhhCCcCCCEEECC
Confidence 223 677777777765331 111112335666666663
No 70
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.21 E-value=8e-13 Score=140.04 Aligned_cols=254 Identities=17% Similarity=0.186 Sum_probs=141.1
Q ss_pred hcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHH
Q 044164 298 ESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSAL 377 (714)
Q Consensus 298 ~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l 377 (714)
..+++|++|++++|. ++... ......+++|++|+++++ .++..+ .. ..++|++|+++++. ++...
T Consensus 75 ~~l~~L~~L~L~~n~-l~~~~---~~~~~~l~~L~~L~L~~n-----~l~~l~--~~--~~~~L~~L~l~~n~-i~~~~- 139 (332)
T 2ft3_A 75 KGLQHLYALVLVNNK-ISKIH---EKAFSPLRKLQKLYISKN-----HLVEIP--PN--LPSSLVELRIHDNR-IRKVP- 139 (332)
T ss_dssp TTCTTCCEEECCSSC-CCEEC---GGGSTTCTTCCEEECCSS-----CCCSCC--SS--CCTTCCEEECCSSC-CCCCC-
T ss_pred hCCCCCcEEECCCCc-cCccC---HhHhhCcCCCCEEECCCC-----cCCccC--cc--ccccCCEEECCCCc-cCccC-
Confidence 356788888888764 32211 122366788888888762 233221 11 12678888888764 33211
Q ss_pred HHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccc
Q 044164 378 IAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYS 457 (714)
Q Consensus 378 ~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~ 457 (714)
.....++++|+.|++++|. ++..++..-.... .+|++|++++|.... ++. ...++|++|+++.+.++...+.
T Consensus 140 ~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~-l~L~~L~l~~n~l~~----l~~--~~~~~L~~L~l~~n~i~~~~~~ 211 (332)
T 2ft3_A 140 KGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDG-LKLNYLRISEAKLTG----IPK--DLPETLNELHLDHNKIQAIELE 211 (332)
T ss_dssp SGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCS-CCCSCCBCCSSBCSS----CCS--SSCSSCSCCBCCSSCCCCCCTT
T ss_pred HhHhCCCccCCEEECCCCc-cccCCCCcccccC-CccCEEECcCCCCCc----cCc--cccCCCCEEECCCCcCCccCHH
Confidence 1122447788888887776 4432211110011 267777777765431 110 1225777777743343333333
Q ss_pred hhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhccccccccccc
Q 044164 458 QDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLA 537 (714)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~ 537 (714)
.+ ..+++|+.|.+ .+..++.++..
T Consensus 212 ~l-----------------------------------------------------~~l~~L~~L~L---~~N~l~~~~~~ 235 (332)
T 2ft3_A 212 DL-----------------------------------------------------LRYSKLYRLGL---GHNQIRMIENG 235 (332)
T ss_dssp SS-----------------------------------------------------TTCTTCSCCBC---CSSCCCCCCTT
T ss_pred Hh-----------------------------------------------------cCCCCCCEEEC---CCCcCCcCChh
Confidence 33 45678888888 45556666665
Q ss_pred CCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhcccccc
Q 044164 538 GLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENL 617 (714)
Q Consensus 538 ~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l 617 (714)
.+..+++|++|.++ ++.-...|. .+..+++|+.++|+.|.+++.. +..+..+.. +....
T Consensus 236 ~~~~l~~L~~L~L~---~N~l~~lp~--------~l~~l~~L~~L~l~~N~l~~~~---~~~~~~~~~-------~~~~~ 294 (332)
T 2ft3_A 236 SLSFLPTLRELHLD---NNKLSRVPA--------GLPDLKLLQVVYLHTNNITKVG---VNDFCPVGF-------GVKRA 294 (332)
T ss_dssp GGGGCTTCCEEECC---SSCCCBCCT--------TGGGCTTCCEEECCSSCCCBCC---TTSSSCSSC-------CSSSC
T ss_pred HhhCCCCCCEEECC---CCcCeecCh--------hhhcCccCCEEECCCCCCCccC---hhHcccccc-------ccccc
Confidence 67889999999995 333334455 5788999999999999988755 222222110 00011
Q ss_pred ccccCCCCCCCCccccccc--cCcchhhhHHHhhhhhheeeccc
Q 044164 618 NLKELNYWPPQDMDVHQRS--LSLPAAGLLSQCRSLRKLFIHGT 659 (714)
Q Consensus 618 ~l~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~~~ 659 (714)
+|+.|++.- |..+ ...|.+ +..|++|+.|.+.|.
T Consensus 295 ~l~~L~l~~------N~~~~~~~~~~~--~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 295 YYNGISLFN------NPVPYWEVQPAT--FRCVTDRLAIQFGNY 330 (332)
T ss_dssp CBSEEECCS------SSSCGGGSCGGG--GTTBCCSTTEEC---
T ss_pred cccceEeec------CcccccccCccc--ccccchhhhhhcccc
Confidence 333443332 4443 233444 667888888887753
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.20 E-value=1.2e-12 Score=146.27 Aligned_cols=240 Identities=12% Similarity=0.083 Sum_probs=164.4
Q ss_pred HhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHH
Q 044164 297 FESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSA 376 (714)
Q Consensus 297 ~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~ 376 (714)
...+++|+.|+++++. ++... ......+++|++|+|++ +.+++.. .+..+++|+.|++++|. +++.
T Consensus 30 ~~~~~~L~~L~Ls~n~-l~~~~---~~~~~~l~~L~~L~Ls~-----N~l~~~~---~l~~l~~L~~L~Ls~N~-l~~l- 95 (487)
T 3oja_A 30 RQSAWNVKELDLSGNP-LSQIS---AADLAPFTKLELLNLSS-----NVLYETL---DLESLSTLRTLDLNNNY-VQEL- 95 (487)
T ss_dssp STTGGGCCEEECCSSC-CCCCC---GGGGTTCTTCCEEECTT-----SCCEEEE---ECTTCTTCCEEECCSSE-EEEE-
T ss_pred cccCCCccEEEeeCCc-CCCCC---HHHHhCCCCCCEEEeeC-----CCCCCCc---ccccCCCCCEEEecCCc-CCCC-
Confidence 3445689999999974 43331 12347899999999998 3344332 27788999999999985 4321
Q ss_pred HHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEeccccccccc
Q 044164 377 LIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQY 456 (714)
Q Consensus 377 l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~ 456 (714)
. ..++|+.|++++|. ++.... ..+ ++|+.|++++|... +. .+.....+++|+.|+++.+.+++..+
T Consensus 96 ----~-~~~~L~~L~L~~N~-l~~~~~----~~l-~~L~~L~L~~N~l~--~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (487)
T 3oja_A 96 ----L-VGPSIETLHAANNN-ISRVSC----SRG-QGKKNIYLANNKIT--ML-RDLDEGCRSRVQYLDLKLNEIDTVNF 161 (487)
T ss_dssp ----E-ECTTCCEEECCSSC-CCCEEE----CCC-SSCEEEECCSSCCC--SG-GGBCGGGGSSEEEEECTTSCCCEEEG
T ss_pred ----C-CCCCcCEEECcCCc-CCCCCc----ccc-CCCCEEECCCCCCC--CC-CchhhcCCCCCCEEECCCCCCCCcCh
Confidence 1 24899999999987 554321 123 89999999998754 21 11112346899999996666555555
Q ss_pred chhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccc
Q 044164 457 SQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRL 536 (714)
Q Consensus 457 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~ 536 (714)
..+ ...+++|+.|++ .+..++.++.
T Consensus 162 ~~l----------------------------------------------------~~~l~~L~~L~L---s~N~l~~~~~ 186 (487)
T 3oja_A 162 AEL----------------------------------------------------AASSDTLEHLNL---QYNFIYDVKG 186 (487)
T ss_dssp GGG----------------------------------------------------GGGTTTCCEEEC---TTSCCCEEEC
T ss_pred HHH----------------------------------------------------hhhCCcccEEec---CCCccccccc
Confidence 544 025678888888 4555666643
Q ss_pred cCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhccccc
Q 044164 537 AGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIEN 616 (714)
Q Consensus 537 ~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~ 616 (714)
+..+++|+.|.++ +|..+. .|. .+..+++|+.++|+.|.++| + |..+..++.++.+++.+
T Consensus 187 --~~~l~~L~~L~Ls--~N~l~~-~~~--------~~~~l~~L~~L~Ls~N~l~~-l---p~~l~~l~~L~~L~l~~--- 246 (487)
T 3oja_A 187 --QVVFAKLKTLDLS--SNKLAF-MGP--------EFQSAAGVTWISLRNNKLVL-I---EKALRFSQNLEHFDLRG--- 246 (487)
T ss_dssp --CCCCTTCCEEECC--SSCCCE-ECG--------GGGGGTTCSEEECTTSCCCE-E---CTTCCCCTTCCEEECTT---
T ss_pred --cccCCCCCEEECC--CCCCCC-CCH--------hHcCCCCccEEEecCCcCcc-c---chhhccCCCCCEEEcCC---
Confidence 4468999999995 333332 333 46788999999999999886 3 66677777777777777
Q ss_pred cccccCCCCCCCCccccccc-cCcchhhhHHHhhhhhheeec
Q 044164 617 LNLKELNYWPPQDMDVHQRS-LSLPAAGLLSQCRSLRKLFIH 657 (714)
Q Consensus 617 l~l~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~ 657 (714)
|.+. +.+|.. +..++.|+.|.+.
T Consensus 247 ----------------N~l~c~~~~~~--~~~l~~L~~l~~~ 270 (487)
T 3oja_A 247 ----------------NGFHCGTLRDF--FSKNQRVQTVAKQ 270 (487)
T ss_dssp ----------------CCBCHHHHHHH--HTTCHHHHHHHHH
T ss_pred ----------------CCCcCcchHHH--HHhCCCCcEEecc
Confidence 7776 666665 7778888877774
No 72
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.18 E-value=9.9e-13 Score=137.55 Aligned_cols=228 Identities=13% Similarity=0.071 Sum_probs=151.2
Q ss_pred CCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHH--HHHHHhcCCCccEEEEeCCCCCCHHHHHH
Q 044164 328 CPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSA--LIAISLGCSNLTKFEVQGCNKITKMGMQI 405 (714)
Q Consensus 328 ~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~--l~~l~~~~~~L~~L~L~~c~~lt~~~l~~ 405 (714)
.++|++|++.++ .++... ...++.+++|+.|+++++. ++..+ ...+ .++++|++|++++|. ++. +..
T Consensus 27 ~~~l~~L~L~~n-----~l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~-~~~~~L~~L~Ls~n~-i~~--l~~ 95 (306)
T 2z66_A 27 PSSATRLELESN-----KLQSLP-HGVFDKLTQLTKLSLSSNG-LSFKGCCSQSD-FGTTSLKYLDLSFNG-VIT--MSS 95 (306)
T ss_dssp CTTCCEEECCSS-----CCCCCC-TTTTTTCTTCSEEECCSSC-CCEEEEEEHHH-HSCSCCCEEECCSCS-EEE--EEE
T ss_pred CCCCCEEECCCC-----ccCccC-HhHhhccccCCEEECCCCc-cCcccCccccc-ccccccCEEECCCCc-ccc--Chh
Confidence 358999999883 334321 2346789999999999876 54221 1222 248999999999987 432 111
Q ss_pred HHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhh
Q 044164 406 FARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRI 485 (714)
Q Consensus 406 l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (714)
....+ ++|++|++++|.... . ........+++|++|+++...++...+..+
T Consensus 96 ~~~~l-~~L~~L~l~~n~l~~-~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-------------------------- 146 (306)
T 2z66_A 96 NFLGL-EQLEHLDFQHSNLKQ-M-SEFSVFLSLRNLIYLDISHTHTRVAFNGIF-------------------------- 146 (306)
T ss_dssp EEETC-TTCCEEECTTSEEES-S-TTTTTTTTCTTCCEEECTTSCCEECSTTTT--------------------------
T ss_pred hcCCC-CCCCEEECCCCcccc-c-ccchhhhhccCCCEEECCCCcCCccchhhc--------------------------
Confidence 12234 899999999876431 1 111123456899999995444333333333
Q ss_pred hcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhccccccc-ccccCCCCCCCcceEEEEEeccccCCCCccc
Q 044164 486 MMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNP-IRLAGLENCPILEEIQIKVVGDCRNQQKPVF 564 (714)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~-l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~ 564 (714)
..+++|++|.+ .+..++. .....+.++++|+.|.++ ++......|.
T Consensus 147 ---------------------------~~l~~L~~L~l---~~n~l~~~~~~~~~~~l~~L~~L~Ls--~n~l~~~~~~- 193 (306)
T 2z66_A 147 ---------------------------NGLSSLEVLKM---AGNSFQENFLPDIFTELRNLTFLDLS--QCQLEQLSPT- 193 (306)
T ss_dssp ---------------------------TTCTTCCEEEC---TTCEEGGGEECSCCTTCTTCCEEECT--TSCCCEECTT-
T ss_pred ---------------------------ccCcCCCEEEC---CCCccccccchhHHhhCcCCCEEECC--CCCcCCcCHH-
Confidence 45678888887 3333433 334558899999999995 3322222233
Q ss_pred ccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhh
Q 044164 565 MAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGL 644 (714)
Q Consensus 565 ~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~ 644 (714)
.+..+++|+.++|+.|.+++.. +..+..++.++.+++.+ |++++..|.+
T Consensus 194 -------~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~L~~-------------------N~l~~~~~~~-- 242 (306)
T 2z66_A 194 -------AFNSLSSLQVLNMSHNNFFSLD---TFPYKCLNSLQVLDYSL-------------------NHIMTSKKQE-- 242 (306)
T ss_dssp -------TTTTCTTCCEEECTTSCCSBCC---SGGGTTCTTCCEEECTT-------------------SCCCBCSSSS--
T ss_pred -------HhcCCCCCCEEECCCCccCccC---hhhccCcccCCEeECCC-------------------CCCcccCHHH--
Confidence 6788999999999999988754 44456677777777777 8888888877
Q ss_pred HHHh-hhhhheeeccc
Q 044164 645 LSQC-RSLRKLFIHGT 659 (714)
Q Consensus 645 ~~~~-~~l~~l~~~~~ 659 (714)
++++ .+|++|++.|.
T Consensus 243 ~~~~~~~L~~L~L~~N 258 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQN 258 (306)
T ss_dssp CCCCCTTCCEEECTTC
T ss_pred HHhhhccCCEEEccCC
Confidence 7777 49999999943
No 73
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.18 E-value=2.7e-11 Score=114.40 Aligned_cols=105 Identities=14% Similarity=0.196 Sum_probs=87.2
Q ss_pred CcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcC----CcCcceeeeecCCCCCHHH
Q 044164 301 PLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVAL----WKGLESLSIKNSADLTDSA 376 (714)
Q Consensus 301 p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~----~~~L~~L~L~~c~~ltd~~ 376 (714)
.+|++|++++|. +++.+ +..+ ..|++|++|+|.+ |..++|.+ +..++. |++|++|+|++|.+|||.+
T Consensus 61 ~~L~~LDLs~~~-Itd~G--L~~L-~~~~~L~~L~L~~----C~~ItD~g-L~~L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIG--FDHM-EGLQYVEKIRLCK----CHYIEDGC-LERLSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCC-CCGGG--GGGG-TTCSCCCEEEEES----CTTCCHHH-HHHHHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCC-ccHHH--HHHh-cCCCCCCEEEeCC----CCccCHHH-HHHHHhcccccCCCCEEEcCCCCcCCHHH
Confidence 469999999996 87776 6666 7899999999999 67788875 666765 4689999999999999999
Q ss_pred HHHHHhcCCCccEEEEeCCCCCCHHHH--HHHHHHcCCCeeE
Q 044164 377 LIAISLGCSNLTKFEVQGCNKITKMGM--QIFARVLEKTLVD 416 (714)
Q Consensus 377 l~~l~~~~~~L~~L~L~~c~~lt~~~l--~~l~~~~~~~L~~ 416 (714)
+.+++. |++|++|+|++|+.||+.++ ..+-..+ |+++.
T Consensus 132 l~~L~~-~~~L~~L~L~~c~~Itd~gl~~~~L~~~l-P~l~V 171 (176)
T 3e4g_A 132 IIALHH-FRNLKYLFLSDLPGVKEKEKIVQAFKTSL-PSLEL 171 (176)
T ss_dssp HHHGGG-CTTCCEEEEESCTTCCCHHHHHHHHHHHC-TTCEE
T ss_pred HHHHhc-CCCCCEEECCCCCCCCchHHHHHHHHHHC-CCcEE
Confidence 999875 99999999999999999874 4444555 77653
No 74
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.17 E-value=4.8e-12 Score=133.17 Aligned_cols=217 Identities=12% Similarity=0.072 Sum_probs=120.4
Q ss_pred hcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHH
Q 044164 298 ESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSAL 377 (714)
Q Consensus 298 ~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l 377 (714)
..+++|+.|++++|. ++... . ...+++|++|+++++ .++ .+..+++|+.|++++|. ++...
T Consensus 55 ~~l~~L~~L~Ls~n~-l~~~~----~-~~~l~~L~~L~Ls~n-----~l~------~l~~~~~L~~L~l~~n~-l~~~~- 115 (317)
T 3o53_A 55 APFTKLELLNLSSNV-LYETL----D-LESLSTLRTLDLNNN-----YVQ------ELLVGPSIETLHAANNN-ISRVS- 115 (317)
T ss_dssp TTCTTCCEEECTTSC-CEEEE----E-ETTCTTCCEEECCSS-----EEE------EEEECTTCCEEECCSSC-CSEEE-
T ss_pred hCCCcCCEEECCCCc-CCcch----h-hhhcCCCCEEECcCC-----ccc------cccCCCCcCEEECCCCc-cCCcC-
Confidence 345556666665543 21111 0 245566666666551 221 22233566666666654 33211
Q ss_pred HHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccc
Q 044164 378 IAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYS 457 (714)
Q Consensus 378 ~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~ 457 (714)
...+++|+.|++++|. ++...-..+ ..+ ++|++|++++|... ......+...+++|++|+++.+.++.. +
T Consensus 116 ---~~~~~~L~~L~l~~N~-l~~~~~~~~-~~l-~~L~~L~Ls~N~l~--~~~~~~~~~~l~~L~~L~L~~N~l~~~--~ 185 (317)
T 3o53_A 116 ---CSRGQGKKNIYLANNK-ITMLRDLDE-GCR-SRVQYLDLKLNEID--TVNFAELAASSDTLEHLNLQYNFIYDV--K 185 (317)
T ss_dssp ---ECCCSSCEEEECCSSC-CCSGGGBCT-GGG-SSEEEEECTTSCCC--EEEGGGGGGGTTTCCEEECTTSCCCEE--E
T ss_pred ---ccccCCCCEEECCCCC-CCCccchhh-hcc-CCCCEEECCCCCCC--cccHHHHhhccCcCCEEECCCCcCccc--c
Confidence 1225667777776665 443211111 223 67777777776543 222233333457777777743332211 1
Q ss_pred hhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhccccccccccc
Q 044164 458 QDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLA 537 (714)
Q Consensus 458 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~ 537 (714)
.. ..+++|+.|++ .+..++.++..
T Consensus 186 ~~-----------------------------------------------------~~l~~L~~L~L---s~N~l~~l~~~ 209 (317)
T 3o53_A 186 GQ-----------------------------------------------------VVFAKLKTLDL---SSNKLAFMGPE 209 (317)
T ss_dssp CC-----------------------------------------------------CCCTTCCEEEC---CSSCCCEECGG
T ss_pred cc-----------------------------------------------------cccccCCEEEC---CCCcCCcchhh
Confidence 11 23567777777 44555666554
Q ss_pred CCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccc-cccccCCCCCccchhhHHhhhccc
Q 044164 538 GLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAI-GFALTAPRGYADLSLWERFYLNGI 614 (714)
Q Consensus 538 ~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~-~~~~~~p~~~~~l~~~~~~~l~~~ 614 (714)
+..+++|+.|.++ ++.-...|. .+..+++|+.++|+.|.+. +.. |..+..++.++.+++.+.
T Consensus 210 -~~~l~~L~~L~L~---~N~l~~l~~--------~~~~l~~L~~L~l~~N~~~~~~~---~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 210 -FQSAAGVTWISLR---NNKLVLIEK--------ALRFSQNLEHFDLRGNGFHCGTL---RDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp -GGGGTTCSEEECT---TSCCCEECT--------TCCCCTTCCEEECTTCCCBHHHH---HHHHHTCHHHHHHHHHHH
T ss_pred -hcccCcccEEECc---CCcccchhh--------HhhcCCCCCEEEccCCCccCcCH---HHHHhccccceEEECCCc
Confidence 7778889998885 333323344 5678889999999999888 433 666777888888888763
No 75
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.15 E-value=3.9e-12 Score=140.30 Aligned_cols=227 Identities=14% Similarity=0.128 Sum_probs=150.8
Q ss_pred CCCCccCCCcCHHHHHHHHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCC
Q 044164 279 EGYASEDARISPTALGDFFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALW 358 (714)
Q Consensus 279 ~~l~~~~~~it~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~ 358 (714)
..+....+.++.... ..+.++++|++|+++++. ++... ......+++|++|++.+ +.++... ...+..+
T Consensus 67 ~~L~L~~n~i~~~~~-~~~~~l~~L~~L~Ls~n~-i~~i~---~~~~~~l~~L~~L~L~~-----n~l~~~~-~~~~~~l 135 (440)
T 3zyj_A 67 RLLNLHENQIQIIKV-NSFKHLRHLEILQLSRNH-IRTIE---IGAFNGLANLNTLELFD-----NRLTTIP-NGAFVYL 135 (440)
T ss_dssp SEEECCSCCCCEECT-TTTSSCSSCCEEECCSSC-CCEEC---GGGGTTCSSCCEEECCS-----SCCSSCC-TTTSCSC
T ss_pred cEEEccCCcCCeeCH-HHhhCCCCCCEEECCCCc-CCccC---hhhccCCccCCEEECCC-----CcCCeeC-HhHhhcc
Confidence 333344444443222 224578999999999874 32221 12347889999999998 3344331 2357889
Q ss_pred cCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcC
Q 044164 359 KGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIR 438 (714)
Q Consensus 359 ~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~ 438 (714)
++|+.|+++++. ++...- .....+++|+.|++.+|..++...... ...+ ++|++|++++|... . ++. ...+
T Consensus 136 ~~L~~L~L~~N~-i~~~~~-~~~~~l~~L~~L~l~~~~~l~~i~~~~-~~~l-~~L~~L~L~~n~l~-~---~~~-~~~l 206 (440)
T 3zyj_A 136 SKLKELWLRNNP-IESIPS-YAFNRIPSLRRLDLGELKRLSYISEGA-FEGL-SNLRYLNLAMCNLR-E---IPN-LTPL 206 (440)
T ss_dssp SSCCEEECCSCC-CCEECT-TTTTTCTTCCEEECCCCTTCCEECTTT-TTTC-SSCCEEECTTSCCS-S---CCC-CTTC
T ss_pred ccCceeeCCCCc-ccccCH-HHhhhCcccCEeCCCCCCCcceeCcch-hhcc-cccCeecCCCCcCc-c---ccc-cCCC
Confidence 999999999875 442211 123458999999999987665422212 2334 89999999998644 1 122 2346
Q ss_pred CCCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccc
Q 044164 439 DRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKL 518 (714)
Q Consensus 439 ~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 518 (714)
++|+.|+++.+.++...+..+ ..+++|
T Consensus 207 ~~L~~L~Ls~N~l~~~~~~~~-----------------------------------------------------~~l~~L 233 (440)
T 3zyj_A 207 IKLDELDLSGNHLSAIRPGSF-----------------------------------------------------QGLMHL 233 (440)
T ss_dssp SSCCEEECTTSCCCEECTTTT-----------------------------------------------------TTCTTC
T ss_pred cccCEEECCCCccCccChhhh-----------------------------------------------------ccCccC
Confidence 899999995555555444444 457888
Q ss_pred cceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccc
Q 044164 519 KYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 519 ~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~ 591 (714)
+.|.+ .+..++.++...+.++++|+.|+++ +|.... .|. ..+..+++|+.++|+.|.+..
T Consensus 234 ~~L~L---~~n~l~~~~~~~~~~l~~L~~L~L~--~N~l~~-~~~-------~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 234 QKLWM---IQSQIQVIERNAFDNLQSLVEINLA--HNNLTL-LPH-------DLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CEEEC---TTCCCCEECTTSSTTCTTCCEEECT--TSCCCC-CCT-------TTTSSCTTCCEEECCSSCEEC
T ss_pred CEEEC---CCCceeEEChhhhcCCCCCCEEECC--CCCCCc-cCh-------hHhccccCCCEEEcCCCCccC
Confidence 88888 5566777777778999999999995 333332 222 256788999999999997654
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.14 E-value=2e-12 Score=144.49 Aligned_cols=238 Identities=13% Similarity=0.170 Sum_probs=165.9
Q ss_pred hccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHH
Q 044164 325 NSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQ 404 (714)
Q Consensus 325 ~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~ 404 (714)
...+++|++|++++ +.++... ...++.+++|+.|++++|. +++.. . ...+++|+.|++++|. +++.+
T Consensus 30 ~~~~~~L~~L~Ls~-----n~l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~Ls~N~-l~~l~-- 96 (487)
T 3oja_A 30 RQSAWNVKELDLSG-----NPLSQIS-AADLAPFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNNY-VQELL-- 96 (487)
T ss_dssp STTGGGCCEEECCS-----SCCCCCC-GGGGTTCTTCCEEECTTSC-CEEEE--E-CTTCTTCCEEECCSSE-EEEEE--
T ss_pred cccCCCccEEEeeC-----CcCCCCC-HHHHhCCCCCCEEEeeCCC-CCCCc--c-cccCCCCCEEEecCCc-CCCCC--
Confidence 34556899999998 3344432 3578899999999999986 44221 1 3458999999999997 55321
Q ss_pred HHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHh
Q 044164 405 IFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKR 484 (714)
Q Consensus 405 ~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 484 (714)
.. ++|++|++++|...... ...+++|+.|+++.+.+++..+..+
T Consensus 97 ----~~-~~L~~L~L~~N~l~~~~------~~~l~~L~~L~L~~N~l~~~~~~~~------------------------- 140 (487)
T 3oja_A 97 ----VG-PSIETLHAANNNISRVS------CSRGQGKKNIYLANNKITMLRDLDE------------------------- 140 (487)
T ss_dssp ----EC-TTCCEEECCSSCCCCEE------ECCCSSCEEEECCSSCCCSGGGBCG-------------------------
T ss_pred ----CC-CCcCEEECcCCcCCCCC------ccccCCCCEEECCCCCCCCCCchhh-------------------------
Confidence 22 89999999998755211 1246889999996555555444444
Q ss_pred hhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCC-CCCCcceEEEEEeccccCCCCcc
Q 044164 485 IMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLE-NCPILEEIQIKVVGDCRNQQKPV 563 (714)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~-~~~~L~~L~i~~~~~~~~~~~p~ 563 (714)
..+++|++|++ .+..++..+...+. ++++|+.|+++ +|.... .|
T Consensus 141 ----------------------------~~l~~L~~L~L---s~N~l~~~~~~~l~~~l~~L~~L~Ls--~N~l~~-~~- 185 (487)
T 3oja_A 141 ----------------------------GCRSRVQYLDL---KLNEIDTVNFAELAASSDTLEHLNLQ--YNFIYD-VK- 185 (487)
T ss_dssp ----------------------------GGGSSEEEEEC---TTSCCCEEEGGGGGGGTTTCCEEECT--TSCCCE-EE-
T ss_pred ----------------------------cCCCCCCEEEC---CCCCCCCcChHHHhhhCCcccEEecC--CCcccc-cc-
Confidence 55788999988 44555554444454 79999999995 332222 22
Q ss_pred cccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhh
Q 044164 564 FMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAG 643 (714)
Q Consensus 564 ~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~ 643 (714)
....+++|+.++|+.|.++|. |..+..++.++.+++.+ |.+++ +|..
