Query 044166
Match_columns 369
No_of_seqs 274 out of 1471
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 12:03:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044166.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/044166hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09534 btuF corrinoid ABC tr 100.0 4.9E-30 1.1E-34 249.0 23.0 241 54-328 53-308 (359)
2 cd01142 TroA_e Periplasmic bin 100.0 6.4E-30 1.4E-34 241.4 18.6 247 55-328 18-282 (289)
3 TIGR03659 IsdE heme ABC transp 100.0 6.2E-29 1.3E-33 234.9 20.5 240 58-326 32-289 (289)
4 cd01149 HutB Hemin binding pro 100.0 1.3E-28 2.7E-33 225.8 20.0 215 61-296 1-233 (235)
5 cd01139 TroA_f Periplasmic bin 100.0 5.1E-29 1.1E-33 240.8 17.7 269 55-340 11-333 (342)
6 cd01148 TroA_a Metal binding p 100.0 2.9E-28 6.4E-33 229.5 21.8 248 54-322 11-284 (284)
7 PRK14048 ferrichrome/ferrioxam 100.0 1.6E-28 3.6E-33 240.1 20.0 269 55-340 42-360 (374)
8 cd01140 FatB Siderophore bindi 100.0 8.6E-28 1.9E-32 224.6 21.3 248 55-326 6-269 (270)
9 cd01147 HemV-2 Metal binding p 100.0 5.1E-28 1.1E-32 224.9 18.9 228 57-309 1-261 (262)
10 COG0614 FepB ABC-type Fe3+-hyd 100.0 1.5E-27 3.3E-32 227.6 21.0 249 56-329 47-316 (319)
11 cd01144 BtuF Cobalamin binding 100.0 6.6E-27 1.4E-31 215.5 19.7 228 62-323 1-245 (245)
12 cd01146 FhuD Fe3+-siderophore 99.9 5.4E-27 1.2E-31 217.6 18.2 220 60-296 2-239 (256)
13 PRK11411 fecB iron-dicitrate t 99.9 7.4E-26 1.6E-30 215.3 19.7 244 55-328 33-297 (303)
14 TIGR03868 F420-O_ABCperi propo 99.9 4.4E-25 9.6E-30 208.2 22.9 246 55-326 11-285 (287)
15 PF01497 Peripla_BP_2: Peripla 99.9 8.5E-27 1.9E-31 213.3 7.2 217 64-296 1-236 (238)
16 COG4558 ChuT ABC-type hemin tr 99.9 1E-23 2.2E-28 190.4 20.0 239 60-328 42-298 (300)
17 cd01143 YvrC Periplasmic bindi 99.9 5.6E-24 1.2E-28 188.9 18.0 179 59-256 1-195 (195)
18 PRK03379 vitamin B12-transport 99.9 1.8E-23 3.9E-28 194.6 19.4 224 61-326 17-257 (260)
19 cd01138 FeuA Periplasmic bindi 99.9 4.2E-23 9.2E-28 190.5 18.6 225 55-296 3-240 (248)
20 PRK10576 iron-hydroxamate tran 99.9 3.1E-23 6.6E-28 196.3 17.9 243 56-325 27-289 (292)
21 PRK10957 iron-enterobactin tra 99.9 7.3E-23 1.6E-27 195.9 20.7 245 55-325 38-316 (317)
22 COG4607 CeuA ABC-type enteroch 99.9 1.4E-21 3E-26 177.7 13.8 251 55-325 52-319 (320)
23 COG4594 FecB ABC-type Fe3+-cit 99.8 1.9E-19 4.1E-24 159.5 16.0 247 55-328 43-307 (310)
24 cd01141 TroA_d Periplasmic bin 99.8 2E-19 4.4E-24 158.8 16.3 166 55-226 2-185 (186)
25 cd00636 TroA-like Helical back 99.1 8.3E-10 1.8E-14 91.9 11.9 123 62-186 1-138 (148)
26 COG4592 FepB ABC-type Fe2+-ent 99.1 7E-09 1.5E-13 92.4 16.3 246 56-325 41-318 (319)
27 cd01967 Nitrogenase_MoFe_alpha 94.1 0.25 5.5E-06 48.9 8.9 87 128-225 228-314 (406)
28 cd01972 Nitrogenase_VnfE_like 81.1 6.3 0.00014 39.3 8.0 88 128-225 234-322 (426)
29 TIGR01282 nifD nitrogenase mol 81.0 7.6 0.00017 39.3 8.5 88 128-226 275-364 (466)
30 PHA02097 hypothetical protein 79.1 3.1 6.7E-05 28.0 3.3 27 11-38 32-58 (59)
31 TIGR01860 VNFD nitrogenase van 75.2 13 0.00029 37.5 8.3 88 128-226 269-357 (461)
32 TIGR01283 nifE nitrogenase mol 73.8 17 0.00037 36.6 8.7 87 128-226 265-355 (456)
33 cd01968 Nitrogenase_NifE_I Nit 71.7 15 0.00033 36.3 7.7 87 128-226 226-316 (410)
34 cd01976 Nitrogenase_MoFe_alpha 70.0 17 0.00038 36.2 7.7 88 128-226 240-329 (421)
35 TIGR01861 ANFD nitrogenase iro 69.8 11 0.00024 38.7 6.3 47 128-177 270-316 (513)
36 TIGR01284 alt_nitrog_alph nitr 66.8 18 0.00038 36.6 7.0 51 128-181 267-317 (457)
37 TIGR01862 N2-ase-Ialpha nitrog 58.8 31 0.00067 34.7 7.1 89 128-226 259-347 (443)
38 cd01965 Nitrogenase_MoFe_beta_ 57.5 64 0.0014 32.2 9.1 85 128-225 242-327 (428)
39 cd01977 Nitrogenase_VFe_alpha 56.7 37 0.00079 33.8 7.2 46 128-176 230-275 (415)
40 PRK09426 methylmalonyl-CoA mut 55.8 46 0.00099 35.7 8.0 59 190-258 581-641 (714)
41 PRK14477 bifunctional nitrogen 54.3 46 0.001 36.8 8.0 87 128-225 252-348 (917)
42 cd02070 corrinoid_protein_B12- 51.3 1.4E+02 0.003 26.3 9.3 99 149-257 36-140 (201)
43 cd02069 methionine_synthase_B1 49.6 1.3E+02 0.0029 26.9 9.0 99 149-257 40-146 (213)
44 cd01980 Chlide_reductase_Y Chl 47.0 72 0.0016 31.7 7.5 85 129-226 224-309 (416)
45 cd00316 Oxidoreductase_nitroge 46.1 61 0.0013 31.7 6.8 87 128-225 221-307 (399)
46 COG2185 Sbm Methylmalonyl-CoA 45.2 51 0.0011 27.7 5.1 59 190-258 11-71 (143)
47 TIGR00640 acid_CoA_mut_C methy 44.9 37 0.0008 28.0 4.3 58 191-258 2-61 (132)
48 PRK14478 nitrogenase molybdenu 43.2 1.1E+02 0.0024 31.0 8.3 87 128-226 259-353 (475)
49 PF08484 Methyltransf_14: C-me 42.1 16 0.00035 31.3 1.7 92 154-257 24-133 (160)
50 cd01971 Nitrogenase_VnfN_like 41.7 63 0.0014 32.2 6.2 48 128-176 228-276 (427)
51 TIGR02370 pyl_corrinoid methyl 37.5 2.5E+02 0.0054 24.7 8.7 99 149-257 37-142 (197)
52 TIGR01501 MthylAspMutase methy 35.5 63 0.0014 26.8 4.2 58 191-258 1-60 (134)
53 PF00148 Oxidored_nitro: Nitro 35.3 1.2E+02 0.0026 29.7 7.0 87 128-226 213-300 (398)
54 TIGR02015 BchY chlorophyllide 35.0 96 0.0021 31.0 6.2 43 128-176 229-275 (422)
55 PRK02261 methylaspartate mutas 30.6 90 0.0019 25.9 4.4 59 190-258 2-62 (137)
56 PRK02842 light-independent pro 29.8 1.5E+02 0.0033 29.5 6.7 47 128-176 230-277 (427)
57 PF06309 Torsin: Torsin; Inte 28.4 1.4E+02 0.0031 24.5 5.1 52 156-219 25-76 (127)
58 cd02072 Glm_B12_BD B12 binding 26.4 90 0.0019 25.7 3.6 42 208-258 15-58 (128)
59 cd01141 TroA_d Periplasmic bin 23.8 69 0.0015 27.4 2.7 19 237-257 58-76 (186)
60 cd01974 Nitrogenase_MoFe_beta 22.4 1.8E+02 0.0039 29.0 5.7 86 128-225 246-331 (435)
61 cd02766 MopB_3 The MopB_3 CD i 22.2 4.6E+02 0.01 26.6 8.7 48 239-301 150-199 (501)
62 cd01143 YvrC Periplasmic bindi 21.5 84 0.0018 26.9 2.8 19 237-257 49-67 (195)
63 PRK14476 nitrogenase molybdenu 20.5 2.1E+02 0.0046 28.8 5.8 45 128-176 254-298 (455)
No 1
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=99.97 E-value=4.9e-30 Score=249.00 Aligned_cols=241 Identities=12% Similarity=0.001 Sum_probs=177.3
Q ss_pred eeEEEecCceEEEec-CCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccC--CCchhhhccCceEE--ecCC-
Q 044166 54 IKSFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVN--KSEPLQFSQYAAHF--TTDS- 126 (369)
Q Consensus 54 ~~~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G--~~n~E~i~~l~P~~--~~~~- 126 (369)
..+|+.|++|||+.. ...++ .+||+.|+|||++....+.|.+.+. ..+...+ ..|+|+|++++|++ ....
T Consensus 53 ~Vti~~~p~RIVsL~~~~~e~l~aLG~~d~iVGv~~~~~~~~~~~~~---~~v~~g~~~~~n~E~Il~l~PDLVi~~~~~ 129 (359)
T PRK09534 53 EITLDERPERVVTLNPSAAQTMWELGARDRVVGVTQYASYLDGAEER---TNVSGGQPFGVNVEAVVGLDPDLVLAPNAV 129 (359)
T ss_pred EEEecCCCCeEEecCccHHHHHHHcCCCCeEEEecccccCChhhhhC---CcccCCCCCCCCHHHHhcCCCCEEEEcCCC
Confidence 357788999999954 45677 9999999999998411122433221 1122111 22999999999955 2221
Q ss_pred C-------CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEee
Q 044166 127 D-------QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEF 199 (369)
Q Consensus 127 ~-------~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~ 199 (369)
. ++.||||+.+.. ..+..+..++++.+|++||+|++|++++++++++++.+++++++.+ +||+|++...
T Consensus 130 ~~~~~~~L~~~gi~V~~~~~--~~~l~~i~~~i~~lG~i~G~e~~A~~li~~~~~~i~~i~~~~~~~~--~~p~Vl~~~~ 205 (359)
T PRK09534 130 AGDTVTRLREAGITVFHFPA--ATSIEDVAEKTATIGRLTGNCEAAAETNAEMRDRVDAVEDRTADVD--DRPRVLYPLG 205 (359)
T ss_pred chHHHHHHHHCCCeEEEeCC--CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhccC--CCCeEEEEec
Confidence 1 578999987742 1234456789999999999999999999999999999999998875 4899998542
Q ss_pred eCCEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccC
Q 044166 200 YNGVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAA 278 (369)
Q Consensus 200 ~~~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~ 278 (369)
+ .++.| ++|.++|++.+|++|++.+. ...++..+|+|+|+++ |||+||+... . + +..+++
T Consensus 206 --~-~~~~g~~s~~~~li~~aG~~Ni~~~~---~~~~~~~vs~E~ll~~--nPDvIiv~~~----~----~---~~~~~p 266 (359)
T PRK09534 206 --D-GYTAGGNTFIGALIEAAGGHNVAADA---TTDGYPQLSEEVIVQQ--DPDVIVVATA----S----A---LVAETE 266 (359)
T ss_pred --C-ceecCCCccHHHHHHHhCCEehhhhc---CcCCCCCCCHHHHHHh--CCCEEEEcCc----c----h---hhhccc
Confidence 2 24556 99999999999999999742 2235779999999999 9999997421 1 1 223469
Q ss_pred CCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCCC
Q 044166 279 DKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPT 328 (369)
Q Consensus 279 ~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhPe 328 (369)
.|++++||||||||.++.. .|...++. ....+++|+++|||+
T Consensus 267 ~~~~l~AVKngrV~~v~~~-------~~~~p~pr-~~~~~e~LA~~l~~~ 308 (359)
T PRK09534 267 PYASTTAGETGNVVTVNVN-------HINQPAPR-IVESMATMATAFHNT 308 (359)
T ss_pred ccccCchhhcCCEEEeCcc-------cccCCCCc-HHHHHHHHHHHhhhh
Confidence 9999999999999999642 23334443 445589999999997
No 2
>cd01142 TroA_e Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=99.97 E-value=6.4e-30 Score=241.37 Aligned_cols=247 Identities=15% Similarity=0.063 Sum_probs=176.2
Q ss_pred eEEEecCceEEEe-cCCccc-cccCCCCcEEEecCCCcCcHHHHhhhc-CCcccccCCC---chhhhccCceEEe--cCC
Q 044166 55 KSFVIPMSNYSVD-TDFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQ-GGEIGLVNKS---EPLQFSQYAAHFT--TDS 126 (369)
Q Consensus 55 ~~i~~Pv~RIv~~-~~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~-~g~i~~~G~~---n~E~i~~l~P~~~--~~~ 126 (369)
.+++.|++|||+. .+++++ .+||..+++||++......+....... ...++.+|.. |+|+|++++|+|+ +..
T Consensus 18 v~~~~~p~RIvsl~~~~~e~l~aLg~~~~ivg~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~n~E~i~~l~PDLIi~~~~ 97 (289)
T cd01142 18 VTIPDEVKRIAALWGAGNAVVAALGGGKLIVATTSTVQQEPWLYRLAPSLENVATGGTGNDVNIEELLALKPDVVIVWST 97 (289)
T ss_pred EECCCCceEEEecCCcHHHHHHHhccccceeecCCCcccchhHHHhCccHhhCcccCCCCCcCHHHHHhcCCCEEEEeCC
Confidence 5677789999995 455677 999999999999731111222211110 1123334543 9999999999552 221
Q ss_pred ---C---CCCC-ceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEee
Q 044166 127 ---D---QPQA-CNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEF 199 (369)
Q Consensus 127 ---~---~~~g-Ipvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~ 199 (369)
+ +..+ ||++.+... +.-...++++++|++||+|++|++++++++++++.++++++++...++|+|++.
T Consensus 98 ~~~~~~~~~~~~ipv~~~~~~---~~~~~~~~~~~lg~~~g~~~~a~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~-- 172 (289)
T cd01142 98 DGKEAGKAVLRLLNALSLRDA---ELEEVKLTIALLGELLGRQEKAEALVAYFDDNLAYVAARTKKLPDSERPRVYYA-- 172 (289)
T ss_pred CchHHHHhhhcceeEEEeccc---cHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCChhhCceEEEE--
Confidence 1 3345 899877532 123456899999999999999999999999999999999876543467888873
Q ss_pred eCCEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccC
Q 044166 200 YNGVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAA 278 (369)
Q Consensus 200 ~~~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~ 278 (369)
..+.|++.| +++.+++++.+|+.|++.+. ...++.++|+|+|+++ |||+||.... . . ..+...+|
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~G~~n~~~~~---~~~~~~~is~E~l~~~--~pD~ii~~~~----~--~---~~~~~~~p 238 (289)
T cd01142 173 GPDPLTTDGTGSITNSWIDLAGGINVASEA---TKKGSGEVSLEQLLKW--NPDVIIVGNA----D--T---KAAILADP 238 (289)
T ss_pred CCCCceecCCCChHHHHHHHhCCeEhhhcc---ccCCceEEcHHHHhhc--CCCEEEEcCC----c--c---hhhhhcCc
Confidence 245577766 99999999999999999842 2245789999999998 9999987532 1 1 22233479
Q ss_pred CCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHH--HHHHHhCCC
Q 044166 279 DKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLA--DLTEALFPT 328 (369)
Q Consensus 279 ~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~--dla~~lhPe 328 (369)
.|+.++||||||||.++.. .|+..++... ..+. +|++++|||
T Consensus 239 ~~~~l~Avk~~~v~~~~~~-------~~~~~~p~~~-~~~~~~~la~~l~pe 282 (289)
T cd01142 239 RWQNLRAVKNGRVYVNPEG-------AFWWDRPSAE-EALLGLWLAKTLYPE 282 (289)
T ss_pred ccccchhhhCCcEEeCCCC-------CcccCCCChh-hHHHHHHHHHhcChh
Confidence 9999999999999998531 1223344433 3344 899999999
No 3
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=99.96 E-value=6.2e-29 Score=234.85 Aligned_cols=240 Identities=15% Similarity=0.127 Sum_probs=175.4
Q ss_pred EecCceEEEec-CCccc-cccCCCCcEEEecCCC-cCcHHHHhhhcCCcccccCC---CchhhhccCceEEe--cC-CC-
Q 044166 58 VIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTSES-VASGCVLKLYQGGEIGLVNK---SEPLQFSQYAAHFT--TD-SD- 127 (369)
Q Consensus 58 ~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~-~~~p~~~~~~~~g~i~~~G~---~n~E~i~~l~P~~~--~~-~~- 127 (369)
..+++|||+.+ ...++ .+||.. |||++... ...+.+. +++.+|. .|+|+|++++|+++ .. .+
T Consensus 32 ~~~p~RVv~l~~~~~e~l~~LG~~--ivg~~~~~~~~~~~~~------~i~~vg~~~~~n~E~I~al~PDlIi~~~~~~~ 103 (289)
T TIGR03659 32 KSKEERIVATSVAVTEILDKLDLD--LVGVPTSQKTLPKRYK------DVPEVGNPMSPDMEKIKSLKPTVVLSVTTLEE 103 (289)
T ss_pred CCCCCeEEEcCHHHHHHHHHcCCC--eEeeeCccccCChHHh------CCCccCCCCCCCHHHHhccCCcEEEEcCcccH
Confidence 35899999954 44567 899985 99997422 1122221 3455663 49999999999552 22 11
Q ss_pred ------CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeC
Q 044166 128 ------QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYN 201 (369)
Q Consensus 128 ------~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~ 201 (369)
++.||||+++. + .+.....++++++|++||++++|+++++++++++++++++++.. ++|+|++.....
T Consensus 104 ~~~~~l~~~gi~v~~~~-~--~~~~~~~~~i~~lg~~~G~~~~A~~li~~~~~~v~~i~~~~~~~---~~~~v~~~~~~~ 177 (289)
T TIGR03659 104 DLGPKFKQLGVEATFLN-L--TSVDGMKKSITELGEKYGREEQAEKLVKEINEKEAEVKKKVKGK---KKPKVLILMGVP 177 (289)
T ss_pred HHHHHHHHcCCcEEEEc-C--CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEecC
Confidence 57899998763 2 23456789999999999999999999999999999999998764 478998876555
Q ss_pred CEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhh-cccCC
Q 044166 202 GVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLEN-IDAAD 279 (369)
Q Consensus 202 ~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~-~~~~~ 279 (369)
+.|++.+ ++|.+.|++++|+.|++.+. +.++.++|+|+++++ |||+||+.... .+.. +.....+. ..+|.
