BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 044169
(742 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RQE|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit
Bound To Oxaloacetate
Length = 539
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 2/141 (1%)
Query: 44 ASYSAC-QLFNKSPKRAGLSTSDLIFNGYMNIEEKGISRNGYSTRNDSFPDGFIDDGCSN 102
A+Y +C + N+ P + L+ N + + +G + GY ND D F+D N
Sbjct: 70 ATYDSCIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAEN 129
Query: 103 TVPVTCYSLESLLDKQFVIEVLSYCSREECLELGRRYHALITKTAVCGDQFVTASLVNMY 162
+ V +++ D + + ++ + G + + V G + L++M
Sbjct: 130 GMDV-FRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMG 188
Query: 163 AKCGDIKSMVAVVKQMPYLDI 183
A +K M A++K P DI
Sbjct: 189 ADSIALKDMAALLKPQPAYDI 209
>pdb|2R47|A Chain A, Crystal Structure Of Mth_862 Protein Of Unknown Function
From Methanothermobacter Thermautotrophicus
pdb|2R47|B Chain B, Crystal Structure Of Mth_862 Protein Of Unknown Function
From Methanothermobacter Thermautotrophicus
pdb|2R47|C Chain C, Crystal Structure Of Mth_862 Protein Of Unknown Function
From Methanothermobacter Thermautotrophicus
pdb|2R47|D Chain D, Crystal Structure Of Mth_862 Protein Of Unknown Function
From Methanothermobacter Thermautotrophicus
pdb|2R47|E Chain E, Crystal Structure Of Mth_862 Protein Of Unknown Function
From Methanothermobacter Thermautotrophicus
Length = 157
Score = 33.1 bits (74), Expect = 0.62, Method: Composition-based stats.
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 18/118 (15%)
Query: 473 EDAERV-----------FSQLTAADVVSWNSMIKAYSQNGRARKAIILFEKMVVEGIRPT 521
+DAER+ F+QL A V +++ + +ARK + + + I P
Sbjct: 24 KDAERIGFAGVPGVXTPFAQLFAYAVRDKDNIFIPNTDFSKARKLEVTEYGVELGEISPG 83
Query: 522 NSTFLAVLSACSHSGL---VQDGQKVFESMVKEYGILPEEAHYSCMVDLLGRAGKLEI 576
N L +L S G+ ++D +K+ E ++E G E C +D+ RAG E+
Sbjct: 84 NVDVLVLLGGLSMPGIGSDIEDVKKLVEDALEEGG----ELMGLCYMDMFARAGWYEL 137
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 2/100 (2%)
Query: 589 TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRK 648
+A W+ L A D + A ++ LELDP++A+ + L N Y + G A E +
Sbjct: 8 SAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQ 67
Query: 649 LMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYE 688
K E+ +W N Y+ K+ + K E
Sbjct: 68 --KALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALE 105
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 7/58 (12%)
Query: 606 LKMAEFISKQI------LELDPDDAAVYVTLSNMYAEAGLQADAEEQ-RKLMKMKEIS 656
LK+ E IS I +E D A Y L+NMYAE G ++AE+ RK ++++ I+
Sbjct: 314 LKVDELISSAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLENIT 371
>pdb|2Y8N|A Chain A, Crystal Structure Of Glycyl Radical Enzyme
pdb|2Y8N|C Chain C, Crystal Structure Of Glycyl Radical Enzyme
pdb|2YAJ|A Chain A, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
pdb|2YAJ|C Chain C, Crystal Structure Of Glycyl Radical Enzyme With Bound
Substrate
Length = 897
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 5/71 (7%)
Query: 630 LSNMYAEAGLQADAEEQRKLM--KMKEISKEPGCS-WIEVYNKIYRFFSQNKSHSEMPKV 686
++ + EAG D R MKEI+K G S W E Y+K ++ + ++ SE+
Sbjct: 247 IAEVMGEAGDDGDFGMSRGYYYAAMKEITK--GLSAWCENYSKRAKYLASIETDSEIKAN 304
Query: 687 YEKLKQLMQQI 697
YEK++++M I