T Consensus 186 --------~~~~l~~L~~L~Ls~N~l~~~----~~~~~~l~~L~~L~Ls~-------------------N~l~~-lp~~- 232 (487)
T 3oja_A 186 --------GQVVFAKLKTLDLSSNKLAFM----GPEFQSAAGVTWISLRN-------------------NKLVL-IEKA- 232 (487)
T ss_dssp --------CCCCCTTCCEEECCSSCCCEE----CGGGGGGTTCSEEECTT-------------------SCCCE-ECTT-
T ss_pred --------ccccCCCCCEEECCCCCCCCC----CHhHcCCCCccEEEecC-------------------CcCcc-cchh-
Confidence 345799999999999999884 44477888888888888 88885 8877
Q ss_pred hHHHhhhhhheeeccchhH--HHHHHHhcCCCccccccc
Q 044164 644 LLSQCRSLRKLFIHGTANE--HFMSFFLKIPTLRDVQLR 680 (714)
Q Consensus 644 ~~~~~~~l~~l~~~~~~~~--~~~~~~~~~~~l~~~~~~ 680 (714)
++.+++|+.|++.|.-=. .+..++..+++|+.+.++
T Consensus 233 -l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 233 -LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp -CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred -hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 788899999999853211 333344444777777774
No 77
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.14 E-value=1.1e-11 Score=141.95 Aligned_cols=180 Identities=16% Similarity=0.119 Sum_probs=102.0
Q ss_pred CcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHH
Q 044164 301 PLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAI 380 (714)
Q Consensus 301 p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l 380 (714)
++|+.|+++++. ++.- ...+++|++|+++++ .++..+ ..+++|+.|++.+|. ++. +
T Consensus 121 ~~L~~L~L~~N~-l~~l-------p~~l~~L~~L~Ls~N-----~l~~l~-----~~~~~L~~L~L~~N~-l~~--l--- 176 (622)
T 3g06_A 121 SGLCKLWIFGNQ-LTSL-------PVLPPGLQELSVSDN-----QLASLP-----ALPSELCKLWAYNNQ-LTS--L--- 176 (622)
T ss_dssp TTCCEEECCSSC-CSCC-------CCCCTTCCEEECCSS-----CCSCCC-----CCCTTCCEEECCSSC-CSC--C---
T ss_pred CCcCEEECCCCC-CCcC-------CCCCCCCCEEECcCC-----cCCCcC-----CccCCCCEEECCCCC-CCC--C---
Confidence 556666666553 2211 123466666666652 222210 133566677666654 332 1
Q ss_pred HhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhh
Q 044164 381 SLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDH 460 (714)
Q Consensus 381 ~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~ 460 (714)
...+++|+.|++++|. ++. ++ ... ++|+.|++++|... .- ....++|+.|+++.+.++...
T Consensus 177 ~~~~~~L~~L~Ls~N~-l~~--l~---~~~-~~L~~L~L~~N~l~-~l------~~~~~~L~~L~Ls~N~L~~lp----- 237 (622)
T 3g06_A 177 PMLPSGLQELSVSDNQ-LAS--LP---TLP-SELYKLWAYNNRLT-SL------PALPSGLKELIVSGNRLTSLP----- 237 (622)
T ss_dssp CCCCTTCCEEECCSSC-CSC--CC---CCC-TTCCEEECCSSCCS-SC------CCCCTTCCEEECCSSCCSCCC-----
T ss_pred cccCCCCcEEECCCCC-CCC--CC---Ccc-chhhEEECcCCccc-cc------CCCCCCCCEEEccCCccCcCC-----
Confidence 1345677777777765 432 11 122 67777777776533 11 123467778877433322110
Q ss_pred hhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCC
Q 044164 461 EIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLE 540 (714)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~ 540 (714)
..+++|+.|.+ .++.++.++.
T Consensus 238 ----------------------------------------------------~~l~~L~~L~L---s~N~L~~lp~---- 258 (622)
T 3g06_A 238 ----------------------------------------------------VLPSELKELMV---SGNRLTSLPM---- 258 (622)
T ss_dssp ----------------------------------------------------CCCTTCCEEEC---CSSCCSCCCC----
T ss_pred ----------------------------------------------------CCCCcCcEEEC---CCCCCCcCCc----
Confidence 12466777777 4455666654
Q ss_pred CCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccccc
Q 044164 541 NCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFA 593 (714)
Q Consensus 541 ~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~ 593 (714)
.+++|+.|.++ + |.-...|. .+.++++|+.++|+.|.++|..
T Consensus 259 ~~~~L~~L~Ls--~-N~L~~lp~--------~l~~l~~L~~L~L~~N~l~~~~ 300 (622)
T 3g06_A 259 LPSGLLSLSVY--R-NQLTRLPE--------SLIHLSSETTVNLEGNPLSERT 300 (622)
T ss_dssp CCTTCCEEECC--S-SCCCSCCG--------GGGGSCTTCEEECCSCCCCHHH
T ss_pred ccccCcEEeCC--C-CCCCcCCH--------HHhhccccCEEEecCCCCCCcC
Confidence 47889999985 3 33334455 6788899999999999988866
No 78
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.09 E-value=5.3e-12 Score=139.70 Aligned_cols=225 Identities=16% Similarity=0.113 Sum_probs=160.1
Q ss_pred CCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHH
Q 044164 329 PRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFAR 408 (714)
Q Consensus 329 ~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~ 408 (714)
++|++|+|.+ +.++... ...++.+++|+.|+++++. ++...... ..++++|++|+|++|. ++..... ...
T Consensus 75 ~~l~~L~L~~-----n~i~~~~-~~~~~~l~~L~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~-~~~ 144 (452)
T 3zyi_A 75 SNTRYLNLME-----NNIQMIQ-ADTFRHLHHLEVLQLGRNS-IRQIEVGA-FNGLASLNTLELFDNW-LTVIPSG-AFE 144 (452)
T ss_dssp TTCSEEECCS-----SCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSSC-CSBCCTT-TSS
T ss_pred CCccEEECcC-----CcCceEC-HHHcCCCCCCCEEECCCCc-cCCcChhh-ccCcccCCEEECCCCc-CCccChh-hhc
Confidence 6899999988 3444432 3467899999999999985 54322222 2458999999999987 5532211 122
Q ss_pred HcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEE-ecccccccccchhhhhhccCCCCccccCCccccchhHhhhc
Q 044164 409 VLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHV-DCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMM 487 (714)
Q Consensus 409 ~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l-~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (714)
.+ ++|++|++++|... . ........+++|++|++ +|..++......+
T Consensus 145 ~l-~~L~~L~L~~N~l~-~--~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~---------------------------- 192 (452)
T 3zyi_A 145 YL-SKLRELWLRNNPIE-S--IPSYAFNRVPSLMRLDLGELKKLEYISEGAF---------------------------- 192 (452)
T ss_dssp SC-TTCCEEECCSCCCC-E--ECTTTTTTCTTCCEEECCCCTTCCEECTTTT----------------------------
T ss_pred cc-CCCCEEECCCCCcc-e--eCHhHHhcCCcccEEeCCCCCCccccChhhc----------------------------
Confidence 34 89999999998743 1 11222345789999999 5676544433333
Q ss_pred ChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccc
Q 044164 488 SEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAE 567 (714)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~ 567 (714)
..+++|++|.+ .+..++.++ .+..+++|++|+++ +|......|.
T Consensus 193 -------------------------~~l~~L~~L~L---~~n~l~~~~--~~~~l~~L~~L~Ls--~N~l~~~~~~---- 236 (452)
T 3zyi_A 193 -------------------------EGLFNLKYLNL---GMCNIKDMP--NLTPLVGLEELEMS--GNHFPEIRPG---- 236 (452)
T ss_dssp -------------------------TTCTTCCEEEC---TTSCCSSCC--CCTTCTTCCEEECT--TSCCSEECGG----
T ss_pred -------------------------cCCCCCCEEEC---CCCcccccc--cccccccccEEECc--CCcCcccCcc----
Confidence 45788999988 455666665 47889999999995 4333332233
Q ss_pred cccccccCCccccccccccCccccccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHH
Q 044164 568 FGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQ 647 (714)
Q Consensus 568 ~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (714)
.+.++++|+.++|+.|.+.+.. |..+..++.++.++|.+ |+++.-.+.. +++
T Consensus 237 ----~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~-------------------N~l~~~~~~~--~~~ 288 (452)
T 3zyi_A 237 ----SFHGLSSLKKLWVMNSQVSLIE---RNAFDGLASLVELNLAH-------------------NNLSSLPHDL--FTP 288 (452)
T ss_dssp ----GGTTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECCS-------------------SCCSCCCTTS--STT
T ss_pred ----cccCccCCCEEEeCCCcCceEC---HHHhcCCCCCCEEECCC-------------------CcCCccChHH--hcc
Confidence 7889999999999999998876 77788888888888888 8887444443 678
Q ss_pred hhhhhheeeccc
Q 044164 648 CRSLRKLFIHGT 659 (714)
Q Consensus 648 ~~~l~~l~~~~~ 659 (714)
+.+|++|+++|.
T Consensus 289 l~~L~~L~L~~N 300 (452)
T 3zyi_A 289 LRYLVELHLHHN 300 (452)
T ss_dssp CTTCCEEECCSS
T ss_pred ccCCCEEEccCC
Confidence 999999999965
No 79
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.08 E-value=6.9e-10 Score=119.22 Aligned_cols=151 Identities=15% Similarity=0.116 Sum_probs=79.7
Q ss_pred CCCcEEEeeeecccccccccCHHHHHHHHhhCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHHHh-
Q 044164 220 PNLSQLLATCVFDHRFLGFVGDETLLSIASNCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDFFE- 298 (714)
Q Consensus 220 ~~L~~L~L~c~~~~~~~~~i~~~~l~~l~~~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l~~- 298 (714)
++|++|++..+ .+++.++..++..+++|++|++++| .+++.+...+..
T Consensus 101 ~~L~~L~Ls~n-------~l~~~~~~~l~~~L~~L~~L~Ls~n------------------------~l~~~~~~~L~~~ 149 (372)
T 3un9_A 101 HALDEVNLASC-------QLDPAGLRTLLPVFLRARKLGLQLN------------------------SLGPEACKDLRDL 149 (372)
T ss_dssp SCEEEEECTTC-------CCCHHHHHHTHHHHHTEEEEECCSS------------------------CCCHHHHHHHHHH
T ss_pred CCceEEEecCC-------CCCHHHHHHHHHHHHhccHhhcCCC------------------------CCCHHHHHHHHHH
Confidence 45556665222 3555555555555555666666543 234444433322
Q ss_pred ---cCCcccceecccccCcCCChH-HHHHHhccCCCccEEEeccccCccccCCCcch---HHHhcCCcCcceeeeecCCC
Q 044164 299 ---SLPLLEELVLDVGNNVRDTWP-ALELLNSKCPRLKSLKLGQVHGICREIDSSMP---AAGVALWKGLESLSIKNSAD 371 (714)
Q Consensus 299 ---~~p~L~~L~L~~c~~l~~~~~-~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~---l~~l~~~~~L~~L~L~~c~~ 371 (714)
.+++|++|++++|. +++.+. .+...+..+++|++|+|++ +.+++.+. ...+..+++|+.|+|++|.
T Consensus 150 L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~-----N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~- 222 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLH-----TGLGDEGLELLAAQLDRNRQLQELNVAYNG- 222 (372)
T ss_dssp HHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTT-----SSCHHHHHHHHHHHGGGCSCCCEEECCSSC-
T ss_pred HHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCC-----CCCCcHHHHHHHHHHhcCCCcCeEECCCCC-
Confidence 24556666666652 322211 1222234555666666655 22333220 1234556677777777765
Q ss_pred CCHHHHHHHHh---cCCCccEEEEeCCCCCCHHHHHHHHHH
Q 044164 372 LTDSALIAISL---GCSNLTKFEVQGCNKITKMGMQIFARV 409 (714)
Q Consensus 372 ltd~~l~~l~~---~~~~L~~L~L~~c~~lt~~~l~~l~~~ 409 (714)
|++.+...++. .+++|++|+|++|. |++.|+..+...
T Consensus 223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~ 262 (372)
T 3un9_A 223 AGDTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDL 262 (372)
T ss_dssp CCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHH
Confidence 67766655543 35777777777776 777777766653
No 80
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.05 E-value=4.9e-11 Score=122.51 Aligned_cols=208 Identities=12% Similarity=0.093 Sum_probs=142.4
Q ss_pred cCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHH
Q 044164 299 SLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALI 378 (714)
Q Consensus 299 ~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~ 378 (714)
.+++|+.|++.++. ++.. .. ...+++|++|++.++ .+++. ..+..+++|++|++++|. ++... .
T Consensus 39 ~l~~L~~L~l~~~~-i~~~----~~-l~~l~~L~~L~l~~n-----~l~~~---~~l~~l~~L~~L~L~~n~-l~~~~-~ 102 (272)
T 3rfs_A 39 ELNSIDQIIANNSD-IKSV----QG-IQYLPNVRYLALGGN-----KLHDI---SALKELTNLTYLILTGNQ-LQSLP-N 102 (272)
T ss_dssp HHTTCCEEECTTSC-CCCC----TT-GGGCTTCCEEECTTS-----CCCCC---GGGTTCTTCCEEECTTSC-CCCCC-T
T ss_pred cccceeeeeeCCCC-cccc----cc-cccCCCCcEEECCCC-----CCCCc---hhhcCCCCCCEEECCCCc-cCccC-h
Confidence 35789999998874 3332 12 367899999999883 34432 367889999999999885 44221 1
Q ss_pred HHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccch
Q 044164 379 AISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQ 458 (714)
Q Consensus 379 ~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~ 458 (714)
.....+++|++|++++|. ++.... .....+ ++|++|++++|... . ........+++|+.|+++.+.++...+..
T Consensus 103 ~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l-~~L~~L~L~~n~l~--~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 176 (272)
T 3rfs_A 103 GVFDKLTNLKELVLVENQ-LQSLPD-GVFDKL-TNLTYLNLAHNQLQ--S-LPKGVFDKLTNLTELDLSYNQLQSLPEGV 176 (272)
T ss_dssp TTTTTCTTCCEEECTTSC-CCCCCT-TTTTTC-TTCCEEECCSSCCC--C-CCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred hHhcCCcCCCEEECCCCc-CCccCH-HHhccC-CCCCEEECCCCccC--c-cCHHHhccCccCCEEECCCCCcCccCHHH
Confidence 223458999999999987 553221 112344 89999999998643 1 11222345789999999544444333333
Q ss_pred hhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccC
Q 044164 459 DHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAG 538 (714)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~ 538 (714)
+ ..+++|+.|.+ .+..++.++...
T Consensus 177 ~-----------------------------------------------------~~l~~L~~L~L---~~N~l~~~~~~~ 200 (272)
T 3rfs_A 177 F-----------------------------------------------------DKLTQLKDLRL---YQNQLKSVPDGV 200 (272)
T ss_dssp T-----------------------------------------------------TTCTTCCEEEC---CSSCCSCCCTTT
T ss_pred h-----------------------------------------------------cCCccCCEEEC---CCCcCCccCHHH
Confidence 3 45788999988 455667777776
Q ss_pred CCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccch
Q 044164 539 LENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLS 604 (714)
Q Consensus 539 l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~ 604 (714)
+.++++|+.|.+. +|- ....||.|+.+++..|.++|.+ |...+.++
T Consensus 201 ~~~l~~L~~L~l~--~N~---------------~~~~~~~l~~l~~~~n~~~g~i---p~~~~~~~ 246 (272)
T 3rfs_A 201 FDRLTSLQYIWLH--DNP---------------WDCTCPGIRYLSEWINKHSGVV---RNSAGSVA 246 (272)
T ss_dssp TTTCTTCCEEECC--SSC---------------BCCCTTTTHHHHHHHHHTGGGB---BCTTSCBC
T ss_pred HhCCcCCCEEEcc--CCC---------------ccccCcHHHHHHHHHHhCCCcc---cCcccccC
Confidence 8899999999995 321 1245888999999999999988 87766654
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.03 E-value=2.3e-10 Score=119.81 Aligned_cols=225 Identities=15% Similarity=0.115 Sum_probs=133.8
Q ss_pred cCHHHHHHHHh--cCCcccceecccccCcCCChHHHHHHh-ccCCCccEEEeccccCccccCCCcc---hHHHhcCCcCc
Q 044164 288 ISPTALGDFFE--SLPLLEELVLDVGNNVRDTWPALELLN-SKCPRLKSLKLGQVHGICREIDSSM---PAAGVALWKGL 361 (714)
Q Consensus 288 it~~~l~~l~~--~~p~L~~L~L~~c~~l~~~~~~l~~l~-~~~~~L~~L~L~~~~~~c~~i~~~~---~l~~l~~~~~L 361 (714)
+++..+..+.. .+++|++|++++|. ++... ...+. ..+++|++|+++++ .++... +...+..+++|
T Consensus 76 ~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~--~~~~~~~~~~~L~~L~Ls~n-----~i~~~~~~~~~~~~~~~~~L 147 (310)
T 4glp_A 76 VPAQLLVGALRVLAYSRLKELTLEDLK-ITGTM--PPLPLEATGLALSSLRLRNV-----SWATGRSWLAELQQWLKPGL 147 (310)
T ss_dssp CBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCC--CCCSSSCCCBCCSSCEEESC-----CCSSTTSSHHHHHTTBCSCC
T ss_pred CCHHHHHHHHHhcccCceeEEEeeCCE-eccch--hhhhhhccCCCCCEEEeecc-----cccchhhhhHHHHhhhccCC
Confidence 45555554432 35779999999875 32221 11111 56889999999883 333311 01244578999
Q ss_pred ceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHH--HHcCCCeeEEEeeCCCCCCchhHHHHHHhcCC
Q 044164 362 ESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFA--RVLEKTLVDVRISSCKYLNTVCSLQALEPIRD 439 (714)
Q Consensus 362 ~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~--~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~ 439 (714)
++|++++|. ++.... .....+++|++|++++|...+..++.... ..+ ++|++|++++|....-......+...++
T Consensus 148 ~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 148 KVLSIAQAH-SPAFSC-EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKF-PAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp CEEEEECCS-SCCCCT-TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSS-CCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred CEEEeeCCC-cchhhH-HHhccCCCCCEEECCCCCCccchhhhHHHhhhcC-CCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 999999886 432211 12235789999999999844434432211 344 8899999999875311222233445678
Q ss_pred CCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCcccccccccc
Q 044164 440 RIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLK 519 (714)
Q Consensus 440 ~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 519 (714)
+|++|+++.+.++...++.+. . -..+++|+
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~--------------------------------------~------------~~~~~~L~ 254 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAP--------------------------------------R------------CMWSSALN 254 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCS--------------------------------------S------------CCCCTTCC
T ss_pred CCCEEECCCCCCCccchhhHH--------------------------------------h------------ccCcCcCC
Confidence 999999965555444343330 0 01136788
Q ss_pred ceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccc
Q 044164 520 YLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 520 ~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~ 591 (714)
+|.+ .+..++.++.. + .++|+.|+++ .|.... .| .+..+++|+.++|+.|.++.
T Consensus 255 ~L~L---s~N~l~~lp~~-~--~~~L~~L~Ls--~N~l~~-~~---------~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 255 SLNL---SFAGLEQVPKG-L--PAKLRVLDLS--SNRLNR-AP---------QPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CEEC---CSSCCCSCCSC-C--CSCCSCEECC--SCCCCS-CC---------CTTSCCCCSCEECSSTTTSC
T ss_pred EEEC---CCCCCCchhhh-h--cCCCCEEECC--CCcCCC-Cc---------hhhhCCCccEEECcCCCCCC
Confidence 8877 44556666543 4 3788888885 333222 11 23566888888888887553
No 82
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.02 E-value=1.5e-10 Score=121.43 Aligned_cols=209 Identities=18% Similarity=0.133 Sum_probs=130.3
Q ss_pred cCCcccceecccccCcCCChHHHHHH-hccCCCccEEEeccccCccccCCCcchHHHhcC-----CcCcceeeeecCCCC
Q 044164 299 SLPLLEELVLDVGNNVRDTWPALELL-NSKCPRLKSLKLGQVHGICREIDSSMPAAGVAL-----WKGLESLSIKNSADL 372 (714)
Q Consensus 299 ~~p~L~~L~L~~c~~l~~~~~~l~~l-~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~-----~~~L~~L~L~~c~~l 372 (714)
.+++|++|++++|. ++... ...+ ...+++|++|++++ +.++..+ ..++. +++|++|+++++. +
T Consensus 93 ~l~~L~~L~L~~n~-l~~~~--~~~~~~~~l~~L~~L~Ls~-----N~l~~~~--~~~~~l~~~~~~~L~~L~L~~N~-l 161 (312)
T 1wwl_A 93 GISGLQELTLENLE-VTGTA--PPPLLEATGPDLNILNLRN-----VSWATRD--AWLAELQQWLKPGLKVLSIAQAH-S 161 (312)
T ss_dssp TTSCCCEEEEEEEB-CBSCC--CCCSSSCCSCCCSEEEEES-----CBCSSSS--SHHHHHHTTCCTTCCEEEEESCS-C
T ss_pred CcCCccEEEccCCc-ccchh--HHHHHHhcCCCccEEEccC-----CCCcchh--HHHHHHHHhhcCCCcEEEeeCCC-C
Confidence 57899999999874 33221 1111 26789999999988 3333321 22332 3899999999885 4
Q ss_pred CHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHH--HHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEeccc
Q 044164 373 TDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFA--RVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVW 450 (714)
Q Consensus 373 td~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~--~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~ 450 (714)
+......+ ..+++|++|++++|...+..++..-. ..+ ++|++|++++|....-......+...+++|++|+++.+.
T Consensus 162 ~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 162 LNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNS 239 (312)
T ss_dssp CCCCTTTC-CCCSSCCEEECCSCTTCHHHHHHHHSCTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSC
T ss_pred ccchHHHh-ccCCCCCEEECCCCCcCcchHHHHHHHhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCc
Confidence 33221222 35899999999999843333332222 445 899999999987542123334455567899999995444
Q ss_pred cccccc-chhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhccc
Q 044164 451 ESVEQY-SQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGE 529 (714)
Q Consensus 451 ~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 529 (714)
++...+ ... ..+++|++|.+ .+.
T Consensus 240 l~~~~~~~~~-----------------------------------------------------~~l~~L~~L~L---s~N 263 (312)
T 1wwl_A 240 LRDAAGAPSC-----------------------------------------------------DWPSQLNSLNL---SFT 263 (312)
T ss_dssp CCSSCCCSCC-----------------------------------------------------CCCTTCCEEEC---TTS
T ss_pred CCcccchhhh-----------------------------------------------------hhcCCCCEEEC---CCC
Confidence 433321 111 23567888887 445
Q ss_pred ccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccc
Q 044164 530 LLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 530 ~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~ 591 (714)
.++.++.. +. ++|+.|+++ +|.... .| .+..+++|+.++|+.|.++|
T Consensus 264 ~l~~ip~~-~~--~~L~~L~Ls--~N~l~~-~p---------~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 264 GLKQVPKG-LP--AKLSVLDLS--YNRLDR-NP---------SPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSSCCSS-CC--SEEEEEECC--SSCCCS-CC---------CTTTSCEEEEEECTTCTTTC
T ss_pred ccChhhhh-cc--CCceEEECC--CCCCCC-Ch---------hHhhCCCCCEEeccCCCCCC
Confidence 56666543 44 788888885 332222 11 35678888888888887765
No 83
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.00 E-value=1.3e-10 Score=132.90 Aligned_cols=113 Identities=18% Similarity=0.157 Sum_probs=75.1
Q ss_pred CCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHH
Q 044164 300 LPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIA 379 (714)
Q Consensus 300 ~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~ 379 (714)
+++|++|++++|. ++.- ...+++|++|++++ +.++... . .+++|+.|++++|. ++.
T Consensus 80 l~~L~~L~Ls~N~-l~~l-------p~~l~~L~~L~Ls~-----N~l~~l~---~--~l~~L~~L~L~~N~-l~~----- 135 (622)
T 3g06_A 80 PPELRTLEVSGNQ-LTSL-------PVLPPGLLELSIFS-----NPLTHLP---A--LPSGLCKLWIFGNQ-LTS----- 135 (622)
T ss_dssp CTTCCEEEECSCC-CSCC-------CCCCTTCCEEEECS-----CCCCCCC---C--CCTTCCEEECCSSC-CSC-----
T ss_pred CCCCCEEEcCCCc-CCcC-------CCCCCCCCEEECcC-----CcCCCCC---C--CCCCcCEEECCCCC-CCc-----
Confidence 5789999999875 4321 23678999999987 3333321 1 56889999998875 432
Q ss_pred HHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEeccc
Q 044164 380 ISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVW 450 (714)
Q Consensus 380 l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~ 450 (714)
+...+++|++|++++|. ++. ++ ... ++|+.|++++|... . ++ ..+++|+.|+++.+.
T Consensus 136 lp~~l~~L~~L~Ls~N~-l~~--l~---~~~-~~L~~L~L~~N~l~-~---l~---~~~~~L~~L~Ls~N~ 192 (622)
T 3g06_A 136 LPVLPPGLQELSVSDNQ-LAS--LP---ALP-SELCKLWAYNNQLT-S---LP---MLPSGLQELSVSDNQ 192 (622)
T ss_dssp CCCCCTTCCEEECCSSC-CSC--CC---CCC-TTCCEEECCSSCCS-C---CC---CCCTTCCEEECCSSC
T ss_pred CCCCCCCCCEEECcCCc-CCC--cC---Ccc-CCCCEEECCCCCCC-C---Cc---ccCCCCcEEECCCCC
Confidence 22346889999998886 543 11 123 78999999887644 1 11 456889999885444
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.00 E-value=3.2e-10 Score=118.70 Aligned_cols=181 Identities=15% Similarity=0.113 Sum_probs=112.5
Q ss_pred cCCcccceecccccCcCCChHHHH-HHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHH
Q 044164 299 SLPLLEELVLDVGNNVRDTWPALE-LLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSAL 377 (714)
Q Consensus 299 ~~p~L~~L~L~~c~~l~~~~~~l~-~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l 377 (714)
.+++|++|+++++. ++.....+. .....+++|++|+++++ .++... ...++.+++|++|+++++.-.++.++
T Consensus 115 ~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n-----~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~ 187 (310)
T 4glp_A 115 TGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQA-----HSPAFS-CEQVRAFPALTSLDLSDNPGLGERGL 187 (310)
T ss_dssp CCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECC-----SSCCCC-TTSCCCCTTCCEEECCSCTTCHHHHH
T ss_pred cCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCC-----Ccchhh-HHHhccCCCCCEEECCCCCCccchhh
Confidence 46778888888764 332211111 12246888999999873 333321 24567889999999998874333333
Q ss_pred HHH--HhcCCCccEEEEeCCCCCCH--HHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhc--CCCCCEEEEecccc
Q 044164 378 IAI--SLGCSNLTKFEVQGCNKITK--MGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPI--RDRIQRLHVDCVWE 451 (714)
Q Consensus 378 ~~l--~~~~~~L~~L~L~~c~~lt~--~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~--~~~L~~L~l~C~~~ 451 (714)
... ...+++|++|++++|. ++. .....+...+ ++|++|++++|..... ....+... .++|++|+++.+.+
T Consensus 188 ~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l-~~L~~L~Ls~N~l~~~--~p~~~~~~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 188 MAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAG-VQPHSLDLSHNSLRAT--VNPSAPRCMWSSALNSLNLSFAGL 263 (310)
T ss_dssp HTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHT-CCCSSEECTTSCCCCC--CCSCCSSCCCCTTCCCEECCSSCC
T ss_pred hHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcC-CCCCEEECCCCCCCcc--chhhHHhccCcCcCCEEECCCCCC
Confidence 221 2457899999999987 663 2223344566 8999999999875421 11112221 27899999965554
Q ss_pred cccccchhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhccccc
Q 044164 452 SVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELL 531 (714)
Q Consensus 452 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l 531 (714)
+ ..+..+ .++|+.|++ ....+
T Consensus 264 ~-~lp~~~-------------------------------------------------------~~~L~~L~L---s~N~l 284 (310)
T 4glp_A 264 E-QVPKGL-------------------------------------------------------PAKLRVLDL---SSNRL 284 (310)
T ss_dssp C-SCCSCC-------------------------------------------------------CSCCSCEEC---CSCCC
T ss_pred C-chhhhh-------------------------------------------------------cCCCCEEEC---CCCcC
Confidence 3 222222 267888888 45556
Q ss_pred ccccccCCCCCCCcceEEEE
Q 044164 532 NPIRLAGLENCPILEEIQIK 551 (714)
Q Consensus 532 ~~l~~~~l~~~~~L~~L~i~ 551 (714)
+.++. +..+++|+.|+++
T Consensus 285 ~~~~~--~~~l~~L~~L~L~ 302 (310)
T 4glp_A 285 NRAPQ--PDELPEVDNLTLD 302 (310)
T ss_dssp CSCCC--TTSCCCCSCEECS
T ss_pred CCCch--hhhCCCccEEECc
Confidence 66543 5678999999986
No 85
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.95 E-value=4.6e-09 Score=112.72 Aligned_cols=197 Identities=13% Similarity=0.094 Sum_probs=126.6
Q ss_pred CCCCceEEecCccccCCChHHHHHh-chhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEeeeecccccccc
Q 044164 160 CPSLSSIDLSHFYCWTEDLPTAFEL-YPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLATCVFDHRFLGF 238 (714)
Q Consensus 160 ~~~L~~L~Ls~~~~~~~~~~~~l~~-l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L~c~~~~~~~~~ 238 (714)
.++|++|+|+++...... ...+.. +...+++|++|+|++| .+++.++..+...+++|++|+++.+ .
