BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044166
(369 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P47312|TKT_MYCGE Transketolase OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 /
NCTC 10195) GN=tkt PE=3 SV=1
Length = 648
Score = 38.9 bits (89), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 30/67 (44%)
Query: 96 LKLYQGGEIGLVNKSEPLQFSQYAAHFTTDSDQPQACNFANFAPFGEDGPLRRAEWIKFL 155
+K +GG +G+ + P+ FS + HF D DQP+ N F G + F
Sbjct: 15 IKHAKGGHVGMAIGASPILFSLFTKHFHFDPDQPKWINRDRFVLSAGHGSMALYSIFHFA 74
Query: 156 GIFANAE 162
G+ + E
Sbjct: 75 GLISKQE 81
>sp|Q58059|Y642_METJA Uncharacterized protein MJ0642 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0642 PE=4 SV=1
Length = 333
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 46/93 (49%), Gaps = 5/93 (5%)
Query: 140 FGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEF 199
+ E L + EWIKF F N +A +V+N + E + + ++ +KP+VA+ +
Sbjct: 144 YKEPKFLGKMEWIKFYASFYNKYKKAEKVFNKIIEEKRRILKSLNSRSIKYKPVVAFFGY 203
Query: 200 Y-NGVWSFTKEAFKLKYVEDAGG----ENVDSS 227
+ N + + K + ++ + G ENV+ +
Sbjct: 204 HKNQPYIYGKSHYIPNWIREIKGNYLFENVEGT 236
>sp|Q8DY96|XERDL_STRA5 Tyrosine recombinase XerD-like OS=Streptococcus agalactiae serotype
V (strain ATCC BAA-611 / 2603 V/R) GN=SAG1596 PE=3 SV=1
Length = 246
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 42 RMAARTKYCTARIKSFVIPMSNYSVDTDFFPGKLLGLLSSMKGMTSESVAS 92
R+ K A+ KS ++ +SN+ DTD+ G+L+ LL G+T +A+
Sbjct: 82 RLQETEKITLAQTKSQIMDLSNFYQDTDYPSGRLIALLILSLGLTPAEIAN 132
>sp|Q3JZT9|XERDL_STRA1 Tyrosine recombinase XerD-like OS=Streptococcus agalactiae serotype
Ia (strain ATCC 27591 / A909 / CDC SS700) GN=SAK_1611
PE=3 SV=1
Length = 246
Score = 34.3 bits (77), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 42 RMAARTKYCTARIKSFVIPMSNYSVDTDFFPGKLLGLLSSMKGMTSESVAS 92
R+ K A+ KS ++ +SN+ DTD+ G+L+ LL G+T +A+
Sbjct: 82 RLQETEKITLAQTKSQIMDLSNFYQDTDYPSGRLIALLILSLGLTPAEIAN 132
>sp|Q8E3W1|XERDL_STRA3 Tyrosine recombinase XerD-like OS=Streptococcus agalactiae serotype
III (strain NEM316) GN=gbs1645 PE=3 SV=1
Length = 246
Score = 32.7 bits (73), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 42 RMAARTKYCTARIKSFVIPMSNYSVDTDFFPGKLLGLLSSMKGMTSESVAS 92
R+ K + KS ++ +SN+ DTD+ G+L+ LL G+T +A+
Sbjct: 82 RLQETEKITLTQTKSQIMDLSNFYQDTDYPSGRLIALLILSLGLTPAEIAN 132
>sp|Q58282|Y872_METJA Uncharacterized lipoprotein MJ0872 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJ0872 PE=4 SV=2
Length = 391
Score = 32.3 bits (72), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 7/124 (5%)
Query: 135 ANFAPFGEDGPLRRAEWIKFLGIF--ANAEARANQVY-NAVKENYLCLTRVAAGKTKPFK 191
+ F + E + R EWIKF F +NA +A++ + N VK L +V +P
Sbjct: 196 SRFYTYQEPTYMGRVEWIKFAAAFWGSNAYKKADKWFENVVKVRENILKKVQNVTNEPTV 255
Query: 192 PIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTV 251
I +W + N + +++ K + + G+NV N+ + D E +
Sbjct: 256 VIFSWSKTKNMPGIYGNDSYYSKMIAEFKGKNVFDDYNRGYQYV----DKETFYERAMNA 311
Query: 252 DVVI 255
DVVI
Sbjct: 312 DVVI 315
>sp|A4Q9E4|TTLL2_MOUSE Probable tubulin polyglutamylase TTLL2 OS=Mus musculus GN=Ttll2
PE=2 SV=1
Length = 540
Score = 32.0 bits (71), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 176 YLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKM 231
Y+C+T FKP+ +M + G+ F E F L+ +ED +SSINK+
Sbjct: 216 YVCIT--------GFKPLTIYM-YQEGLVRFATEKFDLRNLEDYYSHLTNSSINKL 262
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,349,593
Number of Sequences: 539616
Number of extensions: 5691641
Number of successful extensions: 11238
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 11231
Number of HSP's gapped (non-prelim): 8
length of query: 369
length of database: 191,569,459
effective HSP length: 119
effective length of query: 250
effective length of database: 127,355,155
effective search space: 31838788750
effective search space used: 31838788750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)