Query 044166
Match_columns 369
No_of_seqs 274 out of 1471
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 21:05:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/044166.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/044166hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3psh_A Protein HI_1472; substr 100.0 5.5E-35 1.9E-39 279.0 14.7 262 55-340 12-319 (326)
2 4hn9_A Iron complex transport 100.0 2E-34 6.7E-39 276.5 17.4 261 55-340 46-329 (335)
3 2r7a_A Bacterial heme binding 100.0 9.1E-33 3.1E-37 254.8 18.9 238 60-328 1-256 (256)
4 2r79_A Periplasmic binding pro 100.0 3.4E-32 1.2E-36 254.8 20.2 242 60-329 1-263 (283)
5 2etv_A Iron(III) ABC transport 100.0 1.4E-33 4.7E-38 271.8 8.6 260 54-340 19-316 (346)
6 2q8p_A Iron-regulated surface 100.0 3.2E-32 1.1E-36 251.5 12.5 242 59-327 2-260 (260)
7 3md9_A Hemin-binding periplasm 100.0 3.8E-32 1.3E-36 250.4 11.5 235 61-328 2-254 (255)
8 3lhs_A Ferrichrome ABC transpo 100.0 5E-31 1.7E-35 248.1 14.3 253 55-328 17-294 (296)
9 3gfv_A Uncharacterized ABC tra 100.0 4.3E-31 1.5E-35 249.5 12.7 253 55-328 28-298 (303)
10 2chu_A CEUE, enterochelin upta 100.0 5E-30 1.7E-34 241.5 16.4 248 55-325 30-295 (296)
11 3r5t_A Ferric vibriobactin ABC 100.0 7.3E-30 2.5E-34 241.5 14.8 248 54-329 16-290 (305)
12 3be6_A Putative iron compound- 100.0 1.1E-29 3.7E-34 238.9 12.6 250 55-329 14-292 (297)
13 1efd_N Ferrichrome-binding per 100.0 5.2E-30 1.8E-34 237.6 9.9 244 59-327 3-264 (266)
14 2x4l_A Ferric-siderophore rece 100.0 8E-30 2.7E-34 243.3 10.6 250 55-329 39-322 (325)
15 3tny_A YFIY (ABC transport sys 100.0 4.9E-30 1.7E-34 242.2 8.9 248 55-325 28-295 (303)
16 3g9q_A Ferrichrome-binding pro 100.0 3.9E-30 1.3E-34 240.1 7.8 247 55-328 8-272 (279)
17 3tlk_A Ferrienterobactin-bindi 100.0 3.6E-28 1.2E-32 232.0 18.0 249 55-329 40-322 (326)
18 3tef_A VCTP, iron(III) ABC tra 100.0 6E-29 2E-33 232.6 9.8 252 55-325 13-281 (292)
19 1n2z_A Vitamin B12 transport p 100.0 2.5E-28 8.5E-33 223.7 12.2 225 60-328 1-244 (245)
20 4b8y_A FHUD2; transport protei 99.9 7.1E-28 2.4E-32 224.6 10.1 243 55-325 16-272 (277)
21 3mwf_A Iron-regulated ABC tran 99.9 1.5E-28 5.1E-33 231.5 5.4 254 55-328 15-294 (298)
22 2wi8_A Iron-uptake system-bind 99.9 9.1E-28 3.1E-32 227.7 9.6 249 55-328 29-298 (311)
23 4h59_A PIAA, iron-compound ABC 99.9 1.3E-24 4.5E-29 204.4 7.9 229 55-296 16-274 (308)
24 3ezx_A MMCP 1, monomethylamine 59.6 20 0.0007 30.8 6.7 98 149-256 44-149 (215)
25 3pdi_A Nitrogenase MOFE cofact 57.3 15 0.00052 35.9 6.1 86 128-226 271-361 (483)
26 1mio_A Nitrogenase molybdenum 50.7 44 0.0015 33.0 8.3 87 128-226 274-364 (533)
27 3u7q_A Nitrogenase molybdenum- 48.5 28 0.00096 34.1 6.3 87 128-226 288-377 (492)
28 3aek_A Light-independent proto 46.0 15 0.00053 35.3 4.0 89 128-226 247-337 (437)
29 2xij_A Methylmalonyl-COA mutas 43.7 42 0.0014 34.7 6.9 79 165-258 583-663 (762)
30 1req_A Methylmalonyl-COA mutas 37.7 34 0.0011 35.3 5.1 77 167-258 577-655 (727)
31 2yxb_A Coenzyme B12-dependent 30.6 39 0.0013 27.5 3.5 59 190-258 17-77 (161)
32 1ccw_A Protein (glutamate muta 29.6 29 0.001 27.4 2.5 58 191-258 3-62 (137)
33 3bul_A Methionine synthase; tr 22.8 1.7E+02 0.0057 29.2 7.1 100 149-258 50-157 (579)
34 2i2x_B MTAC, methyltransferase 21.4 1E+02 0.0036 27.0 4.8 99 149-258 78-182 (258)
No 1
>3psh_A Protein HI_1472; substrate binding protein, periplasmic binding protein, MOLY binding protein, metal transport; 1.50A {Haemophilus influenzae} PDB: 3psa_A
Probab=100.00 E-value=5.5e-35 Score=279.03 Aligned_cols=262 Identities=11% Similarity=0.053 Sum_probs=189.0
Q ss_pred eEEEecCceEEEec-CCccc-cccCCCCcEEEecCCCcC--cHHHHhh-hcCCcccccCCC---chhhhccCceEE--ec
Q 044166 55 KSFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTSESVA--SGCVLKL-YQGGEIGLVNKS---EPLQFSQYAAHF--TT 124 (369)
Q Consensus 55 ~~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~--~p~~~~~-~~~g~i~~~G~~---n~E~i~~l~P~~--~~ 124 (369)
.+|+.|++|||+.+ +.+++ .+||+.|+|||++..... .+.+... ....+++.+|.. |+|+|++++|+| .+
T Consensus 12 v~i~~~p~RIv~l~~~~~e~l~aLg~~d~iVg~~~~~~~~~~~~~~~~~~~~~~ip~vG~~~~~n~E~i~~l~PDlIi~~ 91 (326)
T 3psh_A 12 VTIPDHINRAVVLQHQTLNIAVQLDATKQIVGVLSNWKKQLGKNYVRLAPELENMAMPGDLNSVNIESLLALKPDVVFVT 91 (326)
T ss_dssp EEECSSCSCEEEECHHHHHHHHHTTCGGGEEEECTTHHHHHCTTGGGTCGGGGGCBCCBCSSCBCHHHHHHTCCSEEEEE
T ss_pred EEcCCCCCEEEEcCccHHHHHHhcCCCCcEEEeccccccccchhHHHhChhhhcCCcCCCCCCCCHHHHHccCCCEEEEe
Confidence 56778899999954 45677 999999999999741100 0001000 011346667753 999999999954 23
Q ss_pred CC-C-------CCCCceEEEcCCCCCC-------c----------hhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHH
Q 044166 125 DS-D-------QPQACNFANFAPFGED-------G----------PLRRAEWIKFLGIFANAEARANQVYNAVKENYLCL 179 (369)
Q Consensus 125 ~~-~-------~~~gIpvv~~~~~~e~-------~----------pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i 179 (369)
.. . ++.||||+.+...... . ..+..++|+.+|++||+|++|++++++++++++++
T Consensus 92 ~~~~~~~~~~L~~~Gipvv~~~~~~~~~~~~~~~~pt~~~~~~~~~~~~~~~i~~lg~~lg~e~~A~~li~~~~~~~~~v 171 (326)
T 3psh_A 92 NYAPSEMIKQISDVNIPVVAISLRTGEVGEKGKLNPTLTDEDKAYNDGLKQGIELIAEVFEKKQQGDELVKAAFANRKLL 171 (326)
T ss_dssp TTCCHHHHHHHHTTTCCEEEECSCCSCGGGTTCSSCCCTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTHHHH
T ss_pred CCCChHHHHHHHHcCCCEEEEeccccccccccccccccccccchhhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22 1 5789999987533210 0 14567899999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCEEEEEeeeCCEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecC
Q 044166 180 TRVAAGKTKPFKPIVAWMEFYNGVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGT 258 (369)
Q Consensus 180 ~~~~~~~~~~~kp~V~~~~~~~~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~ 258 (369)
++++++++..+||+|++.. +.+++.| +++.++++++|||+|++.+. ..++..+|+|+|+++ |||+||+..
T Consensus 172 ~~~~~~~~~~~~~~v~~~~---~~~~~~g~~s~~~~~i~~aG~~n~~~~~----~~~~~~vs~E~l~~~--~PDvIi~~~ 242 (326)
T 3psh_A 172 ADRLGDVSADKRVRTYMAN---PDLGTYGSGKYTGLMMEHAGAYNVAAAT----IKGFKQVSLENVLEW--NPAVILVQD 242 (326)
T ss_dssp HHHHTTCCTTTSEEEEECB---TTTEEECBSSHHHHHHHHTTEEETTTTT----CBSEEECCHHHHHHH--CCSEEEECT
T ss_pred HHHHccCCcccCcEEEEEc---CcceeecCCccHHHHHHHcCCEeccccc----cCCCceeCHHHHHhh--CCCEEEEeC
Confidence 9999987655689998742 3356666 89999999999999998732 235789999999999 999999853
Q ss_pred CCCCCCCCChhhHHhhcccCCCccccceeeCcEEEeccCCCCCcCcccccccCCCHH---HHHHHHHHHhCCC--Ccc--
Q 044166 259 YTLEPANYTQSTFLENIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQ---LVLADLTEALFPT--GNY-- 331 (369)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~---~vL~dla~~lhPe--~~~-- 331 (369)
. .. ....+..++|.|++++||||||||.++. +... |.. ..|. ..+++||++|||| .+.
T Consensus 243 ~--~~-----~~~~~l~~~p~~~~l~AVk~grV~~~~~-----~~~~-~~~--~~p~~~~~~~~~lA~~l~Pe~f~d~d~ 307 (326)
T 3psh_A 243 R--YP-----DVVPQILNDQGWANIQALKDKKVFLMPE-----YAKA-WGY--PMPEALALGEVWLAKALYPQRFQDVDL 307 (326)
T ss_dssp T--CT-----THHHHHHTCGGGTTSHHHHTTCEEECCT-----TCCC-CSS--CCHHHHHTHHHHHHHHHCGGGCTTCCH
T ss_pred C--Cc-----hhHHHHhcCCCcccCChhhCCcEEEcCC-----CCcc-cCC--CChhHHHHHHHHHHHhhChhhccCCCh
Confidence 1 11 1233334579999999999999999953 2222 332 2343 3478999999999 332
Q ss_pred ---ccccccccc
Q 044166 332 ---TITYFRNIA 340 (369)
Q Consensus 332 ---~~~yy~~l~ 340 (369)
...||+++.
T Consensus 308 ~~~~~~~y~~f~ 319 (326)
T 3psh_A 308 DKMVNDYYQKFY 319 (326)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 358888876
No 2
>4hn9_A Iron complex transport system substrate-binding P; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.85A {Eubacterium eligens}
Probab=100.00 E-value=2e-34 Score=276.48 Aligned_cols=261 Identities=15% Similarity=0.133 Sum_probs=192.3
Q ss_pred eEEEecCceEEEec-CCccc-cccCCCCcEEEecCCCcCcHHHHhhh-cCCcccccCCC---chhhhccCceEE--ecCC
Q 044166 55 KSFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTSESVASGCVLKLY-QGGEIGLVNKS---EPLQFSQYAAHF--TTDS 126 (369)
Q Consensus 55 ~~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~-~~g~i~~~G~~---n~E~i~~l~P~~--~~~~ 126 (369)
.+|+.|++|||+.. ...++ .+||+.|+|||++......+.+.... +..+++.+|.. |+|+|++++|+| .+..
T Consensus 46 v~i~~~p~RIV~l~~~~~e~l~aLG~~d~iVgv~~~~~~~~~~~~~~~~~~~~p~vG~~~~~n~E~i~al~PDLIi~~~~ 125 (335)
T 4hn9_A 46 VTFEKAPEKIASSYYISTSLLLALGLQDKLVGIEAKANTRNIYKLAAPAIVSLPNMGTAKEFNTEACVAATPDVVFLPMK 125 (335)
T ss_dssp EEESSCCSSEEECSHHHHHHHHHTTCGGGEEEEETTGGGCHHHHHHCGGGGGSCEEEETTEECHHHHHHTCCSEEEEEGG
T ss_pred EECCCCCCEEEECCccHHHHHHHhCCCCeEEEecCccccchhHHhhCHHHhhCCccCCCCCCCHHHHHhcCCCEEEEeCc
Confidence 46777899999954 45677 99999999999984211122221110 11246667653 999999999955 2222
Q ss_pred C-------CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEee
Q 044166 127 D-------QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEF 199 (369)
Q Consensus 127 ~-------~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~ 199 (369)
. ++.||||+.+.. .+.....++|+.+|++||+|++|+++++++++++++++++++.. +||+|++...
T Consensus 126 ~~~~~~~L~~~gipvv~~~~---~~~~~~~~~i~~lg~~lg~e~~A~~li~~~~~~~~~i~~~~~~~---~~~~v~~~~~ 199 (335)
T 4hn9_A 126 LKKTADTLESLGIKAVVVNP---EDQSLLEECITLVGKITNNAGRAEALNNSIKTFLADNKTNVSGG---NTPSVYLAGN 199 (335)
T ss_dssp GHHHHHHHHHTTCCEEEECC---CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTTS---CCCEEEEECS
T ss_pred chhHHHHHHHcCCCEEEEcC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcccc---CCCEEEEEeC
Confidence 1 478999998852 23456789999999999999999999999999999999876542 5899987643
Q ss_pred eCCEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccC
Q 044166 200 YNGVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAA 278 (369)
Q Consensus 200 ~~~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~ 278 (369)
.+.+++.| +++.+++|++|||+|++.+.. ..++..+|+|+|+++ |||+||+... .....+ +..++|
T Consensus 200 -~~~~~~~g~~s~~~~ll~~aG~~n~~~~~~---~~~~~~vs~E~l~~~--~PDvIi~~~~----~~~~~~---~l~~~p 266 (335)
T 4hn9_A 200 -SSVLSTAGSKMYQNTLLTNAGGKNVASELT---DTYWANVSYEQILAW--NPDYIVIAAD----ATYTVD---DILNDA 266 (335)
T ss_dssp -SCTTEECCTTSHHHHHHHHTTCEETTTTCC---CSSCEECCHHHHHHH--CCSEEEECTT----CSSCHH---HHHTCG
T ss_pred -CCcceecCCCchHHHHHHHhCCEEcccccc---CCCCcccCHHHHHHh--CCCEEEEeCC----CCCCHH---HHhcCc
Confidence 34577777 899999999999999998542 235789999999999 9999998532 112222 333479
Q ss_pred CCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCCC--Cc-----cccccccccc
Q 044166 279 DKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPT--GN-----YTITYFRNIA 340 (369)
Q Consensus 279 ~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhPe--~~-----~~~~yy~~l~ 340 (369)
.|++++||||||||.++.. ...|+..++..+ ..+++||++|||| ++ ....||+++.
T Consensus 267 ~~~~l~AVk~grV~~~~~~-----~~~w~~~~p~~~-~~~~~la~~l~Pe~f~d~d~~~~~~~~y~~f~ 329 (335)
T 4hn9_A 267 NLAGCNAVKNKNVVKLPNN-----IEAWDSPVPGSF-LGSIYIASVLHPEKVTKDFYETCVTKFYESFY 329 (335)
T ss_dssp GGTTSHHHHTTCEEECCCS-----SCCTTSCCGGGH-HHHHHHHHHHCTTTSCHHHHHHHHHHHHHHHH
T ss_pred CcCcCchhhcCeEEEeCCC-----cccccCCCchHH-HHHHHHHHHhCcccccccCHHHHHHHHHHHHh
Confidence 9999999999999999542 233555565544 4578999999999 33 2358888876
No 3
>2r7a_A Bacterial heme binding protein; periplasmic binding protein, heme transport, transport protein; HET: HEM; 2.05A {Shigella dysenteriae} PDB: 2rg7_A
Probab=100.00 E-value=9.1e-33 Score=254.76 Aligned_cols=238 Identities=11% Similarity=0.036 Sum_probs=177.1
Q ss_pred cCceEEEec-CCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCCC---chhhhccCceEE--ecCC--C---
Q 044166 60 PMSNYSVDT-DFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKS---EPLQFSQYAAHF--TTDS--D--- 127 (369)
Q Consensus 60 Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~~---n~E~i~~l~P~~--~~~~--~--- 127 (369)
|++|||+.+ ...++ .+||+.|+|||++....+.|.+ .+++.+|.. |+|+|++++|+| .+.. .