Sbjct: 305 YEKIEEVMGNI 315
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 290 IINGFKQHGDYEKPLRLVCLMREDGIDPNEYTFTVALASCASLRNSHMG 338
II G ++ DY+K L + E+G+DP +Y + + L S+ +S G
Sbjct: 358 IIGGSQREDDYDKLLNRIL---EEGMDPKDYEWYLDLRRYGSVPHSGFG 403
>pdb|3GFJ|A Chain A, Crystal Structure Of The St1710 Mutant (R89a) Protein
Length = 146
Score = 30.0 bits (66), Expect = 5.1, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 642 DAEEQRK-LMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQLMQQIEDI 700
D E+ RK L+++ E E IE+Y K+ + + S E+ V +K+ +++++IE+I
Sbjct: 85 DREDARKILIEITEKGLETFNKGIEIYKKLANEVTGDLSEDEVILVLDKISKILKRIEEI 144
Query: 701 GH 702
Sbjct: 145 SQ 146
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 6/105 (5%)
Query: 589 TAPIWRPLFAACRCHSDLKMAEFISKQILELDPDDAAVYVTLSNMYAEAGLQADAEEQRK 648
+A W L A D A ++ LELDP++A + L N Y + G +A E +
Sbjct: 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQ 67
Query: 649 LMKMKEISKEPGCSWIEVYNKIYRFFSQNKSHSEMPKVYEKLKQL 693
K E+ +W + N Y+ + E + Y+K +L
Sbjct: 68 --KALELDPNNAEAWYNLGNAYYK----QGDYDEAIEYYQKALEL 106
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 606 LKMAEFISKQIL------ELDPDDAAVYVTLSNMYAEAGLQADAEEQ-RKLMKMKEIS 656
LK+ E IS I E D A Y L+N YAE G ++AE+ RK ++++ I+
Sbjct: 314 LKVDELISSAIFHFKAAXERDSXFAFAYTDLANXYAEGGQYSNAEDIFRKALRLENIT 371
>pdb|4E10|A Chain A, Protelomerase Tela Y201a Covalently Complexed With
Substrate Dna
Length = 462
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 80/205 (39%), Gaps = 22/205 (10%)
Query: 367 LGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSS 426
+G+I EA K W+A++ F N +TE+ +E + RN + S+
Sbjct: 41 VGQIKEAMKSDDASRNRKIRDLWDAEVRYHFDNGRTEKTLELYIMKYRNALKAEFGPKST 100
Query: 427 ILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAAD 486
L C++ E++++ I + + V +S++E + + L AD
Sbjct: 101 PLAICNM---KKLRERLNTYIARGDY-PKTGVATSIVEKIERAEFNTAGRKPTVLLRIAD 156
Query: 487 VVS--------------WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS-A 531
++ W++ I NGRA+ II + IR +L A
Sbjct: 157 FIAAMNGMDAKQDMQALWDAEIAI--MNGRAQTTIISYITKYRNAIREAFGDDHPMLKIA 214
Query: 532 CSHSGLVQDGQKV-FESMVKEYGIL 555
+ + + ++V E + ++G L
Sbjct: 215 TGDAAMADEARRVKMEKIANKHGAL 239
>pdb|4E0G|A Chain A, Protelomerase Tela/dna Hairpin Product/vanadate Complex
Length = 462
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 80/205 (39%), Gaps = 22/205 (10%)
Query: 367 LGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSS 426
+G+I EA K W+A++ F N +TE+ +E + RN + S+
Sbjct: 41 VGQIKEAMKSDDASRNRKIRDLWDAEVRYHFDNGRTEKTLELYIMKYRNALKAEFGPKST 100
Query: 427 ILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAAD 486
L C++ E++++ I + + V +S++E + + L AD
Sbjct: 101 PLAICNM---KKLRERLNTYIARGDY-PKTGVATSIVEKIERAEFNTAGRKPTVLLRIAD 156
Query: 487 VVS--------------WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS-A 531
++ W++ I NGRA+ II + IR +L A
Sbjct: 157 FIAAMNGMDAKQDMQALWDAEIAI--MNGRAQTTIISYITKYRNAIREAFGDDHPMLKIA 214
Query: 532 CSHSGLVQDGQKV-FESMVKEYGIL 555
+ + + ++V E + ++G L
Sbjct: 215 TGDAAMYDEARRVKMEKIANKHGAL 239
>pdb|4E0J|A Chain A, Protelomerase Tela R255a Mutant Complexed With Dna Hairpin
Product
Length = 462
Score = 29.3 bits (64), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 41/205 (20%), Positives = 80/205 (39%), Gaps = 22/205 (10%)