T Consensus 178 ~~~~~~~~~~~~~~li~~~G~~n~~~~~----~~~~~~iS~E~i~~~--~PDvI~~~~~~-~~~~-~~~~~~~~l~~~p~ 249 (289)
T TIGR03659 178 GSYLVATENSYIGDLVKLAGGENVYKGN----KQEYLSSNTEYLLKA--NPDIILRAAHG-MPDE-VKKMFDEEFKTNDI 249 (289)
T ss_pred CceEEecCcchHHHHHHHhCCccccccC----CCCccccCHHHHHHc--CCCEEEEcCCC-CchH-HHHHHHHHHhcChh
Confidence 6788877 89999999999999998732 235789999999998 99999975321 1110 11122333 34799
Q ss_pred CccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhC
Q 044166 280 KSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALF 326 (369)
Q Consensus 280 ~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lh 326 (369)
|++++|||+||||.++... |...+..+....|++|++++|
T Consensus 250 ~~~l~AVk~g~v~~i~~~~-------~~~~~~~~~~~~l~~la~~ly 289 (289)
T TIGR03659 250 WKHFEAVKNNRVYDLDEEL-------FGMTANLKVAEALDELKKMLY 289 (289)
T ss_pred hhhCchhhcCcEEEeChhh-------hcCCCCccHHHHHHHHHHhhC
Confidence 9999999999999995421 222344555577899999998
No 4
>cd01149 HutB Hemin binding protein HutB. These proteins have been shown to function as initial receptors in ABC transport of hemin and hemoproteins in many eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=99.96 E-value=1.3e-28 Score=225.76 Aligned_cols=215 Identities=12% Similarity=0.019 Sum_probs=161.0
Q ss_pred CceEEEec-CCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCC---CchhhhccCceEE--ecCC---C---
Q 044166 61 MSNYSVDT-DFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNK---SEPLQFSQYAAHF--TTDS---D--- 127 (369)
Q Consensus 61 v~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~---~n~E~i~~l~P~~--~~~~---~--- 127 (369)
++|||+.. ....+ .+||+.|+|||++..... |... .+++.+|. .|+|+|++++|++ .++. .
T Consensus 1 p~rIv~l~~~~~~~l~~Lg~~~~ivg~~~~~~~-p~~~-----~~v~~~g~~~~~n~E~i~~l~PDlIi~~~~~~~~~~~ 74 (235)
T cd01149 1 PERIVSLGGSVTEIVYALGAGDRLVGVDSTSTY-PEAA-----AKLPDVGYMRQLSAEGVLSLKPTLVIASDEAGPPEAL 74 (235)
T ss_pred CceEEEcCCcHHHHHHHhCCCCeEEEecCCCCC-cHhH-----hhcCccCCccCcCHHHhhccCCCEEEEcCCCCCHHHH
Confidence 57999944 44567 999999999999742112 3322 13455664 3999999999955 2221 1
Q ss_pred ---CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeee-CCE
Q 044166 128 ---QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFY-NGV 203 (369)
Q Consensus 128 ---~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~-~~~ 203 (369)
++.||||+.+... .++.+..++++++|++||+|++|++++++++++++++++++++.. ++|+|++.... ++.
T Consensus 75 ~~l~~~gipvv~~~~~--~~~~~~~~~~~~lg~i~g~e~~A~~l~~~~~~~i~~i~~~~~~~~--~~~~v~~~~~~~~~~ 150 (235)
T cd01149 75 DQLRAAGVPVVTVPST--PTLDGLLTKIRQVAQALGVPEKGEALAQEVRQRLAALRKTVAAHK--KPPRVLFLLSHGGGA 150 (235)
T ss_pred HHHHHcCCeEEEecCC--CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhhhcc--CCceEEEEEEeCCCc
Confidence 4789999977522 245567899999999999999999999999999999999887643 47888765433 356
Q ss_pred EEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccCCCcc
Q 044166 204 WSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKSC 282 (369)
Q Consensus 204 ~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (369)
+++.| +++.+++++.+|++|++++ . .++.++|+|+++++ |||+||+....... .....+..++|.|++
T Consensus 151 ~~~~~~~s~~~~~l~~~G~~n~~~~---~--~~~~~vs~E~l~~~--~pD~I~~~~~~~~~----~~~~~~~~~~p~~~~ 219 (235)
T cd01149 151 AMAAGRNTAADAIIALAGAVNAAAG---F--RGYKPLSAEALIAA--QPDVILVMSRGLDA----VGGVDGLLKLPGLAQ 219 (235)
T ss_pred eEEECCCchHHHHHHHcCCeehhhc---c--cCCccCCHHHHHHh--CCCEEEEecCCccc----chhHHHHHhCcchhc
Confidence 78877 8999999999999999862 2 35789999999999 99999986432111 012223345799999
Q ss_pred ccceeeCcEEEecc
Q 044166 283 FAFLTNQSLWRFDK 296 (369)
Q Consensus 283 l~AVkngrVy~~~~ 296 (369)
++||||||||.++.
T Consensus 220 l~AVk~~~vy~~~~ 233 (235)
T cd01149 220 TPAGRNKRILAMDD 233 (235)
T ss_pred CchhhcCcEEEccC
Confidence 99999999999854
No 5
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=99.96 E-value=5.1e-29 Score=240.85 Aligned_cols=269 Identities=13% Similarity=0.107 Sum_probs=181.3
Q ss_pred eEEEecCceEEEecCC-ccc-cccCCC---CcEEEecC-CCcCcH----HHHhhh-cCCcccccCC-----CchhhhccC
Q 044166 55 KSFVIPMSNYSVDTDF-FPG-KLLGLL---SSMKGMTS-ESVASG----CVLKLY-QGGEIGLVNK-----SEPLQFSQY 118 (369)
Q Consensus 55 ~~i~~Pv~RIv~~~~~-~~~-~~Lg~~---d~IvGv~~-~~~~~p----~~~~~~-~~g~i~~~G~-----~n~E~i~~l 118 (369)
.+|+.|++|||++... ..+ .+||.. +++||++. .....| .+.... ...+++.+|. .|+|+|++|
T Consensus 11 v~~~~~p~RVv~~~~~~~~~l~~l~~~~~~~~ivg~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~n~E~l~~l 90 (342)
T cd01139 11 VTLDAPVERVLLGEGRQLYALALLEGENPFARIVGWGGDLKKGDPDTYAKYKEKFPEIADIPLIGSTYNGDFSVEKVLTL 90 (342)
T ss_pred EecCCCccEEEEcCchHHHHHHhhccccchheEEEecchhhhhChHHHHHHHHhCcccccCCccCCCCCCCcCHHHHhhc
Confidence 4677899999984333 344 666654 68999974 111111 122111 1234566663 299999999
Q ss_pred ceEE--ecC-C-----C-------CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Q 044166 119 AAHF--TTD-S-----D-------QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVA 183 (369)
Q Consensus 119 ~P~~--~~~-~-----~-------~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~ 183 (369)
+|+| .+. . . ++.||||+.+... ..+.....++|+.||++||++++|++++++++++++.+++++
T Consensus 91 ~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~-~~~~~~~~~~i~~lg~i~g~~~~A~~li~~~~~~l~~i~~~~ 169 (342)
T cd01139 91 KPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFR-QKPLKNTTPSMRLLGKALGREERAEEFIEFYQERIDRIRDRL 169 (342)
T ss_pred CCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCC-CchhhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9954 221 1 1 4779999987421 112234678999999999999999999999999999999998
Q ss_pred hCCCCCCCCEEEEEeeeCC--EEEE-eCCChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCC
Q 044166 184 AGKTKPFKPIVAWMEFYNG--VWSF-TKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYT 260 (369)
Q Consensus 184 ~~~~~~~kp~V~~~~~~~~--~~~~-~g~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~ 260 (369)
++.. .++|+|++....++ .+.. .++++.+++++.||++|++.+.. ..++..+|+|+|+++ |||+||+....
T Consensus 170 ~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~li~~aG~~nv~~~~~---~~~~~~vs~E~i~~~--nPD~I~~~~~~ 243 (342)
T cd01139 170 AKIN-EPKPKVFIELGAGGPEECCSTYGNGNWGELVDAAGGDNIADGLI---PGTSGELNAEYVIAA--NPEIIIATGGN 243 (342)
T ss_pred hccC-CCCCeEEEEecCCCchhhccCCCCccHHHHHHHhCCEEeccccc---CCCccccCHHHHhhc--CCCEEEEeCCc
Confidence 7762 35889998654322 2333 34788899999999999997431 134678999999998 99999985321
Q ss_pred CC--CC-------CCC---hhhHHh-hcccCCCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCC
Q 044166 261 LE--PA-------NYT---QSTFLE-NIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFP 327 (369)
Q Consensus 261 ~~--~~-------~~~---~~~~~~-~~~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhP 327 (369)
.. +. ... .+.+.+ ..++|.|++++||||||||.++. +++. ++.. -..+++|+++|||
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~l~AVkn~rV~~~~~--------~~~~-~p~~-~~~~~~la~~l~p 313 (342)
T cd01139 244 WAKDPSGVSLGPDGTTADAKESLLRALLKRPGWSSLQAVKNGRVYALWH--------QFYR-SPYN-FVALEAFAKWLYP 313 (342)
T ss_pred ccccCcccccCCCcchHHHHHHHHHHHhcCCCcccCccccCCcEEEEeh--------hhcC-CHHH-HHHHHHHHHHhCh
Confidence 11 00 000 112222 33479999999999999999853 2332 3332 3458899999999
Q ss_pred C--Cc-----cccccccccc
Q 044166 328 T--GN-----YTITYFRNIA 340 (369)
Q Consensus 328 e--~~-----~~~~yy~~l~ 340 (369)
+ .+ ....||+.++
T Consensus 314 ~~f~~~~~~~~~~~~y~~~~ 333 (342)
T cd01139 314 ELFKDLDPEATLQEFHRQFL 333 (342)
T ss_pred hhcccCChhHHHHHHHHhhc
Confidence 9 22 2367888876
No 6
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=99.96 E-value=2.9e-28 Score=229.48 Aligned_cols=248 Identities=13% Similarity=0.021 Sum_probs=177.0
Q ss_pred eeEEEecCceEEEec-CCccc-cccCCCCcEEEecC-CCcCcHHHHhhhcCCcccccCCC--chhhhccCceEE--ec-C
Q 044166 54 IKSFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTS-ESVASGCVLKLYQGGEIGLVNKS--EPLQFSQYAAHF--TT-D 125 (369)
Q Consensus 54 ~~~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~-~~~~~p~~~~~~~~g~i~~~G~~--n~E~i~~l~P~~--~~-~ 125 (369)
..+|+.+++|||+.+ ..+++ .+||..++|||++. .....|.+.+.+ ++++.+|.. |+|+|++++|++ .+ .
T Consensus 11 ~vtl~~~p~RIv~l~~~~~~~l~~Lg~~~~ivg~~~~~~~~~p~~~~~~--~~~~~~g~~~~n~E~I~~l~PDlIi~~~~ 88 (284)
T cd01148 11 SVTFDKAPQRVVSNDQNTTEMMLALGLQDRMVGTAGIDNKDLPELKAKY--DKVPELAKKYPSKETVLAARPDLVFGGWS 88 (284)
T ss_pred EEEecCCCcEEEEcCCCHHHHHHHcCCccceEEEecCCCCcChhhHHHH--hhCcccCCCCCCHHHHhcCCCCEEEEecc
Confidence 356788899999954 45677 99999999999985 212346665543 235555543 999999999944 22 1
Q ss_pred --CC----------CCCCceEEEcCCCCC-----CchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 044166 126 --SD----------QPQACNFANFAPFGE-----DGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTK 188 (369)
Q Consensus 126 --~~----------~~~gIpvv~~~~~~e-----~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~ 188 (369)
.. ++.||||+.+..+.+ .+.-...++++++|++||+|++|++++++++++++.+++++++..
T Consensus 89 ~~~~~~~~~~~~~L~~~gipv~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~e~~A~~~i~~~~~~~~~v~~~~~~~~- 167 (284)
T cd01148 89 YGFDKGGLGTPDSLAELGIKTYILPESCGQRRGEATLDDVYNDIRNLGKIFDVEDRADKLVADLKARLAEISAKVKGDG- 167 (284)
T ss_pred cccCCCCCCCHHHHHHCCCeEEECchhccCCCCCCCHHHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhhccCC-
Confidence 11 367999998864322 222234578999999999999999999999999999999987763
Q ss_pred CCCCEEEEEeeeCCEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCC
Q 044166 189 PFKPIVAWMEFYNGVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYT 267 (369)
Q Consensus 189 ~~kp~V~~~~~~~~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~ 267 (369)
++|+|++....++.+++.| +++.+.|++.+|++|++.+. +.++..+|+|+|+++ |||+||...+.. .. ..
T Consensus 168 -~~~~v~~~~~~~~~~~~~g~~s~~~~ll~~~G~~n~~~~~----~~~~~~is~E~l~~~--~PD~i~~~~~~~-~~-~~ 238 (284)
T cd01148 168 -KKVAVFVYDSGEDKPFTSGRGGIPNAIITAAGGRNVFADV----DESWTTVSWETVIAR--NPDVIVIIDYGD-QN-AA 238 (284)
T ss_pred -CCceEEEEECCCCCceeecccchHHHHHHHhCCeeecccC----cCCccccCHHHHHHh--CCCEEEEEecCC-Cc-hh
Confidence 5788887654334577877 89999999999999998742 134668999999998 999998753211 10 00
Q ss_pred hhhHHhhcccCCCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHH
Q 044166 268 QSTFLENIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLT 322 (369)
Q Consensus 268 ~~~~~~~~~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla 322 (369)
........++|.|+.++||||||||.++. ++|..++..+.. +++||
T Consensus 239 ~~~~~~~~~~p~~~~l~AVk~~~V~~~~~--------~~~~~~~~~~~~-~~~la 284 (284)
T cd01148 239 EQKIKFLKENPALKNVPAVKNNRFIVLPL--------AEATPGIRNVDA-IEKLA 284 (284)
T ss_pred HHHHHHHHhCcccccCChhhcCCEEEEeh--------hHcCCCchHHHH-HHhhC
Confidence 11122334579999999999999999964 234445544433 55553
No 7
>PRK14048 ferrichrome/ferrioxamine B periplasmic transporter; Provisional
Probab=99.96 E-value=1.6e-28 Score=240.12 Aligned_cols=269 Identities=12% Similarity=0.085 Sum_probs=176.7
Q ss_pred eEEEecCceEEEecCCccc-cccCCCCcEE---EecCCCc-CcH----HHHhhh-cCCccccc--CC---CchhhhccCc
Q 044166 55 KSFVIPMSNYSVDTDFFPG-KLLGLLSSMK---GMTSESV-ASG----CVLKLY-QGGEIGLV--NK---SEPLQFSQYA 119 (369)
Q Consensus 55 ~~i~~Pv~RIv~~~~~~~~-~~Lg~~d~Iv---Gv~~~~~-~~p----~~~~~~-~~g~i~~~--G~---~n~E~i~~l~ 119 (369)
.+|+.|++|||++.+...+ ..|+..|+++ |+..+.. ..+ .+.+.+ ...+++.+ |. .|+|+|++++
T Consensus 42 V~ip~~p~RIv~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~v~~G~~~~pn~E~Ilal~ 121 (374)
T PRK14048 42 VTIPAPPKAVLLGSGFNLIALSLIHPDPVSLLAGWSGDMKGDNPEIYESFLRKFPELADVPLIDDGSGPGLSFETILTLK 121 (374)
T ss_pred EecCCCCcEEEecCcHHHHHHHhhcccccceEEEecchhhhhChHHHHHHHHhCccHhhCCccCCCCCCCcCHHHHhhcC
Confidence 5677789999984433344 6566666554 4442211 112 222221 11234444 53 3999999999
Q ss_pred eEE--ecCC--------C-----CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHh
Q 044166 120 AHF--TTDS--------D-----QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAA 184 (369)
Q Consensus 120 P~~--~~~~--------~-----~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~ 184 (369)
|+| .+.. + ++.||||+++.. ...+.-...++++++|++||+|++|+++++++++++++++++++
T Consensus 122 PDLVi~~~~~~~~~~~~~~~~~L~~~Gipvv~~~~-~~~~~~~~~~~i~~lG~i~g~ee~A~~li~~~~~~i~~v~~~~~ 200 (374)
T PRK14048 122 ADLAILANWQADTEAGQRAIEYLESIGVPVIVVDF-NNEALKNTPDNMRLLGKVFEREEQAEDFARFYEERLARIRDRVA 200 (374)
T ss_pred CCEEEecCcccccccchhHHHHHHHCCCCEEEEeC-CcchhhhhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 955 2211 1 478999998742 11112235689999999999999999999999999999999988
Q ss_pred CCCCCCCCEEEEEeeeC--CEEEEeCCChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCC
Q 044166 185 GKTKPFKPIVAWMEFYN--GVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLE 262 (369)
Q Consensus 185 ~~~~~~kp~V~~~~~~~--~~~~~~g~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~ 262 (369)
+++. ++|+|++....+ +..++.|.++.+++++.|||+|++.+.. . ..+..+|+|+|+++ |||+||+......
T Consensus 201 ~~~~-~~~~v~~~~~~~~~~~~~~~g~~~~~~~i~~aG~~Nv~~~~~--~-~~~~~vs~E~l~~~--nPDvIi~~~~~~~ 274 (374)
T PRK14048 201 KHSE-PGPTVLMEAFPAADRCCWAYGRGGLGEFIALTGSRNIAEGAL--P-RPGGMMNAEAIMAE--NPDVYIATSSPGG 274 (374)
T ss_pred cCCC-CCCEEEEEecCCCCceEEeeCCCcHHHHHHHhCCeeeccccc--C-CCCCccCHHHHHhh--CCCEEEEeCcCcc
Confidence 7643 478998754322 2345556333578999999999987421 1 12357999999999 9999987532100
Q ss_pred -CCCC------C---h-hhHHhhcccCCCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCCC--C
Q 044166 263 -PANY------T---Q-STFLENIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPT--G 329 (369)
Q Consensus 263 -~~~~------~---~-~~~~~~~~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhPe--~ 329 (369)
.... . . +.+.+..++|.|++++||||||||.+. .|+..++..+ ..+++||++|||| .
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~l~AVkn~rVy~~~---------~~~~~~p~~~-~~~~~lAk~lyPe~f~ 344 (374)
T PRK14048 275 KYSGFSIGPGVSAEEAETTLANVVDKPVMASIAAVRDGRVHGLW---------NFFNAVPLNI-VAAEAFASWLRPELFA 344 (374)
T ss_pred cCCccccCCCCCHHHHHHHHHHHhcCCCcccCcccccCeEEEEe---------ccccCCHHHH-HHHHHHHHHhCHhhcc
Confidence 0000 0 1 122233457999999999999999883 2555555544 3467899999999 2
Q ss_pred c-----cccccccccc
Q 044166 330 N-----YTITYFRNIA 340 (369)
Q Consensus 330 ~-----~~~~yy~~l~ 340 (369)
+ ...+||+++.
T Consensus 345 d~d~~~~~~~~y~~f~ 360 (374)
T PRK14048 345 DIDPAATLAEINRRFA 360 (374)
T ss_pred CCCHHHHHHHHHHhhc
Confidence 2 2357898877
No 8
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=99.96 E-value=8.6e-28 Score=224.62 Aligned_cols=248 Identities=14% Similarity=0.035 Sum_probs=172.5
Q ss_pred eEEEecCceEEEe-cCCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCCC---chhhhccCceEE-e-cCCC
Q 044166 55 KSFVIPMSNYSVD-TDFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKS---EPLQFSQYAAHF-T-TDSD 127 (369)
Q Consensus 55 ~~i~~Pv~RIv~~-~~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~~---n~E~i~~l~P~~-~-~~~~ 127 (369)
.+|+.|++|||+. .+..++ .+||+ +|||++... ..|...+.+...+++.+|.. |+|+|++++|+| + +...
T Consensus 6 vtl~~~p~RIv~l~~~~~~~l~~Lg~--~ivgv~~~~-~~p~~~~~~~~~~~~~ig~~~~~n~E~i~al~PDlvi~~~~~ 82 (270)
T cd01140 6 TKVPKNPEKVVVFDVGALDTLDALGV--KVVGVPKSS-TLPEYLKKYKDDKYANVGTLFEPDLEAIAALKPDLIIIGGRL 82 (270)
T ss_pred eeccCCCceEEEecccchhHHHHcCC--ceEEeeCCC-CCchHHHhccccccccCCCCCCCCHHHHhcCCCCEEEECCcc
Confidence 5688899999995 455677 99998 899998522 33555555443345666643 999999999955 2 2211
Q ss_pred --------CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEee
Q 044166 128 --------QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEF 199 (369)
Q Consensus 128 --------~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~ 199 (369)
+..+++++.+.. ..+.....++++++|++||++++|++++++++++++.+++++.. .+|++|++.
