BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044166
(369 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UNV|A Chain A, Pantoea Agglomerans Phenylalanine Aminomutase
pdb|3UNV|B Chain B, Pantoea Agglomerans Phenylalanine Aminomutase
Length = 547
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 23/104 (22%)
Query: 168 VYNAVK---ENYLCLTRVAA----GKTKPFKPIVAWMEFYNG-------VWSFTKE---A 210
+Y+ VK + YL +T ++ GKTKPF+P V M+ + G +W + A
Sbjct: 230 LYDEVKRLFDTYLTVTSLSIEGLHGKTKPFEPAVHRMKPHQGQLEVATTIWETLADSSLA 289
Query: 211 FKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVV 254
VE E +D + + I E ++I CT ++
Sbjct: 290 VNEHEVEKLIAEEMDGLVKASNHQI------EDAYSIRCTPQIL 327
>pdb|3MJO|A Chain A, Small Subunit (R2f) Of Native Ribonucleotide Reductase
From Corynebacterium Ammoniagenes
pdb|3MJO|B Chain B, Small Subunit (R2f) Of Native Ribonucleotide Reductase
From Corynebacterium Ammoniagenes
Length = 296
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 14/131 (10%)
Query: 241 LEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKSCFAFLTNQSL------WRF 294
L+ + + + ++ D E A YT F+E++ A S F+T S +R+
Sbjct: 75 LDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNI-FMTLASTPQINEAFRW 133
Query: 295 DKRNQN-----SLALDWFDGAVSQPQLVLADLTEA-LFPTGNYTITYFRNIAKGEGVVNI 348
+ N+N + + +++G + V + L E+ LF +G Y Y + AK +I
Sbjct: 134 SEENENLQRKAKIIMSYYNGDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADI 193
Query: 349 DAKMCDRDTSI 359
++ RD S+
Sbjct: 194 -IRLIIRDESV 203
>pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGN|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe
Containing, Form
pdb|1KGO|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGO|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Reduced, Fe
Containing, Form
pdb|1KGP|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|B Chain B, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|C Chain C, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1KGP|D Chain D, R2f From Corynebacterium Ammoniagenes In Its Mn
Substituted Form
pdb|1OQU|A Chain A, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|1OQU|B Chain B, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|1OQU|C Chain C, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|1OQU|D Chain D, A Protein Coordinated Tri-Nuclear Fe Complex Formed During
Soaking Of Crystals Of The Ribonucleotide Reductase R2f
Protein From Corynebacterium Ammoniagenes
pdb|3DHZ|A Chain A, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
pdb|3DHZ|B Chain B, Apo (Iron Free) Structure Of C. Ammoniagenes R2 Protein
Length = 329
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 14/131 (10%)
Query: 241 LEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKSCFAFLTNQSL------WRF 294
L+ + + + ++ D E A YT F+E++ A S F+T S +R+
Sbjct: 76 LDTIQGTVGAISLLPDAETMHEEAVYTNIAFMESVHAKSYSNI-FMTLASTPQINEAFRW 134
Query: 295 DKRNQN-----SLALDWFDGAVSQPQLVLADLTEA-LFPTGNYTITYFRNIAKGEGVVNI 348
+ N+N + + +++G + V + L E+ LF +G Y Y + AK +I
Sbjct: 135 SEENENLQRKAKIIMSYYNGDDPLKKKVASTLLESFLFYSGFYLPMYLSSRAKLTNTADI 194
Query: 349 DAKMCDRDTSI 359
++ RD S+
Sbjct: 195 -IRLIIRDESV 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,850,721
Number of Sequences: 62578
Number of extensions: 437271
Number of successful extensions: 664
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 663
Number of HSP's gapped (non-prelim): 4
length of query: 369
length of database: 14,973,337
effective HSP length: 100
effective length of query: 269
effective length of database: 8,715,537
effective search space: 2344479453
effective search space used: 2344479453
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)