T Consensus 71 ~~~L~~L~Ls~n~l~~~~-~~~l~~~L~~~~~~L~~L~Ls~n-----~l~~~~~~~l~~~L~~L~~L~Ls~n-------~ 137 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVK-CTVVAAVLGSGRHALDEVNLASC-----QLDPAGLRTLLPVFLRARKLGLQLN-------S 137 (372)
T ss_dssp HTTCCEEECTTSCCCHHH-HHHHHHHHSSCSSCEEEEECTTC-----CCCHHHHHHTHHHHHTEEEEECCSS-------C
T ss_pred HhhCCEEEecCCCCCHHH-HHHHHHHHhhCCCCceEEEecCC-----CCCHHHHHHHHHHHHhccHhhcCCC-------C
Confidence 467888888888743222 222222 2212358999999873 2677788887777888999999433 4
Q ss_pred cCHHHHHHHHh----hCCCCceEEeccccCcCCCCCCCCCCCCCCCCCccCCCcCHHHHHHH---HhcCCcccceecccc
Q 044164 239 VGDETLLSIAS----NCPRLSLLHLADSTALSSNSSRADPNNNDEGYASEDARISPTALGDF---FESLPLLEELVLDVG 311 (714)
Q Consensus 239 i~~~~l~~l~~----~~~~L~~L~L~~c~~l~~~~~~~~~~~~l~~l~~~~~~it~~~l~~l---~~~~p~L~~L~L~~c 311 (714)
+++.+...++. .+++|++|++++| .+++.+...+ +..+++|++|++++|
T Consensus 138 l~~~~~~~L~~~L~~~~~~L~~L~Ls~n------------------------~l~~~~~~~l~~~L~~~~~L~~L~Ls~N 193 (372)
T 3un9_A 138 LGPEACKDLRDLLLHDQCQITTLRLSNN------------------------PLTAAGVAVLMEGLAGNTSVTHLSLLHT 193 (372)
T ss_dssp CCHHHHHHHHHHHHSTTCCCCEEECCSS------------------------CCHHHHHHHHHHHHHTCSSCCEEECTTS
T ss_pred CCHHHHHHHHHHHHhcCCccceeeCCCC------------------------CCChHHHHHHHHHHhcCCCcCEEeCCCC
Confidence 77777666653 4578999999875 2455554444 356888999999987
Q ss_pred cCcCCChH-HHHHHhccCCCccEEEeccccCccccCCCcch---HHHhcCCcCcceeeeecCCCCCHHHHHHHHhcC-CC
Q 044164 312 NNVRDTWP-ALELLNSKCPRLKSLKLGQVHGICREIDSSMP---AAGVALWKGLESLSIKNSADLTDSALIAISLGC-SN 386 (714)
Q Consensus 312 ~~l~~~~~-~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~---l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~-~~ 386 (714)
. +++.+. .+...+..+++|++|+|++ +.+++.+. ...+..+++|+.|+|++|. |++.+...+.... +.
T Consensus 194 ~-l~~~g~~~L~~~L~~~~~L~~L~Ls~-----N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~~~~~ 266 (372)
T 3un9_A 194 G-LGDEGLELLAAQLDRNRQLQELNVAY-----NGAGDTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDLGGAA 266 (372)
T ss_dssp S-CHHHHHHHHHHHGGGCSCCCEEECCS-----SCCCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHCC---
T ss_pred C-CCcHHHHHHHHHHhcCCCcCeEECCC-----CCCCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHHhcCC
Confidence 4 544331 1334456778999999988 34555431 1234578999999999987 9999998887632 12
Q ss_pred ---ccEEE--EeCCCCCCHH
Q 044164 387 ---LTKFE--VQGCNKITKM 401 (714)
Q Consensus 387 ---L~~L~--L~~c~~lt~~ 401 (714)
|+.+. +.++. +++.
T Consensus 267 ~~~L~~l~~ll~~~~-~~~~ 285 (372)
T 3un9_A 267 EGGARVVVSLTEGTA-VSEY 285 (372)
T ss_dssp ---CEEECCCC-----CHHH
T ss_pred CccchhhHhhhcCCc-cCHH
Confidence 56665 54444 4433
No 86
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.92 E-value=3.4e-10 Score=118.69 Aligned_cols=204 Identities=18% Similarity=0.138 Sum_probs=130.5
Q ss_pred cCCCccEEEeccccCccccCCCcchHHH-hcCCcCcceeeeecCCCCCHH--HHHHHHhc-CCCccEEEEeCCCCCCHHH
Q 044164 327 KCPRLKSLKLGQVHGICREIDSSMPAAG-VALWKGLESLSIKNSADLTDS--ALIAISLG-CSNLTKFEVQGCNKITKMG 402 (714)
Q Consensus 327 ~~~~L~~L~L~~~~~~c~~i~~~~~l~~-l~~~~~L~~L~L~~c~~ltd~--~l~~l~~~-~~~L~~L~L~~c~~lt~~~ 402 (714)
.+++|++|+++++ .+++..+... ++.+++|++|+++++. ++.. .+..+... +++|++|++++|. ++...
T Consensus 93 ~l~~L~~L~L~~n-----~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~ 165 (312)
T 1wwl_A 93 GISGLQELTLENL-----EVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFS 165 (312)
T ss_dssp TTSCCCEEEEEEE-----BCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCC
T ss_pred CcCCccEEEccCC-----cccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-Cccch
Confidence 6899999999983 3333211112 2788999999999985 4433 22232221 3899999999997 54432
Q ss_pred HHHHHHHcCCCeeEEEeeCCCCCCchhHH-HHHH-hcCCCCCEEEEeccccccc--ccchhhhhhccCCCCccccCCccc
Q 044164 403 MQIFARVLEKTLVDVRISSCKYLNTVCSL-QALE-PIRDRIQRLHVDCVWESVE--QYSQDHEIRGESSSSSHEACGFKD 478 (714)
Q Consensus 403 l~~l~~~~~~~L~~L~L~~C~~l~~~~~l-~~l~-~~~~~L~~L~l~C~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~ 478 (714)
...+ ..+ ++|++|++++|... +...+ ..+. ..+++|++|+++-+.++.. .+..+
T Consensus 166 ~~~~-~~l-~~L~~L~Ls~N~l~-~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~------------------- 223 (312)
T 1wwl_A 166 CEQV-RVF-PALSTLDLSDNPEL-GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSAL------------------- 223 (312)
T ss_dssp TTTC-CCC-SSCCEEECCSCTTC-HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHH-------------------
T ss_pred HHHh-ccC-CCCCEEECCCCCcC-cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHH-------------------
Confidence 2222 234 89999999999865 22222 2221 5679999999943333211 01111
Q ss_pred cchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhccccccccc-ccCCCCCCCcceEEEEEecccc
Q 044164 479 FQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIR-LAGLENCPILEEIQIKVVGDCR 557 (714)
Q Consensus 479 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~-~~~l~~~~~L~~L~i~~~~~~~ 557 (714)
...+++|++|++ .+..++..+ ...+..+++|+.|.++ + +.
T Consensus 224 ---------------------------------~~~l~~L~~L~L---s~N~l~~~~~~~~~~~l~~L~~L~Ls--~-N~ 264 (312)
T 1wwl_A 224 ---------------------------------AAARVQLQGLDL---SHNSLRDAAGAPSCDWPSQLNSLNLS--F-TG 264 (312)
T ss_dssp ---------------------------------HHTTCCCSEEEC---TTSCCCSSCCCSCCCCCTTCCEEECT--T-SC
T ss_pred ---------------------------------HhcCCCCCEEEC---CCCcCCcccchhhhhhcCCCCEEECC--C-Cc
Confidence 024578999888 444455433 3445678999999995 3 33
Q ss_pred CCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhcc
Q 044164 558 NQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 558 ~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~ 613 (714)
-...|. .+. ++|+.++|+.|.+++. |. +..++.++.+++.+
T Consensus 265 l~~ip~--------~~~--~~L~~L~Ls~N~l~~~----p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 265 LKQVPK--------GLP--AKLSVLDLSYNRLDRN----PS-PDELPQVGNLSLKG 305 (312)
T ss_dssp CSSCCS--------SCC--SEEEEEECCSSCCCSC----CC-TTTSCEEEEEECTT
T ss_pred cChhhh--------hcc--CCceEEECCCCCCCCC----hh-HhhCCCCCEEeccC
Confidence 334444 333 8999999999998875 55 67788888888877
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.89 E-value=2.8e-09 Score=111.48 Aligned_cols=192 Identities=16% Similarity=0.110 Sum_probs=116.9
Q ss_pred CCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHH
Q 044164 300 LPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIA 379 (714)
Q Consensus 300 ~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~ 379 (714)
+++|++|++++|. ++.- .. ...+++|++|++++ +.+++.. .+..+++|+.|++++|. +++. ..
T Consensus 40 l~~L~~L~l~~~~-i~~l----~~-~~~l~~L~~L~L~~-----n~i~~~~---~~~~l~~L~~L~L~~n~-l~~~--~~ 102 (308)
T 1h6u_A 40 LDGITTLSAFGTG-VTTI----EG-VQYLNNLIGLELKD-----NQITDLA---PLKNLTKITELELSGNP-LKNV--SA 102 (308)
T ss_dssp HHTCCEEECTTSC-CCCC----TT-GGGCTTCCEEECCS-----SCCCCCG---GGTTCCSCCEEECCSCC-CSCC--GG
T ss_pred cCCcCEEEeeCCC-ccCc----hh-hhccCCCCEEEccC-----CcCCCCh---hHccCCCCCEEEccCCc-CCCc--hh
Confidence 4678888888774 3222 11 36678888888877 3344432 27778888888888875 4432 22
Q ss_pred HHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchh
Q 044164 380 ISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQD 459 (714)
Q Consensus 380 l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l 459 (714)
...+++|+.|++++|. +++. .. ...+ ++|++|++++|... ... . ...+++|+.|+++.+.++...+ +
T Consensus 103 -~~~l~~L~~L~l~~n~-l~~~--~~-l~~l-~~L~~L~l~~n~l~-~~~---~-l~~l~~L~~L~l~~n~l~~~~~--l 169 (308)
T 1h6u_A 103 -IAGLQSIKTLDLTSTQ-ITDV--TP-LAGL-SNLQVLYLDLNQIT-NIS---P-LAGLTNLQYLSIGNAQVSDLTP--L 169 (308)
T ss_dssp -GTTCTTCCEEECTTSC-CCCC--GG-GTTC-TTCCEEECCSSCCC-CCG---G-GGGCTTCCEEECCSSCCCCCGG--G
T ss_pred -hcCCCCCCEEECCCCC-CCCc--hh-hcCC-CCCCEEECCCCccC-cCc---c-ccCCCCccEEEccCCcCCCChh--h
Confidence 2347888888888887 5542 22 2344 78888888887643 111 1 3356788888884333222111 2
Q ss_pred hhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCC
Q 044164 460 HEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGL 539 (714)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l 539 (714)
..+++|+.|.+ .+..++.++. +
T Consensus 170 -----------------------------------------------------~~l~~L~~L~l---~~n~l~~~~~--l 191 (308)
T 1h6u_A 170 -----------------------------------------------------ANLSKLTTLKA---DDNKISDISP--L 191 (308)
T ss_dssp -----------------------------------------------------TTCTTCCEEEC---CSSCCCCCGG--G
T ss_pred -----------------------------------------------------cCCCCCCEEEC---CCCccCcChh--h
Confidence 34567777776 3444555543 5
Q ss_pred CCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccc
Q 044164 540 ENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 540 ~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~ 591 (714)
..+++|+.|.++ ++.-...+ .+..+++|+.++|+.|.+++
T Consensus 192 ~~l~~L~~L~L~---~N~l~~~~---------~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 192 ASLPNLIEVHLK---NNQISDVS---------PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp GGCTTCCEEECT---TSCCCBCG---------GGTTCTTCCEEEEEEEEEEC
T ss_pred cCCCCCCEEEcc---CCccCccc---------cccCCCCCCEEEccCCeeec
Confidence 667888888874 22222111 35777888888888887766
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.89 E-value=1.3e-09 Score=113.90 Aligned_cols=188 Identities=18% Similarity=0.211 Sum_probs=133.0
Q ss_pred cCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHH
Q 044164 327 KCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIF 406 (714)
Q Consensus 327 ~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l 406 (714)
.+++|++|++.++ .++.. ..+..+++|+.|++++|. +++.. . ...+++|+.|++++|. +++. ..+
T Consensus 39 ~l~~L~~L~l~~~-----~i~~l---~~~~~l~~L~~L~L~~n~-i~~~~--~-~~~l~~L~~L~L~~n~-l~~~--~~~ 103 (308)
T 1h6u_A 39 DLDGITTLSAFGT-----GVTTI---EGVQYLNNLIGLELKDNQ-ITDLA--P-LKNLTKITELELSGNP-LKNV--SAI 103 (308)
T ss_dssp HHHTCCEEECTTS-----CCCCC---TTGGGCTTCCEEECCSSC-CCCCG--G-GTTCCSCCEEECCSCC-CSCC--GGG
T ss_pred HcCCcCEEEeeCC-----CccCc---hhhhccCCCCEEEccCCc-CCCCh--h-HccCCCCCEEEccCCc-CCCc--hhh
Confidence 4678999999883 33332 357789999999999985 55432 2 4568999999999998 6553 232
Q ss_pred HHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhhh
Q 044164 407 ARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIM 486 (714)
Q Consensus 407 ~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (714)
..+ ++|++|++++|... .. +. ...+++|++|+++.+.++...+ +
T Consensus 104 -~~l-~~L~~L~l~~n~l~-~~---~~-l~~l~~L~~L~l~~n~l~~~~~--l--------------------------- 147 (308)
T 1h6u_A 104 -AGL-QSIKTLDLTSTQIT-DV---TP-LAGLSNLQVLYLDLNQITNISP--L--------------------------- 147 (308)
T ss_dssp -TTC-TTCCEEECTTSCCC-CC---GG-GTTCTTCCEEECCSSCCCCCGG--G---------------------------
T ss_pred -cCC-CCCCEEECCCCCCC-Cc---hh-hcCCCCCCEEECCCCccCcCcc--c---------------------------
Confidence 344 89999999999754 21 22 3457999999995444322211 3
Q ss_pred cChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCccccc
Q 044164 487 MSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMA 566 (714)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~ 566 (714)
..+++|++|.+ .+..++.++. +.++++|+.|.++ + +.-...+
T Consensus 148 --------------------------~~l~~L~~L~l---~~n~l~~~~~--l~~l~~L~~L~l~--~-n~l~~~~---- 189 (308)
T 1h6u_A 148 --------------------------AGLTNLQYLSI---GNAQVSDLTP--LANLSKLTTLKAD--D-NKISDIS---- 189 (308)
T ss_dssp --------------------------GGCTTCCEEEC---CSSCCCCCGG--GTTCTTCCEEECC--S-SCCCCCG----
T ss_pred --------------------------cCCCCccEEEc---cCCcCCCChh--hcCCCCCCEEECC--C-CccCcCh----
Confidence 45788999988 4455666654 7889999999995 3 3222111
Q ss_pred ccccccccCCccccccccccCccccccccCCCCCccchhhHHhhhcc
Q 044164 567 EFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 567 ~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~ 613 (714)
.+..+++|+.++|+.|.+.+.. | +..++.++.+++.+
T Consensus 190 -----~l~~l~~L~~L~L~~N~l~~~~---~--l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 190 -----PLASLPNLIEVHLKNNQISDVS---P--LANTSNLFIVTLTN 226 (308)
T ss_dssp -----GGGGCTTCCEEECTTSCCCBCG---G--GTTCTTCCEEEEEE
T ss_pred -----hhcCCCCCCEEEccCCccCccc---c--ccCCCCCCEEEccC
Confidence 2688999999999999988754 2 56778888888777
No 89
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.84 E-value=8.2e-10 Score=114.48 Aligned_cols=82 Identities=18% Similarity=0.210 Sum_probs=40.1
Q ss_pred ccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHH
Q 044164 326 SKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQI 405 (714)
Q Consensus 326 ~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~ 405 (714)
..+++++++++.+ ..++..+ .. ..++++.|+++++. ++...... ...+++|+.|++++|. ++....
T Consensus 7 ~~l~~l~~l~~~~-----~~l~~ip--~~--~~~~l~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-- 72 (290)
T 1p9a_G 7 SKVASHLEVNCDK-----RNLTALP--PD--LPKDTTILHLSENL-LYTFSLAT-LMPYTRLTQLNLDRAE-LTKLQV-- 72 (290)
T ss_dssp ECSTTCCEEECTT-----SCCSSCC--SC--CCTTCCEEECTTSC-CSEEEGGG-GTTCTTCCEEECTTSC-CCEEEC--
T ss_pred cccCCccEEECCC-----CCCCcCC--CC--CCCCCCEEEcCCCc-CCccCHHH-hhcCCCCCEEECCCCc-cCcccC--
Confidence 4567777777765 2222221 11 23567777777665 33221111 2335667777776665 332110
Q ss_pred HHHHcCCCeeEEEeeCCC
Q 044164 406 FARVLEKTLVDVRISSCK 423 (714)
Q Consensus 406 l~~~~~~~L~~L~L~~C~ 423 (714)
. ..+ ++|++|++++|.
T Consensus 73 ~-~~l-~~L~~L~Ls~N~ 88 (290)
T 1p9a_G 73 D-GTL-PVLGTLDLSHNQ 88 (290)
T ss_dssp C-SCC-TTCCEEECCSSC
T ss_pred C-CCC-CcCCEEECCCCc
Confidence 0 122 555555555543
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.84 E-value=4.2e-10 Score=115.64 Aligned_cols=207 Identities=16% Similarity=0.098 Sum_probs=128.1
Q ss_pred CcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHH
Q 044164 301 PLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAI 380 (714)
Q Consensus 301 p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l 380 (714)
++|++|+++++. ++... ......+++|++|++.++ .++... ...++.+++|+.|+++++. ++......
T Consensus 28 ~~l~~L~ls~n~-l~~~~---~~~~~~l~~L~~L~l~~n-----~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~- 95 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLG---SYSFFSFPELQVLDLSRC-----EIQTIE-DGAYQSLSHLSTLILTGNP-IQSLALGA- 95 (276)
T ss_dssp TTCCEEECTTCC-CCEEC---TTTTTTCTTCSEEECTTC-----CCCEEC-TTTTTTCTTCCEEECTTCC-CCEECTTT-
T ss_pred CCccEEECCCCc-ccccC---HhHhccccCCcEEECCCC-----cCCccC-HHHccCCcCCCEEECCCCc-cCccChhh-
Confidence 569999998874 33221 112367899999999883 333321 2357788999999999875 44322112
Q ss_pred HhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhh
Q 044164 381 SLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDH 460 (714)
Q Consensus 381 ~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~ 460 (714)
..++++|++|++.+|. ++...... ...+ ++|++|++++|... . ..++.....+++|++|+++.+.++...+..+
T Consensus 96 ~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l-~~L~~L~l~~n~l~-~-~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~- 169 (276)
T 2z62_A 96 FSGLSSLQKLVAVETN-LASLENFP-IGHL-KTLKELNVAHNLIQ-S-FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL- 169 (276)
T ss_dssp TTTCTTCCEEECTTSC-CCCSTTCC-CTTC-TTCCEEECCSSCCC-C-CCCCGGGGGCTTCCEEECCSSCCCEECGGGG-
T ss_pred hcCCccccEEECCCCC-ccccCchh-cccC-CCCCEEECcCCccc-e-ecCchhhccCCCCCEEECCCCCCCcCCHHHh-
Confidence 2458899999998887 44321111 2234 89999999998754 1 1122233456899999995444444433333
Q ss_pred hhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCcccccccccc----ceeeehhcccccccccc
Q 044164 461 EIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLK----YLSLWIAVGELLNPIRL 536 (714)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~l~~l~~ 536 (714)
..+.+|+ .|.+ .+..++.++.
T Consensus 170 ----------------------------------------------------~~l~~L~~l~l~L~l---s~n~l~~~~~ 194 (276)
T 2z62_A 170 ----------------------------------------------------RVLHQMPLLNLSLDL---SLNPMNFIQP 194 (276)
T ss_dssp ----------------------------------------------------HHHHTCTTCCEEEEC---CSSCCCEECT
T ss_pred ----------------------------------------------------hhhhhccccceeeec---CCCcccccCc
Confidence 2344555 3444 3344566654
Q ss_pred cCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccc
Q 044164 537 AGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 537 ~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~ 591 (714)
. ....++|++|+++ ++... ..|. ..+..+++|+.++|+.|.+.+
T Consensus 195 ~-~~~~~~L~~L~L~--~n~l~-~~~~-------~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 195 G-AFKEIRLKELALD--TNQLK-SVPD-------GIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp T-SSCSCCEEEEECC--SSCCS-CCCT-------TTTTTCCSCCEEECCSSCBCC
T ss_pred c-ccCCCcccEEECC--CCcee-ecCH-------hHhcccccccEEEccCCcccc
Confidence 4 3445689999995 33322 2333 246789999999999998776
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.83 E-value=8.6e-10 Score=113.00 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=41.4
Q ss_pred cCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcC
Q 044164 359 KGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIR 438 (714)
Q Consensus 359 ~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~ 438 (714)
++|+.|+++++. ++...... ..++++|++|++++|. ++... ..+...+ ++|++|++++|.... ........+
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~l~~n~-l~~i~-~~~~~~l-~~L~~L~l~~n~l~~---~~~~~~~~l 108 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSKA-FHRLTKLRLLYLNDNK-LQTLP-AGIFKEL-KNLETLWVTDNKLQA---LPIGVFDQL 108 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTTS-SSSCTTCCEEECCSSC-CSCCC-TTTTSSC-TTCCEEECCSSCCCC---CCTTTTTTC
T ss_pred CCCCEEECcCCC-CCeeCHHH-hcCCCCCCEEECCCCc-cCeeC-hhhhcCC-CCCCEEECCCCcCCc---CCHhHcccc
Confidence 568888888765 33221111 2346777888877765 43211 1111223 677777777665321 111112334
Q ss_pred CCCCEEEEe
Q 044164 439 DRIQRLHVD 447 (714)
Q Consensus 439 ~~L~~L~l~ 447 (714)
++|++|+++
T Consensus 109 ~~L~~L~l~ 117 (270)
T 2o6q_A 109 VNLAELRLD 117 (270)
T ss_dssp SSCCEEECC
T ss_pred cCCCEEECC
Confidence 566666663
No 92
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.82 E-value=3.4e-10 Score=116.31 Aligned_cols=105 Identities=14% Similarity=0.103 Sum_probs=60.0
Q ss_pred CCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHH
Q 044164 329 PRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFAR 408 (714)
Q Consensus 329 ~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~ 408 (714)
++|++|++++ +.++... ...++.+++|+.|++++|. ++...... ...+++|++|++++|. ++......+ .
T Consensus 28 ~~l~~L~ls~-----n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~-~ 97 (276)
T 2z62_A 28 FSTKNLDLSF-----NPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGA-YQSLSHLSTLILTGNP-IQSLALGAF-S 97 (276)
T ss_dssp TTCCEEECTT-----CCCCEEC-TTTTTTCTTCSEEECTTCC-CCEECTTT-TTTCTTCCEEECTTCC-CCEECTTTT-T
T ss_pred CCccEEECCC-----CcccccC-HhHhccccCCcEEECCCCc-CCccCHHH-ccCCcCCCEEECCCCc-cCccChhhh-c
Confidence 4689999987 3344332 2356778889999998874 44221111 2347788888888776 443221112 2
Q ss_pred HcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEe
Q 044164 409 VLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVD 447 (714)
Q Consensus 409 ~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~ 447 (714)
.+ ++|++|++++|...... ......+++|++|+++
T Consensus 98 ~l-~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~ 132 (276)
T 2z62_A 98 GL-SSLQKLVAVETNLASLE---NFPIGHLKTLKELNVA 132 (276)
T ss_dssp TC-TTCCEEECTTSCCCCST---TCCCTTCTTCCEEECC
T ss_pred CC-ccccEEECCCCCccccC---chhcccCCCCCEEECc
Confidence 33 67777777776543111 0012235667777774
No 93
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=5.7e-08 Score=103.55 Aligned_cols=135 Identities=17% Similarity=0.161 Sum_probs=87.5
Q ss_pred CCcccceecccccCcCCChHHHHHHh-ccCCCccEEEecccc---CccccCCCcchHHHh--cCCcCcceeeeecCCCCC
Q 044164 300 LPLLEELVLDVGNNVRDTWPALELLN-SKCPRLKSLKLGQVH---GICREIDSSMPAAGV--ALWKGLESLSIKNSADLT 373 (714)
Q Consensus 300 ~p~L~~L~L~~c~~l~~~~~~l~~l~-~~~~~L~~L~L~~~~---~~c~~i~~~~~l~~l--~~~~~L~~L~L~~c~~lt 373 (714)
.++|++|++..|. +++. .+..+. ..+|+|++|+|+... +.+..+.+.. ..+ ..+|+|+.|.+.+|. ++
T Consensus 192 ~~~L~~L~L~~~~-l~~~--~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~--~~l~~~~~p~Lr~L~L~~~~-i~ 265 (362)
T 2ra8_A 192 RPNLKSLEIISGG-LPDS--VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR--PLFSKDRFPNLKWLGIVDAE-EQ 265 (362)
T ss_dssp CTTCSEEEEECSB-CCHH--HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG--GGSCTTTCTTCCEEEEESCT-TH
T ss_pred CCCCcEEEEecCC-CChH--HHHHHHHccCCCCcEEEEeccccccccchhHHHHH--HHHhcCCCCCcCEEeCCCCC-Cc
Confidence 4788888887664 3332 344443 368888888885311 0001111110 112 358999999999887 67
Q ss_pred HHHHHHHHh--cCCCccEEEEeCCCCCCHHHHHHHH---HHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEE
Q 044164 374 DSALIAISL--GCSNLTKFEVQGCNKITKMGMQIFA---RVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHV 446 (714)
Q Consensus 374 d~~l~~l~~--~~~~L~~L~L~~c~~lt~~~l~~l~---~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l 446 (714)
+.+...++. .+|+|+.|+|+.|. +++.|...++ ..+ ++|+.|++++|. + ++....++...+ ...+++
T Consensus 266 ~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l-~~L~~L~L~~n~-i-~d~~~~~l~~al--g~~~~~ 337 (362)
T 2ra8_A 266 NVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKI-KHLKFINMKYNY-L-SDEMKKELQKSL--PMKIDV 337 (362)
T ss_dssp HHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHH-TTCSEEECCSBB-C-CHHHHHHHHHHC--CSEEEC
T ss_pred hHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccC-CcceEEECCCCc-C-CHHHHHHHHHHc--CCEEEe
Confidence 766666664 47899999998776 9998887776 345 899999999885 4 466777777643 334554
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.79 E-value=1.1e-09 Score=112.27 Aligned_cols=204 Identities=12% Similarity=0.076 Sum_probs=124.8
Q ss_pred CcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHH
Q 044164 301 PLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAI 380 (714)
Q Consensus 301 p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l 380 (714)
++.+.+++++.. ++.-. . .-.++|++|++.++ .++... ...++.+++|++|+++++. ++... ..+
T Consensus 16 ~~~~~l~~~~~~-l~~ip---~---~~~~~l~~L~l~~n-----~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~i~-~~~ 80 (270)
T 2o6q_A 16 NNKNSVDCSSKK-LTAIP---S---NIPADTKKLDLQSN-----KLSSLP-SKAFHRLTKLRLLYLNDNK-LQTLP-AGI 80 (270)
T ss_dssp TTTTEEECTTSC-CSSCC---S---CCCTTCSEEECCSS-----CCSCCC-TTSSSSCTTCCEEECCSSC-CSCCC-TTT
T ss_pred CCCCEEEccCCC-CCccC---C---CCCCCCCEEECcCC-----CCCeeC-HHHhcCCCCCCEEECCCCc-cCeeC-hhh
Confidence 357788887653 32211 0 12357999999883 344331 2367889999999999875 43211 122
Q ss_pred HhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhh
Q 044164 381 SLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDH 460 (714)
Q Consensus 381 ~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~ 460 (714)
...+++|++|++++|. ++..... ....+ ++|++|++++|.... ........+++|++|+++.+.++...+..+
T Consensus 81 ~~~l~~L~~L~l~~n~-l~~~~~~-~~~~l-~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~- 153 (270)
T 2o6q_A 81 FKELKNLETLWVTDNK-LQALPIG-VFDQL-VNLAELRLDRNQLKS---LPPRVFDSLTKLTYLSLGYNELQSLPKGVF- 153 (270)
T ss_dssp TSSCTTCCEEECCSSC-CCCCCTT-TTTTC-SSCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTT-
T ss_pred hcCCCCCCEEECCCCc-CCcCCHh-Hcccc-cCCCEEECCCCccCe---eCHHHhCcCcCCCEEECCCCcCCccCHhHc-
Confidence 3458999999999987 5532211 22344 899999999987541 111222456889999985444333222222
Q ss_pred hhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCC
Q 044164 461 EIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLE 540 (714)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~ 540 (714)
..+++|+.|.+ .+..++.++...+.