T Consensus 83 ~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~i~~lg~~~g~~~~a~~l~~~~~~~~~~i~~~~~~---~~~~~v~~~-- 155 (270)
T cd01140 83 AEKYDELKKIAPTIDLGADL--KNYLESVKQNIETLGKIFGKEEEAKELVAEIDASIAEAKSAAKG---KKKALVVLV-- 155 (270)
T ss_pred HHHHHHHHHhCCeeEEecCc--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcc---CCceEEEEE--
Confidence 344566665431 11223456789999999999999999999999999999988733 246776654
Q ss_pred eCCEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccC
Q 044166 200 YNGVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAA 278 (369)
Q Consensus 200 ~~~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~ 278 (369)
.++.+++.| +++.++|+++||++|++.+.. ...++.++|+|+|+++ |||+||........ ..+.....+.+.+|
T Consensus 156 ~~~~~~~~g~~~~~~~l~~~~G~~nv~~~~~--~~~~~~~is~E~l~~~--~pD~Ii~~~~~~~~-~~~~~~~~~~~~~p 230 (270)
T cd01140 156 NGGKLSAFGPGSRFGWLHDLLGFEPADENIK--ASSHGQPVSFEYILEA--NPDWLFVIDRGAAI-GAEGSSAKEVLDND 230 (270)
T ss_pred cCCeEEEecCCChhhHHHHHhCCccCCcccC--ccccccccCHHHHHhh--CCCEEEEEeCCccc-cccchhHHHHhcCH
Confidence 335688887 899999999999999987432 1235678999999998 99999874321110 00111223334579
Q ss_pred CCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhC
Q 044166 279 DKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALF 326 (369)
Q Consensus 279 ~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lh 326 (369)
.|++++||||||||.++.. .|+..+ ..+ ..++.|++.++
T Consensus 231 ~~~~l~AVk~~rv~~~~~~-------~~~~~~-~~~-~~~~~~~~~~~ 269 (270)
T cd01140 231 LVKNTTAWKNGKVIYLDPD-------LWYLSG-GGL-ESLKQMIDDLK 269 (270)
T ss_pred HHhhccHhhcCcEEEECcc-------ceeecC-ccH-HHHHHHHHHhh
Confidence 9999999999999999542 344433 334 55777777664
No 9
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=99.96 E-value=5.1e-28 Score=224.89 Aligned_cols=228 Identities=15% Similarity=0.140 Sum_probs=160.8
Q ss_pred EEecCceEEEe-cCCccc-cccCCCCcEEEecC-C-------Cc-CcHHHHhhhcCCcccccCC------CchhhhccCc
Q 044166 57 FVIPMSNYSVD-TDFFPG-KLLGLLSSMKGMTS-E-------SV-ASGCVLKLYQGGEIGLVNK------SEPLQFSQYA 119 (369)
Q Consensus 57 i~~Pv~RIv~~-~~~~~~-~~Lg~~d~IvGv~~-~-------~~-~~p~~~~~~~~g~i~~~G~------~n~E~i~~l~ 119 (369)
|+.|++|||++ ...+++ .+||+.++|||++. . +. ..|.+.+ ++.+|. .|+|+|++++
T Consensus 1 i~~~p~RIv~l~~~~~e~l~~Lg~~~~ivg~~~~~~~~~~~~~~~~~~~~~~------~~~vg~~g~~~~~n~E~i~~l~ 74 (262)
T cd01147 1 VPKPVERVVAAGPGALRLLYALAAPDKIVGVDDAEKSDEGRPYFLASPELKD------LPVIGRGGRGNTPNYEKIAALK 74 (262)
T ss_pred CCCCccEEEEcCCChhhhhhhhcCCceEEEeccccccccCCccccCChhHhh------CCccccCCCCCCCCHHHHHhcC
Confidence 35689999994 456677 99999999999974 2 11 0233332 233333 3999999999
Q ss_pred eEEe--cC---C----C---CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 044166 120 AHFT--TD---S----D---QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKT 187 (369)
Q Consensus 120 P~~~--~~---~----~---~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~ 187 (369)
|+|+ +. . + +.+||||+.+... .+..+..++++++|++||++++|++++++++++++++++++++..
T Consensus 75 PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~--~~~~~~~~~i~~lg~~~g~~~~a~~~~~~~~~~~~~i~~~~~~~~ 152 (262)
T cd01147 75 PDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG--DSLEDTPEQIRLLGKVLGKEERAEELISFIESILADVEERTKDIP 152 (262)
T ss_pred CCEEEEecCCccchhHHHHHHhhCCCEEEEecC--CchHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9552 21 1 1 2389999887532 123456789999999999999999999999999999999988765
Q ss_pred CCCCCEEEEEeee-CCEEEE--eCCChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCC
Q 044166 188 KPFKPIVAWMEFY-NGVWSF--TKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPA 264 (369)
Q Consensus 188 ~~~kp~V~~~~~~-~~~~~~--~g~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~ 264 (369)
..++|+|++.... .+.+.+ .+.++. ++|+.+|++|++.+. ...++.++|+|+|+++ |||+||+......
T Consensus 153 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~i~~~G~~n~~~~~---~~~~~~~is~E~l~~~--~pD~i~~~~~~~~-- 224 (262)
T cd01147 153 DEEKPTVYFGRIGTKGAAGLESGLAGSI-EVFELAGGINVADGL---GGGGLKEVSPEQILLW--NPDVIFLDTGSFY-- 224 (262)
T ss_pred cccCCeEEEeecccCCCCCCcCCCCCcH-HHHHHhCCccccccc---ccCCCcccCHHHHhhh--CCCEEEEcCCccc--
Confidence 4357898876531 122222 223444 899999999998743 2235679999999998 9999997542111
Q ss_pred CCChhhHHh-hcccCCCccccceeeCcEEEeccCCCCCcCcccccc
Q 044166 265 NYTQSTFLE-NIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDG 309 (369)
Q Consensus 265 ~~~~~~~~~-~~~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~ 309 (369)
. ...+ ...+|.|++++||||||||.+ |.+.+.|+..
T Consensus 225 -~---~~~~~l~~~p~~~~l~AVk~~~V~~~-----~~~~~~w~~~ 261 (262)
T cd01147 225 -L---SLEGYAKNRPFWQSLKAVKNGRVYLL-----PALPFNWYDT 261 (262)
T ss_pred -c---chhhhhcCcchhhccchhhcCcEeec-----cCCCcccccC
Confidence 1 1112 224799999999999999998 5555667653
No 10
>COG0614 FepB ABC-type Fe3+-hydroxamate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=1.5e-27 Score=227.62 Aligned_cols=249 Identities=16% Similarity=0.107 Sum_probs=179.0
Q ss_pred EEEecCceEEEec-CCccc-cccCCCCcEEEec--C-CCcCcHHHHhhhcCCccccc---CCCchhhhccCceEE--ecC
Q 044166 56 SFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMT--S-ESVASGCVLKLYQGGEIGLV---NKSEPLQFSQYAAHF--TTD 125 (369)
Q Consensus 56 ~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~--~-~~~~~p~~~~~~~~g~i~~~---G~~n~E~i~~l~P~~--~~~ 125 (369)
.+..+++|||++. ..... .+||....+++.. . .....|...+. .++... +..|+|+|++|+|++ ...
T Consensus 47 ~~~~~p~RIv~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~n~E~i~~lkPDlIi~~~ 123 (319)
T COG0614 47 TIPAPPERIVSLGPSATEILLALGVKPVGVADSVGVSYYSYYPKLPKL---LKVPTVGVGTDPNLEKIVALKPDLIIASS 123 (319)
T ss_pred eCCCCcceEEEeccchHHHHHHhcCccccccccccccccchhhhcccc---ceecccCCCCCCCHHHhhhcCCCEEEEec
Confidence 4555799999954 34555 8899877776542 1 11122322222 122222 233999999999955 222
Q ss_pred C--C------CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEE
Q 044166 126 S--D------QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWM 197 (369)
Q Consensus 126 ~--~------~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~ 197 (369)
. + .+.|+||+.+... +.....++++.+|.++|+|++|++++++++++++++++++.+.. ++|+|++.
T Consensus 124 ~~~~~~~~~~~~~~~pvv~~~~~---~~~~~~~~i~~lg~~~g~e~~A~~li~~~~~~~~~~~~~~~~~~--~~~~v~~~ 198 (319)
T COG0614 124 SSQDDLIYKLLSLGAPVVVVDYG---SLDDIKEQIRLLGKALGKEEKAEELIAEYDQRLAALRARTADVK--GKPTVYVL 198 (319)
T ss_pred ccchhHHHHHHhcCCCEEEECCc---chhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcEEEEE
Confidence 1 1 5789999988543 34457789999999999999999999999999999999999875 38999998
Q ss_pred eeeCCEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhc-
Q 044166 198 EFYNGVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENI- 275 (369)
Q Consensus 198 ~~~~~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~- 275 (369)
...++.+++.| +|+.++++++|||.|++.+... .+...+|.|.+.++ |||+||+....... . ...+.+
T Consensus 199 ~~~~~~~~~~g~~s~~~~~l~~aG~~n~~~~~~~---~~~~~vs~E~v~~~--~pDvIi~~~~~~~~----~-~~~~~~~ 268 (319)
T COG0614 199 RSPGGGLYTAGGNSFIGDILELAGGKNIAADEEG---PGGAQVSPEQILAA--DPDVIILTGSGGSD----P-ELADELK 268 (319)
T ss_pred EccCCceEEEcCCCchHHHHHHhCCCCccccccC---CCCCccCHHHHHhc--CCCEEEEecCCCCc----h-hhhhhhc
Confidence 87666577777 9998889999999999995431 22279999999998 99999986432111 0 122233
Q ss_pred ccCCCccccceeeCcEEEeccCCCCCcCcccccccCCCH-HHHHHHHHHHhCCCC
Q 044166 276 DAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQP-QLVLADLTEALFPTG 329 (369)
Q Consensus 276 ~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p-~~vL~dla~~lhPe~ 329 (369)
.+|.|++++||||||||.++.. .|+..++... ...+++|++++||+.
T Consensus 269 ~~~~w~~l~AVk~~rVy~~~~~-------~~~~~~~~~~~~~~l~~l~~~l~~~~ 316 (319)
T COG0614 269 NNPLWKNLKAVKNGRVYVLPDD-------VWLAGPGPSAAILGLEDLAKLLYPEA 316 (319)
T ss_pred cCchhhhhhhhhcCcEEecCcc-------ccccCCCchhHHHHHHHHHHHhcccc
Confidence 4799999999999999998542 1443333333 467899999999983
No 11
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=99.95 E-value=6.6e-27 Score=215.46 Aligned_cols=228 Identities=17% Similarity=0.107 Sum_probs=164.2
Q ss_pred ceEEEec-CCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCC---CchhhhccCceEE--ecCC--C-----
Q 044166 62 SNYSVDT-DFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNK---SEPLQFSQYAAHF--TTDS--D----- 127 (369)
Q Consensus 62 ~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~---~n~E~i~~l~P~~--~~~~--~----- 127 (369)
+|||+.+ ...++ .+||..++|||++....+ |...+ +++.+|. .|+|+|++++|+| .+.. .
T Consensus 1 ~rVv~l~~~~~~~l~~lg~~~~ivg~~~~~~~-~~~~~-----~~~~vg~~~~~n~E~i~~l~PDlIi~~~~~~~~~~~~ 74 (245)
T cd01144 1 MRIVSLAPSATELLYALGLGDQLVGVTDYCDY-PPEAK-----KLPRVGGFYQLDLERVLALKPDLVIAWDDCNVCAVVD 74 (245)
T ss_pred CceEEeCchHHHHHHHcCCCCeEEEEeccCCC-CHHHh-----cCCccCCcCCCCHHHHHhCCCCEEEEecCCCHHHHHH
Confidence 6899854 34567 899999999999842222 22222 2344453 4999999999954 2221 1
Q ss_pred --CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEE
Q 044166 128 --QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWS 205 (369)
Q Consensus 128 --~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~ 205 (369)
++.|||+++... .++.+..+|++.+|++||+|++|++++++++++++++++++++.. +|+|++... .+.++
T Consensus 75 ~l~~~gi~v~~~~~---~~~~~~~~~~~~lg~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~-~~~~~ 147 (245)
T cd01144 75 QLRAAGIPVLVSEP---QTLDDILADIRRLGTLAGRPARAEELAEALRRRLAALRKQYASKP---PPRVFYQEW-IDPLM 147 (245)
T ss_pred HHHHcCCcEEEeCC---CCHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHhcCCC---CCeEEEEec-CCCce
Confidence 468999887642 345567899999999999999999999999999999999987753 678876543 35577
Q ss_pred EeCCChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccCCCccccc
Q 044166 206 FTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKSCFAF 285 (369)
Q Consensus 206 ~~g~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~~~~~l~A 285 (369)
+.|.++.+++++.+|+.|++.+. +.++.++|+|+++++ |||+||+.....+ . ...+...+|.|++++|
T Consensus 148 ~~g~~~~~~~l~~~G~~n~~~~~----~~~~~~is~E~l~~~--~pD~i~~~~~~~~---~---~~~~l~~~~~~~~l~A 215 (245)
T cd01144 148 TAGGDWVPELIALAGGVNVFADA----GERSPQVSWEDVLAA--NPDVIVLSPCGFG---F---TPAILRKEPAWQALPA 215 (245)
T ss_pred ecCcccHHHHHHHcCCEeccCCC----CCCCcEecHHHHHhh--CCCEEEEcCCCcc---c---hhhHHhhcccccccch
Confidence 77733999999999999999743 134679999999998 9999998642111 0 1222334799999999
Q ss_pred eeeCcEEEeccCCCCCcCccccc-ccCCCHHHHHHHHHH
Q 044166 286 LTNQSLWRFDKRNQNSLALDWFD-GAVSQPQLVLADLTE 323 (369)
Q Consensus 286 VkngrVy~~~~~~~p~g~~~~~~-~~~~~p~~vL~dla~ 323 (369)
|||||||.++. .||. +++..+ ..+++|||
T Consensus 216 Vk~grV~~l~~--------~~~~~~~~~~~-~~~~~la~ 245 (245)
T cd01144 216 VRNGRVYAVDG--------NWYFRPSPRLV-DGLEQLAA 245 (245)
T ss_pred hhcCCEEEECC--------ccccCCCcHHH-HHHHHHhC
Confidence 99999999953 2443 333334 34667764
No 12
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=99.95 E-value=5.4e-27 Score=217.61 Aligned_cols=220 Identities=12% Similarity=0.026 Sum_probs=157.2
Q ss_pred cCceEEEe-cCCccc-cccCCCCcEEEecCCCcCcHHHHhhhc-CCcccccCCC---chhhhccCceEE-e-cCC---C-
Q 044166 60 PMSNYSVD-TDFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQ-GGEIGLVNKS---EPLQFSQYAAHF-T-TDS---D- 127 (369)
Q Consensus 60 Pv~RIv~~-~~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~-~g~i~~~G~~---n~E~i~~l~P~~-~-~~~---~- 127 (369)
|++|||+. +++.++ ..||. ++||++......+.+..... ..+++.+|.. |+|+|++++|++ + ... +
T Consensus 2 ~p~rIv~~~~~~~~~l~~Lg~--~~vgv~~~~~~~~~~~~~~~~~~~~~~~g~~~~~n~E~i~~l~PDlii~~~~~~~~~ 79 (256)
T cd01146 2 KPQRIVALDWGALETLLALGV--KPVGVADTAGYKPWIPEPALPLEGVVDVGTRGQPNLEAIAALKPDLILGSASRHDEI 79 (256)
T ss_pred CCCeEEEeccHhHHHHHHcCC--eeeeeeccccccccccccccccCCCeeccCCCCCCHHHHHhcCCCEEEeecccchhH
Confidence 78999995 445677 88885 58999841111122222111 1355666643 999999999955 2 221 1
Q ss_pred ----CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeC-C
Q 044166 128 ----QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYN-G 202 (369)
Q Consensus 128 ----~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~-~ 202 (369)
++ .+|++++... .+..+..++++++|++||++++|++++++++++++++++++++. ++|+|++....+ +
T Consensus 80 ~~~l~~-~~p~v~~~~~--~~~~~~~~~i~~lg~~~g~~~~a~~~~~~~~~~~~~i~~~~~~~---~~~~v~~~~~~~~~ 153 (256)
T cd01146 80 YDQLSQ-IAPTVLLDSS--PWLAEWKENLRLIAKALGKEEEAEKLLAEYDQRLAELRQKLPDK---GPKPVSVVRFSDAG 153 (256)
T ss_pred HHHHHh-hCCEEEecCC--CcHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhhc---cCCcEEEEEEecCC
Confidence 23 3577766422 14456788999999999999999999999999999999998875 246666555444 6
Q ss_pred EEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccCCCc
Q 044166 203 VWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKS 281 (369)
Q Consensus 203 ~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (369)
.+++.| ++|.+++++.|||+|++.+.. ..+.++..+|+|+|+++ |||+||.... . ......+..++|.|+
T Consensus 154 ~~~~~~~~~~~~~~i~~aG~~n~~~~~~-~~~~~~~~is~E~i~~~--nPDvIi~~~~----~--~~~~~~~~~~~p~~~ 224 (256)
T cd01146 154 SIRLYGPNSFAGSVLEDLGLQNPWAQET-TNDSGFATISLERLAKA--DADVLFVFTY----E--DEELAQALQANPLWQ 224 (256)
T ss_pred eEEEecCCchHHHHHHHhCCCCCccccc-cCCCceeecCHHHhccC--CCCEEEEEcc----C--chhhhhhhccChhhh
Confidence 788877 899999999999999998432 11245678999999998 9999997532 0 111222334479999
Q ss_pred cccceeeCcEEEecc
Q 044166 282 CFAFLTNQSLWRFDK 296 (369)
Q Consensus 282 ~l~AVkngrVy~~~~ 296 (369)
+++||||||||.++.
T Consensus 225 ~l~AVkn~~Vy~~~~ 239 (256)
T cd01146 225 NLPAVKNGRVYVVDD 239 (256)
T ss_pred hCcccccCcEEEeCc
Confidence 999999999999965
No 13
>PRK11411 fecB iron-dicitrate transporter substrate-binding subunit; Provisional
Probab=99.94 E-value=7.4e-26 Score=215.29 Aligned_cols=244 Identities=11% Similarity=0.039 Sum_probs=172.3
Q ss_pred eEEEecCceEEEe-cCCccc-cccCCCCcEEEecC--CC-cCcHHHHhhhcCCcccccCCC---chhhhccCceEEe-c-
Q 044166 55 KSFVIPMSNYSVD-TDFFPG-KLLGLLSSMKGMTS--ES-VASGCVLKLYQGGEIGLVNKS---EPLQFSQYAAHFT-T- 124 (369)
Q Consensus 55 ~~i~~Pv~RIv~~-~~~~~~-~~Lg~~d~IvGv~~--~~-~~~p~~~~~~~~g~i~~~G~~---n~E~i~~l~P~~~-~- 124 (369)
.+++.|++|||+. .++++. .+||+. .+|++. .+ ...|.+.+.+. .++.+|.. |+|+|++++|+|+ .
T Consensus 33 v~~~~~p~RIvsl~~~~~e~l~aLG~~--~vg~~~~~~~~~~~~~~~~~~~--~~~~vG~~~~~n~E~I~al~PDLIi~~ 108 (303)
T PRK11411 33 FTLEKTPQRIVVLELSFVDALAAVGVS--PVGVADDNDAKRILPEVRAHLK--PWQSVGTRSQPSLEAIAALKPDLIIAD 108 (303)
T ss_pred EECCCCCCeEEEecccchHHHHHcCCc--eeeeeCCCCcccCchhhHHHcC--CCcccCCCCCCCHHHHHhCCCCEEEec
Confidence 5677889999994 455677 889986 488873 11 12355655432 35566643 9999999999653 2
Q ss_pred CC-C-------CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEE
Q 044166 125 DS-D-------QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAW 196 (369)
Q Consensus 125 ~~-~-------~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~ 196 (369)
.. . ++. +||+++... ..+..+..++++.+|.+||+|++|++++++++++++.+++++. ++++|++
T Consensus 109 ~~~~~~~~~~L~~~-~pv~~~~~~-~~~~~~~~~~i~~lg~i~g~e~~a~~~i~~~~~~l~~~~~~i~-----~~~~v~~ 181 (303)
T PRK11411 109 SSRHAGVYIALQKI-APTLLLKSR-NETYQENLQSAAIIGEVLGKKREMQARIEQHKERMAQFASQLP-----KGTRVAF 181 (303)
T ss_pred ccccHHHHHHHHHh-CCEEEecCC-CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcC-----CCCceEE
Confidence 21 1 233 599877421 1233445678999999999999999999999999999987653 3567887
Q ss_pred EeeeCCEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhc
Q 044166 197 MEFYNGVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENI 275 (369)
Q Consensus 197 ~~~~~~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~ 275 (369)
....++.+++.| +|+.+.+++++|++|+..+ ....++.++|+|+|+++ |||+||...+. .. . ...+..