T Consensus 1 ~p~RIv~l~~~~~e~l~aLG~~d~iVg~~~~~~~p~~~------~~~p~vg~~~~~n~E~i~~l~PDLIi~~~~~~~~~~ 74 (256)
T 2r7a_A 1 AAERIVVAGGSLTELIYAMGAGERVVGVDETTSYPPET------AKLPHIGYWKQLSSEGILSLRPDSVITWQDAGPQIV 74 (256)
T ss_dssp -CCSEEEESHHHHHHHHHTTCGGGEEEECTTCCCSGGG------GGSCBCSCTTSCCHHHHHTTCCSEEEEETTCSCHHH
T ss_pred CCCeEEEcCccHHHHHHHcCCCCeEEEEeCCCCChHHH------hcCCccCCCCCCCHHHHHccCCCEEEEcCCCCCHHH
Confidence 689999954 45677 9999999999998411122332 245666643 999999999955 2222 1
Q ss_pred ----CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeC-C
Q 044166 128 ----QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYN-G 202 (369)
Q Consensus 128 ----~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~-~ 202 (369)
++.||||+.+... ..+.....++++.+|++||+|++|++++++++++++++++++++ . +++|+|++....+ +
T Consensus 75 ~~~L~~~gipvv~~~~~-~~~~~~~~~~i~~lg~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~ 151 (256)
T 2r7a_A 75 LDQLRAQKVNVVTLPRV-PATLEQMYANIRQLAKTLQVPEQGDALVTQINQRLERVQQNVAA-K-KAPVKAMFILSAGGS 151 (256)
T ss_dssp HHHHHHTTCEEEEECCC-SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHTT-C-SSCCEEEEEECCTTS
T ss_pred HHHHHHcCCcEEEecCC-CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhc-C-CCCceEEEEEEcCCC
Confidence 4789999987521 22456678999999999999999999999999999999999876 2 1279998776554 3
Q ss_pred EEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccCCCc
Q 044166 203 VWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKS 281 (369)
Q Consensus 203 ~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (369)
.+++.| +|+.++++++||++| +.+ . .++..+|+|+|+++ |||+||+....... ...+..++|.|+
T Consensus 152 ~~~~~g~~s~~~~~~~~~G~~n-~~~---~--~~~~~is~E~l~~~--~PDvI~~~~~~~~~------~~~~~~~~p~~~ 217 (256)
T 2r7a_A 152 APQVAGKGSVADAILSLAGAEN-VAT---H--QQYKSYSAESLIAA--NPEVIVVTSQMVDG------DINRLRSIAGIT 217 (256)
T ss_dssp CCEEECBTCHHHHHHHHTTCEE-CCC---S--BSEECCCHHHHHHH--CCSEEEEEHHHHTT------CGGGGGGBTTGG
T ss_pred CcEEECCCchHHHHHHHhCCcc-ccc---C--CCCCccCHHHHHHh--CCCEEEEecCCcch------hHHHHHhCcCcc
Confidence 677777 899999999999999 763 2 25778999999999 99999975311100 112334579999
Q ss_pred cccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCCC
Q 044166 282 CFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPT 328 (369)
Q Consensus 282 ~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhPe 328 (369)
+++||||||||.++.. .|+..|+..+ ..+++|+++|||+
T Consensus 218 ~l~AVk~~rV~~~~~~-------~~~~~gp~~~-~~~~~la~~l~P~ 256 (256)
T 2r7a_A 218 HTAAWKNQRIITVDQN-------LILGMGPRIA-DVVESLHQQLWPQ 256 (256)
T ss_dssp GSHHHHTTCEEEECHH-------HHSSCCTTHH-HHHHHHHHHHSCC
T ss_pred cChHHHcCcEEEECcc-------hhcCCCCcHH-HHHHHHHHHhcCC
Confidence 9999999999999642 1334455544 4789999999996
No 4
>2r79_A Periplasmic binding protein; heme transport, transport prote; HET: HEM; 2.40A {Pseudomonas aeruginosa}
Probab=100.00 E-value=3.4e-32 Score=254.77 Aligned_cols=242 Identities=14% Similarity=0.050 Sum_probs=180.1
Q ss_pred cCceEEEec-CCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCCC---chhhhccCceEE--ecCC--C---
Q 044166 60 PMSNYSVDT-DFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKS---EPLQFSQYAAHF--TTDS--D--- 127 (369)
Q Consensus 60 Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~~---n~E~i~~l~P~~--~~~~--~--- 127 (369)
+++|||+.+ ...++ .+||+.|+|||++....+.+.+ .+++.+|.. |+|+|++++|+| .+.. .
T Consensus 1 ~P~RIV~l~~~~~e~l~aLG~~d~iVg~~~~~~~p~~~------~~~p~vg~~~~~n~E~i~~l~PDLIi~~~~~~~~~~ 74 (283)
T 2r79_A 1 LPQRWVSAGGSLSEWVVALGGESKLVGVDTTSQHPQAL------KQLPSVGYQRQLAAEGVLALRPDILIGTEEMGPPPV 74 (283)
T ss_dssp CCCSEEECSHHHHHHHHHTTCGGGEEEECTTCCCSGGG------GGSCBCCCGGGCCHHHHHTTCCSEEEECTTCCCHHH
T ss_pred CCcEEEEcCCcHHHHHHHcCCCCceEEecCCCCCCHHH------hcCCccCCCCCCCHHHHHhcCCCEEEEeCccCcHHH
Confidence 478999954 45677 9999999999998421111222 135666643 999999999955 2221 1
Q ss_pred ----CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCCEEEEEeeeCC
Q 044166 128 ----QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTK-PFKPIVAWMEFYNG 202 (369)
Q Consensus 128 ----~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~-~~kp~V~~~~~~~~ 202 (369)
++.||||+.+... .+.....++|+++|++||+|++|++++++++++++++++++++++. .+||+|++....++
T Consensus 75 ~~~L~~~gipvv~~~~~--~~~~~~~~~i~~lg~~~g~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 152 (283)
T 2r79_A 75 LKQLEGAGVRVETLSAK--PDLEALESNLKKLGDWLGVPQRAEAAELDYRQRLRRQADWIAAAQKSQPAPGVLLVIGNAG 152 (283)
T ss_dssp HHHHHHTTCCEEECCCC--SSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCEEEEEEEETT
T ss_pred HHHHHHcCCcEEEecCC--CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCeEEEEEEcCC
Confidence 4689999987432 3455678999999999999999999999999999999999876541 14899987766544
Q ss_pred -EEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhc-ccCC
Q 044166 203 -VWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENI-DAAD 279 (369)
Q Consensus 203 -~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~-~~~~ 279 (369)
.+++.| +|+.++++++|||+|+ . +. .++..+|+|+|+++ |||+||+..... .......+.+ ++|.
T Consensus 153 ~~~~~~g~~s~~~~~i~~aG~~n~-~---~~--~~~~~vs~E~l~~~--~PDvI~~~~~~~----~~~~~~~~~~~~~p~ 220 (283)
T 2r79_A 153 GQLLVAGRNTGGDWVLNRAGARNL-A---TH--EGYKPISVEALAAL--DPVAVVIADRSL----EGDAARAALLKQNPG 220 (283)
T ss_dssp EEEEEECBSSHHHHHHHHTTCEEC-C---CS--BSEECCCHHHHHHH--CCSEEEEEESSC----CHHHHHHHHHHHCGG
T ss_pred CCceEeCCCccHHHHHHHhCCccc-c---cc--CCCcccCHHHHHHh--CCCEEEEecCCC----cchhHHHHHHHhCcc
Confidence 678887 8999999999999999 4 22 35678999999999 999999853211 0112233444 5799
Q ss_pred CccccceeeCcEEEeccCCCCCcCccccc-ccCCCHHHHHHHHHHHhCCCC
Q 044166 280 KSCFAFLTNQSLWRFDKRNQNSLALDWFD-GAVSQPQLVLADLTEALFPTG 329 (369)
Q Consensus 280 ~~~l~AVkngrVy~~~~~~~p~g~~~~~~-~~~~~p~~vL~dla~~lhPe~ 329 (369)
|++++||||||||.++.. .|+. .++..++ .+++|+++|||+.
T Consensus 221 ~~~l~AVk~~rV~~~~~~-------~~~~~~gp~~~~-~~~~la~~l~P~~ 263 (283)
T 2r79_A 221 LAPTRAARDGRLLVLDPT-------LLVGGLGPRLPD-GLAALSAAFYPSA 263 (283)
T ss_dssp GTTSHHHHTTCEEEECGG-------GGSSSSCTTHHH-HHHHHHHHHCTTS
T ss_pred cccccHhhCCEEEEECHH-------HhcCCCCCCHHH-HHHHHHHHhCccc
Confidence 999999999999999642 2333 3555454 5899999999993
No 5
>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein, putative; periplasmic iron-binding protein, structural genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP: c.92.2.4
Probab=100.00 E-value=1.4e-33 Score=271.81 Aligned_cols=260 Identities=9% Similarity=0.023 Sum_probs=183.7
Q ss_pred eeEEEecCceEEEec-CCccc-cccCCCCcEEEecC-CC---cCcHHHHhhhcCCcccccCC------CchhhhccCceE
Q 044166 54 IKSFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTS-ES---VASGCVLKLYQGGEIGLVNK------SEPLQFSQYAAH 121 (369)
Q Consensus 54 ~~~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~-~~---~~~p~~~~~~~~g~i~~~G~------~n~E~i~~l~P~ 121 (369)
..+|+.|++|||+.+ +.+++ .+||+.|+|||++. .. ...|......+..+++.+|. .|+|+|++|+|+
T Consensus 19 ~Vtip~~p~RIV~l~~~~~e~l~aLG~~d~iVGv~~~~~~~~~~~~~~~~~p~~~~~p~vG~~~~~~~~n~E~Ilal~PD 98 (346)
T 2etv_A 19 EVEIPSNVNRIVAVGPGALRLIAYLXATDMVVGVEDFEXLRPYGRPYILAYPELXXLPSVGPGGPGXLPDLESLITLQPD 98 (346)
T ss_dssp EEEEESCCCCEEEESTTHHHHHHHTTCGGGBCCBCTHHHHSCSSCHHHHHCGGGGGSCBSCCCSTTCCCCHHHHHHHCCS
T ss_pred EEecCCCcCEEEEcCCcHHHHHHHHhCcceeeecccccccccccchhhhhCcccccccccccCCCCCCCCHHHHhcCCCC
Confidence 467888999999954 44677 99999999999984 11 12343221111234666664 399999999995
Q ss_pred E--ecCCC--------CCCCceEEEcCCCC--CCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 044166 122 F--TTDSD--------QPQACNFANFAPFG--EDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKP 189 (369)
Q Consensus 122 ~--~~~~~--------~~~gIpvv~~~~~~--e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~ 189 (369)
+ .+... +.+||||+.+.... ..+.....++|+++|++||+|++|+++++++++++++++++++++
T Consensus 99 LIi~~~~~~~~~~~~~~~~GiPvv~~~~~~~~~~~~~~~~~~i~~lG~~lG~e~~A~~li~~~~~~~~~v~~~~~~~--- 175 (346)
T 2etv_A 99 VVFITYVDRXTAXDIQEXTGIPVVVLSYGNLGTFEDEDLFRSIELAGXILGREERAHEVVDFIRXAQEDLVTRSEGV--- 175 (346)
T ss_dssp EEEEESCCHHHHHHHHHHHTSCEEEECCCCTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTTS---
T ss_pred EEEEeCCccchHHHHHHhcCCcEEEEecCccCcccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhhcc---
Confidence 4 33222 46799999875221 122456789999999999999999999999999999999999876
Q ss_pred CCCEEEEEeeeCCEEEEeC-CChHHHH-----HHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCC
Q 044166 190 FKPIVAWMEFYNGVWSFTK-EAFKLKY-----VEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEP 263 (369)
Q Consensus 190 ~kp~V~~~~~~~~~~~~~g-~s~~~~l-----i~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~ 263 (369)
+||+|++.. +.+.| +++.+.+ |++|||+|++++.. .++..+|+|+|+++ |||+||+...
T Consensus 176 ~~p~V~~~~-----~~~~g~~~~~~~~~~~~~i~~aG~~nv~~~~~----~~~~~vs~E~l~~~--nPDvI~~~~~---- 240 (346)
T 2etv_A 176 ESPTVYVGG-----IGYXGAHGIDSTEAXYPPFVVLHARNVVDELG----EGHXFIDPEXLLVW--NPEYIFIDEN---- 240 (346)
T ss_dssp CCCEEEEEC-----CCSSSCCCTTEEEESCHHHHHTTCEETTGGGC----SEEEECCTHHHHHH--CCSEEEEEGG----
T ss_pred CCceEEEEe-----ccccccccccccccchHHHHHcCCEEcccccC----CCccccCHHHHhhc--CCCEEEEeCC----
Confidence 589998752 12223 4444444 99999999998432 25789999999999 9999997421
Q ss_pred CCCChhhHHhhcccCC-CccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCCC--Ccc-----cccc
Q 044166 264 ANYTQSTFLENIDAAD-KSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPT--GNY-----TITY 335 (369)
Q Consensus 264 ~~~~~~~~~~~~~~~~-~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhPe--~~~-----~~~y 335 (369)
.. .....+..++|. |++++||||||||.++. ..||..++.+.-..+.+||++|||| ++. ...|
T Consensus 241 -~~-~~~~~~l~~~p~~w~~l~AVkngrVy~~~~-------~~~~~~~~~~~~~~~~~lak~lyPe~f~d~d~~~~~~ef 311 (346)
T 2etv_A 241 -GL-SLVLDDYSXHREFYESLSAVXRGXVYGILP-------YNYYTTNIGTALADAYFIGKVLYPERFTDIDPEEXADEI 311 (346)
T ss_dssp -GH-HHHHHHHHHCHHHHHTSHHHHTTCEEEECC-------CCTTSCCHHHHHHHHHHHHHHHCGGGCTTCCHHHHHHHH
T ss_pred -cc-hhhHHHHhhCchhhhhhhHHhcCceEeccc-------cccccCCcchHHHHHHHHHHHhCccccCCCCHHHHHHHH
Confidence 10 011223345799 99999999999999952 3466543222223467999999999 333 3578
Q ss_pred ccccc
Q 044166 336 FRNIA 340 (369)
Q Consensus 336 y~~l~ 340 (369)
|+++.
T Consensus 312 y~~f~ 316 (346)
T 2etv_A 312 YEFLL 316 (346)
T ss_dssp HHHHH
T ss_pred HHHHc
Confidence 88876
No 6
>2q8p_A Iron-regulated surface determinant E; helical backbone metal receptor superfamily, metal transport; HET: HEM; 1.95A {Staphylococcus aureus subsp} PDB: 2q8q_A*
Probab=99.97 E-value=3.2e-32 Score=251.53 Aligned_cols=242 Identities=14% Similarity=0.096 Sum_probs=178.5
Q ss_pred ecCceEEEec-CCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCCC---chhhhccCceEEe--cCC-C---
Q 044166 59 IPMSNYSVDT-DFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKS---EPLQFSQYAAHFT--TDS-D--- 127 (369)
Q Consensus 59 ~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~~---n~E~i~~l~P~~~--~~~-~--- 127 (369)
.+++|||+.+ +.+++ .+||+ ++||++......|. .+ .+++.+|.. |+|+|++++|+|+ +.. .
T Consensus 2 ~~P~RIv~l~~~~~e~l~aLG~--~~vgv~~~~~~~~~---~~--~~~~~vg~~~~~n~E~i~~l~PDLIi~~~~~~~~~ 74 (260)
T 2q8p_A 2 SGEFRIVPTTVALTMTLDKLDL--PIVGKPTSYKTLPN---RY--KDVPEIGQPMEPNVEAVKKLKPTHVLSVSTIKDEM 74 (260)
T ss_dssp -CCCCEEECSHHHHHHHHHTTC--CCSCBCCCSSCCCG---GG--TTSCBCCCTTSCCHHHHHHTCCSEEEEEGGGHHHH
T ss_pred CCCCeEEEcChHHHHHHHHcCC--eeEeccCchhhcCH---hh--cCCCccCCCCCCCHHHHHhcCCCEEEecCccCHHH
Confidence 3679999954 45677 99998 89999842211121 11 246777753 9999999999552 221 1
Q ss_pred ----CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCE
Q 044166 128 ----QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGV 203 (369)
Q Consensus 128 ----~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~ 203 (369)
++.||||+++.. .+.....++++.+|++||+|++|+++++++++++++++++++.. .++|+|++....++.
T Consensus 75 ~~~L~~~gipvv~~~~---~~~~~~~~~i~~lg~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~ 149 (260)
T 2q8p_A 75 QPFYKQLNMKGYFYDF---DSLKGMQKSITQLGDQFNRKAQAKELNDHLNSVKQKIENKAAKQ--KKHPKVLILMGVPGS 149 (260)
T ss_dssp HHHHHHHTSCCEEECC---SSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHC--SCCCEEEEEEEETTE
T ss_pred HHHHHHcCCcEEEecC---CCHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhccc--cCCCeEEEEEecCCc
Confidence 467999988752 24556789999999999999999999999999999999988322 258999987665667
Q ss_pred EEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhc-ccCCCc
Q 044166 204 WSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENI-DAADKS 281 (369)
Q Consensus 204 ~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~-~~~~~~ 281 (369)
+++.| +++.++++++|||+|++.+. +.++..+|+|+|+++ |||+||+.... ......+.+.+.+ ++|.|+
T Consensus 150 ~~~~~~~s~~~~l~~~~G~~n~~~~~----~~~~~~vs~E~l~~~--~pDvI~~~~~~--~~~~~~~~~~~~l~~~p~~~ 221 (260)
T 2q8p_A 150 YLVATDKSYIGDLVKIAGGENVIKVK----DRQYISSNTENLLNI--NPDIILRLPHG--MPEEVKKMFQKEFKQNDIWK 221 (260)
T ss_dssp EEEECTTSHHHHHHHHTTCEESCCCC----SSSEEETTTSCTTSC--CCSEEEEEECS--SHHHHHHHHHHHHHHSGGGG
T ss_pred eEeeCCCCcHHHHHHHhCCceeeccC----CCCCccCCHHHHHhh--CCCEEEEeCCC--CcHHHHHHHHHHHhhCcchh
Confidence 88877 89999999999999999842 235778999999998 99999975321 0000011223333 479999
Q ss_pred cccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCC
Q 044166 282 CFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFP 327 (369)
Q Consensus 282 ~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhP 327 (369)
+++||||||||.++.. .|+..+..+....+++|+++|||
T Consensus 222 ~l~AVk~~~V~~~~~~-------~~~~~~~~~~~~~l~~la~~l~P 260 (260)
T 2q8p_A 222 HFKAVKNNHVYDLEEV-------PFGITANVDADKAMTQLYDLFYK 260 (260)
T ss_dssp GCHHHHTTCEEECCTT-------TSCSSCCTTHHHHHHHHHHHHCC
T ss_pred hcchhhCCeEEEeCcc-------cccCCCCCCHHHHHHHHHHhhcC
Confidence 9999999999999642 24334455677779999999998
No 7
>3md9_A Hemin-binding periplasmic protein HMUT; transport protein, alpha beta protein, rigid helical backbon substrate-free, heme transport; 1.50A {Yersinia pestis} PDB: 3nu1_A*
Probab=99.97 E-value=3.8e-32 Score=250.41 Aligned_cols=235 Identities=11% Similarity=0.037 Sum_probs=174.5
Q ss_pred CceEEEec-CCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCC---CchhhhccCceEE--ecCC-C-----
Q 044166 61 MSNYSVDT-DFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNK---SEPLQFSQYAAHF--TTDS-D----- 127 (369)
Q Consensus 61 v~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~---~n~E~i~~l~P~~--~~~~-~----- 127 (369)
++|||+.+ ...++ .+||+.|+|||++... ..|... .+++.+|. .|+|+|++++|+| .+.. .