T Consensus 154 ----------------------------------------------------~~l~~L~~L~L---~~n~l~~~~~~~~~ 178 (270)
T 2o6q_A 154 ----------------------------------------------------DKLTSLKELRL---YNNQLKRVPEGAFD 178 (270)
T ss_dssp ----------------------------------------------------TTCTTCCEEEC---CSSCCSCCCTTTTT
T ss_pred ----------------------------------------------------cCCcccceeEe---cCCcCcEeChhHhc
Confidence 34677777777 44456666665677
Q ss_pred CCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccc
Q 044164 541 NCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 541 ~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~ 591 (714)
++++|+.|.++ ++ .-...|. ..+..+++|+.++|+.|.+.+
T Consensus 179 ~l~~L~~L~L~--~N-~l~~~~~-------~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 179 KLTELKTLKLD--NN-QLKRVPE-------GAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TCTTCCEEECC--SS-CCSCCCT-------TTTTTCTTCCEEECCSSCBCC
T ss_pred cCCCcCEEECC--CC-cCCcCCH-------HHhccccCCCEEEecCCCeeC
Confidence 78888888885 32 2222222 145677788888888876544
No 95
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.76 E-value=1.2e-09 Score=109.77 Aligned_cols=83 Identities=11% Similarity=0.068 Sum_probs=44.3
Q ss_pred cCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcC
Q 044164 359 KGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIR 438 (714)
Q Consensus 359 ~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~ 438 (714)
++|+.|+++++. ++...-. ...++++|++|++++|..++.-....+ ..+ ++|++|++++|..+... .......+
T Consensus 31 ~~l~~L~l~~n~-l~~i~~~-~~~~l~~L~~L~l~~n~~l~~i~~~~f-~~l-~~L~~L~l~~~n~l~~i--~~~~f~~l 104 (239)
T 2xwt_C 31 PSTQTLKLIETH-LRTIPSH-AFSNLPNISRIYVSIDVTLQQLESHSF-YNL-SKVTHIEIRNTRNLTYI--DPDALKEL 104 (239)
T ss_dssp TTCCEEEEESCC-CSEECTT-TTTTCTTCCEEEEECCSSCCEECTTTE-ESC-TTCCEEEEEEETTCCEE--CTTSEECC
T ss_pred CcccEEEEeCCc-ceEECHH-HccCCCCCcEEeCCCCCCcceeCHhHc-CCC-cCCcEEECCCCCCeeEc--CHHHhCCC
Confidence 478888888765 4322111 123477888888887753432111111 233 67777877774444211 11112345
Q ss_pred CCCCEEEEe
Q 044164 439 DRIQRLHVD 447 (714)
Q Consensus 439 ~~L~~L~l~ 447 (714)
++|++|+++
T Consensus 105 ~~L~~L~l~ 113 (239)
T 2xwt_C 105 PLLKFLGIF 113 (239)
T ss_dssp TTCCEEEEE
T ss_pred CCCCEEeCC
Confidence 677777773
No 96
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.75 E-value=5.2e-09 Score=108.44 Aligned_cols=202 Identities=13% Similarity=0.041 Sum_probs=132.6
Q ss_pred cCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHH
Q 044164 299 SLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALI 378 (714)
Q Consensus 299 ~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~ 378 (714)
.++++++++++++. ++.-. ..-.++++.|++.+ +.++... ...+..+++|+.|+++++. ++...
T Consensus 8 ~l~~l~~l~~~~~~-l~~ip------~~~~~~l~~L~L~~-----N~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~-- 71 (290)
T 1p9a_G 8 KVASHLEVNCDKRN-LTALP------PDLPKDTTILHLSE-----NLLYTFS-LATLMPYTRLTQLNLDRAE-LTKLQ-- 71 (290)
T ss_dssp CSTTCCEEECTTSC-CSSCC------SCCCTTCCEEECTT-----SCCSEEE-GGGGTTCTTCCEEECTTSC-CCEEE--
T ss_pred ccCCccEEECCCCC-CCcCC------CCCCCCCCEEEcCC-----CcCCccC-HHHhhcCCCCCEEECCCCc-cCccc--
Confidence 45778888887653 32211 02236799999987 3344432 3467888999999999875 54321
Q ss_pred HHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccch
Q 044164 379 AISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQ 458 (714)
Q Consensus 379 ~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~ 458 (714)
.. ..+++|+.|+++++. ++. ++.....+ ++|++|++++|.... ..+.....+++|+.|+++.+.++...+..
T Consensus 72 ~~-~~l~~L~~L~Ls~N~-l~~--l~~~~~~l-~~L~~L~l~~N~l~~---l~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 143 (290)
T 1p9a_G 72 VD-GTLPVLGTLDLSHNQ-LQS--LPLLGQTL-PALTVLDVSFNRLTS---LPLGALRGLGELQELYLKGNELKTLPPGL 143 (290)
T ss_dssp CC-SCCTTCCEEECCSSC-CSS--CCCCTTTC-TTCCEEECCSSCCCC---CCSSTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred CC-CCCCcCCEEECCCCc-CCc--CchhhccC-CCCCEEECCCCcCcc---cCHHHHcCCCCCCEEECCCCCCCccChhh
Confidence 11 458899999999887 542 22223344 899999999986431 11122235688999999544443332222
Q ss_pred hhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccC
Q 044164 459 DHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAG 538 (714)
Q Consensus 459 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~ 538 (714)
+ ..+++|+.|.+ .+..++.++...
T Consensus 144 ~-----------------------------------------------------~~l~~L~~L~L---~~N~l~~l~~~~ 167 (290)
T 1p9a_G 144 L-----------------------------------------------------TPTPKLEKLSL---ANNNLTELPAGL 167 (290)
T ss_dssp T-----------------------------------------------------TTCTTCCEEEC---TTSCCSCCCTTT
T ss_pred c-----------------------------------------------------ccccCCCEEEC---CCCcCCccCHHH
Confidence 2 35678888888 556678888776
Q ss_pred CCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccc
Q 044164 539 LENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 539 l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~ 591 (714)
+.++++|+.|.++ +| +-...|. .+...++|+.++|+.|.+..
T Consensus 168 ~~~l~~L~~L~L~--~N-~l~~ip~--------~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 168 LNGLENLDTLLLQ--EN-SLYTIPK--------GFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTCTTCCEEECC--SS-CCCCCCT--------TTTTTCCCSEEECCSCCBCC
T ss_pred hcCcCCCCEEECC--CC-cCCccCh--------hhcccccCCeEEeCCCCccC
Confidence 7889999999995 33 3334455 55667789999999997553
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=98.73 E-value=8.3e-10 Score=110.84 Aligned_cols=104 Identities=13% Similarity=0.108 Sum_probs=63.8
Q ss_pred CCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHH
Q 044164 329 PRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFAR 408 (714)
Q Consensus 329 ~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~ 408 (714)
++|++|++.+ +.++... ...++.+++|+.|+++++..++...-. ...++++|++|++++|..++......+ .
T Consensus 31 ~~l~~L~l~~-----n~l~~i~-~~~~~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~~~~f-~ 102 (239)
T 2xwt_C 31 PSTQTLKLIE-----THLRTIP-SHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYIDPDAL-K 102 (239)
T ss_dssp TTCCEEEEES-----CCCSEEC-TTTTTTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEECTTSE-E
T ss_pred CcccEEEEeC-----CcceEEC-HHHccCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcCHHHh-C
Confidence 4799999987 3344332 235778899999999988534322111 124588999999988544654221111 2
Q ss_pred HcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCC---EEEE
Q 044164 409 VLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQ---RLHV 446 (714)
Q Consensus 409 ~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~---~L~l 446 (714)
.+ ++|++|++++|... . ++. ...+++|+ .|++
T Consensus 103 ~l-~~L~~L~l~~n~l~-~---lp~-~~~l~~L~~L~~L~l 137 (239)
T 2xwt_C 103 EL-PLLKFLGIFNTGLK-M---FPD-LTKVYSTDIFFILEI 137 (239)
T ss_dssp CC-TTCCEEEEEEECCC-S---CCC-CTTCCBCCSEEEEEE
T ss_pred CC-CCCCEEeCCCCCCc-c---ccc-cccccccccccEEEC
Confidence 34 88999999988643 1 122 23345666 7777
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.65 E-value=7.9e-09 Score=101.25 Aligned_cols=86 Identities=12% Similarity=0.017 Sum_probs=48.3
Q ss_pred cccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccc
Q 044164 515 WTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFAL 594 (714)
Q Consensus 515 ~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~ 594 (714)
+++|++|.+ .+..++.++...+.++++|+.|.++ ++.... .|. ..+..+++|+.++|+.|.+.|
T Consensus 99 l~~L~~L~L---~~N~l~~~~~~~~~~l~~L~~L~l~--~N~l~~-~~~-------~~~~~l~~L~~L~l~~N~~~~--- 162 (208)
T 2o6s_A 99 LTQLKELAL---NTNQLQSLPDGVFDKLTQLKDLRLY--QNQLKS-VPD-------GVFDRLTSLQYIWLHDNPWDC--- 162 (208)
T ss_dssp CTTCCEEEC---CSSCCCCCCTTTTTTCTTCCEEECC--SSCCSC-CCT-------TTTTTCTTCCEEECCSCCBCC---
T ss_pred ccCCCEEEc---CCCcCcccCHhHhccCCcCCEEECC--CCccce-eCH-------HHhccCCCccEEEecCCCeec---
Confidence 445555554 3333444444445667777777774 222221 221 135667777777777776554
Q ss_pred cCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchh
Q 044164 595 TAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAA 642 (714)
Q Consensus 595 ~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 642 (714)
+++.++.|++.+ |+++|.+|++
T Consensus 163 -------~~~~l~~L~~~~-------------------n~~~g~ip~~ 184 (208)
T 2o6s_A 163 -------TCPGIRYLSEWI-------------------NKHSGVVRNS 184 (208)
T ss_dssp -------CTTTTHHHHHHH-------------------HHCTTTBBCT
T ss_pred -------CCCCHHHHHHHH-------------------HhCCceeecc
Confidence 344566666666 7777777755
No 99
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.65 E-value=1.9e-08 Score=101.75 Aligned_cols=83 Identities=16% Similarity=0.244 Sum_probs=39.9
Q ss_pred cccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccc
Q 044164 515 WTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFAL 594 (714)
Q Consensus 515 ~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~ 594 (714)
+++|++|.+ .+..++.++...+.++++|++|.++ ++.... .|. ..+..+++|+.++|+.|.+.+..
T Consensus 106 l~~L~~L~L---~~N~l~~~~~~~~~~l~~L~~L~Ls--~N~l~~-~~~-------~~~~~l~~L~~L~L~~N~l~~~~- 171 (251)
T 3m19_A 106 LTQLDKLYL---GGNQLKSLPSGVFDRLTKLKELRLN--TNQLQS-IPA-------GAFDKLTNLQTLSLSTNQLQSVP- 171 (251)
T ss_dssp CTTCCEEEC---CSSCCCCCCTTTTTTCTTCCEEECC--SSCCCC-CCT-------TTTTTCTTCCEEECCSSCCSCCC-
T ss_pred cCCCCEEEc---CCCcCCCcChhHhccCCcccEEECc--CCcCCc-cCH-------HHcCcCcCCCEEECCCCcCCccC-
Confidence 455555555 3334445544444556666666663 221111 111 13455556666666666555433
Q ss_pred cCCCCCccchhhHHhhhcc
Q 044164 595 TAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 595 ~~p~~~~~l~~~~~~~l~~ 613 (714)
|..+..++.++.+++.+
T Consensus 172 --~~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 172 --HGAFDRLGKLQTITLFG 188 (251)
T ss_dssp --TTTTTTCTTCCEEECCS
T ss_pred --HHHHhCCCCCCEEEeeC
Confidence 33344455455555555
No 100
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.64 E-value=5.5e-08 Score=103.66 Aligned_cols=86 Identities=15% Similarity=0.181 Sum_probs=62.8
Q ss_pred cCCCccEEEeccccCccccCCCcchHHHh---cCCcCcceeeeecCCCCCHHHHHHHHhc---CCCccEEEEeCCCCCCH
Q 044164 327 KCPRLKSLKLGQVHGICREIDSSMPAAGV---ALWKGLESLSIKNSADLTDSALIAISLG---CSNLTKFEVQGCNKITK 400 (714)
Q Consensus 327 ~~~~L~~L~L~~~~~~c~~i~~~~~l~~l---~~~~~L~~L~L~~c~~ltd~~l~~l~~~---~~~L~~L~L~~c~~lt~ 400 (714)
.+|+|++|.+.+|. +++.+ ...+ ..+++|++|+|+.+. +++.+...+..+ +++|+.|+|++|. +++
T Consensus 250 ~~p~Lr~L~L~~~~-----i~~~~-~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d 321 (362)
T 2ra8_A 250 RFPNLKWLGIVDAE-----EQNVV-VEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKYNY-LSD 321 (362)
T ss_dssp TCTTCCEEEEESCT-----THHHH-HHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTTHHHHTTCSEEECCSBB-CCH
T ss_pred CCCCcCEEeCCCCC-----CchHH-HHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhhcccCCcceEEECCCCc-CCH
Confidence 57888888887732 22221 1222 257899999998654 999988877643 7999999999987 999
Q ss_pred HHHHHHHHHcCCCeeEEEeeCCC
Q 044164 401 MGMQIFARVLEKTLVDVRISSCK 423 (714)
Q Consensus 401 ~~l~~l~~~~~~~L~~L~L~~C~ 423 (714)
.++..+...+ ...++++...
T Consensus 322 ~~~~~l~~al---g~~~~~~~~~ 341 (362)
T 2ra8_A 322 EMKKELQKSL---PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHC---CSEEECCSBC
T ss_pred HHHHHHHHHc---CCEEEecCCc
Confidence 9999988753 4567887654
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.55 E-value=6.7e-08 Score=100.04 Aligned_cols=124 Identities=13% Similarity=0.174 Sum_probs=80.3
Q ss_pred cCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHH
Q 044164 299 SLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALI 378 (714)
Q Consensus 299 ~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~ 378 (714)
.+++|+.|++++|. ++.. .. ...+++|++|++++ +.+++.. .+..+++|+.|+++++. +++ +.
T Consensus 44 ~l~~L~~L~l~~~~-i~~~----~~-~~~l~~L~~L~L~~-----n~l~~~~---~l~~l~~L~~L~l~~n~-l~~--~~ 106 (291)
T 1h6t_A 44 ELNSIDQIIANNSD-IKSV----QG-IQYLPNVTKLFLNG-----NKLTDIK---PLANLKNLGWLFLDENK-VKD--LS 106 (291)
T ss_dssp HHHTCCEEECTTSC-CCCC----TT-GGGCTTCCEEECCS-----SCCCCCG---GGTTCTTCCEEECCSSC-CCC--GG
T ss_pred hcCcccEEEccCCC-cccC----hh-HhcCCCCCEEEccC-----CccCCCc---ccccCCCCCEEECCCCc-CCC--Ch
Confidence 45788889988874 3322 12 36788899999987 3444432 27788889999998876 544 22
Q ss_pred HHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEeccc
Q 044164 379 AISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVW 450 (714)
Q Consensus 379 ~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~ 450 (714)
. ...+++|+.|++++|. +++. ..+ ..+ ++|+.|++++|... .. .. ...+++|+.|+++.+.
T Consensus 107 ~-l~~l~~L~~L~L~~n~-i~~~--~~l-~~l-~~L~~L~l~~n~l~-~~---~~-l~~l~~L~~L~L~~N~ 167 (291)
T 1h6t_A 107 S-LKDLKKLKSLSLEHNG-ISDI--NGL-VHL-PQLESLYLGNNKIT-DI---TV-LSRLTKLDTLSLEDNQ 167 (291)
T ss_dssp G-GTTCTTCCEEECTTSC-CCCC--GGG-GGC-TTCCEEECCSSCCC-CC---GG-GGGCTTCSEEECCSSC
T ss_pred h-hccCCCCCEEECCCCc-CCCC--hhh-cCC-CCCCEEEccCCcCC-cc---hh-hccCCCCCEEEccCCc
Confidence 3 3457888888888886 5542 222 234 88888888887643 11 22 2346788888884333
No 102
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.54 E-value=3.7e-08 Score=95.60 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=7.5
Q ss_pred HhcCCcCcceeeeecC
Q 044164 354 GVALWKGLESLSIKNS 369 (714)
Q Consensus 354 ~l~~~~~L~~L~L~~c 369 (714)
.+..+++|++|++++|
T Consensus 83 ~l~~l~~L~~L~l~~n 98 (197)
T 4ezg_A 83 PISGLSNLERLRIMGK 98 (197)
T ss_dssp GGTTCTTCCEEEEECT
T ss_pred hhhcCCCCCEEEeECC
Confidence 3344445555555444
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.54 E-value=2e-07 Score=96.49 Aligned_cols=171 Identities=15% Similarity=0.170 Sum_probs=95.4
Q ss_pred cCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHH
Q 044164 327 KCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIF 406 (714)
Q Consensus 327 ~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l 406 (714)
.+++|++|++.++ .+... ..++.+++|+.|++++|. +++.. . ...+++|+.|++++|. +++ +..
T Consensus 44 ~l~~L~~L~l~~~-----~i~~~---~~~~~l~~L~~L~L~~n~-l~~~~--~-l~~l~~L~~L~l~~n~-l~~--~~~- 107 (291)
T 1h6t_A 44 ELNSIDQIIANNS-----DIKSV---QGIQYLPNVTKLFLNGNK-LTDIK--P-LANLKNLGWLFLDENK-VKD--LSS- 107 (291)
T ss_dssp HHHTCCEEECTTS-----CCCCC---TTGGGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSC-CCC--GGG-
T ss_pred hcCcccEEEccCC-----CcccC---hhHhcCCCCCEEEccCCc-cCCCc--c-cccCCCCCEEECCCCc-CCC--Chh-
Confidence 4566777777762 23322 246667777777777765 43321 2 3447777777777776 444 222
Q ss_pred HHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhhh
Q 044164 407 ARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIM 486 (714)
Q Consensus 407 ~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (714)
...+ ++|++|++++|... . +..+ ..+++|+.|+++.+.++.. ..+
T Consensus 108 l~~l-~~L~~L~L~~n~i~-~---~~~l-~~l~~L~~L~l~~n~l~~~--~~l--------------------------- 152 (291)
T 1h6t_A 108 LKDL-KKLKSLSLEHNGIS-D---INGL-VHLPQLESLYLGNNKITDI--TVL--------------------------- 152 (291)
T ss_dssp GTTC-TTCCEEECTTSCCC-C---CGGG-GGCTTCCEEECCSSCCCCC--GGG---------------------------
T ss_pred hccC-CCCCEEECCCCcCC-C---Chhh-cCCCCCCEEEccCCcCCcc--hhh---------------------------
Confidence 2333 77777777777543 1 1222 3457777777743332221 222
Q ss_pred cChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCccccc
Q 044164 487 MSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMA 566 (714)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~ 566 (714)
..+++|+.|++ .+..++.++. +..+++|+.|.++ ++ .-..
T Consensus 153 --------------------------~~l~~L~~L~L---~~N~l~~~~~--l~~l~~L~~L~L~--~N-~i~~------ 192 (291)
T 1h6t_A 153 --------------------------SRLTKLDTLSL---EDNQISDIVP--LAGLTKLQNLYLS--KN-HISD------ 192 (291)
T ss_dssp --------------------------GGCTTCSEEEC---CSSCCCCCGG--GTTCTTCCEEECC--SS-CCCB------
T ss_pred --------------------------ccCCCCCEEEc---cCCccccchh--hcCCCccCEEECC--CC-cCCC------
Confidence 34566777666 3344454443 5667777777774 22 1111
Q ss_pred ccccccccCCccccccccccCcccc
Q 044164 567 EFGLNSLVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 567 ~~~l~~l~~~~~L~~~~l~~~~~~~ 591 (714)
+..+..+++|+.++|+.|.++.
T Consensus 193 ---l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 193 ---LRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp ---CGGGTTCTTCSEEEEEEEEEEC
T ss_pred ---ChhhccCCCCCEEECcCCcccC
Confidence 1235667777777777776654
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.52 E-value=2.9e-08 Score=100.34 Aligned_cols=161 Identities=12% Similarity=0.055 Sum_probs=110.2
Q ss_pred CcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhc
Q 044164 358 WKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPI 437 (714)
Q Consensus 358 ~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~ 437 (714)
.++|+.|+++++. ++...... ..++++|++|++++|. ++...... ...+ ++|++|++++|.... ........
T Consensus 34 ~~~l~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~-~~~l-~~L~~L~L~~n~l~~---~~~~~~~~ 105 (251)
T 3m19_A 34 PADTEKLDLQSTG-LATLSDAT-FRGLTKLTWLNLDYNQ-LQTLSAGV-FDDL-TELGTLGLANNQLAS---LPLGVFDH 105 (251)
T ss_dssp CTTCCEEECTTSC-CCCCCTTT-TTTCTTCCEEECTTSC-CCCCCTTT-TTTC-TTCCEEECTTSCCCC---CCTTTTTT
T ss_pred CCCCCEEEccCCC-cCccCHhH-hcCcccCCEEECCCCc-CCccCHhH-hccC-CcCCEEECCCCcccc---cChhHhcc
Confidence 3689999999986 43322112 2358999999999987 55432111 2334 899999999987541 11222345
Q ss_pred CCCCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCcccccccc
Q 044164 438 RDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTK 517 (714)
Q Consensus 438 ~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (714)
+++|++|+++.+.++...+..+ ..+++
T Consensus 106 l~~L~~L~L~~N~l~~~~~~~~-----------------------------------------------------~~l~~ 132 (251)
T 3m19_A 106 LTQLDKLYLGGNQLKSLPSGVF-----------------------------------------------------DRLTK 132 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTTTT-----------------------------------------------------TTCTT
T ss_pred cCCCCEEEcCCCcCCCcChhHh-----------------------------------------------------ccCCc
Confidence 6899999996555443333322 45788
Q ss_pred ccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccc
Q 044164 518 LKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGF 592 (714)
Q Consensus 518 L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~ 592 (714)
|+.|.+ .+..++.++...++++++|+.|.++ +|......+. .+..+++|+.++|+.|.+.+.
T Consensus 133 L~~L~L---s~N~l~~~~~~~~~~l~~L~~L~L~--~N~l~~~~~~--------~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 133 LKELRL---NTNQLQSIPAGAFDKLTNLQTLSLS--TNQLQSVPHG--------AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CCEEEC---CSSCCCCCCTTTTTTCTTCCEEECC--SSCCSCCCTT--------TTTTCTTCCEEECCSCCBCTT
T ss_pred ccEEEC---cCCcCCccCHHHcCcCcCCCEEECC--CCcCCccCHH--------HHhCCCCCCEEEeeCCceeCC
Confidence 999988 5567788887678999999999996 4433332222 578899999999999988763
No 105
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.50 E-value=8.5e-08 Score=93.05 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=32.2
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEeccc
Q 044164 384 CSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVW 450 (714)
Q Consensus 384 ~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~ 450 (714)
+++|+.|++++|. +++ ++. ...+ ++|++|++++|... . +..+ ..+++|++|+++.+.
T Consensus 43 l~~L~~L~l~~n~-i~~--l~~-l~~l-~~L~~L~l~~n~~~-~---~~~l-~~l~~L~~L~l~~n~ 99 (197)
T 4ezg_A 43 MNSLTYITLANIN-VTD--LTG-IEYA-HNIKDLTINNIHAT-N---YNPI-SGLSNLERLRIMGKD 99 (197)
T ss_dssp HHTCCEEEEESSC-CSC--CTT-GGGC-TTCSEEEEESCCCS-C---CGGG-TTCTTCCEEEEECTT
T ss_pred cCCccEEeccCCC-ccC--hHH-HhcC-CCCCEEEccCCCCC-c---chhh-hcCCCCCEEEeECCc
Confidence 4668888887776 443 111 2334 77888888777322 1 1122 235777777774333
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.47 E-value=9e-08 Score=109.22 Aligned_cols=124 Identities=12% Similarity=0.176 Sum_probs=81.0
Q ss_pred cCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHH
Q 044164 299 SLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALI 378 (714)
Q Consensus 299 ~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~ 378 (714)
.+++|+.|++++|. +... .. +..+++|+.|+|++ +.+++.. .+..+++|+.|+|++|. +++ +.
T Consensus 41 ~L~~L~~L~l~~n~-i~~l----~~-l~~l~~L~~L~Ls~-----N~l~~~~---~l~~l~~L~~L~Ls~N~-l~~--l~ 103 (605)
T 1m9s_A 41 ELNSIDQIIANNSD-IKSV----QG-IQYLPNVTKLFLNG-----NKLTDIK---PLTNLKNLGWLFLDENK-IKD--LS 103 (605)
T ss_dssp HHTTCCCCBCTTCC-CCCC----TT-GGGCTTCCEEECTT-----SCCCCCG---GGGGCTTCCEEECCSSC-CCC--CT
T ss_pred cCCCCCEEECcCCC-CCCC----hH-HccCCCCCEEEeeC-----CCCCCCh---hhccCCCCCEEECcCCC-CCC--Ch
Confidence 45789999998874 3332 12 36789999999987 3344432 37788999999999885 443 22
Q ss_pred HHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEeccc
Q 044164 379 AISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVW 450 (714)
Q Consensus 379 ~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~ 450 (714)
. ...+++|+.|+|++|. +++ +..+ ..+ ++|+.|+|++|... . +. ....+++|+.|+|+.+.
T Consensus 104 ~-l~~l~~L~~L~Ls~N~-l~~--l~~l-~~l-~~L~~L~Ls~N~l~-~---l~-~l~~l~~L~~L~Ls~N~ 164 (605)
T 1m9s_A 104 S-LKDLKKLKSLSLEHNG-ISD--INGL-VHL-PQLESLYLGNNKIT-D---IT-VLSRLTKLDTLSLEDNQ 164 (605)
T ss_dssp T-STTCTTCCEEECTTSC-CCC--CGGG-GGC-TTCSEEECCSSCCC-C---CG-GGGSCTTCSEEECCSSC
T ss_pred h-hccCCCCCEEEecCCC-CCC--Cccc-cCC-CccCEEECCCCccC-C---ch-hhcccCCCCEEECcCCc
Confidence 2 2347888888888887 554 2222 344 88888888887644 1 12 22356788888884333
No 107
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.46 E-value=1.1e-06 Score=84.37 Aligned_cols=126 Identities=17% Similarity=0.146 Sum_probs=67.0
Q ss_pred HHHHHHHhcCCcccceecccccCcCCChH-HHHHHhccCCCccEEEeccccCccccCCCcch---HHHhcCCcCcceeee
Q 044164 291 TALGDFFESLPLLEELVLDVGNNVRDTWP-ALELLNSKCPRLKSLKLGQVHGICREIDSSMP---AAGVALWKGLESLSI 366 (714)
Q Consensus 291 ~~l~~l~~~~p~L~~L~L~~c~~l~~~~~-~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~---l~~l~~~~~L~~L~L 366 (714)
+.+..+...++.|++|++++|..+++.+. .+...+..+++|++|+|++ +.+++.+. ...+...++|++|+|
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-----n~i~~~g~~~l~~~L~~n~~L~~L~L 100 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-----TRSNDPVAFALAEMLKVNNTLKSLNV 100 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-----SCCCHHHHHHHHHHHHHCSSCCEEEC
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-----CCCChHHHHHHHHHHHhCCCcCEEEC
Confidence 34555566677777777777644544331 1223334556666666665 23443321 112334556666666
Q ss_pred ecCCCCCHHHHHHHHhc---CCCccEEEE--eCCCCCCHHHHHHHHHHc--CCCeeEEEeeCCC
Q 044164 367 KNSADLTDSALIAISLG---CSNLTKFEV--QGCNKITKMGMQIFARVL--EKTLVDVRISSCK 423 (714)
Q Consensus 367 ~~c~~ltd~~l~~l~~~---~~~L~~L~L--~~c~~lt~~~l~~l~~~~--~~~L~~L~L~~C~ 423 (714)
++|. |++.+...++.. .++|++|+| ++|. |++.|...++..+ .++|++|++++|.