T Consensus 182 ~~~~~~~~~~~g~~s~~~~~l~~~G~~~~~~~---~~~~~~~~vs~E~l~~~--nPD~I~~~~~~-~~---~--~~~~~~ 250 (303)
T PRK11411 182 GTSREQQFNLHSPESYTGSVLAALGLNVPKAP---MNGAAMPSISLEQLLAL--NPDWLLVAHYR-QE---S--IVKRWQ 250 (303)
T ss_pred EEEcCCceEEEcCCchHHHHHHHcCCCCCccc---ccCccceeeCHHHHhhc--CCCEEEEEecC-Cc---h--HHHHHh
Confidence 765555677887 8999999999999998542 12245789999999998 99999875321 11 1 111223
Q ss_pred ccCCCccccceeeCcEEEeccCCCCCcCcccccc--cCCCHHHHHHHHHHHhCCC
Q 044166 276 DAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDG--AVSQPQLVLADLTEALFPT 328 (369)
Q Consensus 276 ~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~--~~~~p~~vL~dla~~lhPe 328 (369)
.+|.|++++||||||||.++.. +|.+ ++.....++++|.++||+.
T Consensus 251 ~~p~w~~l~AVkngrV~~l~~~--------~~~~~~~~~~~~~~a~~l~~~~~~~ 297 (303)
T PRK11411 251 QDPLWQMLTAAKKQQVASVDSN--------TWARMRGIFAAERIAKDTVKIFHHQ 297 (303)
T ss_pred hChHHHhCceeecCCEEEeChh--------hhhhcCCHHHHHHHHHHHHHHHhhc
Confidence 4799999999999999999642 3332 2334455677888899886
No 14
>TIGR03868 F420-O_ABCperi proposed F420-0 ABC transporter, periplasmic F420-0 binding protein. This small clade of ABC-type transporter periplasmic binding protein components is found as a three gene cassette along with a permease (TIGR03869) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this periplasmic binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.94 E-value=4.4e-25 Score=208.16 Aligned_cols=246 Identities=9% Similarity=-0.043 Sum_probs=161.3
Q ss_pred eEEEecCceEEEe-cCCccc-cccCCCCcEEEecC-CCcCcHHHHhhhcCCcccccCC--CchhhhccCceEE--ecC-C
Q 044166 55 KSFVIPMSNYSVD-TDFFPG-KLLGLLSSMKGMTS-ESVASGCVLKLYQGGEIGLVNK--SEPLQFSQYAAHF--TTD-S 126 (369)
Q Consensus 55 ~~i~~Pv~RIv~~-~~~~~~-~~Lg~~d~IvGv~~-~~~~~p~~~~~~~~g~i~~~G~--~n~E~i~~l~P~~--~~~-~ 126 (369)
.+|+.|++|||+. ....++ .+||..++|||++. .....+.+...+ .+++.+|. .|+|+|++++|++ +.. .
T Consensus 11 vtv~~~p~RIv~l~~~~~e~l~~Lg~~~~ivgv~~~~~~~~~~~~~~~--~~~~~~~~~~~n~E~i~~l~PDlvi~~~~~ 88 (287)
T TIGR03868 11 VTFDSAPQRVVTIKSSTTELLLALGLGDRIVGTAFPDGPVPAEWATDA--AAVPPLSERVPSPEAVLETEPDLVYAGWES 88 (287)
T ss_pred EEccCCCcEEEecCccHHHHHHHcCCccceEEEecCCCCCChhHHHHH--hcCCcccCCCCCHhHhhcCCCCEEEecccc
Confidence 5677889999994 455677 99999999999963 211112222222 12444443 3999999999944 211 0
Q ss_pred -------C-----CCCCceEEEcC-----C-CC--CCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCC
Q 044166 127 -------D-----QPQACNFANFA-----P-FG--EDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGK 186 (369)
Q Consensus 127 -------~-----~~~gIpvv~~~-----~-~~--e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~ 186 (369)
+ +++||||+++. + +. ..+.....+.|+++|++||+|++|+++++++++++++++.+.+
T Consensus 89 ~~~~~~~~~~~~l~~~gipv~~~p~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~e~~A~~~i~~~~~~l~~i~~~~~-- 166 (287)
T TIGR03868 89 NLTAEGAGERADLASLGVNTYVAPSACKEDGYQPDPLTFDDVFAEITEVGTIFDVPDAAASLVAEQRAQLAAIEPDDR-- 166 (287)
T ss_pred ccCCCCCCCHHHHHHCCCeEEECccccccccCCCCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhccC--
Confidence 1 47899998752 1 11 1123345678999999999999999999999999999875432
Q ss_pred CCCCCCEEEEEeeeCCEEEEeCCChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCC
Q 044166 187 TKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANY 266 (369)
Q Consensus 187 ~~~~kp~V~~~~~~~~~~~~~g~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~ 266 (369)
.++.+++.....+.+...+.++...+++.|||+|++.+. . .++..+|+|+|+++ |||+||+..... .
T Consensus 167 ---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~aG~~nv~~~~---~-~~~~~is~E~l~~~--nPD~Ii~~~~~~----~ 233 (287)
T TIGR03868 167 ---GLTALWYSSGSDTPFVGAGIGAPQMVMDTAGLTNIAADV---H-DTWTPMSWEAVVDA--DPDVIVLVDSAW----N 233 (287)
T ss_pred ---CceEEEEeCCCCCceeecCCChHHHHHHHhCcccccccc---C-CCccccCHHHHHHh--CCCEEEEEeCCC----C
Confidence 133344322111223333445556688999999998732 1 24678999999999 999999743211 1
Q ss_pred ChhhH-HhhcccCCCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhC
Q 044166 267 TQSTF-LENIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALF 326 (369)
Q Consensus 267 ~~~~~-~~~~~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lh 326 (369)
..+.. .+..++|.|+.++||||||||.++. + ++..++..++. ++.||+.+|
T Consensus 234 ~~~~~~~~~~~~p~~~~l~Avk~~~V~~i~~-----~---~~~~~~~~~~~-~~~la~~~~ 285 (287)
T TIGR03868 234 SAEKKIEVLESNPATSNLTAVQEQRYVVVPF-----A---ATEAGVRNVDA-AASLADQLA 285 (287)
T ss_pred CHHHHHHHHHhCCCcccCCceeCCcEEEeeh-----h---hcCCCcchhHH-HHHHHHHHh
Confidence 11122 2334579999999999999999953 1 22234444444 677888876
No 15
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=99.93 E-value=8.5e-27 Score=213.26 Aligned_cols=217 Identities=15% Similarity=0.076 Sum_probs=154.3
Q ss_pred EEEe-cCCccc-cccCCCCcEEEecCC--CcCcHHHHhhhcCCcccccCC---CchhhhccCceEEe--cC-C-C-----
Q 044166 64 YSVD-TDFFPG-KLLGLLSSMKGMTSE--SVASGCVLKLYQGGEIGLVNK---SEPLQFSQYAAHFT--TD-S-D----- 127 (369)
Q Consensus 64 Iv~~-~~~~~~-~~Lg~~d~IvGv~~~--~~~~p~~~~~~~~g~i~~~G~---~n~E~i~~l~P~~~--~~-~-~----- 127 (369)
||+. ...+++ .+||..++|||++.. +......... ..+..+|. .|+|+|++++|+|+ .. . .
T Consensus 1 Iv~l~~~~~~~l~aLG~~~~ivg~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~E~i~~l~PDlIi~~~~~~~~~~~~ 77 (238)
T PF01497_consen 1 IVSLSPSATEILLALGVPDRIVGVSGYAKYPPYYPALPE---VSVPDVGDRSSPNLEAILALKPDLIIGSSFYGQSEEIE 77 (238)
T ss_dssp EEECSHHHHHHHHHTTGGGGEEEEETTSHHSGGGGHHHH---CTSEEEEETTSB-HHHHHHT--SEEEEETTSSCHHHHH
T ss_pred eEEECcHHHHHHHHcCCCCeEEEecCCcCCchhhhhccc---cccceeCCCCCccHHHHHhCCCCEEEEeccccchHHHH
Confidence 5553 345677 999999999999851 1111111111 12344443 39999999999552 22 2 1
Q ss_pred --CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEE
Q 044166 128 --QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWS 205 (369)
Q Consensus 128 --~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~ 205 (369)
.+.|||++++...... ....++++.+|.+||+|++|++++++++++++.+++++++.. .++++++....++.++
T Consensus 78 ~~~~~~ip~~~~~~~~~~--~~~~~~i~~lg~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 153 (238)
T PF01497_consen 78 KLLEAGIPVVVFDSSSPF--DDWKEQIRQLGKALGKEDQAEALIAEYDARLDEIRKRLAKIK--PKPVVVFYSASGGAFY 153 (238)
T ss_dssp HHHHTTSEEEEESSTTCS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHT--SEEEEEEEEETTTEEE
T ss_pred HHhcccceEEEeecccch--HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhhhccC--CCceEEEEEecccccc
Confidence 4789999988643211 457789999999999999999999999999999999988873 4667776666666778
Q ss_pred EeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccCCCcccc
Q 044166 206 FTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKSCFA 284 (369)
Q Consensus 206 ~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 284 (369)
+.+ +++.+++++.+|++|++.... ..++..+|+|+|+++ |||+||+... .........+..++|.|++++
T Consensus 154 ~~~~~~~~~~~~~~~G~~n~~~~~~---~~~~~~vs~E~l~~~--npD~I~v~~~----~~~~~~~~~~l~~~p~~~~l~ 224 (238)
T PF01497_consen 154 VAGSGSYFGDLLELAGGKNVAAEAG---GGGYIPVSLEQLLAL--NPDVIFVSDR----DEDAEEALDELLNNPGWQNLK 224 (238)
T ss_dssp EECTTSHHHHHHHHTTEEESHHHHH---SSSEEEEEHHHHHHH--S-SEEEEEEC----HHCHHHHHHHHHHSHHHHTSH
T ss_pred cccCCcchhhHHHhhhccCcccccc---cccccccCHHHHHHh--CCCEEEEECC----cccchHHHHHHHhCcCcccCC
Confidence 877 999999999999999987431 356789999999998 9999998642 001112333444579999999
Q ss_pred ceeeCcEEEecc
Q 044166 285 FLTNQSLWRFDK 296 (369)
Q Consensus 285 AVkngrVy~~~~ 296 (369)
||||||||.++.
T Consensus 225 AVk~~~Vy~~~~ 236 (238)
T PF01497_consen 225 AVKNGRVYVLPS 236 (238)
T ss_dssp HHHTT-EEEE-H
T ss_pred HhHCCeEEEcCC
Confidence 999999999964
No 16
>COG4558 ChuT ABC-type hemin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=99.92 E-value=1e-23 Score=190.35 Aligned_cols=239 Identities=15% Similarity=0.061 Sum_probs=182.0
Q ss_pred cCceEEEe-cCCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCCC---chhhhccCceEE-ecCC--C----
Q 044166 60 PMSNYSVD-TDFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKS---EPLQFSQYAAHF-TTDS--D---- 127 (369)
Q Consensus 60 Pv~RIv~~-~~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~~---n~E~i~~l~P~~-~~~~--~---- 127 (369)
| +|||+. ++..++ ++||+.|+|||++....+ |... .+++++|.. +.|-|++++|++ +... +
T Consensus 42 ~-~riV~~ggtvtEiiyALGa~~~iVgrD~TS~~-P~a~-----~klP~VGy~r~LaaEGILslkPdlvi~~~~aGP~~v 114 (300)
T COG4558 42 P-ERIVALGGTVTEIIYALGAEDRIVGRDSTSSY-PAAA-----LKLPDVGYMRQLAAEGILSLKPDLVIGSEGAGPATV 114 (300)
T ss_pred c-eeEEEecccHHHHHHHhCCCceeEEeecCCcC-chHH-----hcCCccchhhhcCcccceecCCCEEEeecccCcHHH
Confidence 5 999995 455688 999999999999842222 4322 246788876 999999999955 3221 1
Q ss_pred ----CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeee-CC
Q 044166 128 ----QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFY-NG 202 (369)
Q Consensus 128 ----~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~-~~ 202 (369)
+.+|||++.+.. ..++.+...-|+.+|+++|.+++|+++...++++++++.+.++..+ ++.+|++...+ ++
T Consensus 115 l~qLraagV~vv~v~~--~~~~~~i~~~Ir~vg~~lgv~ekae~La~~~~~~l~a~~~~~~~~~--~~~~Vlfvls~~Gg 190 (300)
T COG4558 115 LDQLRAAGVPVVTVPE--QPTLDGIGTKIRQVGQALGVPEKAEKLAEQYEQRLEAVQANVAAKK--EPKKVLFVLSHGGG 190 (300)
T ss_pred HHHHHHcCCcEEEcCC--CCCHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhccccccc--ccceEEEEEecCCC
Confidence 689999998863 4567777889999999999999999999999999999988777665 23347666554 45
Q ss_pred EEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccCCCc
Q 044166 203 VWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKS 281 (369)
Q Consensus 203 ~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (369)
...+.| ++-...+|+.|||.|..... .++.++|.|.+++. |||+|++.+.+.+... ..+ ++++.|..+
T Consensus 191 ~~~vaG~~t~ad~iI~lAGG~~a~~~~-----~~yKpls~EAliaa--~PDvivm~~r~~~~~g-g~d---~L~~~PgiA 259 (300)
T COG4558 191 APLVAGKGTAADAIIELAGGVNAAAGI-----EGYKPLSAEALIAA--NPDVIVMMSRGLDGDG-GAD---ELFALPGIA 259 (300)
T ss_pred ceEeecCCccHHHHHHhccCccccccc-----ccccccCHHHHhhc--CCCEEEEecCCccccc-cHH---HHhhCcccc
Confidence 677888 67777899999997766633 46789999999987 9999998754322211 112 344469999
Q ss_pred cccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCCC
Q 044166 282 CFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPT 328 (369)
Q Consensus 282 ~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhPe 328 (369)
+.+|-||+|+|.++. +..+-.|+..|+. ++.|+..|||+
T Consensus 260 ~TpAgknkrli~~D~-------~~llgfGprtpe~-l~~L~~~ly~~ 298 (300)
T COG4558 260 QTPAGKNKRLITVDG-------NLLLGFGPRTPEV-LLRLARQLYPQ 298 (300)
T ss_pred cCccccCCcEEEECC-------CceEeeCCCCHHH-HHHHHHHhhcc
Confidence 999999999999975 3456678888866 56699999996
No 17
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=99.92 E-value=5.6e-24 Score=188.93 Aligned_cols=179 Identities=14% Similarity=0.032 Sum_probs=138.5
Q ss_pred ecCceEEEec-CCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCC---CchhhhccCceEE--ecCC-C---
Q 044166 59 IPMSNYSVDT-DFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNK---SEPLQFSQYAAHF--TTDS-D--- 127 (369)
Q Consensus 59 ~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~---~n~E~i~~l~P~~--~~~~-~--- 127 (369)
.|++|||+.. ...++ .+||..+++||++......+.+.+. +.+|. .|+|+|++++|++ .+.. .
T Consensus 1 ~~p~rVv~l~~~~~~~l~~Lg~~~~~vg~~~~~~~~~~~~~~------~~~g~~~~~n~E~l~~l~PDlii~~~~~~~~~ 74 (195)
T cd01143 1 KEPERIVSLSPSITEILFALGAGDKIVGVDTYSNYPKEVRKK------PKVGSYSNPNVEKIVALKPDLVIVSSSSLAEL 74 (195)
T ss_pred CCCceEEEcCcHHHHHHHHccCCCeEEEEecCCCCCHHHhcC------CcccCCCCCCHHHHhccCCCEEEEcCCcCHHH
Confidence 3789999954 44567 9999999999998421222334322 33443 4999999999954 3221 1
Q ss_pred ----CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCE
Q 044166 128 ----QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGV 203 (369)
Q Consensus 128 ----~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~ 203 (369)
++.|||++.+... .++.+..+|++++|++||+|++|++++++++++++++++++++. ++|+|++....++
T Consensus 75 ~~~l~~~gi~v~~~~~~--~~~~~~~~~~~~lg~~~g~~~~a~~~~~~~~~~~~~v~~~~~~~---~~~~v~~~~~~~~- 148 (195)
T cd01143 75 LEKLKDAGIPVVVLPAA--SSLDEIYDQIELIGKITGAEEEAEKLVKEMKQKIDKVKDKGKTI---KKSKVYIEVSLGG- 148 (195)
T ss_pred HHHHHHcCCcEEEeCCC--CCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEEEeCCC-
Confidence 5789999877532 24567889999999999999999999999999999999998876 4889987754444
Q ss_pred EEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEe
Q 044166 204 WSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVID 256 (369)
Q Consensus 204 ~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~ 256 (369)
+++.| +|+.+.+++.+|++|++.+. .++..+|+|+++++ |||+||+
T Consensus 149 ~~~~g~~s~~~~~l~~~G~~n~~~~~-----~~~~~is~E~l~~~--~PDvIi~ 195 (195)
T cd01143 149 PYTAGKNTFINELIRLAGAKNIAADS-----GGWPQVSPEEILKA--NPDVIIL 195 (195)
T ss_pred CeeeCCCcHHHHHHHHcCCcccccCc-----cCCCcCCHHHHHHh--CcCEEeC
Confidence 77777 89999999999999999732 34678999999999 9999974
No 18
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=99.91 E-value=1.8e-23 Score=194.60 Aligned_cols=224 Identities=14% Similarity=0.036 Sum_probs=159.6
Q ss_pred CceEEEec-CCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCC---CchhhhccCceEE-ec--CCC-----
Q 044166 61 MSNYSVDT-DFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNK---SEPLQFSQYAAHF-TT--DSD----- 127 (369)
Q Consensus 61 v~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~---~n~E~i~~l~P~~-~~--~~~----- 127 (369)
++|||+.. +..++ .+||+.+ ||++....+.+.+. +++.+|. .|+|+|++++|++ +. +..