T Consensus 2 P~RIv~l~~~~~e~l~aLG~~d~iVg~~~~~-~~p~~~-----~~~p~vg~~~~~n~E~i~~l~PDlIi~~~~~~~~~~~ 75 (255)
T 3md9_A 2 AERIVTIGGDVTEIAYALGAGDEIVARDSTS-QQPQAA-----QKLPDVGYMRTLNAEGILAMKPTMLLVSELAQPSLVL 75 (255)
T ss_dssp CCCEEEESHHHHHHHHHTTCGGGEEEECTTC-CCSGGG-----GGSCBCCCTTSCCHHHHHTTCCSEEEEETTCSCHHHH
T ss_pred CceEEECCccHHHHHHHcCCCCcEEEecCCC-CCcHHH-----hcCCccCCCCCCCHHHHHccCCCEEEEcCCcCchhHH
Confidence 68999954 45677 9999999999998511 123311 24566775 3999999999954 2222 1
Q ss_pred ---CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCC-E
Q 044166 128 ---QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNG-V 203 (369)
Q Consensus 128 ---~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~-~ 203 (369)
++.||||+.+.. ..+.....++++.+|.+||+|++|+++++++++++++++++ . ++|+|++....++ .
T Consensus 76 ~~L~~~gipvv~~~~--~~~~~~~~~~i~~lg~~~g~~~~A~~l~~~~~~~~~~i~~~----~--~~~~v~~~~~~~~~~ 147 (255)
T 3md9_A 76 TQIASSGVNVVTVPG--QTTPESVAMKINAVATALHQTEKGQKLIEDYQQRLAAVNKT----P--LPVKVLFVMSHGGLT 147 (255)
T ss_dssp HHHHHTTCEEEEECC--CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTSCCS----C--CSCEEEEEECCSSSC
T ss_pred HHHHHcCCcEEEeCC--CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcc----C--CCCeEEEEEEcCCCc
Confidence 467999998852 13455678999999999999999999999999999877542 2 4789998766554 5
Q ss_pred EEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccCCCcc
Q 044166 204 WSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKSC 282 (369)
Q Consensus 204 ~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (369)
+++.| +|+.+++++++||+|++.+. .++..+|+|+|+++ |||+||+...... ......+..++|.|++
T Consensus 148 ~~~~g~~s~~~~~l~~~G~~n~~~~~-----~~~~~vs~E~l~~~--~pDvi~~~~~~~~----~~~~~~~l~~~p~~~~ 216 (255)
T 3md9_A 148 PMAAGQNTAADAMIRAAGGSNAMQGF-----SRYRPLSQEGVIAS--APDLLLITTDGVK----ALGSSENIWKLPGMAL 216 (255)
T ss_dssp CEEECBSSHHHHHHHHTTCEESCCSC-----BSEEECCHHHHHHH--CCSEEEEEHHHHH----HHSBGGGGGGSTTGGG
T ss_pred eEEECCCchHHHHHHHcCCeeecccc-----cCCccCCHHHHHHh--CCCEEEEecCCCc----chHHHHHHHhCccccc
Confidence 78887 89999999999999999742 25789999999999 9999997532100 0001223345799999
Q ss_pred ccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCCC
Q 044166 283 FAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPT 328 (369)
Q Consensus 283 l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhPe 328 (369)
++||||||||.++.. .|+..++ +....+++|+++|||+
T Consensus 217 l~AVk~~rv~~~~~~-------~~~~~gp-~~~~~~~~la~~l~P~ 254 (255)
T 3md9_A 217 TPAGKHKRLLVVDDM-------ALLGFGL-ETPQVLAQLREKMEQM 254 (255)
T ss_dssp SHHHHTTCEEEECHH-------HHHSCST-THHHHHHHHHHHHHHC
T ss_pred CcHhhcCcEEEEChh-------hhcCCCC-CHHHHHHHHHHHhccC
Confidence 999999999999642 2344444 4445688999999996
No 8
>3lhs_A Ferrichrome ABC transporter lipoprotein; siderophore, iron, receptor, binding protein, T protein; HET: SF8; 1.30A {Staphylococcus aureus subsp} PDB: 3eiw_A 3eix_A* 3li2_A*
Probab=99.97 E-value=5e-31 Score=248.05 Aligned_cols=253 Identities=12% Similarity=0.013 Sum_probs=186.4
Q ss_pred eEEEecCceEEEec-CCccc-cccCCCCcEEEecC-CC--cCcHHHHhhhcCCcccccCCC---chhhhccCceEE--ec
Q 044166 55 KSFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTS-ES--VASGCVLKLYQGGEIGLVNKS---EPLQFSQYAAHF--TT 124 (369)
Q Consensus 55 ~~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~-~~--~~~p~~~~~~~~g~i~~~G~~---n~E~i~~l~P~~--~~ 124 (369)
.+|+.|++|||+.. ..+++ .+||+ ++||++. .. ...|.+.+.+ ++++.+|.. |+|+|++++|+| .+
T Consensus 17 v~i~~~p~RIv~l~~~~~e~l~aLG~--~~Vgv~~~~~~~~~~~~~~~~~--~~~~~vg~~~~~n~E~i~~l~PDLIi~~ 92 (296)
T 3lhs_A 17 VKVPKDAKRIVVLEYSFADALAALDV--KPVGIADDGKKKRIIKPVREKI--GDYTSVGTRKQPNLEEISKLKPDLIIAD 92 (296)
T ss_dssp EEEETTCCCEEESSHHHHHHHHHTTC--CCSEECCTTCGGGSCHHHHHHH--CSCEECBCSSSBCHHHHHHTCCSEEEEE
T ss_pred EEcCCCCcEEEEEChhhHHHHHHCCC--ceEEEeCCccccccchhhHHHh--cCccccCCCCCCCHHHHHhCCCCEEEEC
Confidence 57888999999954 45677 99998 7999984 11 1236665554 357777763 999999999955 22
Q ss_pred CC-C-------CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEE
Q 044166 125 DS-D-------QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAW 196 (369)
Q Consensus 125 ~~-~-------~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~ 196 (369)
.. . ++. +|++.+... ..+.....++|+++|.+||++++|+++++++++++++++++++.. ++|+|++
T Consensus 93 ~~~~~~~~~~L~~~-~p~v~~~~~-~~~~~~~~~~i~~lg~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~v~~ 167 (296)
T 3lhs_A 93 SSRHKGINKELNKI-APTLSLKSF-DGDYKQNINSFKTIAKALNKEKEGEKRLAEHDKLINKYKDEIKFD---RNQKVLP 167 (296)
T ss_dssp TTTTTTTHHHHHHH-SCEEEECST-TCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCSC---TTSCEEE
T ss_pred CccCHHHHHHHHhh-CCEEEecCC-CCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhcc---cCCeEEE
Confidence 21 1 233 499877533 234556678999999999999999999999999999999887654 4789988
Q ss_pred EeeeCCEEEEeC-CChHHHHHHHhCCccccccCC-----CcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhh
Q 044166 197 MEFYNGVWSFTK-EAFKLKYVEDAGGENVDSSIN-----KMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQST 270 (369)
Q Consensus 197 ~~~~~~~~~~~g-~s~~~~li~~AGg~nv~~~~~-----~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~ 270 (369)
.....+.+++.| +|+.++++++||++|++.+.. +..+.++..+|+|+|+++ |||+||+..... .. ....
T Consensus 168 ~~~~~~~~~~~g~~s~~~~~l~~~G~~n~~~~~~~~~~~~~~~~~~~~vs~E~l~~~--~pDvi~~~~~~~-~~--~~~~ 242 (296)
T 3lhs_A 168 AVVAKAGLLAHPNYSYVGQFLNELGFKNALSDDVTKGLSKYLKGPYLQLDTEHLADL--NPERMIIMTDHA-KK--DSAE 242 (296)
T ss_dssp EEEETTEEEECCTTSHHHHHHHHTTCCBSSCHHHHHTTGGGEETTEEEECHHHHHHH--CCSEEEEEEGGG-CS--CSHH
T ss_pred EEecCCeEEEEeCCccHHHHHHHcCCccCCccccccccccccCCCccccCHHHHhhc--CCCEEEEEecCC-cc--chHH
Confidence 766667788887 899999999999999998421 000245789999999999 999999753210 00 1122
Q ss_pred HHhhcccCCCccccceeeCcEEEeccCCCCCcCccccc-ccCCCHHHHHHHHHHHhCCC
Q 044166 271 FLENIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFD-GAVSQPQLVLADLTEALFPT 328 (369)
Q Consensus 271 ~~~~~~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~-~~~~~p~~vL~dla~~lhPe 328 (369)
..+..++|.|++++||||||||.++.. .|+. .++.....++++|.++|||+
T Consensus 243 ~~~l~~~p~~~~l~AVk~grv~~~~~~-------~~~~~~~~~~~~~~~~~l~~~l~p~ 294 (296)
T 3lhs_A 243 FKKLQEDATWKKLNAVKNNRVDIVDRD-------VWARSRGLISSEEMAKELVELSKKE 294 (296)
T ss_dssp HHHHHHCHHHHTCHHHHTTCEEEEEHH-------HHTTTCSHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCchhhcCCeeECCeEEEECcc-------cccccCCHHHHHHHHHHHHHHhhhh
Confidence 333345799999999999999999642 2432 34556677899999999997
No 9
>3gfv_A Uncharacterized ABC transporter solute-binding protein YCLQ; alpha-beta-sandwich, periplasmic binding protein fold (PBP fold); 1.75A {Bacillus subtilis subsp}
Probab=99.97 E-value=4.3e-31 Score=249.53 Aligned_cols=253 Identities=10% Similarity=0.027 Sum_probs=184.6
Q ss_pred eEEEecCceEEEe-cCCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCCC---chhhhccCceEE--ecCCC
Q 044166 55 KSFVIPMSNYSVD-TDFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKS---EPLQFSQYAAHF--TTDSD 127 (369)
Q Consensus 55 ~~i~~Pv~RIv~~-~~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~~---n~E~i~~l~P~~--~~~~~ 127 (369)
.+|+.|++|||+. ...+++ .+||+.|+|||++.. ..|...+.+...+++.+|.. |+|+|++++|+| .++..
T Consensus 28 v~i~~~p~RIv~l~~~~~e~l~aLG~~d~iVg~~~~--~~p~~~~~~~~~~~~~vG~~~~~n~E~i~~l~PDlIi~~~~~ 105 (303)
T 3gfv_A 28 TKVPKNPKKVVVFDFGSLDTLDKLGLDDIVAGLPKQ--VLPKYLSKFKDDKYADVGSLKEPDFDKVAELDPDLIIISARQ 105 (303)
T ss_dssp EEEESSCSCEEECCHHHHHHHHHTTCGGGEEEECCS--SCCGGGGGGGSTTSEECBCSSSBCHHHHHHTCCSEEEECGGG
T ss_pred eEecCCCCEEEEeccchHHHHHHcCCCCceeEeecc--cchhhhhhhcccccccCCCCCCCCHHHHHhCCCCEEEEcCcc
Confidence 5678899999995 445677 999999999999852 12334344433567777753 999999999955 23221
Q ss_pred -------CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeee
Q 044166 128 -------QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFY 200 (369)
Q Consensus 128 -------~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~ 200 (369)
++.| |++.+......+.....++|+++|++||+|++|++++++++++++++++++++.. +|+.|++ ..
T Consensus 106 ~~~~~~L~~~~-p~v~~~~~~~~~~~~~~~~i~~lg~~~g~~~~A~~l~~~~~~~~~~i~~~~~~~~--~~~~v~~--~~ 180 (303)
T 3gfv_A 106 SESYKEFSKIA-PTIYLGVDTAKYMESFKSDAETIGKIFDKEDKVKDELANIDHSIADVKKTAEKLN--KNGLVIM--AN 180 (303)
T ss_dssp GGGHHHHHHHS-CEEECCCCGGGHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHT--CEEEEEE--EE
T ss_pred hhHHHHHHhhC-CEEEEcCCCcchHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhhccC--CcEEEEE--Ee
Confidence 3445 8887752211112345689999999999999999999999999999999988763 3555554 34
Q ss_pred CCEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCC-CCCCChhhHHhhcccC
Q 044166 201 NGVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLE-PANYTQSTFLENIDAA 278 (369)
Q Consensus 201 ~~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~-~~~~~~~~~~~~~~~~ 278 (369)
.+.+++.| +++.+.+++++|++|++.+... ..++..+|+|+|+++ |||+||+...... .... ...+..++|
T Consensus 181 ~~~~~~~g~~s~~~~~~~~~G~~n~~~~~~~--~~~~~~vs~E~l~~~--~PDvI~~~~~~~~~~~~~---~~~~l~~~p 253 (303)
T 3gfv_A 181 DGKISAFGPKSRYGLIHDVFGVAPADQNIKA--STHGQSVSYEYISKT--NPDYLFVIDRGTAIGETS---STKQVVEND 253 (303)
T ss_dssp TTEEEEECTTSTTTHHHHTTCCEESCTTCCC--CSSCEEECHHHHHHH--CCSEEEEEEHHHHHTSCC---CHHHHHTCG
T ss_pred CCceEEecCCCchhHHHHHhCCCcccccccc--cccCCcCCHHHHHHh--CCCEEEEEecCcccCcch---HHHHHhcCH
Confidence 56778877 8999999999999999985421 124578999999999 9999998532100 0011 223334579
Q ss_pred CCccccceeeCcEEEeccCCCCCcCccccc--ccCCCHHHHHHHHHHHhCCC
Q 044166 279 DKSCFAFLTNQSLWRFDKRNQNSLALDWFD--GAVSQPQLVLADLTEALFPT 328 (369)
Q Consensus 279 ~~~~l~AVkngrVy~~~~~~~p~g~~~~~~--~~~~~p~~vL~dla~~lhPe 328 (369)
.|++++||||||||.++.. .|+. .++.....++++|.++|+++
T Consensus 254 ~~~~l~AVk~grV~~~~~~-------~~~~~~~g~~s~~~~l~~l~~~l~~~ 298 (303)
T 3gfv_A 254 YVKNVNAVKNGHVIYLDSA-------TWYLSGGGLESMTQMIKEVKDGLEKE 298 (303)
T ss_dssp GGTTSHHHHTTCEEECCHH-------HHHHCCSSHHHHHHHHHHHHHHHHSC
T ss_pred HhhhcchhcCCeEEEECHH-------HHHHhCCCHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999642 3543 45667788899999999887
No 10
>2chu_A CEUE, enterochelin uptake periplasmic binding protein; iron, mecam, SELF assembly, siderophore; HET: ECA; 2.40A {Campylobacter jejuni} SCOP: c.92.2.4
Probab=99.97 E-value=5e-30 Score=241.48 Aligned_cols=248 Identities=10% Similarity=0.001 Sum_probs=173.9
Q ss_pred eEEEecCceEEEec-CCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCCC---chhhhccCceEE--ecCCC
Q 044166 55 KSFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKS---EPLQFSQYAAHF--TTDSD 127 (369)
Q Consensus 55 ~~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~~---n~E~i~~l~P~~--~~~~~ 127 (369)
.+|+.|++|||+.+ ...++ .+||+.|+|||++. ...|.+...+... +.+|.. |+|+|++++|+| .+...
T Consensus 30 v~i~~~p~RIvsl~~~~~e~l~aLG~~d~iVgv~~--~~~p~~~~~~~~~--~~vG~~~~~n~E~i~~l~PDLIi~~~~~ 105 (296)
T 2chu_A 30 NKIPKNPSKVVILDLGILDTFDALKLNDKVVGVPA--KNLPKYLQQFKNK--PSVGGVQQVDFEAINALKPDLIIISGRQ 105 (296)
T ss_dssp EEEESSCSSEEECCHHHHHHHHHTTCGGGEEEBCG--GGCCGGGGGGTTS--CBCBCSSSBCHHHHHHTCCSEEEECTTT
T ss_pred EEcCCCCCEEEEEcccHHHHHHHcCCCCceEEeeC--CcChHHHHHhccC--CCcCCCCCCCHHHHHhCCCCEEEEcCcc
Confidence 57888999999954 45677 99999999999985 1112222222221 556653 999999999955 33221
Q ss_pred -------CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeee
Q 044166 128 -------QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFY 200 (369)
Q Consensus 128 -------~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~ 200 (369)
++.| |++++......+.....++|+++|++||+|++|++++++++++++++++++++ . +++.|++ ..
T Consensus 106 ~~~~~~L~~~~-p~v~~~~~~~~~~~~~~~~i~~lg~~~g~~~~A~~l~~~~~~~~~~~~~~~~~-~--~~~~~~~--~~ 179 (296)
T 2chu_A 106 SKFYDKLKEIA-PTLFVGLDNANFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDE-D--KKALIIL--TN 179 (296)
T ss_dssp GGGHHHHHTTS-CEEECCCCTTSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCCT-T--CEEEEEE--EE
T ss_pred HHHHHHHHhhC-CEEEEecCCccchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcC-C--CcEEEEE--Ee
Confidence 3556 88876422222233467899999999999999999999999999999987765 2 3444443 44
Q ss_pred CCEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccCC
Q 044166 201 NGVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAAD 279 (369)
Q Consensus 201 ~~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~~ 279 (369)
++.+++.| +++.+.+++++|+.|++.+... ..++..+|+|+|+++ |||+||+.......+ ......+..++|.