T Consensus 101 ~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 101 ESNF-ISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 6654 666665555433 345666666 4444 6666654444321 1556666666554
No 108
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.46 E-value=2.6e-07 Score=105.38 Aligned_cols=123 Identities=18% Similarity=0.230 Sum_probs=73.8
Q ss_pred HhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHH
Q 044164 297 FESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSA 376 (714)
Q Consensus 297 ~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~ 376 (714)
+..+++|+.|+|++|. ++... . ...+++|+.|+|+++ .+.+. ..+..+++|+.|+|++|. +++
T Consensus 61 l~~l~~L~~L~Ls~N~-l~~~~----~-l~~l~~L~~L~Ls~N-----~l~~l---~~l~~l~~L~~L~Ls~N~-l~~-- 123 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNK-LTDIK----P-LTNLKNLGWLFLDEN-----KIKDL---SSLKDLKKLKSLSLEHNG-ISD-- 123 (605)
T ss_dssp GGGCTTCCEEECTTSC-CCCCG----G-GGGCTTCCEEECCSS-----CCCCC---TTSTTCTTCCEEECTTSC-CCC--
T ss_pred HccCCCCCEEEeeCCC-CCCCh----h-hccCCCCCEEECcCC-----CCCCC---hhhccCCCCCEEEecCCC-CCC--
Confidence 4567778888887763 33322 1 367777888888762 33332 256677778888887775 433
Q ss_pred HHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEe
Q 044164 377 LIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVD 447 (714)
Q Consensus 377 l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~ 447 (714)
+.. ...+++|+.|+|++|. +++. .. ...+ ++|+.|+|++|.... . .+ ...+++|+.|+|+
T Consensus 124 l~~-l~~l~~L~~L~Ls~N~-l~~l--~~-l~~l-~~L~~L~Ls~N~l~~-~--~~--l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 124 ING-LVHLPQLESLYLGNNK-ITDI--TV-LSRL-TKLDTLSLEDNQISD-I--VP--LAGLTKLQNLYLS 183 (605)
T ss_dssp CGG-GGGCTTCSEEECCSSC-CCCC--GG-GGSC-TTCSEEECCSSCCCC-C--GG--GTTCTTCCEEECC
T ss_pred Ccc-ccCCCccCEEECCCCc-cCCc--hh-hccc-CCCCEEECcCCcCCC-c--hh--hccCCCCCEEECc
Confidence 222 2347778888887776 4442 22 2334 778888887776431 1 11 3446777777774
No 109
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.45 E-value=7.8e-08 Score=94.08 Aligned_cols=110 Identities=16% Similarity=0.226 Sum_probs=73.9
Q ss_pred ccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccccc
Q 044164 514 TWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFA 593 (714)
Q Consensus 514 ~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~ 593 (714)
.+++|++|.+ .+..++.++...+.++++|+.|.++ ++.... .|. ..+..+++|+.++|+.|.+++..
T Consensus 74 ~l~~L~~L~L---s~n~l~~~~~~~~~~l~~L~~L~L~--~N~l~~-~~~-------~~~~~l~~L~~L~l~~N~l~~~~ 140 (208)
T 2o6s_A 74 KLTSLTYLNL---STNQLQSLPNGVFDKLTQLKELALN--TNQLQS-LPD-------GVFDKLTQLKDLRLYQNQLKSVP 140 (208)
T ss_dssp TCTTCCEEEC---CSSCCCCCCTTTTTTCTTCCEEECC--SSCCCC-CCT-------TTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCCcCEEEC---CCCcCCccCHhHhcCccCCCEEEcC--CCcCcc-cCH-------hHhccCCcCCEEECCCCccceeC
Confidence 4566777776 3445566666657889999999995 332222 222 14678899999999999888654
Q ss_pred ccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeec-----cchhHHHHHH
Q 044164 594 LTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIH-----GTANEHFMSF 667 (714)
Q Consensus 594 ~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~~~~ 667 (714)
+..+..++.++.+++.+ |.+.+. |++|+.|.++ |.+|+.++.+
T Consensus 141 ---~~~~~~l~~L~~L~l~~-------------------N~~~~~---------~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 141 ---DGVFDRLTSLQYIWLHD-------------------NPWDCT---------CPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp ---TTTTTTCTTCCEEECCS-------------------CCBCCC---------TTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred ---HHHhccCCCccEEEecC-------------------CCeecC---------CCCHHHHHHHHHhCCceeeccCccc
Confidence 44466777777777777 766554 4466666655 7888766644
No 110
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.41 E-value=1.2e-07 Score=87.47 Aligned_cols=132 Identities=20% Similarity=0.251 Sum_probs=91.3
Q ss_pred CCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHH
Q 044164 300 LPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIA 379 (714)
Q Consensus 300 ~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~ 379 (714)
.++|+.|++++|. +++.. +......+++|++|++.++ .++.. ..++.+++|+.|++++|. +++. +..
T Consensus 16 ~~~l~~L~l~~n~-l~~~~--~~~~~~~l~~L~~L~l~~n-----~l~~~---~~~~~l~~L~~L~Ls~n~-i~~~-~~~ 82 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGK--LEGLTDEFEELEFLSTINV-----GLTSI---ANLPKLNKLKKLELSDNR-VSGG-LEV 82 (149)
T ss_dssp GGGCSEEECTTCB-CBTTB--CCSCCTTCTTCCEEECTTS-----CCCCC---TTCCCCTTCCEEECCSSC-CCSC-THH
T ss_pred CccCeEEEccCCc-CChhH--HHHHHhhcCCCcEEECcCC-----CCCCc---hhhhcCCCCCEEECCCCc-ccch-HHH
Confidence 4779999999984 43111 2223477899999999883 33332 467789999999999986 5442 445
Q ss_pred HHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEE
Q 044164 380 ISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHV 446 (714)
Q Consensus 380 l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l 446 (714)
....+++|++|++++|. +++.........+ ++|++|++++|...............+++|+.|++
T Consensus 83 ~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNK-IKDLSTIEPLKKL-ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp HHHHCTTCCEEECTTSC-CCSHHHHGGGGGC-TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred HhhhCCCCCEEECCCCc-CCChHHHHHHhhC-CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 55568999999999998 7765433344556 99999999998643111111234556789999875
No 111
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.40 E-value=1.4e-07 Score=70.31 Aligned_cols=38 Identities=29% Similarity=0.547 Sum_probs=33.4
Q ss_pred CCCcCCCcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhHh
Q 044164 10 PNFHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLER 49 (714)
Q Consensus 10 ~~~~~~LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~~ 49 (714)
..+.+ ||+|++.+||+|| +.+++.+++.|||+|+.+..
T Consensus 7 ~~~~~-LP~eil~~I~~~L-~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 7 VSWDS-LPDELLLGIFSCL-CLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp --CCS-SCHHHHHHHHTTS-CGGGHHHHHTTCHHHHHHHT
T ss_pred CCHHH-CCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhC
Confidence 34568 9999999999999 79999999999999999764
No 112
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.32 E-value=1.1e-07 Score=89.70 Aligned_cols=136 Identities=19% Similarity=0.183 Sum_probs=92.7
Q ss_pred CCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHH
Q 044164 300 LPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIA 379 (714)
Q Consensus 300 ~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~ 379 (714)
.++|++|++++|. +++.. +......+++|++|++.++ .++.. ..+..+++|+.|++++|. +++. +..
T Consensus 23 ~~~L~~L~l~~n~-l~~~~--i~~~~~~l~~L~~L~l~~n-----~l~~~---~~~~~l~~L~~L~Ls~N~-l~~~-~~~ 89 (168)
T 2ell_A 23 PAAVRELVLDNCK-SNDGK--IEGLTAEFVNLEFLSLINV-----GLISV---SNLPKLPKLKKLELSENR-IFGG-LDM 89 (168)
T ss_dssp TTSCSEEECCSCB-CBTTB--CSSCCGGGGGCCEEEEESS-----CCCCC---SSCCCCSSCCEEEEESCC-CCSC-CCH
T ss_pred cccCCEEECCCCC-CChhh--HHHHHHhCCCCCEEeCcCC-----CCCCh---hhhccCCCCCEEECcCCc-CchH-HHH
Confidence 4789999999985 43111 2223467899999999983 23332 467789999999999986 5442 345
Q ss_pred HHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEE-eccc
Q 044164 380 ISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHV-DCVW 450 (714)
Q Consensus 380 l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l-~C~~ 450 (714)
+...+++|+.|++++|. +++.........+ ++|++|++++|+..............+++|+.|++ +|..
T Consensus 90 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNK-LKDISTLEPLKKL-ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp HHHHCTTCCEEECBSSS-CCSSGGGGGGSSC-SCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred HHhhCCCCCEEeccCCc-cCcchhHHHHhcC-CCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 55568999999999997 6663221222344 89999999998754212111234566899999999 5554
No 113
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.31 E-value=1.2e-08 Score=108.79 Aligned_cols=205 Identities=11% Similarity=0.090 Sum_probs=109.5
Q ss_pred hcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHH
Q 044164 298 ESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSAL 377 (714)
Q Consensus 298 ~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l 377 (714)
.++++|++|+|+++.-.+.. .......+++|+++.+.+ ++.++... ...++.+++|+.|+++++. ++...-
T Consensus 51 ~~l~~L~~L~Ls~N~i~~~i---~~~~f~~L~~l~~~l~~~----~N~l~~l~-~~~f~~l~~L~~L~l~~n~-l~~~~~ 121 (350)
T 4ay9_X 51 SGFGDLEKIEISQNDVLEVI---EADVFSNLPKLHEIRIEK----ANNLLYIN-PEAFQNLPNLQYLLISNTG-IKHLPD 121 (350)
T ss_dssp TTCTTCCEEEEECCTTCCEE---CTTSBCSCTTCCEEEEEE----ETTCCEEC-TTSBCCCTTCCEEEEEEEC-CSSCCC
T ss_pred cCCCCCCEEECcCCCCCCcc---ChhHhhcchhhhhhhccc----CCcccccC-chhhhhccccccccccccc-cccCCc
Confidence 46788899999887532211 011235677777665544 24444321 2356778888888888764 321100
Q ss_pred HHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEE-eccccccccc
Q 044164 378 IAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHV-DCVWESVEQY 456 (714)
Q Consensus 378 ~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l-~C~~~~~~~~ 456 (714)
.. .....++..|++.++..++.-....+.... ..++.|+++++... . ++.-....++|++|.+ +++.++....
T Consensus 122 ~~-~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~-~~l~~L~L~~N~i~-~---i~~~~f~~~~L~~l~l~~~n~l~~i~~ 195 (350)
T 4ay9_X 122 VH-KIHSLQKVLLDIQDNINIHTIERNSFVGLS-FESVILWLNKNGIQ-E---IHNSAFNGTQLDELNLSDNNNLEELPN 195 (350)
T ss_dssp CT-TCCBSSCEEEEEESCTTCCEECTTSSTTSB-SSCEEEECCSSCCC-E---ECTTSSTTEEEEEEECTTCTTCCCCCT
T ss_pred hh-hcccchhhhhhhccccccccccccchhhcc-hhhhhhcccccccc-C---CChhhccccchhHHhhccCCcccCCCH
Confidence 00 112355677777776655432211222222 46777888776532 1 1111112345667776 4555433322
Q ss_pred chhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccc
Q 044164 457 SQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRL 536 (714)
Q Consensus 457 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~ 536 (714)
..+ ..+++|+.|++ .+..++.+|.
T Consensus 196 ~~f-----------------------------------------------------~~l~~L~~LdL---s~N~l~~lp~ 219 (350)
T 4ay9_X 196 DVF-----------------------------------------------------HGASGPVILDI---SRTRIHSLPS 219 (350)
T ss_dssp TTT-----------------------------------------------------TTEECCSEEEC---TTSCCCCCCS
T ss_pred HHh-----------------------------------------------------ccCcccchhhc---CCCCcCccCh
Confidence 222 45678888887 5566788877
Q ss_pred cCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccC
Q 044164 537 AGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCG 587 (714)
Q Consensus 537 ~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~ 587 (714)
.++.+ |+.|++....+....| .+..+++|+.+++..+
T Consensus 220 ~~~~~---L~~L~~l~~~~l~~lP-----------~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 220 YGLEN---LKKLRARSTYNLKKLP-----------TLEKLVALMEASLTYP 256 (350)
T ss_dssp SSCTT---CCEEECTTCTTCCCCC-----------CTTTCCSCCEEECSCH
T ss_pred hhhcc---chHhhhccCCCcCcCC-----------CchhCcChhhCcCCCC
Confidence 66554 4445442112222222 4567778888877643
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.30 E-value=6.6e-07 Score=88.39 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=82.6
Q ss_pred cccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccc
Q 044164 513 DTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGF 592 (714)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~ 592 (714)
..+++|++|.+ .+..++.++...+.++++|++|.++ +|......|. .+..+++|+.++|+.|.+.+.
T Consensus 54 ~~l~~L~~L~L---~~N~i~~i~~~~~~~l~~L~~L~Ls--~N~l~~~~~~--------~~~~l~~L~~L~Ls~N~l~~~ 120 (220)
T 2v70_A 54 KKLPQLRKINF---SNNKITDIEEGAFEGASGVNEILLT--SNRLENVQHK--------MFKGLESLKTLMLRSNRITCV 120 (220)
T ss_dssp GGCTTCCEEEC---CSSCCCEECTTTTTTCTTCCEEECC--SSCCCCCCGG--------GGTTCSSCCEEECTTSCCCCB
T ss_pred ccCCCCCEEEC---CCCcCCEECHHHhCCCCCCCEEECC--CCccCccCHh--------HhcCCcCCCEEECCCCcCCeE
Confidence 35678888887 4556677776668889999999986 4433332222 577888999999999988876
Q ss_pred cccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeeccc
Q 044164 593 ALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGT 659 (714)
Q Consensus 593 ~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 659 (714)
. |..+..++.++.++|.+ |++++..|.+ +.++++|++|+++|.
T Consensus 121 ~---~~~~~~l~~L~~L~L~~-------------------N~l~~~~~~~--~~~l~~L~~L~L~~N 163 (220)
T 2v70_A 121 G---NDSFIGLSSVRLLSLYD-------------------NQITTVAPGA--FDTLHSLSTLNLLAN 163 (220)
T ss_dssp C---TTSSTTCTTCSEEECTT-------------------SCCCCBCTTT--TTTCTTCCEEECCSC
T ss_pred C---HhHcCCCccCCEEECCC-------------------CcCCEECHHH--hcCCCCCCEEEecCc
Confidence 6 77777888888888877 8888777777 788888999988843
No 115
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.27 E-value=1.6e-06 Score=91.24 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=41.4
Q ss_pred cccccceeeehhcccccccccccCCCCCCCcc-eEEEEEeccccCCCCcccccccccccccCCccccccccccCcccccc
Q 044164 515 WTKLKYLSLWIAVGELLNPIRLAGLENCPILE-EIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFA 593 (714)
Q Consensus 515 ~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~-~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~ 593 (714)
+.+|+.+.+ . ..++.++...+.+|++|+ +|.+. +- ....+-..+.+|++|+.++|+.|.+...-
T Consensus 249 ~~~L~~l~l---~-~ni~~I~~~aF~~~~~L~~~l~l~---~~--------l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 249 KKYLLKIKL---P-HNLKTIGQRVFSNCGRLAGTLELP---AS--------VTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp CTTCCEEEC---C-TTCCEECTTTTTTCTTCCEEEEEC---TT--------CCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred CCCCCEEEC---C-cccceehHHHhhCChhccEEEEEc---cc--------ceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 455555554 1 125555555567777777 77773 21 11122235667777777777666554433
Q ss_pred ccCCCCCccchhhHHhh
Q 044164 594 LTAPRGYADLSLWERFY 610 (714)
Q Consensus 594 ~~~p~~~~~l~~~~~~~ 610 (714)
+..|.++++++.+|
T Consensus 314 ---~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 314 ---DELFGNGVPSKLIY 327 (329)
T ss_dssp ---TTTTCTTCCCCEEE
T ss_pred ---hhhhcCCcchhhhc
Confidence 33455555444443
No 116
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.25 E-value=7.1e-07 Score=82.08 Aligned_cols=12 Identities=8% Similarity=0.113 Sum_probs=6.7
Q ss_pred CCCceEEecCcc
Q 044164 161 PSLSSIDLSHFY 172 (714)
Q Consensus 161 ~~L~~L~Ls~~~ 172 (714)
++|+.|+++++.
T Consensus 17 ~~l~~L~l~~n~ 28 (149)
T 2je0_A 17 SDVKELVLDNSR 28 (149)
T ss_dssp GGCSEEECTTCB
T ss_pred ccCeEEEccCCc
Confidence 445555555554
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.25 E-value=8.9e-07 Score=87.48 Aligned_cols=109 Identities=11% Similarity=0.191 Sum_probs=70.3
Q ss_pred ccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccccc
Q 044164 514 TWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFA 593 (714)
Q Consensus 514 ~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~ 593 (714)
.+++|+.|.+ .+..++.+....+.++++|+.|.++ +|... ..|. ..+.++++|+.++|+.|.+.+..
T Consensus 54 ~l~~L~~L~L---s~N~i~~~~~~~~~~l~~L~~L~Ls--~N~l~-~l~~-------~~f~~l~~L~~L~L~~N~l~~~~ 120 (220)
T 2v9t_B 54 PYKKLRRIDL---SNNQISELAPDAFQGLRSLNSLVLY--GNKIT-ELPK-------SLFEGLFSLQLLLLNANKINCLR 120 (220)
T ss_dssp TCTTCCEEEC---CSSCCCEECTTTTTTCSSCCEEECC--SSCCC-CCCT-------TTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCCCCCEEEC---CCCcCCCcCHHHhhCCcCCCEEECC--CCcCC-ccCH-------hHccCCCCCCEEECCCCCCCEeC
Confidence 4566777776 4445566655567777888888775 33222 2222 13567777888888888777655
Q ss_pred ccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeeccc
Q 044164 594 LTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGT 659 (714)
Q Consensus 594 ~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 659 (714)
|..+..++.++.|+|.+ |+++.-.|.+ +.++++|++|+++|.
T Consensus 121 ---~~~~~~l~~L~~L~L~~-------------------N~l~~~~~~~--~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 121 ---VDAFQDLHNLNLLSLYD-------------------NKLQTIAKGT--FSPLRAIQTMHLAQN 162 (220)
T ss_dssp ---TTTTTTCTTCCEEECCS-------------------SCCSCCCTTT--TTTCTTCCEEECCSS
T ss_pred ---HHHcCCCCCCCEEECCC-------------------CcCCEECHHH--HhCCCCCCEEEeCCC
Confidence 66666777777777766 7766555544 666777777777743
No 118
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.25 E-value=7.8e-06 Score=78.28 Aligned_cols=126 Identities=16% Similarity=0.199 Sum_probs=93.5
Q ss_pred hHHHHHHhccCCCccEEEeccccCccccCCCcc---hHHHhcCCcCcceeeeecCCCCCHHHHHHHHhc---CCCccEEE
Q 044164 318 WPALELLNSKCPRLKSLKLGQVHGICREIDSSM---PAAGVALWKGLESLSIKNSADLTDSALIAISLG---CSNLTKFE 391 (714)
Q Consensus 318 ~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~---~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~---~~~L~~L~ 391 (714)
...+..+...+++|++|+|+++ ..+++.+ ....+..+++|++|+|++|. |++.+...++.. .++|++|+
T Consensus 25 ~~~l~~~l~~~~~L~~L~L~~n----~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~ 99 (185)
T 1io0_A 25 EETLKRIQNNDPDLEEVNLNNI----MNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLN 99 (185)
T ss_dssp HHHHHHHHTTCTTCCEEECTTC----TTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHHHhcCCCCCEEEecCC----CCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEE
Confidence 3346677788999999999883 2455543 12345678999999999987 999988776543 58899999
Q ss_pred EeCCCCCCHHHHHHHHHHc--CCCeeEEEe--eCCCCCCchhHHHHHH---hcCCCCCEEEEecccc
Q 044164 392 VQGCNKITKMGMQIFARVL--EKTLVDVRI--SSCKYLNTVCSLQALE---PIRDRIQRLHVDCVWE 451 (714)
Q Consensus 392 L~~c~~lt~~~l~~l~~~~--~~~L~~L~L--~~C~~l~~~~~l~~l~---~~~~~L~~L~l~C~~~ 451 (714)
|++|. |++.|...++..+ .++|++|++ ++|. + ++.+...+. ...++|++|+++.+.+
T Consensus 100 L~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i-~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 100 VESNF-ISGSGILALVEALQSNTSLIELRIDNQSQP-L-GNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp CCSSC-CCHHHHHHHHHGGGGCSSCCEEECCCCSSC-C-CHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CcCCc-CCHHHHHHHHHHHHhCCCceEEEecCCCCC-C-CHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 99998 9999999888754 268999999 6665 4 354544433 4468999999954443
No 119
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.24 E-value=1.2e-06 Score=98.97 Aligned_cols=189 Identities=14% Similarity=0.130 Sum_probs=123.0
Q ss_pred CCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHH
Q 044164 300 LPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIA 379 (714)
Q Consensus 300 ~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~ 379 (714)
+.+|+.|+++++. ++.-. . .-.++|++|++++ +.++.. . ..+++|+.|++++|. |+. +..
T Consensus 58 ~~~L~~L~Ls~n~-L~~lp---~---~l~~~L~~L~Ls~-----N~l~~i---p--~~l~~L~~L~Ls~N~-l~~--ip~ 117 (571)
T 3cvr_A 58 INQFSELQLNRLN-LSSLP---D---NLPPQITVLEITQ-----NALISL---P--ELPASLEYLDACDNR-LST--LPE 117 (571)
T ss_dssp HTTCSEEECCSSC-CSCCC---S---CCCTTCSEEECCS-----SCCSCC---C--CCCTTCCEEECCSSC-CSC--CCC
T ss_pred cCCccEEEeCCCC-CCccC---H---hHcCCCCEEECcC-----CCCccc---c--cccCCCCEEEccCCC-CCC--cch
Confidence 4589999999874 43211 1 1247899999988 344432 1 457899999999885 543 222
Q ss_pred HHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchh
Q 044164 380 ISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQD 459 (714)
Q Consensus 380 l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l 459 (714)
+ ..+|+.|++++|. ++. ++. .+ ++|+.|++++|... . ++. .+++|+.|+++.+.++.. +. +
T Consensus 118 l---~~~L~~L~Ls~N~-l~~--lp~---~l-~~L~~L~Ls~N~l~-~---lp~---~l~~L~~L~Ls~N~L~~l-p~-l 178 (571)
T 3cvr_A 118 L---PASLKHLDVDNNQ-LTM--LPE---LP-ALLEYINADNNQLT-M---LPE---LPTSLEVLSVRNNQLTFL-PE-L 178 (571)
T ss_dssp C---CTTCCEEECCSSC-CSC--CCC---CC-TTCCEEECCSSCCS-C---CCC---CCTTCCEEECCSSCCSCC-CC-C
T ss_pred h---hcCCCEEECCCCc-CCC--CCC---cC-ccccEEeCCCCccC-c---CCC---cCCCcCEEECCCCCCCCc-ch-h
Confidence 1 2389999999887 554 322 34 89999999998743 1 121 467899999954443331 11 3
Q ss_pred hhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCC
Q 044164 460 HEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGL 539 (714)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l 539 (714)
. ++|++|++ .++.++.++. +
T Consensus 179 -----------------------------------------------------~--~~L~~L~L---s~N~L~~lp~--~ 198 (571)
T 3cvr_A 179 -----------------------------------------------------P--ESLEALDV---STNLLESLPA--V 198 (571)
T ss_dssp -----------------------------------------------------C--TTCCEEEC---CSSCCSSCCC--C
T ss_pred -----------------------------------------------------h--CCCCEEEC---cCCCCCchhh--H
Confidence 2 67888887 4556666665 4
Q ss_pred CCCCCc-------ceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccc
Q 044164 540 ENCPIL-------EEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADL 603 (714)
Q Consensus 540 ~~~~~L-------~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l 603 (714)
.. +| +.|.++ +| .-...|. .+..+++|+.++|+.|.++|.+ |..+..+
T Consensus 199 ~~--~L~~~~~~L~~L~Ls--~N-~l~~lp~--------~l~~l~~L~~L~L~~N~l~~~~---p~~l~~l 253 (571)
T 3cvr_A 199 PV--RNHHSEETEIFFRCR--EN-RITHIPE--------NILSLDPTCTIILEDNPLSSRI---RESLSQQ 253 (571)
T ss_dssp C----------CCEEEECC--SS-CCCCCCG--------GGGGSCTTEEEECCSSSCCHHH---HHHHHHH
T ss_pred HH--hhhcccccceEEecC--CC-cceecCH--------HHhcCCCCCEEEeeCCcCCCcC---HHHHHHh
Confidence 33 66 999985 33 3333555 5677999999999999999876 5544443
No 120
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.22 E-value=1.1e-06 Score=87.29 Aligned_cols=109 Identities=18% Similarity=0.255 Sum_probs=76.1
Q ss_pred cccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccc
Q 044164 513 DTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGF 592 (714)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~ 592 (714)
..+++|++|.+ .+..++.++...+.++++|+.|.++ +|.... .|. ..+..+++|+.++|+.|.+. .
T Consensus 61 ~~l~~L~~L~L---~~N~l~~i~~~~~~~l~~L~~L~Ls--~N~l~~-l~~-------~~~~~l~~L~~L~Ls~N~l~-~ 126 (229)
T 3e6j_A 61 DSLINLKELYL---GSNQLGALPVGVFDSLTQLTVLDLG--TNQLTV-LPS-------AVFDRLVHLKELFMCCNKLT-E 126 (229)
T ss_dssp TTCTTCCEEEC---CSSCCCCCCTTTTTTCTTCCEEECC--SSCCCC-CCT-------TTTTTCTTCCEEECCSSCCC-S
T ss_pred hCccCCcEEEC---CCCCCCCcChhhcccCCCcCEEECC--CCcCCc-cCh-------hHhCcchhhCeEeccCCccc-c
Confidence 45677888887 4555677776667888899999885 333222 222 14677888899999988877 2
Q ss_pred cccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeeccc
Q 044164 593 ALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGT 659 (714)
Q Consensus 593 ~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 659 (714)
+ |.++..++.++.|+|.+ |+++.-.+.+ +.++++|++|++.|.
T Consensus 127 l---p~~~~~l~~L~~L~L~~-------------------N~l~~~~~~~--~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 127 L---PRGIERLTHLTHLALDQ-------------------NQLKSIPHGA--FDRLSSLTHAYLFGN 169 (229)
T ss_dssp C---CTTGGGCTTCSEEECCS-------------------SCCCCCCTTT--TTTCTTCCEEECTTS
T ss_pred c---CcccccCCCCCEEECCC-------------------CcCCccCHHH--HhCCCCCCEEEeeCC
Confidence 3 77777777777777777 7777433333 777888999988854
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.19 E-value=9.8e-08 Score=101.53 Aligned_cols=86 Identities=14% Similarity=0.062 Sum_probs=46.4
Q ss_pred CcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHH
Q 044164 301 PLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAI 380 (714)
Q Consensus 301 p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l 380 (714)
+++++|+++++. ++.- .......+++|++|+|+++ .+....+...+..+++|+.+.+.++.+++... ...
T Consensus 30 ~~l~~L~Ls~N~-i~~i---~~~~f~~l~~L~~L~Ls~N-----~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~ 99 (350)
T 4ay9_X 30 RNAIELRFVLTK-LRVI---QKGAFSGFGDLEKIEISQN-----DVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEA 99 (350)
T ss_dssp TTCSEEEEESCC-CSEE---CTTSSTTCTTCCEEEEECC-----TTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTS
T ss_pred CCCCEEEccCCc-CCCc---CHHHHcCCCCCCEEECcCC-----CCCCccChhHhhcchhhhhhhcccCCcccccC-chh
Confidence 568888888753 3221 1112356788888888772 22221112345666777665555554443211 111
Q ss_pred HhcCCCccEEEEeCCC
Q 044164 381 SLGCSNLTKFEVQGCN 396 (714)
Q Consensus 381 ~~~~~~L~~L~L~~c~ 396 (714)
..++++|++|++++|.