T Consensus 17 ~~RIVsl~~~~te~l~aLG~~~--Vgv~~~~~~p~~~~------~~~~vg~~~~~n~E~il~l~PDlVi~~~~~~~~~~~ 88 (260)
T PRK03379 17 APRVITLSPANTELAFAAGITP--VGVSSYSDYPPQAK------KIEQVATWQGMNLERIVALKPDLVLAWRGGNAERQV 88 (260)
T ss_pred hCcEEEcCCcHHHHHHHcCCCc--eeeecCCCCCHHHh------cCCccCCCCCCCHHHHHhcCCCEEEEecCCCcHHHH
Confidence 44999854 45677 9999988 89884111122222 2344443 4999999999954 22 111
Q ss_pred ---CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEE
Q 044166 128 ---QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVW 204 (369)
Q Consensus 128 ---~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~ 204 (369)
++.||||+++.. .+.....++++.+|+++|++++|++++++++++++.++++++.. .||+|++... .+.+
T Consensus 89 ~~L~~~gi~v~~~~~---~~~~~~~~~i~~lg~~~g~~~~A~~li~~~~~~l~~i~~~~~~~---~~~~v~~~~~-~~~~ 161 (260)
T PRK03379 89 DQLASLGIKVMWVDA---TSIEQIANALRQLAPWSPQPEKAEQAAQSLLQQYAALKAQYADK---PKKRVFLQFG-TNPL 161 (260)
T ss_pred HHHHHCCCCEEEeCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCC---CCCeEEEEec-CCCC
Confidence 478999998742 23345678999999999999999999999999999999887764 4788987543 2345
Q ss_pred EEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccCCCccc
Q 044166 205 SFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKSCF 283 (369)
Q Consensus 205 ~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~~~~~l 283 (369)
++.| ++|.+++++.|||+|++.+. +.++..+|+|+|+++ |||+||+... . +..... .+.|+.+
T Consensus 162 ~~~g~~s~~~~~i~~aG~~N~~~~~----~~~~~~is~E~l~~~--nPDvIi~~~~----~----~~~~~~--~~~~~~~ 225 (260)
T PRK03379 162 FTSGKHSIQSQVLSLCGGENIFADS----RVPWPQVSREQVLAR--KPQAIVITGG----P----DQIPKI--KQFWGPQ 225 (260)
T ss_pred eecCCCchHHHHHHHcCCEecCCCC----CCCCCccCHHHHHHh--CCCEEEEcCc----h----hhhhHH--hhhcccc
Confidence 6767 89999999999999999742 134779999999999 9999997531 1 011111 3567765
Q ss_pred cceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhC
Q 044166 284 AFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALF 326 (369)
Q Consensus 284 ~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lh 326 (369)
.++ +||.++. +|+..+..+.-..+++|++.+|
T Consensus 226 ~~~---~v~~~~~--------~~~~~pgpr~~~~~~~la~~l~ 257 (260)
T PRK03379 226 LKI---PVIPLNS--------DWFERASPRIILAAQQLCNALS 257 (260)
T ss_pred ccc---eEEEECc--------ccccCCCchHHHHHHHHHHHHH
Confidence 554 8998864 3555444444455788999988
No 19
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=99.91 E-value=4.2e-23 Score=190.52 Aligned_cols=225 Identities=12% Similarity=-0.057 Sum_probs=148.7
Q ss_pred eEEEecCceEEEecCCcc-ccccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCCCchhhhccCceEEe--cCCC----
Q 044166 55 KSFVIPMSNYSVDTDFFP-GKLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKSEPLQFSQYAAHFT--TDSD---- 127 (369)
Q Consensus 55 ~~i~~Pv~RIv~~~~~~~-~~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~~n~E~i~~l~P~~~--~~~~---- 127 (369)
.+|+.|++|||+...... +..| .++|||++......|.+.+......+......|+|+|++++|+++ ....
T Consensus 3 v~~~~~p~RIv~~~~~~~~~~~l--g~~~Vgv~~~~~~~p~~~~~~~~~~~g~~~~~~~E~i~~l~PDlVi~~~~~~~~~ 80 (248)
T cd01138 3 VEIPAKPKRIVALSGETEGLALL--GIKPVGAASIGGKNPYYKKKTLAKVVGIVDEPNLEKVLELKPDLIIVSSKQEENY 80 (248)
T ss_pred ceecCCccEEEEecCCchhHHhc--CCceEEEecCCccChhhhhhccccccccCCCCCHHHHhccCCCEEEeCCccHHHH
Confidence 467889999998543333 3334 578999984222245544432211222212239999999999552 2221
Q ss_pred ---CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEE
Q 044166 128 ---QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVW 204 (369)
Q Consensus 128 ---~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~ 204 (369)
++.| |++.+.... ....++++.+|++||++++|++++++++++++.++++++..+ .++|+|++.... +..
T Consensus 81 ~~l~~~~-p~~~~~~~~----~~~~~~i~~lg~~~g~~~~a~~l~~~~~~~l~~i~~~~~~~~-~~~~~v~~~~~~-~~~ 153 (248)
T cd01138 81 EKLSKIA-PTVPVSYNS----SDWEEQLKEIGKLLNKEDEAEKWLADYKQKAKEAKEKIKKKL-GNDKSVAVLRGR-KQI 153 (248)
T ss_pred HHHHhhC-CEEEEcCCC----CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCEEEEEEec-CeE
Confidence 3556 777654222 235789999999999999999999999999999999988764 246888776544 445
Q ss_pred EEeC--CChHHHHHHHh-CCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccCCCc
Q 044166 205 SFTK--EAFKLKYVEDA-GGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKS 281 (369)
Q Consensus 205 ~~~g--~s~~~~li~~A-Gg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (369)
++.| +++.+.++... |..+...........++..+|+|+++++ |||+||+..+. .. .......++|.|+
T Consensus 154 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~vs~E~l~~~--nPDvIi~~~~~---~~---~~~~~l~~~p~~~ 225 (248)
T cd01138 154 YVFGEDGRGGGPILYADLGLKAPEKVKEIEDKPGYAAISLEVLPEF--DADYIFLLFFT---GP---EAKADFESLPIWK 225 (248)
T ss_pred EEEecCCCCCchhhhhccCCCCChhhccccccCCcceeCHhHhccc--cCCEEEEeeCC---Cc---hhHHHhhcchhhh
Confidence 5544 56777766444 7766542100012245789999999998 99999875321 11 1122233479999
Q ss_pred cccceeeCcEEEecc
Q 044166 282 CFAFLTNQSLWRFDK 296 (369)
Q Consensus 282 ~l~AVkngrVy~~~~ 296 (369)
+++||||||||.++.
T Consensus 226 ~l~AVk~~rv~~~~~ 240 (248)
T cd01138 226 NLPAVKNNHVYIVDA 240 (248)
T ss_pred cChhhcCCeEEEecc
Confidence 999999999999964
No 20
>PRK10576 iron-hydroxamate transporter substrate-binding subunit; Provisional
Probab=99.91 E-value=3.1e-23 Score=196.30 Aligned_cols=243 Identities=14% Similarity=0.046 Sum_probs=161.4
Q ss_pred EEEecCceEEEec-CCccc-cccCCCCcEEEecC--CCc---CcHHHHhhhcCCcccccCC---CchhhhccCceEEe-c
Q 044166 56 SFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTS--ESV---ASGCVLKLYQGGEIGLVNK---SEPLQFSQYAAHFT-T 124 (369)
Q Consensus 56 ~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~--~~~---~~p~~~~~~~~g~i~~~G~---~n~E~i~~l~P~~~-~ 124 (369)
.....++|||+.+ ...++ .+||..+ +|++. .+. ..|.+ ...+..+|. .|+|+|++++|+|+ .
T Consensus 27 ~~~~~P~RIv~l~~~~~e~l~aLG~~~--v~v~~~~~~~~~~~~~~~-----~~~~~~vg~~~~pn~E~I~alkPDLIi~ 99 (292)
T PRK10576 27 AAAIDPNRIVALEWLPVELLLALGVTP--YGVADTHNYRLWVSEPAL-----PDSVIDVGLRTEPNLELLTQMKPSLILW 99 (292)
T ss_pred cccCCCCeEEEeCcHHHHHHHHCCCCc--eeeeccccccccccCCCC-----CCcCccCcCCCCCCHHHHhhCCCCEEEe
Confidence 3456789999954 45677 9999875 56552 221 11111 112345554 39999999999653 2
Q ss_pred -C-CC----CCCCc-eEEEcCCCCCCch-hhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEE
Q 044166 125 -D-SD----QPQAC-NFANFAPFGEDGP-LRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAW 196 (369)
Q Consensus 125 -~-~~----~~~gI-pvv~~~~~~e~~p-l~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~ 196 (369)
. .+ +...| |++.+.-.....+ ....++++.+|++||+|++|++++++++++++++++++++.. ++++|++
T Consensus 100 ~~~~~~~~~~l~~iap~~~v~~~~~~~~~~~~~~~i~~lg~ilG~e~~A~~l~~~~~~~i~~v~~~~~~~~--~~~~v~~ 177 (292)
T PRK10576 100 SAGYGPSPEKLARIAPGRGFAFSDGKKPLAVARKSLVELAQRLNLEAAAETHLAQFDDFIASAKPRLAGRG--QRPLLLT 177 (292)
T ss_pred ccchhhHHHHHhhhCCEeEecCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhccc--CCCEEEE
Confidence 2 11 11123 6654321111122 235678999999999999999999999999999999988653 5677776
Q ss_pred EeeeCCEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhc
Q 044166 197 MEFYNGVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENI 275 (369)
Q Consensus 197 ~~~~~~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~ 275 (369)
....++..++.| +++.+++++.+|++|++.+.. .+.++..+|+|+++++ .|||+|+.... .. ....+..
T Consensus 178 ~~~~~~~~~~~g~~s~~~~vl~~lG~~n~~~~~~--~~~~~~~is~E~l~~~-~~pdvi~~~~~----~~---~~~~~l~ 247 (292)
T PRK10576 178 SLIDPRHALVFGPNSLFQEVLDELGIENAWQGET--NFWGSTVVGIERLAAY-KDADVICFDHG----NS---KDMQQLM 247 (292)
T ss_pred EecCCCeEEEecCCchHHHHHHHhCCCccCCCCC--cccceeecCHHHHhcC-CCCeEEEEeCC----Ch---HHHHhhh
Confidence 543334456667 899999999999999986421 1123457999999986 47899876421 11 1223334
Q ss_pred ccCCCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHh
Q 044166 276 DAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEAL 325 (369)
Q Consensus 276 ~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~l 325 (369)
+++.|++++||||||||.++. .|+..++.+...+++.+.+.+
T Consensus 248 ~~~~w~~L~AVk~~rV~~lp~--------~~~~~~~~~~~~~~~~l~~a~ 289 (292)
T PRK10576 248 ATPLWQAMPFVRAGRFQRVPA--------VWFYGATLSAMHFVRVLDNAL 289 (292)
T ss_pred hChHhHhChhhhcCCeeeCCC--------ccccCCHHHHHHHHHHHHHHh
Confidence 479999999999999999953 466555545555666666554
No 21
>PRK10957 iron-enterobactin transporter periplasmic binding protein; Provisional
Probab=99.91 E-value=7.3e-23 Score=195.88 Aligned_cols=245 Identities=8% Similarity=-0.015 Sum_probs=160.0
Q ss_pred eEEEecCceEEEec-CCccc-cccCCCCcEEEecC----CCcCc-HHH----HhhhcCCcccccC--CCchhhhccCceE
Q 044166 55 KSFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTS----ESVAS-GCV----LKLYQGGEIGLVN--KSEPLQFSQYAAH 121 (369)
Q Consensus 55 ~~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~----~~~~~-p~~----~~~~~~g~i~~~G--~~n~E~i~~l~P~ 121 (369)
.+|+.+++|||+.. ...++ .+||. +++|+.. ..... ..+ .......+++.+| ..|+|+|++++|+
T Consensus 38 ~~l~~~p~RIv~~~~~~~e~l~~LG~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~E~i~~l~PD 115 (317)
T PRK10957 38 VTLESKPQRIVSTSVTLTGTLLAIDA--PVIASGATTPNTRVADDQGFFRQWSDVAKERGVEVLYIGEPDAEAVAAQMPD 115 (317)
T ss_pred EeccCCCcEEEEeccchhHHHHHCCC--ceeeeeccCCCCccccccchhhhcchhhhccCcCccCCCCcCHHHHhhcCCC
Confidence 46888999999944 44566 88886 5888752 10100 000 0111112344554 3399999999995
Q ss_pred E-e-cCC------C-----CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 044166 122 F-T-TDS------D-----QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTK 188 (369)
Q Consensus 122 ~-~-~~~------~-----~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~ 188 (369)
+ + ... + ++.| |++++.. ... ...+.++++|++||+|++|+++++++++++++++++++..
T Consensus 116 LVi~~~~~~~~~~~~~~~L~~~g-pvv~v~~-~~~---~~~~~~~~lg~~lg~e~~A~~l~~~~~~~i~~~~~~~~~~-- 188 (317)
T PRK10957 116 LIVISATGGDSALALYDQLSAIA-PTLVIDY-DDK---SWQELATQLGEATGLEKQAAAVIAQFDAQLAEVKAKITLP-- 188 (317)
T ss_pred EEEEeCCCchhHHHHHHHHHhhC-CEEEEeC-CCc---cHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhhhccC--
Confidence 4 2 211 1 4678 9988742 222 2456789999999999999999999999999999887432
Q ss_pred CCCCEEEEEeeeCCEEEEeC-CChHHHHHHHhCCccccc--cCCCc----ccCccccCCHHHHHH-hcCCCcEEEecCCC
Q 044166 189 PFKPIVAWMEFYNGVWSFTK-EAFKLKYVEDAGGENVDS--SINKM----TYNISNSDDLEQLHA-ILCTVDVVIDGTYT 260 (369)
Q Consensus 189 ~~kp~V~~~~~~~~~~~~~g-~s~~~~li~~AGg~nv~~--~~~~~----~~~g~~~vs~E~v~~-~~~npDvii~~~~~ 260 (369)
..+++|++....++..++.+ +++.+.+++++|++++.. +.... ...++.++|+|+|++ + |||+||+..+
T Consensus 189 ~~~~~v~~~~~~~~~~~~~~~~s~~~~~l~~lG~~~~~~~~~~~~~~~~~~~~~~~~is~E~l~~~~--nPdvI~v~~~- 265 (317)
T PRK10957 189 PQPVSALVYNGAGHSANLWTPESAQGQLLEQLGFTLAELPAGLQASTSQGKRHDIIQLGGENLAAGL--NGETLFLFAG- 265 (317)
T ss_pred CCCeEEEEEecCCCcceeecCCCcHHHHHHHhcCccCCCcccccccccccCCCCeEEECHHHhhhcc--CCceEEEecC-
Confidence 23456665432232445555 899999999999998642 11100 113467899999999 8 9998887432
Q ss_pred CCCCCCChhhHHhhcccCCCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHh
Q 044166 261 LEPANYTQSTFLENIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEAL 325 (369)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~l 325 (369)
+ .....+..++|.|+.++||||||||.++.. ...| ++..+...|.+|++.+
T Consensus 266 -~-----~~~~~~l~~~p~~~~l~AVk~grV~~~~~~-----~~~~---~~~s~~~~l~~~~~~~ 316 (317)
T PRK10957 266 -D-----DKDADAFLADPLLANLPAVQNKQVYALGTD-----TFRL---DYYSATQLLDRLAALF 316 (317)
T ss_pred -C-----HHHHHHHhhCchhhhCCcccCCcEEEcccc-----ceec---cHHHHHHHHHHHHHHh
Confidence 1 112334445799999999999999998542 1122 4445666788777654
No 22
>COG4607 CeuA ABC-type enterochelin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.4e-21 Score=177.69 Aligned_cols=251 Identities=14% Similarity=0.089 Sum_probs=182.1
Q ss_pred eEEEecCceEEE-ecCCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCCC---chhhhccCceEE--ecCC-
Q 044166 55 KSFVIPMSNYSV-DTDFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKS---EPLQFSQYAAHF--TTDS- 126 (369)
Q Consensus 55 ~~i~~Pv~RIv~-~~~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~~---n~E~i~~l~P~~--~~~~- 126 (369)
.+|+.+++|||+ .-+.++. ..||..+.+|| +.. ..|.+.+.+..++.+.+|+- |+|+|.+++|+| +++.
T Consensus 52 ~~vpknPekVvv~D~gaLD~ld~lGve~~~v~-~~~--~~P~yL~~y~~dky~nvGtlfEPD~Eai~a~kPdLIIiggR~ 128 (320)
T COG4607 52 TVVPKNPEKVVVLDLGALDTLDALGVEVVAVG-PGK--NLPAYLQKYKDDKYANVGTLFEPDYEAIAAAKPDLIIIGGRA 128 (320)
T ss_pred ccccCCCceEEEecchhhhhHHHhCCcccccc-CCC--CccHHHHHhccCCccccCcccCCCHHHHHhcCCCEEEECcHH
Confidence 578889999999 5577887 99999877877 321 23777777777788889975 999999999955 4542
Q ss_pred ----CCCCCc-eEEEcCCCCCCchhh-HhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeee
Q 044166 127 ----DQPQAC-NFANFAPFGEDGPLR-RAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFY 200 (369)
Q Consensus 127 ----~~~~gI-pvv~~~~~~e~~pl~-~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~ 200 (369)
++...| |+|.++-... +..+ ....++.||++||+|++|+++...+++.++++++.+++. ..++++...+
T Consensus 129 ak~yd~l~kiAPti~l~~d~~-n~~~S~~~n~e~Lg~IFgkE~eAk~~~~~id~~i~~~k~~a~~~----~~t~m~il~n 203 (320)
T COG4607 129 AKAYDKLSKIAPTIDLGADTA-NLIESTKQNIETLGKIFGKEEEAKELLADIDASIAAAKEKAAGK----GKTALVILVN 203 (320)
T ss_pred HHHHHHHHhhCCeEEeccchH-HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhcc----CCeeEEEEec
Confidence 245556 8887742211 1222 235799999999999999999999999999999887764 4578887777
Q ss_pred CCEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccCC
Q 044166 201 NGVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAAD 279 (369)
Q Consensus 201 ~~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~~ 279 (369)
+|.....| +|..+-+..+.|..-+...++ .++....||+|.|.+. |||++++......-+. .-+...+.+.++.
T Consensus 204 gGkisafGp~SRfg~ihd~~G~~pvd~~~~--~s~HGq~VSfEyI~e~--NPD~lfViDR~~aig~-~~~~a~qvldN~l 278 (320)
T COG4607 204 GGKISAFGPSSRFGWIHDDLGFTPVDENIK--NSNHGQPVSFEYIKEK--NPDWLFVIDRGAAIGE-EGSAAKQVLDNEL 278 (320)
T ss_pred CCeeeeecCCCcceeeecccCCCccccccc--ccCCCCeecHHHHHhh--CCCEEEEEeCcchhcC-CchhHHHhhccHH
Confidence 88888888 888885567788887766543 2345689999999998 9998887542111111 1123445556789
Q ss_pred CccccceeeCcEEEeccCCCCCcCccccccc--CCCHHHHHHHHHHHh
Q 044166 280 KSCFAFLTNQSLWRFDKRNQNSLALDWFDGA--VSQPQLVLADLTEAL 325 (369)
Q Consensus 280 ~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~--~~~p~~vL~dla~~l 325 (369)
.++.+|+|||+||.++.. .||-.+ ......++++|.+.|
T Consensus 279 v~~t~A~k~g~I~yLdp~-------~wy~aggG~~s~~~~i~~~~~a~ 319 (320)
T COG4607 279 VANTKAWKNGQIIYLDPD-------TWYIAGGGLESLTQMIEQVKAAF 319 (320)
T ss_pred HHhcchhhcCeEEEEChH-------HhhhhcccHHHHHHHHHHHHHhh
Confidence 999999999999999763 476555 334444566666654
No 23
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.9e-19 Score=159.48 Aligned_cols=247 Identities=15% Similarity=0.093 Sum_probs=169.1
Q ss_pred eEEEecCceEEEe-cCCccc-cccCCCCcEEEecCCCc---CcHHHHhhhcCCcccccCCC---chhhhccCceEEe-cC
Q 044166 55 KSFVIPMSNYSVD-TDFFPG-KLLGLLSSMKGMTSESV---ASGCVLKLYQGGEIGLVNKS---EPLQFSQYAAHFT-TD 125 (369)
Q Consensus 55 ~~i~~Pv~RIv~~-~~~~~~-~~Lg~~d~IvGv~~~~~---~~p~~~~~~~~g~i~~~G~~---n~E~i~~l~P~~~-~~ 125 (369)
.+|+.-++|||++ -+.++. .+||. ..||+.++.- -.+.+++.+ +....+|.. |+|.|.+|+|+|+ .+
T Consensus 43 ~tv~k~PKRVVVLE~SFaDaLaal~v--~PVGIADDnk~krI~k~Vr~ki--~~ytSVGTRsQPslE~Is~LKPDLIIAD 118 (310)
T COG4594 43 FTVPKTPKRVVVLELSFADALAALGV--TPVGIADDNKKKRILKDVRDKI--DPYTSVGTRSQPSLEAISALKPDLIIAD 118 (310)
T ss_pred eecCCCCceEEEEEecHHHHHHHcCC--eeeeeccCchhhhhhHHHHhhc--CCcccccCCCCCCHHHHhccCCCeEEec
Confidence 4566669999984 455666 77887 5999994221 114555554 234567765 9999999999774 33
Q ss_pred CC-------CCCCc-eEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEE
Q 044166 126 SD-------QPQAC-NFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWM 197 (369)
Q Consensus 126 ~~-------~~~gI-pvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~ 197 (369)
.. +...| |++.+.+..+ +.-...+..+.+|..+|||++.++-++.-++.+++++++...- .+ ++.++
T Consensus 119 ~sRHk~vy~eLkKIAPTi~LkS~~~-dY~eni~s~~tIakavgKekE~ekrLa~Hkk~ia~~k~~l~k~---~~-~~~~G 193 (310)
T COG4594 119 SSRHKKVYKELKKIAPTIALKSRNE-DYQENIDSFKTIAKAVGKEKEMEKRLAKHKKKIAEIKKKLPKG---TN-SLAIG 193 (310)
T ss_pred chhhHHHHHHHHhhcceeEecccCc-cHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhCcCC---cc-eeeEE
Confidence 22 45566 8888753332 3334567899999999999999999999999999998776543 23 56666
Q ss_pred eeeCCEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcc
Q 044166 198 EFYNGVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENID 276 (369)
Q Consensus 198 ~~~~~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~ 276 (369)
....+.+.... .||.++++...|-.-.... ..+..+..++.||+++. |||++|+.++. +. ....+...