T Consensus 180 ~~~~~~~g~~s~~~~l~~~~G~~n~~~~~~~--~~~~~~vs~E~l~~~--~PDvIi~~~~~~~~~--~~~~~~~l~~~p~ 253 (296)
T 2chu_A 180 SNKISAFGPQSRFGIIHDVLGINAVDENIKV--GTHGKSINSEFILEK--NPDYIFVVDRNVILG--NKERAQGILDNAL 253 (296)
T ss_dssp TTEEEEECTTSTTTHHHHTSCCEESCCCCC------CEEECHHHHHHH--CCSEEEEEETTTTTT--CSCCHHHHTCSTT
T ss_pred CCeeEEecCCCcHHHHHHHhCCccccccccC--CCCCCccCHHHHHhh--CCCEEEEEeCCcccC--chhHHHHHhcChh
Confidence 56778877 8899999999999999985421 123568999999999 999999854211100 0112333445799
Q ss_pred CccccceeeCcEEEeccCCCCCcCccccc---ccCCCHHHHHHHHHHHh
Q 044166 280 KSCFAFLTNQSLWRFDKRNQNSLALDWFD---GAVSQPQLVLADLTEAL 325 (369)
Q Consensus 280 ~~~l~AVkngrVy~~~~~~~p~g~~~~~~---~~~~~p~~vL~dla~~l 325 (369)
|++++||||||||.++. ..|+. .++...+.++++|+++|
T Consensus 254 ~~~l~AVk~grV~~~~~-------~~~~~~~~~gp~~~~~~l~~l~~~l 295 (296)
T 2chu_A 254 VAKTKAAQNKKIIYLDP-------EYWYLASGNGLESLKTMILEIKNAV 295 (296)
T ss_dssp GGGSHHHHTTCEEEECH-------HHHTTTTTCSHHHHHHHHHHHHHHH
T ss_pred hhhccceeCCeEEEECh-------hHhhhcCCCcHHHHHHHHHHHHHhh
Confidence 99999999999999953 12543 35666677788888876
No 11
>3r5t_A Ferric vibriobactin ABC transporter, periplasmic vibriobactin-binding protein; iron-vibriobactin transport protein; HET: VBN; 1.45A {Vibrio cholerae} PDB: 3r5s_A*
Probab=99.96 E-value=7.3e-30 Score=241.45 Aligned_cols=248 Identities=8% Similarity=-0.009 Sum_probs=177.6
Q ss_pred eeEEEecCceEEEe-cCCccc-cccCCCCcEEEecC-C--CcCcHHHHhhhcCCcccccCCC---chhhhccCceEE--e
Q 044166 54 IKSFVIPMSNYSVD-TDFFPG-KLLGLLSSMKGMTS-E--SVASGCVLKLYQGGEIGLVNKS---EPLQFSQYAAHF--T 123 (369)
Q Consensus 54 ~~~i~~Pv~RIv~~-~~~~~~-~~Lg~~d~IvGv~~-~--~~~~p~~~~~~~~g~i~~~G~~---n~E~i~~l~P~~--~ 123 (369)
..+|+.|++|||+. ...+++ .+||+ ++||++. . ....+ +.+.....+++.+|.. |+|+|++++|+| .
T Consensus 16 ~v~i~~~p~RIV~l~~~~~e~l~aLG~--~~Vg~~~~~~~~~~~~-~~~~~~~~~~~~vG~~~~~n~E~I~al~PDLIi~ 92 (305)
T 3r5t_A 16 ITTIPSQPKRILSTAVTVTGTLLAIDA--PVIASAATTQSTFFEQ-WRKLAELRQVKKLWPAGSVDLESVYVEQPDLIVV 92 (305)
T ss_dssp EEEECSCCSSEEESCHHHHHHHHHTTC--CEEEEEECTTSCCCTT-THHHHHHTTCEEEEETTCCCHHHHHHHCCSEEEE
T ss_pred EEEecCCCeEEEEECcchhHHHHHcCC--ceEEEeccccccccch-hHhhHhhcCCCccCCCCCCCHHHHHhcCCCEEEE
Confidence 35677889999994 445677 99998 8999984 1 11112 1111112356777643 999999999954 2
Q ss_pred cCC----C-------CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCC
Q 044166 124 TDS----D-------QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKP 192 (369)
Q Consensus 124 ~~~----~-------~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp 192 (369)
+.. . ++.| ||+.+. +... ...++|+++|++||+|++|++++++++++++++++++++.. .|+
T Consensus 93 ~~~~~~~~~~~~~~L~~~~-Pvv~~~-~~~~---~~~~~i~~lg~~lg~~~~A~~li~~~~~~~~~v~~~~~~~~--~~~ 165 (305)
T 3r5t_A 93 SMIGADSARDQIPLLQAIA-PTILVD-YSDQ---TWQSLAQQLGLATGLEEQAERTIHNFEQWTKQVRDVLDLPK--GRA 165 (305)
T ss_dssp ESSSTTCCGGGHHHHHTTS-CEEEEC-CTTS---CHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHTTCCCCS--SCE
T ss_pred ecccccccHHHHHHHHHhC-CEEEEc-CCCc---CHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhcccc--CCE
Confidence 221 1 4667 998875 3222 24689999999999999999999999999999998877642 344
Q ss_pred EEEEEeeeCC-EEEEeC-CChHHHHHHHhCCccccc--cCCCc--ccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCC
Q 044166 193 IVAWMEFYNG-VWSFTK-EAFKLKYVEDAGGENVDS--SINKM--TYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANY 266 (369)
Q Consensus 193 ~V~~~~~~~~-~~~~~g-~s~~~~li~~AGg~nv~~--~~~~~--~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~ 266 (369)
+|+.. ..++ .+++.| +|+.+++++++|++|+.. .+.+. ...++..+|+|+|+++ |||+||+..+
T Consensus 166 ~v~~~-~~~~~~~~~~g~~s~~~~ll~~~G~~n~~~~~~~~~~~~~~~~~~~vs~E~l~~~--~PDvI~~~~~------- 235 (305)
T 3r5t_A 166 NIVSY-HGPGVVNAVAKAQSAHAQLLQSVGVVLEEPDPAWQAGSIVHRDFLRIHYEHLTQL--QAETTFLITM------- 235 (305)
T ss_dssp EEEEC-CCTTSCEEEECTTSHHHHHHHHTTCCBCCCCGGGBCSSCCCSSEEEECGGGGGGC--CCSEEEEETC-------
T ss_pred EEEEE-ecCCceEEEecCCChHHHHHHHcCCCCCCchhhhhcccccCCceeeeCHHHhccc--CCCEEEEEec-------
Confidence 45432 2234 688887 899999999999999531 11011 1245679999999998 9999998532
Q ss_pred ChhhHHhhcccCCCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCCCC
Q 044166 267 TQSTFLENIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPTG 329 (369)
Q Consensus 267 ~~~~~~~~~~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhPe~ 329 (369)
......+..++|.|++++||||||||.++.. .|+ .++..++.+|++|.++||||.
T Consensus 236 ~~~~~~~l~~~p~~~~l~AVk~grV~~~~~~-------~~~-~g~~s~~~~l~~l~~~l~~~~ 290 (305)
T 3r5t_A 236 TDQQAQAFLHDPILKNLPSIQRKQVYGLGEN-------SFR-IDLFSAREIINSLLRRFAGEQ 290 (305)
T ss_dssp CHHHHHHHHTCGGGTTCHHHHTTCEEEEETT-------CSS-CCHHHHHHHHHHHHHHHCCTT
T ss_pred CcHHHHHHhcCcccccCChhhcCcEEEeCcc-------ccc-CCHHHHHHHHHHHHHHhccch
Confidence 1122333445799999999999999999643 244 377788899999999999994
No 12
>3be6_A Putative iron compound-binding protein of ABC TRA family; open form, closed form, group III periplasmic binding protei structural genomics; HET: MSE; 1.82A {Escherichia coli O157} PDB: 3be5_A*
Probab=99.96 E-value=1.1e-29 Score=238.93 Aligned_cols=250 Identities=10% Similarity=0.004 Sum_probs=179.8
Q ss_pred eEEEecCceEEEec--CCccc-cccCCCCcEEEecC--C-----CcCc-HHHHh-hhcCCcccccCCC--chhhhccCce
Q 044166 55 KSFVIPMSNYSVDT--DFFPG-KLLGLLSSMKGMTS--E-----SVAS-GCVLK-LYQGGEIGLVNKS--EPLQFSQYAA 120 (369)
Q Consensus 55 ~~i~~Pv~RIv~~~--~~~~~-~~Lg~~d~IvGv~~--~-----~~~~-p~~~~-~~~~g~i~~~G~~--n~E~i~~l~P 120 (369)
.+|+.|++|||+.+ ...++ .+||+ ++||++. . |... |.+.. .+...+++.+|.. |+|+|++|+|
T Consensus 14 v~i~~~p~RIv~l~~~~~~e~l~aLG~--~~Vg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vG~~~~n~E~i~~l~P 91 (297)
T 3be6_A 14 VTVPAHPKRIVSLHDLDITIPLIELGV--PPVASHGRTRPDGSHFIRSGALLTGVDFDNSSIAFIGTADIDIEAIVAAKP 91 (297)
T ss_dssp EEEESSCSSEEESCTTTTHHHHHHTTC--CCSEECCEECTTSCEECTTHHHHHSCCGGGSSCEECCSSSCCHHHHHHTCC
T ss_pred EecCCCCcEEEEecccchhHHHHHCCC--ceEEecccccCCcccccccccccccccccccCCcccCCCCCCHHHHhcCCC
Confidence 56888999999953 34566 88997 8999983 2 1111 22110 1112456777753 9999999999
Q ss_pred EE-e-cCCC-------CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 044166 121 HF-T-TDSD-------QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFK 191 (369)
Q Consensus 121 ~~-~-~~~~-------~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~k 191 (369)
+| + +... ++.| |++.+..+. ....++++++|++||+|++|++++++++++++++++++++ ++
T Consensus 92 DLIi~~~~~~~~~~~L~~~~-pvv~~~~~~----~~~~~~~~~lg~~~g~~~~A~~~~~~~~~~~~~i~~~~~~----~~ 162 (297)
T 3be6_A 92 DLIITEPTRNTPIERLEKIA-PTVSIDHLK----GGAPEIYRKLAELTGTQSQLAILERRYQAQINALKATLDS----QK 162 (297)
T ss_dssp SEEEECTTCCSCHHHHHHHS-CEEECCTTT----THHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSCG----GG
T ss_pred CEEEEcCCCHHHHHHHHhhC-CEEEeCCCC----CCHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc----cC
Confidence 55 2 2221 3456 998875332 2467899999999999999999999999999999988754 36
Q ss_pred CEEEEEeeeCCEEEEeC-CChHHHHHHHhCCcccc--ccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCCh
Q 044166 192 PIVAWMEFYNGVWSFTK-EAFKLKYVEDAGGENVD--SSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQ 268 (369)
Q Consensus 192 p~V~~~~~~~~~~~~~g-~s~~~~li~~AGg~nv~--~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~ 268 (369)
|+|++....++.+++.| +++.++++++||++|+. .+. ...++..+|+|+|+++ |||+||+..... . ..+.
T Consensus 163 ~~v~~~~~~~~~~~~~g~~~~~~~~i~~~G~~n~~~~~~~---~~~~~~~vs~E~l~~~--~PDvIi~~~~~~-~-~~~~ 235 (297)
T 3be6_A 163 ITVSVIQANQGKINVMHSYHSLGRVLRDAGFRFPPLIESI---PEGGRMDVSAERLPEL--DADFVFATWRGD-T-GGKP 235 (297)
T ss_dssp CBEEEEEEETTEEEEESSCHHHHHHHHHTTCBCCHHHHTS---CTTCEEEECGGGGGGG--CCSEEEEEECCT-T-SCCT
T ss_pred cEEEEEEEcCCeEEEEeCCCcHHHHHHHcCCCCCcccccc---cCCCccccCHHHHhhc--CCCEEEEeccCc-c-ccCh
Confidence 88987765666777777 89999999999999974 322 1235689999999999 999999753211 1 1122
Q ss_pred hhHHhhc--ccCCCc-cccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCCCC
Q 044166 269 STFLENI--DAADKS-CFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPTG 329 (369)
Q Consensus 269 ~~~~~~~--~~~~~~-~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhPe~ 329 (369)
+...+.+ .+|.|+ .++||||||||.++.. .||..++.....++++|+++|||+.
T Consensus 236 ~~~~~~l~~~~p~w~~~l~AVk~~rV~~~~~~-------~~~~~~~~~~~~~~~~l~~~l~~~~ 292 (297)
T 3be6_A 236 QDELATMEKVMPGWCQFLTACRSGRYVLISRE-------EAISNSFASLGLMAAQIQSQIAGRP 292 (297)
T ss_dssp HHHHHHHHHHCTTGGGGCHHHHTTCEEEEEHH-------HHHCCSHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHhhcChhhhhcCcceeCCcEEEEcce-------eeecCCHHHHHHHHHHHHHHHhcCC
Confidence 2223322 369999 8999999999999642 2555555566778999999999984
No 13
>1efd_N Ferrichrome-binding periplasmic protein; periplasmic binding protein-siderophore complex, FHUD complex with gallichrome; HET: GCR; 1.90A {Escherichia coli} SCOP: c.92.2.1 PDB: 1k7s_N* 1k2v_N* 1esz_A*
Probab=99.96 E-value=5.2e-30 Score=237.59 Aligned_cols=244 Identities=12% Similarity=0.042 Sum_probs=177.0
Q ss_pred ecCceEEEec-CCccc-cccCCCCcEEEecCCCcCcHHHHhhh-cCCcccccCCC---chhhhccCceEE--ecCCC---
Q 044166 59 IPMSNYSVDT-DFFPG-KLLGLLSSMKGMTSESVASGCVLKLY-QGGEIGLVNKS---EPLQFSQYAAHF--TTDSD--- 127 (369)
Q Consensus 59 ~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~-~~g~i~~~G~~---n~E~i~~l~P~~--~~~~~--- 127 (369)
.|++|||+.+ ..+++ .+||+ ++||++... ..|...... ..++++.+|.. |+|+|++++|+| .++..
T Consensus 3 ~~p~RIv~l~~~~~e~l~aLG~--~~Vgv~~~~-~~~~~~~~~~~~~~~~~vg~~~~~n~E~i~~l~PDLIi~~~~~~~~ 79 (266)
T 1efd_N 3 IDPNRIVALEWLPVELLLALGI--VPYGVADTI-NYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPS 79 (266)
T ss_dssp CCTTSEEESSHHHHHHHHHTTC--CCSEESCHH-HHHHHTCSSCCCTTCEECBCSSSBCHHHHHHHCCSEEEEETTSSSC
T ss_pred CCCCeEEEechhhHHHHHHcCC--ceeEeeccc-ccchhccCcCCCcccccCCCCCCCCHHHHHhcCCCEEEeccccHHH
Confidence 4789999953 45677 89998 699998411 112221111 12357778753 999999999955 33321
Q ss_pred ----CCCCceEEEcCCCCC-Cchh-hHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeC
Q 044166 128 ----QPQACNFANFAPFGE-DGPL-RRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYN 201 (369)
Q Consensus 128 ----~~~gIpvv~~~~~~e-~~pl-~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~ 201 (369)
++.| ||+.+. +.+ .+++ ...++++.+|++||++++|++++++++++++++++++++.. +||.|++....+
T Consensus 80 ~~~L~~i~-pvv~~~-~~~~~~~~~~~~~~i~~lg~~~g~~~~A~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~ 155 (266)
T 1efd_N 80 PEMLARIA-PGRGFN-FSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRG--ARPLLLTTLIDP 155 (266)
T ss_dssp HHHHHHHS-CEEEEC-SCSSSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHGGGGSSSC--SCCEEEEEEEET
T ss_pred HHHHHhhC-CEEEec-CCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhccC--CCcEEEEEecCC
Confidence 3567 998875 322 2334 34689999999999999999999999999999999887764 467777653445
Q ss_pred CEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccCCC
Q 044166 202 GVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADK 280 (369)
Q Consensus 202 ~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (369)
+.+++.| +++.+++++++|++|++.+.. ...|+..+|+|+|+++ .|||+||+..+ ......+..++|.|
T Consensus 156 ~~~~~~g~~s~~~~~~~~~G~~n~~~~~~--~~~g~~~vs~E~l~~~-~~pDvIi~~~~-------~~~~~~~l~~~p~~ 225 (266)
T 1efd_N 156 RHMLVFGPNSLFQEILDEYGIPNAWQGET--NFWGSTAVSIDRLAAY-KDVDVLCFDHD-------NSKDMDALMATPLW 225 (266)
T ss_dssp TEEEEECTTSTTHHHHHHTTCCBSCCSCC--CTTSEEEECGGGGGGC-CSCEEEEECSS-------CHHHHHHHHTSHHH
T ss_pred CeEEEecCCchHHHHHHHhCCCCcCcCCC--CcccceecCHHHHhcC-CCCeEEEEeCC-------ChHHHHHHhcChhh
Confidence 6777877 899999999999999998432 1124578999999984 49999998531 11223334457999
Q ss_pred ccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCC
Q 044166 281 SCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFP 327 (369)
Q Consensus 281 ~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhP 327 (369)
++++||||||||.++. .||..++.+...++++|+++||-
T Consensus 226 ~~l~AVk~~rV~~~~~--------~~~~~~~~~~~~~l~~l~~~l~~ 264 (266)
T 1efd_N 226 QAMPFVRAGRFQRVPA--------VWFYGATLSAMHFVRVLDNAIGG 264 (266)
T ss_dssp HHCHHHHTTCEEEECC--------CCTTCCHHHHHHHHHHHHHHHC-
T ss_pred hcCccccCCceEEcCc--------ccccCCHHHHHHHHHHHHHHHhh
Confidence 9999999999999953 46666666777889999999984
No 14
>2x4l_A Ferric-siderophore receptor protein; transport; 1.50A {Streptomyces coelicolor}
Probab=99.96 E-value=8e-30 Score=243.28 Aligned_cols=250 Identities=12% Similarity=0.001 Sum_probs=180.8
Q ss_pred eEEEecCceEEEecCCccc-cccCCCCcEEEecC--CCcC--cHHHHhhhcCCcccccCC-C---chhhhccCceEE--e
Q 044166 55 KSFVIPMSNYSVDTDFFPG-KLLGLLSSMKGMTS--ESVA--SGCVLKLYQGGEIGLVNK-S---EPLQFSQYAAHF--T 123 (369)
Q Consensus 55 ~~i~~Pv~RIv~~~~~~~~-~~Lg~~d~IvGv~~--~~~~--~p~~~~~~~~g~i~~~G~-~---n~E~i~~l~P~~--~ 123 (369)
.+|+.|++|||++...+++ .+||+ +|||++. .+.. .+.+.......+++.+|. . |+|+|++|+|+| .