Query: 367 LGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSS 426
+G+I EA K W+A++ F N +TE+ +E + RN + S+
Sbjct: 41 VGQIKEAMKSDDASRNRKIRDLWDAEVRYHFDNGRTEKTLELYIMKYRNALKAEFGPKST 100
Query: 427 ILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAAD 486
L C++ E++++ I + + V +S++E + + L AD
Sbjct: 101 PLAICNM---KKLRERLNTYIARGDY-PKTGVATSIVEKIERAEFNTAGRKPTVLLRIAD 156
Query: 487 VVS--------------WNSMIKAYSQNGRARKAIILFEKMVVEGIRPTNSTFLAVLS-A 531
++ W++ I NGRA+ II + IR +L A
Sbjct: 157 FIAAMNGMDAKQDMQALWDAEIAI--MNGRAQTTIISYITKYRNAIREAFGDDHPMLKIA 214
Query: 532 CSHSGLVQDGQKV-FESMVKEYGIL 555
+ + + ++V E + ++G L
Sbjct: 215 TGDAAMYDEARRVKMEKIANKHGAL 239
>pdb|1WWX|A Chain A, Solution Structure Of The Ets-Domain Of The Ets Domain
Transcription Factor
Length = 107
Score = 29.3 bits (64), Expect = 9.4, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 370 IWE-AKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSSIL 428
+WE + L ++ + W + G FR K+E + + Q +N D TY +
Sbjct: 11 LWEFVRDLLLSPEENCGILEWEDREQGIFRVVKSEALAKMWGQRKKN----DRMTYEKLS 66
Query: 429 KACSLLPSLATCEQIHSRIVKSKFESNVH 457
+A E++ R+V KF N H
Sbjct: 67 RALRYYYKTGILERVDRRLV-YKFGKNAH 94
>pdb|4E0Z|A Chain A, Protelomerase Tela R205a Covalently Complexed With
Substrate Dna
Length = 462
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 20/167 (11%)
Query: 367 LGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSS 426
+G+I EA K W+A++ F N +TE+ +E + RN + S+
Sbjct: 41 VGQIKEAMKSDDASRNRKIRDLWDAEVRYHFDNGRTEKTLELYIMKYRNALKAEFGPKST 100
Query: 427 ILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAAD 486
L C++ E++++ I + + V +S++E + + L AD
Sbjct: 101 PLAICNM---KKLRERLNTYIARGDY-PKTGVATSIVEKIERAEFNTAGRKPTVLLRIAD 156
Query: 487 VVS--------------WNSMIKAYSQNGRARKAIILFEKMVVEGIR 519
++ W++ I NGRA+ II + IR
Sbjct: 157 FIAAMNGMDAKQDMQALWDAEIAI--MNGRAQTTIISYITKYRNAIR 201
>pdb|4E0P|A Chain A, Protelomerase Tela Covalently Complexed With Substrate Dna
pdb|4E0Y|A Chain A, Protelomerase Tela Covalently Complexed With Mutated
Substrate Dna
Length = 462
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 20/167 (11%)
Query: 367 LGEIWEAKKQLKEMGKSASSVSWNAQIAGFFRNQKTEEAIEAFSQMVRNDAACDEFTYSS 426
+G+I EA K W+A++ F N +TE+ +E + RN + S+
Sbjct: 41 VGQIKEAMKSDDASRNRKIRDLWDAEVRYHFDNGRTEKTLELYIMKYRNALKAEFGPKST 100
Query: 427 ILKACSLLPSLATCEQIHSRIVKSKFESNVHVGSSLIEAYNKCGSWEDAERVFSQLTAAD 486
L C++ E++++ I + + V +S++E + + L AD
Sbjct: 101 PLAICNM---KKLRERLNTYIARGDY-PKTGVATSIVEKIERAEFNTAGRKPTVLLRIAD 156
Query: 487 VVS--------------WNSMIKAYSQNGRARKAIILFEKMVVEGIR 519
++ W++ I NGRA+ II + IR
Sbjct: 157 FIAAMNGMDAKQDMQALWDAEIAI--MNGRAQTTIISYITKYRNAIR 201
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,135,432
Number of Sequences: 62578
Number of extensions: 845814
Number of successful extensions: 1994
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1976
Number of HSP's gapped (non-prelim): 28
length of query: 742
length of database: 14,973,337
effective HSP length: 106
effective length of query: 636
effective length of database: 8,340,069
effective search space: 5304283884
effective search space used: 5304283884
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)