T Consensus 100 f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 100 FQNLPNLQYLLISNTG 115 (350)
T ss_dssp BCCCTTCCEEEEEEEC
T ss_pred hhhccccccccccccc
Confidence 2346777777777665
No 122
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.19 E-value=4.2e-06 Score=87.98 Aligned_cols=126 Identities=12% Similarity=0.130 Sum_probs=77.8
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhh
Q 044164 384 CSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIR 463 (714)
Q Consensus 384 ~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~ 463 (714)
..+++.+.+.+. +.......+...| ++|+.|++.++... .........|++|+.|++.-. +...+....
T Consensus 201 ~~~~~~l~~~~~--l~~~~~~~l~~~~-~~L~~l~L~~n~i~---~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF---- 269 (329)
T 3sb4_A 201 PRDINFLTIEGK--LDNADFKLIRDYM-PNLVSLDISKTNAT---TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVF---- 269 (329)
T ss_dssp GGGCSEEEEEEC--CCHHHHHHHHHHC-TTCCEEECTTBCCC---EECTTTTTTCTTCCEEECCTT-CCEECTTTT----
T ss_pred ccccceEEEeee--ecHHHHHHHHHhc-CCCeEEECCCCCcc---eecHhhhhCCCCCCEEECCcc-cceehHHHh----
Confidence 456677777654 5566677776677 88888888875422 111122345788888888322 222222222
Q ss_pred ccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCcccccccccc-ceeeehhcccccccccccCCCCC
Q 044164 464 GESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLK-YLSLWIAVGELLNPIRLAGLENC 542 (714)
Q Consensus 464 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~l~~l~~~~l~~~ 542 (714)
..+.+|+ .+.+ .. .++.+....+.+|
T Consensus 270 -------------------------------------------------~~~~~L~~~l~l---~~-~l~~I~~~aF~~c 296 (329)
T 3sb4_A 270 -------------------------------------------------SNCGRLAGTLEL---PA-SVTAIEFGAFMGC 296 (329)
T ss_dssp -------------------------------------------------TTCTTCCEEEEE---CT-TCCEECTTTTTTC
T ss_pred -------------------------------------------------hCChhccEEEEE---cc-cceEEchhhhhCC
Confidence 3466777 7776 22 5677777778999
Q ss_pred CCcceEEEEEeccccCCCCcccccccccccccCCccccccc
Q 044164 543 PILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMH 583 (714)
Q Consensus 543 ~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~ 583 (714)
++|++|.+. ++- ....+-..+.+|++|+.+.
T Consensus 297 ~~L~~l~l~--~n~--------i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 297 DNLRYVLAT--GDK--------ITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTEEEEEEC--SSC--------CCEECTTTTCTTCCCCEEE
T ss_pred ccCCEEEeC--CCc--------cCccchhhhcCCcchhhhc
Confidence 999999984 221 1223334778898888764
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.18 E-value=1e-06 Score=86.95 Aligned_cols=37 Identities=14% Similarity=0.153 Sum_probs=18.4
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCC
Q 044164 385 SNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCK 423 (714)
Q Consensus 385 ~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~ 423 (714)
+.++.|+++++. ++..........+ ++|++|++++|.
T Consensus 32 ~~~~~L~L~~N~-l~~~~~~~~~~~l-~~L~~L~L~~N~ 68 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEATGIFKKL-PQLRKINFSNNK 68 (220)
T ss_dssp TTCSEEECCSSC-CCEECCCCCGGGC-TTCCEEECCSSC
T ss_pred CCCCEEEcCCCc-CCccCchhhhccC-CCCCEEECCCCc
Confidence 456677776665 4332111112233 666666666654
No 124
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.17 E-value=1.3e-06 Score=98.60 Aligned_cols=197 Identities=15% Similarity=0.118 Sum_probs=131.4
Q ss_pred CCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHH
Q 044164 328 CPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFA 407 (714)
Q Consensus 328 ~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~ 407 (714)
+.+|+.|++.++ .++..+ ..+ +++|+.|+++++. |+. +. ..+++|+.|++++|. ++. ++.
T Consensus 58 ~~~L~~L~Ls~n-----~L~~lp--~~l--~~~L~~L~Ls~N~-l~~--ip---~~l~~L~~L~Ls~N~-l~~--ip~-- 117 (571)
T 3cvr_A 58 INQFSELQLNRL-----NLSSLP--DNL--PPQITVLEITQNA-LIS--LP---ELPASLEYLDACDNR-LST--LPE-- 117 (571)
T ss_dssp HTTCSEEECCSS-----CCSCCC--SCC--CTTCSEEECCSSC-CSC--CC---CCCTTCCEEECCSSC-CSC--CCC--
T ss_pred cCCccEEEeCCC-----CCCccC--HhH--cCCCCEEECcCCC-Ccc--cc---cccCCCCEEEccCCC-CCC--cch--
Confidence 458999999883 333321 112 4789999999986 552 23 457999999999997 654 332
Q ss_pred HHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhhhc
Q 044164 408 RVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMM 487 (714)
Q Consensus 408 ~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (714)
+..+|++|++++|... . ++. .+++|+.|+++.+.++.. +
T Consensus 118 --l~~~L~~L~Ls~N~l~-~---lp~---~l~~L~~L~Ls~N~l~~l-p------------------------------- 156 (571)
T 3cvr_A 118 --LPASLKHLDVDNNQLT-M---LPE---LPALLEYINADNNQLTML-P------------------------------- 156 (571)
T ss_dssp --CCTTCCEEECCSSCCS-C---CCC---CCTTCCEEECCSSCCSCC-C-------------------------------
T ss_pred --hhcCCCEEECCCCcCC-C---CCC---cCccccEEeCCCCccCcC-C-------------------------------
Confidence 2159999999998754 1 222 578999999965543321 0
Q ss_pred ChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccc
Q 044164 488 SEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAE 567 (714)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~ 567 (714)
..+++|+.|.+ .++.++.++. +. ++|+.|.++ +|... ..|.
T Consensus 157 -------------------------~~l~~L~~L~L---s~N~L~~lp~--l~--~~L~~L~Ls--~N~L~-~lp~---- 197 (571)
T 3cvr_A 157 -------------------------ELPTSLEVLSV---RNNQLTFLPE--LP--ESLEALDVS--TNLLE-SLPA---- 197 (571)
T ss_dssp -------------------------CCCTTCCEEEC---CSSCCSCCCC--CC--TTCCEEECC--SSCCS-SCCC----
T ss_pred -------------------------CcCCCcCEEEC---CCCCCCCcch--hh--CCCCEEECc--CCCCC-chhh----
Confidence 12467888888 5556677765 54 899999996 33222 2322
Q ss_pred cccccc-cCCccccccccccCccccccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHH
Q 044164 568 FGLNSL-VNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLS 646 (714)
Q Consensus 568 ~~l~~l-~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 646 (714)
++- .| ...+.|+.++|+.|.++. + |.....++.++.++|.+ |.+++.+|.. ++
T Consensus 198 ~~~-~L~~~~~~L~~L~Ls~N~l~~-l---p~~l~~l~~L~~L~L~~-------------------N~l~~~~p~~--l~ 251 (571)
T 3cvr_A 198 VPV-RNHHSEETEIFFRCRENRITH-I---PENILSLDPTCTIILED-------------------NPLSSRIRES--LS 251 (571)
T ss_dssp CC---------CCEEEECCSSCCCC-C---CGGGGGSCTTEEEECCS-------------------SSCCHHHHHH--HH
T ss_pred HHH-hhhcccccceEEecCCCccee-c---CHHHhcCCCCCEEEeeC-------------------CcCCCcCHHH--HH
Confidence 111 11 223345999999999874 3 87778898899999988 9999888877 76
Q ss_pred Hhhh
Q 044164 647 QCRS 650 (714)
Q Consensus 647 ~~~~ 650 (714)
++.+
T Consensus 252 ~l~~ 255 (571)
T 3cvr_A 252 QQTA 255 (571)
T ss_dssp HHHH
T ss_pred Hhhc
Confidence 6655
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.17 E-value=1.1e-06 Score=93.71 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=16.5
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCC
Q 044164 385 SNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCK 423 (714)
Q Consensus 385 ~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~ 423 (714)
+.++.|+|+++. ++......+...+ ++|++|++++|.
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l-~~L~~L~L~~N~ 75 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRL-TNLHSLLLSHNH 75 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCC-TTCCEEECCSSC
T ss_pred CCCCEEECCCCC-CCccChhhhhhcc-cccCEEECCCCc
Confidence 346666666654 4332111111122 555555555543
No 126
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.11 E-value=1.9e-06 Score=85.05 Aligned_cols=135 Identities=13% Similarity=0.055 Sum_probs=74.9
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhc
Q 044164 385 SNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRG 464 (714)
Q Consensus 385 ~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~ 464 (714)
++|+.|+++++. ++......+ ..+ ++|++|++++|... . ..+.....+++|++|+++.+.++......+
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~~~-~~l-~~L~~L~Ls~N~i~--~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f----- 100 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPGAF-SPY-KKLRRIDLSNNQIS--E-LAPDAFQGLRSLNSLVLYGNKITELPKSLF----- 100 (220)
T ss_dssp TTCCEEECCSSC-CCEECTTSS-TTC-TTCCEEECCSSCCC--E-ECTTTTTTCSSCCEEECCSSCCCCCCTTTT-----
T ss_pred cCCCEEECCCCc-CCCcCHhHh-hCC-CCCCEEECCCCcCC--C-cCHHHhhCCcCCCEEECCCCcCCccCHhHc-----
Confidence 578888888876 443211111 233 77888888877543 1 111112345777777775444332222222
Q ss_pred cCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCCCCC
Q 044164 465 ESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPI 544 (714)
Q Consensus 465 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~ 544 (714)
..+++|+.|.+ .+..++.++...+.++++
T Consensus 101 ------------------------------------------------~~l~~L~~L~L---~~N~l~~~~~~~~~~l~~ 129 (220)
T 2v9t_B 101 ------------------------------------------------EGLFSLQLLLL---NANKINCLRVDAFQDLHN 129 (220)
T ss_dssp ------------------------------------------------TTCTTCCEEEC---CSSCCCCCCTTTTTTCTT
T ss_pred ------------------------------------------------cCCCCCCEEEC---CCCCCCEeCHHHcCCCCC
Confidence 33566777776 445556665556777777
Q ss_pred cceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccc
Q 044164 545 LEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 545 L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~ 591 (714)
|+.|.++ +|......+. .+..+++|+.++|+.|.+..
T Consensus 130 L~~L~L~--~N~l~~~~~~--------~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 130 LNLLSLY--DNKLQTIAKG--------TFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCEEECC--SSCCSCCCTT--------TTTTCTTCCEEECCSSCEEC
T ss_pred CCEEECC--CCcCCEECHH--------HHhCCCCCCEEEeCCCCcCC
Confidence 7777775 3332222122 45667777777777776554
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.09 E-value=4.7e-08 Score=110.81 Aligned_cols=108 Identities=14% Similarity=0.094 Sum_probs=76.5
Q ss_pred CCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhhhcChHH
Q 044164 412 KTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEE 491 (714)
Q Consensus 412 ~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 491 (714)
..|+.|++++|... . ++. ...+++|+.|+++.+.++ ..|..+
T Consensus 441 ~~L~~L~Ls~n~l~-~---lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~-------------------------------- 482 (567)
T 1dce_A 441 ADVRVLHLAHKDLT-V---LCH-LEQLLLVTHLDLSHNRLR-ALPPAL-------------------------------- 482 (567)
T ss_dssp TTCSEEECTTSCCS-S---CCC-GGGGTTCCEEECCSSCCC-CCCGGG--------------------------------
T ss_pred cCceEEEecCCCCC-C---CcC-ccccccCcEeecCccccc-ccchhh--------------------------------
Confidence 46888888887543 1 233 344678888888544444 334444
Q ss_pred HhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCC-ccccccccc
Q 044164 492 ASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQK-PVFMAEFGL 570 (714)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~-p~~~~~~~l 570 (714)
..+++|+.|++ .++.++.+| +++++++|+.|.++ +|...... |.
T Consensus 483 ---------------------~~l~~L~~L~L---s~N~l~~lp--~l~~l~~L~~L~Ls--~N~l~~~~~p~------- 527 (567)
T 1dce_A 483 ---------------------AALRCLEVLQA---SDNALENVD--GVANLPRLQELLLC--NNRLQQSAAIQ------- 527 (567)
T ss_dssp ---------------------GGCTTCCEEEC---CSSCCCCCG--GGTTCSSCCEEECC--SSCCCSSSTTG-------
T ss_pred ---------------------hcCCCCCEEEC---CCCCCCCCc--ccCCCCCCcEEECC--CCCCCCCCCcH-------
Confidence 56788888888 556667776 58899999999996 44444432 55
Q ss_pred ccccCCccccccccccCcccccc
Q 044164 571 NSLVNYPQLSRMHFDCGDAIGFA 593 (714)
Q Consensus 571 ~~l~~~~~L~~~~l~~~~~~~~~ 593 (714)
.+..+++|+.++|+.|.++|..
T Consensus 528 -~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 528 -PLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp -GGGGCTTCCEEECTTSGGGGSS
T ss_pred -HHhcCCCCCEEEecCCcCCCCc
Confidence 7889999999999999988753
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.05 E-value=4.1e-06 Score=83.19 Aligned_cols=36 Identities=19% Similarity=0.160 Sum_probs=19.7
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCC
Q 044164 385 SNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCK 423 (714)
Q Consensus 385 ~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~ 423 (714)
++|+.|++++|. ++.... .....+ ++|++|++++|.
T Consensus 40 ~~L~~L~Ls~n~-i~~~~~-~~~~~l-~~L~~L~L~~N~ 75 (229)
T 3e6j_A 40 TNAQILYLHDNQ-ITKLEP-GVFDSL-INLKELYLGSNQ 75 (229)
T ss_dssp TTCSEEECCSSC-CCCCCT-TTTTTC-TTCCEEECCSSC
T ss_pred CCCCEEEcCCCc-cCccCH-HHhhCc-cCCcEEECCCCC
Confidence 667777777766 433211 111233 666667666665
No 129
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.03 E-value=7.7e-07 Score=90.54 Aligned_cols=161 Identities=14% Similarity=0.141 Sum_probs=103.4
Q ss_pred cccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHHHHH
Q 044164 302 LLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALIAIS 381 (714)
Q Consensus 302 ~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~ 381 (714)
+++.++++.+ .+++.. . ...+++|++|++.++ .++.. ..+..+++|+.|++++|. +++.. . .
T Consensus 20 ~l~~l~l~~~-~i~~~~----~-~~~l~~L~~L~l~~n-----~i~~l---~~l~~l~~L~~L~L~~N~-i~~~~--~-l 81 (263)
T 1xeu_A 20 NAVKQNLGKQ-SVTDLV----S-QKELSGVQNFNGDNS-----NIQSL---AGMQFFTNLKELHLSHNQ-ISDLS--P-L 81 (263)
T ss_dssp HHHHHHHTCS-CTTSEE----C-HHHHTTCSEEECTTS-----CCCCC---TTGGGCTTCCEEECCSSC-CCCCG--G-G
T ss_pred HHHHHHhcCC-Cccccc----c-hhhcCcCcEEECcCC-----Ccccc---hHHhhCCCCCEEECCCCc-cCCCh--h-h
Confidence 4556666654 232221 1 256789999999883 34443 367788999999999885 55432 2 4
Q ss_pred hcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEecccccccccchhhh
Q 044164 382 LGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVDCVWESVEQYSQDHE 461 (714)
Q Consensus 382 ~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~C~~~~~~~~~~l~~ 461 (714)
..+++|+.|++++|. +++. ..+. .++|++|++++|... . ++. ...+++|+.|+++.+.++.. +.+
T Consensus 82 ~~l~~L~~L~L~~N~-l~~l--~~~~---~~~L~~L~L~~N~l~-~---~~~-l~~l~~L~~L~Ls~N~i~~~--~~l-- 146 (263)
T 1xeu_A 82 KDLTKLEELSVNRNR-LKNL--NGIP---SACLSRLFLDNNELR-D---TDS-LIHLKNLEILSIRNNKLKSI--VML-- 146 (263)
T ss_dssp TTCSSCCEEECCSSC-CSCC--TTCC---CSSCCEEECCSSCCS-B---SGG-GTTCTTCCEEECTTSCCCBC--GGG--
T ss_pred ccCCCCCEEECCCCc-cCCc--Cccc---cCcccEEEccCCccC-C---Chh-hcCcccccEEECCCCcCCCC--hHH--
Confidence 568999999999987 5441 1111 168999999998644 2 122 33568899998854443322 223
Q ss_pred hhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccccceeeehhcccccccccccCCCC
Q 044164 462 IRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKLKYLSLWIAVGELLNPIRLAGLEN 541 (714)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l~~l~~~~l~~ 541 (714)
..+++|+.|++ .+..++.+ ..+..
T Consensus 147 ---------------------------------------------------~~l~~L~~L~L---~~N~i~~~--~~l~~ 170 (263)
T 1xeu_A 147 ---------------------------------------------------GFLSKLEVLDL---HGNEITNT--GGLTR 170 (263)
T ss_dssp ---------------------------------------------------GGCTTCCEEEC---TTSCCCBC--TTSTT
T ss_pred ---------------------------------------------------ccCCCCCEEEC---CCCcCcch--HHhcc
Confidence 45677888877 44455555 34778
Q ss_pred CCCcceEEEE
Q 044164 542 CPILEEIQIK 551 (714)
Q Consensus 542 ~~~L~~L~i~ 551 (714)
+++|+.|.++
T Consensus 171 l~~L~~L~l~ 180 (263)
T 1xeu_A 171 LKKVNWIDLT 180 (263)
T ss_dssp CCCCCEEEEE
T ss_pred CCCCCEEeCC
Confidence 8888888886
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.02 E-value=1.2e-06 Score=102.34 Aligned_cols=93 Identities=17% Similarity=0.163 Sum_probs=65.7
Q ss_pred cccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccc
Q 044164 513 DTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGF 592 (714)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~ 592 (714)
..+++|++|+| .+..++.+|. .++++++|+.|.++ + +.-...|. .+..+++|+.++|+.|.+.|.
T Consensus 267 ~~l~~L~~L~L---s~N~l~~lp~-~~~~l~~L~~L~L~--~-N~l~~lp~--------~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 267 KNLSNLRVLDL---SHNRLTSLPA-ELGSCFQLKYFYFF--D-NMVTTLPW--------EFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp GGGTTCCEEEC---TTSCCSSCCS-SGGGGTTCSEEECC--S-SCCCCCCS--------STTSCTTCCCEECTTSCCCSH
T ss_pred hCCCCCCEEeC---cCCcCCccCh-hhcCCCCCCEEECC--C-CCCCccCh--------hhhcCCCccEEeCCCCccCCC
Confidence 56778888887 5555667754 48889999999985 3 33334555 578889999999999998887
Q ss_pred cccCCCCCccchh-hHHhhhccccccccccCCCCCCCCccccccccCcchh
Q 044164 593 ALTAPRGYADLSL-WERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAA 642 (714)
Q Consensus 593 ~~~~p~~~~~l~~-~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 642 (714)
. |..+..++. ...++|.+ |.++|.+|.+
T Consensus 332 ~---p~~~~~~~~~~~~l~l~~-------------------N~l~~~~p~~ 360 (727)
T 4b8c_D 332 F---LKILTEKSVTGLIFYLRD-------------------NRPEIPLPHE 360 (727)
T ss_dssp H---HHHHHHHHHHHHHHHHHH-------------------CCCCCCCCCC
T ss_pred C---hHHHhhcchhhhHHhhcc-------------------CcccCcCccc
Confidence 6 665555432 23467777 7888887764
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=97.94 E-value=6.1e-06 Score=77.42 Aligned_cols=84 Identities=14% Similarity=0.222 Sum_probs=48.0
Q ss_pred cccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccc
Q 044164 513 DTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGF 592 (714)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~ 592 (714)
..+++|+.|.+ .+..++.+ ..+..+++|+.|.++ ++......|. .+..+++|+.++|+.|.+++.
T Consensus 46 ~~l~~L~~L~l---~~n~l~~~--~~~~~l~~L~~L~Ls--~N~l~~~~~~--------~~~~l~~L~~L~Ls~N~l~~~ 110 (168)
T 2ell_A 46 AEFVNLEFLSL---INVGLISV--SNLPKLPKLKKLELS--ENRIFGGLDM--------LAEKLPNLTHLNLSGNKLKDI 110 (168)
T ss_dssp GGGGGCCEEEE---ESSCCCCC--SSCCCCSSCCEEEEE--SCCCCSCCCH--------HHHHCTTCCEEECBSSSCCSS
T ss_pred HhCCCCCEEeC---cCCCCCCh--hhhccCCCCCEEECc--CCcCchHHHH--------HHhhCCCCCEEeccCCccCcc
Confidence 34567777776 33334554 446777888888875 3333332333 344577788888887776653
Q ss_pred cccCCCCCccchhhHHhhhcc
Q 044164 593 ALTAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 593 ~~~~p~~~~~l~~~~~~~l~~ 613 (714)
. ++..+..++.++.+++.+
T Consensus 111 ~--~~~~l~~l~~L~~L~l~~ 129 (168)
T 2ell_A 111 S--TLEPLKKLECLKSLDLFN 129 (168)
T ss_dssp G--GGGGGSSCSCCCEEECCS
T ss_pred h--hHHHHhcCCCCCEEEeeC
Confidence 2 123344455555555555
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.88 E-value=4.4e-06 Score=80.48 Aligned_cols=105 Identities=16% Similarity=0.218 Sum_probs=70.3
Q ss_pred ccccceeeehhcccccccccccC-CCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccc
Q 044164 516 TKLKYLSLWIAVGELLNPIRLAG-LENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFAL 594 (714)
Q Consensus 516 ~~L~~L~l~~~~~~~l~~l~~~~-l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~ 594 (714)
.+++.|.+ .+..++.++..+ +.++++|+.|.++ ++......|. .+..+++|+.++|+.|.+++..
T Consensus 29 ~~l~~L~l---~~n~i~~~~~~~~~~~l~~L~~L~Ls--~N~l~~~~~~--------~~~~l~~L~~L~Ls~N~l~~~~- 94 (192)
T 1w8a_A 29 LHTTELLL---NDNELGRISSDGLFGRLPHLVKLELK--RNQLTGIEPN--------AFEGASHIQELQLGENKIKEIS- 94 (192)
T ss_dssp TTCSEEEC---CSCCCCSBCCSCSGGGCTTCCEEECC--SSCCCCBCTT--------TTTTCTTCCEEECCSCCCCEEC-
T ss_pred CCCCEEEC---CCCcCCccCCccccccCCCCCEEECC--CCCCCCcCHh--------HcCCcccCCEEECCCCcCCccC-
Confidence 36666666 444555555433 5677788888875 4433333344 5677778888888888777755
Q ss_pred cCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeec
Q 044164 595 TAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIH 657 (714)
Q Consensus 595 ~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 657 (714)
|..+..++.++.++|.+ |++++..|++ +.++++|++|+++
T Consensus 95 --~~~~~~l~~L~~L~L~~-------------------N~l~~~~~~~--~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 95 --NKMFLGLHQLKTLNLYD-------------------NQISCVMPGS--FEHLNSLTSLNLA 134 (192)
T ss_dssp --SSSSTTCTTCCEEECCS-------------------SCCCEECTTS--STTCTTCCEEECT
T ss_pred --HHHhcCCCCCCEEECCC-------------------CcCCeeCHHH--hhcCCCCCEEEeC
Confidence 55566677777777777 7777777766 6677777777777
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.85 E-value=2.9e-06 Score=80.43 Aligned_cols=132 Identities=16% Similarity=0.131 Sum_probs=87.2
Q ss_pred cCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHHHHH
Q 044164 299 SLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDSALI 378 (714)
Q Consensus 299 ~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~~l~ 378 (714)
.+++|++|++++|. ++.- ..+....++|+.|++++ +.++.. ..++.+++|+.|++++|. ++... .
T Consensus 17 ~~~~L~~L~l~~n~-l~~i----~~~~~~~~~L~~L~Ls~-----N~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~-~ 81 (176)
T 1a9n_A 17 NAVRDRELDLRGYK-IPVI----ENLGATLDQFDAIDFSD-----NEIRKL---DGFPLLRRLKTLLVNNNR-ICRIG-E 81 (176)
T ss_dssp CTTSCEEEECTTSC-CCSC----CCGGGGTTCCSEEECCS-----SCCCEE---CCCCCCSSCCEEECCSSC-CCEEC-S
T ss_pred CcCCceEEEeeCCC-Cchh----HHhhhcCCCCCEEECCC-----CCCCcc---cccccCCCCCEEECCCCc-ccccC-c
Confidence 46789999999874 4322 22334456999999988 334432 467788999999999986 55321 1
Q ss_pred HHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcCCCCCEEEEe
Q 044164 379 AISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIRDRIQRLHVD 447 (714)
Q Consensus 379 ~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~~~L~~L~l~ 447 (714)
.+...+++|+.|++++|. +++.........+ ++|+.|++++|+.......-......+++|+.|+++
T Consensus 82 ~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l-~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNS-LVELGDLDPLASL-KSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp CHHHHCTTCCEEECCSCC-CCCGGGGGGGGGC-TTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred chhhcCCCCCEEECCCCc-CCcchhhHhhhcC-CCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence 233458999999999997 6543211122345 899999999987541111112234567999999883
No 134
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.85 E-value=1.1e-05 Score=81.77 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=101.3
Q ss_pred cCcceeeeecCCCCCHHHHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCchhHHHHHHhcC
Q 044164 359 KGLESLSIKNSADLTDSALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNTVCSLQALEPIR 438 (714)
Q Consensus 359 ~~L~~L~L~~c~~ltd~~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~~~~l~~l~~~~ 438 (714)
.+++.+++.++. +++.. .+ ..+++|+.|++++|. +++. +.+ ..+ ++|++|++++|... +.. . ...+
T Consensus 19 ~~l~~l~l~~~~-i~~~~--~~-~~l~~L~~L~l~~n~-i~~l--~~l-~~l-~~L~~L~L~~N~i~-~~~---~-l~~l 84 (263)
T 1xeu_A 19 ANAVKQNLGKQS-VTDLV--SQ-KELSGVQNFNGDNSN-IQSL--AGM-QFF-TNLKELHLSHNQIS-DLS---P-LKDL 84 (263)
T ss_dssp HHHHHHHHTCSC-TTSEE--CH-HHHTTCSEEECTTSC-CCCC--TTG-GGC-TTCCEEECCSSCCC-CCG---G-GTTC
T ss_pred HHHHHHHhcCCC-ccccc--ch-hhcCcCcEEECcCCC-cccc--hHH-hhC-CCCCEEECCCCccC-CCh---h-hccC
Confidence 445556666543 43322 22 237899999999986 5542 222 344 89999999998644 221 1 4457
Q ss_pred CCCCEEEEecccccccccchhhhhhccCCCCccccCCccccchhHhhhcChHHHhHhhhcccccCCCCCCCccccccccc
Q 044164 439 DRIQRLHVDCVWESVEQYSQDHEIRGESSSSSHEACGFKDFQTEKRIMMSEEEASLKKKAKCCDGSGNGFSSCSDTWTKL 518 (714)
Q Consensus 439 ~~L~~L~l~C~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 518 (714)
++|+.|+++.+.++. .+.+ .. ++|
T Consensus 85 ~~L~~L~L~~N~l~~--l~~~-----------------------------------------------------~~-~~L 108 (263)
T 1xeu_A 85 TKLEELSVNRNRLKN--LNGI-----------------------------------------------------PS-ACL 108 (263)
T ss_dssp SSCCEEECCSSCCSC--CTTC-----------------------------------------------------CC-SSC
T ss_pred CCCCEEECCCCccCC--cCcc-----------------------------------------------------cc-Ccc
Confidence 899999995444322 1111 11 678
Q ss_pred cceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCC
Q 044164 519 KYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPR 598 (714)
Q Consensus 519 ~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~ 598 (714)
+.|.+ .+..++.++ ++.++++|+.|.++ +|.... . ..+..+++|+.++|+.|.+.+. .