T Consensus 39 Vti~~~p~RIVsl~~~~e~l~aLG~--~~VGv~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~n~E~I~~l~PDLIi~ 116 (325)
T 2x4l_A 39 VKLDKVPANIVAFTGVAAALFDYGV--EVKGVFGPTTTKDGKPDVQAGDLDVDKVTVLGNEWGKLNVEKYASLAPEVLIT 116 (325)
T ss_dssp EEESSCCSSEEEEHHHHHHHHHTTC--CCSEEESSCBCTTSCBCGGGTTCCTTTSEEEESSTTCCCHHHHHHTCCSEEEE
T ss_pred EeCCCCCcEEEEecchHHHHHHcCC--cEEEEecCCCCccccChhhhcccccccCceeCCCCCCCCHHHHhccCCCEEEE
Confidence 4677789999995444567 89998 6999984 2111 122222222345777775 2 999999999944 2
Q ss_pred cCC---------C-------CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcH---HHHHHHHHHHHHHHHHHHHHHh
Q 044166 124 TDS---------D-------QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAE---ARANQVYNAVKENYLCLTRVAA 184 (369)
Q Consensus 124 ~~~---------~-------~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke---~~A~~~~~~~~~~~~~i~~~~~ 184 (369)
+.. . ++. |||+.+... ..+.....++|+.||++||+| ++|+++++++++++++++++++
T Consensus 117 ~~~~~~~~~~~~~~~~~~~L~~~-ipvv~~~~~-~~~~~~~~~~i~~lg~~~g~e~~~~~A~~~~~~~~~~~~~i~~~~~ 194 (325)
T 2x4l_A 117 TTFDTAGTLWSVPEESKDKVAKL-APSVAISVF-DRQLTQPLQRMWELAESLGADMKAKKVTDAKAAFDKAAARLRAAAK 194 (325)
T ss_dssp EECSTTCCCTTSCGGGHHHHHHH-SCEEEEECS-SSCTHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHhh-CCEEEEccC-ccchHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHhc
Confidence 211 1 245 899887422 122334678999999999999 9999999999999999999888
Q ss_pred CCCCCCCCEEEEEeeeCCEEEEeC-CChHHHH-HHHhCCccccccCCC--cccCccccCCHHHHHHhcCCCcEEEecCCC
Q 044166 185 GKTKPFKPIVAWMEFYNGVWSFTK-EAFKLKY-VEDAGGENVDSSINK--MTYNISNSDDLEQLHAILCTVDVVIDGTYT 260 (369)
Q Consensus 185 ~~~~~~kp~V~~~~~~~~~~~~~g-~s~~~~l-i~~AGg~nv~~~~~~--~~~~g~~~vs~E~v~~~~~npDvii~~~~~ 260 (369)
+. .+|+|++.....+.+++.| +++.+.+ ++++|++|++.+... ....++..+|+|+|+++ |||+||+....
T Consensus 195 ~~---~~~~v~~~~~~~~~~~~~g~~s~~~~~~l~~aG~~n~~~~~~~~~~~~~~~~~vs~E~l~~~--~PDvIi~~~~~ 269 (325)
T 2x4l_A 195 AK---PEIRVLAGSASPDLFYVSGTNLSVDLEYFKALGVNFVEPSEDAKKATGGWFESLSWENVDKY--PADVIIMDDRA 269 (325)
T ss_dssp HC---TTCEEEEEEECSSEEEEECSTTCHHHHHHHHTTCEECCCCTTTTGGGTTSEEEEEGGGTTSS--CCSEEEEECST
T ss_pred cC---CCceEEEEEecCCcEEEEcCCCchhHHHHHHcCCcccCccccccccCCCCccccCHHHHhhc--CCCEEEEecCC
Confidence 75 3689998776556778777 7889888 999999999975320 01235678999999998 99999985321
Q ss_pred CCCCCCChhhHHhhcccCCCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCCCC
Q 044166 261 LEPANYTQSTFLENIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPTG 329 (369)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhPe~ 329 (369)
... ...+.. +|.|++++||||||||.++.. .||..+ +....|++|+++|||+.
T Consensus 270 ---~~~---~~~~l~-~p~w~~l~AVk~~rV~~~~~~-------~~~~~~--~~~~~l~~la~~l~p~~ 322 (325)
T 2x4l_A 270 ---STI---QPADIT-EGTWKQLPAVKAGQVIARSPE-------PILSYD--KCTPLLDNLAEAIENAK 322 (325)
T ss_dssp ---TSB---CGGGCC-CHHHHTCHHHHTTCEEEECSS-------CCSSHH--HHHHHHHHHHHHHHHCC
T ss_pred ---Ccc---cHHHhh-ChHhhhChHhhcCCEEEeCcc-------cccCcH--HHHHHHHHHHHHHHhhc
Confidence 111 122345 789999999999999999642 244333 56678999999999984
No 15
>3tny_A YFIY (ABC transport system substrate-binding PROT; schizokinen, nutrient binding protein, ABC transporter, metal transport; HET: SKZ; 1.55A {Bacillus cereus}
Probab=99.96 E-value=4.9e-30 Score=242.24 Aligned_cols=248 Identities=13% Similarity=0.096 Sum_probs=171.9
Q ss_pred eEEEecCceEEEec-CCccc-cccCCCCcEEEecCCCc---CcHHHHhhhcCCcccccCCC---chhhhccCceEEe--c
Q 044166 55 KSFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTSESV---ASGCVLKLYQGGEIGLVNKS---EPLQFSQYAAHFT--T 124 (369)
Q Consensus 55 ~~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~---~~p~~~~~~~~g~i~~~G~~---n~E~i~~l~P~~~--~ 124 (369)
.+|+.|++|||+.. ..+++ .+||+ ++||+..... ..+.+...+ ..++.+|.. |+|+|++|+|+|+ +
T Consensus 28 vtip~~P~RIV~l~~~~~e~l~aLG~--~~Vg~~~~~~~~~~~~~~~~~~--~~~~~vg~~~~~n~E~I~~l~PDLIi~~ 103 (303)
T 3tny_A 28 TEVPANPKRVVILTNEGTEALLELGV--KPVGAVKSWTGDPWYPHIKDKM--KDVKVVGDEGQVNVETIASLKPDLIIGN 103 (303)
T ss_dssp EEEESSCSSEEECSHHHHHHHHHTTC--CCSEEEECTTSSSSCTTTTGGG--TTCEEEEETTEECHHHHHHTCCSEEEEE
T ss_pred EEeCCCCCEEEEEChhHHHHHHHCCC--ceEEEEccccCCccchhHHHHh--cCCCccCCCCCCCHHHHHcCCCCEEEEe
Confidence 46788999999954 45677 89997 5788763111 112333332 346667654 9999999999552 2
Q ss_pred CC--C----C-CCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEE
Q 044166 125 DS--D----Q-PQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWM 197 (369)
Q Consensus 125 ~~--~----~-~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~ 197 (369)
.. . + +...|+++...+.+ ...++|+++|.+||+|++|++++++++++++.+++++++.. +++|++.
T Consensus 104 ~~~~~~~~~~l~~i~p~v~~~~~~~----~~~~~i~~lg~~~g~e~~A~~li~~~~~~~~~~~~~~~~~~---~~~~~~~ 176 (303)
T 3tny_A 104 KMRHEKVYEQLKAIAPTVFSETLRG----EWKDNFKFYAKALNKEKEGQKVVADYESRMKDLKGKLGDKV---NQEISMV 176 (303)
T ss_dssp HHHHGGGHHHHHTTSCEEEECCCTT----CHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHGGGG---GSBEEEE
T ss_pred ccchHHHHHHhhcCCcEEEeccCcc----cHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhccc---CCcEEEE
Confidence 21 1 1 22336665543433 24689999999999999999999999999999999988764 4556555
Q ss_pred eeeCCEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHh-hc
Q 044166 198 EFYNGVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLE-NI 275 (369)
Q Consensus 198 ~~~~~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~-~~ 275 (369)
....+.+++.| +++.+.+++++|++|++.... ...++..+|+|+|+++ |||+||+..+.... ......+.+ ..
T Consensus 177 ~~~~~~~~~~g~~s~~~~~~~~~G~~n~~~~~~--~~~~~~~vs~E~l~~~--nPDvI~~~~~~~~~-~~~~~~~~~~l~ 251 (303)
T 3tny_A 177 RFMPGDVRIYHGDTFSGVILKELGFKRPGDQNK--DDFAERNVSKERISAM--DGDVLFYFTFDKGN-EKKGSELEKEYI 251 (303)
T ss_dssp EEETTEEEEECSSSHHHHHHHHHTCBCCGGGGS--SSSEECSCCGGGGGGG--CSSEEEEEECCCST-TCHHHHHHHHHH
T ss_pred EEecCcceeecCCccHHHHHHHhcCccchhhcc--cccccccCChhHHhhh--CCCEEEEEecCCCc-chhHHHHHHHHH
Confidence 55667777776 999999999999999987432 2234678999999999 99999875432111 111223333 34
Q ss_pred ccCCCccccceeeCcEEEeccCCCCCcCcccccc-cCCCHHHHHHHHHHHh
Q 044166 276 DAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDG-AVSQPQLVLADLTEAL 325 (369)
Q Consensus 276 ~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~-~~~~p~~vL~dla~~l 325 (369)
++|.|++++||||||||.++.. .|+.. ++.....+|.+|.+.|
T Consensus 252 ~~p~w~~l~AVkngrVy~l~~~-------~~~~~~g~~a~~~~ld~l~~~l 295 (303)
T 3tny_A 252 NDPLFKNLNAVKNGKAYKVDDV-------IWNTAGGVIAANLLLDDIEKRF 295 (303)
T ss_dssp TSHHHHTSHHHHTTCEEECCHH-------HHTTSCSHHHHHHHHHHHHHHH
T ss_pred cChhhhcCChhcCCcEEEECHH-------HhhhcCCHHHHHHHHHHHHHHh
Confidence 5799999999999999999642 24333 3444556677777765
No 16
>3g9q_A Ferrichrome-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.60A {Bacillus subtilis subsp} PDB: 3hxp_A
Probab=99.96 E-value=3.9e-30 Score=240.08 Aligned_cols=247 Identities=9% Similarity=-0.023 Sum_probs=174.1
Q ss_pred eEEEecCceEEEe-cCCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCCC-chhhhccCceEE--ecCCC--
Q 044166 55 KSFVIPMSNYSVD-TDFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKS-EPLQFSQYAAHF--TTDSD-- 127 (369)
Q Consensus 55 ~~i~~Pv~RIv~~-~~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~~-n~E~i~~l~P~~--~~~~~-- 127 (369)
.+|+.|++|||+. .+.+++ .+||+ ++||++......|.+.+.+ .+++.+|.. |+|+|++++|+| .+...
T Consensus 8 v~i~~~p~RIv~l~~~~~e~l~aLG~--~~Vgv~~~~~~~~~~~~~~--~~i~~vG~~~n~E~i~~l~PDlIi~~~~~~~ 83 (279)
T 3g9q_A 8 VKIPKHPKRVVVMADGYYGYFKTLGI--NVVGAPENVFKNPYYKGKT--NGVENIGDGTSVEKVIDLNPDLIIVWTTQGA 83 (279)
T ss_dssp --CCSSCSCEEECCGGGHHHHHHHTC--CEEECCGGGGTCTTTTTTC--CTTCBCCCSCCHHHHHTTCCSEEEEECC--C
T ss_pred EEecCCCCEEEEeCcccHHHHHHCCC--cEEEeecccccchhhHHHh--cCCCccCCCCCHHHHhcCCCCEEEEcCCCHH
Confidence 5678899999995 455677 99998 8999984111224443332 457778743 999999999954 23221
Q ss_pred -----CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCC
Q 044166 128 -----QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNG 202 (369)
Q Consensus 128 -----~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~ 202 (369)
++. +||+.+... .. ...++|+++|++||+|++|++++++++++++++++++++....++++|++. .++
T Consensus 84 ~~~~L~~~-~pvv~~~~~-~~---~~~~~i~~lg~~~g~e~~A~~li~~~~~~~~~i~~~~~~~~~~~~~~v~~~--~~~ 156 (279)
T 3g9q_A 84 DIKKLEKI-APTVAVKYD-KL---DNIEQLKEFAKMTGTEDKAEKWLAKWDKKVAAAKTKIKKAVGDKTISIMQT--NGK 156 (279)
T ss_dssp CHHHHHHH-SCEEEECTT-CS---CSSHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBEEEEEE--ETT
T ss_pred HHHHHHhh-CCEEEEcCC-CC---CHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhhcCCceEEEEEE--cCC
Confidence 244 699887522 12 245899999999999999999999999999999998876532235566654 456
Q ss_pred EEEEeC-CC-hHH-HHHHHhCCccc---cccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcc
Q 044166 203 VWSFTK-EA-FKL-KYVEDAGGENV---DSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENID 276 (369)
Q Consensus 203 ~~~~~g-~s-~~~-~li~~AGg~nv---~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~ 276 (369)
.+++.| ++ +.+ .+++++|..+. +.+.. ..++++..+|+|+|+++ |||+||+...... . ...+..+
T Consensus 157 ~~~~~g~~~~~~~~~i~~~~G~~~~~~~~~~~~-~~~~~~~~vs~E~l~~~--~pDvI~~~~~~~~---~---~~~~l~~ 227 (279)
T 3g9q_A 157 DIYVFGKDFGRGGSIIYKDLGLQATKLTKEKAI-DQGPGYTSISLEKLPDF--AGDYIFAGPWQSG---G---DDGGVFE 227 (279)
T ss_dssp EEEEECSSSSTTHHHHHTTSCCBCCHHHHHHHT-TTSSSEEEECTTSHHHH--CCSEEEEEESCCC---C-------TTT
T ss_pred eEEEEecCCCccHHHHHHHcCCCCChhhhhhhh-ccCCCceeeCHHHHHhh--CCCEEEEEeCCch---h---hHHHHhc
Confidence 788887 42 454 46677787754 33210 01236789999999999 9999998542110 1 1223334
Q ss_pred cCCCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCCC
Q 044166 277 AADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPT 328 (369)
Q Consensus 277 ~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhPe 328 (369)
+|.|++++||||||||.++.. .||..++..++.+|++|..+|||-
T Consensus 228 ~p~~~~l~AVk~~rV~~~~~~-------~~~~~~p~s~~~~l~~l~~~l~~~ 272 (279)
T 3g9q_A 228 SSIWKNLNAVKNGHVYKMDPI-------GFYFTDPISLEGQLEFITESLTKL 272 (279)
T ss_dssp SHHHHTSHHHHTTCEEECCTT-------GGGCCSHHHHHHHHHHHHHHHHSC
T ss_pred ChhhhcChhhhCCCEEEEchh-------hEEECCHHHHHHHHHHHHHHHHHh
Confidence 799999999999999999642 467778888999999999999996
No 17
>3tlk_A Ferrienterobactin-binding periplasmic protein; ferric-enterobactin, trimer, siderophore transport, periplas space, metal transport; HET: EB4; 1.85A {Escherichia coli}
Probab=99.96 E-value=3.6e-28 Score=231.95 Aligned_cols=249 Identities=7% Similarity=-0.046 Sum_probs=176.1
Q ss_pred eEEEecCceEEEe-cCCccc-cccCCCCcEEEecCC--C--c-----CcHHHHhhhcCCcccccC--CCchhhhccCceE
Q 044166 55 KSFVIPMSNYSVD-TDFFPG-KLLGLLSSMKGMTSE--S--V-----ASGCVLKLYQGGEIGLVN--KSEPLQFSQYAAH 121 (369)
Q Consensus 55 ~~i~~Pv~RIv~~-~~~~~~-~~Lg~~d~IvGv~~~--~--~-----~~p~~~~~~~~g~i~~~G--~~n~E~i~~l~P~ 121 (369)
.+|+.|++|||+. .+.+++ .+||+ ++||++.. . + +.+.+.+.....+++.+| ..|+|+|++++|+
T Consensus 40 vti~~~p~RIV~l~~~~~e~l~aLG~--~~vgv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vg~~~~n~E~I~~l~PD 117 (326)
T 3tlk_A 40 HTLESQPQRIVSTSVTLTGSLLAIDA--PVIASGATTPNNRVADDQGFLRQWSKVAKERKLQRLYIGEPSAEAVAAQMPD 117 (326)
T ss_dssp EEECSCCSSEEESCHHHHHHHHHTTC--CEEEEEECCTTSTTBCTTSCBGGGHHHHHHTTCEEEEESSCCHHHHHTTCCS
T ss_pred EEeCCCCcEEEEECcchHHHHHhCCC--CeeEEeeccccccccCccchhhhhhhhhhccCCCccCCCCCCHHHHhhCCCC
Confidence 5778899999995 445677 99998 69988631 0 0 111111111112345544 4499999999995
Q ss_pred E--ecCC------C-----CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 044166 122 F--TTDS------D-----QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTK 188 (369)
Q Consensus 122 ~--~~~~------~-----~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~ 188 (369)
| .+.. + ++.| ||+.+... .. ...++++.+|++||+|++|+++++++++++++++++++...
T Consensus 118 LIi~~~~~~~~~~~~~~~L~~~g-pvv~~~~~-~~---~~~~~i~~lg~~lg~~~~A~~li~~~~~~~~~i~~~~~~~~- 191 (326)
T 3tlk_A 118 LILISATGGDSALALYDQLSTIA-PTLIINYD-DK---SWQSLLTQLGEITGHEKQAAERIAQFDKQLAAAKEQIKLPP- 191 (326)
T ss_dssp EEEEESSSTTCCGGGHHHHHTTS-CEEEECCS-SS---CHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHBCCCS-
T ss_pred EEEEeCCCccchHHHHHHHHhhC-CEEEEcCC-cc---cHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhcccC-
Confidence 4 2221 1 4678 99887522 22 24678999999999999999999999999999999987653
Q ss_pred CCCCEEEEEeeeCCEEEEeC-CChHHHHHHHhCCcccc--ccCCC----cccCccccCCHHHHH-HhcCCCcEEEecCCC
Q 044166 189 PFKPIVAWMEFYNGVWSFTK-EAFKLKYVEDAGGENVD--SSINK----MTYNISNSDDLEQLH-AILCTVDVVIDGTYT 260 (369)
Q Consensus 189 ~~kp~V~~~~~~~~~~~~~g-~s~~~~li~~AGg~nv~--~~~~~----~~~~g~~~vs~E~v~-~~~~npDvii~~~~~ 260 (369)
++++|++....++.+++.| +|+.+++++++|++|++ .+..+ ....++..+|+|+|+ ++ |||+||+..+
T Consensus 192 -~~~~v~~~~~~~~~~~~~g~~s~~~~ll~~~G~~n~~~~~~~~~~~~~~~~~~~~~vs~E~l~~~~--~pDvI~~~~~- 267 (326)
T 3tlk_A 192 -QPVTAIVYTAAAHSANLWTPESAQGQMLEQLGFTLAKLPAGLNASQSQGKRHDIIQLGGENLAAGL--NGESLFLFAG- 267 (326)
T ss_dssp -SSEEEEEEEGGGTEEEEECTTSHHHHHHHHTTCCBCCCCTTCCCCCCTTCCSSEEEECTTHHHHHC--CSSEEEEETB-
T ss_pred -CCeEEEEEEecCCceEEEcCCCcHHHHHHHcCCCcCCcchhhhccccccCCCCceecCHHHhhhhc--CCCEEEEECC-
Confidence 4678875544456688887 99999999999999986 22211 012346789999999 87 9999987431
Q ss_pred CCCCCCChhhHHhhcccCCCccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHhCCCC
Q 044166 261 LEPANYTQSTFLENIDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEALFPTG 329 (369)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~lhPe~ 329 (369)
......+..++|.|++++||||||||.++... | ..++.....+|.++..+|||..