T Consensus 194 vsr~~~f~l~~~~sy~G~~l~~lG~~~~~~~---s~~~~~~~~~lEqLa~~--nPd~mil~t~~-d~-----~~~~k~~~ 262 (310)
T COG4594 194 VSRATQFNLHTEESYTGQLLTQLGYQVPAAS---SDGGPYMSVGLEQLAAI--NPDVMILATYR-DE-----SIVRKWEK 262 (310)
T ss_pred ecchhheeccccchHHHHHHHHhcCcccccc---cCCCCcccccHHHHhcC--CCCEEEEEecC-ch-----hhhhhhhc
Confidence 65555555665 9999999999998833321 11234689999999987 99999987653 11 11222234
Q ss_pred cCCCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCCC
Q 044166 277 AADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPT 328 (369)
Q Consensus 277 ~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhPe 328 (369)
++.|+.++|||||+||.++.+ -|-.....-....+.|-.+.+||.
T Consensus 263 ~~lWK~LkAVKn~qV~~vDrn-------~War~RGi~aaE~madel~k~~~k 307 (310)
T COG4594 263 NALWKKLKAVKNGQVYDVDRN-------TWARSRGIDAAESMADELQKFMPK 307 (310)
T ss_pred chHHHHHHHhhcCcEEEechh-------HHHHhccchhHHHHHHHHHHHhhh
Confidence 699999999999999999864 354433322333455555666664
No 24
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=99.83 E-value=2e-19 Score=158.82 Aligned_cols=166 Identities=19% Similarity=0.306 Sum_probs=127.5
Q ss_pred eEEEecCceEEEec-CCccc-cccCCCCcEEEecC-C-CcCcHHHHhhhcCCcccccCCCchhhhccCceEE--ecC-C-
Q 044166 55 KSFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTS-E-SVASGCVLKLYQGGEIGLVNKSEPLQFSQYAAHF--TTD-S- 126 (369)
Q Consensus 55 ~~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~-~-~~~~p~~~~~~~~g~i~~~G~~n~E~i~~l~P~~--~~~-~- 126 (369)
.+|+.|++||++.+ ....+ .+||..|+|||++. . ....|.+.+.... .+......|+|+|++++|++ .+. +
T Consensus 2 ~~~~~~p~RIv~~~~~~~~~l~~lg~~d~ivg~~~~~~~~~~p~~~~~~~~-~~g~~~~~n~E~ll~l~PDlii~~~~~~ 80 (186)
T cd01141 2 KTIKVPPKRIVVLSPTHVDLLLALDKADKIVGVSASAYDLNTPAVKERIDI-QVGPTGSLNVELIVALKPDLVILYGGFQ 80 (186)
T ss_pred ceEEeccceEEEccHhHHHHHHHcCCccceeeecCCceeecCHHHHHHHHH-hcCCCCCCCHHHHhccCCCEEEEecCCC
Confidence 46889999999844 44567 99999999999984 2 1235777654321 11112224999999999954 222 1
Q ss_pred C-------CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEE
Q 044166 127 D-------QPQACNFANFAPFGEDGPLRRAEWIKFLGIFAN--AEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWM 197 (369)
Q Consensus 127 ~-------~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~g--ke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~ 197 (369)
+ ++.||||+++..+ .+..+..++++.+|.+|| ++++|++++++++++++.+++++++ . +||+|++.
T Consensus 81 ~~~~~~~l~~~gIpvv~i~~~--~~~~~~~~~i~~~g~~~g~~~~~~a~~~i~~~~~~~~~i~~~~~~-~--~~~~v~~~ 155 (186)
T cd01141 81 AQTILDKLEQLGIPVLYVNEY--PSPLGRAEWIKFAAAFYGVGKEDKADEAFAQIAGRYRDLAKKVSN-L--NKPTVAIG 155 (186)
T ss_pred chhHHHHHHHcCCCEEEeCCC--CChhhHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHhcC-C--CCCeEEEe
Confidence 1 4789999887532 234456788999999999 9999999999999999999999877 3 68999988
Q ss_pred eeeCCEEEEeC-CChHHHHHHHhCCccccc
Q 044166 198 EFYNGVWSFTK-EAFKLKYVEDAGGENVDS 226 (369)
Q Consensus 198 ~~~~~~~~~~g-~s~~~~li~~AGg~nv~~ 226 (369)
...++.+++.| +++.+.+++.+||.|+++
T Consensus 156 ~~~~~~~~~~g~~~~~~~~i~~~G~~~~~~ 185 (186)
T cd01141 156 KPVKGLWYMPGGNSYVAKMLRDAGGRYLSA 185 (186)
T ss_pred eecCCEEEEeCCccHHHHHHHHcCCcccCC
Confidence 65557788888 999999999999999986
No 25
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=99.12 E-value=8.3e-10 Score=91.89 Aligned_cols=123 Identities=13% Similarity=-0.009 Sum_probs=87.3
Q ss_pred ceEEEec-CCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCC---CchhhhccCceEE--ecCC--C-----
Q 044166 62 SNYSVDT-DFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNK---SEPLQFSQYAAHF--TTDS--D----- 127 (369)
Q Consensus 62 ~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~---~n~E~i~~l~P~~--~~~~--~----- 127 (369)
+||++.. ....+ ..||..+.+||........+..... ...+...|. .|+|.|++++|++ ..+. .
T Consensus 1 ~riv~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~E~l~~l~pDlvi~~~~~~~~~~~~ 78 (148)
T cd00636 1 KRVVALDPGATELLLALGGDDKPVGVADPSGYPPEAKAL--LEKVPDVGHGYEPNLEKIAALKPDLIIANGSGLEAWLDK 78 (148)
T ss_pred CeEEEecccHHHHHHHcCCCCeeEeeecccCCChhhhhh--hccCCccCCCCCCCHHHHhccCCCEEEEecccchhHHHH
Confidence 4788743 34456 8888889999988411112222111 122233333 2999999999944 3221 1
Q ss_pred -CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCC
Q 044166 128 -QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGK 186 (369)
Q Consensus 128 -~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~ 186 (369)
...|||++.+....+.++.++.++++.+|.+||++++|++++++++++++.++++++++
T Consensus 79 l~~~~i~~~~~~~~~~~~~~~~~~~i~~lg~~~~~~~~a~~~~~~~~~~~~~i~~~~~~~ 138 (148)
T cd00636 79 LSKIAIPVVVVDEASELSLENIKESIRLIGKALGKEENAEELIAELDARLAELRAKLAKI 138 (148)
T ss_pred HHHhCCCEEEECCCCcCCHHHHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 57789998875433346778889999999999999999999999999999999998876
No 26
>COG4592 FepB ABC-type Fe2+-enterobactin transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=99.08 E-value=7e-09 Score=92.39 Aligned_cols=246 Identities=9% Similarity=0.017 Sum_probs=145.5
Q ss_pred EEEecCceEEEec-CCccc-cccCCCCcEEEec---C-CCcCc-H----HHHhhhcCCccc--ccCCCchhhhccCceEE
Q 044166 56 SFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMT---S-ESVAS-G----CVLKLYQGGEIG--LVNKSEPLQFSQYAAHF 122 (369)
Q Consensus 56 ~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~---~-~~~~~-p----~~~~~~~~g~i~--~~G~~n~E~i~~l~P~~ 122 (369)
+++.-+.|||+.+ +..+. .++++- |++-. . ....+ . .+.+.-+...+. ..|..|+|.+.+..|+|
T Consensus 41 Tl~~kPaRIvSTsvTvTGtLLAidAP--viASaATtpn~rlad~~gFf~QWskvA~~R~v~~ly~~ep~~eaVaaq~PDL 118 (319)
T COG4592 41 TLESQPARIVSTSVTVTGTLLAIDAP--VIASAATTPNNRLADDQGFFRQWSKVAKARHVQRLYIGEPDIEAVAAQMPDL 118 (319)
T ss_pred ccCCCCceeeeecceeeeeEEecccc--eeecccCCCCccccccchHHHHHHHHHHhccceehhcCCCcHHHHHhhCCCE
Confidence 4555678999843 34455 666663 55433 1 11111 1 111111111122 34556999999999955
Q ss_pred --ecCC--C-------CCCCc-eEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 044166 123 --TTDS--D-------QPQAC-NFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPF 190 (369)
Q Consensus 123 --~~~~--~-------~~~gI-pvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~ 190 (369)
++.. | +..-| |+++++ |.+.+ ..+-..-||..+|.|++|++.++.++++.++++++++- ++ .
T Consensus 119 iviSatG~DSal~lydqLsAiaPTlvin-YddkS---WQ~L~tqLG~~TG~E~qAe~~I~~F~~~l~~vk~~i~l-Pp-q 192 (319)
T COG4592 119 IVISATGADSALALYDQLSAIAPTLVIN-YDDKS---WQSLATQLGEATGHEKQAEARIAQFDKQLAEVKQQIAL-PP-Q 192 (319)
T ss_pred EEEEccCCccHHHHHHHHhhhcCEEEEe-cCchh---HHHHHHHHhhhhCchHHHHHHHHHHHHHHHHHHHhhcC-CC-C
Confidence 4432 2 23334 888774 54432 45567889999999999999999999999999988653 31 2
Q ss_pred CCEEEEEeeeCCEEEEeC-CChHHHHHHHhCCcccc--ccCCCcccCc----cccCCHHHHHHhcCCCcEEEecCCCCCC
Q 044166 191 KPIVAWMEFYNGVWSFTK-EAFKLKYVEDAGGENVD--SSINKMTYNI----SNSDDLEQLHAILCTVDVVIDGTYTLEP 263 (369)
Q Consensus 191 kp~V~~~~~~~~~~~~~g-~s~~~~li~~AGg~nv~--~~~~~~~~~g----~~~vs~E~v~~~~~npDvii~~~~~~~~ 263 (369)
+.+++......++..+-. +|-.++|++..|....- ..+......+ ...++-|.+.+ +-|.+-++.-++
T Consensus 193 pvsavvY~~~a~sa~lwt~~Saqg~LL~~lGftla~lP~~l~~~~s~~~R~DiiqlggenLaa-glnges~fLf~g---- 267 (319)
T COG4592 193 PVSAVVYTAAAHSANLWTPESAQGQLLEQLGFTLAELPDGLNASQSQGHRHDIIQLGGENLAA-GLNGESLFLFAG---- 267 (319)
T ss_pred CeeEEEEccccchhhhcCccchHHHHHHHhCcchhhCChhhhccccccchhhHHHhhhhhHhh-hhccceEEEEec----
Confidence 334443322223323333 78899999999987432 2221111111 24677788776 247776655321
Q ss_pred CCCChhhHHhhcccCCCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHh
Q 044166 264 ANYTQSTFLENIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEAL 325 (369)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~l 325 (369)
+-++....+.+|.+++++||+|+|||..-.+ +...|||. ...+|.-++.+|
T Consensus 268 ---~~~d~~A~~anp~LanLpavq~k~VYalG~~---tFRlDyyS-----a~~ll~rl~~~F 318 (319)
T COG4592 268 ---DDKDADAFLANPLLANLPAVQNKQVYALGTE---TFRLDYYS-----ARQLLNRLARLF 318 (319)
T ss_pred ---chHHHHHHhcChhhhcchhhhhcceeecccc---ceeeeHHh-----HHHHHHHHHHhh
Confidence 1124445556799999999999999988432 22234542 345566666654
No 27
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=94.06 E-value=0.25 Score=48.89 Aligned_cols=87 Identities=11% Similarity=0.017 Sum_probs=59.8
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEEEe
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFT 207 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~~~ 207 (369)
++.|||++....+ ..-+..+|++.+|+++|+++++++++++.++++....++.+... ..++|++.... + .
T Consensus 228 ~r~GiP~~~~~p~---G~~~t~~~l~~l~~~lg~~~~~~~~i~~~~~~~~~~l~~~~~~l--~gkrv~I~~~~-~--~-- 297 (406)
T cd01967 228 ERYGIPYMEVNFY---GFEDTSESLRKIAKFFGDEEKAEEVIAEEEARIKPELEKYRERL--KGKKVIIYTGG-A--R-- 297 (406)
T ss_pred HhhCCCEEEecCC---cHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCEEEEEccC-c--c--
Confidence 5789999764322 23345689999999999999999999999999888777666543 24566543211 1 1
Q ss_pred CCChHHHHHHHhCCcccc
Q 044166 208 KEAFKLKYVEDAGGENVD 225 (369)
Q Consensus 208 g~s~~~~li~~AGg~nv~ 225 (369)
.-....++...|.+.+.
T Consensus 298 -~~~~~~~l~elG~~v~~ 314 (406)
T cd01967 298 -SWHVIAALRELGMEVVA 314 (406)
T ss_pred -hHHHHHHHHHcCCEEEE
Confidence 12234788889988553
No 28
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=81.12 E-value=6.3 Score=39.34 Aligned_cols=88 Identities=15% Similarity=0.035 Sum_probs=55.0
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEEEe
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFT 207 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~~~ 207 (369)
++.|||.+...-.. .+-+..+|++.++.+||.+++++++++.-++++...-++....-. .|+.+++... +
T Consensus 234 e~~GiP~~~~~~P~--G~~~T~~~l~~ia~~~g~~~~~e~~i~~e~~~~~~~l~~~~~~l~-Gk~~~i~~~~--~----- 303 (426)
T cd01972 234 QRFGVPEIKAPQPY--GIEATDKWLREIAKVLGMEAEAEAVIEREHERVAPEIEELRKALK-GKKAIVETGA--A----- 303 (426)
T ss_pred HHhCCCeEecCCcc--CHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhC-CCEEEEEeCC--c-----
Confidence 57899988653111 233457899999999999989999998888777666554433221 2343333211 0
Q ss_pred CCChHHHHHHHhC-Ccccc
Q 044166 208 KEAFKLKYVEDAG-GENVD 225 (369)
Q Consensus 208 g~s~~~~li~~AG-g~nv~ 225 (369)
-...+..++...| ++-+.
T Consensus 304 ~~~~~~~~l~elG~~~v~~ 322 (426)
T cd01972 304 YGHLLIAVLRELGFGEVPV 322 (426)
T ss_pred cHHHHHHHHHHcCCceEEE
Confidence 0223556677888 77554
No 29
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=81.02 E-value=7.6 Score=39.33 Aligned_cols=88 Identities=17% Similarity=0.205 Sum_probs=53.6
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcH--HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEE
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAE--ARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWS 205 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke--~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~ 205 (369)
++.|||.+... . -..-+..+|++.++++||++ ++++++++.-++++....++....- ...+|++.. ++
T Consensus 275 ~~fGiP~~~~~-~--~Gi~~T~~~Lr~ia~~~g~~i~~~~e~~I~~e~~~~~~~ld~~~~~L--~GKrv~i~~--g~--- 344 (466)
T TIGR01282 275 EKYGIPWMEYN-F--FGPTKIAESLRKIAEFFDDEIKEKAEEVIAKYQPAVDAVIAKYRPRL--EGKTVMLYV--GG--- 344 (466)
T ss_pred HHhCCceEeCC-C--CCHHHHHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEEEC--CC---
Confidence 46799988764 2 12334568999999999965 7888888887777766655443322 123344321 11
Q ss_pred EeCCChHHHHHHHhCCccccc
Q 044166 206 FTKEAFKLKYVEDAGGENVDS 226 (369)
Q Consensus 206 ~~g~s~~~~li~~AGg~nv~~ 226 (369)
.-...+..++++.|.+-+..
T Consensus 345 -~~~~~~~~~l~ELGmevv~~ 364 (466)
T TIGR01282 345 -LRPRHVIGAFEDLGMEVIGT 364 (466)
T ss_pred -CcHHHHHHHHHHCCCEEEEE
Confidence 01112334677888887654
No 30
>PHA02097 hypothetical protein
Probab=79.06 E-value=3.1 Score=28.04 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=23.1
Q ss_pred ccceEEEEcCCEEEEEeCCCCcEEEEEe
Q 044166 11 AQNFHIYYGQTFKVIKNAIDGRSYLLIQ 38 (369)
Q Consensus 11 A~~f~i~y~~~yk~v~~~~~~~~y~Lv~ 38 (369)
|++|.+....+-|+|+|| ++.-|.|+.
T Consensus 32 ~~~f~~~fi~~ikvv~~~-n~ng~~~~h 58 (59)
T PHA02097 32 VSNFKIQFIAGVKVVKDA-NYNGFELVH 58 (59)
T ss_pred eccceEEEeCCcEEEecC-CCCcEEEec
Confidence 788999999999999999 677788764
No 31
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=75.24 E-value=13 Score=37.51 Aligned_cols=88 Identities=15% Similarity=0.066 Sum_probs=51.1
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH-hCCCCCCCCEEEEEeeeCCEEEE
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVA-AGKTKPFKPIVAWMEFYNGVWSF 206 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~-~~~~~~~kp~V~~~~~~~~~~~~ 206 (369)
++.|||.+....+ ..-+..+|++.++++||.++++++++..-.+++...-+.. ..+. ..+|++.. ++. .
T Consensus 269 er~GiP~~~~~p~---Gi~~T~~~L~~la~~~g~~~~~e~~I~~e~~~~~~~Ld~~~~~L~---GkrvaI~~--~~~-~- 338 (461)
T TIGR01860 269 KRYGIPRLDVDTW---GFNYMAEALRKIGAFFGIEDKAEEVIAEEYAKYKPKLDWYKERLQ---GKKMCIWT--GGP-R- 338 (461)
T ss_pred HHhCCCeecCCcC---CHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHcC---CCEEEEEC--CCc-h-
Confidence 5779998865422 2334568999999999999999988777654444333322 2222 24454421 110 0
Q ss_pred eCCChHHHHHHHhCCccccc
Q 044166 207 TKEAFKLKYVEDAGGENVDS 226 (369)
Q Consensus 207 ~g~s~~~~li~~AGg~nv~~ 226 (369)
.-++...+.+..|.+-+..
T Consensus 339 -~~~~~~~l~~ElGmevv~~ 357 (461)
T TIGR01860 339 -LWHWTKALEDDLGMQVVAM 357 (461)
T ss_pred -HHHHHHHHHHhCCCEEEEE
Confidence 0234444444788886653
No 32
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=73.78 E-value=17 Score=36.62 Aligned_cols=87 Identities=11% Similarity=0.070 Sum_probs=52.3
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcH---HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEE
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAE---ARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVW 204 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke---~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~ 204 (369)
++.|||.+... .. ..-+..+|++.++.+||.+ ++++++++..++++...-+.....- ...+|++.. ++
T Consensus 265 e~~GiP~~~~~-~~--G~~~T~~~L~~Ia~~lg~~~~~~~~~~~i~~e~~~~~~~l~~~~~~L--~Gkrv~i~~--g~-- 335 (456)
T TIGR01283 265 EKYGIPYFEGS-FY--GIEDTSKALRDIADLFGDEELLKRTEELIAREEAKIRPALEPYRERL--KGKKAAIYT--GG-- 335 (456)
T ss_pred HHcCCCEEecC-CC--cHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEEc--CC--
Confidence 57799998632 21 2334678999999999975 4688888877776655543333221 123343311 11
Q ss_pred EEeCCCh-HHHHHHHhCCccccc
Q 044166 205 SFTKEAF-KLKYVEDAGGENVDS 226 (369)
Q Consensus 205 ~~~g~s~-~~~li~~AGg~nv~~ 226 (369)
...+ +.+++.+.|.+.+..