T Consensus 109 ~~L~L---~~N~l~~~~--~l~~l~~L~~L~Ls--~N~i~~-~---------~~l~~l~~L~~L~L~~N~i~~~-----~ 166 (263)
T 1xeu_A 109 SRLFL---DNNELRDTD--SLIHLKNLEILSIR--NNKLKS-I---------VMLGFLSKLEVLDLHGNEITNT-----G 166 (263)
T ss_dssp CEEEC---CSSCCSBSG--GGTTCTTCCEEECT--TSCCCB-C---------GGGGGCTTCCEEECTTSCCCBC-----T
T ss_pred cEEEc---cCCccCCCh--hhcCcccccEEECC--CCcCCC-C---------hHHccCCCCCEEECCCCcCcch-----H
Confidence 88877 445556654 37788999999885 322211 1 2467888999999999988774 3
Q ss_pred CCccchhhHHhhhcc
Q 044164 599 GYADLSLWERFYLNG 613 (714)
Q Consensus 599 ~~~~l~~~~~~~l~~ 613 (714)
.+..++.++.+++.+
T Consensus 167 ~l~~l~~L~~L~l~~ 181 (263)
T 1xeu_A 167 GLTRLKKVNWIDLTG 181 (263)
T ss_dssp TSTTCCCCCEEEEEE
T ss_pred HhccCCCCCEEeCCC
Confidence 345566666666666
No 135
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.85 E-value=5.8e-06 Score=96.54 Aligned_cols=92 Identities=16% Similarity=0.136 Sum_probs=74.1
Q ss_pred cccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccc
Q 044164 513 DTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGF 592 (714)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~ 592 (714)
..+++|++|.| .+..++.+|. .+.++++|+.|.++ +|... ..|. .+..+++|+.|+|+.|.++ .
T Consensus 244 ~~l~~L~~L~L---s~N~l~~lp~-~~~~l~~L~~L~Ls--~N~l~-~lp~--------~~~~l~~L~~L~L~~N~l~-~ 307 (727)
T 4b8c_D 244 FKYDFLTRLYL---NGNSLTELPA-EIKNLSNLRVLDLS--HNRLT-SLPA--------ELGSCFQLKYFYFFDNMVT-T 307 (727)
T ss_dssp GGCCSCSCCBC---TTSCCSCCCG-GGGGGTTCCEEECT--TSCCS-SCCS--------SGGGGTTCSEEECCSSCCC-C
T ss_pred cCCCCCCEEEe---eCCcCcccCh-hhhCCCCCCEEeCc--CCcCC-ccCh--------hhcCCCCCCEEECCCCCCC-c
Confidence 45678888888 5556677764 48899999999996 44333 5566 6889999999999999875 3
Q ss_pred cccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchh
Q 044164 593 ALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAA 642 (714)
Q Consensus 593 ~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 642 (714)
+ |.+++.|++|+.|+|.+ |.+++.+|+.
T Consensus 308 l---p~~~~~l~~L~~L~L~~-------------------N~l~~~~p~~ 335 (727)
T 4b8c_D 308 L---PWEFGNLCNLQFLGVEG-------------------NPLEKQFLKI 335 (727)
T ss_dssp C---CSSTTSCTTCCCEECTT-------------------SCCCSHHHHH
T ss_pred c---ChhhhcCCCccEEeCCC-------------------CccCCCChHH
Confidence 4 88899999999999999 9999999877
No 136
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.84 E-value=1.4e-05 Score=76.89 Aligned_cols=97 Identities=14% Similarity=0.148 Sum_probs=76.3
Q ss_pred cccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccc
Q 044164 513 DTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGF 592 (714)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~ 592 (714)
..+++|++|++ .+..++.+....+.++++|++|+++ +|-.....|. .+..+++|+.++|+.|.++|.
T Consensus 51 ~~l~~L~~L~L---s~N~l~~~~~~~~~~l~~L~~L~Ls--~N~l~~~~~~--------~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 51 GRLPHLVKLEL---KRNQLTGIEPNAFEGASHIQELQLG--ENKIKEISNK--------MFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp GGCTTCCEEEC---CSSCCCCBCTTTTTTCTTCCEEECC--SCCCCEECSS--------SSTTCTTCCEEECCSSCCCEE
T ss_pred ccCCCCCEEEC---CCCCCCCcCHhHcCCcccCCEEECC--CCcCCccCHH--------HhcCCCCCCEEECCCCcCCee
Confidence 45788999988 5566777766778999999999996 4433332233 578899999999999999997
Q ss_pred cccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhh
Q 044164 593 ALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGL 644 (714)
Q Consensus 593 ~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~ 644 (714)
. |..+..++.++.+++.+ |.+++..+-..+
T Consensus 118 ~---~~~~~~l~~L~~L~L~~-------------------N~l~c~c~l~~~ 147 (192)
T 1w8a_A 118 M---PGSFEHLNSLTSLNLAS-------------------NPFNCNCHLAWF 147 (192)
T ss_dssp C---TTSSTTCTTCCEEECTT-------------------CCBCCSGGGHHH
T ss_pred C---HHHhhcCCCCCEEEeCC-------------------CCccCcCcchHH
Confidence 7 88888898888888888 999888775443
No 137
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.83 E-value=1.4e-05 Score=85.23 Aligned_cols=113 Identities=15% Similarity=0.183 Sum_probs=68.1
Q ss_pred cccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccc
Q 044164 513 DTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGF 592 (714)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~ 592 (714)
..+++|++|++ .+..++.++...+.++++|+.|.++ +|......|. .+..+++|+.++|+.|.+++.
T Consensus 85 ~~l~~L~~L~L---s~N~l~~~~~~~~~~l~~L~~L~L~--~N~i~~~~~~--------~~~~l~~L~~L~L~~N~l~~l 151 (361)
T 2xot_A 85 VPVPNLRYLDL---SSNHLHTLDEFLFSDLQALEVLLLY--NNHIVVVDRN--------AFEDMAQLQKLYLSQNQISRF 151 (361)
T ss_dssp TTCTTCCEEEC---CSSCCCEECTTTTTTCTTCCEEECC--SSCCCEECTT--------TTTTCTTCCEEECCSSCCCSC
T ss_pred cCCCCCCEEEC---CCCcCCcCCHHHhCCCcCCCEEECC--CCcccEECHH--------HhCCcccCCEEECCCCcCCee
Confidence 34677788777 4555677766667778888888885 3333322233 567788888888888887764
Q ss_pred cccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhh--hhheeeccc
Q 044164 593 ALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRS--LRKLFIHGT 659 (714)
Q Consensus 593 ~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--l~~l~~~~~ 659 (714)
...+-.+...++.++.|+|.+ |+++ .+|.. -++++++ |+.|+++|.
T Consensus 152 ~~~~~~~~~~l~~L~~L~L~~-------------------N~l~-~l~~~-~~~~l~~~~l~~l~l~~N 199 (361)
T 2xot_A 152 PVELIKDGNKLPKLMLLDLSS-------------------NKLK-KLPLT-DLQKLPAWVKNGLYLHNN 199 (361)
T ss_dssp CGGGTC----CTTCCEEECCS-------------------SCCC-CCCHH-HHHHSCHHHHTTEECCSS
T ss_pred CHHHhcCcccCCcCCEEECCC-------------------CCCC-ccCHH-HhhhccHhhcceEEecCC
Confidence 321111113455555566655 7776 44532 2555665 478888863
No 138
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.80 E-value=5.9e-06 Score=93.51 Aligned_cols=121 Identities=16% Similarity=0.194 Sum_probs=93.9
Q ss_pred ccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccccccc
Q 044164 516 TKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALT 595 (714)
Q Consensus 516 ~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~ 595 (714)
..|+.|++ .+..++.+|. ++++++|+.|.++ +|... ..|. .+..+++|+.++|+.|.++| +
T Consensus 441 ~~L~~L~L---s~n~l~~lp~--~~~l~~L~~L~Ls--~N~l~-~lp~--------~~~~l~~L~~L~Ls~N~l~~-l-- 501 (567)
T 1dce_A 441 ADVRVLHL---AHKDLTVLCH--LEQLLLVTHLDLS--HNRLR-ALPP--------ALAALRCLEVLQASDNALEN-V-- 501 (567)
T ss_dssp TTCSEEEC---TTSCCSSCCC--GGGGTTCCEEECC--SSCCC-CCCG--------GGGGCTTCCEEECCSSCCCC-C--
T ss_pred cCceEEEe---cCCCCCCCcC--ccccccCcEeecC--ccccc-ccch--------hhhcCCCCCEEECCCCCCCC-C--
Confidence 35778887 5566777763 8889999999996 43333 4566 78899999999999999988 3
Q ss_pred CCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCc-chhhhHHHhhhhhheeecc----chhHHHHHHHhc
Q 044164 596 APRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSL-PAAGLLSQCRSLRKLFIHG----TANEHFMSFFLK 670 (714)
Q Consensus 596 ~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~----~~~~~~~~~~~~ 670 (714)
| +++.|+.++.|+|.+ |++++.. |.+ ++++++|+.|+++| ..|+.+..++-.
T Consensus 502 -p-~l~~l~~L~~L~Ls~-------------------N~l~~~~~p~~--l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~ 558 (567)
T 1dce_A 502 -D-GVANLPRLQELLLCN-------------------NRLQQSAAIQP--LVSCPRLVLLNLQGNSLCQEEGIQERLAEM 558 (567)
T ss_dssp -G-GGTTCSSCCEEECCS-------------------SCCCSSSTTGG--GGGCTTCCEEECTTSGGGGSSSCTTHHHHH
T ss_pred -c-ccCCCCCCcEEECCC-------------------CCCCCCCCcHH--HhcCCCCCEEEecCCcCCCCccHHHHHHHH
Confidence 5 788888888888888 9998876 888 99999999999994 345555555555
Q ss_pred CCCccccc
Q 044164 671 IPTLRDVQ 678 (714)
Q Consensus 671 ~~~l~~~~ 678 (714)
+|+|+.+.
T Consensus 559 lp~L~~L~ 566 (567)
T 1dce_A 559 LPSVSSIL 566 (567)
T ss_dssp CTTCSEEE
T ss_pred CcccCccC
Confidence 68888764
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.74 E-value=5.3e-06 Score=80.26 Aligned_cols=38 Identities=13% Similarity=0.032 Sum_probs=18.2
Q ss_pred HHhcCCCCceEEecCccccCCChHHHHHhchhccCCCcEEEeccC
Q 044164 156 LFEHCPSLSSIDLSHFYCWTEDLPTAFELYPSIAASLSHLNLLVG 200 (714)
Q Consensus 156 ~~~~~~~L~~L~Ls~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~n 200 (714)
.+..+++|++|+++++.... ++ .+..++ +|++|++++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~----~L~~L~l~~n 80 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK--IS-SLSGME----NLRILSLGRN 80 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC--CC-CHHHHT----TCCEEEEEEE
T ss_pred HHhcCCCCCEEECCCCCCcc--cc-ccccCC----CCCEEECCCC
Confidence 34455566666665554222 22 233333 5666666553
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.74 E-value=2.5e-06 Score=82.65 Aligned_cols=131 Identities=21% Similarity=0.166 Sum_probs=88.4
Q ss_pred HHhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeecCCCCCHH
Q 044164 296 FFESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKNSADLTDS 375 (714)
Q Consensus 296 l~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~c~~ltd~ 375 (714)
.+..+++|++|+++++. ++.- . ....+++|+.|+++++ .++.. ...+..+++|+.|++++|. +++
T Consensus 43 ~~~~l~~L~~L~ls~n~-l~~l----~-~~~~l~~L~~L~l~~n-----~l~~l--~~~~~~~~~L~~L~L~~N~-l~~- 107 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN-IEKI----S-SLSGMENLRILSLGRN-----LIKKI--ENLDAVADTLEELWISYNQ-IAS- 107 (198)
T ss_dssp HHHHTTTCSEEECSEEE-ESCC----C-CHHHHTTCCEEEEEEE-----EECSC--SSHHHHHHHCSEEEEEEEE-CCC-
T ss_pred HHhcCCCCCEEECCCCC-Cccc----c-ccccCCCCCEEECCCC-----Ccccc--cchhhcCCcCCEEECcCCc-CCc-
Confidence 45678999999999874 4332 1 2356789999999883 33332 1345567899999999985 554
Q ss_pred HHHHHHhcCCCccEEEEeCCCCCCHHHHHHHHHHcCCCeeEEEeeCCCCCCc-------hhHHHHHHhcCCCCCEEE
Q 044164 376 ALIAISLGCSNLTKFEVQGCNKITKMGMQIFARVLEKTLVDVRISSCKYLNT-------VCSLQALEPIRDRIQRLH 445 (714)
Q Consensus 376 ~l~~l~~~~~~L~~L~L~~c~~lt~~~l~~l~~~~~~~L~~L~L~~C~~l~~-------~~~l~~l~~~~~~L~~L~ 445 (714)
+..+. .+++|+.|++++|. +++.+.......+ ++|++|++++|+.... ..........+++|+.|+
T Consensus 108 -l~~~~-~l~~L~~L~l~~N~-i~~~~~~~~l~~l-~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 108 -LSGIE-KLVNLRVLYMSNNK-ITNWGEIDKLAAL-DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp -HHHHH-HHHHSSEEEESEEE-CCCHHHHHHHTTT-TTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred -CCccc-cCCCCCEEECCCCc-CCchhHHHHHhcC-CCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 33443 47899999999998 6654332233345 9999999999874311 111122345679999886
No 141
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.71 E-value=0.00022 Score=68.30 Aligned_cols=121 Identities=13% Similarity=0.163 Sum_probs=66.7
Q ss_pred HHHHhccCCCccEEEeccccCccccCCCcc---hHHHhcCCcCcceeeeecCCCCCHHHHHHHHhc---CCCccEEEEeC
Q 044164 321 LELLNSKCPRLKSLKLGQVHGICREIDSSM---PAAGVALWKGLESLSIKNSADLTDSALIAISLG---CSNLTKFEVQG 394 (714)
Q Consensus 321 l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~---~l~~l~~~~~L~~L~L~~c~~ltd~~l~~l~~~---~~~L~~L~L~~ 394 (714)
+..+...-+.|++|+|.+ +..+++.+ ..+.+..-+.|+.|+|++|. |+|.+..+++.. -+.|+.|+|++
T Consensus 33 l~~ll~~n~~L~~L~L~~----nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~ 107 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINN----MKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVES 107 (197)
T ss_dssp HHHHHTTCSSCCEEECTT----CCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCS
T ss_pred HHHHHhcCCCccEEECCC----CCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCC
Confidence 444445555566666544 11333322 11233445567777777665 677766555532 36677777777
Q ss_pred CCCCCHHHHHHHHHHc--CCCeeEEEeeCCCC-CCchhHHHHHH---hcCCCCCEEEEe
Q 044164 395 CNKITKMGMQIFARVL--EKTLVDVRISSCKY-LNTVCSLQALE---PIRDRIQRLHVD 447 (714)
Q Consensus 395 c~~lt~~~l~~l~~~~--~~~L~~L~L~~C~~-l~~~~~l~~l~---~~~~~L~~L~l~ 447 (714)
+. |++.|...++..+ .++|++|+|++|.+ ..++.+..+++ ..-++|++|+++
T Consensus 108 N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 108 NF-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp SB-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred Cc-CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 66 7777777777654 24677777776543 11333322222 233667777763
No 142
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.70 E-value=0.0003 Score=67.38 Aligned_cols=128 Identities=14% Similarity=0.137 Sum_probs=93.9
Q ss_pred HHHHHHHHhcCCcccceecccccCcCCChH-HHHHHhccCCCccEEEeccccCccccCCCcc---hHHHhcCCcCcceee
Q 044164 290 PTALGDFFESLPLLEELVLDVGNNVRDTWP-ALELLNSKCPRLKSLKLGQVHGICREIDSSM---PAAGVALWKGLESLS 365 (714)
Q Consensus 290 ~~~l~~l~~~~p~L~~L~L~~c~~l~~~~~-~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~---~l~~l~~~~~L~~L~ 365 (714)
++.+..+...-+.|++|+++++..+.+.+. .+...+..-..|++|+|++ +.+++.+ ..+.+..-+.|++|+
T Consensus 30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-----n~igd~ga~alA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-----TAISDSEARGLIELIETSPSLRVLN 104 (197)
T ss_dssp HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-----SCCBHHHHTTHHHHHHHCSSCCEEE
T ss_pred HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-----CCCChHHHHHHHHHHhcCCccCeEe
Confidence 345777777788999999987656665542 2344456677899999998 4455543 123445678899999
Q ss_pred eecCCCCCHHHHHHHHhcC---CCccEEEEeCCC--CCCHHHHHHHHHHc--CCCeeEEEeeCCC
Q 044164 366 IKNSADLTDSALIAISLGC---SNLTKFEVQGCN--KITKMGMQIFARVL--EKTLVDVRISSCK 423 (714)
Q Consensus 366 L~~c~~ltd~~l~~l~~~~---~~L~~L~L~~c~--~lt~~~l~~l~~~~--~~~L~~L~L~~C~ 423 (714)
|+++. |++.+..+++..+ +.|+.|+|+++. .+++.+...++..+ .++|+.|+++.+.
T Consensus 105 L~~N~-Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 105 VESNF-LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CCSSB-CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred cCCCc-CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 99876 9999999988765 569999998763 48888766665422 2899999998654
No 143
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.65 E-value=6e-05 Score=71.23 Aligned_cols=95 Identities=16% Similarity=0.207 Sum_probs=66.7
Q ss_pred cccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccc
Q 044164 513 DTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGF 592 (714)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~ 592 (714)
..+++|++|.+ .+..++.++...+.++++|+.|.++ ++.... .|. ..+..+++|+.++|+.|.+++.
T Consensus 49 ~~l~~L~~L~l---~~n~l~~~~~~~~~~l~~L~~L~l~--~N~l~~-~~~-------~~~~~l~~L~~L~l~~N~l~~~ 115 (177)
T 2o6r_A 49 DKLTQLTKLSL---SQNQIQSLPDGVFDKLTKLTILYLH--ENKLQS-LPN-------GVFDKLTQLKELALDTNQLKSV 115 (177)
T ss_dssp TTCTTCSEEEC---CSSCCCCCCTTTTTTCTTCCEEECC--SSCCCC-CCT-------TTTTTCTTCCEEECCSSCCSCC
T ss_pred cCcccccEEEC---CCCcceEeChhHccCCCccCEEECC--CCCccc-cCH-------HHhhCCcccCEEECcCCcceEe
Confidence 34678888887 4556677776667889999999996 333332 222 1467889999999999988764
Q ss_pred cccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchh
Q 044164 593 ALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAA 642 (714)
Q Consensus 593 ~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~ 642 (714)
. |..+..++.++.+++.+ |.+++..|..
T Consensus 116 ~---~~~~~~l~~L~~L~l~~-------------------N~~~~~~~~l 143 (177)
T 2o6r_A 116 P---DGIFDRLTSLQKIWLHT-------------------NPWDCSCPRI 143 (177)
T ss_dssp C---TTTTTTCTTCCEEECCS-------------------SCBCCCHHHH
T ss_pred C---HHHhcCCcccCEEEecC-------------------CCeeccCccH
Confidence 3 33456677788888877 8888777644
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.62 E-value=3.4e-05 Score=72.95 Aligned_cols=107 Identities=14% Similarity=0.228 Sum_probs=79.0
Q ss_pred cccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccc
Q 044164 515 WTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFAL 594 (714)
Q Consensus 515 ~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~ 594 (714)
.++|+.|.+ .+..++.++...+.++++|+.|.+. ++... ..|. ..++.+++|+.++|+.|.+++..
T Consensus 27 ~~~l~~L~l---~~n~l~~~~~~~~~~l~~L~~L~l~--~n~l~-~~~~-------~~~~~l~~L~~L~l~~N~l~~~~- 92 (177)
T 2o6r_A 27 PSSATRLEL---ESNKLQSLPHGVFDKLTQLTKLSLS--QNQIQ-SLPD-------GVFDKLTKLTILYLHENKLQSLP- 92 (177)
T ss_dssp CTTCSEEEC---CSSCCCCCCTTTTTTCTTCSEEECC--SSCCC-CCCT-------TTTTTCTTCCEEECCSSCCCCCC-
T ss_pred CCCCcEEEe---CCCcccEeCHHHhcCcccccEEECC--CCcce-EeCh-------hHccCCCccCEEECCCCCccccC-
Confidence 468888887 4455677776667889999999995 33222 2232 14678999999999999988755
Q ss_pred cCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeecc
Q 044164 595 TAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHG 658 (714)
Q Consensus 595 ~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 658 (714)
|..+..++.++.+++.+ |+++ .+|.. .+.++++|++|+++|
T Consensus 93 --~~~~~~l~~L~~L~l~~-------------------N~l~-~~~~~-~~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 93 --NGVFDKLTQLKELALDT-------------------NQLK-SVPDG-IFDRLTSLQKIWLHT 133 (177)
T ss_dssp --TTTTTTCTTCCEEECCS-------------------SCCS-CCCTT-TTTTCTTCCEEECCS
T ss_pred --HHHhhCCcccCEEECcC-------------------Ccce-EeCHH-HhcCCcccCEEEecC
Confidence 55567788888888887 8887 45543 257789999999983
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.60 E-value=2.6e-05 Score=75.17 Aligned_cols=107 Identities=20% Similarity=0.208 Sum_probs=79.9
Q ss_pred cccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccc
Q 044164 515 WTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFAL 594 (714)
Q Consensus 515 ~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~ 594 (714)
.++|+.|.+ .+..++.++ ..+.++++|+.|.++ +|-.....+. .+.++++|+.++|+.|.+++..
T Consensus 30 ~~~l~~L~L---~~n~i~~ip-~~~~~l~~L~~L~Ls--~N~i~~i~~~--------~f~~l~~L~~L~Ls~N~l~~i~- 94 (193)
T 2wfh_A 30 PRDVTELYL---DGNQFTLVP-KELSNYKHLTLIDLS--NNRISTLSNQ--------SFSNMTQLLTLILSYNRLRCIP- 94 (193)
T ss_dssp CTTCCEEEC---CSSCCCSCC-GGGGGCTTCCEEECC--SSCCCCCCTT--------TTTTCTTCCEEECCSSCCCBCC-
T ss_pred CCCCCEEEC---CCCcCchhH-HHhhcccCCCEEECC--CCcCCEeCHh--------HccCCCCCCEEECCCCccCEeC-
Confidence 357888887 555667776 348889999999996 4433332233 6788999999999999988866
Q ss_pred cCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeeccc
Q 044164 595 TAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGT 659 (714)
Q Consensus 595 ~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 659 (714)
|..+..++.++.++|.+ |+++.-.+.+ +.++++|++|+++|.
T Consensus 95 --~~~f~~l~~L~~L~L~~-------------------N~l~~~~~~~--~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 95 --PRTFDGLKSLRLLSLHG-------------------NDISVVPEGA--FNDLSALSHLAIGAN 136 (193)
T ss_dssp --TTTTTTCTTCCEEECCS-------------------SCCCBCCTTT--TTTCTTCCEEECCSS
T ss_pred --HHHhCCCCCCCEEECCC-------------------CCCCeeChhh--hhcCccccEEEeCCC
Confidence 66788888888888888 8887433334 677899999999954
No 146
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=97.55 E-value=3e-05 Score=73.35 Aligned_cols=128 Identities=15% Similarity=0.153 Sum_probs=84.3
Q ss_pred cccccccceeeehhcccccccccccCCCCCC-CcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccc
Q 044164 513 DTWTKLKYLSLWIAVGELLNPIRLAGLENCP-ILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~-~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~ 591 (714)
..+.+|+.|.+ .+..++.++ ++..+. +|+.|.++ ++.... +..+..+++|+.++|+.|.+++
T Consensus 16 ~~~~~L~~L~l---~~n~l~~i~--~~~~~~~~L~~L~Ls--~N~l~~----------~~~l~~l~~L~~L~Ls~N~l~~ 78 (176)
T 1a9n_A 16 TNAVRDRELDL---RGYKIPVIE--NLGATLDQFDAIDFS--DNEIRK----------LDGFPLLRRLKTLLVNNNRICR 78 (176)
T ss_dssp ECTTSCEEEEC---TTSCCCSCC--CGGGGTTCCSEEECC--SSCCCE----------ECCCCCCSSCCEEECCSSCCCE
T ss_pred CCcCCceEEEe---eCCCCchhH--HhhhcCCCCCEEECC--CCCCCc----------ccccccCCCCCEEECCCCcccc
Confidence 34677888887 444555553 244444 99999985 322111 1367888999999999998876
Q ss_pred ccccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeecc----chhHHHHHH
Q 044164 592 FALTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHG----TANEHFMSF 667 (714)
Q Consensus 592 ~~~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~~~~ 667 (714)
.. |..+..++.++.+++.+ |++ .++|+..-++++++|+.|++.| .+|......
T Consensus 79 ~~---~~~~~~l~~L~~L~L~~-------------------N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~ 135 (176)
T 1a9n_A 79 IG---EGLDQALPDLTELILTN-------------------NSL-VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV 135 (176)
T ss_dssp EC---SCHHHHCTTCCEEECCS-------------------CCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHH
T ss_pred cC---cchhhcCCCCCEEECCC-------------------CcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHH
Confidence 32 33336677777777777 777 4677633477899999999984 445542223
Q ss_pred HhcCCCccccccc
Q 044164 668 FLKIPTLRDVQLR 680 (714)
Q Consensus 668 ~~~~~~l~~~~~~ 680 (714)
+-++++|+.+.++
T Consensus 136 ~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 136 IYKVPQVRVLDFQ 148 (176)
T ss_dssp HHHCTTCSEETTE
T ss_pred HHHCCccceeCCC
Confidence 3445888888764
No 147
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.41 E-value=5e-05 Score=77.26 Aligned_cols=37 Identities=24% Similarity=0.573 Sum_probs=33.3
Q ss_pred CCcCCCcHHHHHHHhhcCCChhhhH-HHHHHhHHHHHhHh
Q 044164 11 NFHDILPDAIMSNIFSLITDTRTRN-AMSLVCLKWCKLER 49 (714)
Q Consensus 11 ~~~~~LPdeiL~~Ifs~L~~~~dl~-~~slVCkrW~~~~~ 49 (714)
.+.. ||+|++.+||+|| +.+++. ++++|||+|+.++.
T Consensus 50 ~~~~-LP~ell~~Il~~L-p~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 50 YLAE-LPEPLLLRVLAEL-PATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CTTS-SCHHHHHHHHHTS-CHHHHHHTGGGTCHHHHHHHT
T ss_pred Chhh-CCHHHHHHHHHcC-CHHHHHHHHHHHhHHHHHHhc
Confidence 3447 9999999999999 889999 99999999999864
No 148
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.27 E-value=0.00029 Score=67.64 Aligned_cols=85 Identities=12% Similarity=0.174 Sum_probs=54.7
Q ss_pred cccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccc
Q 044164 513 DTWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGF 592 (714)
Q Consensus 513 ~~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~ 592 (714)
..+++|+.|++ .+..++.++...+.++++|++|+++ +|......|. .+..+++|+.++|+.|.+++.
T Consensus 51 ~~l~~L~~L~L---s~N~i~~i~~~~f~~l~~L~~L~Ls--~N~l~~i~~~--------~f~~l~~L~~L~L~~N~l~~~ 117 (193)
T 2wfh_A 51 SNYKHLTLIDL---SNNRISTLSNQSFSNMTQLLTLILS--YNRLRCIPPR--------TFDGLKSLRLLSLHGNDISVV 117 (193)
T ss_dssp GGCTTCCEEEC---CSSCCCCCCTTTTTTCTTCCEEECC--SSCCCBCCTT--------TTTTCTTCCEEECCSSCCCBC
T ss_pred hcccCCCEEEC---CCCcCCEeCHhHccCCCCCCEEECC--CCccCEeCHH--------HhCCCCCCCEEECCCCCCCee
Confidence 44667777777 4455666666667778888888875 3333332222 567778888888888877754
Q ss_pred cccCCCCCccchhhHHhhhcc
Q 044164 593 ALTAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 593 ~~~~p~~~~~l~~~~~~~l~~ 613 (714)
. +..+.+++.++.+++.+
T Consensus 118 ~---~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 118 P---EGAFNDLSALSHLAIGA 135 (193)
T ss_dssp C---TTTTTTCTTCCEEECCS
T ss_pred C---hhhhhcCccccEEEeCC
Confidence 3 33455666666666666
No 149
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.26 E-value=7.9e-05 Score=74.95 Aligned_cols=37 Identities=16% Similarity=0.258 Sum_probs=33.4
Q ss_pred CcCCCcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhHhc
Q 044164 12 FHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERS 50 (714)
Q Consensus 12 ~~~~LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~~~ 50 (714)
+++ ||+||+.+||+|| +++|++++++|||+|+.++..