T Consensus 268 ------~~~~~~~l~~~p~w~~l~AVk~grV~~~~~~~-------~-~~~~~sa~~~L~~~~~~~~~~~ 322 (326)
T 3tlk_A 268 ------DQKDADAIYANPLLAHLPAVQNKQVYALGTET-------F-RLDYYSAMQVLDRLKALFLEHH 322 (326)
T ss_dssp ------CHHHHHHHHHCGGGTTCHHHHTTCEEEEEGGG-------S-SCSHHHHHHHHHHHHHHHBTTC
T ss_pred ------ChhHHHHHhhChhhhhChHHhCCcEEEeCccc-------e-ecCHHHHHHHHHHHHHHHHhhc
Confidence 11223333457999999999999999996532 2 2244456778999999999973
No 18
>3tef_A VCTP, iron(III) ABC transporter, periplasmic iron-compo binding protein; siderophore-binding protein, transport protein; 1.70A {Vibrio cholerae}
Probab=99.95 E-value=6e-29 Score=232.60 Aligned_cols=252 Identities=8% Similarity=-0.005 Sum_probs=171.1
Q ss_pred eEEEecCceEEEec-CCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCCC---chhhhccCceEE-e-cCCC
Q 044166 55 KSFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKS---EPLQFSQYAAHF-T-TDSD 127 (369)
Q Consensus 55 ~~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~~---n~E~i~~l~P~~-~-~~~~ 127 (369)
.+|+.+++|||+.+ +.+++ .+||+. +||++.... .|.........+++.+|.. |+|+|++|+|+| + +...
T Consensus 13 vti~~~P~RIV~l~~~~~e~l~aLG~~--~vgv~~~~~-~~~~~~~~~~~~~~~vg~~~~~n~E~I~al~PDLIi~~~~~ 89 (292)
T 3tef_A 13 TTLEQKPQRVVVIGVGALDAIDSFGIE--PVAVSKFDG-TPDYLAKYKSDKYPSAGSLFEPDFETIYTQKPDLIVIGPRA 89 (292)
T ss_dssp EEEESSCSSEEEESHHHHHHHHHTTCC--CSEECCCTT-CCGGGGGGGSTTSCBCBCSSSBCHHHHHHTCCSEEEECGGG
T ss_pred EEeCCCCCEEEEECchHHHHHHHCCCc--eEEEEcCCC-CchhhhhhHhccCceeCCCCCCCHHHHhcCCCCEEEeccch
Confidence 57889999999854 45677 899985 578874111 1222222234467777764 999999999955 3 2211
Q ss_pred -------CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeee
Q 044166 128 -------QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFY 200 (369)
Q Consensus 128 -------~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~ 200 (369)
.+.+.++++.......+.....++++.+|+++|++++|+++++++++++++++++++..+ ++++++ ...
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~~~A~~~~~~~~~~i~~~~~~~~~~~---~~~~~~-~~~ 165 (292)
T 3tef_A 90 SKSYDELSKIAPTIVFAAEADQGYWESTQQQWRNLGKVFAIEPAVEAKIEQVDAQFKSIMQYNQQHK---SDAMLV-MSS 165 (292)
T ss_dssp GGGHHHHHHHSCEEECCCCTTTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHTT---CEEEEE-EEE
T ss_pred hhHHHHHHHhcCceeeeeccccCCHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccccC---CcEEEE-EEe
Confidence 233444443333333444556789999999999999999999999999999999887642 333333 445
Q ss_pred CCEEEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccCC
Q 044166 201 NGVWSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAAD 279 (369)
Q Consensus 201 ~~~~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~~ 279 (369)
++.+++.| +++.+.+++.+|+.|++.... ...++..+|+|+++++ |||+||+....... ......+.+.+++|.
T Consensus 166 ~~~~~~~g~~~~~~~~~~~~G~~n~~~~~~--~~~~~~~vs~E~l~~~--~PD~I~~~~~~~~~-~~~~~~~~~l~~~p~ 240 (292)
T 3tef_A 166 GGNLTTFGANSRFSSVYKDFGFSETVPVSK--ESSHGDLISFEYIREH--NPKTLLVVDRDKVV-TKGETNIRQTFENDL 240 (292)
T ss_dssp TTEEEEECTTSTTTHHHHTSCCEESSCCCS--CCTTCEECCHHHHHHH--CCSEEEEEETHHHH-SSSCCCHHHHHSCHH
T ss_pred CCcceEecCCccchHHHHHcCCCccccccc--cccccccccHHHHHhc--CCCEEEEecCcccc-cccHHHHHHHHcCcc
Confidence 67778877 999999999999999987442 2234678999999999 99999875321000 001113344445799
Q ss_pred CccccceeeCcEEEeccCCCCCcCcccccc--cCCCHHHHHHHHHHHh
Q 044166 280 KSCFAFLTNQSLWRFDKRNQNSLALDWFDG--AVSQPQLVLADLTEAL 325 (369)
Q Consensus 280 ~~~l~AVkngrVy~~~~~~~p~g~~~~~~~--~~~~p~~vL~dla~~l 325 (369)
|++++||||||||.++.. .||.. |+.....++.+|.+.+
T Consensus 241 w~~l~AVkngrVy~vd~~-------~w~~~~~g~~a~~~~l~~l~~al 281 (292)
T 3tef_A 241 VKATTAYKNGHIAYLDVN-------AWYIAISGVKATEQMVADMKASV 281 (292)
T ss_dssp HHTSHHHHTTCEEECCHH-------HHTTSTTCHHHHHHHHHHHHHC-
T ss_pred hhcCCHhHCCCEEEECHH-------HHhccCchHHHHHHHHHHHHHHh
Confidence 999999999999999642 35432 3334455677776554
No 19
>1n2z_A Vitamin B12 transport protein BTUF; HET: CNC PG4; 2.00A {Escherichia coli} SCOP: c.92.2.2 PDB: 2qi9_F* 4dbl_E 1n4a_A* 1n4d_A
Probab=99.95 E-value=2.5e-28 Score=223.66 Aligned_cols=225 Identities=14% Similarity=0.020 Sum_probs=168.6
Q ss_pred cCceEEEec-CCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCCC---chhhhccCceEE--ecC--CC---
Q 044166 60 PMSNYSVDT-DFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKS---EPLQFSQYAAHF--TTD--SD--- 127 (369)
Q Consensus 60 Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~~---n~E~i~~l~P~~--~~~--~~--- 127 (369)
|++|||+.+ ...++ .+||+.+ ||++......+.+ .+++.+|.. |+|+|++++|+| .+. ..
T Consensus 1 ~p~RIvsl~~~~~e~l~aLG~~~--Vg~~~~~~~~~~~------~~~p~vg~~~~~n~E~i~~l~PDLIi~~~~~~~~~~ 72 (245)
T 1n2z_A 1 AAPRVITLSPANTELAFAAGITP--VGVSSYSDYPPQA------QKIEQVSTWQGMNLERIVALKPDLVIAWRGGNAERQ 72 (245)
T ss_dssp CCCCEEECSHHHHHHHHHTTCCC--SBEETTCCCSGGG------GGSCEEEETTEECHHHHHHTCCSEEEECTTTSCHHH
T ss_pred CCCEEEEcCchHHHHHHHcCCcc--ccccCcCCCCHHH------hCCCeeCCCCCCCHHHHhccCCCEEEEeCCCCcHHH
Confidence 689999954 45677 9999988 8887411122332 235667653 999999999955 221 11
Q ss_pred ----CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCE
Q 044166 128 ----QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGV 203 (369)
Q Consensus 128 ----~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~ 203 (369)
++.||||+.+.. .+.....++++.+|++||+|++|++++++++++++++++++++. ++|+|++... .+.
T Consensus 73 ~~~L~~~gipvv~~~~---~~~~~~~~~i~~lg~~lg~~~~A~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~-~~~ 145 (245)
T 1n2z_A 73 VDQLASLGIKVMWVDA---TSIEQIANALRQLAPWSPQPDKAEQAAQSLLDQYAQLKAQYADK---PKKRVFLQFG-INP 145 (245)
T ss_dssp HHHHHHHTCCEEECCC---CSHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHTTS---CCEEEEECBC-SSS
T ss_pred HHHHHHCCCcEEEeCC---CCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhcCC---CCCeEEEEEc-CCC
Confidence 467999998752 34456788999999999999999999999999999999988752 5899987643 344
Q ss_pred EEEeC-CChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccCCCcc
Q 044166 204 WSFTK-EAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADKSC 282 (369)
Q Consensus 204 ~~~~g-~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (369)
+++.| +++.+++++++|++|++.+.. .++..+|+|+|+++ |||+||+... ..+.+ .++|.|++
T Consensus 146 ~~~~g~~s~~~~~~~~~G~~n~~~~~~----~~~~~vs~E~l~~~--~pDvI~~~~~-------~~~~~---~~~p~w~~ 209 (245)
T 1n2z_A 146 PFTSGKESIQNQVLEVCGGENIFKDSR----VPWPQVSREQVLAR--SPQAIVITGG-------PDQIP---KIKQYWGE 209 (245)
T ss_dssp CBCCCSSSHHHHHHHHTTEEETTTTCS----SSSCBCCHHHHHTT--CCSEEEEESC-------GGGHH---HHHHHHTS
T ss_pred CcccCCCchHHHHHHHcCCeeccccCC----CCCCccCHHHHHhh--CCCEEEEcCC-------chhhh---hhhhhhhh
Confidence 67776 899999999999999998432 35778999999998 9999997421 11122 23689999
Q ss_pred -ccceeeCcEEEeccCCCCCcCcccc-cccCCCHHHHHHHHHHHhCCC
Q 044166 283 -FAFLTNQSLWRFDKRNQNSLALDWF-DGAVSQPQLVLADLTEALFPT 328 (369)
Q Consensus 283 -l~AVkngrVy~~~~~~~p~g~~~~~-~~~~~~p~~vL~dla~~lhPe 328 (369)
++| |||.++. +|| ..++..+ ..+++|+++|||+
T Consensus 210 ~l~A----rV~~~~~--------~~~~~~g~~~~-~~~~~la~~l~P~ 244 (245)
T 1n2z_A 210 QLKI----PVIPLTS--------DWFERASPRII-LAAQQLCNALSQV 244 (245)
T ss_dssp CSCC----CEEEECH--------HHHHSSSTTHH-HHHHHHHHHHTTC
T ss_pred cCCe----EEEEECc--------chhcCCCCcHH-HHHHHHHHHhCCC
Confidence 999 9999954 255 3455444 4789999999997
No 20
>4b8y_A FHUD2; transport protein-siderophore complex, transport protein, VA siderophore, class III solute binding, inhibitor protein (S; HET: AHO; 1.90A {Staphylococcus aureus subsp}
Probab=99.95 E-value=7.1e-28 Score=224.57 Aligned_cols=243 Identities=9% Similarity=-0.016 Sum_probs=167.6
Q ss_pred eEEEecCceEEEe-cCCccc-cccCCCCcEEEecCCCcCcHHHHhhhcCCcccccCCCchhhhccCceEE--ecCCC---
Q 044166 55 KSFVIPMSNYSVD-TDFFPG-KLLGLLSSMKGMTSESVASGCVLKLYQGGEIGLVNKSEPLQFSQYAAHF--TTDSD--- 127 (369)
Q Consensus 55 ~~i~~Pv~RIv~~-~~~~~~-~~Lg~~d~IvGv~~~~~~~p~~~~~~~~g~i~~~G~~n~E~i~~l~P~~--~~~~~--- 127 (369)
.+|+.|++|||+. .+.+++ .+||+ ++||++......+.+...+ .+++.+|..|+|+|++++|+| .+...
T Consensus 16 v~i~~~p~RIv~l~~~~~e~l~aLG~--~~Vgv~~~~~~~~~~~~~~--~~v~~vg~~n~E~i~~l~PDlIi~~~~~~~~ 91 (277)
T 4b8y_A 16 VDIPKDPKRIAVVAPTYAGGLKKLGA--NIVAVNQQVDQSKVLKDKF--KGVTKIGDGDVEKVAKEKPDLIIVYSTDKDI 91 (277)
T ss_dssp EEEESSCSSEEECSGGGHHHHHHTTC--CEEEEEGGGGGCTTHHHHT--TTSEEECTTCHHHHHHTCCSEEEEETTCTTH
T ss_pred EEccCCCcEEEEeChhhHHHHHHcCC--cEEEeecccccchhhhhhh--cCCccCCCCCHHHHhhCCCCEEEecCCHHHH
Confidence 5788899999995 445677 89998 8999984111224444332 457888978999999999955 22222
Q ss_pred ---CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCEEEEEeeeCCE
Q 044166 128 ---QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAG-KTKPFKPIVAWMEFYNGV 203 (369)
Q Consensus 128 ---~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~-~~~~~kp~V~~~~~~~~~ 203 (369)
++. +|++.+.... ....++++.+|++||++++|++++++++++++++++++++ +++.++++|+. ..++.
T Consensus 92 ~~L~~~-~pvv~~~~~~----~~~~~~~~~lg~~~g~~~~A~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~ 164 (277)
T 4b8y_A 92 KKYQKV-APTVVVDYNK----HKYLEQQEMLGKIVGKEDKVKAWKKDWEETTAKDGKEIKKAIGQDATVSLFD--EFDKK 164 (277)
T ss_dssp HHHHHH-SCEEEECGGG----SCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEE--EETTE
T ss_pred HHHHhh-CCEEEEcCCC----CCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCeEEEEE--ecCCc
Confidence 244 8999875221 1356899999999999999999999999999999988764 33223444443 34677
Q ss_pred EEEeC-CChHH--HHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEecCCCCCCCCCChhhHHhhcccCCC
Q 044166 204 WSFTK-EAFKL--KYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPANYTQSTFLENIDAADK 280 (369)
Q Consensus 204 ~~~~g-~s~~~--~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (369)
+++.| +++.+ .+++++|++|++.........++..+|+|+|+++ |||+||+.... . ..+ +..++|.|
T Consensus 165 ~~~~g~~~~~~~~~i~~~~G~~~~~~~~~~~~~~~~~~vs~E~l~~~--~pDvI~~~~~~---~--~~~---~l~~~p~~ 234 (277)
T 4b8y_A 165 LYTYGDNWGRGGEVLYQAFGLKMQPEQQKLTAKAGWAEVKQEEIEKY--AGDYIVSTSEG---K--PTP---GYESTNMW 234 (277)
T ss_dssp EEEECTTSSTTHHHHHTTSCCEECHHHHHHHTTTSEEECCGGGGGGG--CCSEEEESBTT---S--CCC---GGGSSHHH
T ss_pred EEEEecCCCccHHHHHHhcCCCCChHHHhhccCCCceeeCHHHHHHh--cCCEEEEeCCC---c--chh---hhhcChhh
Confidence 88887 66543 6778889998865100011245789999999999 99999985421 1 111 22347999
Q ss_pred ccccceeeCcEEEeccCCCCCcCcccccccCCCHHHHHHHHHHHh
Q 044166 281 SCFAFLTNQSLWRFDKRNQNSLALDWFDGAVSQPQLVLADLTEAL 325 (369)
Q Consensus 281 ~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~~p~~vL~dla~~l 325 (369)
++++||||||||.++.. .|+..++.....++++|...|
T Consensus 235 ~~l~AVk~~rV~~~~~~-------~~~~~gp~~~~~~l~~l~~~l 272 (277)
T 4b8y_A 235 KNLKATKEGHIVKVDAG-------TYWYNDPYTLDFMRKDLKEKL 272 (277)
T ss_dssp HTSHHHHTTCEEECBHH-------HHTCCSHHHHHHHHHHHHHHH
T ss_pred hcChHHhCCcEEEEcch-------heeecCHHHHHHHHHHHHHHH
Confidence 99999999999999642 244445444444555555443
No 21
>3mwf_A Iron-regulated ABC transporter siderophore-bindin SIRA; ABC transporter binding protein, transport protein; HET: SE8; 1.70A {Staphylococcus aureus subsp} PDB: 3mwg_A
Probab=99.94 E-value=1.5e-28 Score=231.46 Aligned_cols=254 Identities=11% Similarity=0.041 Sum_probs=173.8
Q ss_pred eEEEecCceEEEec-CCccc-cccCCCCcEEEecCCCcCcH---HHHhhhcCCcccccCCC---chhhhccCceEE--ec
Q 044166 55 KSFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTSESVASG---CVLKLYQGGEIGLVNKS---EPLQFSQYAAHF--TT 124 (369)
Q Consensus 55 ~~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~~~~~~p---~~~~~~~~g~i~~~G~~---n~E~i~~l~P~~--~~ 124 (369)
.+|+.|++|||+.+ ..+++ .+||+ ++||++..+...| .+...+ .+++.+|.. |+|+|++++|+| .+
T Consensus 15 v~i~~~p~RIv~l~~~~~e~l~aLG~--~~Vg~~~~~~~~~~~~~~~~~~--~~~~~vg~~~~~n~E~i~~l~PDlIi~~ 90 (298)
T 3mwf_A 15 TEIKGKPKRVVTLYQGATDVAVSLGV--KPVGAVESWTQKPKFEYIKNDL--KDTKIVGQEPAPNLEEISKLKPDLIVAS 90 (298)
T ss_dssp EEECSCCCSEEECSHHHHHHHHHTTC--CCSEECCCSSSTTSCTTTGGGS--TTCEECEETTEECHHHHHHTCCSEEEEE
T ss_pred EEeCCCCCEEEEcCCCcHHHHHHCCC--ceEEEecccccccchhhHHHHh--cCCCccCCCCCCCHHHHHhCCCCEEEEc
Confidence 56788999999954 45677 99998 4899874222222 222222 356777763 999999999955 22
Q ss_pred CC---C-----CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhC-CCCCCCCEEE
Q 044166 125 DS---D-----QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAG-KTKPFKPIVA 195 (369)
Q Consensus 125 ~~---~-----~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~-~~~~~kp~V~ 195 (369)
.. + ++.| |++.+. +.+ ...++|+++|.+||++++|++++++++++++++++++++ ++...+|+|+
T Consensus 91 ~~~~~~~~~~L~~~~-p~v~~~-~~~----~~~~~i~~lg~~~g~~~~A~~l~~~~~~~~~~v~~~~~~~~~~~~~~~v~ 164 (298)
T 3mwf_A 91 KVRNEKVYDQLSKIA-PTVSTD-TVF----KFKDTTKLMGKALGKEKEAEDLLKKYDDKVAAFQKDAKAKYKDAWPLKAS 164 (298)
T ss_dssp HHHHGGGHHHHHHHS-CEEEES-CSS----CHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSCBEE
T ss_pred CCCCHHHHHHHhccC-CEEEeC-Ccc----cHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCeEE
Confidence 21 1 2445 998775 333 357899999999999999999999999999999766543 2212468887
Q ss_pred EEeeeCCEEEEeC-CChHHHHHHHhCCccccccCC--CcccCccccCCHHHHHHhcCCCcEEEecCCCCCC-CCCC-hhh
Q 044166 196 WMEFYNGVWSFTK-EAFKLKYVEDAGGENVDSSIN--KMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEP-ANYT-QST 270 (369)
Q Consensus 196 ~~~~~~~~~~~~g-~s~~~~li~~AGg~nv~~~~~--~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~-~~~~-~~~ 270 (369)
+....++.+++.| + +.+++++++|++|++.+.. .....++..+|+|+|+++ |||+||+....... .... ...