T Consensus 336 ---~~~~~l~~~l~elGmevv~~ 355 (456)
T TIGR01283 336 ---VKSWSLVSALQDLGMEVVAT 355 (456)
T ss_pred ---chHHHHHHHHHHCCCEEEEE
Confidence 1122 556788899986654
No 33
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=71.65 E-value=15 Score=36.34 Aligned_cols=87 Identities=11% Similarity=0.024 Sum_probs=51.7
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcH---HHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCEEEEEeeeCCE
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAE---ARANQVYNAVKENYLCLTRVAA-GKTKPFKPIVAWMEFYNGV 203 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke---~~A~~~~~~~~~~~~~i~~~~~-~~~~~~kp~V~~~~~~~~~ 203 (369)
++.|||.+.... -..-+..+|++.++.+||.+ ++++++++..++++...-+... .+. ..+|++... ..
T Consensus 226 ~~fGip~~~~~p---~G~~~t~~~l~~ia~~~g~~~~~~~~~~~i~~e~~~~~~~l~~~~~~l~---gkrv~i~~~--~~ 297 (410)
T cd01968 226 EKYGIPYIEVSF---YGIRDTSKSLRNIAELLGDEELIERTEELIAREEARLRPELAPYRARLE---GKKAALYTG--GV 297 (410)
T ss_pred HHhCCCeEecCc---CcHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCEEEEEcC--Cc
Confidence 577999886421 12334578999999999997 6788887776665554433322 222 233433211 10
Q ss_pred EEEeCCChHHHHHHHhCCccccc
Q 044166 204 WSFTKEAFKLKYVEDAGGENVDS 226 (369)
Q Consensus 204 ~~~~g~s~~~~li~~AGg~nv~~ 226 (369)
. --.+++++++.|.+-+..
T Consensus 298 -~---~~~la~~l~elGm~v~~~ 316 (410)
T cd01968 298 -K---SWSLVSALQDLGMEVVAT 316 (410)
T ss_pred -h---HHHHHHHHHHCCCEEEEE
Confidence 1 123556888899986544
No 34
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=69.96 E-value=17 Score=36.20 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=53.5
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcH--HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEE
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAE--ARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWS 205 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke--~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~ 205 (369)
++.|||.+... .. ..-+..+|++.++.+||++ ++++++++.-++++...-+.....- ..++|++... +.
T Consensus 240 ~~fGiP~~~~~-p~--Gi~~t~~~l~~ia~~~g~~~~~~~e~~i~~e~~~~~~~l~~~~~~L--~Gkrv~i~~g--~~-- 310 (421)
T cd01976 240 EKYGIPWMEYN-FF--GPTKIAESLRKIAAYFDDEITAKTEEVIAEYKPAMEAVIAKYRPRL--EGKTVMLYVG--GL-- 310 (421)
T ss_pred HHhCCcEEecc-cC--CHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCEEEEECC--CC--
Confidence 46789988664 21 2334578999999999984 7788888877766666554443322 2344543211 10
Q ss_pred EeCCChHHHHHHHhCCccccc
Q 044166 206 FTKEAFKLKYVEDAGGENVDS 226 (369)
Q Consensus 206 ~~g~s~~~~li~~AGg~nv~~ 226 (369)
-...+..+++..|.+-+..
T Consensus 311 --~~~~~~~~l~elGmevv~~ 329 (421)
T cd01976 311 --RPRHYIGAYEDLGMEVVGT 329 (421)
T ss_pred --cHHHHHHHHHHCCCEEEEE
Confidence 0123345778888886654
No 35
>TIGR01861 ANFD nitrogenase iron-iron protein, alpha chain. This model represents the all-iron variant of the nitrogenase component I alpha chain. Molybdenum-iron and vanadium iron forms are also found. The complete complex contains two alpha chains, two beta chains and two delta chains. The component I associates with component II also known as the iron protein which serves to provide electrons for component I.
Probab=69.85 E-value=11 Score=38.67 Aligned_cols=47 Identities=13% Similarity=0.146 Sum_probs=34.5
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYL 177 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~ 177 (369)
++.|||.+.+..+ ..-+..+||+.++++||.+++|++++..-.+++.
T Consensus 270 er~GiP~~~~~~~---Gi~~Td~~Lr~la~~~g~~~~~e~~I~~e~~~~r 316 (513)
T TIGR01861 270 KRYGIPRLDIDGF---GFEPLAASLRKVAMFFGIEDEAQAIIDEETARWK 316 (513)
T ss_pred HHhCCCeEecCcC---CHHHHHHHHHHHHHHhCCChhHhHhhHHHHHHHH
Confidence 4778998865422 2334568999999999999999988877655433
No 36
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=66.80 E-value=18 Score=36.61 Aligned_cols=51 Identities=18% Similarity=0.115 Sum_probs=37.3
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHH
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTR 181 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~ 181 (369)
++.|||.+....+ ..-+..+|++.++++||.++++++++++-.+++...-+
T Consensus 267 ~~~GiP~~~~~~~---G~~~T~~~l~~ia~~~g~~~~~e~~i~~~~~~~~~~ld 317 (457)
T TIGR01284 267 ERYGIPRLDIDFF---GFEYCAKNLRKIGEFFGIEERAERVIEEEMAKWKPELD 317 (457)
T ss_pred HHhCCCeEecccC---CHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 4779999866422 23345689999999999999999888876666554444
No 37
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=58.75 E-value=31 Score=34.65 Aligned_cols=89 Identities=18% Similarity=0.045 Sum_probs=51.0
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEEEe
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFT 207 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~~~ 207 (369)
++.|||.+.... + ..-+..+|++.++.++|.+++++++++.-.+++.+.-+.....- ...+|++... +. ..
T Consensus 259 er~GiP~~~~~p-~--G~~~t~~~l~~la~~~gi~~~~e~~i~~~~~~~~~~l~~~~~~l--~gkrvai~~~--~~-~~- 329 (443)
T TIGR01862 259 ERYGIPWMKIDF-F--GFTYTAESLRAIAAFFGIEKRAEEVIAEEKAKWKPELDYYKERL--QGKRVCLYIG--GS-RL- 329 (443)
T ss_pred HHhCCCeEeccc-C--CHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHh--cCCeEEEECC--ch-hH-
Confidence 467999887642 2 23445689999999999999888877776555443333222211 1234544211 00 00
Q ss_pred CCChHHHHHHHhCCccccc
Q 044166 208 KEAFKLKYVEDAGGENVDS 226 (369)
Q Consensus 208 g~s~~~~li~~AGg~nv~~ 226 (369)
-++...++...|.+-+..
T Consensus 330 -~~~~~~ll~elGm~v~~~ 347 (443)
T TIGR01862 330 -WHWIGSAEEDLGMEVVAV 347 (443)
T ss_pred -HHHHHHHHHHCCCEEEEe
Confidence 123333777788875543
No 38
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=57.46 E-value=64 Score=32.15 Aligned_cols=85 Identities=11% Similarity=0.002 Sum_probs=44.3
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEEEe
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFT 207 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~~~ 207 (369)
++.|+|.+...... ..-+..+|++.++.++|++. .+++..+.++..+.+.+.-..+. ..+|++... +
T Consensus 242 e~~GiP~~~~~~p~--G~~~t~~~l~~l~~~~g~~~-~~~~~~~r~~~~~~~~~~~~~l~---gk~v~i~~~-------~ 308 (428)
T cd01965 242 EKFGVPYILFPTPI--GLKATDEFLRALSKLSGKPI-PEELERERGRLLDAMLDSHFYLG---GKRVAIAGD-------P 308 (428)
T ss_pred HHHCCCeeecCCCc--ChHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHhc---CCEEEEEcC-------h
Confidence 47899998764111 22345689999999999865 22333332222222222222221 234443211 0
Q ss_pred C-CChHHHHHHHhCCcccc
Q 044166 208 K-EAFKLKYVEDAGGENVD 225 (369)
Q Consensus 208 g-~s~~~~li~~AGg~nv~ 225 (369)
. ---+.+++...|+.-+.
T Consensus 309 ~~~~~l~~~L~e~G~~v~~ 327 (428)
T cd01965 309 DLLLGLSRFLLEMGAEPVA 327 (428)
T ss_pred HHHHHHHHHHHHcCCcceE
Confidence 1 11256677778888653
No 39
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=56.73 E-value=37 Score=33.76 Aligned_cols=46 Identities=22% Similarity=0.214 Sum_probs=33.8
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENY 176 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~ 176 (369)
++.|+|.+....+ ..-+..+|++.++.+||++.++++++..-.+++
T Consensus 230 er~GiP~~~~~~~---G~~~t~~~l~~la~~~g~~~~~e~~i~~~~~~~ 275 (415)
T cd01977 230 KRYGIPRLDVDGF---GFEYCAESLRKIGAFFGIEDRAEAVIAEEMAKW 275 (415)
T ss_pred HHhCCCeEEeccC---CHHHHHHHHHHHHHHhCcchhHHHHHHHHHHHH
Confidence 4779999876422 334467899999999999988888766654443
No 40
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=55.84 E-value=46 Score=35.69 Aligned_cols=59 Identities=12% Similarity=-0.096 Sum_probs=38.8
Q ss_pred CCCEEEEEeeeCCEEEEeCCChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhc--CCCcEEEecC
Q 044166 190 FKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAIL--CTVDVVIDGT 258 (369)
Q Consensus 190 ~kp~V~~~~~~~~~~~~~g~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~--~npDvii~~~ 258 (369)
.+|+|++...... -...+..+...+++.+|.+-+.. ....|.|.+.+.+ .++|++++.+
T Consensus 581 ~rpkV~LatlG~d-~H~~ra~fv~~~l~~~GfeV~~~---------~~~~s~e~~v~aa~~~~a~ivvlcs 641 (714)
T PRK09426 581 RRPRILVAKMGQD-GHDRGAKVIATAFADLGFDVDIG---------PLFQTPEEAARQAVENDVHVVGVSS 641 (714)
T ss_pred CCceEEEEecCCc-chhHhHHHHHHHHHhCCeeEecC---------CCCCCHHHHHHHHHHcCCCEEEEec
Confidence 5899998765333 23345789999999888776432 1235666666544 4889988753
No 41
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=54.32 E-value=46 Score=36.81 Aligned_cols=87 Identities=10% Similarity=0.058 Sum_probs=51.6
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcC----------cHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEE
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFAN----------AEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWM 197 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~g----------ke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~ 197 (369)
++.|||.+... . -..-+..+|++.++.+|| ++++++++++.-++++...-+.....- ..++|++.
T Consensus 252 ~~fGiP~~~~~-p--~Gi~~T~~~L~~ia~~~g~~~~~~~~~~~~~~~e~~i~~e~~~~~~~l~~~~~~L--~GKrv~i~ 326 (917)
T PRK14477 252 KRYGIPYLEES-F--YGMTDTAKALRDIARELDDAGGGLEKRVLQDRVEKLIAEEEAKCRAALAPYRARL--EGKRVVLF 326 (917)
T ss_pred HHhCCCEEecC-c--cCHHHHHHHHHHHHHHhCCcccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCEEEEE
Confidence 46799987532 1 123345689999999998 477899998887777666554433221 12344432
Q ss_pred eeeCCEEEEeCCChHHHHHHHhCCcccc
Q 044166 198 EFYNGVWSFTKEAFKLKYVEDAGGENVD 225 (369)
Q Consensus 198 ~~~~~~~~~~g~s~~~~li~~AGg~nv~ 225 (369)
. ++. . --.+..+++..|.+-+.
T Consensus 327 ~--g~~-~---~~~la~~l~elGmevv~ 348 (917)
T PRK14477 327 T--GGV-K---TWSMVNALRELGVEVLA 348 (917)
T ss_pred C--CCc-h---HHHHHHHHHHCCCEEEE
Confidence 1 110 0 11245567777777554
No 42
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=51.34 E-value=1.4e+02 Score=26.34 Aligned_cols=99 Identities=13% Similarity=0.013 Sum_probs=57.8
Q ss_pred hHHHHHHHHHcCcHH--HHHHHHH--HHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEEEeCCChHHHHHHHhCCccc
Q 044166 149 AEWIKFLGIFANAEA--RANQVYN--AVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENV 224 (369)
Q Consensus 149 ~e~ik~lG~l~gke~--~A~~~~~--~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~~~g~s~~~~li~~AGg~nv 224 (369)
..-++.+|.++.+.+ -|++.+. .+++.+..+...........+++|++....++ +..-|...+..+++.+|-+-+
T Consensus 36 ~p~m~~vG~~w~~~~i~va~e~~as~~~~~~l~~l~~~~~~~~~~~~~~vl~~~~~gd-~H~lG~~~v~~~l~~~G~~vi 114 (201)
T cd02070 36 APGMDIVGDKYEEGEIFVPELLMAADAMKAGLDLLKPLLGKSKSAKKGKVVIGTVEGD-IHDIGKNLVATMLEANGFEVI 114 (201)
T ss_pred HHHHHHHHHHHccCCeeHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCeEEEEecCCc-cchHHHHHHHHHHHHCCCEEE
Confidence 346888999988754 3444332 23344444444433322113678877654332 233355677888999998866
Q ss_pred cccCCCcccCccccCCHHHHHHhc--CCCcEEEec
Q 044166 225 DSSINKMTYNISNSDDLEQLHAIL--CTVDVVIDG 257 (369)
Q Consensus 225 ~~~~~~~~~~g~~~vs~E~v~~~~--~npDvii~~ 257 (369)
+- ...++.|.+.+.+ .+||++-+.
T Consensus 115 ~l---------G~~~p~~~l~~~~~~~~~d~v~lS 140 (201)
T cd02070 115 DL---------GRDVPPEEFVEAVKEHKPDILGLS 140 (201)
T ss_pred EC---------CCCCCHHHHHHHHHHcCCCEEEEe
Confidence 43 1356677766532 499998775
No 43
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=49.61 E-value=1.3e+02 Score=26.88 Aligned_cols=99 Identities=11% Similarity=0.035 Sum_probs=60.7
Q ss_pred hHHHHHHHHHcCcHH--HHHHHHH--HHHHHHHHHHHHHhCCC--CCCCCEEEEEeeeCCEEEEeCCChHHHHHHHhCCc
Q 044166 149 AEWIKFLGIFANAEA--RANQVYN--AVKENYLCLTRVAAGKT--KPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGE 222 (369)
Q Consensus 149 ~e~ik~lG~l~gke~--~A~~~~~--~~~~~~~~i~~~~~~~~--~~~kp~V~~~~~~~~~~~~~g~s~~~~li~~AGg~ 222 (369)
..-|+.+|..+.+.+ -|++++. .+++.+..++.+....+ ...+++|++....++ +..-|....+.+++.+|-+
T Consensus 40 ~p~m~~vG~~w~~gei~vaqe~~as~~~~~~l~~l~~~l~~~~~~~~~~~~vvl~t~~gd-~HdiG~~iv~~~l~~~G~~ 118 (213)
T cd02069 40 MDGMKVVGDLFGAGKMFLPQVLKSARVMKAAVAYLEPYMEKEKGENSSKGKIVLATVKGD-VHDIGKNLVGVILSNNGYE 118 (213)
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEeCCCc-hhHHHHHHHHHHHHhCCCE
Confidence 345788899888765 4555443 34455555554444332 124688887654332 2222556788889999988
Q ss_pred cccccCCCcccCccccCCHHHHHHhc--CCCcEEEec
Q 044166 223 NVDSSINKMTYNISNSDDLEQLHAIL--CTVDVVIDG 257 (369)
Q Consensus 223 nv~~~~~~~~~~g~~~vs~E~v~~~~--~npDvii~~ 257 (369)
-+.- ...++.|.+.+.+ .+||++.+.
T Consensus 119 Vi~L---------G~~vp~e~~v~~~~~~~~~~V~lS 146 (213)
T cd02069 119 VIDL---------GVMVPIEKILEAAKEHKADIIGLS 146 (213)
T ss_pred EEEC---------CCCCCHHHHHHHHHHcCCCEEEEc
Confidence 7754 2356666666543 389999775
No 44
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=46.97 E-value=72 Score=31.70 Aligned_cols=85 Identities=16% Similarity=0.111 Sum_probs=48.5
Q ss_pred CCCceEEEcCCCCCCchhhHhHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEEEe
Q 044166 129 PQACNFANFAPFGEDGPLRRAEWIKFLGIFANA-EARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFT 207 (369)
Q Consensus 129 ~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gk-e~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~~~ 207 (369)
+.|||++..... ..-+..+|++.++.++|+ ..+++++.++-.+.+....+.-..+ .+ +|++....+.
T Consensus 224 ~~GvP~~~~~pi---G~~~td~~l~~la~~~g~~~~~~e~~~~~e~~~~~~~ld~~~~l---~g-kv~v~g~~~~----- 291 (416)
T cd01980 224 EAGRPIVSGAPV---GADGTAAWLEAVGEALGLDMDQVRKVANEEKAAAKGAIRAFSPI---KG-RVLVSGYEGN----- 291 (416)
T ss_pred HcCCceecCCCc---CchHHHHHHHHHHHHhCcCchhHHHHHHHHHHHHHHHHhhHHhh---Cc-eEEEECCCch-----
Confidence 459997632111 122456899999999997 4567777766555555444333322 23 4543221111
Q ss_pred CCChHHHHHHHhCCccccc
Q 044166 208 KEAFKLKYVEDAGGENVDS 226 (369)
Q Consensus 208 g~s~~~~li~~AGg~nv~~ 226 (369)
--.+++++...|.+-+..
T Consensus 292 -~~~la~~L~elGmevv~~ 309 (416)
T cd01980 292 -ELLVARLLIESGAEVPYV 309 (416)
T ss_pred -hHHHHHHHHHcCCEEEEE
Confidence 123667777888886654
No 45
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=46.07 E-value=61 Score=31.67 Aligned_cols=87 Identities=13% Similarity=0.012 Sum_probs=52.0
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEEEe
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFT 207 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~~~ 207 (369)
++.|+|.+....+ ..-+..+|++.++.++|.++.+++.++..++++...-+.....- ...+|++.. +..
T Consensus 221 ~~~g~p~~~~~p~---G~~~t~~~l~~i~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~l--~g~~~~i~~---~~~--- 289 (399)
T cd00316 221 EKYGIPYILINPI---GLEATDAFLRKLAELFGIEKEVPEVIARERARLLDALADYHEYL--GGKKVAIFG---DGD--- 289 (399)
T ss_pred HHhCCCeEEeCCc---CHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHh--cCCEEEEEC---CCc---
Confidence 4579998876522 23346789999999999877787777777666655544433221 123344321 110
Q ss_pred CCChHHHHHHHhCCcccc
Q 044166 208 KEAFKLKYVEDAGGENVD 225 (369)
Q Consensus 208 g~s~~~~li~~AGg~nv~ 225 (369)
-......++...|.+.+.