T Consensus 5 l~~-LP~ei~l~IlsfL-~p~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 5 LTR-LPIDVQLYILSFL-SPHDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp HHH-SCHHHHHHHHHTS-CHHHHHHHHTTCHHHHHHHTC
T ss_pred hHh-CCHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcc
Confidence 346 9999999999999 899999999999999998643
No 150
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.23 E-value=0.00017 Score=67.67 Aligned_cols=96 Identities=15% Similarity=0.216 Sum_probs=66.2
Q ss_pred cccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhh
Q 044164 527 VGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLW 606 (714)
Q Consensus 527 ~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~ 606 (714)
.+..++.+|.. + .++|+.|+++ +|......|. .+.++++|+.++|+.|.+++.. |..+..++.+
T Consensus 17 s~n~l~~ip~~-~--~~~l~~L~L~--~N~i~~~~~~--------~~~~l~~L~~L~Ls~N~l~~l~---~~~f~~l~~L 80 (170)
T 3g39_A 17 SGKSLASVPTG-I--PTTTQVLYLY--DNQITKLEPG--------VFDRLTQLTRLDLDNNQLTVLP---AGVFDKLTQL 80 (170)
T ss_dssp TTSCCSSCCSC-C--CTTCSEEECC--SSCCCCCCTT--------TTTTCTTCSEEECCSSCCCCCC---TTTTTTCTTC
T ss_pred CCCCcCccCcc-C--CCCCcEEEcC--CCcCCccChh--------hhcCcccCCEEECCCCCcCccC---hhhccCCCCC
Confidence 34455666543 4 3788888886 4443333344 6778888888888888877644 4456678878
Q ss_pred HHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeeccc
Q 044164 607 ERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGT 659 (714)
Q Consensus 607 ~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 659 (714)
+.++|.+ |+++.-.|.+ ++++++|++|+++|.
T Consensus 81 ~~L~L~~-------------------N~l~~~~~~~--~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 81 TQLSLND-------------------NQLKSIPRGA--FDNLKSLTHIWLLNN 112 (170)
T ss_dssp CEEECCS-------------------SCCCCCCTTT--TTTCTTCCEEECCSS
T ss_pred CEEECCC-------------------CccCEeCHHH--hcCCCCCCEEEeCCC
Confidence 8888877 8877655545 777888888888865
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.14 E-value=0.00024 Score=66.97 Aligned_cols=96 Identities=10% Similarity=0.165 Sum_probs=63.3
Q ss_pred cccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhh
Q 044164 527 VGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLW 606 (714)
Q Consensus 527 ~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~ 606 (714)
.+..++.+|.. + .++|+.|.++ +|......|. .+.++++|+.++|+.|.+++.. |..+..++++
T Consensus 20 ~~n~l~~iP~~-~--~~~L~~L~Ls--~N~l~~~~~~--------~~~~l~~L~~L~Ls~N~l~~i~---~~~~~~l~~L 83 (174)
T 2r9u_A 20 QNIRLASVPAG-I--PTDKQRLWLN--NNQITKLEPG--------VFDHLVNLQQLYFNSNKLTAIP---TGVFDKLTQL 83 (174)
T ss_dssp CSSCCSSCCSC-C--CTTCSEEECC--SSCCCCCCTT--------TTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTC
T ss_pred CCCCCCccCCC-c--CCCCcEEEeC--CCCccccCHH--------HhcCCcCCCEEECCCCCCCccC---hhHhCCcchh
Confidence 33445666543 4 3788888885 4433333344 6778888888888888877743 3345677777
Q ss_pred HHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeeccc
Q 044164 607 ERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGT 659 (714)
Q Consensus 607 ~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 659 (714)
+.|+|.+ |+++.-.|.+ ++++++|++|+++|.
T Consensus 84 ~~L~L~~-------------------N~l~~l~~~~--~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 84 TQLDLND-------------------NHLKSIPRGA--FDNLKSLTHIYLYNN 115 (174)
T ss_dssp CEEECCS-------------------SCCCCCCTTT--TTTCTTCSEEECCSS
T ss_pred hEEECCC-------------------CccceeCHHH--hccccCCCEEEeCCC
Confidence 7777777 7777443333 677888888888854
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.80 E-value=0.00035 Score=73.54 Aligned_cols=92 Identities=18% Similarity=0.149 Sum_probs=60.9
Q ss_pred ccccccccCCCCCCCcceEEEEEec-cccCCCCcccccccccccccCCccccccccccCccccccccCCCCCccchhhHH
Q 044164 530 LLNPIRLAGLENCPILEEIQIKVVG-DCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFALTAPRGYADLSLWER 608 (714)
Q Consensus 530 ~l~~l~~~~l~~~~~L~~L~i~~~~-~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~~~p~~~~~l~~~~~ 608 (714)
.++.+|. |..+++|+.|+++ + |-.....|. .+.++++|+.|+|+.|.+.|.. |..+..|+.|+.
T Consensus 20 ~l~~ip~--l~~~~~L~~L~l~--~~n~l~~~~~~--------~~~~l~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~ 84 (347)
T 2ifg_A 20 ALDSLHH--LPGAENLTELYIE--NQQHLQHLELR--------DLRGLGELRNLTIVKSGLRFVA---PDAFHFTPRLSR 84 (347)
T ss_dssp CCTTTTT--SCSCSCCSEEECC--SCSSCCEECGG--------GSCSCCCCSEEECCSSCCCEEC---TTGGGSCSCCCE
T ss_pred CCCccCC--CCCCCCeeEEEcc--CCCCCCCcChh--------HhccccCCCEEECCCCccceeC---HHHhcCCcCCCE
Confidence 4666765 7778888888885 3 222222223 5778888888888888888765 666777887887
Q ss_pred hhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeecc
Q 044164 609 FYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHG 658 (714)
Q Consensus 609 ~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 658 (714)
|+|.+ |++++ +|.. .....+|+.|++++
T Consensus 85 L~l~~-------------------N~l~~-~~~~--~~~~~~L~~l~l~~ 112 (347)
T 2ifg_A 85 LNLSF-------------------NALES-LSWK--TVQGLSLQELVLSG 112 (347)
T ss_dssp EECCS-------------------SCCSC-CCST--TTCSCCCCEEECCS
T ss_pred EeCCC-------------------Cccce-eCHH--HcccCCceEEEeeC
Confidence 88777 77763 4433 22223378888773
No 153
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.58 E-value=0.00061 Score=74.32 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=33.8
Q ss_pred CCcCCCcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhHhc
Q 044164 11 NFHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERS 50 (714)
Q Consensus 11 ~~~~~LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~~~ 50 (714)
.+.. ||+|++.+||+|| +.+++.++++|||+|+++...
T Consensus 14 ~~~~-lp~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 14 LITS-LPFEISLKIFNYL-QFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp HHHH-SCHHHHHHHHTTS-CHHHHHHHHTTCHHHHHHHTT
T ss_pred ChHH-CCHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcC
Confidence 3446 9999999999999 899999999999999997643
No 154
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=96.50 E-value=0.0026 Score=59.52 Aligned_cols=83 Identities=11% Similarity=0.178 Sum_probs=63.6
Q ss_pred cccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccc
Q 044164 515 WTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFAL 594 (714)
Q Consensus 515 ~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~ 594 (714)
.++|++|.+ .+..++.++...+.++++|+.|.++ +|-... .|. ..+..+++|+.++|+.|.+.+..
T Consensus 29 ~~~l~~L~L---~~N~i~~~~~~~~~~l~~L~~L~Ls--~N~l~~-l~~-------~~f~~l~~L~~L~L~~N~l~~~~- 94 (170)
T 3g39_A 29 PTTTQVLYL---YDNQITKLEPGVFDRLTQLTRLDLD--NNQLTV-LPA-------GVFDKLTQLTQLSLNDNQLKSIP- 94 (170)
T ss_dssp CTTCSEEEC---CSSCCCCCCTTTTTTCTTCSEEECC--SSCCCC-CCT-------TTTTTCTTCCEEECCSSCCCCCC-
T ss_pred CCCCcEEEc---CCCcCCccChhhhcCcccCCEEECC--CCCcCc-cCh-------hhccCCCCCCEEECCCCccCEeC-
Confidence 477888888 5566777777778899999999996 443333 232 14678999999999999988754
Q ss_pred cCCCCCccchhhHHhhhcc
Q 044164 595 TAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 595 ~~p~~~~~l~~~~~~~l~~ 613 (714)
|..+..++.++.++|.+
T Consensus 95 --~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 95 --RGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp --TTTTTTCTTCCEEECCS
T ss_pred --HHHhcCCCCCCEEEeCC
Confidence 55577888888888888
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=96.39 E-value=0.0033 Score=59.02 Aligned_cols=83 Identities=12% Similarity=0.178 Sum_probs=63.1
Q ss_pred cccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCccccccc
Q 044164 515 WTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIGFAL 594 (714)
Q Consensus 515 ~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~~~~ 594 (714)
.++|+.|.+ .+..++.++...+.++++|+.|+++ +|-... .|. ..+..+++|+.++|+.|.+.+..
T Consensus 32 ~~~L~~L~L---s~N~l~~~~~~~~~~l~~L~~L~Ls--~N~l~~-i~~-------~~~~~l~~L~~L~L~~N~l~~l~- 97 (174)
T 2r9u_A 32 PTDKQRLWL---NNNQITKLEPGVFDHLVNLQQLYFN--SNKLTA-IPT-------GVFDKLTQLTQLDLNDNHLKSIP- 97 (174)
T ss_dssp CTTCSEEEC---CSSCCCCCCTTTTTTCTTCCEEECC--SSCCCC-CCT-------TTTTTCTTCCEEECCSSCCCCCC-
T ss_pred CCCCcEEEe---CCCCccccCHHHhcCCcCCCEEECC--CCCCCc-cCh-------hHhCCcchhhEEECCCCccceeC-
Confidence 478888888 5566777777778999999999996 443333 333 14578999999999999988644
Q ss_pred cCCCCCccchhhHHhhhcc
Q 044164 595 TAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 595 ~~p~~~~~l~~~~~~~l~~ 613 (714)
|..+..++.++.++|.+
T Consensus 98 --~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 98 --RGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp --TTTTTTCTTCSEEECCS
T ss_pred --HHHhccccCCCEEEeCC
Confidence 44477788888888888
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.38 E-value=0.00093 Score=72.01 Aligned_cols=61 Identities=23% Similarity=0.312 Sum_probs=35.2
Q ss_pred cccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCcccccccccc
Q 044164 517 KLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDC 586 (714)
Q Consensus 517 ~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~ 586 (714)
+|+.+.+ ...++.+....+.+|++|+++.+. ++..... + ....+-..+.+|++|+.+.|..
T Consensus 249 ~L~~i~l----p~~i~~I~~~aF~~c~~L~~l~l~--~~~~~~~-~--~~~I~~~aF~~c~~L~~l~l~~ 309 (401)
T 4fdw_A 249 GITTVKL----PNGVTNIASRAFYYCPELAEVTTY--GSTFNDD-P--EAMIHPYCLEGCPKLARFEIPE 309 (401)
T ss_dssp CCSEEEE----ETTCCEECTTTTTTCTTCCEEEEE--SSCCCCC-T--TCEECTTTTTTCTTCCEECCCT
T ss_pred CccEEEe----CCCccEEChhHhhCCCCCCEEEeC--CccccCC-c--ccEECHHHhhCCccCCeEEeCC
Confidence 4555554 133455656667788888888885 3322200 0 1123334677888888888773
No 157
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.26 E-value=0.0013 Score=71.16 Aligned_cols=39 Identities=31% Similarity=0.572 Sum_probs=34.3
Q ss_pred CCCCcCCCcHH----HHHHHhhcCCChhhhHHHHHHhHHHHHhHh
Q 044164 9 VPNFHDILPDA----IMSNIFSLITDTRTRNAMSLVCLKWCKLER 49 (714)
Q Consensus 9 ~~~~~~~LPde----iL~~Ifs~L~~~~dl~~~slVCkrW~~~~~ 49 (714)
.+.+.. ||+| |+.+||+|| +.+++.++++|||+|+.+..
T Consensus 8 ~d~~~~-lp~e~~~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 8 RDFITA-LPARGLDHIAENILSYL-DAKSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp CCHHHH-TGGGTCHHHHHHHHTTC-CHHHHHHHHHHCHHHHHHHH
T ss_pred cChHHH-CCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhc
Confidence 344556 9999 999999999 89999999999999999764
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.22 E-value=0.0023 Score=68.63 Aligned_cols=33 Identities=6% Similarity=0.111 Sum_probs=19.2
Q ss_pred ccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe
Q 044164 188 IAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA 227 (714)
Q Consensus 188 ~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L 227 (714)
.|.+|+++.|..+ ...+.+.. ..+|++|+.+++
T Consensus 69 ~c~~L~~i~lp~~---i~~I~~~a----F~~c~~L~~i~l 101 (394)
T 4fs7_A 69 GCRKVTEIKIPST---VREIGEFA----FENCSKLEIINI 101 (394)
T ss_dssp TCTTEEEEECCTT---CCEECTTT----TTTCTTCCEECC
T ss_pred CCCCceEEEeCCC---ccCcchhH----hhCCCCCcEEEe
Confidence 4667888887641 23333222 245777777777
No 159
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.14 E-value=0.0022 Score=69.53 Aligned_cols=40 Identities=15% Similarity=0.291 Sum_probs=35.1
Q ss_pred CCCCcCCCcHHHHHHHhhcCCChhhhHHHHHHhHHHHHhHhc
Q 044164 9 VPNFHDILPDAIMSNIFSLITDTRTRNAMSLVCLKWCKLERS 50 (714)
Q Consensus 9 ~~~~~~~LPdeiL~~Ifs~L~~~~dl~~~slVCkrW~~~~~~ 50 (714)
.+.+.. ||+|++.+||+|| +.+++.++++|||+|+.+...
T Consensus 16 ~d~~~~-lp~e~~~~i~~~l-~~~~l~~~~~v~~~~~~~~~~ 55 (445)
T 2ovr_B 16 RDFISL-LPKELALYVLSFL-EPKDLLQAAQTCRYWRILAED 55 (445)
T ss_dssp CSTTTS-SCHHHHHHHHTTS-CHHHHHHHTTSCHHHHHHHTC
T ss_pred CChhHH-CCHHHHHHHHHhC-CHHHHHHHHHHhHHHHhhcCc
Confidence 345567 9999999999999 899999999999999997643
No 160
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=95.91 E-value=0.005 Score=64.61 Aligned_cols=84 Identities=19% Similarity=0.209 Sum_probs=61.2
Q ss_pred cccccccceeeehhcc-cccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCcccc
Q 044164 513 DTWTKLKYLSLWIAVG-ELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGDAIG 591 (714)
Q Consensus 513 ~~~~~L~~L~l~~~~~-~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~~~~ 591 (714)
..+++|+.|+| .+ ..++.++...++++++|+.|+++ .|......|. .+.++++|+.|+|+.|.+.+
T Consensus 28 ~~~~~L~~L~l---~~~n~l~~~~~~~~~~l~~L~~L~l~--~N~l~~~~~~--------~~~~l~~L~~L~l~~N~l~~ 94 (347)
T 2ifg_A 28 PGAENLTELYI---ENQQHLQHLELRDLRGLGELRNLTIV--KSGLRFVAPD--------AFHFTPRLSRLNLSFNALES 94 (347)
T ss_dssp CSCSCCSEEEC---CSCSSCCEECGGGSCSCCCCSEEECC--SSCCCEECTT--------GGGSCSCCCEEECCSSCCSC
T ss_pred CCCCCeeEEEc---cCCCCCCCcChhHhccccCCCEEECC--CCccceeCHH--------HhcCCcCCCEEeCCCCccce
Confidence 44677888888 54 67888887778999999999997 5544443344 67889999999999999887
Q ss_pred ccccCCCCCccchhhHHhhhcc
Q 044164 592 FALTAPRGYADLSLWERFYLNG 613 (714)
Q Consensus 592 ~~~~~p~~~~~l~~~~~~~l~~ 613 (714)
.. |..+..++ ++.|+|.+
T Consensus 95 ~~---~~~~~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 95 LS---WKTVQGLS-LQELVLSG 112 (347)
T ss_dssp CC---STTTCSCC-CCEEECCS
T ss_pred eC---HHHcccCC-ceEEEeeC
Confidence 44 33344444 66666665
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=95.89 E-value=0.00099 Score=71.57 Aligned_cols=14 Identities=29% Similarity=0.451 Sum_probs=7.3
Q ss_pred cccCCccccccccc
Q 044164 572 SLVNYPQLSRMHFD 585 (714)
Q Consensus 572 ~l~~~~~L~~~~l~ 585 (714)
...+|++|+.+.|.
T Consensus 338 aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 338 SFRGCTSLSNINFP 351 (394)
T ss_dssp TTTTCTTCCEECCC
T ss_pred hccCCCCCCEEEEC
Confidence 44555555555554
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.65 E-value=0.0046 Score=66.53 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=31.0
Q ss_pred HhcCCcccceecccccCcCCChHHHHHHhccCCCccEEEeccccCccccCCCcchHHHhcCCcCcceeeeec
Q 044164 297 FESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQVHGICREIDSSMPAAGVALWKGLESLSIKN 368 (714)
Q Consensus 297 ~~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~~~~~c~~i~~~~~l~~l~~~~~L~~L~L~~ 368 (714)
+.+|++|+.+++..+. ++.-+ ... -.+.+|+.+.+... + ..+. ...+..|++|+.+.+..
T Consensus 176 F~~c~~L~~l~l~~n~-l~~I~---~~a-F~~~~L~~l~lp~~--l-~~I~----~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTK-ITKLP---AST-FVYAGIEEVLLPVT--L-KEIG----SQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp TTTCTTCCEEECTTSC-CSEEC---TTT-TTTCCCSEEECCTT--C-CEEC----TTTTTTCTTCCCEECCT
T ss_pred hhCcccCCeeecCCCc-ceEec---hhh-EeecccCEEEeCCc--h-heeh----hhHhhCCCCCCEEecCC
Confidence 4567778887776532 21110 001 12567777777541 0 1111 13566777777777754
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=95.28 E-value=0.028 Score=56.49 Aligned_cols=39 Identities=28% Similarity=0.327 Sum_probs=17.9
Q ss_pred hcCCcccceecccccCcCCChHHHHHHhccCCCccEEEecc
Q 044164 298 ESLPLLEELVLDVGNNVRDTWPALELLNSKCPRLKSLKLGQ 338 (714)
Q Consensus 298 ~~~p~L~~L~L~~c~~l~~~~~~l~~l~~~~~~L~~L~L~~ 338 (714)
..+|+|++|+|+++. ++.-. .+......+++|+.|+|++
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~-~l~~~~~~l~~L~~L~Ls~ 205 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLD-DMSSIVQKAPNLKILNLSG 205 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCG-GGTTHHHHSTTCCEEECTT
T ss_pred hhCCCCCEEECCCCC-CCCCc-cchhHHhhCCCCCEEECCC
Confidence 445666666666542 32211 0112224455555555554
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=94.05 E-value=0.068 Score=53.70 Aligned_cols=89 Identities=24% Similarity=0.232 Sum_probs=52.9
Q ss_pred HhcCCCCceEEecCccccCC-ChHHHHHhchhccCCCcEEEeccCccccCCCCHHHHHHHHhhCCCCcEEEe-eeecccc
Q 044164 157 FEHCPSLSSIDLSHFYCWTE-DLPTAFELYPSIAASLSHLNLLVGHSFTEGYKSHELLSITSACPNLSQLLA-TCVFDHR 234 (714)
Q Consensus 157 ~~~~~~L~~L~Ls~~~~~~~-~~~~~l~~l~~~~~~L~~L~L~~n~~~c~~i~~~~l~~l~~~~~~L~~L~L-~c~~~~~ 234 (714)
..++++|++|+|+++....- .++..+..++ +|+.|+|++|.. .++ ..+..+ ..+ +|++|++ ++.+..
T Consensus 166 ~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~----~L~~L~Ls~N~i--~~~--~~l~~l-~~l-~L~~L~L~~Npl~~- 234 (267)
T 3rw6_A 166 EENIPELLSLNLSNNRLYRLDDMSSIVQKAP----NLKILNLSGNEL--KSE--RELDKI-KGL-KLEELWLDGNSLCD- 234 (267)
T ss_dssp HHHCTTCCEEECTTSCCCCCGGGTTHHHHST----TCCEEECTTSCC--CSG--GGGGGG-TTS-CCSEEECTTSTTGG-
T ss_pred HhhCCCCCEEECCCCCCCCCccchhHHhhCC----CCCEEECCCCcc--CCc--hhhhhc-ccC-CcceEEccCCcCcc-
Confidence 35689999999999874321 3334445555 999999998643 222 122221 123 8999999 544211
Q ss_pred cccccC-H-HHHHHHHhhCCCCceEEe
Q 044164 235 FLGFVG-D-ETLLSIASNCPRLSLLHL 259 (714)
Q Consensus 235 ~~~~i~-~-~~l~~l~~~~~~L~~L~L 259 (714)
.+. . .....+...+|+|+.|+=
T Consensus 235 ---~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 235 ---TFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp ---GCSSHHHHHHHHHHHCTTCCEESS
T ss_pred ---ccCcchhHHHHHHHHCcccCeECC
Confidence 111 1 223455678899998874
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=65.59 E-value=4.8 Score=42.35 Aligned_cols=121 Identities=17% Similarity=0.326 Sum_probs=63.1
Q ss_pred cccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccC-cccccc
Q 044164 515 WTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCG-DAIGFA 593 (714)
Q Consensus 515 ~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~-~~~~~~ 593 (714)
+.+|+.+.+ . .....+....+.+|++|+++.+. .. ....|-....+|++|+.+.|..+ ..+|
T Consensus 264 c~~L~~i~l--p--~~~~~I~~~aF~~c~~L~~i~l~--~~---------i~~I~~~aF~~c~~L~~i~lp~~v~~I~-- 326 (394)
T 4gt6_A 264 CAYLASVKM--P--DSVVSIGTGAFMNCPALQDIEFS--SR---------ITELPESVFAGCISLKSIDIPEGITQIL-- 326 (394)
T ss_dssp CSSCCEEEC--C--TTCCEECTTTTTTCTTCCEEECC--TT---------CCEECTTTTTTCTTCCEEECCTTCCEEC--
T ss_pred cccccEEec--c--cccceecCcccccccccccccCC--Cc---------ccccCceeecCCCCcCEEEeCCcccEeh--
Confidence 455665544 1 22344445557788888888873 11 12333346788888888888654 1122
Q ss_pred ccCCCCCccchhhHHhhhccccccccccCCCCCCCCccccccccCcchhhhHHHhhhhhheeeccchhHHHHHHHhcCCC
Q 044164 594 LTAPRGYADLSLWERFYLNGIENLNLKELNYWPPQDMDVHQRSLSLPAAGLLSQCRSLRKLFIHGTANEHFMSFFLKIPT 673 (714)
Q Consensus 594 ~~~p~~~~~l~~~~~~~l~~~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 673 (714)
...|.++.+|+.+.+.. |.. +++. +-..+|.+|+++.+.|+.-. + +.+-...+
T Consensus 327 ---~~aF~~C~~L~~i~ip~-------------------sv~--~I~~-~aF~~C~~L~~i~~~~~~~~-~-~~~~~~~~ 379 (394)
T 4gt6_A 327 ---DDAFAGCEQLERIAIPS-------------------SVT--KIPE-SAFSNCTALNNIEYSGSRSQ-W-NAISTDSG 379 (394)
T ss_dssp ---TTTTTTCTTCCEEEECT-------------------TCC--BCCG-GGGTTCTTCCEEEESSCHHH-H-HTCBCCCC
T ss_pred ---HhHhhCCCCCCEEEECc-------------------ccC--EEhH-hHhhCCCCCCEEEECCceee-h-hhhhccCC
Confidence 22244444333333322 111 3332 23779999999999987543 2 23334556
Q ss_pred cccccc
Q 044164 674 LRDVQL 679 (714)
Q Consensus 674 l~~~~~ 679 (714)
|+.+.+
T Consensus 380 L~~i~i 385 (394)
T 4gt6_A 380 LQNLPV 385 (394)
T ss_dssp C-----
T ss_pred CCEEEe
Confidence 666654
No 166
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=54.05 E-value=8.8 Score=39.89 Aligned_cols=60 Identities=13% Similarity=0.189 Sum_probs=37.2
Q ss_pred ccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCc
Q 044164 514 TWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGD 588 (714)
Q Consensus 514 ~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~ 588 (714)
.+.+|+.+.+ . ..++.+....+.+|.+|+.+.+. .+ ....|-....+|++|+++.+..+.
T Consensus 238 ~~~~L~~i~l---p-~~v~~I~~~aF~~~~~l~~i~l~--~~---------i~~i~~~aF~~c~~L~~i~l~~~~ 297 (379)
T 4h09_A 238 GMKALDEIAI---P-KNVTSIGSFLLQNCTALKTLNFY--AK---------VKTVPYLLCSGCSNLTKVVMDNSA 297 (379)
T ss_dssp TCSSCCEEEE---C-TTCCEECTTTTTTCTTCCEEEEC--CC---------CSEECTTTTTTCTTCCEEEECCTT
T ss_pred CCccceEEEc---C-CCccEeCccccceeehhcccccc--cc---------ceeccccccccccccccccccccc
Confidence 3456666554 1 23455555667788888888883 11 122333467788888888887654
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.03 E-value=14 Score=30.43 Aligned_cols=49 Identities=10% Similarity=0.139 Sum_probs=34.9
Q ss_pred ccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccC
Q 044164 528 GELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCG 587 (714)
Q Consensus 528 ~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~ 587 (714)
|+.++.+....+.+|++|+++.|- +- ....|-..+.+|.+|+++.+...
T Consensus 5 g~~vt~I~~~aF~~c~~L~~i~iP---~~--------v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 5 GEPVVGMDKSLFAGNTVIREITVQ---PN--------IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCCSSCSCTTTTCTTCCCEEEC---TT--------SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCccCEecHHHhcCCCCCcEEEcC---Cc--------hheEcHHHHhccCCccEEEEcCC
Confidence 355566666678889999999983 21 34455567888999998888754
No 168
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=46.46 E-value=29 Score=36.16 Aligned_cols=60 Identities=18% Similarity=0.305 Sum_probs=39.9
Q ss_pred ccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccCc
Q 044164 514 TWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCGD 588 (714)
Q Consensus 514 ~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~~ 588 (714)
.+.+|+.+.+ + +.++.+....+.+|++|+++.|. +- ....|-....+|++|+.+.+..+.
T Consensus 309 ~c~~L~~i~l--p--~~v~~I~~~aF~~C~~L~~i~ip---~s--------v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 309 GCISLKSIDI--P--EGITQILDDAFAGCEQLERIAIP---SS--------VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp TCTTCCEEEC--C--TTCCEECTTTTTTCTTCCEEEEC---TT--------CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCCCcCEEEe--C--CcccEehHhHhhCCCCCCEEEEC---cc--------cCEEhHhHhhCCCCCCEEEECCce
Confidence 3566777665 1 23566666668889999999883 21 123344578889999998887654
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=34.67 E-value=21 Score=30.88 Aligned_cols=11 Identities=18% Similarity=0.111 Sum_probs=6.2
Q ss_pred CCcEEEeccCc
Q 044164 191 SLSHLNLLVGH 201 (714)
Q Consensus 191 ~L~~L~L~~n~ 201 (714)
+|+.|+|.+|-
T Consensus 56 ~L~~L~L~~NP 66 (130)
T 3rfe_A 56 ALRTAHLGANP 66 (130)
T ss_dssp TCCEEECCSSC
T ss_pred ccCEEEecCCC
Confidence 55666665543
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=25.06 E-value=47 Score=34.12 Aligned_cols=60 Identities=10% Similarity=0.213 Sum_probs=39.7
Q ss_pred ccccccceeeehhcccccccccccCCCCCCCcceEEEEEeccccCCCCcccccccccccccCCccccccccccC
Q 044164 514 TWTKLKYLSLWIAVGELLNPIRLAGLENCPILEEIQIKVVGDCRNQQKPVFMAEFGLNSLVNYPQLSRMHFDCG 587 (714)
Q Consensus 514 ~~~~L~~L~l~~~~~~~l~~l~~~~l~~~~~L~~L~i~~~~~~~~~~~p~~~~~~~l~~l~~~~~L~~~~l~~~ 587 (714)
.+.+|+.+.+ ....++.+....+.+|++|+++.|. .+ ....|-....+|++|+.+.|..+
T Consensus 284 ~c~~L~~i~l---~~~~i~~I~~~aF~~c~~L~~i~lp--~~---------l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 284 GCSNLTKVVM---DNSAIETLEPRVFMDCVKLSSVTLP--TA---------LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TCTTCCEEEE---CCTTCCEECTTTTTTCTTCCEEECC--TT---------CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccccc---cccccceehhhhhcCCCCCCEEEcC--cc---------ccEEHHHHhhCCCCCCEEEECCc
Confidence 4567777765 3334566666668889999998883 11 22334457788889988877543
Done!