T Consensus 165 ~~~~~~~~~~~~~~~-~~~~~i~~~G~~n~~~~~~~~~~~~~~~~~vs~E~l~~~--~PDvI~~~~~~~~~~~~~~~~~~ 241 (298)
T 3mwf_A 165 VVNFRADHTRIYAGG-YAGEILNDLGFKRNKDLQKQVDNGKDIIQLTSKESIPLM--NADHIFVVKSDPNAKDAALVKKT 241 (298)
T ss_dssp EEEECSSCEEEESSH-HHHHHHHHTTCBCCHHHHHHHHTTCSEEEECCGGGGGGG--CCSEEEEEECCTTCSCTHHHHHH
T ss_pred EEEEcCCeEEEecCC-cchhHHHHcCCCCchhhhhcccCCCCcccccCHhHHhhc--CCCEEEEEecCccccccchhhHH
Confidence 7665556667776 6 9999999999999998420 011123458999999999 99999985421100 0000 112
Q ss_pred HHhhcccCCCccccceeeCcEEE-eccCCCCCcCccccc-ccCCCHHHHHHHHHHHhCCC
Q 044166 271 FLENIDAADKSCFAFLTNQSLWR-FDKRNQNSLALDWFD-GAVSQPQLVLADLTEALFPT 328 (369)
Q Consensus 271 ~~~~~~~~~~~~l~AVkngrVy~-~~~~~~p~g~~~~~~-~~~~~p~~vL~dla~~lhPe 328 (369)
..+..++|.|++++||||||||. ++.. .|+. .++.....++++|.+.|.=+
T Consensus 242 ~~~l~~~p~w~~l~AVk~grV~~~~~~~-------~~~~~~g~~~~~~~l~~l~~~~~~~ 294 (298)
T 3mwf_A 242 ESEWTSSKEWKNLDAVKNNQVSDDLDEI-------TWNLAGGYKSSLKLIDDLYEKLNIE 294 (298)
T ss_dssp HHHHHTSHHHHHSHHHHTTCEECSCCHH-------HHTTSCSHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhCchhhcCchhcCCcEEEecChh-------hhccCCCHHHHHHHHHHHHHHHhcc
Confidence 33334579999999999999999 8642 2444 44555566777777766543
No 22
>2wi8_A Iron-uptake system-binding protein; bacillibactin and enterobactin binding, triscatecholate BIND protein, iron transport; 1.55A {Bacillus subtilis} PDB: 2why_A 2xuz_A* 2xv1_A* 2phz_A
Probab=99.94 E-value=9.1e-28 Score=227.70 Aligned_cols=249 Identities=10% Similarity=0.091 Sum_probs=172.2
Q ss_pred eEEEecCceEE-Eec-CCccc-cccCCCCcEEEecC-CCcCcHHHHhhhcCCcccccCCC---chhhhccCceEE--ecC
Q 044166 55 KSFVIPMSNYS-VDT-DFFPG-KLLGLLSSMKGMTS-ESVASGCVLKLYQGGEIGLVNKS---EPLQFSQYAAHF--TTD 125 (369)
Q Consensus 55 ~~i~~Pv~RIv-~~~-~~~~~-~~Lg~~d~IvGv~~-~~~~~p~~~~~~~~g~i~~~G~~---n~E~i~~l~P~~--~~~ 125 (369)
.+|+.|++||| +.+ ..+++ .+||+ ++||++. .....+.+... ..+++.+|.. |+|+|++|+|+| .+.
T Consensus 29 vti~~~p~RIV~~l~~~~~e~l~aLG~--~~vg~~~~~~~~p~~~~~~--~~~ip~vG~~~~~n~E~I~~l~PDLIi~~~ 104 (311)
T 2wi8_A 29 YEVTVPTDKIAITGSVESMEDAKLLDV--HPQGAISFSGKFPDMFKDI--TDKAEPTGEKMEPNIEKILEMKPDVILAST 104 (311)
T ss_dssp EEEEESCSCEEECSCHHHHHHHHHHTC--CCSEEEEBTTBCCGGGTTT--CTTCEEEEETTEECHHHHHHHCCSEEEEET
T ss_pred EEeCCCcceEEEeCChhhhhHHHHcCC--ceEEEecCCCcCHHHHHHH--hcCccccCCCCCCCHHHHHhCCCCEEEEcC
Confidence 57888999999 744 44677 88998 5899883 11111223222 2457777753 999999999955 222
Q ss_pred -CC-------CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEE
Q 044166 126 -SD-------QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWM 197 (369)
Q Consensus 126 -~~-------~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~ 197 (369)
.. ++.| |++++. +. .....++|+++|++||+|++|++++++++++++++++++++.....++.|++
T Consensus 105 ~~~~~~~~~L~~~g-p~v~~~-~~---~~~~~~~i~~lg~~lg~e~~A~~li~~~~~~~~~v~~~~~~~~~~~~v~~~~- 178 (311)
T 2wi8_A 105 KFPEKTLQKISTAG-TTIPVS-HI---SSNWKENMMLLAQLTGKEKKAKKIIADYEQDLKETKTKINDKAKDSKALVIR- 178 (311)
T ss_dssp TSCHHHHHHHHTTS-CEEEEC-CC---GGGHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHSCHHHHTSCEEEEE-
T ss_pred ccCHHHHHHHHhhC-CEEEee-CC---CcCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhhhccCCCcEEEEE-
Confidence 22 4567 777664 21 2346789999999999999999999999999999998876521112333443
Q ss_pred eeeCCEEEEeC-CC-hHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhcCCCcEEEec-CCCCCCCCCChhhHHhh
Q 044166 198 EFYNGVWSFTK-EA-FKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAILCTVDVVIDG-TYTLEPANYTQSTFLEN 274 (369)
Q Consensus 198 ~~~~~~~~~~g-~s-~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~~npDvii~~-~~~~~~~~~~~~~~~~~ 274 (369)
..++.+++.| ++ +.+.+++++|++|... ..+ ..++..+|+|+|+++ |||+||+. ....... ......+.
T Consensus 179 -~~~~~~~~~g~~s~~~~~l~~~~G~~~~~~-~~~--~~~~~~vs~E~l~~~--~PDvI~~~~~~~~~~~--~~~~~~~l 250 (311)
T 2wi8_A 179 -IRQGNIYIYPEQVYFNSTLYGDLGLKAPNE-VKA--AKAQELISLEKLSEM--NPDHIFVQFSDDENAD--KPDALKDL 250 (311)
T ss_dssp -EETTEEEECCTTSTTHHHHTTTTCCCCCHH-HHH--CSSSEECCHHHHHHH--CCSEEEEEECGGGCTT--CTTHHHHH
T ss_pred -EcCCceEEecCCCccHHHHHHHcCCCCccc-ccC--CCCCCccCHHHHhhc--CCCEEEEEeecCcccc--hHHHHHHH
Confidence 3346788877 66 7889999999997322 111 134678999999999 99999974 2211100 01123333
Q ss_pred cccCCCccccceeeCcEEEeccCCCCCcCcccccccCC-CHHHHHHHHHHHhCCC
Q 044166 275 IDAADKSCFAFLTNQSLWRFDKRNQNSLALDWFDGAVS-QPQLVLADLTEALFPT 328 (369)
Q Consensus 275 ~~~~~~~~l~AVkngrVy~~~~~~~p~g~~~~~~~~~~-~p~~vL~dla~~lhPe 328 (369)
.++|.|++++||||||||.++.. .|+..++. ....+|++|+++|+-.
T Consensus 251 ~~~p~~~~l~AVk~grV~~~~~~-------~~~~~g~~~s~~~~l~~l~~~l~~~ 298 (311)
T 2wi8_A 251 EKNPIWKSLKAVKEDHVYVNSVD-------PLAQGGTAWSKVRFLKAAAEKLTQN 298 (311)
T ss_dssp HHSHHHHTSHHHHTTCEEETSSC-------TTCCSSSHHHHHHHHHHHHHHHSTT
T ss_pred hcChhhhcCchhhCCcEEEeCcc-------hhhcCCCHHHHHHHHHHHHHHHhcC
Confidence 45799999999999999998542 35555665 6778899999999976
No 23
>4h59_A PIAA, iron-compound ABC transporter, iron compound-BIND protein; center for structural genomics of infectious diseases; HET: MSE B3P; 1.66A {Streptococcus pneumoniae}
Probab=99.90 E-value=1.3e-24 Score=204.39 Aligned_cols=229 Identities=10% Similarity=-0.044 Sum_probs=151.8
Q ss_pred eEEEecCceEEEec-CCccc-cccCCCCcEEEecC-C------CcCcHHHHhhhc--CCcccccCCC---chhhhccCce
Q 044166 55 KSFVIPMSNYSVDT-DFFPG-KLLGLLSSMKGMTS-E------SVASGCVLKLYQ--GGEIGLVNKS---EPLQFSQYAA 120 (369)
Q Consensus 55 ~~i~~Pv~RIv~~~-~~~~~-~~Lg~~d~IvGv~~-~------~~~~p~~~~~~~--~g~i~~~G~~---n~E~i~~l~P 120 (369)
.+|+.|++|||+.+ ...++ .+||+ ++||+.. . ....|.+...+. .+.+..+|.. |+|+|++++|
T Consensus 16 vti~~~P~RIV~l~~~~~e~l~aLG~--~pVg~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~n~E~i~~l~P 93 (308)
T 4h59_A 16 TILDKKPERVATIAWGNHDVALALGI--VPVGFSKANYGVSADKGVLPWTEEKIKELNGKANLFDDLDGLNFEAISNSKP 93 (308)
T ss_dssp EEESSCCSSEEECSSSHHHHHHHTTC--CCSBEECCCSSSCTTTCSCHHHHHHHHHTTCCCCEECCTTSCCHHHHHHTCC
T ss_pred EEeCCCCCEEEEeCccHHHHHHHCCC--ceEEEEeccccccccccccHhHHHHHhhhcccccccCCCCCCCHHHHHhcCC
Confidence 57888999999954 45677 89997 5788762 1 112355444322 2234445543 9999999999
Q ss_pred EE-e-cCC--C-----CCCCc-eEEEcCCCCCCchhhHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhCCCC--
Q 044166 121 HF-T-TDS--D-----QPQAC-NFANFAPFGEDGPLRRAEWIKFLGIFANAEARANQVYNAVKENYLCLTRVAAGKTK-- 188 (369)
Q Consensus 121 ~~-~-~~~--~-----~~~gI-pvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~A~~~~~~~~~~~~~i~~~~~~~~~-- 188 (369)
+| + ... . +...| |++....... .....++++.+|.+||++++|+++++++++++++++++++.+..
T Consensus 94 DLIi~~~~~~~~~~~~~l~~i~~~~~~~~~~~--~~~~~~~i~~lg~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (308)
T 4h59_A 94 DVILAGYSGITKEDYDTLSKIAPVAAYKSKPW--QTLWRDMIKIDSKALGMEKEGDELIKNTEARISKELEKHPEIKGKI 171 (308)
T ss_dssp SEEEESSCCCCHHHHHHHHTTSCEEECSSSTT--CCCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CEEEecCccccHHHHHHhhccccceeeccccc--HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 55 3 221 1 12223 5555432211 11245789999999999999999999999999999988654321
Q ss_pred CCCCE-EEE-EeeeCCEEEEeC-CChHHHHHHHhCCccccccCC-CcccCccccCCHHHHHHhcCCCcEEEecCCCCCCC
Q 044166 189 PFKPI-VAW-MEFYNGVWSFTK-EAFKLKYVEDAGGENVDSSIN-KMTYNISNSDDLEQLHAILCTVDVVIDGTYTLEPA 264 (369)
Q Consensus 189 ~~kp~-V~~-~~~~~~~~~~~g-~s~~~~li~~AGg~nv~~~~~-~~~~~g~~~vs~E~v~~~~~npDvii~~~~~~~~~ 264 (369)
..++. +.+ .....+.+++.| +++.+.+++++|+.|+..... .....++..+|+|+++++ |||+||+... .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~G~~~~~~~~~~~~~~~~~~~vs~E~l~~~--~pd~iii~~~--~-- 245 (308)
T 4h59_A 172 KGKKVLFTMINAADTSKFWIYTSKDPRANYLTDLGLVFPESLKEFESEDSFAKEISAEEANKI--NDADVIITYG--D-- 245 (308)
T ss_dssp TTCBEEEEECCTTCTTEEEEECTTSHHHHHHHHTTCBCCTTHHHHCCTTCSEEEEEGGGGGGG--TTCSEEEEEE--C--
T ss_pred cCCceEEEEEEeccCceEEEecCCCcccHHHHHhcCcccccccccccCCCCccccCHHHHHhh--CCCeEEEecC--C--
Confidence 01222 222 223345677777 999999999999998764210 112234678999999998 9998776421 1
Q ss_pred CCChhhHHhhcccCCCccccceeeCcEEEecc
Q 044166 265 NYTQSTFLENIDAADKSCFAFLTNQSLWRFDK 296 (369)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l~AVkngrVy~~~~ 296 (369)
.. ...+..++|.|++++||||||||.++.
T Consensus 246 ~~---~~~~l~~~p~~~~l~AVk~grV~~v~~ 274 (308)
T 4h59_A 246 DK---TLEALQKDPLLGKINAIKNGAVAVIPD 274 (308)
T ss_dssp TT---HHHHHHTCTTTTTSHHHHHTCEEEEET
T ss_pred hH---HHHHHHhCcCcccCChhhCCcEEEECc
Confidence 11 233344579999999999999999965
No 24
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=59.58 E-value=20 Score=30.83 Aligned_cols=98 Identities=12% Similarity=-0.063 Sum_probs=59.7
Q ss_pred hHHHHHHHHHcCcHH--HHHHHHH--HHHHHHHHHHHHHhC--CCCCCCCEEEEEeeeCCEEEEeCCChHHHHHHHhCCc
Q 044166 149 AEWIKFLGIFANAEA--RANQVYN--AVKENYLCLTRVAAG--KTKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGE 222 (369)
Q Consensus 149 ~e~ik~lG~l~gke~--~A~~~~~--~~~~~~~~i~~~~~~--~~~~~kp~V~~~~~~~~~~~~~g~s~~~~li~~AGg~ 222 (369)
..-++.+|.+|++.+ -+++++. .+++.+..++..... .....+++|++....++ +..-|..+++.+++.+|-+
T Consensus 44 ~p~m~~VG~lw~~g~i~v~q~~~aa~~~~~~l~~l~~~l~~~~~~~~~~~~vll~~v~gd-~HdiG~~iv~~~l~~~G~~ 122 (215)
T 3ezx_A 44 SVGMKIVGDKFEAAEIFLPQIMMSGKAMSNAMEVLTPELEKNKKEGEEAGLAITFVAEGD-IHDIGHRLVTTMLGANGFQ 122 (215)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHTSSCCC---CCEEEEEECTTC-CCCHHHHHHHHHHHHTSCE
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCeEEEEeCCCC-hhHHHHHHHHHHHHHCCCe
Confidence 346889999998764 4555443 344555555555543 12235788887653222 2223556788899999988
Q ss_pred cccccCCCcccCccccCCHHHHHHhc--CCCcEEEe
Q 044166 223 NVDSSINKMTYNISNSDDLEQLHAIL--CTVDVVID 256 (369)
Q Consensus 223 nv~~~~~~~~~~g~~~vs~E~v~~~~--~npDvii~ 256 (369)
-+.- ...++.|.+++.+ .+||++.+
T Consensus 123 Vi~L---------G~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 123 IVDL---------GVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp EEEC---------CSSCCHHHHHHHHHHTTTSCEEE
T ss_pred EEEc---------CCCCCHHHHHHHHHHcCCCEEEE
Confidence 7654 1356677765433 49999987
No 25
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A {Azotobacter vinelandii}
Probab=57.32 E-value=15 Score=35.86 Aligned_cols=86 Identities=9% Similarity=-0.005 Sum_probs=50.7
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcH---HHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCEEEEEeeeCCE
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAE---ARANQVYNAVKENYLCLTRVAA-GKTKPFKPIVAWMEFYNGV 203 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke---~~A~~~~~~~~~~~~~i~~~~~-~~~~~~kp~V~~~~~~~~~ 203 (369)
++.|||.+.... -..-+..+||+.++++||++ ++++++++.-++++...-.... .+. ..+|++... +
T Consensus 271 ~~~GiP~i~~~p---~Gi~~T~~~L~~ia~~~g~~~i~~~~e~~i~~er~~~~~al~~~~~~l~---GKrv~i~~~--~- 341 (483)
T 3pdi_A 271 ETYGTPWFEGSF---YGITDTSQALRDFARLLDDPDLTARTEALIAREEAKVRAALEPWRARLE---GKRVLLYTG--G- 341 (483)
T ss_dssp HHHCCCEEEECS---SSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TCEEEEECS--S-
T ss_pred HHhCCCEeecCC---CCHHHHHHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHHHHHHHhc---CCEEEEECC--C-
Confidence 467999886532 12345678999999999975 5778888776666544322222 221 244554211 1
Q ss_pred EEEeCCC-hHHHHHHHhCCccccc
Q 044166 204 WSFTKEA-FKLKYVEDAGGENVDS 226 (369)
Q Consensus 204 ~~~~g~s-~~~~li~~AGg~nv~~ 226 (369)
... -+..+++..|.+.+..