T Consensus 290 ~~~~~~~~l~e~G~~v~~ 307 (399)
T cd00316 290 LLLALARFLLELGMEVVA 307 (399)
T ss_pred HHHHHHHHHHHCCCEEEE
Confidence 012244677888988554
No 46
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=45.18 E-value=51 Score=27.67 Aligned_cols=59 Identities=17% Similarity=0.014 Sum_probs=41.1
Q ss_pred CCCEEEEEeeeCCEEEEeCCChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhc--CCCcEEEecC
Q 044166 190 FKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAIL--CTVDVVIDGT 258 (369)
Q Consensus 190 ~kp~V~~~~~~~~~~~~~g~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~--~npDvii~~~ 258 (369)
.||+|++.....+. .-.|..+++..++++|.+-+... ..-+.|++...+ .++|+|.+.+
T Consensus 11 ~rprvlvak~GlDg-Hd~gakvia~~l~d~GfeVi~~g---------~~~tp~e~v~aA~~~dv~vIgvSs 71 (143)
T COG2185 11 ARPRVLVAKLGLDG-HDRGAKVIARALADAGFEVINLG---------LFQTPEEAVRAAVEEDVDVIGVSS 71 (143)
T ss_pred CCceEEEeccCccc-cccchHHHHHHHHhCCceEEecC---------CcCCHHHHHHHHHhcCCCEEEEEe
Confidence 48999987542111 12356789999999999987651 344567777766 6999998764
No 47
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=44.85 E-value=37 Score=27.99 Aligned_cols=58 Identities=12% Similarity=-0.041 Sum_probs=39.0
Q ss_pred CCEEEEEeeeCCEEEEeCCChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhc--CCCcEEEecC
Q 044166 191 KPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAIL--CTVDVVIDGT 258 (369)
Q Consensus 191 kp~V~~~~~~~~~~~~~g~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~--~npDvii~~~ 258 (369)
+|+|++....++. .-.|..++..+++.+|-+-+.. ....|.|++.+.+ .+||++.+.+
T Consensus 2 ~~~v~~a~~g~D~-Hd~g~~iv~~~l~~~GfeVi~l---------g~~~s~e~~v~aa~e~~adii~iSs 61 (132)
T TIGR00640 2 RPRILVAKMGQDG-HDRGAKVIATAYADLGFDVDVG---------PLFQTPEEIARQAVEADVHVVGVSS 61 (132)
T ss_pred CCEEEEEeeCCCc-cHHHHHHHHHHHHhCCcEEEEC---------CCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 6888887643322 2235778999999999987754 1245666665543 4999998754
No 48
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=43.20 E-value=1.1e+02 Score=31.04 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=48.9
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHc---C----cHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeee
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFA---N----AEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFY 200 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~---g----ke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~ 200 (369)
++.|||.+... ++ ..-+..+|++.++++| + .+++++++++.-++++...-+.....- ...+|++..
T Consensus 259 erfGiP~~~~~-p~--G~~~T~~~l~~la~~~~~~~~~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l--~Gk~vaI~~-- 331 (475)
T PRK14478 259 ERYGIPFFEGS-FY--GIEDTSDSLRQIARLLVERGADAELVERTEALIAEEEAKAWAALEPYRPRL--EGKRVLLYT-- 331 (475)
T ss_pred HHhCCCEEecC-CC--cHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCEEEEEc--
Confidence 56799997532 21 2234568999999999 2 335688888776666655433332221 123444321
Q ss_pred CCEEEEeCCCh-HHHHHHHhCCccccc
Q 044166 201 NGVWSFTKEAF-KLKYVEDAGGENVDS 226 (369)
Q Consensus 201 ~~~~~~~g~s~-~~~li~~AGg~nv~~ 226 (369)
+. ...+ +.+++...|.+.+..
T Consensus 332 -~~----~~~~~la~~l~ElGm~v~~~ 353 (475)
T PRK14478 332 -GG----VKSWSVVKALQELGMEVVGT 353 (475)
T ss_pred -CC----chHHHHHHHHHHCCCEEEEE
Confidence 11 1111 455677888876543
No 49
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=42.06 E-value=16 Score=31.26 Aligned_cols=92 Identities=13% Similarity=-0.083 Sum_probs=40.9
Q ss_pred HHHHHcCcHHHH----HHHHHHHHHHHHHHHHHHh----CCCCCCCCEEEEEeeeCCEEEEeCCChHHHHHHHhCCc---
Q 044166 154 FLGIFANAEARA----NQVYNAVKENYLCLTRVAA----GKTKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGE--- 222 (369)
Q Consensus 154 ~lG~l~gke~~A----~~~~~~~~~~~~~i~~~~~----~~~~~~kp~V~~~~~~~~~~~~~g~s~~~~li~~AGg~--- 222 (369)
.+..++..|.+. .+.+..+.++++..++... ....+.+..+.|+.. +-...++..+|..
T Consensus 24 ~v~~~l~~E~~~gl~~~~~y~~f~~~~~~~~~~l~~~L~~~~~~gk~I~~yGA~----------~kg~tlln~~g~~~~~ 93 (160)
T PF08484_consen 24 SVARLLAEEKALGLNTIEYYENFAKRVEQSKAELREFLEKLKAEGKRIAGYGAG----------AKGNTLLNYFGLDNDL 93 (160)
T ss_dssp HHHHHHHHHHHTTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--EEEE-------------SHHHHHHHHHT--TTT
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCEEEEECcc----------hHHHHHHHHhCCCcce
Confidence 345555566554 3555556665555544332 121123444455432 3344567777763
Q ss_pred --cccccCCC-----cccCccccCCHHHHHHhcCCCcEEEec
Q 044166 223 --NVDSSINK-----MTYNISNSDDLEQLHAILCTVDVVIDG 257 (369)
Q Consensus 223 --nv~~~~~~-----~~~~g~~~vs~E~v~~~~~npDvii~~ 257 (369)
++.++.+. .++++-.-++.|.+.+. .||++|+.
T Consensus 94 I~~vvD~np~K~G~~~PGt~ipI~~p~~l~~~--~pd~vivl 133 (160)
T PF08484_consen 94 IDYVVDDNPLKQGKYLPGTHIPIVSPEELKER--KPDYVIVL 133 (160)
T ss_dssp S--EEES-GGGTTEE-TTT--EEEEGGG--SS----SEEEES
T ss_pred eEEEEeCChhhcCcccCCCCCeECCHHHHhhC--CCCEEEEc
Confidence 33332111 12333445899999887 89998875
No 50
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=41.75 E-value=63 Score=32.22 Aligned_cols=48 Identities=19% Similarity=0.261 Sum_probs=33.5
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcH-HHHHHHHHHHHHHH
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAE-ARANQVYNAVKENY 176 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke-~~A~~~~~~~~~~~ 176 (369)
++.|||.+.... .--..-+..+|++.++.++|++ ++++++++.-++++
T Consensus 228 ~~~giP~i~~~~-~P~G~~~t~~~l~~i~~~~g~~~~~~~~~i~~e~~~~ 276 (427)
T cd01971 228 EKYGQPYIHSPT-LPIGAKATAEFLRQVAKFAGIEKAKVEAFIKAEEKRY 276 (427)
T ss_pred HHhCCceEecCC-CccCHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHH
Confidence 578999987631 1012234568999999999998 47888887766653
No 51
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=37.54 E-value=2.5e+02 Score=24.66 Aligned_cols=99 Identities=7% Similarity=-0.029 Sum_probs=57.3
Q ss_pred hHHHHHHHHHcCcHH--HHHHHH--HHHHHHHHHHHHHHhCC-CCCCCCEEEEEeeeCCEEEEeCCChHHHHHHHhCCcc
Q 044166 149 AEWIKFLGIFANAEA--RANQVY--NAVKENYLCLTRVAAGK-TKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGEN 223 (369)
Q Consensus 149 ~e~ik~lG~l~gke~--~A~~~~--~~~~~~~~~i~~~~~~~-~~~~kp~V~~~~~~~~~~~~~g~s~~~~li~~AGg~n 223 (369)
..-++.+|..+.+.+ -|++++ +.+++.+..+....... ....+++|+.....++ +..-|...+..+++.+|-+-
T Consensus 37 ~p~m~~iG~~w~~gei~va~~~~a~~~~~~~l~~l~~~~~~~~~~~~~~~vv~~t~~gd-~H~lG~~~v~~~l~~~G~~v 115 (197)
T TIGR02370 37 MAGMGVVGKLFEDGELFLPHVMMSADAMLAGIKVLTPEMEKAVETEVLGKVVCGVAEGD-VHDIGKNIVVTMLRANGFDV 115 (197)
T ss_pred HHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEeCCCc-hhHHHHHHHHHHHHhCCcEE
Confidence 346888899888754 233322 22344444444444321 1224688877654332 22234556778899999887
Q ss_pred ccccCCCcccCccccCCHHHHHHhc--CCCcEEEec
Q 044166 224 VDSSINKMTYNISNSDDLEQLHAIL--CTVDVVIDG 257 (369)
Q Consensus 224 v~~~~~~~~~~g~~~vs~E~v~~~~--~npDvii~~ 257 (369)
++- ...++.|.+.+.. .+||++-+.
T Consensus 116 i~L---------G~~vp~e~~v~~~~~~~pd~v~lS 142 (197)
T TIGR02370 116 IDL---------GRDVPIDTVVEKVKKEKPLMLTGS 142 (197)
T ss_pred EEC---------CCCCCHHHHHHHHHHcCCCEEEEc
Confidence 754 2356666665533 389998775
No 52
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=35.52 E-value=63 Score=26.80 Aligned_cols=58 Identities=10% Similarity=0.013 Sum_probs=39.6
Q ss_pred CCEEEEEeeeCCEEEEeCCChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhc--CCCcEEEecC
Q 044166 191 KPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAIL--CTVDVVIDGT 258 (369)
Q Consensus 191 kp~V~~~~~~~~~~~~~g~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~--~npDvii~~~ 258 (369)
+++|+.+...++. ..-|...+..+++.+|.+-+.- ...++.|++++.+ .+||++-+++
T Consensus 1 ~~~vvigtv~~D~-HdiGk~iv~~~l~~~GfeVi~L---------G~~v~~e~~v~aa~~~~adiVglS~ 60 (134)
T TIGR01501 1 KKTIVLGVIGSDC-HAVGNKILDHAFTNAGFNVVNL---------GVLSPQEEFIKAAIETKADAILVSS 60 (134)
T ss_pred CCeEEEEEecCCh-hhHhHHHHHHHHHHCCCEEEEC---------CCCCCHHHHHHHHHHcCCCEEEEec
Confidence 3677776543332 2225667888999999987754 2467888888765 4799997754
No 53
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=35.28 E-value=1.2e+02 Score=29.66 Aligned_cols=87 Identities=13% Similarity=0.020 Sum_probs=42.4
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEEEe
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFT 207 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~~~ 207 (369)
++.|||.+.+.... ..-+..+|++.++.++|++. +++.+...++++.+.-......- ...+|++.. +.
T Consensus 213 e~~giP~~~~~~p~--G~~~t~~~l~~i~~~lg~~~-~~~~i~~~~~~~~~~l~~~~~~l--~g~~v~i~~---~~---- 280 (398)
T PF00148_consen 213 ERFGIPYLYFPSPY--GIEGTDAWLRAIAEALGKPI-AEAEIAEERERAEDALADYRERL--GGKRVAIYG---DP---- 280 (398)
T ss_dssp HHHT-EEEEEC-SB--SHHHHHHHHHHHHHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHH--TT-EEEEES---SH----
T ss_pred HHhCCCeeeccccc--cHHHHHHHHHHHHHHhCCch-hhHHHHHHHHHHHHHHHhhHHhh--cCceEEEEc---Cc----
Confidence 56799999853211 22345689999999999443 33333333333222211121111 124455422 11
Q ss_pred C-CChHHHHHHHhCCccccc
Q 044166 208 K-EAFKLKYVEDAGGENVDS 226 (369)
Q Consensus 208 g-~s~~~~li~~AGg~nv~~ 226 (369)
. .--..+++...|.+.+..
T Consensus 281 ~~~~~l~~~L~elG~~v~~v 300 (398)
T PF00148_consen 281 DRALGLARFLEELGMEVVAV 300 (398)
T ss_dssp HHHHHHHHHHHHTT-EEEEE
T ss_pred hhHHHHHHHHHHcCCeEEEE
Confidence 1 113556677888886654
No 54
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=35.00 E-value=96 Score=30.97 Aligned_cols=43 Identities=12% Similarity=0.358 Sum_probs=27.3
Q ss_pred CCCCceEEEcCCCCCCchhh---HhHHHHHHHHHcCcHHH-HHHHHHHHHHHH
Q 044166 128 QPQACNFANFAPFGEDGPLR---RAEWIKFLGIFANAEAR-ANQVYNAVKENY 176 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~---~~e~ik~lG~l~gke~~-A~~~~~~~~~~~ 176 (369)
++.|||.+. . .|.| ..+||+.+++++|++.+ .+++++.-+.++
T Consensus 229 ~~~GvP~~~-~-----~PiG~~~Td~fL~~la~~~G~~~~~~~~~i~~er~rl 275 (422)
T TIGR02015 229 EAAGVKIVG-S-----APVGANGTGEWLERIGEALDLDPDTVKTVAEEERQKI 275 (422)
T ss_pred HHcCCceec-c-----CCCChHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 467999642 1 2443 46899999999998633 555444444433
No 55
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=30.56 E-value=90 Score=25.85 Aligned_cols=59 Identities=12% Similarity=0.030 Sum_probs=39.0
Q ss_pred CCCEEEEEeeeCCEEEEeCCChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhc--CCCcEEEecC
Q 044166 190 FKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAIL--CTVDVVIDGT 258 (369)
Q Consensus 190 ~kp~V~~~~~~~~~~~~~g~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~--~npDvii~~~ 258 (369)
++|+|+.....++ ...-|...+..+++.+|-+-++- ...++.|++.+.+ .+||++.++.
T Consensus 2 ~~~~vl~~~~~gD-~H~lG~~iv~~~lr~~G~eVi~L---------G~~vp~e~i~~~a~~~~~d~V~lS~ 62 (137)
T PRK02261 2 KKKTVVLGVIGAD-CHAVGNKILDRALTEAGFEVINL---------GVMTSQEEFIDAAIETDADAILVSS 62 (137)
T ss_pred CCCEEEEEeCCCC-hhHHHHHHHHHHHHHCCCEEEEC---------CCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 3678877654332 22224456778899999987765 2457778877654 4899998754
No 56
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=29.78 E-value=1.5e+02 Score=29.54 Aligned_cols=47 Identities=9% Similarity=0.051 Sum_probs=29.2
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHH-HHHHHHHHHHHH
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEAR-ANQVYNAVKENY 176 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~-A~~~~~~~~~~~ 176 (369)
++.|+|.+...-- -..-+..+|++.+++++|++.. +++.++...+++
T Consensus 230 ~~~GiP~~~~~~P--~G~~~T~~~L~~la~~~g~~~~~~~~~~~~er~~~ 277 (427)
T PRK02842 230 RERGAKVLTAPFP--LGPEGTRAWLEAAAAAFGIDPDGLEEREAPAWERA 277 (427)
T ss_pred HHcCCccccCCCC--cChHHHHHHHHHHHHHhCcCHhHHHHHHHHHHHHH
Confidence 4568887755310 1122356799999999998744 656555554443
No 57
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=28.41 E-value=1.4e+02 Score=24.53 Aligned_cols=52 Identities=23% Similarity=0.294 Sum_probs=30.7
Q ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEEEeCCChHHHHHHHh
Q 044166 156 GIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDA 219 (369)
Q Consensus 156 G~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~~~g~s~~~~li~~A 219 (369)
-.++|+.-..+.+++.+. .-.++-. .+||-|+...+..| .|.+|+++||..+
T Consensus 25 ~~l~GQhla~~~v~~ai~-------~~l~~~~-p~KpLVlSfHG~tG----tGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIK-------GHLANPN-PRKPLVLSFHGWTG----TGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHH-------HHHcCCC-CCCCEEEEeecCCC----CcHHHHHHHHHHH
Confidence 456776554444444443 3333322 36899987654333 3789999999643
No 58
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=26.39 E-value=90 Score=25.68 Aligned_cols=42 Identities=12% Similarity=0.064 Sum_probs=31.6
Q ss_pred CCChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhc--CCCcEEEecC
Q 044166 208 KEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAIL--CTVDVVIDGT 258 (369)
Q Consensus 208 g~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~--~npDvii~~~ 258 (369)
|...+..+++.+|.+-+.- ...++.|++++.+ .+||++-+++
T Consensus 15 Gkniv~~~L~~~GfeVidL---------G~~v~~e~~v~aa~~~~adiVglS~ 58 (128)
T cd02072 15 GNKILDHAFTEAGFNVVNL---------GVLSPQEEFIDAAIETDADAILVSS 58 (128)
T ss_pred HHHHHHHHHHHCCCEEEEC---------CCCCCHHHHHHHHHHcCCCEEEEec
Confidence 4567888999999887754 2567888888765 4899998754
No 59
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=23.84 E-value=69 Score=27.41 Aligned_cols=19 Identities=32% Similarity=0.261 Sum_probs=16.5
Q ss_pred ccCCHHHHHHhcCCCcEEEec
Q 044166 237 NSDDLEQLHAILCTVDVVIDG 257 (369)
Q Consensus 237 ~~vs~E~v~~~~~npDvii~~ 257 (369)
...|.|.|++. +||++|..
T Consensus 58 ~~~n~E~ll~l--~PDlii~~ 76 (186)
T cd01141 58 GSLNVELIVAL--KPDLVILY 76 (186)
T ss_pred CCCCHHHHhcc--CCCEEEEe
Confidence 46899999998 99999874
No 60
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=22.43 E-value=1.8e+02 Score=29.04 Aligned_cols=86 Identities=8% Similarity=-0.072 Sum_probs=44.1
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEEEe
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFT 207 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~~~ 207 (369)
++.|||.+...-.. ..-+..+|++.++.++|++. .+.++..++++.+.-......- ...+|++.. +..+
T Consensus 246 ~~~giP~~~~~~p~--G~~~t~~~l~~l~~~~g~~~--~~~i~~er~~~~~~~~~~~~~l--~gkrv~i~g---~~~~-- 314 (435)
T cd01974 246 KKCKVPVETLNMPI--GVAATDEFLMALSELTGKPI--PEELEEERGRLVDAMTDSHQYL--HGKKFALYG---DPDF-- 314 (435)
T ss_pred HHhCCCeeecCCCc--ChHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHHHHhc--CCCEEEEEc---ChHH--
Confidence 57899988764111 12345689999999999873 2234443333333222222111 124454421 1000
Q ss_pred CCChHHHHHHHhCCcccc
Q 044166 208 KEAFKLKYVEDAGGENVD 225 (369)
Q Consensus 208 g~s~~~~li~~AGg~nv~ 225 (369)
---+++++...|.+.+.
T Consensus 315 -~~~la~~L~elGm~v~~ 331 (435)
T cd01974 315 -LIGLTSFLLELGMEPVH 331 (435)
T ss_pred -HHHHHHHHHHCCCEEEE
Confidence 11245667778888644
No 61
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=22.18 E-value=4.6e+02 Score=26.63 Aligned_cols=48 Identities=13% Similarity=0.057 Sum_probs=26.1
Q ss_pred CCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccCCCcc-ccceeeC-cEEEeccCCCCC
Q 044166 239 DDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKSC-FAFLTNQ-SLWRFDKRNQNS 301 (369)
Q Consensus 239 vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~AVkng-rVy~~~~~~~p~ 301 (369)
.+.+.+. ++|+||+... |+....+ ..|.. .+|.++| +|+.++.+..+.
T Consensus 150 ~~~~d~~----~ad~il~~G~--Np~~s~p---------~~~~~~~~a~~~GaklivvDPr~t~t 199 (501)
T cd02766 150 NDPEDMV----NADLIVIWGI--NPAATNI---------HLMRIIQEARKRGAKVVVIDPYRTAT 199 (501)
T ss_pred CCHHHHh----cCCEEEEECC--Chhhhch---------hHHHHHHHHHHCCCEEEEECCCCCcc
Confidence 4566654 7899988642 3321111 01111 2455666 899998776554
No 62
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=21.50 E-value=84 Score=26.86 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=16.5
Q ss_pred ccCCHHHHHHhcCCCcEEEec
Q 044166 237 NSDDLEQLHAILCTVDVVIDG 257 (369)
Q Consensus 237 ~~vs~E~v~~~~~npDvii~~ 257 (369)
..+++|.|++. +||+||..
T Consensus 49 ~~~n~E~l~~l--~PDlii~~ 67 (195)
T cd01143 49 SNPNVEKIVAL--KPDLVIVS 67 (195)
T ss_pred CCCCHHHHhcc--CCCEEEEc
Confidence 46899999998 99999874
No 63
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=20.49 E-value=2.1e+02 Score=28.81 Aligned_cols=45 Identities=11% Similarity=0.176 Sum_probs=28.1
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHH
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENY 176 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~ 176 (369)
++.|||.+...... ..-+..+|++.++.++|++ +.+.++..++++
T Consensus 254 e~~GiP~~~~~~p~--G~~~t~~~l~~l~~~~g~~--~~~~i~~er~~~ 298 (455)
T PRK14476 254 ARTGVPYLVFPSLT--GLEAVDRFIATLAQISGRP--VPAKYRRQRAQL 298 (455)
T ss_pred HHhCCCeEecCCCc--ChHHHHHHHHHHHHHHCCC--CcHHHHHHHHHH
Confidence 57899988653211 1223468999999999975 334444444333
Done!