T Consensus 342 ----~~~~~l~~~L~ElGmevv~~ 361 (483)
T 3pdi_A 342 ----VKSWSVVSALQDLGMKVVAT 361 (483)
T ss_dssp ----SCHHHHHHHHHHHTCEEEEE
T ss_pred ----chHHHHHHHHHHCCCEEEEE
Confidence 111 2445677788886654
No 26
>1mio_A Nitrogenase molybdenum iron protein (alpha chain); HET: HCA CFM CLP; 3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Probab=50.71 E-value=44 Score=33.03 Aligned_cols=87 Identities=8% Similarity=-0.016 Sum_probs=51.3
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCc---HHHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCEEEEEeeeCCE
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANA---EARANQVYNAVKENYLCLTRVAA-GKTKPFKPIVAWMEFYNGV 203 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gk---e~~A~~~~~~~~~~~~~i~~~~~-~~~~~~kp~V~~~~~~~~~ 203 (369)
++.|+|.+... .. ..-+..+||+.++++||. +++++++++.-++++...-.... .+. ..+|++.. ++.
T Consensus 274 er~GiP~i~~~-pi--G~~~T~~~Lr~ia~~~g~~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~---GKrv~i~~--~~~ 345 (533)
T 1mio_A 274 TKYGIPWIKCN-FI--GVDGIVETLRDMAKCFDDPELTKRTEEVIAEEIAAIQDDLDYFKEKLQ---GKTACLYV--GGS 345 (533)
T ss_dssp HHHCCCEEECC-CS--SHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TCEEEEEE--SSS
T ss_pred HHhCCCeEEec-CC--CHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHHHHHhC---CCEEEEEC--Cch
Confidence 46799999764 21 234567899999999996 44677888776665543322221 221 23455421 110
Q ss_pred EEEeCCChHHHHHHHhCCccccc
Q 044166 204 WSFTKEAFKLKYVEDAGGENVDS 226 (369)
Q Consensus 204 ~~~~g~s~~~~li~~AGg~nv~~ 226 (369)
+ ---+.+++...|.+.+..
T Consensus 346 -~---~~~l~~~l~ElGm~vv~~ 364 (533)
T 1mio_A 346 -R---SHTYMNMLKSFGVDSLVA 364 (533)
T ss_dssp -H---HHHHHHHHHHHTCEEEEE
T ss_pred -H---HHHHHHHHHHCCCEEEEE
Confidence 0 112455788899986653
No 27
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=48.46 E-value=28 Score=34.09 Aligned_cols=87 Identities=14% Similarity=0.124 Sum_probs=51.9
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHh-CCCCCCCCEEEEEeeeCCEE
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANA--EARANQVYNAVKENYLCLTRVAA-GKTKPFKPIVAWMEFYNGVW 204 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gk--e~~A~~~~~~~~~~~~~i~~~~~-~~~~~~kp~V~~~~~~~~~~ 204 (369)
++.|+|.+.... . ..-+..+||+.++++||+ +++++++++..++++...-.... .+. ..+|++... +.
T Consensus 288 ~~~GiP~i~~~p-~--G~~~T~~~L~~ia~~~g~~~~~~~e~~i~~e~~~~~~~l~~~~~~l~---GKrv~i~g~--~~- 358 (492)
T 3u7q_A 288 EKYGIPWMEYNF-F--GPTKTIESLRAIAAKFDESIQKKCEEVIAKYKPEWEAVVAKYRPRLE---GKRVMLYIG--GL- 358 (492)
T ss_dssp HHHCCCEEECCC-S--SHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TCEEEECBS--SS-
T ss_pred HHhCCceEecCc-c--CHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHHhC---CCEEEEECC--Cc-
Confidence 466999987652 2 344567899999999994 67788888877666554433222 121 245554211 10
Q ss_pred EEeCCChHHHHHHHhCCccccc
Q 044166 205 SFTKEAFKLKYVEDAGGENVDS 226 (369)
Q Consensus 205 ~~~g~s~~~~li~~AGg~nv~~ 226 (369)
. ---+.++++..|.+.+..
T Consensus 359 ~---~~~la~~L~ElGm~vv~~ 377 (492)
T 3u7q_A 359 R---PRHVIGAYEDLGMEVVGT 377 (492)
T ss_dssp H---HHHTHHHHHTTTCEEEEE
T ss_pred h---HHHHHHHHHHCCCEEEEE
Confidence 0 011345667788876653
No 28
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=46.04 E-value=15 Score=35.28 Aligned_cols=89 Identities=9% Similarity=-0.029 Sum_probs=50.7
Q ss_pred CCCCceEEEcCCCCCCchhhHhHHHHHHHHHcCcHHH-HHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEEE
Q 044166 128 QPQACNFANFAPFGEDGPLRRAEWIKFLGIFANAEAR-ANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSF 206 (369)
Q Consensus 128 ~~~gIpvv~~~~~~e~~pl~~~e~ik~lG~l~gke~~-A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~~ 206 (369)
++.|+|.+..... -..-+..+||+.++++||++.. ++++++..++++....+.....- ...+|++... +.
T Consensus 247 e~~GiP~i~~~~P--~G~~~T~~~l~~la~~~g~~~~~~e~~i~~e~~~~~~~l~~~~~~l--~Gkrv~i~g~--~~--- 317 (437)
T 3aek_A 247 ERRGAKRIAAPFP--FGEEGTTLWLKAVADAYGVSAEKFEAVTAAPRARAKKAIAAHLETL--TGKSLFMFPD--SQ--- 317 (437)
T ss_dssp HHTTCEECCCCCS--CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTHHHH--TTCEEEECSS--SS---
T ss_pred HHcCCCeEecCCC--cCHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHHh--CCCEEEEEcC--ch---
Confidence 5789999865311 1122356899999999999876 78877776666555433222111 1245554321 10
Q ss_pred eCCChHHHHH-HHhCCccccc
Q 044166 207 TKEAFKLKYV-EDAGGENVDS 226 (369)
Q Consensus 207 ~g~s~~~~li-~~AGg~nv~~ 226 (369)
----+.+++ +..|.+-+..
T Consensus 318 -~~~~l~~~L~~elG~~vv~~ 337 (437)
T 3aek_A 318 -LEIPLARFLARECGMKTTEI 337 (437)
T ss_dssp -CHHHHHHHHHHTTCCEEEEE
T ss_pred -HHHHHHHHHHHHcCCEEEEE
Confidence 011245566 7888886653
No 29
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=43.69 E-value=42 Score=34.70 Aligned_cols=79 Identities=8% Similarity=-0.103 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEEEeCCChHHHHHHHhCCccccccCCCcccCccccCCHHHH
Q 044166 165 ANQVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQL 244 (369)
Q Consensus 165 A~~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~~~g~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v 244 (369)
+.+-|+.+....+...+... .||+|++....++ ....|..++..+++++|-+.+.. ...++.|++
T Consensus 583 ~~~~fe~lr~~~~~~~~~~g-----~r~kVvlatvg~D-~HdiG~~iVa~~l~~~GfeVi~l---------G~~v~~eei 647 (762)
T 2xij_A 583 ESKEITSAIKRVHKFMEREG-----RRPRLLVAKMGQD-GHDRGAKVIATGFADLGFDVDIG---------PLFQTPREV 647 (762)
T ss_dssp SCHHHHHHHHHHHHHHHHHS-----SCCEEEEECCSSC-CCCHHHHHHHHHHHHTTCEEEEC---------CTTCCHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcC-----CCCEEEEEecCcc-hhhHHHHHHHHHHHhCCeEEeeC---------CCCCCHHHH
Confidence 33456666665555443322 4799998754333 22335678888999999887643 245778888
Q ss_pred HHhc--CCCcEEEecC
Q 044166 245 HAIL--CTVDVVIDGT 258 (369)
Q Consensus 245 ~~~~--~npDvii~~~ 258 (369)
++.+ .+||+|.+.+
T Consensus 648 v~aA~e~~adiVglSs 663 (762)
T 2xij_A 648 AQQAVDADVHAVGVST 663 (762)
T ss_dssp HHHHHHTTCSEEEEEE
T ss_pred HHHHHHcCCCEEEEee
Confidence 7654 5999998753
No 30
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=37.73 E-value=34 Score=35.25 Aligned_cols=77 Identities=10% Similarity=-0.057 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEEEeCCChHHHHHHHhCCccccccCCCcccCccccCCHHHHHH
Q 044166 167 QVYNAVKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHA 246 (369)
Q Consensus 167 ~~~~~~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~~~g~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~ 246 (369)
+-|+.++.+.+...++.. .||+|++....++ ...-|..++..+++.+|-+.+.. ...++.|++++
T Consensus 577 ~~fe~Lr~~~~~~~~~~g-----~r~kVvlatvg~D-~HdiG~~iVa~~l~~~GfeVi~l---------G~~v~~eeiv~ 641 (727)
T 1req_A 577 PEVEEARELVEEFEQAEG-----RRPRILLAKMGQD-GHDRGQKVIATAYADLGFDVDVG---------PLFQTPEETAR 641 (727)
T ss_dssp HHHHHHHHHHHHHHHHHS-----SCCEEEEECBTTC-CCCHHHHHHHHHHHHHTCEEEEC---------CTTBCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-----CCCEEEEEeCCcc-hhHHHHHHHHHHHHhCCeEEEeC---------CCCCCHHHHHH
Confidence 345555554444433221 4799998754333 22335678888999999887653 24567788776
Q ss_pred hc--CCCcEEEecC
Q 044166 247 IL--CTVDVVIDGT 258 (369)
Q Consensus 247 ~~--~npDvii~~~ 258 (369)
.+ .+||+|.+.+
T Consensus 642 aA~e~~adiVglSs 655 (727)
T 1req_A 642 QAVEADVHVVGVSS 655 (727)
T ss_dssp HHHHTTCSEEEEEE
T ss_pred HHHHcCCCEEEEee
Confidence 54 4999998753
No 31
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=30.65 E-value=39 Score=27.53 Aligned_cols=59 Identities=19% Similarity=-0.026 Sum_probs=39.2
Q ss_pred CCCEEEEEeeeCCEEEEeCCChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhc--CCCcEEEecC
Q 044166 190 FKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAIL--CTVDVVIDGT 258 (369)
Q Consensus 190 ~kp~V~~~~~~~~~~~~~g~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~--~npDvii~~~ 258 (369)
.+|+|++....++ +..-|..+++.+++.+|-+-+.- ...++.|.+.+.+ .+||++.+..
T Consensus 17 ~~~~vlla~~~gd-~HdiG~~~va~~l~~~G~eVi~l---------G~~~p~e~lv~aa~~~~~diV~lS~ 77 (161)
T 2yxb_A 17 RRYKVLVAKMGLD-GHDRGAKVVARALRDAGFEVVYT---------GLRQTPEQVAMAAVQEDVDVIGVSI 77 (161)
T ss_dssp CSCEEEEEEESSS-SCCHHHHHHHHHHHHTTCEEECC---------CSBCCHHHHHHHHHHTTCSEEEEEE
T ss_pred CCCEEEEEeCCCC-ccHHHHHHHHHHHHHCCCEEEEC---------CCCCCHHHHHHHHHhcCCCEEEEEe
Confidence 4788887654332 23335668888999999887754 1246777776543 3999998753
No 32
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=29.56 E-value=29 Score=27.39 Aligned_cols=58 Identities=10% Similarity=-0.009 Sum_probs=39.3
Q ss_pred CCEEEEEeeeCCEEEEeCCChHHHHHHHhCCccccccCCCcccCccccCCHHHHHHhc--CCCcEEEecC
Q 044166 191 KPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENVDSSINKMTYNISNSDDLEQLHAIL--CTVDVVIDGT 258 (369)
Q Consensus 191 kp~V~~~~~~~~~~~~~g~s~~~~li~~AGg~nv~~~~~~~~~~g~~~vs~E~v~~~~--~npDvii~~~ 258 (369)
+|+|++....++ +..-|..+++.+++.+|-+-+.- ...++.|++.+.+ .+||++.+..
T Consensus 3 ~~~vvla~~~~d-~HdiG~~~v~~~l~~~G~~Vi~l---------G~~~p~e~~v~~a~~~~~d~v~lS~ 62 (137)
T 1ccw_A 3 KKTIVLGVIGSD-CHAVGNKILDHAFTNAGFNVVNI---------GVLSPQELFIKAAIETKADAILVSS 62 (137)
T ss_dssp CCEEEEEEETTC-CCCHHHHHHHHHHHHTTCEEEEE---------EEEECHHHHHHHHHHHTCSEEEEEE
T ss_pred CCEEEEEeCCCc-hhHHHHHHHHHHHHHCCCEEEEC---------CCCCCHHHHHHHHHhcCCCEEEEEe
Confidence 688887654333 33335568888999999887754 1357777776654 3899998753
No 33
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=22.84 E-value=1.7e+02 Score=29.22 Aligned_cols=100 Identities=9% Similarity=-0.047 Sum_probs=58.5
Q ss_pred hHHHHHHHHHcCcHH--HHHHHHH--HHHHHHHHHHHHHhCCCC--CCCCEEEEEeeeCCEEEEeCCChHHHHHHHhCCc
Q 044166 149 AEWIKFLGIFANAEA--RANQVYN--AVKENYLCLTRVAAGKTK--PFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGE 222 (369)
Q Consensus 149 ~e~ik~lG~l~gke~--~A~~~~~--~~~~~~~~i~~~~~~~~~--~~kp~V~~~~~~~~~~~~~g~s~~~~li~~AGg~ 222 (369)
..-|+.+|.+|+..+ -++.++. .+++.+..+......... ..+++|++....++ ...-|...++.+++..|-+
T Consensus 50 ~pam~~VG~lw~~G~i~vpqv~~sa~~mk~av~~L~p~l~~~~~~~~~~~kVLlatv~GD-~HdiG~~iva~~L~~~G~e 128 (579)
T 3bul_A 50 MDGMNVVGDLFGEGKMFLPQVVKSARVMKQAVAYLEPFIEASKEQCKTNGKMVIATVKGD-VHDIGKNIVGVVLQCNNYE 128 (579)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHTSSCCCCCSCEEEEEEBTTC-CCCHHHHHHHHHHHTTTCE
T ss_pred HHHHHHHHHHHhCCcCcHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCeEEEEECCCC-CchHHHHHHHHHHHHCCCE
Confidence 345888888887543 3443332 344555555444433211 23688887654332 2223456788888999988
Q ss_pred cccccCCCcccCccccCCHHHHHHhcC--CCcEEEecC
Q 044166 223 NVDSSINKMTYNISNSDDLEQLHAILC--TVDVVIDGT 258 (369)
Q Consensus 223 nv~~~~~~~~~~g~~~vs~E~v~~~~~--npDvii~~~ 258 (369)
-+.- ...++.|.+++.+. +||+|.+..
T Consensus 129 Vi~L---------G~~vP~e~iv~aa~~~~~diVgLS~ 157 (579)
T 3bul_A 129 IVDL---------GVMVPAEKILRTAKEVNADLIGLSG 157 (579)
T ss_dssp EEEC---------CSSBCHHHHHHHHHHHTCSEEEEEC
T ss_pred EEEC---------CCCCCHHHHHHHHHHcCCCEEEEEe
Confidence 6654 13467777766443 999998753
No 34
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=21.35 E-value=1e+02 Score=26.95 Aligned_cols=99 Identities=10% Similarity=-0.055 Sum_probs=56.0
Q ss_pred hHHHHHHHHHcCcHH--HHHHHHHH--HHHHHHHHHHHHhCCCCCCCCEEEEEeeeCCEEEEeCCChHHHHHHHhCCccc
Q 044166 149 AEWIKFLGIFANAEA--RANQVYNA--VKENYLCLTRVAAGKTKPFKPIVAWMEFYNGVWSFTKEAFKLKYVEDAGGENV 224 (369)
Q Consensus 149 ~e~ik~lG~l~gke~--~A~~~~~~--~~~~~~~i~~~~~~~~~~~kp~V~~~~~~~~~~~~~g~s~~~~li~~AGg~nv 224 (369)
..-++.+|..+.+.+ -+++++.. +++.+..++...... ...+++|++....++ +..-|..+++.+++.+|-+-+
T Consensus 78 ~p~l~~vG~~w~~g~~~v~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~vlla~~~gd-~HdiG~~iva~~L~~~G~~Vi 155 (258)
T 2i2x_B 78 MVGMGVVIRLYDEGVIFLPNVMMSADAMLEGIEYCKENSGAT-PKTKGTVVCHVAEGD-VHDIGKNIVTALLRANGYNVV 155 (258)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTSSC-CCCSCEEEEEECTTC-CCCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHhhccc-cCCCCeEEEEeCCCC-ccHHHHHHHHHHHHHCCCEEE
Confidence 345788888886543 34443332 334444444333322 124688887654332 233355678888999998865
Q ss_pred cccCCCcccCccccCCHHHHHHhc--CCCcEEEecC
Q 044166 225 DSSINKMTYNISNSDDLEQLHAIL--CTVDVVIDGT 258 (369)
Q Consensus 225 ~~~~~~~~~~g~~~vs~E~v~~~~--~npDvii~~~ 258 (369)
.- + ..++.|.+.+.+ .+||++.+..
T Consensus 156 ~L---G------~~vp~e~l~~~~~~~~~d~V~lS~ 182 (258)
T 2i2x_B 156 DL---G------RDVPAEEVLAAVQKEKPIMLTGTA 182 (258)
T ss_dssp EE---E------EECCSHHHHHHHHHHCCSEEEEEC
T ss_pred EC---C------CCCCHHHHHHHHHHcCCCEEEEEe
Confidence 43 1 234556554332 2999998754
Done!